Query 040410
Match_columns 171
No_of_seqs 115 out of 1376
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 12:55:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040410.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040410hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.9 1E-25 3.5E-30 182.5 13.1 86 77-162 636-721 (768)
2 4fcg_A Uncharacterized protein 99.9 1.2E-25 4.1E-30 165.9 10.8 164 4-171 100-303 (328)
3 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-25 4.3E-30 164.8 10.2 159 4-163 97-286 (313)
4 4fcg_A Uncharacterized protein 99.9 2.7E-25 9.4E-30 164.0 11.2 161 6-171 79-255 (328)
5 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-25 7.9E-30 163.4 10.2 155 3-159 120-306 (313)
6 3rgz_A Protein brassinosteroid 99.9 7.9E-25 2.7E-29 177.3 13.9 168 4-171 462-706 (768)
7 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-23 3.7E-28 152.4 11.7 166 4-169 52-225 (285)
8 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.7E-27 145.9 13.5 159 2-162 57-222 (272)
9 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-22 4.1E-27 147.0 12.5 165 7-171 31-203 (285)
10 2o6q_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 143.4 14.2 162 8-170 37-206 (270)
11 4eco_A Uncharacterized protein 99.9 1.8E-23 6.1E-28 166.3 7.3 159 4-166 202-397 (636)
12 3m19_A Variable lymphocyte rec 99.9 4.5E-22 1.5E-26 141.6 12.9 153 8-160 35-194 (251)
13 3rfs_A Internalin B, repeat mo 99.9 2.4E-22 8.2E-27 144.6 10.8 161 2-169 79-246 (272)
14 4eco_A Uncharacterized protein 99.9 9.7E-23 3.3E-27 162.1 9.0 157 6-166 247-423 (636)
15 2z66_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 147.6 9.0 161 7-168 77-246 (306)
16 2o6q_A Variable lymphocyte rec 99.9 2E-21 6.8E-26 139.7 13.3 158 3-160 56-220 (270)
17 3v47_A TOLL-like receptor 5B a 99.9 7E-22 2.4E-26 151.1 10.4 74 96-169 298-371 (455)
18 3zyj_A Leucine-rich repeat-con 99.9 1.8E-21 6.3E-26 148.6 12.6 166 3-170 83-280 (440)
19 3v47_A TOLL-like receptor 5B a 99.9 1.8E-21 6.2E-26 148.9 12.6 97 74-170 300-396 (455)
20 2z62_A TOLL-like receptor 4, v 99.9 1.3E-21 4.3E-26 141.0 11.0 125 10-134 30-162 (276)
21 3zyi_A Leucine-rich repeat-con 99.9 2.4E-21 8.1E-26 148.5 12.9 166 3-170 94-291 (452)
22 3zyi_A Leucine-rich repeat-con 99.9 2.9E-21 9.9E-26 148.0 13.2 162 8-171 75-268 (452)
23 2z66_A Variable lymphocyte rec 99.9 2.4E-22 8.1E-27 146.7 6.6 164 6-170 50-224 (306)
24 3t6q_A CD180 antigen; protein- 99.9 2.5E-21 8.5E-26 152.9 12.4 160 6-166 374-544 (606)
25 4ecn_A Leucine-rich repeat pro 99.9 3.1E-22 1.1E-26 163.4 7.4 161 3-168 443-641 (876)
26 2o6s_A Variable lymphocyte rec 99.9 2.2E-21 7.4E-26 134.4 10.6 156 7-169 27-189 (208)
27 3t6q_A CD180 antigen; protein- 99.9 1.7E-21 5.9E-26 153.8 11.3 168 4-171 346-526 (606)
28 3zyj_A Leucine-rich repeat-con 99.9 2.8E-21 9.6E-26 147.6 12.2 163 8-170 64-256 (440)
29 2id5_A Lingo-1, leucine rich r 99.9 3.3E-21 1.1E-25 148.4 12.6 163 8-170 32-201 (477)
30 3m19_A Variable lymphocyte rec 99.9 6.1E-21 2.1E-25 135.7 13.1 161 8-171 14-181 (251)
31 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-21 3.8E-26 154.9 9.9 162 5-168 373-543 (606)
32 1xku_A Decorin; proteoglycan, 99.9 1E-20 3.5E-25 139.4 14.1 70 100-170 195-264 (330)
33 3vq2_A TLR4, TOLL-like recepto 99.9 7.3E-22 2.5E-26 155.9 7.8 167 4-171 346-523 (606)
34 1p9a_G Platelet glycoprotein I 99.9 4.8E-21 1.6E-25 139.1 11.0 157 8-168 31-194 (290)
35 4ecn_A Leucine-rich repeat pro 99.8 2.4E-21 8.2E-26 158.2 9.8 153 6-163 489-662 (876)
36 1p9a_G Platelet glycoprotein I 99.8 7.6E-21 2.6E-25 138.0 11.4 165 3-171 5-174 (290)
37 2id5_A Lingo-1, leucine rich r 99.8 4.8E-21 1.6E-25 147.5 10.6 160 3-162 51-217 (477)
38 2z62_A TOLL-like receptor 4, v 99.8 1.2E-20 4.2E-25 135.8 11.4 168 3-171 47-226 (276)
39 3oja_B Anopheles plasmodium-re 99.8 1.5E-20 5E-25 148.6 12.7 65 4-69 95-161 (597)
40 2ft3_A Biglycan; proteoglycan, 99.8 1E-20 3.6E-25 139.5 11.1 41 4-44 74-115 (332)
41 1wwl_A Monocyte differentiatio 99.8 2.7E-21 9.1E-26 141.7 7.6 159 5-169 118-296 (312)
42 1h6u_A Internalin H; cell adhe 99.8 4.1E-20 1.4E-24 135.2 13.9 157 2-170 57-218 (308)
43 3o6n_A APL1; leucine-rich repe 99.8 2.3E-20 7.9E-25 140.4 12.4 64 4-68 89-154 (390)
44 3o6n_A APL1; leucine-rich repe 99.8 2.8E-20 9.7E-25 139.9 12.6 107 4-110 65-178 (390)
45 2z80_A TOLL-like receptor 2, v 99.8 2.9E-21 1E-25 143.6 7.0 155 4-160 72-237 (353)
46 3oja_B Anopheles plasmodium-re 99.8 3E-20 1E-24 146.9 13.1 108 4-111 71-185 (597)
47 1xku_A Decorin; proteoglycan, 99.8 5.7E-20 1.9E-24 135.4 13.4 163 8-171 52-242 (330)
48 4ezg_A Putative uncharacterize 99.8 2.3E-20 7.9E-25 128.3 10.2 147 5-159 41-195 (197)
49 2z80_A TOLL-like receptor 2, v 99.8 9.8E-21 3.4E-25 140.7 8.8 166 3-171 95-303 (353)
50 2xwt_C Thyrotropin receptor; s 99.8 7E-21 2.4E-25 134.4 7.6 164 4-169 51-229 (239)
51 2z63_A TOLL-like receptor 4, v 99.8 3.5E-21 1.2E-25 150.8 6.7 154 7-161 372-534 (570)
52 1ziw_A TOLL-like receptor 3; i 99.8 5.9E-20 2E-24 146.8 13.6 167 4-170 69-297 (680)
53 1wwl_A Monocyte differentiatio 99.8 4.2E-21 1.4E-25 140.7 6.0 159 6-166 93-273 (312)
54 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-20 7.6E-25 149.3 10.5 162 8-169 25-195 (680)
55 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-20 1.4E-24 136.3 11.0 162 8-171 54-266 (332)
56 3j0a_A TOLL-like receptor 5; m 99.8 5.5E-20 1.9E-24 150.4 12.1 162 6-167 22-196 (844)
57 3j0a_A TOLL-like receptor 5; m 99.8 7.5E-20 2.6E-24 149.6 11.9 84 4-87 69-162 (844)
58 2v70_A SLIT-2, SLIT homolog 2 99.8 1.5E-19 5.3E-24 126.2 11.3 147 11-160 14-168 (220)
59 2z63_A TOLL-like receptor 4, v 99.8 1.1E-19 3.6E-24 142.5 11.4 159 8-166 28-198 (570)
60 3oja_A Leucine-rich immune mol 99.8 2.1E-20 7.1E-25 144.6 7.3 157 8-170 34-238 (487)
61 1h6t_A Internalin B; cell adhe 99.8 2E-19 6.8E-24 130.6 12.0 147 3-159 63-214 (291)
62 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-20 7E-25 146.0 6.8 154 5-159 47-210 (549)
63 2z7x_B TOLL-like receptor 1, v 99.8 2.5E-19 8.4E-24 139.2 12.8 136 30-169 322-468 (520)
64 3e6j_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 125.1 12.3 126 32-158 40-172 (229)
65 2z7x_B TOLL-like receptor 1, v 99.8 8.2E-20 2.8E-24 141.9 9.8 152 5-160 321-483 (520)
66 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.7E-24 125.4 11.1 145 11-158 14-165 (220)
67 4g8a_A TOLL-like receptor 4; l 99.8 1.9E-19 6.6E-24 142.2 11.2 152 8-159 52-215 (635)
68 4fmz_A Internalin; leucine ric 99.8 7.2E-19 2.5E-23 130.2 13.7 156 5-170 174-334 (347)
69 3o53_A Protein LRIM1, AGAP0063 99.8 3.9E-20 1.3E-24 135.8 6.7 94 74-171 145-239 (317)
70 3oja_A Leucine-rich immune mol 99.8 1.2E-19 4E-24 140.4 9.7 134 32-169 120-262 (487)
71 4glp_A Monocyte differentiatio 99.8 3.6E-20 1.2E-24 135.5 6.5 150 6-159 115-286 (310)
72 1h6t_A Internalin B; cell adhe 99.8 3.4E-19 1.1E-23 129.4 11.2 156 4-171 42-202 (291)
73 2z81_A CD282 antigen, TOLL-lik 99.8 1E-19 3.5E-24 142.1 9.1 151 8-158 26-185 (549)
74 2xwt_C Thyrotropin receptor; s 99.8 1.7E-19 5.7E-24 127.3 8.9 161 8-171 31-207 (239)
75 1m9s_A Internalin B; cell inva 99.8 6.8E-19 2.3E-23 139.1 13.2 149 2-160 59-212 (605)
76 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.5E-19 5.3E-24 141.8 9.0 152 5-160 350-512 (562)
77 2xot_A Amphoterin-induced prot 99.8 3.9E-19 1.3E-23 132.6 10.4 150 8-158 39-202 (361)
78 2o6s_A Variable lymphocyte rec 99.8 1.8E-18 6E-23 119.7 13.0 149 11-162 10-165 (208)
79 2ast_B S-phase kinase-associat 99.8 2.8E-20 9.5E-25 137.2 3.9 152 5-156 90-258 (336)
80 1h6u_A Internalin H; cell adhe 99.8 9.1E-19 3.1E-23 128.1 11.5 155 4-170 37-196 (308)
81 1xeu_A Internalin C; cellular 99.8 3.9E-19 1.3E-23 127.4 9.3 148 3-160 36-187 (263)
82 4glp_A Monocyte differentiatio 99.8 1.5E-19 5.2E-24 132.2 6.9 159 6-166 89-271 (310)
83 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.8E-19 3.4E-23 137.2 11.5 139 29-171 350-499 (562)
84 1o6v_A Internalin A; bacterial 99.8 2E-18 7E-23 132.6 13.1 147 3-159 238-389 (466)
85 3o53_A Protein LRIM1, AGAP0063 99.8 3.1E-20 1.1E-24 136.3 2.8 132 31-166 119-259 (317)
86 4fmz_A Internalin; leucine ric 99.8 1.6E-18 5.4E-23 128.3 11.6 148 3-158 194-346 (347)
87 2ell_A Acidic leucine-rich nuc 99.8 3.8E-18 1.3E-22 114.2 11.5 136 7-164 23-165 (168)
88 2ast_B S-phase kinase-associat 99.8 2.1E-19 7.1E-24 132.5 5.3 163 8-171 70-249 (336)
89 1o6v_A Internalin A; bacterial 99.8 5.7E-18 2E-22 130.2 13.3 157 4-170 195-376 (466)
90 2v9t_B SLIT homolog 2 protein 99.8 3.2E-18 1.1E-22 119.5 10.3 128 8-135 32-166 (220)
91 4g8a_A TOLL-like receptor 4; l 99.8 3.5E-18 1.2E-22 135.0 11.5 154 13-169 36-197 (635)
92 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 135.5 10.1 156 4-171 39-199 (605)
93 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 117.2 12.1 130 7-137 39-175 (229)
94 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.9E-23 118.2 7.9 139 27-171 39-183 (197)
95 2ca6_A RAN GTPase-activating p 99.8 4.8E-20 1.6E-24 138.6 -0.9 155 5-159 91-288 (386)
96 2je0_A Acidic leucine-rich nuc 99.7 9E-18 3.1E-22 110.2 10.1 128 7-154 16-149 (149)
97 2xot_A Amphoterin-induced prot 99.7 7.1E-18 2.4E-22 125.8 10.4 145 11-159 21-177 (361)
98 2v70_A SLIT-2, SLIT homolog 2 99.7 7.9E-18 2.7E-22 117.5 9.8 129 8-136 32-168 (220)
99 3cvr_A Invasion plasmid antige 99.7 6.6E-18 2.3E-22 132.5 8.8 144 7-168 99-253 (571)
100 3bz5_A Internalin-J, INLJ; leu 99.7 3.7E-17 1.3E-21 125.5 12.6 148 4-166 81-254 (457)
101 3bz5_A Internalin-J, INLJ; leu 99.7 5.5E-17 1.9E-21 124.5 12.8 145 2-159 58-226 (457)
102 4b8c_D Glucose-repressible alc 99.7 3.7E-18 1.3E-22 137.6 6.5 141 24-168 216-364 (727)
103 1w8a_A SLIT protein; signaling 99.7 2.8E-17 9.7E-22 112.4 9.6 125 11-138 11-143 (192)
104 2ca6_A RAN GTPase-activating p 99.7 1.4E-18 4.7E-23 130.6 2.5 83 4-86 28-135 (386)
105 1w8a_A SLIT protein; signaling 99.7 5.4E-17 1.8E-21 111.0 9.5 123 35-160 11-141 (192)
106 3goz_A Leucine-rich repeat-con 99.7 3.2E-18 1.1E-22 127.7 2.9 155 5-159 47-239 (362)
107 1xeu_A Internalin C; cellular 99.7 1E-17 3.5E-22 120.0 4.9 152 7-171 18-174 (263)
108 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4.1E-24 142.5 -6.9 154 4-162 345-550 (567)
109 1jl5_A Outer protein YOPM; leu 99.7 1.4E-17 4.7E-22 127.8 4.6 155 6-170 9-196 (454)
110 3goz_A Leucine-rich repeat-con 99.7 1.4E-17 4.9E-22 124.2 3.8 153 7-159 21-210 (362)
111 4ay9_X Follicle-stimulating ho 99.7 1E-16 3.5E-21 119.1 8.2 163 4-169 50-226 (350)
112 4b8c_D Glucose-repressible alc 99.7 2.9E-17 9.8E-22 132.5 5.5 154 8-167 173-338 (727)
113 1a9n_A U2A', U2A'; complex (nu 99.7 1.5E-16 5.1E-21 107.3 8.1 131 3-157 14-152 (176)
114 3cvr_A Invasion plasmid antige 99.7 4.1E-16 1.4E-20 122.4 11.7 142 8-171 80-232 (571)
115 2wfh_A SLIT homolog 2 protein 99.7 3E-16 1E-20 107.5 9.5 120 11-134 13-139 (193)
116 2je0_A Acidic leucine-rich nuc 99.7 1.9E-16 6.6E-21 103.8 8.1 121 31-171 16-142 (149)
117 1z7x_W Ribonuclease inhibitor; 99.7 5.5E-18 1.9E-22 129.7 0.5 154 6-159 225-412 (461)
118 2o6r_A Variable lymphocyte rec 99.7 8.8E-16 3E-20 103.5 10.1 126 10-138 9-141 (177)
119 1jl5_A Outer protein YOPM; leu 99.6 1.5E-15 5.3E-20 116.4 12.1 139 4-159 149-291 (454)
120 1ds9_A Outer arm dynein; leuci 99.6 2.7E-18 9.2E-23 118.0 -4.2 147 4-158 14-185 (198)
121 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-15 4.4E-20 120.8 9.5 84 74-166 222-305 (622)
122 1z7x_W Ribonuclease inhibitor; 99.6 3.8E-17 1.3E-21 125.0 0.4 116 54-169 255-398 (461)
123 2ell_A Acidic leucine-rich nuc 99.6 3.6E-15 1.2E-19 99.6 8.2 115 55-171 24-149 (168)
124 3g06_A SSPH2 (leucine-rich rep 99.6 1.5E-14 5.1E-19 114.7 13.0 104 55-171 181-286 (622)
125 1dce_A Protein (RAB geranylger 99.6 7.2E-15 2.4E-19 115.5 10.6 114 34-152 443-567 (567)
126 1ds9_A Outer arm dynein; leuci 99.6 3.7E-17 1.3E-21 112.3 -2.9 131 29-163 15-158 (198)
127 2o6r_A Variable lymphocyte rec 99.6 3.3E-14 1.1E-18 95.7 10.2 108 7-114 27-141 (177)
128 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 97.2 10.0 121 35-159 13-140 (193)
129 4ay9_X Follicle-stimulating ho 99.5 5.1E-14 1.7E-18 104.5 8.7 161 8-171 30-204 (350)
130 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.5E-18 95.1 7.4 113 53-171 17-142 (176)
131 3g39_A Variable lymphocyte rec 99.5 1.2E-13 4.3E-18 92.5 8.8 100 34-136 11-117 (170)
132 3un9_A NLR family member X1; l 99.5 2E-15 6.7E-20 113.1 -1.5 153 7-159 71-253 (372)
133 2r9u_A Variable lymphocyte rec 99.5 2.8E-13 9.4E-18 91.2 8.5 98 35-135 15-119 (174)
134 3g39_A Variable lymphocyte rec 99.5 6.2E-13 2.1E-17 89.1 9.8 101 9-112 10-117 (170)
135 2r9u_A Variable lymphocyte rec 99.4 1.3E-12 4.6E-17 87.8 9.7 99 10-111 14-119 (174)
136 3sb4_A Hypothetical leucine ri 99.4 2.5E-12 8.6E-17 94.6 9.8 162 7-171 48-323 (329)
137 3ogk_B Coronatine-insensitive 99.3 2.8E-13 9.6E-18 106.6 1.0 155 6-160 340-528 (592)
138 3ogk_B Coronatine-insensitive 99.3 2.3E-13 8E-18 107.0 0.1 95 10-105 140-251 (592)
139 2ifg_A High affinity nerve gro 99.3 1.4E-11 4.8E-16 91.1 8.5 102 13-135 13-117 (347)
140 2ifg_A High affinity nerve gro 99.3 4.4E-11 1.5E-15 88.4 10.2 101 37-158 14-116 (347)
141 2p1m_B Transport inhibitor res 99.2 1.5E-12 5E-17 102.4 -1.4 36 120-155 288-324 (594)
142 3un9_A NLR family member X1; l 99.2 5.1E-12 1.7E-16 94.6 1.1 128 32-159 72-225 (372)
143 2p1m_B Transport inhibitor res 99.1 2.9E-12 9.9E-17 100.8 -1.9 84 74-158 433-519 (594)
144 3sb4_A Hypothetical leucine ri 99.0 5.4E-10 1.9E-14 82.1 7.4 96 54-151 225-327 (329)
145 2ra8_A Uncharacterized protein 99.0 4.6E-10 1.6E-14 83.7 5.1 153 4-159 135-321 (362)
146 1io0_A Tropomodulin; LRR prote 98.9 1.8E-09 6.3E-14 73.1 5.7 109 50-158 31-164 (185)
147 2ra8_A Uncharacterized protein 98.9 1.9E-09 6.4E-14 80.4 4.5 148 5-156 169-341 (362)
148 4fdw_A Leucine rich hypothetic 98.7 1.4E-07 4.7E-12 71.3 10.0 82 74-158 272-358 (401)
149 3e4g_A ATP synthase subunit S, 98.6 4E-08 1.4E-12 65.7 4.9 76 56-131 62-149 (176)
150 4fdw_A Leucine rich hypothetic 98.6 3.8E-07 1.3E-11 68.9 10.2 80 74-155 249-333 (401)
151 1io0_A Tropomodulin; LRR prote 98.6 9.1E-09 3.1E-13 69.6 1.0 108 28-135 32-165 (185)
152 3rw6_A Nuclear RNA export fact 98.5 9.9E-08 3.4E-12 68.1 3.7 76 74-151 171-257 (267)
153 3rw6_A Nuclear RNA export fact 98.4 5.7E-07 1.9E-11 64.2 6.3 67 94-162 167-237 (267)
154 3e4g_A ATP synthase subunit S, 98.4 3.6E-07 1.2E-11 61.1 4.7 83 74-156 62-150 (176)
155 1pgv_A TMD-1, tropomodulin TMD 97.9 1.6E-05 5.6E-10 54.0 5.4 107 52-158 38-170 (197)
156 4fs7_A Uncharacterized protein 97.4 0.00072 2.5E-08 50.6 8.6 115 50-169 271-388 (394)
157 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00018 6.2E-09 48.9 4.5 82 74-155 42-136 (197)
158 4fs7_A Uncharacterized protein 97.1 0.0034 1.2E-07 46.9 8.9 96 50-150 292-393 (394)
159 3rfe_A Platelet glycoprotein I 96.8 0.0019 6.6E-08 40.7 4.7 56 76-134 11-68 (130)
160 4h09_A Hypothetical leucine ri 96.8 0.0085 2.9E-07 44.4 8.8 102 50-154 235-342 (379)
161 4gt6_A Cell surface protein; l 96.7 0.0084 2.9E-07 44.8 8.3 126 25-157 258-390 (394)
162 3rfe_A Platelet glycoprotein I 96.5 0.0062 2.1E-07 38.4 5.4 37 74-110 32-68 (130)
163 4gt6_A Cell surface protein; l 96.1 0.023 8E-07 42.4 7.5 106 49-157 259-369 (394)
164 4h09_A Hypothetical leucine ri 95.9 0.077 2.6E-06 39.2 9.5 105 49-155 211-320 (379)
165 2lz0_A Uncharacterized protein 29.9 30 0.001 20.1 2.0 41 89-130 12-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=1e-25 Score=182.49 Aligned_cols=86 Identities=23% Similarity=0.297 Sum_probs=39.9
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
+|++++|++++.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..+.++++|++|++++|.
