Citrus Sinensis ID: 040414

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN
Secondary Structure (PSIPRED)
ccEEEccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccHccccHHHEEccccccccEEEEEcccccHHHHHcccEEEcccHEHEEEEEEEEEccccccHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHcccHcccccHHHHHHHHcccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
NNIILNSNLEAFVADFGTArllhadssnrtllagtygyiapeLAYTMVMTEKCDVYSFGVVTLEVLmgkhprdllsslssssdpkimlidvldqrlpppvdqKVIQDILLASTISFAclqsnpksrptmqyVSQEFlitrktplvkhaaiqdisisqlrn
Flexible Loop (DISEMBL)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLItrktplvkhaaiqdisisqlrn
Low Complexity Region (SEG)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDllsslssssDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN
Disordered region (IsUnstruct)
**IILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH***************IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS*******MQYVSQEFLITRKTPLVKHAAIQDI*******
Disordered Region (DISOPRED)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE*******************I*****
Disordered Region (DISEMBL)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN
Disordered Region (DISPRO)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISIS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q8VZG8	1045	Probable LRR receptor-lik	yes	no	0.837	0.128	0.529	3e-35
Q9LP24	1120	Probable leucine-rich rep	no	no	0.837	0.119	0.525	8e-35
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.818	0.118	0.428	2e-23
O49318	1124	Probable leucine-rich rep	no	no	0.825	0.117	0.407	2e-22
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.918	0.146	0.385	2e-21
C0LGF5	1072	Probable LRR receptor-lik	no	no	0.856	0.127	0.377	1e-20
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.818	0.127	0.385	3e-20
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.818	0.118	0.4	3e-20
Q9M0G7	1013	Leucine-rich repeat recep	no	no	0.812	0.128	0.407	6e-20
O49545	1003	Leucine-rich repeat recep	no	no	0.812	0.129	0.395	1e-19

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 99/136 (72%), Gaps = 2/136 (1%)

Query: 2    NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
            NI+L  + EA ++DFGTA+LL  DSSN + +AGTYGY+APELAY M +TEKCDVYSFGV+
Sbjct: 910  NILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVL 969

Query: 62   TLEVLMGKHPRDLLSSLSSS-SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
            TLEV+ G+HP DL+S+LSSS  D  + L  + D RLP P  + + +++L    ++  CL 
Sbjct: 970  TLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPE-IKEEVLEILKVALLCLH 1028

Query: 121  SNPKSRPTMQYVSQEF 136
            S+P++RPTM  +S  F
Sbjct: 1029 SDPQARPTMLSISTAF 1044

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  145 bits (367), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/135 (52%), Positives = 98/135 (72%), Gaps = 1/135 (0%)

Query: 2    NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
            NI+L+++  A ++DFGTA+LL  DSSN + +AGTYGY+APE AYTM +TEKCDVYSFGV+
Sbjct: 986  NILLDNDYTAKISDFGTAKLLKTDSSNWSAVAGTYGYVAPEFAYTMKVTEKCDVYSFGVL 1045

Query: 62   TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             LE+++GKHP DL+SSLSSS    + L  + D+R+  P  Q   + +L    ++  CLQ+
Sbjct: 1046 ILELIIGKHPGDLVSSLSSSPGEALSLRSISDERVLEPRGQNR-EKLLKMVEMALLCLQA 1104

Query: 122  NPKSRPTMQYVSQEF 136
            NP+SRPTM  +S  F
Sbjct: 1105 NPESRPTMLSISTTF 1119

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 9/140 (6%)

Query: 1    NNIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
            NNI+L+   +A V DFG A+L+  + S + + +AG+YGYIAPE AYTM +TEKCD+YSFG
Sbjct: 930  NNILLDERFQAHVGDFGLAKLIDLSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFG 989

Query: 60   VVTLEVLMGKHP-------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
            VV LE++ GK P        DL++ +  S    I  I++ D RL    D++ + ++ L  
Sbjct: 990  VVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTIEMFDARLDTN-DKRTVHEMSLVL 1048

Query: 113  TISFACLQSNPKSRPTMQYV 132
             I+  C  ++P SRPTM+ V
Sbjct: 1049 KIALFCTSNSPASRPTMREV 1068

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 84/140 (60%), Gaps = 8/140 (5%)

Query: 1    NNIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
            NNI+++ N EA V DFG A+++    S + + +AG+YGYIAPE AYTM +TEKCD+YSFG
Sbjct: 956  NNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFG 1015

Query: 60   VVTLEVLMGKHP-------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
            VV LE+L GK P        DL +   +      +  ++LD  L    D  ++  ++  +
Sbjct: 1016 VVLLELLTGKAPVQPLEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVT 1075

Query: 113  TISFACLQSNPKSRPTMQYV 132
             I+  C +S+P  RPTM+ V
Sbjct: 1076 KIAVLCTKSSPSDRPTMREV 1095

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 90/161 (55%), Gaps = 14/161 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NNI+L+SN EA VADFG A+ L    ++  +  +AG+YGYIAPE AYT+ + EK DVYSF
Sbjct: 820 NNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSF 879

Query: 59  GVVTLEVLMGKHP-------RDLLSSLSSSSDP-KIMLIDVLDQRLPPPVDQKVIQDILL 110
           GVV LE++ GK P        D++  + S +D  K  ++ V+D RL        + ++  
Sbjct: 880 GVVLLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVLKVIDLRL----SSVPVHEVTH 935

Query: 111 ASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQ 151
              ++  C++     RPTM+ V Q      K PL K  A +
Sbjct: 936 VFYVALLCVEEQAVERPTMREVVQILTEIPKIPLSKQQAAE 976

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGF5|Y1341_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 93/159 (58%), Gaps = 22/159 (13%)

Query: 1    NNIILNSNLEAFVADFGTARLL-----HADSSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
            NNI+L+S  EA +ADFG A+L+     + ++ +R  +AG+YGYIAPE  YTM +TEK DV
Sbjct: 904  NNILLDSKYEAILADFGLAKLMMNSPNYHNAMSR--VAGSYGYIAPEYGYTMNITEKSDV 961

Query: 56   YSFGVVTLEVLMGK-----------HPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV 104
            YS+GVV LE+L G+           H  + +     + +P + ++DV  Q LP   DQ +
Sbjct: 962  YSYGVVLLEILSGRSAVEPQIGDGLHIVEWVKKKMGTFEPALSVLDVKLQGLP---DQ-I 1017

Query: 105  IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
            +Q++L    I+  C+  +P  RPTM+ V    +  + +P
Sbjct: 1018 VQEMLQTLGIAMFCVNPSPVERPTMKEVVTLLMEVKCSP 1056

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 9/140 (6%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+SNLEA +ADFG A+++   +   +++AG+YGYIAPE  YT+ + EK D+YS GV
Sbjct: 858 NNILLDSNLEARIADFGLAKMMLHKNETVSMVAGSYGYIAPEYGYTLKIDEKSDIYSLGV 917

Query: 61  VTLEVLMGKHP--------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           V LE++ GK P         D++  +         L +V+D  +     + VI+++LLA 
Sbjct: 918 VLLELVTGKMPIDPSFEDSIDVVEWIRRKVKKNESLEEVIDASIAGDC-KHVIEEMLLAL 976

Query: 113 TISFACLQSNPKSRPTMQYV 132
            I+  C    PK RP+++ V
Sbjct: 977 RIALLCTAKLPKDRPSIRDV 996

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 9/140 (6%)

Query: 1    NNIILNSNLEAFVADFGTARLLHA-DSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
            NNI+L+   EA V DFG A+++    S + + +AG+YGYIAPE AYTM +TEK D+YS+G
Sbjct: 936  NNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYG 995

Query: 60   VVTLEVLMGKHP-------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
            VV LE+L GK P        D+++ + S      +   VLD RL    D++++  +L   
Sbjct: 996  VVLLELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSSGVLDARLTLE-DERIVSHMLTVL 1054

Query: 113  TISFACLQSNPKSRPTMQYV 132
             I+  C   +P +RP+M+ V
Sbjct: 1055 KIALLCTSVSPVARPSMRQV 1074

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M0G7|PXL2_ARATH Leucine-rich repeat receptor-like protein kinase PXL2 OS=Arabidopsis thaliana GN=PXL2 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 83/140 (59%), Gaps = 10/140 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L++NL+A +ADFG AR++       +++AG+YGYIAPE  YT+ + EK D+YS+GV
Sbjct: 835 NNILLDANLDARIADFGLARMMARKKETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGV 894

Query: 61  VTLEVLMGKHPRDLLSSLSSSSD------PKIMLIDVLDQRLPPPVD--QKVIQDILLAS 112
           V LE+L G+ P  L      S D       KI     L++ L P V   + V +++LL  
Sbjct: 895 VLLELLTGRRP--LEPEFGESVDIVEWVRRKIRDNISLEEALDPNVGNCRYVQEEMLLVL 952

Query: 113 TISFACLQSNPKSRPTMQYV 132
            I+  C    PK RP+M+ V
Sbjct: 953 QIALLCTTKLPKDRPSMRDV 972

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 83/144 (57%), Gaps = 14/144 (9%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NNI+L+SN EA VADFG A+ L    ++  +  +AG+YGYIAPE AYT+ + EK DVYSF
Sbjct: 824 NNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSF 883

Query: 59  GVVTLEVLMGKHP-------RDLLSSLSSSSDP-KIMLIDVLDQRLPPPVDQKVIQDILL 110
           GVV LE++ G+ P        D++  +   +D  K  ++ VLD RL        I ++  
Sbjct: 884 GVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKDSVLKVLDPRL----SSIPIHEVTH 939

Query: 111 ASTISFACLQSNPKSRPTMQYVSQ 134
              ++  C++     RPTM+ V Q
Sbjct: 940 VFYVAMLCVEEQAVERPTMREVVQ 963

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
296085307	874	unnamed protein product [Vitis vinifera]	0.962	0.176	0.601	2e-49
359484068	868	PREDICTED: probable leucine-rich repeat	0.962	0.177	0.601	2e-49
296085297	175	unnamed protein product [Vitis vinifera]	0.856	0.782	0.664	2e-49
359484063	1003	PREDICTED: probable LRR receptor-like se	0.85	0.135	0.669	5e-49
225465647	820	PREDICTED: probable LRR receptor-like se	0.968	0.189	0.597	5e-49
296085298	610	unnamed protein product [Vitis vinifera]	0.968	0.254	0.597	5e-49
359484066	843	PREDICTED: probable LRR receptor-like se	0.962	0.182	0.601	1e-48
296085303	789	unnamed protein product [Vitis vinifera]	0.962	0.195	0.601	2e-48
224108669	811	predicted protein [Populus trichocarpa]	0.937	0.184	0.603	5e-47
297738138	577	unnamed protein product [Vitis vinifera]	0.968	0.268	0.578	1e-46