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred cccccC
Q 040410 157 FRGRIK 162 (171)
Q Consensus 157 ~~~~~p 162 (171)
+.|.+|
T Consensus 716 l~g~iP 721 (768)
T 3rgz_A 716 LSGPIP 721 (768)
T ss_dssp EEEECC
T ss_pred ccccCC
Confidence 444444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.2e-25 Score=165.93 Aligned_cols=164 Identities=19% Similarity=0.187 Sum_probs=105.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEcc-------------------
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFL------------------- 63 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~------------------- 63 (171)
++++++|++|++++|.++ .+|..++.+++|++ ++++|.+. .+|+.+..+++|++|+++
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 444555555555555555 34555555555555 55555554 445445555555555554
Q ss_pred --------------CCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 64 --------------FNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 64 --------------~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
+|.++ .+| + +|++|++++|.+.+ +|..++.+++|+.|++++|.+.+.+|..++.+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 44444 233 4 56666666666663 55566677777777777777766777777777777
Q ss_pred ceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 777777777777777777777888888888887777788877777654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=1.3e-25 Score=164.83 Aligned_cols=159 Identities=24% Similarity=0.270 Sum_probs=73.8
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c--cc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C--SL 75 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~--~L 75 (171)
+.++++|++|++++|.+++.+|..+..+++|++ ++++|.+.+.+|..+..+++|++|++++|.+++.+| + .+
T Consensus 97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L 176 (313)
T 1ogq_A 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF 176 (313)
T ss_dssp GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence 344455555555555554444444555555555 555555444444445555555555555554443333 1 33
Q ss_pred ceEecccccccccChhhh-----------------------hcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410 76 KRLFLVSCNFWEKVPHSI-----------------------NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~-----------------------~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 132 (171)
++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..|. +..+++|++|++++|.
T Consensus 177 ~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR 255 (313)
T ss_dssp CEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred cEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence 444444444443333333 3334444444444444322222 3344444444444444
Q ss_pred cchhhhHHhhccccCceEecccCccccccCc
Q 040410 133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKL 163 (171)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~ 163 (171)
+.+.+|..+..+++|++|++++|.+.+.+|.
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 4444455555555555555555555544444
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=2.7e-25 Score=164.04 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=128.8
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL 78 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L 78 (171)
..+.++.|+|++|.++. +|..++.+++|++ ++++|.+. .+|..+..+++|++|++++|.+. .+| + +|++|
T Consensus 79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 35789999999999984 7888999999999 99999998 89999999999999999999998 555 5 89999
Q ss_pred ecccccccccChhhhhc---------CcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCce
Q 040410 79 FLVSCNFWEKVPHSINN---------FARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLII 149 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~---------l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 149 (171)
++++|...+.+|..++. +++|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 99998877777766554 777888888877777 677777777777777777777763 5556777777777
Q ss_pred EecccCccccccCcccccccCC
Q 040410 150 LHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 150 L~l~~n~~~~~~p~~~~~l~~L 171 (171)
|++++|.+.+.+|..+..+++|
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCC
T ss_pred EECcCCcchhhhHHHhcCCCCC
Confidence 7777777766667666665543
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=2.3e-25 Score=163.41 Aligned_cols=155 Identities=21% Similarity=0.226 Sum_probs=119.6
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCC-CCcEEEccCCcCCC-----------
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLF-PLKELDFLFNKLSS----------- 69 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~----------- 69 (171)
.+.++++|++|++++|.+++..|..+..+++|++ ++++|.+.+.+|..+..++ +|++|++++|.+.+
T Consensus 120 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L 199 (313)
T 1ogq_A 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL 199 (313)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC
T ss_pred HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcc
Confidence 3566777777777777777666666777777777 7777776656666666665 66666666665543
Q ss_pred ------------ccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccC
Q 040410 70 ------------EFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKC 131 (171)
Q Consensus 70 ------------~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 131 (171)
..| + +|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..++.+++|++|++++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 233 4 677778888877755544 788899999999999999899999999999999999999
Q ss_pred ccchhhhHHhhccccCceEecccCc-ccc
Q 040410 132 NFFNRILFLLRNLIQLIILHLSQNS-FRG 159 (171)
Q Consensus 132 ~~~~~~~~~~~~~~~L~~L~l~~n~-~~~ 159 (171)
.+.+.+|.. ..+++|+.+++++|+ +.+
T Consensus 279 ~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 279 NLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccccCCCC-ccccccChHHhcCCCCccC
Confidence 999888875 889999999999998 554
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=7.9e-25 Score=177.32 Aligned_cols=168 Identities=27% Similarity=0.318 Sum_probs=110.8
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
+..+++|++|++++|.+++.+|..+..+++|++ ++++|.+.+.+|..++.+++|++|++++|.+.+.+| + +|+
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 344555555566655555555555566666666 666666655566666666666666666666655555 4 566
Q ss_pred eEecccccccccChhhhh--------------------------------------------------------------
Q 040410 77 RLFLVSCNFWEKVPHSIN-------------------------------------------------------------- 94 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~-------------------------------------------------------------- 94 (171)
+|++++|.+.+.+|..++
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 666666666555554332
Q ss_pred --------cCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccc
Q 040410 95 --------NFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 95 --------~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~ 166 (171)
.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.+|..++.+++|+.||+++|.+.|.+|..+.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred ccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHh
Confidence 234566777777777777777777777777777777777777777777777788888888888777777777
Q ss_pred cccCC
Q 040410 167 LSKEF 171 (171)
Q Consensus 167 ~l~~L 171 (171)
.++.|
T Consensus 702 ~l~~L 706 (768)
T 3rgz_A 702 ALTML 706 (768)
T ss_dssp GCCCC
T ss_pred CCCCC
Confidence 76654
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.1e-23 Score=152.41 Aligned_cols=166 Identities=18% Similarity=0.108 Sum_probs=98.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL 75 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L 75 (171)
+..+++|++|++++|.+++..+..+..+++|++ ++++|. +....|..+..+++|++|++++|.+.+..+ + +|
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 131 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC
Confidence 455666666666666666555556666666666 666665 443334556666666666666666654433 4 56
Q ss_pred ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 66666666666444445566666666666666665333334566666666666666666555555666666666666666
Q ss_pred ccccccCccccccc
Q 040410 156 SFRGRIKLDFELSK 169 (171)
Q Consensus 156 ~~~~~~p~~~~~l~ 169 (171)
.+.+..+..+..++
T Consensus 212 ~l~~~~~~~~~~l~ 225 (285)
T 1ozn_A 212 NLSALPTEALAPLR 225 (285)
T ss_dssp CCSCCCHHHHTTCT
T ss_pred cCCcCCHHHcccCc
Confidence 66543333344443
No 8
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.4e-22 Score=145.89 Aligned_cols=159 Identities=18% Similarity=0.109 Sum_probs=126.5
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S 74 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~ 74 (171)
+.+..+++|++|++++|.+++ ...+..+++|++ ++++|.+++..+..+..+++|++|++++|.+.+..+ + +
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence 456778888999999888876 347788888999 999998885555557888899999999988876544 5 7
Q ss_pred cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410 75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
|++|++++|.+++..+..++.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 89999999988866666678888999999999988855556678888999999999988876666678888888988888
Q ss_pred CccccccC
Q 040410 155 NSFRGRIK 162 (171)
Q Consensus 155 n~~~~~~p 162 (171)
|.+.+..|
T Consensus 215 N~~~~~~~ 222 (272)
T 3rfs_A 215 NPWDCTCP 222 (272)
T ss_dssp SCBCCCTT
T ss_pred CCccccCc
Confidence 87765433
No 9
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=1.2e-22 Score=146.95 Aligned_cols=165 Identities=21% Similarity=0.096 Sum_probs=144.8
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCc-CCCccc-----c-ccceE
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNK-LSSEFS-----C-SLKRL 78 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-----~-~L~~L 78 (171)
.+++++|++++|.+++..+..+..+++|++ ++++|.+.+..|..+..+++|++|++++|. +....+ + +|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 568999999999999877778999999999 999999986668889999999999999997 665434 6 89999
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 99999999777888999999999999999998555567899999999999999998655556899999999999999999
Q ss_pred cccCcccccccCC
Q 040410 159 GRIKLDFELSKEF 171 (171)
Q Consensus 159 ~~~p~~~~~l~~L 171 (171)
+..|..+..+++|
T Consensus 191 ~~~~~~~~~l~~L 203 (285)
T 1ozn_A 191 HVHPHAFRDLGRL 203 (285)
T ss_dssp EECTTTTTTCTTC
T ss_pred ccCHhHccCcccc
Confidence 8778888877654
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.8e-22 Score=143.39 Aligned_cols=162 Identities=19% Similarity=0.163 Sum_probs=106.6
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
+++++|++++|.++...+..+..+++|++ ++++|.++ .+|+ .+..+++|++|++++|.+.+..+ + +|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 35777777777777655556777777777 77777776 3443 34667777777777777664333 4 677777
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|.+.+..+..++.+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 77777775555566777777777777777764333446677777777777777765444456667777777777777764
Q ss_pred ccCcccccccC
Q 040410 160 RIKLDFELSKE 170 (171)
Q Consensus 160 ~~p~~~~~l~~ 170 (171)
..+..+..+++
T Consensus 196 ~~~~~~~~l~~ 206 (270)
T 2o6q_A 196 VPEGAFDSLEK 206 (270)
T ss_dssp CCTTTTTTCTT
T ss_pred CCHHHhccccC
Confidence 33334544443
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.8e-23 Score=166.33 Aligned_cols=159 Identities=15% Similarity=0.226 Sum_probs=92.7
Q ss_pred cccCCCCcEEEeecccccCC-----------------CCCccC--Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEcc
Q 040410 4 QAKKKQHTYVRLQAKHYTGE-----------------LPFLSG--NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFL 63 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~-----------------~~~~~~--~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~ 63 (171)
++++++|++|+|++|.+++. +|..++ .+++|++ ++++|.+.+.+|+.+..+++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 45555666666666665553 555555 5666666 666665555556556666666666666
Q ss_pred CCc-CCC-ccc-----------c-ccceEecccccccccChh--hhhcCcCCcEEEcccccccccccccccCCCCCceEe
Q 040410 64 FNK-LSS-EFS-----------C-SLKRLFLVSCNFWEKVPH--SINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127 (171)
Q Consensus 64 ~~~-~~~-~~~-----------~-~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 127 (171)
+|. +++ .+| + +|++|++++|+++ .+|. .++.+++|+.|++++|.+.+.+| .++.+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 665 554 333 2 4556666666665 4555 55666666666666666655555 555556666666
Q ss_pred cccCccchhhhHHhhcccc-CceEecccCccccccCcccc
Q 040410 128 INKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 128 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~ 166 (171)
+++|.+. .+|..+..+++ |++|++++|.+. .+|..+.
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 6666655 45555666666 666666666665 4555544
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.5e-22 Score=141.61 Aligned_cols=153 Identities=17% Similarity=0.112 Sum_probs=132.7
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
++++.|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+ + +|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57899999999999877888999999999 999999986666678899999999999999986554 5 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
++|++.+..+..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99999866666678899999999999999855455788999999999999999876666788999999999999998754
No 13
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.4e-22 Score=144.62 Aligned_cols=161 Identities=17% Similarity=0.081 Sum_probs=140.5
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S 74 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~ 74 (171)
+.+..+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+ + +
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 158 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN 158 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence 45778999999999999999877777899999999 999999985555568899999999999999986554 5 8
Q ss_pred cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410 75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
|++|++++|++++..+..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+. +++++.++++.
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~ 231 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWI 231 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHH
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHH
Confidence 99999999999976677788999999999999999976667789999999999999988754 45688899999
Q ss_pred CccccccCccccccc
Q 040410 155 NSFRGRIKLDFELSK 169 (171)
Q Consensus 155 n~~~~~~p~~~~~l~ 169 (171)
|.+.|.+|.+++.++
T Consensus 232 n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHTGGGBBCTTSCBC
T ss_pred HhCCCcccCcccccC
Confidence 999999999887764
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=9.7e-23 Score=162.11 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=141.7
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCC-cCCccCCCC------CCCcEEEccCCcCCCccc----
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSG-ELPTSIGNL------FPLKELDFLFNKLSSEFS---- 72 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~---- 72 (171)
++++|++|++++|.+.+.+|..++.+++|++ ++++|. +++ .+|..++.+ ++|++|++++|.++ .+|
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 8999999999999999999999999999999 999998 887 788888776 99999999999988 443
Q ss_pred ---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCC-CceEecccCccchhhhHHhhccc--
Q 040410 73 ---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKS-LEVLAINKCNFFNRILFLLRNLI-- 145 (171)
Q Consensus 73 ---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~-- 145 (171)
+ +|++|++++|.+.+.+| .++.+++|+.|++++|.+. .+|..++.+++ |++|++++|.+. .+|..+...+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 5 89999999999998888 8899999999999999998 88999999998 999999999998 7887776654
Q ss_pred cCceEecccCccccccCcccc
Q 040410 146 QLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 146 ~L~~L~l~~n~~~~~~p~~~~ 166 (171)
+|++|++++|.+.+.+|..+.
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSC
T ss_pred ccCEEECcCCcCCCcchhhhc
Confidence 899999999999988888777
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.6e-22 Score=147.58 Aligned_cols=161 Identities=22% Similarity=0.223 Sum_probs=101.0
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL 78 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L 78 (171)
+++|++|++++|.++. ++..+..+++|++ ++++|.+.+..+ ..+..+++|++|++++|.+.+..+ + +|++|
T Consensus 77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 3444444444444443 3444556666666 666666653222 356667777777777776654443 4 67777
Q ss_pred ecccccccc-cChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 79 FLVSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 79 ~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
++++|.+.+ ..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 777777664 3556666777777777777777655566677777777777777777654444566677777777777777
Q ss_pred ccccCcccccc
Q 040410 158 RGRIKLDFELS 168 (171)
Q Consensus 158 ~~~~p~~~~~l 168 (171)
.+..|..+..+
T Consensus 236 ~~~~~~~~~~~ 246 (306)
T 2z66_A 236 MTSKKQELQHF 246 (306)
T ss_dssp CBCSSSSCCCC
T ss_pred cccCHHHHHhh
Confidence 76666665554
No 16
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2e-21 Score=139.65 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=136.2
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL 75 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L 75 (171)
.+.++++|++|++++|.++...+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+.+..+ + +|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 4778999999999999999866666789999999 999999985444567899999999999999986654 6 89
Q ss_pred ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 99999999999655566889999999999999998655567889999999999999998655556888999999999999
Q ss_pred ccccc
Q 040410 156 SFRGR 160 (171)
Q Consensus 156 ~~~~~ 160 (171)
++...
T Consensus 216 ~~~c~ 220 (270)
T 2o6q_A 216 PWDCT 220 (270)
T ss_dssp CBCCS
T ss_pred CeeCC
Confidence 98643
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=7e-22 Score=151.14 Aligned_cols=74 Identities=22% Similarity=0.091 Sum_probs=33.8
Q ss_pred CcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410 96 FARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK 169 (171)
Q Consensus 96 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~ 169 (171)
+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 33444444444444433334444444444444444444433344444455555555555555444444444443
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=148.62 Aligned_cols=166 Identities=21% Similarity=0.141 Sum_probs=93.8
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---------
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--------- 72 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------- 72 (171)
.|.++++|++|+|++|.++...+..+..+++|++ ++++|.++...+..+..+++|++|++++|.+....+
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 162 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence 3455666666666666665544455556666666 666665553222345555556666655555442211
Q ss_pred ---------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 73 ---------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 73 ---------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
+ +|++|++++|++. .+| .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 163 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 163 RRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp CEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 3 4555555555554 233 244555666666666666654456666666666666666
Q ss_pred CccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
|.+.+..+..+..+++|++|++++|.+....+..+..+++
T Consensus 241 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred CceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 6666555556666677777777777776544444444443
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=1.8e-21 Score=148.86 Aligned_cols=97 Identities=19% Similarity=0.069 Sum_probs=62.5
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
+|++|++++|.+.+..+..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 56666666666665556666666777777777776665555666667777777777777665556666666777777777
Q ss_pred cCccccccCcccccccC
Q 040410 154 QNSFRGRIKLDFELSKE 170 (171)
Q Consensus 154 ~n~~~~~~p~~~~~l~~ 170 (171)
+|.+.+..+..+..+++
T Consensus 380 ~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp SSCCSCCCTTTTTTCTT
T ss_pred CCccccCCHhHhccCCc
Confidence 77666533334444443
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.3e-21 Score=140.96 Aligned_cols=125 Identities=19% Similarity=0.120 Sum_probs=54.2
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
+++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+ + +|++|++++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 109 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence 444455444444433334444444444 444444442222234444444444444444433222 2 444444444
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~ 134 (171)
|.+.+..+..++.+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 44443222234444444444444444432 13444444444444444444443
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.4e-21 Score=148.48 Aligned_cols=166 Identities=20% Similarity=0.108 Sum_probs=101.8
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---------
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--------- 72 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------- 72 (171)
.|.++++|++|+|++|.+++..+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+....+
T Consensus 94 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 173 (452)
T 3zyi_A 94 TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173 (452)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence 4566777777777777777666667777777777 777777763333346667777777777776653221
Q ss_pred ---------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 73 ---------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 73 ---------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
+ +|++|++++|++.+ +| .+..+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus 174 ~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp CEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 2 44445555554442 22 344555666666666666655556666666666666666
Q ss_pred CccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 131 CNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 131 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 252 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred CcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 6666555556666677777777777766544444444443
No 22
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=2.9e-21 Score=148.00 Aligned_cols=162 Identities=17% Similarity=0.104 Sum_probs=120.4
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|+|++|.+++..+..+..+++|+. ++++|.+.+..+..|.++++|++|++++|.++...+ + +|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57999999999999988889999999999 999999986666789999999999999999885544 6 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEccc-------------------------ccccccccccccCCCCCceEecccCccch
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVF-------------------------NKFSGELLASTKNLKSLEVLAINKCNFFN 135 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~-------------------------n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 135 (171)
++|.+....+..+..+++|+.|++++ |.+. .+| .+..+++|+.|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcc
Confidence 99998855444555555555555554 4443 222 24455566666666666665
Q ss_pred hhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 136 RILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 136 ~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
..|..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 556667777777777777777776556666655543
No 23
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.4e-22 Score=146.68 Aligned_cols=164 Identities=21% Similarity=0.187 Sum_probs=101.7
Q ss_pred cCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-cc
Q 040410 6 KKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SL 75 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L 75 (171)
++++|++|++++|.++.. .+..+..+++|++ ++++|.+. .+|..+..+++|++|++++|.+.+..+ + +|
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTC
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCC
Confidence 344444444444444321 1223333444444 44444443 344455666666666666666554321 4 67
Q ss_pred ceEecccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410 76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 129 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 129 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp CEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC
Confidence 777777777776666667777778888887777765 4667777778888888888877765566777778888888888
Q ss_pred CccccccCcccccccC
Q 040410 155 NSFRGRIKLDFELSKE 170 (171)
Q Consensus 155 n~~~~~~p~~~~~l~~ 170 (171)
|.+.+..+..+..+++
T Consensus 209 N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 209 NNFFSLDTFPYKCLNS 224 (306)
T ss_dssp SCCSBCCSGGGTTCTT
T ss_pred CccCccChhhccCccc
Confidence 8877544445555444
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.5e-21 Score=152.89 Aligned_cols=160 Identities=18% Similarity=0.113 Sum_probs=71.0
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS-----C-SLKR 77 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~ 77 (171)
.+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..++. +..+++|++|++++|.+.+..+ + +|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 3444444444444444333444444444444 44444443222222 4444444444444444433322 3 4444
Q ss_pred Eeccccccccc---ChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEeccc
Q 040410 78 LFLVSCNFWEK---VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 78 L~l~~~~~~~~---~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+..|..+.++++| +|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 44444444321 11234444445555555544443334444455555555555555544444444444445 555555
Q ss_pred CccccccCcccc
Q 040410 155 NSFRGRIKLDFE 166 (171)
Q Consensus 155 n~~~~~~p~~~~ 166 (171)
|.+.+..|..+.
T Consensus 533 N~l~~~~~~~~~ 544 (606)
T 3t6q_A 533 NHISIILPSLLP 544 (606)
T ss_dssp SCCCCCCGGGHH
T ss_pred CcccccCHhhcc
Confidence 555443333333
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=3.1e-22 Score=163.36 Aligned_cols=161 Identities=18% Similarity=0.193 Sum_probs=119.5
Q ss_pred ccccCCCCcEEEeecccccC-----------------CCCCccC--Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEc
Q 040410 3 DQAKKKQHTYVRLQAKHYTG-----------------ELPFLSG--NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~-----------------~~~~~~~--~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l 62 (171)
.++++++|++|+|++|.+++ .+|..++ .+++|+. ++++|.+.+.+|..+..+++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 46677778888888877776 2676766 7777888 88777777777777777888888888
Q ss_pred cCCc-CCC-ccc------------c-ccceEecccccccccChh--hhhcCcCCcEEEcccccccccccccccCCCCCce
Q 040410 63 LFNK-LSS-EFS------------C-SLKRLFLVSCNFWEKVPH--SINNFARLQWYDLVFNKFSGELLASTKNLKSLEV 125 (171)
Q Consensus 63 ~~~~-~~~-~~~------------~-~L~~L~l~~~~~~~~~~~--~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 125 (171)
++|+ +++ .+| + +|++|++++|.+. .+|. .++.+++|+.|++++|.+. .+| .++.+++|+.
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceE
Confidence 8776 665 444 2 4777788888777 6766 7777778888888887777 677 6777778888
Q ss_pred EecccCccchhhhHHhhcccc-CceEecccCccccccCcccccc
Q 040410 126 LAINKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFELS 168 (171)
Q Consensus 126 L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~~l 168 (171)
|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..+
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 888888777 67777777777 888888888877 567665543
No 26
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.2e-21 Score=134.37 Aligned_cols=156 Identities=18% Similarity=0.101 Sum_probs=129.1
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
.+++++|++++|.+++..+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+++..+ + +|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 457999999999998866667889999999 999999984444457889999999999999885543 5 899999
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .++++++|+++.|.+.|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 99999986666668889999999999999985544567889999999999998764 34578889999999999
Q ss_pred ccCccccccc
Q 040410 160 RIKLDFELSK 169 (171)
Q Consensus 160 ~~p~~~~~l~ 169 (171)
.+|.+++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 9998888765
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.7e-21 Score=153.81 Aligned_cols=168 Identities=19% Similarity=0.152 Sum_probs=113.3
Q ss_pred cccCCCCcEEEeecccccCCC--CCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-
Q 040410 4 QAKKKQHTYVRLQAKHYTGEL--PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C- 73 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~- 73 (171)
+..+++|++|++++|.+++.. +..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+ +
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 344555556666555555433 445566666666 666666654455566666777777777776654432 4
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEccccccccc---ccccccCCCCCceEecccCccchhhhHHhhccccCceE
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE---LLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIIL 150 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 150 (171)
+|++|++++|.+.+..+..++.+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 677777777777766666777777788888877777642 22456777788888888888776667777888888888
Q ss_pred ecccCccccccCcccccccCC
Q 040410 151 HLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 151 ~l~~n~~~~~~p~~~~~l~~L 171 (171)
++++|.+.+..|..+..++.|
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSC
T ss_pred ECCCCccCcCChhHhCccccc
Confidence 888888877777777766543
No 28
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=147.61 Aligned_cols=163 Identities=18% Similarity=0.113 Sum_probs=113.7
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
++++.|+|++|.++...+..+..+++|++ ++++|.+....+..|..+++|++|++++|.++...+ + +|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 57899999999999888889999999999 999999985556779999999999999999985544 5 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCceEecc----------------------cCccchhh
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEVLAIN----------------------KCNFFNRI 137 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~L~l~----------------------~n~~~~~~ 137 (171)
++|.+....+..+..+++|+.|++++|...+.++. .+.++++|++|+++ +|.+.+..