>gi|296085307|emb|CBI29039.3| unnamed protein product [Vitis vinifera]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 124/158 (78%), Gaps = 4/158 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+  L+AF++DFGTARLLH DSSN+TLLAGTYGYIAPELAYTM +TEKCDVYSFGV
Sbjct: 716 NNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKCDVYSFGV 775

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MG+HPR+L + LSSSS   IML D+LD RLP P D++V +D++L   ++  C+ 
Sbjct: 776 VALETMMGRHPRELFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVWLALKCIH 835

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQL 158
           SNP+SRPTMQ++S + LI  ++P ++      IS+ QL
Sbjct: 836 SNPRSRPTMQHISSKLLI--QSPFLE--PFHGISLWQL 869

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484068|ref|XP_002271708.2| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Vitis vinifera]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 124/158 (78%), Gaps = 4/158 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+  L+AF++DFGTARLLH DSSN+TLLAGTYGYIAPELAYTM +TEKCDVYSFGV
Sbjct: 710 NNILLDFKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMAVTEKCDVYSFGV 769

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MG+HPR+L + LSSSS   IML D+LD RLP P D++V +D++L   ++  C+ 
Sbjct: 770 VALETMMGRHPRELFTLLSSSSAQNIMLTDILDSRLPSPQDRQVARDVVLVVWLALKCIH 829

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQL 158
           SNP+SRPTMQ++S + LI  ++P ++      IS+ QL
Sbjct: 830 SNPRSRPTMQHISSKLLI--QSPFLE--PFHGISLWQL 863

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085297|emb|CBI29029.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/137 (66%), Positives = 113/137 (82%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L+S L+AF++DFGTARLLH DSSN+T+LAGTYGYIAPELAYTMV+TEKCDVYSFGV
Sbjct: 17  SNILLDSKLDAFLSDFGTARLLHHDSSNQTVLAGTYGYIAPELAYTMVVTEKCDVYSFGV 76

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MGKHPR+L + LSSSS   IML D+LD RLP P DQ+V +D++L   ++  C+ 
Sbjct: 77  VALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPSPQDQQVARDVVLVVWLALKCIH 136

Query: 121 SNPKSRPTMQYVSQEFL 137
           SNP+SRPTMQ +S   L
Sbjct: 137 SNPRSRPTMQLISSRLL 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484063|ref|XP_002270651.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/136 (66%), Positives = 112/136 (82%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+S L+AF++DFGTARLLH DSSN+T+LAGTYGYIAPELAYTMV+TEKCDVYSFGVV
Sbjct: 846 NILLDSKLDAFLSDFGTARLLHHDSSNQTVLAGTYGYIAPELAYTMVVTEKCDVYSFGVV 905

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            LE +MGKHPR+L + LSSSS   IML D+LD RLP P DQ+V +D++L   ++  C+ S
Sbjct: 906 ALETMMGKHPRELFTLLSSSSAQSIMLTDILDSRLPSPQDQQVARDVVLVVWLALKCIHS 965

Query: 122 NPKSRPTMQYVSQEFL 137
           NP+SRPTMQ +S   L
Sbjct: 966 NPRSRPTMQLISSRLL 981

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465647|ref|XP_002270862.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 123/159 (77%), Gaps = 4/159 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+S L+AF++DFGT+RLLH DSSN+TLL+GTYGYIAPELAYTMV+TEKCDVYSFGV
Sbjct: 662 NNILLDSKLDAFLSDFGTSRLLHPDSSNQTLLSGTYGYIAPELAYTMVVTEKCDVYSFGV 721

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MGKHP +L + LSSSS   IML D+LD RLP P DQ+V +D++L   ++  C+ 
Sbjct: 722 VALETMMGKHPGELFTLLSSSSTQNIMLTDMLDSRLPSPQDQQVARDVVLVVWLALKCIH 781

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLR 159
           SNP+SRPTMQ++S + L   ++P +       IS+ QL 
Sbjct: 782 SNPRSRPTMQHISSKLL--TQSPFL--GPFHGISLWQLN 816

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085298|emb|CBI29030.3| unnamed protein product [Vitis vinifera]

 Score =  198 bits (504), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 123/159 (77%), Gaps = 4/159 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+S L+AF++DFGT+RLLH DSSN+TLL+GTYGYIAPELAYTMV+TEKCDVYSFGV
Sbjct: 452 NNILLDSKLDAFLSDFGTSRLLHPDSSNQTLLSGTYGYIAPELAYTMVVTEKCDVYSFGV 511

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MGKHP +L + LSSSS   IML D+LD RLP P DQ+V +D++L   ++  C+ 
Sbjct: 512 VALETMMGKHPGELFTLLSSSSTQNIMLTDMLDSRLPSPQDQQVARDVVLVVWLALKCIH 571

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLR 159
           SNP+SRPTMQ++S + L   ++P +       IS+ QL 
Sbjct: 572 SNPRSRPTMQHISSKLL--TQSPFL--GPFHGISLWQLN 606

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484066|ref|XP_002271307.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 122/158 (77%), Gaps = 4/158 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+S L+AF++DFGTARLLH DSSN+TLLAGTYGYIAPELAYTMV+TEKCDVYSFGV
Sbjct: 685 NNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMVVTEKCDVYSFGV 744

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MGKHP +L + LSSSS   IML ++LD RLP P DQ+V +D++L   ++  C+ 
Sbjct: 745 VALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQQVARDVVLVVWLALKCIH 804

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQL 158
           SNP+SRPTMQ++  + L   ++P +       IS+ QL
Sbjct: 805 SNPRSRPTMQHILSKLL--TQSPFL--GPFNWISLCQL 838

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085303|emb|CBI29035.3| unnamed protein product [Vitis vinifera]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/158 (60%), Positives = 122/158 (77%), Gaps = 4/158 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L+S L+AF++DFGTARLLH DSSN+TLLAGTYGYIAPELAYTMV+TEKCDVYSFGV
Sbjct: 631 NNILLDSKLDAFLSDFGTARLLHPDSSNQTLLAGTYGYIAPELAYTMVVTEKCDVYSFGV 690

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           V LE +MGKHP +L + LSSSS   IML ++LD RLP P DQ+V +D++L   ++  C+ 
Sbjct: 691 VALETMMGKHPGELFTLLSSSSTQNIMLTNILDSRLPSPQDQQVARDVVLVVWLALKCIH 750

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQL 158
           SNP+SRPTMQ++  + L   ++P +       IS+ QL
Sbjct: 751 SNPRSRPTMQHILSKLL--TQSPFL--GPFNWISLCQL 784

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108669|ref|XP_002333361.1| predicted protein [Populus trichocarpa] gi|222836312|gb|EEE74733.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 96/159 (60%), Positives = 122/159 (76%), Gaps = 9/159 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++LNS  ++FVADFG ARLL  DSSN T+LAGTYGYIAPELAYTMV+TEKCDVYSFGVV
Sbjct: 648 NVLLNSESKSFVADFGVARLLDPDSSNHTVLAGTYGYIAPELAYTMVVTEKCDVYSFGVV 707

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            LE LMGKHP D+L    SSS   + L +VLD RLPPP ++ VIQ+I + ++++F+CL S
Sbjct: 708 ALETLMGKHPGDIL----SSSARAMTLKEVLDPRLPPPTNEIVIQNICIIASLAFSCLHS 763

Query: 122 NPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
           NPKSRP+M++VSQEFL  ++          +IS+ +LRN
Sbjct: 764 NPKSRPSMKFVSQEFLSPKRL-----LGGLEISLLELRN 797

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738138|emb|CBI27339.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 121/159 (76%), Gaps = 4/159 (2%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+S   A V+DFGTARLL  DSSN+TLLAGTYGY+APELAYTMV+TEKCDVYSFGV+
Sbjct: 420 NILLDSEFRAVVSDFGTARLLDPDSSNQTLLAGTYGYVAPELAYTMVVTEKCDVYSFGVL 479

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
           TLE++MGKHPR+L++ LS+SS   IML+D+LD RL P +D +VI +++L   ++  C+  
Sbjct: 480 TLEIMMGKHPRELVTILSTSSSQNIMLVDILDPRLAPHIDPEVIDNVVLIIRLALKCINL 539

Query: 122 NPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
           NP SRPTMQ+V +EF      P+  HA    IS+ Q ++
Sbjct: 540 NPTSRPTMQHVCKEFETCTPFPIPFHA----ISLGQSKD 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.837	0.128	0.485	4.1e-29
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.837	0.119	0.474	8.9e-28
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.825	0.117	0.4	1.3e-20
TAIR|locus:2020417	1101	AT1G17230 [Arabidopsis thalian	0.818	0.118	0.414	1.6e-20
TAIR|locus:2168907	966	XIP1 "XYLEM INTERMIXED WITH PH	0.85	0.140	0.414	8.6e-19
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.937	0.149	0.381	9e-19
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.812	0.114	0.414	1.1e-18
TAIR|locus:2025545	1029	AT1G08590 [Arabidopsis thalian	0.825	0.128	0.395	2.5e-18
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.818	0.118	0.392	4.5e-18
TAIR|locus:2139885	1013	AT4G28650 [Arabidopsis thalian	0.825	0.130	0.391	5.1e-18

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 4.1e-29, P = 4.1e-29
 Identities = 66/136 (48%), Positives = 91/136 (66%)

Query:     2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
             NI+L  + EA ++DFGTA+LL  DSSN + +AGTYGY+APELAY M +TEKCDVYSFGV+
Sbjct:   910 NILLGEDYEAKISDFGTAKLLKPDSSNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVL 969

Query:    62 TLEVLMGKHPRDXXXXXXXXX-DPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
             TLEV+ G+HP D          D  + L  + D RLP P  + + +++L    ++  CL 
Sbjct:   970 TLEVIKGEHPGDLVSTLSSSPPDATLSLKSISDHRLPEPTPE-IKEEVLEILKVALLCLH 1028

Query:   121 SNPKSRPTMQYVSQEF 136
             S+P++RPTM  +S  F
Sbjct:  1029 SDPQARPTMLSISTAF 1044

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 8.9e-28, P = 8.9e-28
 Identities = 64/135 (47%), Positives = 90/135 (66%)

Query:     2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
             NI+L+++  A ++DFGTA+LL  DSSN + +AGTYGY+APE AYTM +TEKCDVYSFGV+
Sbjct:   986 NILLDNDYTAKISDFGTAKLLKTDSSNWSAVAGTYGYVAPEFAYTMKVTEKCDVYSFGVL 1045

Query:    62 TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
              LE+++GKHP D            + L  + D+R+  P  Q   + +L    ++  CLQ+
Sbjct:  1046 ILELIIGKHPGDLVSSLSSSPGEALSLRSISDERVLEPRGQNR-EKLLKMVEMALLCLQA 1104

Query:   122 NPKSRPTMQYVSQEF 136
             NP+SRPTM  +S  F
Sbjct:  1105 NPESRPTMLSISTTF 1119

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 56/140 (40%), Positives = 81/140 (57%)

Query:     1 NNIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
             NNI+++ N EA V DFG A+++    S + + +AG+YGYIAPE AYTM +TEKCD+YSFG
Sbjct:   956 NNILIDENFEAHVGDFGLAKVIDMPLSKSVSAVAGSYGYIAPEYAYTMKVTEKCDIYSFG 1015

Query:    60 VVTLEVLMGKHP-------RDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
             VV LE+L GK P        D             +  ++LD  L    D  ++  ++  +
Sbjct:  1016 VVLLELLTGKAPVQPLEQGGDLATWTRNHIRDHSLTSEILDPYLTKVEDDVILNHMITVT 1075

Query:   113 TISFACLQSNPKSRPTMQYV 132
              I+  C +S+P  RPTM+ V
Sbjct:  1076 KIAVLCTKSSPSDRPTMREV 1095

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

TAIR|locus:2020417 AT1G17230 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 58/140 (41%), Positives = 82/140 (58%)

Query:     1 NNIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
             NNI+L+   +A V DFG A+L+    S + + +AG+YGYIAPE AYTM +TEKCD+YSFG
Sbjct:   930 NNILLDERFQAHVGDFGLAKLIDLSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFG 989

Query:    60 VVTLEVLMGKHP-------RDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
             VV LE++ GK P        D            I  I++ D RL    D++ + ++ L  
Sbjct:   990 VVLLELITGKPPVQPLEQGGDLVNWVRRSIRNMIPTIEMFDARLDTN-DKRTVHEMSLVL 1048

Query:   113 TISFACLQSNPKSRPTMQYV 132
              I+  C  ++P SRPTM+ V
Sbjct:  1049 KIALFCTSNSPASRPTMREV 1068

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2168907 XIP1 "XYLEM INTERMIXED WITH PHLOEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 8.6e-19, P = 8.6e-19
 Identities = 63/152 (41%), Positives = 82/152 (53%)

Query:     2 NIILNSNLEAFVADFGTARLLHA--DSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
             NI+L+ N +  VADFG A++L A    S  T++AGTYGY+APE AY+   T KCDVYSFG
Sbjct:   793 NILLDVNYQPKVADFGIAKVLQARGKDSTTTVMAGTYGYLAPEYAYSSKATIKCDVYSFG 852

Query:    60 VVTLEVLMGKHPRDXXXXX--------XXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLA 111
             VV +E++ GK P D                 D K  LI+ LD+RL      K   D++ A
Sbjct:   853 VVLMELITGKKPVDSCFGENKNIVNWVSTKIDTKEGLIETLDKRLSE--SSKA--DMINA 908

Query:   112 STISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
               ++  C    P  RPTM  V Q  L+   TP
Sbjct:   909 LRVAIRCTSRTPTIRPTMNEVVQ--LLIDATP 938

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010051 "xylem and phloem pattern formation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 63/165 (38%), Positives = 88/165 (53%)

Query:     1 NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSF 58
             NNI+L+SN EA VADFG A+ L    ++  +  +AG+YGYIAPE AYT+ + EK DVYSF
Sbjct:   820 NNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSF 879

Query:    59 GVVTLEVLMGKHPR-------DXXXXXXXXXDP-KIMLIDVLDQRLPPPVDQKVIQDILL 110
             GVV LE++ GK P        D         D  K  ++ V+D RL        + ++  
Sbjct:   880 GVVLLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVLKVIDLRL----SSVPVHEVTH 935

Query:   111 ASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH-AAIQDIS 154
                ++  C++     RPTM+ V Q      K PL K  AA  D++
Sbjct:   936 VFYVALLCVEEQAVERPTMREVVQILTEIPKIPLSKQQAAESDVT 980

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 58/140 (41%), Positives = 83/140 (59%)

Query:     1 NNIILNSNLEAFVADFGTARLLH----ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVY 56
             NNI++  + E ++ DFG A+L+     A SSN   +AG+YGYIAPE  Y+M +TEK DVY
Sbjct:   924 NNILIGPDFEPYIGDFGLAKLVDDGDFARSSNT--IAGSYGYIAPEYGYSMKITEKSDVY 981

Query:    57 SFGVVTLEVLMGKHPRDXXX-XXXXXXD--PKIMLIDVLDQRLPPPVDQKVIQDILLAST 113
             S+GVV LEVL GK P D          D   KI  I V+DQ L    + +V ++++    
Sbjct:   982 SYGVVVLEVLTGKQPIDPTIPDGLHIVDWVKKIRDIQVIDQGLQARPESEV-EEMMQTLG 1040

Query:   114 ISFACLQSNPKSRPTMQYVS 133
             ++  C+   P+ RPTM+ V+
Sbjct:  1041 VALLCINPIPEDRPTMKDVA 1060

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2025545 AT1G08590 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 55/139 (39%), Positives = 84/139 (60%)

Query:     1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
             NNI+L+SNLEA +ADFG A+++   +   +++AG+YGYIAPE  YT+ + EK D+YS GV
Sbjct:   858 NNILLDSNLEARIADFGLAKMMLHKNETVSMVAGSYGYIAPEYGYTLKIDEKSDIYSLGV 917

Query:    61 VTLEVLMGKHPRDXXXXXXXXXDP----KIMLIDVLDQRLPPPV--DQK-VIQDILLAST 113
             V LE++ GK P D               K+   + L++ +   +  D K VI+++LLA  
Sbjct:   918 VLLELVTGKMPIDPSFEDSIDVVEWIRRKVKKNESLEEVIDASIAGDCKHVIEEMLLALR 977

Query:   114 ISFACLQSNPKSRPTMQYV 132
             I+  C    PK RP+++ V
Sbjct:   978 IALLCTAKLPKDRPSIRDV 996

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 55/140 (39%), Positives = 79/140 (56%)

Query:     1 NNIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
             NNI+L+   EA V DFG A+++    S + + +AG+YGYIAPE AYTM +TEK D+YS+G
Sbjct:   936 NNILLDDKFEAHVGDFGLAKVIDMPHSKSMSAIAGSYGYIAPEYAYTMKVTEKSDIYSYG 995

Query:    60 VVTLEVLMGKHP-------RDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
             VV LE+L GK P        D             +   VLD RL    D++++  +L   
Sbjct:   996 VVLLELLTGKAPVQPIDQGGDVVNWVRSYIRRDALSSGVLDARLTLE-DERIVSHMLTVL 1054

Query:   113 TISFACLQSNPKSRPTMQYV 132
              I+  C   +P +RP+M+ V
Sbjct:  1055 KIALLCTSVSPVARPSMRQV 1074

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2139885 AT4G28650 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 54/138 (39%), Positives = 81/138 (58%)

Query:     1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
             NNI+L++NL+A +ADFG AR++       +++AG+YGYIAPE  YT+ + EK D+YS+GV
Sbjct:   835 NNILLDANLDARIADFGLARMMARKKETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGV 894

Query:    61 VTLEVLMGKHPRDXXXXXXXXXDP----KIMLIDVLDQRLPPPVDQ-KVIQD-ILLASTI 114
             V LE+L G+ P +               KI     L++ L P V   + +Q+ +LL   I
Sbjct:   895 VLLELLTGRRPLEPEFGESVDIVEWVRRKIRDNISLEEALDPNVGNCRYVQEEMLLVLQI 954

Query:   115 SFACLQSNPKSRPTMQYV 132
             +  C    PK RP+M+ V
Sbjct:   955 ALLCTTKLPKDRPSMRDV 972

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010067 "procambium histogenesis" evidence=ISS

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00031867001 SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (631 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-16
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	8e-16
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	1e-13
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	2e-13
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	3e-12
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-12
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	4e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-12
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	2e-11
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-11
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-11
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-10
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-10
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-10
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	1e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	2e-09
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	6e-09
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	8e-09
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	8e-09
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	2e-08
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	4e-08
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	4e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	5e-08
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	5e-08
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	7e-08
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	1e-07
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-07
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	1e-07
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	1e-07
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-07
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	3e-07
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	5e-07
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	5e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	6e-07
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	6e-07
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-06
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	2e-06
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	2e-06
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	2e-06
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	3e-06
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	3e-06
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	4e-06
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	6e-06
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-06
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	8e-06
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	8e-06
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	8e-06
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	1e-05
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	1e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-05
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	2e-05
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	2e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-05
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-05
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	2e-05
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	2e-05
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	2e-05
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	3e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	3e-05
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	4e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-05
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	4e-05
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	4e-05
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	4e-05
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	5e-05
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	6e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	6e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	7e-05
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	7e-05
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	9e-05
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	1e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	1e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-04
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	1e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	1e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	1e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	1e-04
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-04
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	1e-04
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	2e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	3e-04
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	3e-04
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	3e-04
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-04
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-04
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	4e-04
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	4e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	4e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	4e-04
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	5e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	5e-04
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	5e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	5e-04
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	6e-04
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	6e-04
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	6e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	6e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	7e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	7e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	7e-04
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	8e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	9e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	9e-04
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	0.001
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	0.001
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.001
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	0.001
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	0.001
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	0.001
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	0.001
cd05104	375	cd05104, PTKc_Kit, Catalytic domain of the Protein	0.001
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	0.001
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	0.002
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	0.002
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	0.002
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	0.002
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	0.002
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	0.002
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	0.002
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	0.002
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.002
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.002
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.003
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	0.003
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	0.003
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.003
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	0.004
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.004
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	0.004
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	0.004
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.004
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.004

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 14/138 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE--LAYTMVMTEKCDVYSFG 59
           NI+L+ N    +ADFG A+ L   SS+ T   GT  Y+APE  L        K DV+S G
Sbjct: 128 NILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGY-GPKVDVWSLG 186

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST-ISFA- 117
           V+  E+L GK P         S +  +  + ++ + L PP++    +    +        
Sbjct: 187 VILYELLTGKPP--------FSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAKDLIK 238