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 223 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEEC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccC
Confidence 99998865555666666666666666332223332 34445555555554 44444433
Q ss_pred hHHhhccccCceEecccCccccccCcccccccC
Q 040410 138 LFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 138 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
|..+..+++|++|++++|.+.+..+..|..+++
T Consensus 224 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 256 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256 (440)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred hhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence 445555555555555555555444444444443
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=148.43 Aligned_cols=163 Identities=20% Similarity=0.176 Sum_probs=123.9
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|+|++|.+++..+..+..+++|++ ++++|.+.+..|..|..+++|++|++++|.+....+ + +|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46788888888888766777888888888 888888876557778888888888888887764433 5 7888888
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
++|.+.+..+..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 88888777777778888888888888887766667778888888888888887765555677788888888888877765
Q ss_pred cCcccccccC
Q 040410 161 IKLDFELSKE 170 (171)
Q Consensus 161 ~p~~~~~l~~ 170 (171)
.+..+..+++
T Consensus 192 ~~~~~~~l~~ 201 (477)
T 2id5_A 192 RDYSFKRLYR 201 (477)
T ss_dssp CTTCSCSCTT
T ss_pred ChhhcccCcc
Confidence 5555555443
No 30
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=6.1e-21 Score=135.75 Aligned_cols=161 Identities=17% Similarity=0.110 Sum_probs=136.5
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
.+.++++++++.++. +|..+. +.++. ++++|.+.+..+..+..+++|++|++++|.+.+..+ + +|++|++
T Consensus 14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 467889999999886 565554 58889 999999986667679999999999999999987655 5 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999976677889999999999999999855455678999999999999999865555789999999999999999976
Q ss_pred cCcccccccCC
Q 040410 161 IKLDFELSKEF 171 (171)
Q Consensus 161 ~p~~~~~l~~L 171 (171)
.+..+..+++|
T Consensus 171 ~~~~~~~l~~L 181 (251)
T 3m19_A 171 PHGAFDRLGKL 181 (251)
T ss_dssp CTTTTTTCTTC
T ss_pred CHHHHhCCCCC
Confidence 66667766654
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.1e-21 Score=154.90 Aligned_cols=162 Identities=17% Similarity=0.119 Sum_probs=93.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
..+++|++|++++|.+++ +|..+..+++|+. ++++|.+.+..| ..+..+++|++|++++|.+.+..| + +|+
T Consensus 373 ~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 373 LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 344555555555555544 3445555666666 666666554333 345566666666666666554443 3 566
Q ss_pred eEeccccccccc-ChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 77 RLFLVSCNFWEK-VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 77 ~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
+|++++|.+.+. .|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 666666666542 4555566666666666666666555555666666666666666666555556666666666666666
Q ss_pred ccccccCcccccc
Q 040410 156 SFRGRIKLDFELS 168 (171)
Q Consensus 156 ~~~~~~p~~~~~l 168 (171)
.+. .+|..+..+
T Consensus 532 ~l~-~~p~~~~~l 543 (606)
T 3vq2_A 532 RIE-TSKGILQHF 543 (606)
T ss_dssp CCC-CEESCGGGS
T ss_pred cCc-ccCHhHhhh
Confidence 665 345544444
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=1e-20 Score=139.41 Aligned_cols=70 Identities=24% Similarity=0.079 Sum_probs=36.6
Q ss_pred cEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 100 QWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 100 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
+.|++++|.+.+..|..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++
T Consensus 195 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp SEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 33333334443333445555555666666666555444445555666666666666665 45555554443
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=7.3e-22 Score=155.93 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=144.4
Q ss_pred cccCCCCcEEEeecccccCC--CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-
Q 040410 4 QAKKKQHTYVRLQAKHYTGE--LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C- 73 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~- 73 (171)
+..+++|++|++++|.+++. .+..+..+++|++ ++++|.+. .+|..+..+++|++|++++|.+.+..+ +
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 45677888888888887764 3667788889999 99999887 577889999999999999998876544 5
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEccccccccc-ccccccCCCCCceEecccCccchhhhHHhhccccCceEec
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE-LLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHL 152 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 152 (171)
+|++|++++|.+.+..|..++.+++|+.|++++|.+.+. +|..++.+++|+.|++++|.+.+..|..+..+++|++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 899999999999988888999999999999999999873 7888999999999999999999877888999999999999
Q ss_pred ccCccccccCcccccccCC
Q 040410 153 SQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 153 ~~n~~~~~~p~~~~~l~~L 171 (171)
++|.+.+..|..+..+++|
T Consensus 505 s~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp CSSCCSCEEGGGTTTCTTC
T ss_pred CCCcCCCcCHHHccCCCcC
Confidence 9999998778888887764
No 34
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=4.8e-21 Score=139.12 Aligned_cols=157 Identities=22% Similarity=0.115 Sum_probs=91.0
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
++++.|++++|.+++..+..+..+++|+. ++++|.++ .++. ...+++|++|++++|.+. .+| + ++++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 34555555555555544555566666666 66666655 3333 255666666666666655 222 3 5666666
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
++|++++..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ 186 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-C
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-c
Confidence 666666544455666666666666666666433344556666666666666666433334556666666666666665 4
Q ss_pred cCcccccc
Q 040410 161 IKLDFELS 168 (171)
Q Consensus 161 ~p~~~~~l 168 (171)
+|..+..+
T Consensus 187 ip~~~~~~ 194 (290)
T 1p9a_G 187 IPKGFFGS 194 (290)
T ss_dssp CCTTTTTT
T ss_pred cChhhccc
Confidence 55554443
No 35
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.4e-21 Score=158.16 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=131.3
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCC-cCCccCCC-------CCCCcEEEccCCcCCCccc---
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSG-ELPTSIGN-------LFPLKELDFLFNKLSSEFS--- 72 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~~~~~~--- 72 (171)
++++|++|+|++|.+.+.+|..++.+++|++ ++++|. +++ .+|..++. +++|++|++++|.+. .+|
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 8999999999999998889999999999999 999998 776 67765554 459999999999987 443
Q ss_pred ----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCC-CceEecccCccchhhhHHhhcccc
Q 040410 73 ----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKS-LEVLAINKCNFFNRILFLLRNLIQ 146 (171)
Q Consensus 73 ----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~ 146 (171)
+ +|++|++++|.+. .+| .++.+++|+.|++++|.+. .+|..++.+++ |+.|++++|.+. .+|..+..++.
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 5 8999999999998 777 8889999999999999998 88988999988 999999999988 77877766654
Q ss_pred --CceEecccCccccccCc
Q 040410 147 --LIILHLSQNSFRGRIKL 163 (171)
Q Consensus 147 --L~~L~l~~n~~~~~~p~ 163 (171)
|+.|++++|.+.+.+|.
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp SCEEEEECCSSCTTTTSSS
T ss_pred CCCCEEECcCCcCCCcccc
Confidence 99999999999876553
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=7.6e-21 Score=138.04 Aligned_cols=165 Identities=18% Similarity=0.100 Sum_probs=139.5
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR 77 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~ 77 (171)
.+.+++++++++++++.++. +|..+. +.++. ++++|.+.+..+..+..+++|++|++++|.+++..+ + +|++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 81 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT 81 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence 46788999999999999987 555543 68889 999999986667789999999999999999986544 6 9999
Q ss_pred EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999998 6788888999999999999999965557899999999999999999866566678999999999999999
Q ss_pred ccccCcccccccCC
Q 040410 158 RGRIKLDFELSKEF 171 (171)
Q Consensus 158 ~~~~p~~~~~l~~L 171 (171)
....+..+..+++|
T Consensus 161 ~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 161 TELPAGLLNGLENL 174 (290)
T ss_dssp SCCCTTTTTTCTTC
T ss_pred CccCHHHhcCcCCC
Confidence 85444445656543
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=4.8e-21 Score=147.50 Aligned_cols=160 Identities=18% Similarity=0.124 Sum_probs=113.1
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL 75 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L 75 (171)
.|.++++|++|+|++|.+++..|..+..+++|++ ++++|.+....+..+..+++|++|++++|.+.+..+ + +|
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 130 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence 4667888888888888888777778888888888 888888874333346788888888888888775544 5 77
Q ss_pred ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 88888888777666667777777777777777776444455667777777777777666544445556666666665555
Q ss_pred ccccccC
Q 040410 156 SFRGRIK 162 (171)
Q Consensus 156 ~~~~~~p 162 (171)
...+.+|
T Consensus 211 ~~~~~~~ 217 (477)
T 2id5_A 211 PYLDTMT 217 (477)
T ss_dssp TTCCEEC
T ss_pred ccccccC
Confidence 4443333
No 38
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=1.2e-20 Score=135.77 Aligned_cols=168 Identities=17% Similarity=0.050 Sum_probs=140.8
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL 75 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L 75 (171)
.+.++++|++|++++|.++...+..+..+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+ + +|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence 5678999999999999999877778999999999 999999986666789999999999999999876544 6 89
Q ss_pred ceEeccccccccc-ChhhhhcCcCCcEEEcccccccccccccccCCCCCc----eEecccCccchhhhHHhhccccCceE
Q 040410 76 KRLFLVSCNFWEK-VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE----VLAINKCNFFNRILFLLRNLIQLIIL 150 (171)
Q Consensus 76 ~~L~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L 150 (171)
++|++++|.+.+. +|..++.+++|++|++++|.+.+..+..+..+.+++ .+++++|.+.+. +.......+|++|
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L 205 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKEL 205 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEE
Confidence 9999999999863 588999999999999999999866667787777777 899999999854 4444445589999
Q ss_pred ecccCccccccCcccccccCC
Q 040410 151 HLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 151 ~l~~n~~~~~~p~~~~~l~~L 171 (171)
++++|.+.+..+..+..+++|
T Consensus 206 ~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 206 ALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp ECCSSCCSCCCTTTTTTCCSC
T ss_pred ECCCCceeecCHhHhcccccc
Confidence 999999986545556666554
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=1.5e-20 Score=148.64 Aligned_cols=65 Identities=22% Similarity=0.139 Sum_probs=29.6
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCC
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSS 69 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~ 69 (171)
|..+++|++|+|++|.+++..|..++.+++|++ ++++|.+. .+|+. |..+++|++|++++|.+.+
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~ 161 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLER 161 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCC
Confidence 344444555555555544444444444444544 44444444 22222 3444444444444444443
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=1e-20 Score=139.52 Aligned_cols=41 Identities=17% Similarity=0.031 Sum_probs=20.4
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccC
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSS 44 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~ 44 (171)
+.++++|++|++++|.+++..|..++.+++|++ ++++|.+.
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 115 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC
Confidence 344555555555555554444444555555555 55554443
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.7e-21 Score=141.70 Aligned_cols=159 Identities=18% Similarity=0.080 Sum_probs=83.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCcc-------
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEF------- 71 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------- 71 (171)
..+++|++|++++|.+++. |..++.+ ++|++ ++++|.+.+..|..+..+++|++|++++|++.+..
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3444455555555554443 4334433 45555 55555554333345556666666666666544321
Q ss_pred -c-c-ccceEecccccccc--cCh-hhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhcc
Q 040410 72 -S-C-SLKRLFLVSCNFWE--KVP-HSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNL 144 (171)
Q Consensus 72 -~-~-~L~~L~l~~~~~~~--~~~-~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 144 (171)
. + +|++|++++|++.+ ..+ ..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 1 3 56666666666552 111 223455666666666666654443 33445566666666666665 4554443
Q ss_pred ccCceEecccCccccccCccccccc
Q 040410 145 IQLIILHLSQNSFRGRIKLDFELSK 169 (171)
Q Consensus 145 ~~L~~L~l~~n~~~~~~p~~~~~l~ 169 (171)
++|++|++++|.+.+. |. +..++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~ 296 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELP 296 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCC
Confidence 5666666666666643 43 44443
No 42
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.1e-20 Score=135.21 Aligned_cols=157 Identities=21% Similarity=0.247 Sum_probs=106.8
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK 76 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~ 76 (171)
+.+..+++|++|++++|.+++..+ +..+++|++ ++++|.+. .++ .+..+++|++|++++|.+.+..+ + +|+
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~ 132 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCC
T ss_pred hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCC
Confidence 456677788888888887776333 777788888 88888776 343 57777788888888877765433 5 777
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
+|++++|.+.+. +. ++.+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.+ ++. +..+++|++|++++|.
T Consensus 133 ~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 133 VLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSC
T ss_pred EEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCc
Confidence 777777777643 32 6677777777777777763 343 6677777777777777764 332 6677777777777777
Q ss_pred cccccCcccccccC
Q 040410 157 FRGRIKLDFELSKE 170 (171)
Q Consensus 157 ~~~~~p~~~~~l~~ 170 (171)
+.+.. .+..+++
T Consensus 207 l~~~~--~l~~l~~ 218 (308)
T 1h6u_A 207 ISDVS--PLANTSN 218 (308)
T ss_dssp CCBCG--GGTTCTT
T ss_pred cCccc--cccCCCC
Confidence 76432 2444443
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.3e-20 Score=140.40 Aligned_cols=64 Identities=22% Similarity=0.142 Sum_probs=30.5
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCC
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLS 68 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~ 68 (171)
+..+++|++|++++|.+++..+..++.+++|++ ++++|.+. .+|.. +..+++|++|++++|.+.
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC
Confidence 344455555555555554444444455555555 55555444 33332 344445555555544444
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.8e-20 Score=139.92 Aligned_cols=107 Identities=17% Similarity=0.068 Sum_probs=90.6
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
+..+++|++|++++|.+++..+..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+....+ + +|+
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 144 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 144 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence 567889999999999998877778999999999 999999986556678999999999999999874433 5 899
Q ss_pred eEecccccccccChhhhhcCcCCcEEEccccccc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS 110 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 110 (171)
+|++++|.+.+..+..++.+++|+.|++++|.+.
T Consensus 145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred EEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 9999999998766777888888888888888765
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=143.57 Aligned_cols=155 Identities=17% Similarity=0.086 Sum_probs=104.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc-CCCCCCCcEEEccCCcCCCccc------c-c
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS-IGNLFPLKELDFLFNKLSSEFS------C-S 74 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~------~-~ 74 (171)
+.++++|++|++++|.+++..+..++.+++|++ ++++|.++ .+|.. +..+++|++|++++|.+....+ + +
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 72 LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred hccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 556667777777777776655566677777777 77777766 34443 6667777777777776653211 4 6
Q ss_pred cceEeccccc-ccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhH-HhhccccCceEec
Q 040410 75 LKRLFLVSCN-FWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILF-LLRNLIQLIILHL 152 (171)
Q Consensus 75 L~~L~l~~~~-~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l 152 (171)
|++|++++|. +....+..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.. +|. .+..+++|++|++
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L 229 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLEL 229 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEEC
Confidence 7777777763 444445566777777777777777776667777777777777777777753 343 3445777888888
Q ss_pred ccCccccc
Q 040410 153 SQNSFRGR 160 (171)
Q Consensus 153 ~~n~~~~~ 160 (171)
++|.+.+.
T Consensus 230 ~~n~l~~~ 237 (353)
T 2z80_A 230 RDTDLDTF 237 (353)
T ss_dssp ESCBCTTC
T ss_pred CCCccccc
Confidence 88887653
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3e-20 Score=146.86 Aligned_cols=108 Identities=17% Similarity=0.063 Sum_probs=94.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
+..+++|++|+|++|.+++..+..++.+++|+. ++++|.+.+..|..+..+++|++|++++|.+.+..+ + +|+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 150 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT 150 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence 456889999999999999877779999999999 999999986666678999999999999999885443 5 899
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSG 111 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 111 (171)
+|++++|.+.+..|..++.+++|+.|++++|.+.+
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 99999999998778889999999999999888763
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.7e-20 Score=135.44 Aligned_cols=163 Identities=20% Similarity=0.119 Sum_probs=104.3
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEeccc
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVS 82 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~ 82 (171)
+++++|++++|.+++..+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+. .+| . +|++|++++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~ 130 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHE 130 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhcccccEEECCC
Confidence 45677777777777655556777777777 77777776544666777777777777777766 333 3 566666666
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccc--cccccccCC---------------------CCCceEecccCccchhhhH
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSG--ELLASTKNL---------------------KSLEVLAINKCNFFNRILF 139 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l---------------------~~L~~L~l~~n~~~~~~~~ 139 (171)
|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+ ++|+.|++++|.+.+..+.
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence 66665444555555556666555555431 223334444 4555666666666655566
Q ss_pred HhhccccCceEecccCccccccCcccccccCC
Q 040410 140 LLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 140 ~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
.+..+++|++|++++|.+.+..+..+..+++|
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred HhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 77888888888888888876656566666553
No 48
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=2.3e-20 Score=128.26 Aligned_cols=147 Identities=19% Similarity=0.240 Sum_probs=125.1
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKR 77 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~ 77 (171)
..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. . ++.+..+++|++|++++|.+++..+ + +|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 457789999999999985 45 6889999999 99999765 3 4478899999999999999986444 6 8999
Q ss_pred EecccccccccChhhhhcCcCCcEEEccccc-ccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNK-FSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
|++++|.+++..+..++.+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999999998788899999999999999998 55 566 68899999999999999985 44 68899999999999999
Q ss_pred ccc
Q 040410 157 FRG 159 (171)
Q Consensus 157 ~~~ 159 (171)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 864
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=9.8e-21 Score=140.75 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=130.1
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc--cCCCCCCCcEEEccCCc-CCCccc-----c
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT--SIGNLFPLKELDFLFNK-LSSEFS-----C 73 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~-----~ 73 (171)
.+.++++|++|++++|.+++..+..+..+++|++ ++++|.+. .+|. .+..+++|++|++++|. +....+ +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 4678899999999999998754445889999999 99999988 5665 68899999999999985 443323 5
Q ss_pred -ccceEecccccccccChhhhhcCcCCcEEEccccccccccccc-ccCCCCCceEecccCccch----------------
Q 040410 74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAS-TKNLKSLEVLAINKCNFFN---------------- 135 (171)
Q Consensus 74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~---------------- 135 (171)
++++|++++|.+.+..|..++.+++|++|++++|.+. .+|.. +..+++|+.|++++|.+.+
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 8999999999998877888888889999999888876 45543 3456788888888877654
Q ss_pred ---------------hhhHHhhccccCceEecccCccccccCcc-cccccCC
Q 040410 136 ---------------RILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSKEF 171 (171)
Q Consensus 136 ---------------~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~~L 171 (171)
.+|..+..+++|++|++++|.+. .+|.. +..+++|
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 303 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence 25666778888888888888887 46665 3565543
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=7e-21 Score=134.42 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=106.0
Q ss_pred cccCCCCcEEEeeccc-ccCCCCCccCCcchhhh-hcCC-CccCCcCCccCCCCCCCcEEEccCCcCCCccc----c-cc
Q 040410 4 QAKKKQHTYVRLQAKH-YTGELPFLSGNLRSLKE-DLSK-NNSSGELPTSIGNLFPLKELDFLFNKLSSEFS----C-SL 75 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~-~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~-~L 75 (171)
+..+++|++|++++|. ++...+..+..+++|++ ++++ |.++...+..+..+++|++|++++|.+.+ +| + ++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L 129 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYST 129 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBC
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccc
Confidence 4566677777777775 55544446666777777 7776 66663333456667777777777776654 33 3 55
Q ss_pred c---eEecccc-cccccChhhhhcCcCCc-EEEcccccccccccccccCCCCCceEecccCc-cchhhhHHhhcc-ccCc
Q 040410 76 K---RLFLVSC-NFWEKVPHSINNFARLQ-WYDLVFNKFSGELLASTKNLKSLEVLAINKCN-FFNRILFLLRNL-IQLI 148 (171)
Q Consensus 76 ~---~L~l~~~-~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~ 148 (171)
+ +|++++| .+.+..+..+..+++|+ .+++++|.+. .+|......++|+.|++++|. +.+..+..+..+ ++|+
T Consensus 130 ~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 5 7777777 66654455677777788 8888887777 566544444778888888884 764444567777 7888
Q ss_pred eEecccCccccccCccccccc
Q 040410 149 ILHLSQNSFRGRIKLDFELSK 169 (171)
Q Consensus 149 ~L~l~~n~~~~~~p~~~~~l~ 169 (171)
+|++++|.+....+..+..++
T Consensus 209 ~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 209 LLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp EEECTTCCCCCCCCTTCTTCS
T ss_pred EEECCCCccccCChhHhccCc
Confidence 888888888743233344443
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=3.5e-21 Score=150.83 Aligned_cols=154 Identities=18% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceE
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRL 78 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L 78 (171)
+++|++|++++|.+++..+ .+..+++|++ ++++|.+.+..+ ..+..+++|++|++++|.+.+..+ + +|++|
T Consensus 372 ~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred cCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 3344444444444333211 2444444444 444444442222 234445555555555554443333 3 45555
Q ss_pred eccccccc-ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 79 FLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 79 ~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
++++|.+. +..|..++.+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 55555544 23444444555555555555555444444555555555555555555443334444555555555555555
Q ss_pred cccc
Q 040410 158 RGRI 161 (171)
Q Consensus 158 ~~~~ 161 (171)
.+..
T Consensus 531 ~~~~ 534 (570)
T 2z63_A 531 DCSC 534 (570)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 4433
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=5.9e-20 Score=146.84 Aligned_cols=167 Identities=18% Similarity=0.043 Sum_probs=94.4
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLK 76 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~ 76 (171)
+.++++|++|++++|.++...+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+ + +|+
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 148 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCC
T ss_pred HhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCC
Confidence 445666666666666666544445666666666 666666653333456666666666666666554433 3 566
Q ss_pred eEecccccccccChhhhh--cCcCCcEEEccccccc--------------------------------------------
Q 040410 77 RLFLVSCNFWEKVPHSIN--NFARLQWYDLVFNKFS-------------------------------------------- 110 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~--~l~~L~~l~l~~n~~~-------------------------------------------- 110 (171)
+|++++|.+++..+..++ .+++|+.|++++|.+.