Query: 118 -CLQSNPKSRPTMQYVSQ 134
            CL  +P  RPT + + Q
Sbjct: 239 KCLNKDPSKRPTAEEILQ 256

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 71.8 bits (177), Expect = 8e-16
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 9/127 (7%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+ +    +ADFG AR L       T   GT  Y+APE+       +  D++S GV+
Sbjct: 127 NILLDEDGHVKLADFGLARQLD-PGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVI 185

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E+L GK P               +   +   + P P  +  I        I    L  
Sbjct: 186 LYELLTGKPP------FPGDDQLLELFKKIGKPKPPFPPPEWDISP-EAKDLIR-KLLVK 237

Query: 122 NPKSRPT 128
           +P+ R T
Sbjct: 238 DPEKRLT 244

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 69.5 bits (171), Expect = 5e-15
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+++S+    +ADFG A+ L           + GT  ++APE+          D++S G
Sbjct: 131 NILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLG 190

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISF 116
              +E+  GK P       S   +P   L  +     PP + + +    +D L       
Sbjct: 191 CTVIEMATGKPP------WSELGNPMAALYKIGSSGEPPEIPEHLSEEAKDFLR------ 238

Query: 117 ACLQSNPKSRPT 128
            CL+ +PK RPT
Sbjct: 239 KCLRRDPKKRPT 250

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 66.0 bits (162), Expect = 1e-13
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 30/146 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N ++  NL   ++DFG +R ++ D   R       G +     APE       T K DV+
Sbjct: 132 NCLVTENLVVKISDFGLSRDIYEDDYYR---KRGGGKLPIKWMAPESLKDGKFTSKSDVW 188

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILL 110
           SFGV+  E+           +L     P +   +VL+      RLP P +    + +++L
Sbjct: 189 SFGVLLWEIF----------TLGEQPYPGMSNEEVLELLEDGYRLPRPENCPDELYELML 238

Query: 111 ASTISFACLQSNPKSRPTMQYVSQEF 136
                  C   +P+ RPT   + ++ 
Sbjct: 239 ------QCWAYDPEDRPTFSELVEDL 258

Length = 258

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L++     + D G A+LL  +++    + GT  Y++PEL       EK DV++ GVV
Sbjct: 131 NLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVV 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E   GKHP D        ++ +  LI  + + + PPV Q   Q +   + +   CL  
Sbjct: 191 LYECCTGKHPFD--------ANNQGALILKIIRGVFPPVSQMYSQQL---AQLIDQCLTK 239

Query: 122 NPKSRP 127
           + + RP
Sbjct: 240 DYRQRP 245

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 23/136 (16%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
           +N+++NS  E  +ADFG +++L           GT  Y++PE     +Y+       D++
Sbjct: 129 SNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSY----AADIW 184

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKI--MLIDVLDQRLPPPVDQKVIQDILLASTI 114
           S G+  LE  +GK P            P    ++  + D   P    ++   +       
Sbjct: 185 SLGLTLLECALGKFP------FLPPGQPSFFELMQAICDGPPPSLPAEEFSPE-----FR 233

Query: 115 SF--ACLQSNPKSRPT 128
            F  ACLQ +PK RP+
Sbjct: 234 DFISACLQKDPKKRPS 249

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 61.8 bits (151), Expect = 4e-12
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 25/143 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N ++  NL   ++DFG +R L+ D   +         ++APE       T K DV+SFGV
Sbjct: 133 NCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGV 192

Query: 61  VTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLAST 113
           +  E+  +G+ P            P +   +VL+      RLP P +    +  ++L   
Sbjct: 193 LLWEIFTLGEEPY-----------PGMSNAEVLEYLKKGYRLPKPPNCPPELYKLML--- 238

Query: 114 ISFACLQSNPKSRPTMQYVSQEF 136
               C   +P+ RPT   + +  
Sbjct: 239 ---QCWAEDPEDRPTFSELVEIL 258

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 61.4 bits (150), Expect = 4e-12
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 25/143 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N ++  NL   ++DFG +R L+ D   R         ++APE       T K DV+SFGV
Sbjct: 132 NCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGV 191

Query: 61  VTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+  +G+ P            P +   +VL+      RLP PP     + D++L   
Sbjct: 192 LLWEIFTLGEQPY-----------PGMSNEEVLEYLKNGYRLPQPPNCPPELYDLML--- 237

Query: 114 ISFACLQSNPKSRPTMQYVSQEF 136
               C   +P+ RPT   + +  
Sbjct: 238 ---QCWAEDPEDRPTFSELVEIL 257

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 22/134 (16%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+L S+ E  + DFG +  L +D+  R  + GT  ++APE+        K D++S G+
Sbjct: 127 ANILLTSDGEVKLIDFGLSAQL-SDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGI 185

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ------KVIQDILLASTI 114
             +E+  GK P          S+   M          PP  +         +D L     
Sbjct: 186 TAIELAEGKPPY---------SELPPMKALFKIATNGPPGLRNPEKWSDEFKDFLK---- 232

Query: 115 SFACLQSNPKSRPT 128
              CLQ NP+ RPT
Sbjct: 233 --KCLQKNPEKRPT 244

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 23/135 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  D+S+ T  +   G I     APE       T   DV+
Sbjct: 136 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVW 195

Query: 57  SFGVVTLEVL-MGKHPR-DLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLAS 112
           S+G+V  EV+  G+ P  D+     S+ D    +I+ ++Q  RLPPP+D       L+  
Sbjct: 196 SYGIVMWEVMSYGERPYWDM-----SNQD----VINAIEQDYRLPPPMDCPTALHQLM-- 244

Query: 113 TISFACLQSNPKSRP 127
                C Q +  +RP
Sbjct: 245 ---LDCWQKDRNARP 256

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 31/159 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+   +  +ADFG +  L +  S R    GT  ++APE+       EK D++S G+ 
Sbjct: 128 NILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGIT 187

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTIS-----F 116
            +E+  G+ P   LS L     P  M +  L  +  PP         L  +  S     F
Sbjct: 188 AIELAKGEPP---LSDL----HP--MRVLFLIPKNNPPS--------LEGNKFSKPFKDF 230

Query: 117 --ACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDI 153
              CL  +PK RP+    ++E L   K   +K A     
Sbjct: 231 VSLCLNKDPKERPS----AKELL---KHKFIKKAKKTSY 262

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 2   NIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFG 59
           NI+L+S N +  +ADFG ++LL +D S    + GT  Y+APE L      +EK D++S G
Sbjct: 122 NILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLG 181

Query: 60  VVTLE 64
           V+  E
Sbjct: 182 VILYE 186

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 57.9 bits (141), Expect = 1e-10
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 19/142 (13%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
            NI L SN    + DFG +++L +       + GT  Y++PEL     Y      K D++
Sbjct: 132 QNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYN----YKSDIW 187

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF 116
           S G V  E+   KHP +         +  + L   + +   PP+  +   ++     +  
Sbjct: 188 SLGCVLYELCTLKHPFE--------GENLLELALKILKGQYPPIPSQYSSEL---RNLVS 236

Query: 117 ACLQSNPKSRPTMQYVSQEFLI 138
           + LQ +P+ RP++  + Q   I
Sbjct: 237 SLLQKDPEERPSIAQILQSPFI 258

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  +  + DFG +  L  +S  +T   GT  Y+APE       + K D++S G+
Sbjct: 130 SNILVNSRGQIKLCDFGVSGQL-VNSLAKTF-VGTSSYMAPERIQGNDYSVKSDIWSLGL 187

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISF-- 116
             +E+  G+ P          +DP   + ++L   +  PPP   ++           F  
Sbjct: 188 SLIELATGRFP------YPPENDPPDGIFELLQYIVNEPPP---RLPSGKFSPDFQDFVN 238

Query: 117 ACLQSNPKSRPTMQ 130
            CL  +P+ RP+ +
Sbjct: 239 LCLIKDPRERPSYK 252

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 9/130 (6%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+ +    +ADFG A  L  + S R  + GT  ++APE+        K D++S G++
Sbjct: 146 NILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIM 205

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P           +P +  + ++  +  PP+             ++  CL  
Sbjct: 206 CIEMAEGEPPY--------LREPPLRALFLITTKGIPPLKNPEKWSPEFKDFLNK-CLVK 256

Query: 122 NPKSRPTMQY 131
           +P+ RP+ + 
Sbjct: 257 DPEKRPSAEE 266

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 56.7 bits (135), Expect = 4e-10
 Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 1   NNIILNSNLEAFV-ADFGTARLLHADSSNRTLLA------GTYGYIAPELAYTMV---MT 50
            NI+L+ +       DFG A+LL    S  ++ A      GT GY+APE+   +     +
Sbjct: 130 ENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYAS 189

Query: 51  EKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSD-PKIMLIDVLDQRLPPPVDQKVIQDIL 109
              D++S G+   E+L G  P +   + S++S   KI+L         P           
Sbjct: 190 SSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTPSLASPLSPSNPELISK 249

Query: 110 LASTISFACLQSNPKSRPTM-QYVSQEFLITRKTP 143
            AS +    L  +PK+R +    +S + L   K  
Sbjct: 250 AASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKLK 284

Length = 384

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 30/140 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELA-------YTMVMTEKCD 54
           NI+L  + +  +ADFG +  L A  + R    GT  ++APE+A       Y      KCD
Sbjct: 131 NILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGY----DGKCD 186

Query: 55  VYSFGVVTLEVLMGK------HPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI 108
           +++ G+  +E+   +      HP   L  +S S+ P            PP +  K     
Sbjct: 187 IWALGITAIELAELQPPMFDLHPMRALFLISKSNFP------------PPKLKDKEKWSP 234

Query: 109 LLASTISFACLQSNPKSRPT 128
           +    I   CL  +PK RPT
Sbjct: 235 VFHDFIK-KCLTKDPKKRPT 253

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 36/149 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N ++  +L   ++DFG +R ++ D   R     T G +     APE     + T K DV+
Sbjct: 135 NCLVGEDLVVKISDFGLSRDVYDDDYYRK---KTGGKLPIRWMAPESLKDGIFTSKSDVW 191

Query: 57  SFGVVTLEVL-MGKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPP--VDQKVIQD 107
           SFGV+  E+  +G  P       ++L  L                RLP P     + + +
Sbjct: 192 SFGVLLWEIFTLGATPYPGLSNEEVLEYLRK------------GYRLPKPEYCPDE-LYE 238