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 666666555544444332 2244555555544443
Q ss_pred -------ccccccccCCCC--CceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 111 -------GELLASTKNLKS--LEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 111 -------~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
+..|..+..++. |+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++
T Consensus 229 L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (680)
T 1ziw_A 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFN 297 (680)
T ss_dssp CTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTT
T ss_pred ccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCC
Confidence 333334444433 667777776666555556666777777777777766655555554443
No 53
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=4.2e-21 Score=140.66 Aligned_cols=159 Identities=16% Similarity=0.036 Sum_probs=132.6
Q ss_pred cCCCCcEEEeecccccCCCCCcc--CCcchhhh-hcCCCccCCcCCccCCCC-----CCCcEEEccCCcCCCccc-----
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLS--GNLRSLKE-DLSKNNSSGELPTSIGNL-----FPLKELDFLFNKLSSEFS----- 72 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~-~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~----- 72 (171)
++++|++|++++|.+++..|..+ ..+++|++ ++++|.+.+. |..+..+ ++|++|++++|.+.+..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 68999999999999998888876 89999999 9999999854 7777776 899999999999987665
Q ss_pred c-ccceEeccccccccc--Chhhh--hcCcCCcEEEcccccccc--ccc-ccccCCCCCceEecccCccchhhh-HHhhc
Q 040410 73 C-SLKRLFLVSCNFWEK--VPHSI--NNFARLQWYDLVFNKFSG--ELL-ASTKNLKSLEVLAINKCNFFNRIL-FLLRN 143 (171)
Q Consensus 73 ~-~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~l~l~~n~~~~--~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~ 143 (171)
+ +|++|++++|++.+. .+..+ +.+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 6 899999999998754 34445 788999999999999873 233 334577999999999999987654 44666
Q ss_pred cccCceEecccCccccccCcccc
Q 040410 144 LIQLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 144 ~~~L~~L~l~~n~~~~~~p~~~~ 166 (171)
+++|++|++++|.+. .+|..+.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC
T ss_pred cCCCCEEECCCCccC-hhhhhcc
Confidence 899999999999998 6787664
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=2.2e-20 Score=149.29 Aligned_cols=162 Identities=22% Similarity=0.132 Sum_probs=139.8
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|++++|.+++..+..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+ + +|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57999999999999877778999999999 999999987677788999999999999999875443 6 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhh--ccccCceEecccCccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLR--NLIQLIILHLSQNSFR 158 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~ 158 (171)
++|.+.+..+..++.+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999876667899999999999999999877788899999999999999999876666554 4588999999999998
Q ss_pred cccCccccccc
Q 040410 159 GRIKLDFELSK 169 (171)
Q Consensus 159 ~~~p~~~~~l~ 169 (171)
+..|..+..++
T Consensus 185 ~~~~~~~~~l~ 195 (680)
T 1ziw_A 185 EFSPGCFHAIG 195 (680)
T ss_dssp CBCTTGGGGSS
T ss_pred ccChhhhhhhh
Confidence 77777665543
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=4.2e-20 Score=136.27 Aligned_cols=162 Identities=19% Similarity=0.069 Sum_probs=118.2
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEeccc
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVS 82 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~ 82 (171)
+++++|++++|.+++..+..+..+++|++ ++++|.+++..|..+..+++|++|++++|.+. .+| . +|++|++++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~ 132 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHD 132 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCC
Confidence 57999999999999877778999999999 99999998666888999999999999999988 444 3 788888888
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccc----------------------------------------------ccccc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSG----------------------------------------------ELLAS 116 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~----------------------------------------------~~~~~ 116 (171)
|.+.+..+..+..+++|+.|++++|.+.. ..+..
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~ 212 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELED 212 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTS
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHH
Confidence 88875555567777777777777766531 12234
Q ss_pred ccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 117 TKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 117 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|
T Consensus 213 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L 266 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLL 266 (332)
T ss_dssp STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTC
T ss_pred hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccC
Confidence 445555666666666665444445666666677777776666 466666655543
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=150.37 Aligned_cols=162 Identities=21% Similarity=0.179 Sum_probs=129.8
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcC-CccCCCCCCCcEEEccCCcCCCccc-----c-ccce
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGEL-PTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKR 77 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~ 77 (171)
..+++++|+|++|.+++..+..+..+++|++ ++++|...+.+ |..|..+++|++|++++|.+.+..| + +|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 3467899999999998877888999999999 99998655455 6678899999999999998886655 5 8999
Q ss_pred EecccccccccChhh--hhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhcc--ccCceEec
Q 040410 78 LFLVSCNFWEKVPHS--INNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNL--IQLIILHL 152 (171)
Q Consensus 78 L~l~~~~~~~~~~~~--~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l 152 (171)
|++++|.+.+..+.. ++.+++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999888766654 7888999999999998875544 578889999999999998887667777666 67888888
Q ss_pred ccCccccccCccccc
Q 040410 153 SQNSFRGRIKLDFEL 167 (171)
Q Consensus 153 ~~n~~~~~~p~~~~~ 167 (171)
+.|.+.+..|..++.
T Consensus 182 ~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 182 AANSLYSRVSVDWGK 196 (844)
T ss_dssp CCSBSCCCCCCCCCS
T ss_pred CCCccccccccchhh
Confidence 888777666655444
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=149.59 Aligned_cols=84 Identities=21% Similarity=0.090 Sum_probs=50.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCcc--CCCCCCCcEEEccCCcCCCccc------c-
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTS--IGNLFPLKELDFLFNKLSSEFS------C- 73 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~------~- 73 (171)
|.++++|++|+|++|.+++..|..++.+++|++ ++++|.+.+..|.. +..+++|++|++++|.+.+..+ +
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence 555666666666666666655666666666666 66666665444443 5666666666666666554322 3
Q ss_pred ccceEecccccccc
Q 040410 74 SLKRLFLVSCNFWE 87 (171)
Q Consensus 74 ~L~~L~l~~~~~~~ 87 (171)
+|++|++++|.+.+
T Consensus 149 ~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 149 SLKSIDFSSNQIFL 162 (844)
T ss_dssp SCCEEEEESSCCCC
T ss_pred CCCEEECCCCcCCe
Confidence 55666665555543
No 58
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=126.23 Aligned_cols=147 Identities=18% Similarity=0.128 Sum_probs=120.9
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCC-ccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELP-TSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
++++++++.++. +|..+. ..+++ ++++|.+++..+ ..+..+++|++|++++|.+++..+ + +|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 588999998876 565443 34567 999999884434 347889999999999999876544 5 899999999
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999877777788999999999999999877678889999999999999999877688889999999999999988643
No 59
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=142.47 Aligned_cols=159 Identities=21% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|++++|.+++..+..+..+++|++ ++++|.+.+..+..|..+++|++|++++|.+.+..+ + +|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 47899999999999877788999999999 999999886556678999999999999999876544 6 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccC----ceEecccC
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL----IILHLSQN 155 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n 155 (171)
++|++.+..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..++.+++| +++++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999985444468899999999999999875 578999999999999999999987667778888888 88999999
Q ss_pred ccccccCcccc
Q 040410 156 SFRGRIKLDFE 166 (171)
Q Consensus 156 ~~~~~~p~~~~ 166 (171)
.+.+..|..+.
T Consensus 188 ~l~~~~~~~~~ 198 (570)
T 2z63_A 188 PMNFIQPGAFK 198 (570)
T ss_dssp CCCEECTTTTT
T ss_pred CceecCHHHhc
Confidence 98876555544
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2.1e-20 Score=144.59 Aligned_cols=157 Identities=14% Similarity=0.053 Sum_probs=86.3
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCC------------------
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLS------------------ 68 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~------------------ 68 (171)
++|++|+|++|.+++..|..++.+++|++ ++++|.+.+..| +..+++|++|++++|.++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 36677777777776655556666777777 777776653222 555555655555555443
Q ss_pred ----------------------Cccc-----c-ccceEecccccccccChhhhh-cCcCCcEEEcccccccccccccccC
Q 040410 69 ----------------------SEFS-----C-SLKRLFLVSCNFWEKVPHSIN-NFARLQWYDLVFNKFSGELLASTKN 119 (171)
Q Consensus 69 ----------------------~~~~-----~-~L~~L~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~ 119 (171)
+..| + +|++|++++|.+++..|..+. .+++|+.|++++|.+.+. +. ...
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-ccc
Confidence 2222 2 344444444444443333332 344444444444444422 21 223
Q ss_pred CCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 120 LKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 120 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+ +|..+..+++
T Consensus 190 l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~ 238 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN 238 (487)
T ss_dssp CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT
T ss_pred CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC
Confidence 5566666666666664 44446677777777777777764 5666655544
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2e-19 Score=130.62 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=98.5
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR 77 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~ 77 (171)
.+..+++|++|++++|.+++..+ ++.+++|+. ++++|.+. .++ .+..+++|++|++++|.+.+... + +|++
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~ 138 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCE
T ss_pred hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEECCCCcCCCChhhcCCCCCCE
Confidence 45566777777777777766333 667777777 77777765 333 36777777777777777664322 4 6777
Q ss_pred EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
|++++|.+.+. ..+..+++|+.|++++|.+.+. +. ++.+++|++|++++|.+.+ ++ .+..+++|+.|++++|.+
T Consensus 139 L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 139 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEE
T ss_pred EEccCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcc
Confidence 77777777643 4566777777777777777643 33 6677777777777777764 44 367777777777777776
Q ss_pred cc
Q 040410 158 RG 159 (171)
Q Consensus 158 ~~ 159 (171)
..
T Consensus 213 ~~ 214 (291)
T 1h6t_A 213 LN 214 (291)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=2.1e-20 Score=146.05 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=71.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc-cc-----c-ccc
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE-FS-----C-SLK 76 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-----~-~L~ 76 (171)
.++++|++|++++|.+++..|..++.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+. .| + +|+
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 126 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence 34444444444444444433344444444444 4444444422222244444444444444444321 11 3 444
Q ss_pred eEecccccccccCh-hhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEeccc
Q 040410 77 RLFLVSCNFWEKVP-HSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLSQ 154 (171)
Q Consensus 77 ~L~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~ 154 (171)
+|++++|...+.++ ..+..+++|++|++++|.+.+..|..++.+++|++|+++.|... .+|.. +..+++|++|++++
T Consensus 127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEES
T ss_pred EEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccC
Confidence 44444444222222 34444444555555555444444444555555555555555443 23332 24466777777777
Q ss_pred Ccccc
Q 040410 155 NSFRG 159 (171)
Q Consensus 155 n~~~~ 159 (171)
|.+.+
T Consensus 206 n~l~~ 210 (549)
T 2z81_A 206 TNLAR 210 (549)
T ss_dssp CBCTT
T ss_pred Ccccc
Confidence 77764
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=139.24 Aligned_cols=136 Identities=16% Similarity=0.183 Sum_probs=68.0
Q ss_pred Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCC--ccc-----c-ccceEecccccccccChhh-hhcCcCC
Q 040410 30 NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSS--EFS-----C-SLKRLFLVSCNFWEKVPHS-INNFARL 99 (171)
Q Consensus 30 ~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~-----~-~L~~L~l~~~~~~~~~~~~-~~~l~~L 99 (171)
.+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+ .+| + +|++|++++|.+.+.+|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 4445555 555555554445555555555555555555543 222 3 4555555555555433332 4444555
Q ss_pred cEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcc-ccccc
Q 040410 100 QWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSK 169 (171)
Q Consensus 100 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~ 169 (171)
+.|++++|.+.+..|..+. ++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..++
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 468 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLT 468 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCC
Confidence 5555555555444444332 45555555555555 45554455555666666666555 34443 44333
No 64
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.6e-19 Score=125.08 Aligned_cols=126 Identities=21% Similarity=0.126 Sum_probs=60.8
Q ss_pred chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEc
Q 040410 32 RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDL 104 (171)
Q Consensus 32 ~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l 104 (171)
++|+. ++++|.+.+..|..+..+++|++|++++|.+....+ + +|++|++++|++.+..+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44444 555555443334444445555555555554432221 3 4455555555554333333445555555555
Q ss_pred ccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 105 VFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 105 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555554 44555555555555555555554332233445555555555555544
No 65
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=8.2e-20 Score=141.94 Aligned_cols=152 Identities=18% Similarity=0.175 Sum_probs=135.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCC--cCCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSG--ELPTSIGNLFPLKELDFLFNKLSSEFS------C-S 74 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~ 74 (171)
..+++|++|++++|.+++..|..++.+++|+. ++++|.+.+ .+|..+..+++|++|++++|.+.+.+| + +
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 57889999999999999988999999999999 999999984 456678999999999999999987455 5 8
Q ss_pred cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEecc
Q 040410 75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLS 153 (171)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~ 153 (171)
+++|++++|.+++..+..+. ++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|.. +..+++|++|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence 99999999999877776554 78999999999998 89998889999999999999998 56665 8899999999999
Q ss_pred cCccccc
Q 040410 154 QNSFRGR 160 (171)
Q Consensus 154 ~n~~~~~ 160 (171)
+|++.+.
T Consensus 477 ~N~~~c~ 483 (520)
T 2z7x_B 477 TNPWDCS 483 (520)
T ss_dssp SSCBCCC
T ss_pred CCCCccc
Confidence 9999764
No 66
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.2e-19 Score=125.40 Aligned_cols=145 Identities=21% Similarity=0.203 Sum_probs=83.4
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC 83 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~ 83 (171)
+.++++++.++. +|..+. +.+++ ++++|.+.+..+..+..+++|++|++++|.+++..| + +|++|++++|
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345555555554 333332 45555 666666653333355566666666666666654433 3 5666666666
Q ss_pred cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
.+....+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666433334556666666666666666554556666666666666666666544445666666666666666653
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=1.9e-19 Score=142.18 Aligned_cols=152 Identities=21% Similarity=0.113 Sum_probs=123.4
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|+|++|.++...+..|..+++|++ ++++|.+++..+..|.++++|++|++++|++++..+ + +|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 36899999999999877778999999999 999999885445568899999999999999875443 6 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccc-cccccccCCCCCceEecccCccchhhhHHhhccccCc----eEecccC
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI----ILHLSQN 155 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n 155 (171)
++|++++..+..++.+++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..+..+..+++++ .++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999986555678899999999999998864 4677888899999999999998876666666665543 5677777
Q ss_pred cccc
Q 040410 156 SFRG 159 (171)
Q Consensus 156 ~~~~ 159 (171)
.+..
T Consensus 212 ~l~~ 215 (635)
T 4g8a_A 212 PMNF 215 (635)
T ss_dssp CCCE
T ss_pred cccc
Confidence 7764
No 68
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.80 E-value=7.2e-19 Score=130.17 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=107.3
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEe
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLF 79 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~ 79 (171)
..+++|++|++++|.+++..+ +..+++|+. ++++|.+. ..+. +..+++|++|++++|.+.+..+ + ++++|+
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 249 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLE 249 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEE
Confidence 344455555555555443211 445555555 55555554 2222 6667778888888877765444 5 788888
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|.+.+ . ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 250 l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 88888774 3 457788888888888888874 3 457788889999999999887777888889999999999999886
Q ss_pred ccCcccccccC
Q 040410 160 RIKLDFELSKE 170 (171)
Q Consensus 160 ~~p~~~~~l~~ 170 (171)
..| +..+++
T Consensus 326 ~~~--~~~l~~ 334 (347)
T 4fmz_A 326 IRP--LASLSK 334 (347)
T ss_dssp CGG--GGGCTT
T ss_pred ccC--hhhhhc
Confidence 544 555544
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.9e-20 Score=135.79 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=58.4
Q ss_pred ccceEecccccccccChhhh-hcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEec
Q 040410 74 SLKRLFLVSCNFWEKVPHSI-NNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHL 152 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 152 (171)
+|++|++++|.+.+..+..+ ..+++|++|++++|.+. .++. ...+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 55566666666554444443 24556666666666655 2232 2246677777777777764 4555777888888888
Q ss_pred ccCccccccCcccccccCC
Q 040410 153 SQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 153 ~~n~~~~~~p~~~~~l~~L 171 (171)
++|.+. .+|..+..+++|
T Consensus 222 ~~N~l~-~l~~~~~~l~~L 239 (317)
T 3o53_A 222 RNNKLV-LIEKALRFSQNL 239 (317)
T ss_dssp TTSCCC-EECTTCCCCTTC
T ss_pred cCCccc-chhhHhhcCCCC
Confidence 888887 467766665543
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=1.2e-19 Score=140.40 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=108.6
Q ss_pred chhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEE
Q 040410 32 RSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYD 103 (171)
Q Consensus 32 ~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~ 103 (171)
++|+. ++++|.+++..|..+..+++|++|++++|.+++..| + +|++|++++|.+++. + ....+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEE
Confidence 34455 555666655456678889999999999999987655 5 899999999999865 3 334689999999
Q ss_pred cccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc-cccCccccccc
Q 040410 104 LVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR-GRIKLDFELSK 169 (171)
Q Consensus 104 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~p~~~~~l~ 169 (171)
+++|.+. .+|..++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++..++
T Consensus 198 Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCH
T ss_pred CCCCCCC-CCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCC
Confidence 9999999 466679999999999999999985 7888889999999999999997 55666665543
No 71
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=3.6e-20 Score=135.53 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=91.4
Q ss_pred cCCCCcEEEeecccccCCCC----CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc--c------c
Q 040410 6 KKKQHTYVRLQAKHYTGELP----FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE--F------S 72 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~------~ 72 (171)
.+++|++|++++|.+++..+ ..+..+++|++ ++++|.+.+..+..+..+++|++|++++|++.+. . .
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 34445555555555443222 12234555555 6666665544445566677777777777765431 1 1
Q ss_pred -c-ccceEecccccccccChh----hhhcCcCCcEEEcccccccccccccccCC---CCCceEecccCccchhhhHHhhc
Q 040410 73 -C-SLKRLFLVSCNFWEKVPH----SINNFARLQWYDLVFNKFSGELLASTKNL---KSLEVLAINKCNFFNRILFLLRN 143 (171)
Q Consensus 73 -~-~L~~L~l~~~~~~~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~ 143 (171)
+ +|++|++++|+++. .+. .++.+++|++|++++|.+.+..|..++.+ ++|++|++++|.+. .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 4 67777777777752 222 24566778888888887776656666655 57888888888777 5665443
Q ss_pred cccCceEecccCcccc
Q 040410 144 LIQLIILHLSQNSFRG 159 (171)
Q Consensus 144 ~~~L~~L~l~~n~~~~ 159 (171)
++|++|++++|.+.+
T Consensus 272 -~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 272 -AKLRVLDLSSNRLNR 286 (310)
T ss_dssp -SCCSCEECCSCCCCS
T ss_pred -CCCCEEECCCCcCCC
Confidence 677888888888775
No 72
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.4e-19 Score=129.43 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=131.5
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL 78 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L 78 (171)
+..+++|++|++++|.++.. +.+..+++|++ ++++|.+. .+++ +..+++|++|++++|.+.+... + +|++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L 117 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSL 117 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEE
T ss_pred hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEE
Confidence 45678899999999999873 35888999999 99999998 4555 9999999999999999886433 6 89999
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++++|.+.+ + ..+..+++|+.|++++|.+.+ + ..++.+++|++|++++|.+.+.. . +..+++|++|++++|.+.
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~-~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIV-P-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccch-h-hcCCCccCEEECCCCcCC
Confidence 999999985 3 468899999999999999984 3 67889999999999999998643 3 889999999999999998
Q ss_pred cccCcccccccCC
Q 040410 159 GRIKLDFELSKEF 171 (171)
Q Consensus 159 ~~~p~~~~~l~~L 171 (171)
+ ++ .+..+++|
T Consensus 192 ~-l~-~l~~l~~L 202 (291)
T 1h6t_A 192 D-LR-ALAGLKNL 202 (291)
T ss_dssp B-CG-GGTTCTTC
T ss_pred C-Ch-hhccCCCC
Confidence 5 44 36666554
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=1e-19 Score=142.07 Aligned_cols=151 Identities=21% Similarity=0.058 Sum_probs=135.3
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
++|++|++++|.+++..|..+..+++|++ ++++|.+.+..|..+..+++|++|++++|.+.+..+ + +|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 58999999999999877889999999999 999999986666789999999999999999987665 6 8999999
Q ss_pred ccccccc-cChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 81 VSCNFWE-KVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 81 ~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++|.+.+ ..|..++.+++|++|++++|...+.+| ..++++++|++|++++|.+.+..|..++.+++|++|+++.|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 9999985 356788999999999999998554666 68999999999999999999888999999999999999999875
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.7e-19 Score=127.34 Aligned_cols=161 Identities=14% Similarity=0.034 Sum_probs=131.0
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-cCCcCCccCCCCCCCcEEEccC-CcCCCccc-----c-ccceE
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-SSGELPTSIGNLFPLKELDFLF-NKLSSEFS-----C-SLKRL 78 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-----~-~L~~L 78 (171)
+++++|++++|.+++..+..+..+++|+. ++++|. ++...+..+..+++|++|++++ |.++...+ + +|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 47999999999999877778999999999 999997 7743344788999999999998 88875443 6 89999
Q ss_pred ecccccccccChhhhhcCcCCc---EEEcccc-cccccccccccCCCCCc-eEecccCccchhhhHHhhccccCceEecc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQ---WYDLVFN-KFSGELLASTKNLKSLE-VLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~---~l~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
++++|.+.+ +|. ++.+++|+ .|++++| .+.+-.+..+..+++|+ .|++++|.+. .+|......++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 999999985 665 88888888 9999999 88854445688999999 9999999998 566543344889999999
Q ss_pred cCc-cccccCcccccc-cCC
Q 040410 154 QNS-FRGRIKLDFELS-KEF 171 (171)
Q Consensus 154 ~n~-~~~~~p~~~~~l-~~L 171 (171)
+|+ +....+..+..+ ++|
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L 207 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGP 207 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCC
T ss_pred CCCCcccCCHHHhhccccCC
Confidence 995 875445556665 543
No 75
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.80 E-value=6.8e-19 Score=139.14 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=124.4
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK 76 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~ 76 (171)
+.+..+++|+.|+|++|.+++..+ +..+++|+. ++++|.+. .++ .+..+++|+.|++++|.+.+..+ + +|+
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~ 134 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLE 134 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCS
T ss_pred hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCCCccccCCCccC
Confidence 467788999999999999887444 888999999 99999987 444 68899999999999999886433 6 899
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCc
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNS 156 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 156 (171)
.|++++|.+.+. ..+..+++|+.|++++|.+.+..| ++.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence 999999999854 578889999999999999985544 8889999999999999885 44 58889999999999998
Q ss_pred cccc
Q 040410 157 FRGR 160 (171)
Q Consensus 157 ~~~~ 160 (171)
+.+.
T Consensus 209 l~~~ 212 (605)
T 1m9s_A 209 CLNK 212 (605)
T ss_dssp EECC
T ss_pred CcCC
Confidence 8753
No 76
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.5e-19 Score=141.77 Aligned_cols=152 Identities=18% Similarity=0.213 Sum_probs=122.2
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCC--cCCccCCCCCCCcEEEccCCcCCCccc------c-c
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSG--ELPTSIGNLFPLKELDFLFNKLSSEFS------C-S 74 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~ 74 (171)
..+++|++|++++|.+++..|..++.+++|+. ++++|.+++ ..|..+..+++|++|++++|.+.+.+| + +
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788888999998888877888888888999 999888873 223567888899999999988876444 5 7
Q ss_pred cceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-hhccccCceEecc
Q 040410 75 LKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-LRNLIQLIILHLS 153 (171)
Q Consensus 75 L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~ 153 (171)
+++|++++|.+++..+..+. ++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|.. +..+++|++|+++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence 88899998888766655443 68899999999887 78887778889999999999888 46665 7888889999999
Q ss_pred cCccccc
Q 040410 154 QNSFRGR 160 (171)
Q Consensus 154 ~n~~~~~ 160 (171)
+|++.+.
T Consensus 506 ~N~~~c~ 512 (562)
T 3a79_B 506 DNPWDCT 512 (562)
T ss_dssp SCCBCCC
T ss_pred CCCcCCC
Confidence 9988754
No 77
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=3.9e-19 Score=132.63 Aligned_cols=150 Identities=19% Similarity=0.120 Sum_probs=118.7
Q ss_pred CCCcEEEeecccccCCCCCccC-Ccchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 8 KQHTYVRLQAKHYTGELPFLSG-NLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
+.++.|+|++|.+++..+..+. .+++|+. ++++|.+....+..|..+++|++|++++|.+....+ + +|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3578899999998886666676 8899999 999998885555668889999999999998875443 5 889999
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccc----cCCCCCceEecccCccchhhhHHhhcccc--CceEecc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLAST----KNLKSLEVLAINKCNFFNRILFLLRNLIQ--LIILHLS 153 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--L~~L~l~ 153 (171)
+++|.+.+..+..+..+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.+....+..+..++. ++.|+++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 9999998777788888899999999999888 455443 56888999999999988544456777766 4788888
Q ss_pred cCccc
Q 040410 154 QNSFR 158 (171)
Q Consensus 154 ~n~~~ 158 (171)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 88875
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.8e-18 Score=119.67 Aligned_cols=149 Identities=19% Similarity=0.082 Sum_probs=123.3
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC 83 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~ 83 (171)
+.++.+++.++. +|..+ .+++++ ++++|.+.+..+..+..+++|++|++++|.+.+..+ + +|++|++++|
T Consensus 10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 577888888776 44433 358899 999999985445557899999999999999985544 5 8999999999
Q ss_pred cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccC
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIK 162 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p 162 (171)
++.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 9996666668899999999999999985555668899999999999999986555568889999999999999887654
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=2.8e-20 Score=137.18 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=92.8
Q ss_pred ccCCCCcEEEeecccccCC-CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCC-cCCCc-cc-----c-c
Q 040410 5 AKKKQHTYVRLQAKHYTGE-LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFN-KLSSE-FS-----C-S 74 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~-----~-~ 74 (171)
..+++|++|++++|.+++. ++..+..+++|++ ++++|.+.+..+..+..+++|++|++++| .+++. ++ + +
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 3456666666666666543 4555566666666 66666665455555666667777777666 44432 22 4 6
Q ss_pred cceEecccc-ccccc-ChhhhhcCc-CCcEEEcccc--ccc-ccccccccCCCCCceEecccCc-cchhhhHHhhccccC
Q 040410 75 LKRLFLVSC-NFWEK-VPHSINNFA-RLQWYDLVFN--KFS-GELLASTKNLKSLEVLAINKCN-FFNRILFLLRNLIQL 147 (171)
Q Consensus 75 L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~l~l~~n--~~~-~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L 147 (171)
|++|++++| .+++. ++..+..++ +|++|++++| .+. +.++..+..+++|++|++++|. +++..+..+..+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 677777766 66543 455566666 6777777666 333 3455555666677777777666 554555566666667
Q ss_pred ceEecccCc
Q 040410 148 IILHLSQNS 156 (171)
Q Consensus 148 ~~L~l~~n~ 156 (171)
++|++++|.
T Consensus 250 ~~L~l~~~~ 258 (336)
T 2ast_B 250 QHLSLSRCY 258 (336)
T ss_dssp CEEECTTCT
T ss_pred CEeeCCCCC
Confidence 777776664
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=9.1e-19 Score=128.09 Aligned_cols=155 Identities=23% Similarity=0.233 Sum_probs=130.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL 78 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L 78 (171)
+..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. .+++ +..+++|++|++++|.+.+... + +|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence 4467899999999999987 34 6888999999 99999998 5665 9999999999999999886433 6 89999
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++++|.+.+ ++ .+..+++|+.|++++|.+.+ ++. ++.+++|++|++++|.+.+ ++. +..+++|++|++++|.+.
T Consensus 113 ~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccC
Confidence 999999985 44 38899999999999999984 444 8899999999999999985 444 889999999999999998
Q ss_pred cccCcccccccC
Q 040410 159 GRIKLDFELSKE 170 (171)
Q Consensus 159 ~~~p~~~~~l~~ 170 (171)
+. +. +..+++
T Consensus 187 ~~-~~-l~~l~~ 196 (308)
T 1h6u_A 187 DI-SP-LASLPN 196 (308)
T ss_dssp CC-GG-GGGCTT
T ss_pred cC-hh-hcCCCC
Confidence 53 32 555544
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.79 E-value=3.9e-19 Score=127.38 Aligned_cols=148 Identities=23% Similarity=0.235 Sum_probs=128.2
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceE
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRL 78 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L 78 (171)
.+..+++|++|++++|.++. ++ .+..+++|++ ++++|.+. .+++ +..+++|++|++++|++.+..+ . +|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEE
T ss_pred chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCCcCccccCcccEE
Confidence 45678999999999999986 44 7889999999 99999998 5665 9999999999999999986433 4 89999
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++++|++.+ .+ .+..+++|+.|++++|.+.+ ++ .++.+++|+.|++++|.+.+. ..+..+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 999999985 43 68899999999999999984 44 688999999999999999864 66889999999999999987
Q ss_pred cc
Q 040410 159 GR 160 (171)
Q Consensus 159 ~~ 160 (171)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=1.5e-19 Score=132.19 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=128.3
Q ss_pred cCCCCcEEEeecccccCCCCCcc--CCcchhhh-hcCCCccCCcCC----ccCCCCCCCcEEEccCCcCCCccc-----c
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLS--GNLRSLKE-DLSKNNSSGELP----TSIGNLFPLKELDFLFNKLSSEFS-----C 73 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~-~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~-----~ 73 (171)
.+++|++|++++|.+++..|..+ ..+++|++ ++++|.+.+..+ ..+..+++|++|++++|.+.+..+ +
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34669999999999998888887 88999999 999999885444 235579999999999999976655 5
Q ss_pred -ccceEeccccccccc--Ch--hhhhcCcCCcEEEcccccccccccc----cccCCCCCceEecccCccchhhhHHhhcc
Q 040410 74 -SLKRLFLVSCNFWEK--VP--HSINNFARLQWYDLVFNKFSGELLA----STKNLKSLEVLAINKCNFFNRILFLLRNL 144 (171)
Q Consensus 74 -~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~l~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 144 (171)
+|++|++++|++.+. .+ ..++.+++|++|++++|.+. .++. .++.+++|++|++++|.+.+..|..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence 899999999987642 22 23467899999999999986 3343 24678999999999999987767767776
Q ss_pred ---ccCceEecccCccccccCcccc
Q 040410 145 ---IQLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 145 ---~~L~~L~l~~n~~~~~~p~~~~ 166 (171)
++|++|++++|.+. .+|..+.
T Consensus 248 ~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp CCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred cCcCcCCEEECCCCCCC-chhhhhc
Confidence 69999999999998 5777653
No 83
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=9.8e-19 Score=137.21 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=113.2
Q ss_pred CCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc--cc-----c-ccceEecccccccccChh-hhhcCcC
Q 040410 29 GNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE--FS-----C-SLKRLFLVSCNFWEKVPH-SINNFAR 98 (171)
Q Consensus 29 ~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-----~-~L~~L~l~~~~~~~~~~~-~~~~l~~ 98 (171)
..+++|++ ++++|.+.+..|..+..+++|++|++++|.+++. .| + +|++|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 56788888 9999988877788888999999999999988852 22 5 899999999999864554 4677889
Q ss_pred CcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccccCcc-cccccCC
Q 040410 99 LQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLD-FELSKEF 171 (171)
Q Consensus 99 L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~-~~~l~~L 171 (171)
|+.|++++|.+.+..|..+. ++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|.. +..+++|
T Consensus 430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 499 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSL 499 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTC
T ss_pred CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCC
Confidence 99999999998877776554 68999999999988 67877779999999999999998 56766 6666553
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.78 E-value=2e-18 Score=132.65 Aligned_cols=147 Identities=23% Similarity=0.261 Sum_probs=98.8
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR 77 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~ 77 (171)
.+..+++|++|++++|.+++..+ +..+++|+. ++++|.+. .+++ +..+++|+.|++++|.+.+..+ + +|++
T Consensus 238 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~ 313 (466)
T 1o6v_A 238 TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLEDISPISNLKNLTY 313 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSE
T ss_pred hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCE
Confidence 34556666666666666655322 566666777 77777665 3343 6667777777777777665444 4 6777
Q ss_pred EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
|++++|.+.+..+ ++.+++|+.|++++|.+.+. ..++.+++|+.|++++|.+.+..| +..+++|++|++++|.+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 7777777765443 56777777777777777642 457777788888888887776554 67777788888888877
Q ss_pred cc
Q 040410 158 RG 159 (171)
Q Consensus 158 ~~ 159 (171)
.+
T Consensus 388 ~~ 389 (466)
T 1o6v_A 388 TN 389 (466)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.1e-20 Score=136.31 Aligned_cols=132 Identities=20% Similarity=0.165 Sum_probs=72.1
Q ss_pred cchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEE
Q 040410 31 LRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWY 102 (171)
Q Consensus 31 l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l 102 (171)
+++|++ ++++|.+.+..+..+..+++|++|++++|.+.+..+ + ++++|++++|.+++. + ....+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEE
Confidence 344555 666665554334445556666666666666554322 3 566666666665532 2 12235566666
Q ss_pred EcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc-cccCcccc
Q 040410 103 DLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR-GRIKLDFE 166 (171)
Q Consensus 103 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~p~~~~ 166 (171)
++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. +.+|.++.
T Consensus 197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp ECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHH
T ss_pred ECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHh
Confidence 66666665 34444556666666666666665 34555555566666666666655 33343333
No 86
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=1.6e-18 Score=128.35 Aligned_cols=148 Identities=20% Similarity=0.208 Sum_probs=127.4
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccce
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKR 77 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~ 77 (171)
.+..+++|+.+++++|.+++..+ +..+++|++ ++++|.+. ..+. +..+++|++|++++|.+.+... + ++++
T Consensus 194 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (347)
T 4fmz_A 194 PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKM 269 (347)
T ss_dssp GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence 46788999999999999987433 888999999 99999998 4555 8899999999999999886432 6 9999
Q ss_pred EecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 78 LFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 78 L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
|++++|.+.+. ..+..+++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..| +..+++|++|++++|.+
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 99999999853 468899999999999999998888899999999999999999986544 88999999999999987
Q ss_pred c
Q 040410 158 R 158 (171)
Q Consensus 158 ~ 158 (171)
+
T Consensus 346 ~ 346 (347)
T 4fmz_A 346 K 346 (347)
T ss_dssp -
T ss_pred c
Confidence 5
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=3.8e-18 Score=114.22 Aligned_cols=136 Identities=18% Similarity=0.159 Sum_probs=105.1
Q ss_pred CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccccc
Q 040410 7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCN 84 (171)
Q Consensus 7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~ 84 (171)
.++|++|++++|.++ +.+|..+..+++|++ ++++|.+.+ + ..+..+++|++|++++|.+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~---------------- 84 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIF---------------- 84 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCC----------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCc----------------
Confidence 467888888888876 456767777888888 888888763 3 56777778888888777765
Q ss_pred ccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhhh---HHhhccccCceEecccCcccc
Q 040410 85 FWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 85 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+..|..+..+++|+.|++++|.+.+ ++ ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.
T Consensus 85 --~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~- 160 (168)
T 2ell_A 85 --GGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ- 160 (168)
T ss_dssp --SCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-
T ss_pred --hHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-
Confidence 3467777778999999999998874 33 678889999999999999885433 37888999999999999886
Q ss_pred ccCcc
Q 040410 160 RIKLD 164 (171)
Q Consensus 160 ~~p~~ 164 (171)
++|..
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 45554
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.1e-19 Score=132.48 Aligned_cols=163 Identities=18% Similarity=0.204 Sum_probs=136.0
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCc-CCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGE-LPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
++++.+++++|.+++..+ .+..+++|++ ++++|.+.+. ++..+..+++|++|++++|.+++..+ + +|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 789999999999988554 4668999999 9999998754 77788899999999999999876555 6 899999
Q ss_pred cccc-ccccc-ChhhhhcCcCCcEEEcccc-ccccc-ccccccCCC-CCceEecccC--ccc-hhhhHHhhccccCceEe
Q 040410 80 LVSC-NFWEK-VPHSINNFARLQWYDLVFN-KFSGE-LLASTKNLK-SLEVLAINKC--NFF-NRILFLLRNLIQLIILH 151 (171)
Q Consensus 80 l~~~-~~~~~-~~~~~~~l~~L~~l~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~~~~L~~L~ 151 (171)
+++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++| .++ +.++..+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 67653 6667889999999999999 88754 677788899 9999999999 455 46778888999999999
Q ss_pred cccCc-cccccCcccccccCC
Q 040410 152 LSQNS-FRGRIKLDFELSKEF 171 (171)
Q Consensus 152 l~~n~-~~~~~p~~~~~l~~L 171 (171)
+++|. +.+..+..+..+++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTC
T ss_pred CCCCCcCCHHHHHHHhCCCCC
Confidence 99999 666667777766654
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.77 E-value=5.7e-18 Score=130.17 Aligned_cols=157 Identities=22% Similarity=0.216 Sum_probs=88.2
Q ss_pred cccCCCCcEEEeecccccCCCC--------------------CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEc
Q 040410 4 QAKKKQHTYVRLQAKHYTGELP--------------------FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDF 62 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~--------------------~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l 62 (171)
+..+++|++|++++|.+++..+ ..+..+++|++ ++++|.+.+ .++ +..+++|+.|++
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKL 272 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEEC
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEEC
Confidence 4455556666665555554322 23344445555 555555442 222 455555555555
Q ss_pred cCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410 63 LFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL 138 (171)
Q Consensus 63 ~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 138 (171)
++|.+.+..+ + +|++|++++|.+.+..+ ++.+++|+.|++++|.+.+..| ++.+++|+.|++++|.+.+.
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--
Confidence 5555554333 3 56666666666654222 5566666666666666664433 55666777777777766643
Q ss_pred HHhhccccCceEecccCccccccCcccccccC
Q 040410 139 FLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 139 ~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
..+..+++|++|++++|.+.+..| +..+++
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 376 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP--LANLTR 376 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence 346677777777777777766544 444443
No 90
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=3.2e-18 Score=119.55 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=115.1
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEec
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFL 80 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l 80 (171)
+++++|++++|.++...+..+..+++|+. ++++|.+.+..|..|..+++|++|++++|.++...+ + +|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 57999999999999877778999999999 999999986668889999999999999999985443 6 8999999
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 135 (171)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999998778899999999999999999996666678999999999999998754
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.76 E-value=3.5e-18 Score=135.02 Aligned_cols=154 Identities=19% Similarity=0.092 Sum_probs=124.4
Q ss_pred EEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccc
Q 040410 13 VRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNF 85 (171)
Q Consensus 13 L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~ 85 (171)
.+-++..++. +|..+- ..+++ ++++|.+++..+..|.++++|++|++++|.+++..+ + +|++|++++|++
T Consensus 36 ~~c~~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 3433334544 554332 46889 999999985445679999999999999999985544 6 899999999999
Q ss_pred cccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch-hhhHHhhccccCceEecccCccccccCcc
Q 040410 86 WEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN-RILFLLRNLIQLIILHLSQNSFRGRIKLD 164 (171)
Q Consensus 86 ~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~p~~ 164 (171)
.+..+..|..+++|++|++++|.+.+-.+..++++++|++|++++|.+.. ..|..++.+++|++|++++|.+.+..|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 97666789999999999999999985444679999999999999999865 46788899999999999999998766666
Q ss_pred ccccc
Q 040410 165 FELSK 169 (171)
Q Consensus 165 ~~~l~ 169 (171)
+..+.
T Consensus 193 l~~L~ 197 (635)
T 4g8a_A 193 LRVLH 197 (635)
T ss_dssp GHHHH
T ss_pred ccchh
Confidence 65543
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3e-18 Score=135.47 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=132.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceE
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRL 78 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L 78 (171)
+..+++|+.|++++|.+.. ++ .+..+++|+. ++++|.+. .+++ +..+++|+.|++++|.+.+... + +|++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 114 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSL 114 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEE
T ss_pred hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEE
Confidence 4568899999999999986 33 6889999999 99999998 4555 8899999999999999885333 6 89999
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
++++|.+.+ + ..+..+++|+.|++++|.+.+ + ..++.+++|+.|++++|.+.+..| +..+++|+.|++++|.+.
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 999999985 3 468899999999999999984 3 678999999999999999986555 899999999999999998
Q ss_pred cccCcccccccCC
Q 040410 159 GRIKLDFELSKEF 171 (171)
Q Consensus 159 ~~~p~~~~~l~~L 171 (171)
+ + ..+..+++|
T Consensus 189 ~-l-~~l~~l~~L 199 (605)
T 1m9s_A 189 D-L-RALAGLKNL 199 (605)
T ss_dssp B-C-GGGTTCTTC
T ss_pred C-C-hHHccCCCC
Confidence 5 3 346666554
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=117.22 Aligned_cols=130 Identities=22% Similarity=0.168 Sum_probs=113.8
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
.++|++|++++|.+++..+..+..+++|++ ++++|.+....+..+..+++|++|++++|.+++..+ + +|++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 367999999999999988888999999999 999999974334457899999999999999986544 5 899999
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhh
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI 137 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 137 (171)
+++|++. .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999998 78888999999999999999998544467889999999999999987543
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.3e-18 Score=118.23 Aligned_cols=139 Identities=15% Similarity=0.212 Sum_probs=119.3
Q ss_pred ccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecccccccccChhhhhcCcCCcE
Q 040410 27 LSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLVSCNFWEKVPHSINNFARLQW 101 (171)
Q Consensus 27 ~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 101 (171)
..+.+++|+. ++++|.+. .+| .+..+++|++|++++|.+....+ + +|++|++++|.+++..+..++.+++|+.
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3467889999 99999998 677 68999999999999997764323 6 8999999999999777888999999999
Q ss_pred EEcccccccccccccccCCCCCceEecccCc-cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 102 YDLVFNKFSGELLASTKNLKSLEVLAINKCN-FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 102 l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
|++++|.+.+..+..++.+++|++|++++|. +. .++ .+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L 183 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKL 183 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSC
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCC
Confidence 9999999998788999999999999999998 55 566 68999999999999999985 44 66666654
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=4.8e-20 Score=138.56 Aligned_cols=155 Identities=21% Similarity=0.214 Sum_probs=75.5
Q ss_pred ccCCCCcEEEeecccccC----CCCCccCCcchhhh-hcCCCccCCcCCcc----CCCC---------CCCcEEEccCCc
Q 040410 5 AKKKQHTYVRLQAKHYTG----ELPFLSGNLRSLKE-DLSKNNSSGELPTS----IGNL---------FPLKELDFLFNK 66 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~-~l~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~ 66 (171)
..+++|++|+|++|.++. .++..+..+++|++ ++++|.+....+.. +..+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 345555555555555554 23334444555555 55555543211111 1112 455555555555
Q ss_pred CC-Cccc--------c-ccceEecccccccc-----cChhhhhcCcCCcEEEccccccc----ccccccccCCCCCceEe
Q 040410 67 LS-SEFS--------C-SLKRLFLVSCNFWE-----KVPHSINNFARLQWYDLVFNKFS----GELLASTKNLKSLEVLA 127 (171)
Q Consensus 67 ~~-~~~~--------~-~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~l~l~~n~~~----~~~~~~~~~l~~L~~L~ 127 (171)
++ ...+ + +|++|++++|++.. ..+..+..+++|+.|++++|.+. ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 54 1111 3 55556665555542 12224445555666666655553 34455555555556666
Q ss_pred cccCccchh----hhHHhhc--cccCceEecccCcccc
Q 040410 128 INKCNFFNR----ILFLLRN--LIQLIILHLSQNSFRG 159 (171)
Q Consensus 128 l~~n~~~~~----~~~~~~~--~~~L~~L~l~~n~~~~ 159 (171)
+++|.+.+. ++..+.. +++|++|++++|.+.+
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 655555543 3333322 5555555555555554
No 96
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=9e-18 Score=110.25 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=93.9
Q ss_pred CCCCcEEEeeccccc-CCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEeccccc
Q 040410 7 KKQHTYVRLQAKHYT-GELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCN 84 (171)
Q Consensus 7 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~ 84 (171)
.++++.|++++|.++ +.+|..+..+++|+. ++++|.+.+ + +.+..+++|++|++++|.++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~---------------- 77 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVS---------------- 77 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCC----------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCccc----------------
Confidence 356777777777776 456666667777777 777776663 3 45666677777777766655
Q ss_pred ccccChhhhhcCcCCcEEEccccccccc-ccccccCCCCCceEecccCccchhhh---HHhhccccCceEeccc
Q 040410 85 FWEKVPHSINNFARLQWYDLVFNKFSGE-LLASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHLSQ 154 (171)
Q Consensus 85 ~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~ 154 (171)
+..|..++.+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..+ ..+..+++|++|++++
T Consensus 78 --~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 78 --GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp --SCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred --chHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 34777777889999999999998752 34788899999999999999886544 4688889999998763
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=7.1e-18 Score=125.84 Aligned_cols=145 Identities=19% Similarity=0.136 Sum_probs=121.6
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCC-CCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIG-NLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
++++++++.++. +|..+. ..++. ++++|.+++..+..+. .+++|++|++++|.+.+..+ + +|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 688999998887 565543 45788 9999999855555566 89999999999999986554 6 899999999
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHH-h---hccccCceEecccCccc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFL-L---RNLIQLIILHLSQNSFR 158 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~---~~~~~L~~L~l~~n~~~ 158 (171)
|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.. +|.. + ..+++|++|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99997767788999999999999999997667899999999999999999985 4543 4 57899999999999998
Q ss_pred c
Q 040410 159 G 159 (171)
Q Consensus 159 ~ 159 (171)
.
T Consensus 177 ~ 177 (361)
T 2xot_A 177 K 177 (361)
T ss_dssp C
T ss_pred c
Confidence 5
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=7.9e-18 Score=117.53 Aligned_cols=129 Identities=19% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCCcEEEeecccccCCCC-CccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 8 KQHTYVRLQAKHYTGELP-FLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
..+++|++++|.+++..+ ..+..+++|+. ++++|.+++..+..|..+++|++|++++|.+++..+ + +|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 357899999999988644 45889999999 999999986556689999999999999999986655 6 899999
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchh
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNR 136 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 136 (171)
+++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+...
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999987788999999999999999999977788999999999999999998754
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=6.6e-18 Score=132.53 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=99.5
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEeccc
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLFLVS 82 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~l~~ 82 (171)
+++|++|++++|.+++ +|. +.. +|+. ++++|.+++ +|. .+++|++|++++|.+++ +| + +|++|++++
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRN 169 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCS
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCC
Confidence 4556666666666665 444 443 6666 666666663 554 56777777777777765 44 5 788888888
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC-------ceEecccCccchhhhHHhhccccCceEecccC
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL-------EVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
|.+++ +|. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.++ .+|..+..+++|++|++++|
T Consensus 170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N 240 (571)
T 3cvr_A 170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240 (571)
T ss_dssp SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence 88775 555 44 77888888888877 6676 554 66 88888888887 57777777888888888888
Q ss_pred ccccccCcccccc
Q 040410 156 SFRGRIKLDFELS 168 (171)
Q Consensus 156 ~~~~~~p~~~~~l 168 (171)
.+.+.+|..+..+
T Consensus 241 ~l~~~~p~~l~~l 253 (571)
T 3cvr_A 241 PLSSRIRESLSQQ 253 (571)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHh
Confidence 8887777666543
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=3.7e-17 Score=125.51 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=86.0
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc------------
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE------------ 70 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------ 70 (171)
++.+++|++|++++|.+++. + ++.+++|++ ++++|.+++ +| +..+++|++|++++|.+++.