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           ++L      +C Q +P+ RPT   + +  
Sbjct: 239 LML------SCWQLDPEDRPTFSELVERL 261

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 54.3 bits (130), Expect = 2e-09
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 24/143 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 132 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 191

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLASTI 114
           +  E          L++      P ++  +VLDQ     R+P PP   + + D++     
Sbjct: 192 LLTE----------LTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMC---- 237

Query: 115 SFACLQSNPKSRPTMQYVSQEFL 137
              C +  P+ RPT +Y+ Q FL
Sbjct: 238 --QCWRKEPEERPTFEYL-QAFL 257

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 52.8 bits (127), Expect = 6e-09
 Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 19/135 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N+++  N    VADFG AR++  D    R        + APE A     + K DV+SFG+
Sbjct: 133 NVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGI 192

Query: 61  VTLE-VLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLASTISF 116
           +  E V  G+ P   +++          ++  +DQ  R+P P    K + DI+L      
Sbjct: 193 LLTEIVTYGRMPYPGMTNAE--------VLQQVDQGYRMPCPPGCPKELYDIML------ 238

Query: 117 ACLQSNPKSRPTMQY 131
            C + +P  RPT + 
Sbjct: 239 DCWKEDPDDRPTFET 253

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 52.3 bits (126), Expect = 8e-09
 Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 30/146 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           NI++  NL   +ADFG ARL+  D    T   G    I   APE A     T K DV+SF
Sbjct: 133 NILVGENLVCKIADFGLARLIEDDEY--TAREGAKFPIKWTAPEAANYGRFTIKSDVWSF 190

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G++  E++  G+ P            P +   +VL+Q     R+P P +  + + D++L 
Sbjct: 191 GILLTEIVTYGRVPY-----------PGMTNREVLEQVERGYRMPRPPNCPEELYDLML- 238

Query: 112 STISFACLQSNPKSRPTMQYVSQEFL 137
                 C   +P+ RPT +Y+ Q FL
Sbjct: 239 -----QCWDKDPEERPTFEYL-QSFL 258

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 52.5 bits (126), Expect = 8e-09
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 29/165 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++NS  +  + DFG +  L  +S   T + GT  Y++PE       T K DV+S G+ 
Sbjct: 134 NILVNSRGQIKLCDFGVSGEL-INSIADTFV-GTSTYMSPERIQGGKYTVKSDVWSLGIS 191

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-------RLP----PPVDQKVIQDILL 110
            +E+ +GK P    +      D  + ++D+L Q       RLP    P   +  +     
Sbjct: 192 IIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPPPRLPSSDFPEDLRDFVD---- 247

Query: 111 ASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISI 155
                 ACL  +P  RPT Q       +    P ++     ++ +
Sbjct: 248 ------ACLLKDPTERPTPQ------QLCAMPPFIQALRASNVDL 280

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 18/113 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+      + DF  A  +  D+   T  +GT GY+APE+      +   D +S GV 
Sbjct: 130 NILLDEQGHVHITDFNIATKVTPDT-LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVT 188

Query: 62  TLEVLMGKHPRDLLSS---------------LSSSSDPK--IMLIDVLDQRLP 97
             E L GK P    S                L  ++     I  I+ L +R P
Sbjct: 189 AYECLRGKRPYRGHSRTIRDQIRAKQETADVLYPATWSTEAIDAINKLLERDP 241

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L++N    + DFG A++L  DSS      GT  Y++PE    M   EK D++S G +
Sbjct: 140 NIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCL 199

Query: 62  TLEVLMGKHP 71
             E+     P
Sbjct: 200 IYELCALSPP 209

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 51.2 bits (122), Expect = 3e-08
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 19/145 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+   +  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 131 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGIT 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ----KVIQDILLASTISFA 117
            +E+  G+ P         +SD   M +  L  +  PP  +    K  ++ +       A
Sbjct: 191 AIELAKGEPP---------NSDLHPMRVLFLIPKNSPPTLEGQYSKPFKEFVE------A 235

Query: 118 CLQSNPKSRPTMQYVSQEFLITRKT 142
           CL  +P+ RPT + + +   ITR T
Sbjct: 236 CLNKDPRFRPTAKELLKHKFITRYT 260

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 22/136 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG--YIAPE-LAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R L    +  T   G     + APE +AY    T   DV+SF
Sbjct: 136 NILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYR-KFTSASDVWSF 194

Query: 59  GVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLASTI 114
           G+V  EV+  G+ P   +S+          +I  ++   RLPPP+D    +  ++L    
Sbjct: 195 GIVMWEVMSYGERPYWDMSNQ--------DVIKAVEDGYRLPPPMDCPSALYQLML---- 242

Query: 115 SFACLQSNPKSRPTMQ 130
              C Q +   RPT  
Sbjct: 243 --DCWQKDRNERPTFS 256

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 26/144 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++   L   +ADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 132 NILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 191

Query: 61  VTLE-VLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVDQKV-IQDILLAST 113
           +  E V  G+ P            P +   +VL+Q     R+P P D  + + +++L   
Sbjct: 192 LLTELVTKGRVPY-----------PGMNNREVLEQVERGYRMPCPQDCPISLHELML--- 237

Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 238 ---QCWKKDPEERPTFEYL-QSFL 257

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 50.3 bits (121), Expect = 5e-08
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 13/128 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+   +    +ADFG A  L+  S +   + GT  ++APE+      +   D++S G  
Sbjct: 129 NILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCT 188

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFACLQ 120
            +E+L G  P   L+ ++       +   V D   P P      ++D L+       C Q
Sbjct: 189 VIELLTGNPPYYDLNPMA------ALFRIVQDDHPPLPEGISPELKDFLM------QCFQ 236

Query: 121 SNPKSRPT 128
            +P  RPT
Sbjct: 237 KDPNLRPT 244

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 50.1 bits (119), Expect = 5e-08
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 11/139 (7%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 131 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P   L  +      K++ +  + +  PP ++    + +        ACL  
Sbjct: 191 AIELAKGEPPHSELHPM------KVLFL--IPKNNPPTLEGNYSKPL---KEFVEACLNK 239

Query: 122 NPKSRPTMQYVSQEFLITR 140
            P  RPT + + +   I R
Sbjct: 240 EPSFRPTAKELLKHKFIVR 258

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 50.0 bits (119), Expect = 7e-08
 Identities = 44/140 (31%), Positives = 62/140 (44%), Gaps = 33/140 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD------SSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI+L+ N    + DFG AR ++ D       S R  L     ++APE  +  V T + DV
Sbjct: 204 NILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLK----WMAPESIFDKVYTTQSDV 259

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRL-------PPPVDQKVIQDI 108
           +SFGV+  E+           SL +S  P + + +   QRL        P      I  I
Sbjct: 260 WSFGVLLWEIF----------SLGASPYPGVQINEEFCQRLKDGTRMRAPENATPEIYRI 309

Query: 109 LLASTISFACLQSNPKSRPT 128
           +L      AC Q +PK RPT
Sbjct: 310 ML------ACWQGDPKERPT 323

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 29/137 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHA---DSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI+L SN    + DFG +++  A   D   RT   GT  Y+APE+      ++K D++S 
Sbjct: 173 NILLCSNGLVKLGDFGFSKMYAATVSDDVGRTF-CGTPYYVAPEIWRRKPYSKKADMFSL 231

Query: 59  GVVTLEVLMGKHPRD-------LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA 111
           GV+  E+L  K P D       +  +L+   DP           LPP +  ++       
Sbjct: 232 GVLLYELLTLKRPFDGENMEEVMHKTLAGRYDP-----------LPPSISPEM------- 273

Query: 112 STISFACLQSNPKSRPT 128
             I  A L S+PK RP+
Sbjct: 274 QEIVTALLSSDPKRRPS 290

Length = 496

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 24/143 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   +ADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 132 NILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 191

Query: 61  VTLE-VLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVDQKVIQDILLASTI 114
           +  E V  G+ P            P ++  +VL+Q     R+P P  Q   + +     +
Sbjct: 192 LLTELVTKGRVPY-----------PGMVNREVLEQVERGYRMPCP--QGCPESL---HEL 235

Query: 115 SFACLQSNPKSRPTMQYVSQEFL 137
              C + +P  RPT +Y+ Q FL
Sbjct: 236 MKLCWKKDPDERPTFEYI-QSFL 257

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 21/144 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+   +  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 131 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGIT 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF----- 116
            +E+  G+ P         +SD   M +  L  +  PP    +  +     +  F     
Sbjct: 191 AIELAKGEPP---------NSDMHPMRVLFLIPKNNPPT---LTGEF----SKPFKEFID 234

Query: 117 ACLQSNPKSRPTMQYVSQEFLITR 140
           ACL  +P  RPT + + +   I +
Sbjct: 235 ACLNKDPSFRPTAKELLKHKFIVK 258

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 24/132 (18%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
            NI+L+++    + DFG A+ L ++ S      GT  Y+APE+     Y        D +
Sbjct: 122 ENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKA----VDWW 177

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTI 114
           S GV+  E+L GK P         + D K +   +L   L  P  +  +  +D++     
Sbjct: 178 SLGVLLYEMLTGKPPFY-------AEDRKEIYEKILKDPLRFPEFLSPEA-RDLIS---- 225

Query: 115 SFACLQSNPKSR 126
               LQ +P  R
Sbjct: 226 --GLLQKDPTKR 235

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 11/119 (9%)

Query: 13  VADFGTARLLHADSSNRTL----LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG 68
           +ADFG A  L A  +        L GT  ++APE+         CDV+S G V +E+   
Sbjct: 145 IADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATA 204

Query: 69  KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP 127
           K P +        S+   ++  +      P + + +   +     ++  CL+  P+ RP
Sbjct: 205 KPPWN----AEKHSNHLALIFKIASATTAPSIPEHLSPGL---RDVTLRCLELQPEDRP 256

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 48.0 bits (114), Expect = 3e-07
 Identities = 25/70 (35%), Positives = 36/70 (51%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L  N +  + DFG+ARLL +  +      GT  Y+ PE+   M    K D++S G +
Sbjct: 130 NIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCI 189

Query: 62  TLEVLMGKHP 71
             E+   KHP
Sbjct: 190 LYELCTLKHP 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 13/127 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE-KCDVYSFGV 60
           NI++ +     + DFG A LL+ +SS R+   GT  ++APE+       + K D++S G+
Sbjct: 131 NILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGI 190

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLI-DVLDQRLPPPVDQKVIQDILLASTISFACL 119
              E+  G  P   + +  +     +MLI      RL      K++++ +       ACL
Sbjct: 191 TIYEMATGNPPYSDVDAFRA-----MMLIPKSKPPRLEDNGYSKLLREFVA------ACL 239