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~ 154 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELD 154 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEE
T ss_pred cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEE
Confidence 45566666666666666652 2 556666666 666666653 33 55566666666666655432
Q ss_pred ---------cc---c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhh
Q 040410 71 ---------FS---C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRI 137 (171)
Q Consensus 71 ---------~~---~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 137 (171)
++ + ++++|++++|++++ +| ++.+++|+.|++++|.+.+ + .++.+++|+.|++++|.+.+ +
T Consensus 155 l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~l~~-i 227 (457)
T 3bz5_A 155 CHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNKLTE-I 227 (457)
T ss_dssp CTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSCCSC-C
T ss_pred CCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCcccc-c
Confidence 22 3 45555555555543 22 4455566666666665553 2 25566677777777777664 4
Q ss_pred hHHhhccccCceEecccCccccccCcccc
Q 040410 138 LFLLRNLIQLIILHLSQNSFRGRIKLDFE 166 (171)
Q Consensus 138 ~~~~~~~~~L~~L~l~~n~~~~~~p~~~~ 166 (171)
| ++.+++|++|++++|.+.+..+..+.
T Consensus 228 p--~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 228 D--VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred C--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 5 56667777777777777654333333
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=5.5e-17 Score=124.55 Aligned_cols=145 Identities=20% Similarity=0.115 Sum_probs=102.3
Q ss_pred cccccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccc
Q 040410 2 SDQAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLK 76 (171)
Q Consensus 2 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~ 76 (171)
+.+..+++|++|++++|.+++. + ++.+++|++ ++++|.+++ ++ +..+++|++|++++|.+++ ++ + +|+
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~~~~l~~L~ 130 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LDVSQNPLLT 130 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CCCTTCTTCC
T ss_pred hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ecCCCCCcCC
Confidence 4678899999999999999884 3 889999999 999999984 44 8899999999999999986 45 6 899
Q ss_pred eEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh------------------
Q 040410 77 RLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL------------------ 138 (171)
Q Consensus 77 ~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~------------------ 138 (171)
+|++++|.+++. + ++.+++|+.|++++|...+.+ .++.+++|+.|++++|.+.+ +|
T Consensus 131 ~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 131 YLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp EEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCS
T ss_pred EEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCC
Confidence 999999998853 2 555566666666665333233 24444445555555444442 22
Q ss_pred -HHhhccccCceEecccCcccc
Q 040410 139 -FLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 139 -~~~~~~~~L~~L~l~~n~~~~ 159 (171)
..++.+++|++|++++|.+.+
T Consensus 205 ~~~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 205 KLDLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp CCCCTTCTTCSEEECCSSCCSC
T ss_pred eeccccCCCCCEEECcCCcccc
Confidence 014555566666666666654
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.73 E-value=3.7e-18 Score=137.57 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=113.2
Q ss_pred CCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcC
Q 040410 24 LPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNF 96 (171)
Q Consensus 24 ~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l 96 (171)
.+..+..+..|+. ++++|.+. .+|..+..+++|++|++++|.++ .+| + +|++|++++|.++ .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4667888899999 99999987 78888889999999999999988 555 5 8999999999998 789899999
Q ss_pred cCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhcccc-CceEecccCccccccCcccccc
Q 040410 97 ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQ-LIILHLSQNSFRGRIKLDFELS 168 (171)
Q Consensus 97 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~p~~~~~l 168 (171)
++|+.|++++|.+. .+|..++.+++|++|++++|.+.+.+|..+..... ...+++++|.+.+.+|..+..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l 364 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFI 364 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccccee
Confidence 99999999999997 88988999999999999999999888887766532 2346788888888777766544
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.8e-17 Score=112.41 Aligned_cols=125 Identities=20% Similarity=0.123 Sum_probs=101.8
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
++++++++.++. +|..+.. ++++ ++++|.+.+..+. .+..+++|++|++++|.+++..| + +|++|++++
T Consensus 11 ~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999876 5665543 8889 9999999743333 38899999999999999987655 5 788999999
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL 138 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 138 (171)
|++.+..+..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 98887777778888889999999998887778888888899999999988876543
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.4e-18 Score=130.59 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=41.1
Q ss_pred cccCCCCcEEEeecccccCCCC----CccCCcchhhh-hcCCCccC---CcCCccC-------CCCCCCcEEEccCCcCC
Q 040410 4 QAKKKQHTYVRLQAKHYTGELP----FLSGNLRSLKE-DLSKNNSS---GELPTSI-------GNLFPLKELDFLFNKLS 68 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~-~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~ 68 (171)
+..+++|++|+|++|.++...+ ..+..+++|++ ++++|.+. +.+|..+ ..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 3445566666666666554322 22445555666 55554322 2223322 45555666666665555
Q ss_pred Cc----cc-----c-ccceEeccccccc
Q 040410 69 SE----FS-----C-SLKRLFLVSCNFW 86 (171)
Q Consensus 69 ~~----~~-----~-~L~~L~l~~~~~~ 86 (171)
.. ++ + +|++|++++|.++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 41 22 3 5555555555554
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=5.4e-17 Score=111.02 Aligned_cols=123 Identities=21% Similarity=0.134 Sum_probs=82.5
Q ss_pred hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410 35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF 106 (171)
Q Consensus 35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 106 (171)
+. +++++.+. .+|..+.. ++++|++++|.+.+..+ + +|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44 66666665 56655433 67777777776654332 4 677777777777766666777777777777777
Q ss_pred ccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccccc
Q 040410 107 NKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
|.+.+..+..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777655555566777777777777777766666677777777777777776543
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=3.2e-18 Score=127.70 Aligned_cols=155 Identities=17% Similarity=0.176 Sum_probs=85.2
Q ss_pred ccCC-CCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCcc----CCCC-CCCcEEEccCCcCCCccc
Q 040410 5 AKKK-QHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTS----IGNL-FPLKELDFLFNKLSSEFS 72 (171)
Q Consensus 5 ~~l~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~ 72 (171)
..++ +|++|+|++|.+++..+..++.+ ++|++ ++++|.+++..+.. +..+ ++|++|++++|.+++..+
T Consensus 47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 3444 56666666666655444444443 55666 66666655332322 2233 566666666666654332
Q ss_pred ----------c-ccceEecccccccccCh----hhhhcCc-CCcEEEccccccccccccccc----CC-CCCceEecccC
Q 040410 73 ----------C-SLKRLFLVSCNFWEKVP----HSINNFA-RLQWYDLVFNKFSGELLASTK----NL-KSLEVLAINKC 131 (171)
Q Consensus 73 ----------~-~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~l~l~~n~~~~~~~~~~~----~l-~~L~~L~l~~n 131 (171)
. +|++|++++|.+++... ..+...+ +|++|++++|.+.+..+..++ .+ ++|++|++++|
T Consensus 127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 2 56666666666654332 2333443 677777777766654444333 23 46777777777
Q ss_pred ccchh----hhHHhhc-cccCceEecccCcccc
Q 040410 132 NFFNR----ILFLLRN-LIQLIILHLSQNSFRG 159 (171)
Q Consensus 132 ~~~~~----~~~~~~~-~~~L~~L~l~~n~~~~ 159 (171)
.+.+. ++..+.. .++|++|++++|.+.+
T Consensus 207 ~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 207 LLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp CGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred CCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 66542 4444544 3467777777777654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1e-17 Score=119.97 Aligned_cols=152 Identities=22% Similarity=0.187 Sum_probs=124.5
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc---c-ccceEecc
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---C-SLKRLFLV 81 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~-~L~~L~l~ 81 (171)
+.+++.++++.+.+++. + .+..+++|+. ++++|.+. .++ .+..+++|++|++++|.+.+..+ + +|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECC
Confidence 44566677888888763 3 6788999999 99999987 666 68899999999999999987655 6 89999999
Q ss_pred cccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccccc
Q 040410 82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRI 161 (171)
Q Consensus 82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 161 (171)
+|++.+ ++. +.. ++|+.|++++|.+.+ ++ .++.+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+.
T Consensus 94 ~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 94 RNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-
Confidence 999985 443 223 899999999999984 44 58899999999999999985 44 688999999999999999864
Q ss_pred CcccccccCC
Q 040410 162 KLDFELSKEF 171 (171)
Q Consensus 162 p~~~~~l~~L 171 (171)
..+..+++|
T Consensus 166 -~~l~~l~~L 174 (263)
T 1xeu_A 166 -GGLTRLKKV 174 (263)
T ss_dssp -TTSTTCCCC
T ss_pred -HHhccCCCC
Confidence 556655543
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.2e-19 Score=142.53 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=123.8
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCc-------------cCCcCCccCCC----------------
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNN-------------SSGELPTSIGN---------------- 53 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~-------------~~~~~~~~~~~---------------- 53 (171)
+..+++|+.|+|++|.++. +|..++.+++|++ ++++|. ..+..|..+..
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred cccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 3567788889999998874 6888888888888 876653 12222222111
Q ss_pred ----------------CCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcCcCCcEEEccccccccc
Q 040410 54 ----------------LFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGE 112 (171)
Q Consensus 54 ----------------l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 112 (171)
...|+.|++++|.+++ +| + +|+.|++++|.++ .+|..++.+++|+.|++++|.+.+
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1258899999999885 45 6 8999999999998 789999999999999999999984
Q ss_pred ccccccCCCCCceEecccCccchhh-hHHhhccccCceEecccCccccccC
Q 040410 113 LLASTKNLKSLEVLAINKCNFFNRI-LFLLRNLIQLIILHLSQNSFRGRIK 162 (171)
Q Consensus 113 ~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~p 162 (171)
+| .++.+++|+.|++++|.+.+.. |..++.+++|++|++++|.+.+..|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 77 8999999999999999998765 8899999999999999999986533
No 109
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.68 E-value=1.4e-17 Score=127.80 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=75.1
Q ss_pred cCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCC-------------cEEEccCCcCCCcc
Q 040410 6 KKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPL-------------KELDFLFNKLSSEF 71 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~ 71 (171)
..+.|+++++++|.+ +.+|..++++++|++ ++++|.+.+.+|++++.+.+| +++++++|.+++..
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 456677777777777 456777777777777 777777766677766665543 55555555555321
Q ss_pred c-c-ccceEecccccccccChhhh----------------hcC-cCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410 72 S-C-SLKRLFLVSCNFWEKVPHSI----------------NNF-ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 72 ~-~-~L~~L~l~~~~~~~~~~~~~----------------~~l-~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 132 (171)
. . ++++|++++|.+++ +|..+ ... ++|++|++++|.+.+ +| .++.+++|++|++++|.
T Consensus 88 ~~~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp SCCTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC
T ss_pred CCcCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCc
Confidence 1 2 44555554444443 22211 111 466777777776663 55 46777777777777777
Q ss_pred cchhhhHHhhccccCceEecccCccccccCcccccccC
Q 040410 133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKE 170 (171)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~ 170 (171)
+.+ +|.. .++|++|++++|.+.+ +| .+..+++
T Consensus 165 l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~ 196 (454)
T 1jl5_A 165 LKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPF 196 (454)
T ss_dssp CSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred Ccc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCC
Confidence 663 4432 2467777777777764 45 4555544
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=1.4e-17 Score=124.16 Aligned_cols=153 Identities=17% Similarity=0.075 Sum_probs=121.7
Q ss_pred CCCCcEEEeecccccCCCC----CccCCcc-hhhh-hcCCCccCCcCCccCCCC-----CCCcEEEccCCcCCCccc---
Q 040410 7 KKQHTYVRLQAKHYTGELP----FLSGNLR-SLKE-DLSKNNSSGELPTSIGNL-----FPLKELDFLFNKLSSEFS--- 72 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~--- 72 (171)
.++|++|+|++|.+++..+ ..+..++ +|++ ++++|.+.+..+..+..+ ++|++|++++|.+++..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4459999999999988665 5677888 8999 999999986556556654 899999999999986554
Q ss_pred -------c-ccceEecccccccccChhhhhc-----CcCCcEEEcccccccccc----cccccCCC-CCceEecccCccc
Q 040410 73 -------C-SLKRLFLVSCNFWEKVPHSINN-----FARLQWYDLVFNKFSGEL----LASTKNLK-SLEVLAINKCNFF 134 (171)
Q Consensus 73 -------~-~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~l~l~~n~~~~~~----~~~~~~l~-~L~~L~l~~n~~~ 134 (171)
. +|++|++++|.+++..+..+.. .++|++|++++|.+.+.. +..+..+. +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2 6999999999998776665543 368999999999998543 44445555 9999999999998
Q ss_pred hhhhHHhhc----c-ccCceEecccCcccc
Q 040410 135 NRILFLLRN----L-IQLIILHLSQNSFRG 159 (171)
Q Consensus 135 ~~~~~~~~~----~-~~L~~L~l~~n~~~~ 159 (171)
+..+..+.. . ++|++|++++|.+.+
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 766554444 4 699999999999875
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1e-16 Score=119.06 Aligned_cols=163 Identities=17% Similarity=0.052 Sum_probs=95.8
Q ss_pred cccCCCCcEEEeecccccCCCC-CccCCcchhhh--hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-c
Q 040410 4 QAKKKQHTYVRLQAKHYTGELP-FLSGNLRSLKE--DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-S 74 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~--~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~ 74 (171)
|.++++|++|+|++|.+.+.++ ..|..++++++ .+.+|.+....|..|..+++|++|++++|.+....+ . +
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 129 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence 4455555555555555544333 23445555444 344455543334455666677777776666654333 2 4
Q ss_pred cceEeccc-ccccccChhhhhcCc-CCcEEEcccccccccccccccCCCCCceEeccc-Cccchhhh-HHhhccccCceE
Q 040410 75 LKRLFLVS-CNFWEKVPHSINNFA-RLQWYDLVFNKFSGELLASTKNLKSLEVLAINK-CNFFNRIL-FLLRNLIQLIIL 150 (171)
Q Consensus 75 L~~L~l~~-~~~~~~~~~~~~~l~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~-~~~~~~~~L~~L 150 (171)
+..+.+.+ +.+....+..+..+. .++.|++++|.+. .++.......+++.+++.+ |.+. .+| .+|..+++|++|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence 45555544 334332233444443 5788888888887 6676666667888888875 4444 565 467888999999
Q ss_pred ecccCccccccCc-cccccc
Q 040410 151 HLSQNSFRGRIKL-DFELSK 169 (171)
Q Consensus 151 ~l~~n~~~~~~p~-~~~~l~ 169 (171)
++++|.+.. +|. .+..++
T Consensus 208 dLs~N~l~~-lp~~~~~~L~ 226 (350)
T 4ay9_X 208 DISRTRIHS-LPSYGLENLK 226 (350)
T ss_dssp ECTTSCCCC-CCSSSCTTCC
T ss_pred hcCCCCcCc-cChhhhccch
Confidence 999999874 443 354443
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.9e-17 Score=132.45 Aligned_cols=154 Identities=18% Similarity=0.113 Sum_probs=101.9
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-h-----cCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-cc
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-D-----LSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SL 75 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~-----l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L 75 (171)
+.++.|+|..+.+.. .+..+.....|+. . +..|.+. ..+..+..+++|+.|++++|.+. .+| + .|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 457788888888776 3434333333333 3 3334443 45777889999999999999988 444 6 89
Q ss_pred ceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccC
Q 040410 76 KRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 76 ~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 99999999999 78999999999999999999999 88999999999999999999997 78888999999999999999
Q ss_pred ccccccCccccc
Q 040410 156 SFRGRIKLDFEL 167 (171)
Q Consensus 156 ~~~~~~p~~~~~ 167 (171)
.+.+.+|..+..
T Consensus 327 ~l~~~~p~~~~~ 338 (727)
T 4b8c_D 327 PLEKQFLKILTE 338 (727)
T ss_dssp CCCSHHHHHHHH
T ss_pred ccCCCChHHHhh
Confidence 999887776643
No 113
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.5e-16 Score=107.29 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=83.0
Q ss_pred ccccCCCCcEEEeecccccCCCCCccCCcc-hhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEec
Q 040410 3 DQAKKKQHTYVRLQAKHYTGELPFLSGNLR-SLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFL 80 (171)
Q Consensus 3 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l 80 (171)
.+.++.+|++|++++|.++. ++ .+..+. +|+. ++++|.+++ + +.+..+++|++|++++|.+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~----------- 78 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR----------- 78 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-----------
T ss_pred hcCCcCCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-----------
Confidence 45567778888888888775 33 344444 7778 888887763 4 457777778888887777662
Q ss_pred ccccccccChhhhhcCcCCcEEEcccccccccccc--cccCCCCCceEecccCccchhhhH----HhhccccCceEeccc
Q 040410 81 VSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA--STKNLKSLEVLAINKCNFFNRILF----LLRNLIQLIILHLSQ 154 (171)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~~~L~~L~l~~ 154 (171)
..+..++.+++|+.|++++|.+. .+|. .++.+++|+.|++++|.+. .+|. .+..+++|++|+++.
T Consensus 79 -------~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 79 -------IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp -------ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred -------cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 22223356666666666666664 4444 5566666666666666665 3343 256666666666666
Q ss_pred Ccc
Q 040410 155 NSF 157 (171)
Q Consensus 155 n~~ 157 (171)
|..
T Consensus 150 n~~ 152 (176)
T 1a9n_A 150 VKL 152 (176)
T ss_dssp CCH
T ss_pred CCH
Confidence 654
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=4.1e-16 Score=122.42 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=93.6
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEecccc
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLFLVSC 83 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~l~~~ 83 (171)
++|++|+|++|.++. +| ..+++|+. ++++|.+++ +|. +.. +|++|++++|.+++ +| + +|++|++++|
T Consensus 80 ~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 80 PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPELPALLEYINADNN 150 (571)
T ss_dssp TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCCcCccccEEeCCCC
Confidence 456666666666653 34 33566666 677776663 555 443 67777777777665 44 5 7777777777
Q ss_pred cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccC-------ceEecccCc
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQL-------IILHLSQNS 156 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~ 156 (171)
.+++ +|. .+++|+.|++++|.+.+ +|. ++ ++|+.|++++|.++ .+|. +.. +| ++|++++|.
T Consensus 151 ~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 151 QLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred ccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence 7764 444 45678888888887774 666 55 78888888888877 5665 443 56 888888888
Q ss_pred cccccCcccccccCC
Q 040410 157 FRGRIKLDFELSKEF 171 (171)
Q Consensus 157 ~~~~~p~~~~~l~~L 171 (171)
+. .+|..+..+++|
T Consensus 219 l~-~lp~~l~~l~~L 232 (571)
T 3cvr_A 219 IT-HIPENILSLDPT 232 (571)
T ss_dssp CC-CCCGGGGGSCTT
T ss_pred ce-ecCHHHhcCCCC
Confidence 87 578777666654
No 115
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=107.45 Aligned_cols=120 Identities=24% Similarity=0.231 Sum_probs=93.0
Q ss_pred cEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccc
Q 040410 11 TYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSC 83 (171)
Q Consensus 11 ~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~ 83 (171)
++++++++.++. +|..+. +++++ ++++|.++ .+|..+..+++|++|++++|.+++..+ + +|++|++++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 678888888876 555443 57888 99999887 788888899999999999998875544 5 7888888888
Q ss_pred cccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccc
Q 040410 84 NFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 84 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 134 (171)
.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 887666667788888888888888887433345777888888888888765
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=1.9e-16 Score=103.84 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=96.2
Q ss_pred cchhhh-hcCCCccC-CcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccc
Q 040410 31 LRSLKE-DLSKNNSS-GELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNK 108 (171)
Q Consensus 31 l~~L~~-~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~ 108 (171)
.+++++ ++++|.+. +.+|..+..+++|++|++++|.+. + . ..++.+++|+.|++++|.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------------~-~-~~~~~l~~L~~L~Ls~n~ 75 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT------------------S-I-ANLPKLNKLKKLELSDNR 75 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC------------------C-C-TTCCCCTTCCEEECCSSC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC------------------C-c-hhhhcCCCCCEEECCCCc
Confidence 466777 77888776 567777777778888887777765 2 2 567888999999999999
Q ss_pred ccccccccccCCCCCceEecccCccchh-hhHHhhccccCceEecccCccccccC---cccccccCC
Q 040410 109 FSGELLASTKNLKSLEVLAINKCNFFNR-ILFLLRNLIQLIILHLSQNSFRGRIK---LDFELSKEF 171 (171)
Q Consensus 109 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L 171 (171)
+.+.+|..++.+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 76 i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 76 VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 9976888888899999999999999863 34778999999999999999986433 356666554
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=5.5e-18 Score=129.67 Aligned_cols=154 Identities=19% Similarity=0.149 Sum_probs=98.8
Q ss_pred cCCCCcEEEeecccccCCC-----CCccCCcchhhh-hcCCCccCCc----CCccCCCCCCCcEEEccCCcCCCccc---
Q 040410 6 KKKQHTYVRLQAKHYTGEL-----PFLSGNLRSLKE-DLSKNNSSGE----LPTSIGNLFPLKELDFLFNKLSSEFS--- 72 (171)
Q Consensus 6 ~l~~L~~L~L~~~~~~~~~-----~~~~~~l~~L~~-~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~--- 72 (171)
.+++|++|++++|.+++.. +..+..+++|++ ++++|.++.. ++..+..+++|++|++++|.+.+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 3455666666665554321 111223556666 6666665521 34445556777777777776643222
Q ss_pred -------c-ccceEeccccccccc----ChhhhhcCcCCcEEEcccccccccccccccC-----CCCCceEecccCccch
Q 040410 73 -------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTKN-----LKSLEVLAINKCNFFN 135 (171)
Q Consensus 73 -------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~-----l~~L~~L~l~~n~~~~ 135 (171)
. ++++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..++. .++|+.|++++|.+++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 2 677777777777644 3455666788888888888877655555543 5688888888888875
Q ss_pred ----hhhHHhhccccCceEecccCcccc
Q 040410 136 ----RILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 136 ----~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
.+|..+..+++|++|++++|.+.+
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 677777888888888888888764
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=8.8e-16 Score=103.50 Aligned_cols=126 Identities=17% Similarity=0.109 Sum_probs=95.7
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
.+.++++++.++. +|..+ .+++++ ++++|.+.+..+..+..+++|++|++++|.+++..+ + +|++|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 5788888888876 44333 368888 999999885444457889999999999998875443 5 788888888
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhh
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL 138 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 138 (171)
|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88886555567788889999998888874333445778888899998888876544
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.65 E-value=1.5e-15 Score=116.44 Aligned_cols=139 Identities=23% Similarity=0.204 Sum_probs=75.2
Q ss_pred cccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc--c-ccceEe
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS--C-SLKRLF 79 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~-~L~~L~ 79 (171)
+.++++|++|++++|.+++ +|..+ .+|++ ++++|.+. .+| .++.+++|++|++++|.+.+ +| . ++++|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEE
Confidence 4444555555555555443 23222 24455 55555554 244 36666677777777776664 33 3 677777
Q ss_pred cccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
+++|.+. .+| .++.+++|+.|++++|.+. .+|.. +.+|+.|++++|.+.+ +|.. .++|++|++++|.+.+
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc
Confidence 7777666 455 3666777777777777666 34432 2455555555555543 3321 2345555555555443
No 120
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.63 E-value=2.7e-18 Score=117.98 Aligned_cols=147 Identities=18% Similarity=0.220 Sum_probs=120.2
Q ss_pred cccCCCCcEEEeecccccCCCCC------ccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc----
Q 040410 4 QAKKKQHTYVRLQAKHYTGELPF------LSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS---- 72 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~~~~~------~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---- 72 (171)
+.....++.++++.+.+++..|. .+..+++|++ ++++|.+. .+| .+..+++|++|++++|.+. .+|
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44566777788888888776666 7888999999 99999998 477 7889999999999999988 445
Q ss_pred -c-ccceEecccccccccChhhhhcCcCCcEEEccccccccccc--ccccCCCCCceEecccCccchhhhH---------
Q 040410 73 -C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL--ASTKNLKSLEVLAINKCNFFNRILF--------- 139 (171)
Q Consensus 73 -~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~--------- 139 (171)
+ +|++|++++|.+.+ +| .++.+++|+.|++++|.+.+ ++ ..++.+++|++|++++|.+.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 5 89999999999985 45 68889999999999999884 33 4788999999999999998766543
Q ss_pred -HhhccccCceEecccCccc
Q 040410 140 -LLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 140 -~~~~~~~L~~L~l~~n~~~ 158 (171)
.+..+++|++|| ++.+.