Query: 120 QSNPKSR 126
              PK R
Sbjct: 240 DEEPKER 246

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 47.4 bits (113), Expect = 5e-07
 Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 28/136 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++  +L   VADFG ARL+  D   SS++ +    Y + APE A     + K DV+SF
Sbjct: 134 NILVGEDLVCKVADFGLARLIKEDVYLSSDKKI---PYKWTAPEAASHGTFSTKSDVWSF 190

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVDQKVIQDILLAS 112
           G++  E+   G+ P            P +   +V DQ     R+P P   K  Q+I    
Sbjct: 191 GILLYEMFTYGQVPY-----------PGMNNHEVYDQITAGYRMPCPA--KCPQEIY--- 234

Query: 113 TISFACLQSNPKSRPT 128
            I   C  + P+ RP+
Sbjct: 235 KIMLECWAAEPEDRPS 250

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 47.3 bits (112), Expect = 5e-07
 Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG---TYGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNLE  V+DFG +R+L  D       +G      + APE       T   DV+SF
Sbjct: 137 NILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSF 196

Query: 59  GVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD 101
           G+V  EV+  G+ P          S+ ++M       RLP P+D
Sbjct: 197 GIVMWEVMSFGERP------YWDMSNHEVMKAINDGFRLPAPMD 234

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 47.2 bits (113), Expect = 6e-07
 Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 40/158 (25%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA--------------------GTYGYIAP 41
           NI+L+ ++   + DFGTA++L  +SS  +                       GT  Y++P
Sbjct: 132 NILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSP 191

Query: 42  ELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDP----KIMLIDVLDQRLP 97
           EL       +  D+++ G +  ++L GK P         S++     KI+ ++       
Sbjct: 192 ELLNEKPAGKSSDLWALGCIIYQMLTGKPP------FRGSNEYLTFQKILKLEYSFPPNF 245

Query: 98  PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE 135
           PP  + +I+ +L+           +P+ R  +     E
Sbjct: 246 PPDAKDLIEKLLVL----------DPQDRLGVNEGYDE 273

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 19/132 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG---TYGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D        G      + APE       T   DV+S+
Sbjct: 136 NILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSY 195

Query: 59  GVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P   +S+          +I  +++  RLP P+D       L+     
Sbjct: 196 GIVMWEVMSYGERPYWEMSNQD--------VIKAIEEGYRLPAPMDCPAALHQLM----- 242

Query: 116 FACLQSNPKSRP 127
             C Q +   RP
Sbjct: 243 LDCWQKDRNERP 254

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 34/168 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++NS  E  + DFG +  L    +N     GT  Y++PE       T + D++S G+ 
Sbjct: 130 NILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYTVQSDIWSLGLS 187

Query: 62  TLEVLMGKHP-------------------------RDLLSSLSSSSDPKIMLIDVLDQRL 96
            +E+ +G++P                            +S     S   + + ++LD  +
Sbjct: 188 LVEMAIGRYPIPPPDAKELEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIV 247

Query: 97  --PPPVDQKVIQDILLASTISF--ACLQSNPKSRPTMQYVSQEFLITR 140
             PPP   K+           F   CL+ NPK R  ++ +++   I R
Sbjct: 248 NEPPP---KLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKR 292

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS------SNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI++++     ++DFG ++ L A+S        R  L G+  ++APE+      T K D+
Sbjct: 136 NILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADI 195

Query: 56  YSFGVVTLEVLMGKHP 71
           +S G + +E+L GKHP
Sbjct: 196 WSLGCLVVEMLTGKHP 211

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 2   NIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI L+ N + A + DFG AR L+          GT  Y++PE+        K D++S G 
Sbjct: 131 NIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGC 190

Query: 61  VTLEVLMGKHP 71
           V  E+   KHP
Sbjct: 191 VLYELCTLKHP 201

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 25/139 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMVMTE------ 51
           NI+L  +    +ADFG +  L          R    GT  ++APE     VM +      
Sbjct: 132 NILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPE-----VMEQVHGYDF 186

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA 111
           K D++SFG+  +E+  G  P    S        K++++ +  Q  PP ++          
Sbjct: 187 KADIWSFGITAIELATGAAP---YSKYPPM---KVLMLTL--QNDPPSLETGADYKKYSK 238

Query: 112 STISF--ACLQSNPKSRPT 128
           S       CLQ +P  RPT
Sbjct: 239 SFRKMISLCLQKDPSKRPT 257

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 46/142 (32%), Positives = 58/142 (40%), Gaps = 29/142 (20%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL-------LAGTYGYIAPELAYTMVMTEK- 52
            NI L+ N    + DFG A  L    +N T        LAGT  Y+APE+          
Sbjct: 128 ANIFLDHNGVIKLGDFGCAVKL---KNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHG 184

Query: 53  --CDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILL 110
              D++S G V LE+  GK P   L +        IM    +     PP     I D L 
Sbjct: 185 RAADIWSLGCVVLEMATGKRPWSELDNEFQ-----IMF--HVGAGHKPP-----IPDSLQ 232

Query: 111 AST--ISF--ACLQSNPKSRPT 128
            S     F   CL+S+PK RPT
Sbjct: 233 LSPEGKDFLDRCLESDPKKRPT 254

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 30/142 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK-------CD 54
           NI+L  N +  +ADFG A  + A  + R    GT  ++APE+A      EK       CD
Sbjct: 136 NILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVA----AVEKNGGYNQLCD 191

Query: 55  VYSFGVVTLEV------LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI 108
           +++ G+  +E+      +   HP   L  +S S+              PP +  K     
Sbjct: 192 IWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQ------------PPKLKDKTKWSS 239

Query: 109 LLASTISFACLQSNPKSRPTMQ 130
              + +  + L  NPK RPT +
Sbjct: 240 TFHNFVKIS-LTKNPKKRPTAE 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+ +    +ADFG  +      +  +   GT  YIAPE+   +  T   D +SFGV
Sbjct: 125 DNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGV 184

Query: 61  VTLEVLMGKHP 71
           +  E+L+G+ P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+ +    +ADFG  +         +   GT  YIAPE+       E  D +SFGV
Sbjct: 125 DNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGV 184

Query: 61  VTLEVLMGKHP 71
           +  E+L+G+ P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 33/140 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD------SSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI+L+ N    + DFG AR ++ D         R  L     ++APE  +  V T + DV
Sbjct: 203 NILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK----WMAPESIFDKVYTTQSDV 258

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRL-------PPPVDQKVIQDI 108
           +SFGV+  E+           SL +S  P + + +   +RL        P      I  I
Sbjct: 259 WSFGVLLWEIF----------SLGASPYPGVQIDEEFCRRLKEGTRMRAPEYATPEIYSI 308

Query: 109 LLASTISFACLQSNPKSRPT 128
           +L       C  +NP+ RPT
Sbjct: 309 ML------DCWHNNPEDRPT 322

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 31/134 (23%), Positives = 71/134 (52%), Gaps = 14/134 (10%)

Query: 1   NNIILNSNLEAFVADFGTARL---LHADSSNRTLLAGTYGYIAPEL--AYTMVMTEKCDV 55
           +N++++++    ++DFG ++    ++ +  N ++  G+  ++APE+  +Y+   + K D+
Sbjct: 137 DNLLVDADGICKISDFGISKKSDDIYDNDQNMSM-QGSVFWMAPEVIHSYSQGYSAKVDI 195

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL-LASTI 114
           +S G V LE+  G+ P     ++++       +  + ++R  PP+   V  ++  +A   
Sbjct: 196 WSLGCVVLEMFAGRRPWSDEEAIAA-------MFKLGNKRSAPPIPPDVSMNLSPVALDF 248

Query: 115 SFACLQSNPKSRPT 128
             AC   NP +RPT
Sbjct: 249 LNACFTINPDNRPT 262

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 14/107 (13%)

Query: 38  YIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSS---------SDPKI-M 87
           Y+APE   T  +TEK D+Y FG++ +E+L GK P D    +  S         SD  + M
Sbjct: 844 YVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDM 903

Query: 88  LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQ 134
            ID    R    V+Q  I +++    ++  C  ++P +RP    V +
Sbjct: 904 WIDPS-IRGDVSVNQNEIVEVM---NLALHCTATDPTARPCANDVLK 946

Length = 968

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 35/158 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHA--DSSNRTLLAGTYGYIAPELAYTMVMTEKCD----- 54
           N+++NS     +ADFG +R+L    D  N ++  GT  Y++PE   T +     D     
Sbjct: 198 NLLINSAKNVKIADFGVSRILAQTMDPCNSSV--GTIAYMSPERINTDLNHGAYDGYAGD 255

Query: 55  VYSFGVVTLEVLMGKHP---------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVI 105
           ++S GV  LE  +G+ P           L+ ++  S  P+            P    +  
Sbjct: 256 IWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQPPE-----------APATASREF 304

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
           +       IS  CLQ  P  R +   + Q   I R  P
Sbjct: 305 RHF-----ISC-CLQREPAKRWSAMQLLQHPFILRAQP 336

Length = 353

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 29/143 (20%)

Query: 2   NIILNSNLEAFVADFGTARL--LHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+++ +  A V+DFG AR+  +  D+S   +      + APE       + K DV+S+G
Sbjct: 130 NILVSEDGVAKVSDFGLARVGSMGVDNSKLPV-----KWTAPEALKHKKFSSKSDVWSYG 184

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVDQKVIQDILLAST 113
           V+  EV   G+ P            PK+ L +V +      R+ PP        +L+ S 
Sbjct: 185 VLLWEVFSYGRAPY-----------PKMSLKEVKECVEKGYRMEPPEGCPADVYVLMTS- 232

Query: 114 ISFACLQSNPKSRPTMQYVSQEF 136
               C ++ PK RP+   + ++ 
Sbjct: 233 ----CWETEPKKRPSFHKLREKL 251

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 24/153 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL---LAGTYGYIAPEL--AYTMVMTEKCDVY 56
           NI+ N++ +  + DFG AR+   D+           T  Y APEL  ++    T   D++
Sbjct: 133 NILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIW 192

Query: 57  SFGVVTLEVLMGK---------HPRDLLSSLSSSSDPKIM----------LIDVLDQRLP 97
           S G +  EVL GK         H  DL++ L  +  P+ +           +  + ++ P
Sbjct: 193 SIGCIFAEVLTGKPLFPGKNVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQP 252

Query: 98  PPVDQKVIQDILLASTISFACLQSNPKSRPTMQ 130
            P  QK      LA  +    L  +PK RPT +
Sbjct: 253 VPFSQKFPNADPLALRLLERLLAFDPKDRPTAE 285

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 11/133 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NNI+L  + +  + DFG A+      S  T + GT  Y  PE+       EK DV++FG 
Sbjct: 143 NNIMLGEDDKVTITDFGLAKQ-KQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGC 201

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  ++   + P    S+   S   KI+      + +  P+ + +  +  +   I+ +CL 
Sbjct: 202 ILYQMCTLQPP--FYSTNMLSLATKIV------EAVYEPLPEGMYSE-DVTDVIT-SCLT 251

Query: 121 SNPKSRPTMQYVS 133
            + ++RP +  VS
Sbjct: 252 PDAEARPDIIQVS 264

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 37/71 (52%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L+++    +ADFG  +      +      GT  YIAPE+          D +SFGV
Sbjct: 125 DNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGV 184

Query: 61  VTLEVLMGKHP 71
           +  E+L+G+ P
Sbjct: 185 LLYEMLIGQSP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTM-----VMTEKCD 54
           +N++L+ N    +ADFG+   L AD + ++ +A GT  YI+PE+   M         +CD
Sbjct: 131 DNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECD 190

Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 191 WWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFG 59
            N+++N+     +ADFG AR   +     T    T  Y APEL       +   D++S G
Sbjct: 127 ENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVG 186

Query: 60  VVTLEVLMGK 69
            +  E+L  +
Sbjct: 187 CIFAELLSRR 196

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 41/148 (27%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N++++ +L A V+DFG A+      +++   +G     + APE       + K DV+SFG
Sbjct: 132 NVLVSEDLVAKVSDFGLAK-----EASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFG 186

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RL------PPPVDQKVIQD 107
           ++  E+   G+ P            P+I L DV+       R+      PP V + +   
Sbjct: 187 ILLWEIYSFGRVPY-----------PRIPLKDVVPHVEKGYRMEAPEGCPPEVYKVMKD- 234

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQE 135
                     C + +P  RPT + + ++
Sbjct: 235 ----------CWELDPAKRPTFKQLREQ 252

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     +ADFG  +    D        GT  YIAPE+       +  D +++GV
Sbjct: 130 DNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGV 189

Query: 61  VTLEVLMGKHPRD 73
           +  E+L G+ P D
Sbjct: 190 LLYEMLAGQPPFD 202

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 42/167 (25%), Positives = 66/167 (39%), Gaps = 44/167 (26%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE---------K 52
           NI+L  + +  +ADFG +    +    R    GT  ++APE+    V  E         K
Sbjct: 133 NILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEV----VACETFKDNPYDYK 188

Query: 53  CDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ-----KVIQD 107
            D++S G+  +E+   + P   L+       P  +L+ +L    PP +DQ         D
Sbjct: 189 ADIWSLGITLIELAQMEPPHHELN-------PMRVLLKILKSE-PPTLDQPSKWSSSFND 240

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDIS 154
            L       +CL  +P  RPT               L+KH  + D S
Sbjct: 241 FLK------SCLVKDPDDRPTA------------AELLKHPFVSDQS 269

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 18/140 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT--LLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           N +LN N+   VADFG ++ ++     R   +      +IA E     V T K DV+SFG
Sbjct: 142 NCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFG 201

Query: 60  VVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISF 116
           V   E+   G+ P      + +S      + D L Q  RL  P D     D L +  +  
Sbjct: 202 VTMWEIATRGQTP---YPGVENSE-----IYDYLRQGNRLKQPPD---CLDGLYS--LMS 248

Query: 117 ACLQSNPKSRPTMQYVSQEF 136
           +C   NPK RP+ + +  E 
Sbjct: 249 SCWLLNPKDRPSFETLRCEL 268

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 22/142 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV---MTEKCDVYSF 58
           NI+L  N    +ADFG +  + A  + R    GT  ++APE+A         + CD+++ 
Sbjct: 136 NILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAV 195

Query: 59  GVVTLEV------LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           G+  +E+      +   HP   L  ++ S+              PP +  K+        
Sbjct: 196 GITAIELAELQPPMFDLHPMRALFLMTKSNFQ------------PPKLKDKMKWSNSFHH 243

Query: 113 TISFACLQSNPKSRPTMQYVSQ 134
            +  A L  NPK RPT + + Q
Sbjct: 244 FVKMA-LTKNPKKRPTAEKLLQ 264

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 27/145 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           N++L +  +A ++DFG +R L A S      A T G     + APE       + K DV+
Sbjct: 125 NVLLVNRHQAKISDFGMSRALGAGSDYYR--ATTAGRWPLKWYAPECINYGKFSSKSDVW 182

Query: 57  SFGVVTLEVL-MGKHP-RDLLSSLSSSSDPKIMLIDVLDQ--RLP-PPVDQKVIQDILLA 111
           S+GV   E    G  P  ++          +++   +L+   RLP P    + I  I+L 
Sbjct: 183 SYGVTLWEAFSYGAKPYGEM-------KGAEVI--AMLESGERLPRPEECPQEIYSIML- 232

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                +C +  P+ RPT   +   F
Sbjct: 233 -----SCWKYRPEDRPTFSELESTF 252

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEK------CD 54
           N++++      +ADFG+A  L A+   N  L  GT  YIAPE+  TM    K      CD
Sbjct: 132 NVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECD 191

Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV+  E++ G+ P
Sbjct: 192 WWSLGVIAYEMIYGRSP 208

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAY--TMVMTEKCDVYSF 58
           NI+L+SN    + DFG ++  H D   R     GT  Y+AP++         +  D +S 
Sbjct: 135 NILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSM 194

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSD--PKIMLIDVLDQRLPPPVDQKVIQDILLASTIS- 115
           GV+  E+L G  P  +    +S ++   +I+  +    +    + + +IQ +L+      
Sbjct: 195 GVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDIIQRLLMKDPKKR 254

Query: 116 FACLQS---NPKSRPTMQYVSQEFLITRKTP 143
             C  S     K  P  Q ++ + L  +K P
Sbjct: 255 LGCGPSDADEIKKHPFFQKINWDDLAAKKVP 285

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 20/148 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ S     + DFG ARLL  D        G     ++A E  +    T + DV+S+G
Sbjct: 139 NVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYG 198

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTIS 115
           V   E++  G  P D +        P   + D+L+  +RLP PP+      D+ +   + 
Sbjct: 199 VTIWELMTFGGKPYDGI--------PTREIPDLLEKGERLPQPPI---CTIDVYM---VM 244

Query: 116 FACLQSNPKSRPTMQYVSQEFLITRKTP 143
             C   +  SRP  + ++ EF    + P
Sbjct: 245 VKCWMIDADSRPKFKELAAEFSRMARDP 272

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 203

Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 204 MAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 31/146 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY      K DV++
Sbjct: 134 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNKFSI-KSDVWA 190

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDV---LDQ--RL--PPPVDQKVIQDILL 110
           FGV+  E+          ++   S  P I L  V   L++  R+  P     KV + +  
Sbjct: 191 FGVLLWEI----------ATYGMSPYPGIDLSQVYELLEKGYRMERPEGCPPKVYELMR- 239

Query: 111 ASTISFACLQSNPKSRPTMQYVSQEF 136
                 AC Q NP  RP+   + Q F
Sbjct: 240 ------ACWQWNPSDRPSFAEIHQAF 259

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
            N++L+SN    + DFG A+ L   S  +T    GT  Y+APE+          D +S G
Sbjct: 122 ENLLLDSNGYVKLVDFGFAKKLK--SGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLG 179

Query: 60  VVTLEVLMGKHP 71
           ++  E+L G+ P
Sbjct: 180 ILLYELLTGRPP 191

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     +ADFG  +    D        GT  YIAPE+       +  D ++FGV
Sbjct: 130 DNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGV 189

Query: 61  VTLEVLMGKHPRD 73
           +  E+L G+ P +
Sbjct: 190 LLYEMLAGQAPFE 202

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTM-----VMTEKCD 54
           +N++L+ N    +ADFG+   ++ D + ++ +A GT  YI+PE+   M         +CD
Sbjct: 131 DNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECD 190

Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 191 WWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204

Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 205 MAIEMIEGEPP 215

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 41.7 bits (98), Expect = 5e-05
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 1   NNIILNSNLEAFVADFGTARL-LHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           +N++L++     +ADFG  +  +    + RT   GT  YIAPE+       +  D ++FG
Sbjct: 130 DNVMLDAEGHIKIADFGMCKENIFGGKTTRTF-CGTPDYIAPEIIAYQPYGKSVDWWAFG 188

Query: 60  VVTLEVLMGKHPRD 73
           V+  E+L G+ P D
Sbjct: 189 VLLYEMLAGQPPFD 202

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMV-----MTEKCD 54
           +NI+++ N    +ADFG+   L  D + ++ +A GT  YI+PE+   M         +CD
Sbjct: 131 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECD 190

Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 191 WWSLGVCMYEMLYGETP 207

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 22/134 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG--TYGYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     R    G     ++APE  +  V T + DV+SFG
Sbjct: 162 NVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 221

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKI---MLIDVLDQ--RLPPPVDQKVIQDILLASTI 114
           V+  E+           +L  S  P I    L  +L +  R+  P  Q   Q++     +
Sbjct: 222 VLLWEIF----------TLGGSPYPGIPVEELFKLLKEGYRMEKP--QNCTQELY---HL 266

Query: 115 SFACLQSNPKSRPT 128
              C    P  RPT
Sbjct: 267 MRDCWHEVPSQRPT 280

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 41.4 bits (97), Expect = 7e-05
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 23/138 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           NI+++  L   +ADFG ARL+  + +  T   G      + APE       T K DV+SF
Sbjct: 132 NILVSETLCCKIADFGLARLI--EDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSF 189

Query: 59  GVVTLE-VLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLASTI 114
           G++  E V  G+ P          ++P++  I  L++  R+P P +  + + +++     
Sbjct: 190 GILLTEIVTYGRIP------YPGMTNPEV--IQNLERGYRMPRPDNCPEELYELMR---- 237

Query: 115 SFACLQSNPKSRPTMQYV 132
              C +  P+ RPT +Y+
Sbjct: 238 --LCWKEKPEERPTFEYL 253

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 26/137 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL--------AYTMVMTEKC 53
           N+++N N +  + DFG +  L  DS  +T+ AG   Y+APE          Y +    K 
Sbjct: 134 NVLINRNGQVKLCDFGISGYL-VDSVAKTIDAGCKPYMAPERINPELNQKGYDV----KS 188