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGT
T ss_pred HHHHhCCCcEEEC--CcccC
Confidence 378889999887 56654
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=1.3e-15 Score=120.80 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=56.9
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLS 153 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 153 (171)
+|++|++++|.+++ +| ..+++|+.|++++|.+. .+|. .+++|+.|++++|.+. .+|..+.++++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 56666666666653 43 34466777777777766 4555 4567778888888777 567777788888888888
Q ss_pred cCccccccCcccc
Q 040410 154 QNSFRGRIKLDFE 166 (171)
Q Consensus 154 ~n~~~~~~p~~~~ 166 (171)
+|.+.+..|..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 8887765555443
No 122
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=3.8e-17 Score=125.00 Aligned_cols=116 Identities=14% Similarity=0.050 Sum_probs=60.5
Q ss_pred CCCCcEEEccCCcCCCc----cc-----c-ccceEecccccccccChhhhhcC-----cCCcEEEccccccccc----cc
Q 040410 54 LFPLKELDFLFNKLSSE----FS-----C-SLKRLFLVSCNFWEKVPHSINNF-----ARLQWYDLVFNKFSGE----LL 114 (171)
Q Consensus 54 l~~L~~L~l~~~~~~~~----~~-----~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~----~~ 114 (171)
+++|++|++++|.++.. ++ + +|++|++++|.+.+..+..+... ++|+.|++++|.+.+. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 45555555555555432 12 3 45555555555543333222221 3566666666555533 34
Q ss_pred ccccCCCCCceEecccCccchhhhHHhhc-----cccCceEecccCcccc----ccCccccccc
Q 040410 115 ASTKNLKSLEVLAINKCNFFNRILFLLRN-----LIQLIILHLSQNSFRG----RIKLDFELSK 169 (171)
Q Consensus 115 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~p~~~~~l~ 169 (171)
..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+.+ .+|..+..++
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 44555567777777777666544443332 4567777777777663 4454444443
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.6e-15 Score=99.65 Aligned_cols=115 Identities=19% Similarity=0.177 Sum_probs=85.5
Q ss_pred CCCcEEEccCCcCC-Cccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEe
Q 040410 55 FPLKELDFLFNKLS-SEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLA 127 (171)
Q Consensus 55 ~~L~~L~l~~~~~~-~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~ 127 (171)
++|++|++++|.+. +.+| + +|++|++++|.+.+. ..++.+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45556666665554 3333 3 566666666666543 6788899999999999999976888888899999999
Q ss_pred cccCccchh-hhHHhhccccCceEecccCccccccC---cccccccCC
Q 040410 128 INKCNFFNR-ILFLLRNLIQLIILHLSQNSFRGRIK---LDFELSKEF 171 (171)
Q Consensus 128 l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~p---~~~~~l~~L 171 (171)
+++|.+.+. .+..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 999999853 22678899999999999999986433 256666654
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.59 E-value=1.5e-14 Score=114.71 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=73.1
Q ss_pred CCCcEEEccCCcCCCccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCc
Q 040410 55 FPLKELDFLFNKLSSEFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 55 ~~L~~L~l~~~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 132 (171)
++|+.|++++|.+++..+ . +|+.|++++|.+. .+|. .+++|+.|++++|.+. .+| ..+++|+.|++++|.
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNR 252 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSC
T ss_pred CCCcEEECCCCCCCCCCCccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCC
Confidence 555555666555553222 3 5666666666655 2332 2367888888888887 456 455789999999998
Q ss_pred cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
+. .+|. .+++|++|++++|.+. .+|..+..+++|
T Consensus 253 L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L 286 (622)
T 3g06_A 253 LT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE 286 (622)
T ss_dssp CS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred CC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence 87 4665 6788999999999998 788888887765
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=7.2e-15 Score=115.52 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=78.1
Q ss_pred hhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410 34 LKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF 106 (171)
Q Consensus 34 L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 106 (171)
|+. ++++|.++ .+|. +..+++|+.|++++|.++ .+| + +|++|++++|.+++ +| .++.+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 444 55555554 3443 555555555555555555 333 3 55555555555654 66 789999999999999
Q ss_pred ccccccc-cccccCCCCCceEecccCccchhhh---HHhhccccCceEec
Q 040410 107 NKFSGEL-LASTKNLKSLEVLAINKCNFFNRIL---FLLRNLIQLIILHL 152 (171)
Q Consensus 107 n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l 152 (171)
|.+.+.. |..++.+++|+.|++++|.+.+..| ..+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9998654 8899999999999999999886433 23445788888863
No 126
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.58 E-value=3.7e-17 Score=112.29 Aligned_cols=131 Identities=21% Similarity=0.167 Sum_probs=108.4
Q ss_pred CCcchhhh-hcCCCccCCcCCc------cCCCCCCCcEEEccCCcCCCccc----c-ccceEecccccccccChhhhhcC
Q 040410 29 GNLRSLKE-DLSKNNSSGELPT------SIGNLFPLKELDFLFNKLSSEFS----C-SLKRLFLVSCNFWEKVPHSINNF 96 (171)
Q Consensus 29 ~~l~~L~~-~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~----~-~L~~L~l~~~~~~~~~~~~~~~l 96 (171)
.....++. +++.+.+.+..|. .+..+++|++|++++|.+.+ +| + +|++|++++|.+. .+|..+..+
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 33455666 7777777766665 78889999999999999886 55 6 8999999999998 678788888
Q ss_pred cCCcEEEcccccccccccccccCCCCCceEecccCccchhhh-HHhhccccCceEecccCccccccCc
Q 040410 97 ARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRIL-FLLRNLIQLIILHLSQNSFRGRIKL 163 (171)
Q Consensus 97 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~p~ 163 (171)
++|+.|++++|.+.+ +| .++.+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..|.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999999984 56 68899999999999999985322 4788999999999999999766554
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.3e-14 Score=95.72 Aligned_cols=108 Identities=20% Similarity=0.085 Sum_probs=91.6
Q ss_pred CCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEe
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLF 79 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~ 79 (171)
.++|++|++++|.+++..+..+..+++|++ ++++|.+++..+..+..+++|++|++++|.+++..+ + +|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 468999999999999866667899999999 999999985444557899999999999999986554 5 899999
Q ss_pred cccccccccChhhhhcCcCCcEEEccccccccccc
Q 040410 80 LVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL 114 (171)
Q Consensus 80 l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 114 (171)
+++|.+++..+..+..+++|+.+++++|++.+..+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999986555556889999999999999876544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.3e-14 Score=97.20 Aligned_cols=121 Identities=19% Similarity=0.125 Sum_probs=104.6
Q ss_pred hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410 35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN 107 (171)
Q Consensus 35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n 107 (171)
+. +.+++.+. .+|..+. ++++.|++++|.++ .+| + +|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45 88889887 7887653 68999999999987 444 5 8999999999999777778999999999999999
Q ss_pred cccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcccc
Q 040410 108 KFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9996666789999999999999999986545568899999999999999863
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=5.1e-14 Score=104.53 Aligned_cols=161 Identities=17% Similarity=0.041 Sum_probs=111.7
Q ss_pred CCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCc-cCCCCCCCcE-EEccCCcCCCccc-----c-ccceE
Q 040410 8 KQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPT-SIGNLFPLKE-LDFLFNKLSSEFS-----C-SLKRL 78 (171)
Q Consensus 8 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~-~~~~l~~L~~-L~l~~~~~~~~~~-----~-~L~~L 78 (171)
+++++|+|++|.++...+..|..+++|++ ++++|.+.+.+|. .|.++++++. +.+..|++....| + +|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 46888888888888755567888888888 8888887655554 4677887765 4556677764433 5 78888
Q ss_pred ecccccccccChhhhhcCcCCcEEEcccc-ccccccc-ccccCC-CCCceEecccCccchhhhHHhhccccCceEeccc-
Q 040410 79 FLVSCNFWEKVPHSINNFARLQWYDLVFN-KFSGELL-ASTKNL-KSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQ- 154 (171)
Q Consensus 79 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~-~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~- 154 (171)
++++|++....+..+....++..+++.++ .+. .++ ..+..+ ..++.|++++|.+. .++.......+++++++.+
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTC
T ss_pred cccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccC
Confidence 88888887554445556667778887653 454 444 345555 46888999999988 4665555667899999875
Q ss_pred CccccccCc-ccccccCC
Q 040410 155 NSFRGRIKL-DFELSKEF 171 (171)
Q Consensus 155 n~~~~~~p~-~~~~l~~L 171 (171)
|.+. .+|. .|..+++|
T Consensus 188 n~l~-~i~~~~f~~l~~L 204 (350)
T 4ay9_X 188 NNLE-ELPNDVFHGASGP 204 (350)
T ss_dssp TTCC-CCCTTTTTTEECC
T ss_pred Cccc-CCCHHHhccCccc
Confidence 5554 5664 45666554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=4.5e-14 Score=95.06 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=81.0
Q ss_pred CCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccc-cccCCCCCce
Q 040410 53 NLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLA-STKNLKSLEV 125 (171)
Q Consensus 53 ~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L~~ 125 (171)
..++|+.|++++|.+... + . ++++|++++|.+.+. ..++.+++|+.|++++|.+. .+|. .++.+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 344555555555554422 2 2 455555555555543 46788999999999999998 4564 4489999999
Q ss_pred EecccCccchhhhH--HhhccccCceEecccCccccccCcc----cccccCC
Q 040410 126 LAINKCNFFNRILF--LLRNLIQLIILHLSQNSFRGRIKLD----FELSKEF 171 (171)
Q Consensus 126 L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~p~~----~~~l~~L 171 (171)
|++++|.+. .+|. .+..+++|++|++++|.+. .+|.. +..+++|
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 999999996 4665 7889999999999999997 45664 6666543
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=1.2e-13 Score=92.49 Aligned_cols=100 Identities=19% Similarity=0.096 Sum_probs=75.1
Q ss_pred hhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEccc
Q 040410 34 LKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVF 106 (171)
Q Consensus 34 L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 106 (171)
.++ ++++|.+. .+|..+ .+++++|++++|.+++..| + +|++|++++|++.+..+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456 88888887 678766 3788999999998886544 5 788888888888755555667788888888888
Q ss_pred ccccccccccccCCCCCceEecccCccchh
Q 040410 107 NKFSGELLASTKNLKSLEVLAINKCNFFNR 136 (171)
Q Consensus 107 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 136 (171)
|.+.+..+..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 888744444577788888888888877543
No 132
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=2e-15 Score=113.11 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=114.9
Q ss_pred CCCCcEEEeecccccCCCCCccCCc-----chhhh-hcCCCccCCcCCccC-CCCCCCcEEEccCCcCCCccc-------
Q 040410 7 KKQHTYVRLQAKHYTGELPFLSGNL-----RSLKE-DLSKNNSSGELPTSI-GNLFPLKELDFLFNKLSSEFS------- 72 (171)
Q Consensus 7 l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~-~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~------- 72 (171)
++.|++|+|++|.++......++.. .+|++ ++++|.+.......+ ..+++|+.|++++|.++....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999876433333332 68999 999998863322222 346789999999999875322
Q ss_pred ---c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh----
Q 040410 73 ---C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR---- 136 (171)
Q Consensus 73 ---~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~---- 136 (171)
. +|++|++++|.+++. ++..+...++|++|++++|.+.+. ++..+...++|+.|++++|.++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3 699999999998743 344556788999999999998754 355667778999999999999753
Q ss_pred hhHHhhccccCceEecccCcccc
Q 040410 137 ILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 137 ~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
++.++...++|++|++++|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 44455667899999999999864
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=2.8e-13 Score=91.17 Aligned_cols=98 Identities=16% Similarity=0.124 Sum_probs=72.5
Q ss_pred hh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCcEEEcccc
Q 040410 35 KE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFN 107 (171)
Q Consensus 35 ~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n 107 (171)
+. ++++|.+. .+|..+. ++|++|++++|.+.+..| + +|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45 78888886 7787664 789999999998886544 5 7888888888887544445677788888888888
Q ss_pred cccccccccccCCCCCceEecccCccch
Q 040410 108 KFSGELLASTKNLKSLEVLAINKCNFFN 135 (171)
Q Consensus 108 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 135 (171)
.+.+..+..+..+++|++|++++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8874333347778888888888887764
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=6.2e-13 Score=89.06 Aligned_cols=101 Identities=20% Similarity=0.124 Sum_probs=85.6
Q ss_pred CCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEecc
Q 040410 9 QHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLV 81 (171)
Q Consensus 9 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~ 81 (171)
..++++++++.++. +|..+. ++++. ++++|.+++..|..|..+++|++|++++|++++..+ + +|++|+++
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999987 565553 78899 999999986667789999999999999999986554 5 89999999
Q ss_pred cccccccChhhhhcCcCCcEEEccccccccc
Q 040410 82 SCNFWEKVPHSINNFARLQWYDLVFNKFSGE 112 (171)
Q Consensus 82 ~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 112 (171)
+|++.+..+..+..+++|+.|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999976666789999999999999988743
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=1.3e-12 Score=87.79 Aligned_cols=99 Identities=21% Similarity=0.159 Sum_probs=83.6
Q ss_pred CcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-----c-ccceEeccc
Q 040410 10 HTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS-----C-SLKRLFLVS 82 (171)
Q Consensus 10 L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~ 82 (171)
-+.++++++.++. +|..+. ++|++ ++++|.+.+..|..+..+++|++|++++|++++..+ + +|++|++++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 3789999999876 566554 78999 999999986667789999999999999999986543 5 899999999
Q ss_pred ccccccChhhhhcCcCCcEEEcccccccc
Q 040410 83 CNFWEKVPHSINNFARLQWYDLVFNKFSG 111 (171)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 111 (171)
|.+.+..+..+..+++|+.|++++|++..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996555568999999999999999873
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=2.5e-12 Score=94.60 Aligned_cols=162 Identities=10% Similarity=-0.074 Sum_probs=106.0
Q ss_pred CCCCcEEEeeccccc--------------------CCCCCccCC--------cchhhh-hcCCCccCCcCCccCCCCCCC
Q 040410 7 KKQHTYVRLQAKHYT--------------------GELPFLSGN--------LRSLKE-DLSKNNSSGELPTSIGNLFPL 57 (171)
Q Consensus 7 l~~L~~L~L~~~~~~--------------------~~~~~~~~~--------l~~L~~-~l~~~~~~~~~~~~~~~l~~L 57 (171)
+++|++|||++|.+. ...+..|.. +.+|+. ++.. .+...-...|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 678899999988877 112334556 788888 8877 6653233457788888
Q ss_pred cEEEccCCcCCCccc-----------------------------------------------------------------
Q 040410 58 KELDFLFNKLSSEFS----------------------------------------------------------------- 72 (171)
Q Consensus 58 ~~L~l~~~~~~~~~~----------------------------------------------------------------- 72 (171)
+.++++.|.+....+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 888888775421100
Q ss_pred ------------------c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCc-eEecccCc
Q 040410 73 ------------------C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLE-VLAINKCN 132 (171)
Q Consensus 73 ------------------~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~-~L~l~~n~ 132 (171)
+ +|+++++.+|++...-...|..+.+|+.+++..| +..-.+..|.++.+|+ .+.++. .
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~ 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c
Confidence 3 4666666666666444456777777777777776 4422335667777777 777776 4
Q ss_pred cchhhhHHhhccccCceEecccCccccccCcccccccCC
Q 040410 133 FFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSKEF 171 (171)
Q Consensus 133 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~~L 171 (171)
+...-+.+|..+++|+.+++..|.+..--+..|..+++|
T Consensus 285 l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 285 VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 443334678888888888888887765444566666554
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=2.8e-13 Score=106.56 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=105.5
Q ss_pred cCCCCcEEEeec-----------ccccCCC-CCccCCcchhhh-hcCCCccCCcCCccCCC-CCCCcEEEcc----CCcC
Q 040410 6 KKKQHTYVRLQA-----------KHYTGEL-PFLSGNLRSLKE-DLSKNNSSGELPTSIGN-LFPLKELDFL----FNKL 67 (171)
Q Consensus 6 ~l~~L~~L~L~~-----------~~~~~~~-~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~~~~ 67 (171)
.+++|++|++++ +.+++.. +.....+++|+. ++..+.+++..+..+.. +++|+.|++. .+.+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 456677777762 3343221 111234667777 77666666444444444 7788888885 5566
Q ss_pred CCc-----cc-----c-ccceEeccccc--ccccChhhhhc-CcCCcEEEcccccccc-cccccccCCCCCceEecccCc
Q 040410 68 SSE-----FS-----C-SLKRLFLVSCN--FWEKVPHSINN-FARLQWYDLVFNKFSG-ELLASTKNLKSLEVLAINKCN 132 (171)
Q Consensus 68 ~~~-----~~-----~-~L~~L~l~~~~--~~~~~~~~~~~-l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~ 132 (171)
++. ++ + +|++|+++.|. +++.....++. +++|+.|++++|.+++ .++..+..+++|+.|++++|.
T Consensus 420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence 642 22 6 88899887543 55555555544 7889999999998875 345556788999999999999
Q ss_pred cchh-hhHHhhccccCceEecccCccccc
Q 040410 133 FFNR-ILFLLRNLIQLIILHLSQNSFRGR 160 (171)
Q Consensus 133 ~~~~-~~~~~~~~~~L~~L~l~~n~~~~~ 160 (171)
+++. ++.....+++|++|++++|.+++.
T Consensus 500 l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 500 FSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 8755 445567789999999999998754
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.30 E-value=2.3e-13 Score=107.00 Aligned_cols=95 Identities=17% Similarity=0.189 Sum_probs=45.8
Q ss_pred CcEEEeeccc-ccC-CCCCccCCcchhhh-hcCCCccCCc----CCccCCCCCCCcEEEccCCcCCC----ccc-----c
Q 040410 10 HTYVRLQAKH-YTG-ELPFLSGNLRSLKE-DLSKNNSSGE----LPTSIGNLFPLKELDFLFNKLSS----EFS-----C 73 (171)
Q Consensus 10 L~~L~L~~~~-~~~-~~~~~~~~l~~L~~-~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~-----~ 73 (171)
|++|++++|. ++. .++.....+++|++ ++++|.+.+. ++..+..+++|++|++++|.+++ .++ +
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 111 01112224556666 6666655422 12223345566666666665541 111 4
Q ss_pred -ccceEecccccccccChhhhhcCcCCcEEEcc
Q 040410 74 -SLKRLFLVSCNFWEKVPHSINNFARLQWYDLV 105 (171)
Q Consensus 74 -~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~ 105 (171)
+|++|++++|.+.+ ++..+..+++|+.++++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG 251 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence 56666666655542 44444445555555544
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.4e-11 Score=91.10 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=64.3
Q ss_pred EEeecc-cccCCCCCccCCcchhhh-hcCC-CccCCcCCccCCCCCCCcEEEccCCcCCCccccccceEecccccccccC
Q 040410 13 VRLQAK-HYTGELPFLSGNLRSLKE-DLSK-NNSSGELPTSIGNLFPLKELDFLFNKLSSEFSCSLKRLFLVSCNFWEKV 89 (171)
Q Consensus 13 L~L~~~-~~~~~~~~~~~~l~~L~~-~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 89 (171)
++++++ .++. +|. +..+.+|++ ++++ |.+.+..+..|..+++|++|+|++|. +.+..
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~------------------l~~~~ 72 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG------------------LRFVA 72 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC------------------CCEEC
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc------------------cceeC
Confidence 455554 4444 444 555555555 5553 55543223345555555555555555 44566
Q ss_pred hhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccch
Q 040410 90 PHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFN 135 (171)
Q Consensus 90 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 135 (171)
|..|+.+++|+.|++++|.+. .+|..+.....|+.|++.+|.+..
T Consensus 73 ~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 73 PDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp TTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred HHHhcCCcCCCEEeCCCCccc-eeCHHHcccCCceEEEeeCCCccC
Confidence 778889999999999999998 455444333349999999998864
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=4.4e-11 Score=88.40 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=69.1
Q ss_pred hcCCC-ccCCcCCccCCCCCCCcEEEccC-CcCCCccccccceEecccccccccChhhhhcCcCCcEEEccccccccccc
Q 040410 37 DLSKN-NSSGELPTSIGNLFPLKELDFLF-NKLSSEFSCSLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELL 114 (171)
Q Consensus 37 ~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~ 114 (171)
+.+++ .+. .+|. +..+++|++|++++ |.+. +..+..|+.+++|+.|++++|.+.+..|
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ------------------HLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC------------------EECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC------------------CcChhHhccccCCCEEECCCCccceeCH
Confidence 55555 665 5777 77777777777775 6655 2334567777778888888887776666
Q ss_pred ccccCCCCCceEecccCccchhhhHHhhccccCceEecccCccc
Q 040410 115 ASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 115 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
..|+++++|++|++++|.+.+..+..+..++ |++|++.+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6777778888888888877753333444444 778888777765
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.17 E-value=1.5e-12 Score=102.45 Aligned_cols=36 Identities=19% Similarity=0.077 Sum_probs=15.0
Q ss_pred CCCCceEecccCccchhhh-HHhhccccCceEecccC
Q 040410 120 LKSLEVLAINKCNFFNRIL-FLLRNLIQLIILHLSQN 155 (171)
Q Consensus 120 l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n 155 (171)
+++|++|++++|.+.+... ..+..+++|++|++++|
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 3444444444444332211 12334444555554444
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=5.1e-12 Score=94.60 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=96.8
Q ss_pred chhhh-hcCCCccCCcCCcc----CC-CCCCCcEEEccCCcCCCccc------c-ccceEecccccccccChhhhh----
Q 040410 32 RSLKE-DLSKNNSSGELPTS----IG-NLFPLKELDFLFNKLSSEFS------C-SLKRLFLVSCNFWEKVPHSIN---- 94 (171)
Q Consensus 32 ~~L~~-~l~~~~~~~~~~~~----~~-~l~~L~~L~l~~~~~~~~~~------~-~L~~L~l~~~~~~~~~~~~~~---- 94 (171)
+.++. ++++|.++...... +. ..++|+.|++++|.++.... + ++++|++++|.+++.....+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56778 88999886332222 22 23689999999999875432 5 899999999999765444442
Q ss_pred -cCcCCcEEEccccccccc----ccccccCCCCCceEecccCccchh----hhHHhhccccCceEecccCcccc
Q 040410 95 -NFARLQWYDLVFNKFSGE----LLASTKNLKSLEVLAINKCNFFNR----ILFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 95 -~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
..++|++|++++|.+... ++..+...++|++|++++|.+... ++..+...++|++|++++|.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 357899999999998753 445557789999999999998753 35566778899999999999874
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.12 E-value=2.9e-12 Score=100.76 Aligned_cols=84 Identities=24% Similarity=0.262 Sum_probs=54.9
Q ss_pred ccceEecccccccccChhhhhc-CcCCcEEEcccccccccccccc-cCCCCCceEecccCccchhhhH-HhhccccCceE
Q 040410 74 SLKRLFLVSCNFWEKVPHSINN-FARLQWYDLVFNKFSGELLAST-KNLKSLEVLAINKCNFFNRILF-LLRNLIQLIIL 150 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L 150 (171)
+|+.|++++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|++|
T Consensus 433 ~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 433 DLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp TCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 677777755 454444444444 6778888888777765545444 4577788888888877544333 33457778888
Q ss_pred ecccCccc
Q 040410 151 HLSQNSFR 158 (171)
Q Consensus 151 ~l~~n~~~ 158 (171)
++++|.+.
T Consensus 512 ~l~~~~~~ 519 (594)
T 2p1m_B 512 WMSSCSVS 519 (594)
T ss_dssp EEESSCCB
T ss_pred eeeCCCCC
Confidence 88887764
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.04 E-value=5.4e-10 Score=82.10 Aligned_cols=96 Identities=13% Similarity=-0.014 Sum_probs=78.2
Q ss_pred CCCCcEEEccCCcCCCccc-----c-ccceEecccccccccChhhhhcCcCCc-EEEcccccccccccccccCCCCCceE
Q 040410 54 LFPLKELDFLFNKLSSEFS-----C-SLKRLFLVSCNFWEKVPHSINNFARLQ-WYDLVFNKFSGELLASTKNLKSLEVL 126 (171)
Q Consensus 54 l~~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~~~~~~~~~~~~l~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~L 126 (171)
+++|+.++++.|.+....+ | +|+++.+..| +...-+..|..+.+|+ .+.+.. .+..-.+..|.++.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6789999999988773322 7 9999999988 6656667899999999 999988 5653345788999999999
Q ss_pred ecccCccchhhhHHhhccccCceEe
Q 040410 127 AINKCNFFNRILFLLRNLIQLIILH 151 (171)
Q Consensus 127 ~l~~n~~~~~~~~~~~~~~~L~~L~ 151 (171)
++..|.+...-+.+|.++++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999988865556899999999875
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=4.6e-10 Score=83.68 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=100.8
Q ss_pred cccCCCCcEEEeecccccC---------CCCCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCccc-
Q 040410 4 QAKKKQHTYVRLQAKHYTG---------ELPFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSEFS- 72 (171)
Q Consensus 4 ~~~l~~L~~L~L~~~~~~~---------~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 72 (171)
+.++++|+.|.+....... .+...+..+++|+. .+++|.-. .+++ + .+++|++|++..|.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4567899999886543211 12233456788999 99887422 3444 4 38899999999888764321
Q ss_pred ------c-ccceEeccc--cccccc-----Chhhh--hcCcCCcEEEccccccccccccccc---CCCCCceEecccCcc
Q 040410 73 ------C-SLKRLFLVS--CNFWEK-----VPHSI--NNFARLQWYDLVFNKFSGELLASTK---NLKSLEVLAINKCNF 133 (171)
Q Consensus 73 ------~-~L~~L~l~~--~~~~~~-----~~~~~--~~l~~L~~l~l~~n~~~~~~~~~~~---~l~~L~~L~l~~n~~ 133 (171)
+ +|+.|.+.. +...+. +...+ +.+++|+.|++.+|.+.+..+..+. .+++|++|+++.|.+
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 5 788888753 221111 11122 3468999999999888755444443 478999999999988
Q ss_pred chhh----hHHhhccccCceEecccCcccc
Q 040410 134 FNRI----LFLLRNLIQLIILHLSQNSFRG 159 (171)
Q Consensus 134 ~~~~----~~~~~~~~~L~~L~l~~n~~~~ 159 (171)
.+.. +..+..+++|+.|++++|.+..
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 7643 3334567889999999998763
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.91 E-value=1.8e-09 Score=73.06 Aligned_cols=109 Identities=17% Similarity=0.089 Sum_probs=80.3
Q ss_pred cCCCCCCCcEEEccCC-cCCCccc---------c-ccceEeccccccccc----ChhhhhcCcCCcEEEccccccccc--
Q 040410 50 SIGNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCNFWEK----VPHSINNFARLQWYDLVFNKFSGE-- 112 (171)
Q Consensus 50 ~~~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~-- 112 (171)
.+...+.|++|++++| .+..... . ++++|++++|.+.+. +...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3455678888888888 7764321 3 688888888888643 334455567899999999998764
Q ss_pred --ccccccCCCCCceEec--ccCccchh----hhHHhhccccCceEecccCccc
Q 040410 113 --LLASTKNLKSLEVLAI--NKCNFFNR----ILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 113 --~~~~~~~l~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
+.+.+...++|++|++ ++|.+..+ +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4556677789999999 88988764 3445556688999999999875
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=1.9e-09 Score=80.40 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=102.6
Q ss_pred ccCCCCcEEEeecccccCCCCCccCCcchhhh-hcCCCccCCcCCccCC--CCCCCcEEEccC--CcCCCc---------
Q 040410 5 AKKKQHTYVRLQAKHYTGELPFLSGNLRSLKE-DLSKNNSSGELPTSIG--NLFPLKELDFLF--NKLSSE--------- 70 (171)
Q Consensus 5 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~~~~~~~~~--~l~~L~~L~l~~--~~~~~~--------- 70 (171)
..+++|+.|++++|.-. .++. + .+++|++ ++..|.+.......+. .+|+|+.|+++. +...+.
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 45789999999987421 2333 3 3789999 9988877533222333 689999999853 211111
Q ss_pred cc---c-ccceEecccccccccChhhhh---cCcCCcEEEcccccccccc----cccccCCCCCceEecccCccchhhhH
Q 040410 71 FS---C-SLKRLFLVSCNFWEKVPHSIN---NFARLQWYDLVFNKFSGEL----LASTKNLKSLEVLAINKCNFFNRILF 139 (171)
Q Consensus 71 ~~---~-~L~~L~l~~~~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~ 139 (171)
+. + +|++|++.+|.+.+..+..+. .+++|++|+++.|.+.+.. +..+..+++|+.|++++|.++.....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 11 5 899999999988754444443 5789999999999988643 44445678999999999998866555
Q ss_pred HhhccccCceEecccCc
Q 040410 140 LLRNLIQLIILHLSQNS 156 (171)
Q Consensus 140 ~~~~~~~L~~L~l~~n~ 156 (171)
.+...- ...++++.+.
T Consensus 326 ~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 326 ELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHC-CSEEECCSBC
T ss_pred HHHHHc-CCEEEecCCc
Confidence 555421 3568888776
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=1.4e-07 Score=71.26 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=41.8
Q ss_pred ccceEeccccccc-----ccChhhhhcCcCCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCc
Q 040410 74 SLKRLFLVSCNFW-----EKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI 148 (171)
Q Consensus 74 ~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 148 (171)
+|+.+.+.++... ......|..+++|+.+.+.. .+..-....|.++.+|+.+.+..+ +...-..+|.++ +|+
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~ 348 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK 348 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC
Confidence 4555555444332 12233455555555555553 233122244555666666666444 332223456666 777
Q ss_pred eEecccCccc
Q 040410 149 ILHLSQNSFR 158 (171)
Q Consensus 149 ~L~l~~n~~~ 158 (171)
.+++.+|...
T Consensus 349 ~l~l~~n~~~ 358 (401)
T 4fdw_A 349 EVKVEGTTPP 358 (401)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcCCCCc
Confidence 7777776654
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=4e-08 Score=65.68 Aligned_cols=76 Identities=8% Similarity=0.136 Sum_probs=33.1
Q ss_pred CCcEEEccCCcCCCccc-----c-ccceEeccccc-ccccChhhhhcC----cCCcEEEccccc-ccccccccccCCCCC
Q 040410 56 PLKELDFLFNKLSSEFS-----C-SLKRLFLVSCN-FWEKVPHSINNF----ARLQWYDLVFNK-FSGELLASTKNLKSL 123 (171)
Q Consensus 56 ~L~~L~l~~~~~~~~~~-----~-~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~l~l~~n~-~~~~~~~~~~~l~~L 123 (171)
+|+.||+++|.++...- + +|++|++++|. +++..-..+..+ ++|++|++++|. +++..-..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 56666666665543211 3 44444444442 333333333332 234444444432 433333334444444
Q ss_pred ceEecccC
Q 040410 124 EVLAINKC 131 (171)
Q Consensus 124 ~~L~l~~n 131 (171)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=3.8e-07 Score=68.85 Aligned_cols=80 Identities=11% Similarity=-0.049 Sum_probs=42.4
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEccccccc-----ccccccccCCCCCceEecccCccchhhhHHhhccccCc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS-----GELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLI 148 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 148 (171)
+|+.+.+. +++...-...|..+++|+.+.+.++.+. .-....|.++.+|+.+.+.. .+...-..+|.++++|+
T Consensus 249 ~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~ 326 (401)
T 4fdw_A 249 GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVT 326 (401)
T ss_dssp CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCC
T ss_pred CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCcc
Confidence 34444442 2233233445566666777766655432 11224555666777777663 34322334566777777
Q ss_pred eEecccC
Q 040410 149 ILHLSQN 155 (171)
Q Consensus 149 ~L~l~~n 155 (171)
.+.+..+
T Consensus 327 ~l~lp~~ 333 (401)
T 4fdw_A 327 QLTIPAN 333 (401)
T ss_dssp EEEECTT
T ss_pred EEEECcc
Confidence 7776544
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=9.1e-09 Score=69.63 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=77.8
Q ss_pred cCCcchhhh-hcCCC-ccCC----cCCccCCCCCCCcEEEccCCcCCCccc---------c-ccceEeccccccccc---
Q 040410 28 SGNLRSLKE-DLSKN-NSSG----ELPTSIGNLFPLKELDFLFNKLSSEFS---------C-SLKRLFLVSCNFWEK--- 88 (171)
Q Consensus 28 ~~~l~~L~~-~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~---------~-~L~~L~l~~~~~~~~--- 88 (171)
+...+.|++ ++++| .+.. .+...+...++|++|++++|.+..... . +|++|++++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566777 77777 6642 133445567788999999998864322 3 789999999988754
Q ss_pred -ChhhhhcCcCCcEEEc--ccccccccc----cccccCCCCCceEecccCccch
Q 040410 89 -VPHSINNFARLQWYDL--VFNKFSGEL----LASTKNLKSLEVLAINKCNFFN 135 (171)
Q Consensus 89 -~~~~~~~l~~L~~l~l--~~n~~~~~~----~~~~~~l~~L~~L~l~~n~~~~ 135 (171)
+...+...++|++|++ ++|.+.... .+.+...++|++|++++|.+..
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3445566788999999 889988654 3445566899999999998863
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=9.9e-08 Score=68.10 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=40.0
Q ss_pred ccceEecccccccc--cChhhhhcCcCCcEEEcccccccccccccccCCC--CCceEecccCccchhhh-------HHhh
Q 040410 74 SLKRLFLVSCNFWE--KVPHSINNFARLQWYDLVFNKFSGELLASTKNLK--SLEVLAINKCNFFNRIL-------FLLR 142 (171)
Q Consensus 74 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~-------~~~~ 142 (171)
+|++|++++|++.+ .++..+..+++|+.|++++|.+.+. ..+..++ +|+.|++.+|.+.+.+| ..+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 56666666666654 2334455566666666666665532 2233333 56666666666554322 2344
Q ss_pred ccccCceEe
Q 040410 143 NLIQLIILH 151 (171)
Q Consensus 143 ~~~~L~~L~ 151 (171)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 555555554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=5.7e-07 Score=64.19 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=55.2
Q ss_pred hcCcCCcEEEcccccccc--cccccccCCCCCceEecccCccchhhhHHhhccc--cCceEecccCccccccC
Q 040410 94 NNFARLQWYDLVFNKFSG--ELLASTKNLKSLEVLAINKCNFFNRILFLLRNLI--QLIILHLSQNSFRGRIK 162 (171)
Q Consensus 94 ~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~p 162 (171)
..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+. ..+..++ +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 568899999999999986 5567777899999999999999854 3345555 89999999999987665
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.39 E-value=3.6e-07 Score=61.10 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=69.7
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEccccc-ccccccccccCC----CCCceEecccCc-cchhhhHHhhccccC
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNK-FSGELLASTKNL----KSLEVLAINKCN-FFNRILFLLRNLIQL 147 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~~L 147 (171)
.|++|++++|.+++..-..+..+++|++|++++|. +++..-..++.+ ++|++|++++|. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 79999999999987766778889999999999985 776666777765 479999999985 776655678889999
Q ss_pred ceEecccCc
Q 040410 148 IILHLSQNS 156 (171)
Q Consensus 148 ~~L~l~~n~ 156 (171)
++|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999986
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.92 E-value=1.6e-05 Score=54.01 Aligned_cols=107 Identities=19% Similarity=0.166 Sum_probs=75.1
Q ss_pred CCCCCCcEEEccCC-cCCCccc---------c-ccceEecccccccccChh----hhhcCcCCcEEEcccccccccccc-
Q 040410 52 GNLFPLKELDFLFN-KLSSEFS---------C-SLKRLFLVSCNFWEKVPH----SINNFARLQWYDLVFNKFSGELLA- 115 (171)
Q Consensus 52 ~~l~~L~~L~l~~~-~~~~~~~---------~-~L~~L~l~~~~~~~~~~~----~~~~l~~L~~l~l~~n~~~~~~~~- 115 (171)
..-+.|+.|+++++ .+..... - .|+.|++++|.+.+.... .+..-+.|++|+++.|.+.+....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34568899999885 6653221 2 789999999998754333 344557899999999999865444
Q ss_pred ---cccCCCCCceEecccC---ccch----hhhHHhhccccCceEecccCccc
Q 040410 116 ---STKNLKSLEVLAINKC---NFFN----RILFLLRNLIQLIILHLSQNSFR 158 (171)
Q Consensus 116 ---~~~~l~~L~~L~l~~n---~~~~----~~~~~~~~~~~L~~L~l~~n~~~ 158 (171)
.+...+.|+.|++++| .+.. .+..++..-++|++|+++.|...
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4456678999999865 3343 24455666688999999887653
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.44 E-value=0.00072 Score=50.62 Aligned_cols=115 Identities=17% Similarity=0.095 Sum_probs=68.6
Q ss_pred cCCCCCCCcEEEccCCcCCCc-cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCCceE
Q 040410 50 SIGNLFPLKELDFLFNKLSSE-FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVL 126 (171)
Q Consensus 50 ~~~~l~~L~~L~l~~~~~~~~-~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L 126 (171)
.+.....++.+......+... +. + +|+.+.+..+ +...-...|..+.+|+.+++..+ +..-....|.++.+|+.+
T Consensus 271 ~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i 348 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNI 348 (394)
T ss_dssp TTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEE
Confidence 344555555555544432211 11 5 7777776544 44334456777888888888644 432223567788889998
Q ss_pred ecccCccchhhhHHhhccccCceEecccCccccccCccccccc
Q 040410 127 AINKCNFFNRILFLLRNLIQLIILHLSQNSFRGRIKLDFELSK 169 (171)
Q Consensus 127 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~p~~~~~l~ 169 (171)
.+..+ +...-..+|..+++|+.+++..+-- .+...|..++
T Consensus 349 ~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~--~~~~~F~~c~ 388 (394)
T 4fs7_A 349 NFPLS-LRKIGANAFQGCINLKKVELPKRLE--QYRYDFEDTT 388 (394)
T ss_dssp CCCTT-CCEECTTTBTTCTTCCEEEEEGGGG--GGGGGBCTTC
T ss_pred EECcc-ccEehHHHhhCCCCCCEEEECCCCE--EhhheecCCC
Confidence 88766 4433345788888999888876532 2233455444
No 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.41 E-value=0.00018 Score=48.87 Aligned_cols=82 Identities=12% Similarity=0.080 Sum_probs=62.0
Q ss_pred ccceEecccc-ccccc----ChhhhhcCcCCcEEEccccccccccccccc----CCCCCceEecccCccchhhh----HH
Q 040410 74 SLKRLFLVSC-NFWEK----VPHSINNFARLQWYDLVFNKFSGELLASTK----NLKSLEVLAINKCNFFNRIL----FL 140 (171)
Q Consensus 74 ~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~----~~ 140 (171)
.|++|+++++ .+.+. +.+.+..-+.|+.|++++|.+.+.....++ ..+.|++|+++.|.+...-. .+
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 6999999985 77643 344555667899999999999865555444 66899999999999986533 44
Q ss_pred hhccccCceEecccC
Q 040410 141 LRNLIQLIILHLSQN 155 (171)
Q Consensus 141 ~~~~~~L~~L~l~~n 155 (171)
+..-+.|++|++++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 555577999999865
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.09 E-value=0.0034 Score=46.94 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=67.4
Q ss_pred cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
.+..+.+|+.+.+..+ +... +. | +|+.+.+..+ +...-..+|..+.+|+.+.+..+ +..-....|.++.+|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4667889999988765 3211 22 7 8999988654 55444567888999999999766 442334678899999
Q ss_pred ceEecccCccchhhhHHhhccccCceE
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIIL 150 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L 150 (171)
+.+.++.+.- .+..+|.++++|+.+
T Consensus 369 ~~i~lp~~~~--~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKRLE--QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGGGG--GGGGGBCTTCEEEEE
T ss_pred CEEEECCCCE--EhhheecCCCCCcEE
Confidence 9999976532 334567788877764
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0019 Score=40.74 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=39.4
Q ss_pred ceEeccccccc-ccChhhhhcCcCCcEEEccccccccccc-ccccCCCCCceEecccCccc
Q 040410 76 KRLFLVSCNFW-EKVPHSINNFARLQWYDLVFNKFSGELL-ASTKNLKSLEVLAINKCNFF 134 (171)
Q Consensus 76 ~~L~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~ 134 (171)
..++.++++++ ..+|..+. .+++.|++++|.+. .+| ..+..+.+|+.|++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 34555666664 24554332 46899999999988 455 56678889999999998764
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.79 E-value=0.0085 Score=44.39 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=51.7
Q ss_pred cCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 50 SIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 50 ~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
.+.....|+.+.+..+ +... +. + +++.+.+..+ +.......|..+.+|+.+.+..+.+..-....|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3455666666666544 2111 11 4 5555555432 222223355566667776666555542223456666667
Q ss_pred ceEecccCccchhhhHHhhccccCceEeccc
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQ 154 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 154 (171)
+.+.+..+ +...-..+|.++++|+.+.+..
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 77666543 2212224566666666665543
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.70 E-value=0.0084 Score=44.78 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=66.8
Q ss_pred CCccCCcchhhh-hcCCCccCCcCCccCCCCCCCcEEEccCCcCCCc----cc-c-ccceEecccccccccChhhhhcCc
Q 040410 25 PFLSGNLRSLKE-DLSKNNSSGELPTSIGNLFPLKELDFLFNKLSSE----FS-C-SLKRLFLVSCNFWEKVPHSINNFA 97 (171)
Q Consensus 25 ~~~~~~l~~L~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~-~-~L~~L~l~~~~~~~~~~~~~~~l~ 97 (171)
...|.....|+. .+..+... .-...|..+++|+.+.+... +... +. | +|+.+.+..+ ++..-...|..+.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345556666666 66544322 22334667788888887643 2211 11 5 6777776543 3333445677777
Q ss_pred CCcEEEcccccccccccccccCCCCCceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 98 RLQWYDLVFNKFSGELLASTKNLKSLEVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 98 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
+|+.+.+..+ +..-....|.++.+|+.+++.++... -..+..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 8888877543 33222356777788888887775432 13455666777776655443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0062 Score=38.37 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=22.3
Q ss_pred ccceEecccccccccChhhhhcCcCCcEEEccccccc
Q 040410 74 SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFS 110 (171)
Q Consensus 74 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 110 (171)
++++|++++|+++..-+..|..+++|+.|++.+|++.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3444444444444333445667778888888887653
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.07 E-value=0.023 Score=42.36 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=74.9
Q ss_pred ccCCCCCCCcEEEccCCcCC---Cccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 49 TSIGNLFPLKELDFLFNKLS---SEFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 49 ~~~~~l~~L~~L~l~~~~~~---~~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
..|..+..|+.+.+..+... +.+. + .|+.+.+.. .+...-...|..+.+|+.+.+..+ +..-....|.++.+|
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 35777889999998765432 1111 6 888888863 344344557888899999999764 332224578899999
Q ss_pred ceEecccCccchhhhHHhhccccCceEecccCcc
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQNSF 157 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 157 (171)
+.+.+..+ +...-..+|.++++|+.+++.++..
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 99999765 3323346899999999999988754
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.87 E-value=0.077 Score=39.18 Aligned_cols=105 Identities=9% Similarity=0.028 Sum_probs=71.4
Q ss_pred ccCCCCCCCcEEEccCCcCC-C--ccc-c-ccceEecccccccccChhhhhcCcCCcEEEcccccccccccccccCCCCC
Q 040410 49 TSIGNLFPLKELDFLFNKLS-S--EFS-C-SLKRLFLVSCNFWEKVPHSINNFARLQWYDLVFNKFSGELLASTKNLKSL 123 (171)
Q Consensus 49 ~~~~~l~~L~~L~l~~~~~~-~--~~~-~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 123 (171)
..+....+++.+.+..+--. + .+- + .|+.+.+..+ +...-...+..+.+|+.+.+..+ +..-....+.++.+|
T Consensus 211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34556778888887654211 0 111 6 7888887654 44344456777888999988654 332223567788999
Q ss_pred ceEecccCccchhhhHHhhccccCceEecccC
Q 040410 124 EVLAINKCNFFNRILFLLRNLIQLIILHLSQN 155 (171)
Q Consensus 124 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 155 (171)
+.+.+..+.+...-..+|.++.+|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 99999888776444567999999999998754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.88 E-value=30 Score=20.13 Aligned_cols=41 Identities=10% Similarity=-0.087 Sum_probs=25.2
Q ss_pred ChhhhhcCcCCcEEEcccccccccccccccCCCCCceEeccc
Q 040410 89 VPHSINNFARLQWYDLVFNKFSGELLASTKNLKSLEVLAINK 130 (171)
Q Consensus 89 ~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 130 (171)
-...|..+.+|+.+.+-.+ +..-....|.++.+|+.+.+..
T Consensus 12 ~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 12 DKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3446667777887777553 2212234566777787777655
Done!