Query: 54  DVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST 113
           DV+S G+  +E+  G+ P D      S   P   L  V+++  P P   ++  +      
Sbjct: 189 DVWSLGITMIELATGRFPYD------SWKTPFQQLKQVVEE--PSP---QLPAEKFSPEF 237

Query: 114 ISFA--CLQSNPKSRPT 128
             F   CL+ N K RP 
Sbjct: 238 QDFVNKCLKKNYKERPN 254

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 9e-05
 Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 26/141 (18%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL-----AYTMVMTEKCDV 55
            NI+L  N E  + DFG +  L +    R    GT  ++APE+             + DV
Sbjct: 142 QNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDV 201

Query: 56  YSFGVVTLEVLMGK------HPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL 109
           +S G+  +E+  GK      HP   L  +  +  P +           P    K   D  
Sbjct: 202 WSLGITAIELADGKPPLCDMHPMRALFKIPRNPPPTLK---------SPENWSKKFNDF- 251

Query: 110 LASTISFACLQSNPKSRPTMQ 130
               IS  CL  N + RP M+
Sbjct: 252 ----IS-ECLIKNYEQRPFME 267

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 19/71 (26%), Positives = 39/71 (54%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 144 DNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 203

Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 204 MAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 18/105 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE----LAYTMVMTEKCDVYS 57
           NI+L    +  + DFG +      +S      GT  Y+APE      Y++      DV+S
Sbjct: 135 NILLTRKGQVKLCDFGVSG--ELVNSLAGTFTGTSFYMAPERIQGKPYSI----TSDVWS 188

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPV 100
            G+  LEV   + P           +P +  I++L     +P P 
Sbjct: 189 LGLTLLEVAQNRFP------FPPEGEPPLGPIELLSYIVNMPNPE 227

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 13/133 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L +N    + D G +++L  + +   +  GT  Y+APE+      + K D++S G +
Sbjct: 133 NILLVANDLVKIGDLGISKVLKKNMAKTQI--GTPHYMAPEVWKGRPYSYKSDIWSLGCL 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E+     P +      S  D +  +       +PP   Q +   I        + LQ 
Sbjct: 191 LYEMATFAPPFE----ARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIR-------SMLQV 239

Query: 122 NPKSRPTMQYVSQ 134
            PK RP    +  
Sbjct: 240 KPKLRPNCDKILA 252

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 39/71 (54%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 203

Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 204 MAIEMVEGEPP 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMV--MTEKCDVYSF 58
           NI+L+S     + DFG ++   A+   R     GT  Y+APE+         +  D +S 
Sbjct: 135 NILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSL 194

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFA 117
           GV+T E+L G  P  +    +S S+   +   +L  + P P       +D +        
Sbjct: 195 GVLTFELLTGASPFTVDGEQNSQSE---ISRRILKSKPPFPKTMSAEARDFIQ------K 245

Query: 118 CLQSNPKSR 126
            L+ +PK R
Sbjct: 246 LLEKDPKKR 254

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 13/133 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++++L   +ADFG AR++  +  + R        + APE       T K DV+SFG+
Sbjct: 132 NILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGI 191

Query: 61  VTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           + +E++  G+ P   +S+      P++  I  L++    P  +   +++     I   C 
Sbjct: 192 LLMEIVTYGRIPYPGMSN------PEV--IRALERGYRMPRPENCPEELY---NIMMRCW 240

Query: 120 QSNPKSRPTMQYV 132
           ++ P+ RPT +Y+
Sbjct: 241 KNRPEERPTFEYI 253

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 35/141 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD------SSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI+L+ N    + DFG AR ++ D         R  L     ++APE  +  V T + DV
Sbjct: 209 NILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLK----WMAPETIFDRVYTIQSDV 264

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRL--------PPPVDQKVIQD 107
           +SFGV+  E+           SL +S  P + + +   +RL        P     ++ Q 
Sbjct: 265 WSFGVLLWEIF----------SLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQT 314

Query: 108 ILLASTISFACLQSNPKSRPT 128
           +L        C    P  RPT
Sbjct: 315 ML-------DCWHGEPSQRPT 328

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 17/145 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE---KCDVYSF 58
           NI+L    +  +ADFG+A +    +S      GT  ++APE+   M   +   K DV+S 
Sbjct: 155 NILLTEPGQVKLADFGSASIASPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSL 210

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G+  +E+   K P   ++++S+        +  + Q   P +      D         +C
Sbjct: 211 GITCIELAERKPPLFNMNAMSA--------LYHIAQNESPTLQSNEWSDYF--RNFVDSC 260

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTP 143
           LQ  P+ RPT + + +   + R+ P
Sbjct: 261 LQKIPQDRPTSEELLKHMFVLRERP 285

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 38/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ S     + DFG ARLL  D +      G     ++A E       T + DV+S+G
Sbjct: 139 NVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYG 198

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTIS 115
           V   E++  G  P D          P   + D+L+  +RLP PP+    +  I++     
Sbjct: 199 VTVWELMTFGAKPYD--------GIPAREIPDLLEKGERLPQPPICTIDVYMIMV----- 245

Query: 116 FACLQSNPKSRPTMQYVSQEFLITRKTP 143
             C   + + RP  + +  EF    + P
Sbjct: 246 -KCWMIDSECRPRFRELVDEFSRMARDP 272

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 36/156 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEK-CDVYSFG 59
           NI+++ +    + DFG AR L A  ++  T    T  Y APEL        K  DV++ G
Sbjct: 130 NILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIG 189

Query: 60  VVTLEVLMGK-------------HPRDLLSSLSSS------SDPK--------IMLIDVL 92
            +  E+L G+               +  L  L  S      S+P+            + L
Sbjct: 190 CIMAELLDGEPLFPGDSDIDQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESL 249

Query: 93  DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT 128
           ++R P  V    +    L      ACL+ +PK R T
Sbjct: 250 ERRYPGKVSSPALD--FLK-----ACLRMDPKERLT 278

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPEL----AYTMVMTEKCDV 55
           +N++L+ +    +ADFGT   + A+   R   A GT  YI+PE+            +CD 
Sbjct: 171 DNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW 230

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV   E+L+G  P
Sbjct: 231 WSVGVFLYEMLVGDTP 246

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 28/139 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE------KCDV 55
           N+++N N +  + DFG +  L A  +   +  G   Y+APE   +    +      + DV
Sbjct: 133 NVLVNGNGQVKLCDFGVSGNLVASLAKTNI--GCQSYMAPERIKSGGPNQNPTYTVQSDV 190

Query: 56  YSFGVVTLEVLMGKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL 109
           +S G+  LE+ +G++P       ++ + LS+       ++D     LP        QD +
Sbjct: 191 WSLGLSILEMALGRYPYPPETYANIFAQLSA-------IVDGDPPTLPSGYSDDA-QDFV 242

Query: 110 LASTISFACLQSNPKSRPT 128
                   CL   P  RPT
Sbjct: 243 A------KCLNKIPNRRPT 255

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 26/151 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ +     + DFG A+LL  D        G     ++A E     + T K DV+S+G
Sbjct: 139 NVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYG 198

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLD-----QRLP-PPVDQKVIQDILLAS 112
           V   E++  G  P +            I  +++ D     +RLP PP+    +  +L+  
Sbjct: 199 VTVWELMTFGAKPYE-----------GIPAVEIPDLLEKGERLPQPPICTIDVYMVLV-- 245

Query: 113 TISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
                C   + +SRPT + +  EF    + P
Sbjct: 246 ----KCWMIDAESRPTFKELINEFSKMARDP 272

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 145 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGI 204

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPP 98
           + +E++ G+ P          ++P +  + ++   LPP
Sbjct: 205 MVIEMVDGEPP--------YFNEPPLKAMKMIRDNLPP 234

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 15/134 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N++++ +L   +ADFG AR++  +  + R        + APE       T K DV+SFG+
Sbjct: 133 NVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGI 192

Query: 61  VTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV-IQDILLASTISFAC 118
           +  E++  GK P          S+  +M       R+P   +    + DI+        C
Sbjct: 193 LLYEIVTYGKIP------YPGMSNSDVMSALQRGYRMPRMENCPDELYDIMK------TC 240

Query: 119 LQSNPKSRPTMQYV 132
            +   + RPT  Y+
Sbjct: 241 WKEKAEERPTFDYL 254

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 37/147 (25%), Positives = 66/147 (44%), Gaps = 21/147 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSF 58
           NI+L       +ADFG+A L+   +S      GT  ++APE+   M       K DV+S 
Sbjct: 145 NILLTEPGTVKLADFGSASLVSPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWSL 200

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF-- 116
           G+  +E+   K P   ++++S+        +  + Q   P +      D       +F  
Sbjct: 201 GITCIELAERKPPLFNMNAMSA--------LYHIAQNDSPTLSSNDWSD----YFRNFVD 248

Query: 117 ACLQSNPKSRPTMQYVSQEFLITRKTP 143
           +CLQ  P+ RP+ + + +   + R+ P
Sbjct: 249 SCLQKIPQDRPSSEELLKHRFVLRERP 275

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 20/148 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ +     + DFG A+LL AD        G     ++A E     + T + DV+S+G
Sbjct: 139 NVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYG 198

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTIS 115
           V   E++  G  P D +        P   +  +L+  +RLP PP+    +  I++     
Sbjct: 199 VTVWELMTFGSKPYDGI--------PASEISSILEKGERLPQPPICTIDVYMIMV----- 245

Query: 116 FACLQSNPKSRPTMQYVSQEFLITRKTP 143
             C   +  SRP  + +  EF    + P
Sbjct: 246 -KCWMIDADSRPKFRELIIEFSKMARDP 272

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 13/132 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L       V D G AR+L       + L GT  Y++PEL        K DV++ G  
Sbjct: 132 NVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCC 191

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQ 120
             E+   KH  +       + D   ++  +++ +LPP P D        L   I+   L 
Sbjct: 192 VYEMATLKHAFN-------AKDMNSLVYRIIEGKLPPMPKD----YSPELGELIA-TMLS 239

Query: 121 SNPKSRPTMQYV 132
             P+ RP+++ +
Sbjct: 240 KRPEKRPSVKSI 251

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 23/70 (32%), Positives = 33/70 (47%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+      + DFG  +L   D        GT  Y+APEL      T+  D ++ GV+
Sbjct: 123 NILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVL 182

Query: 62  TLEVLMGKHP 71
             E+L G  P
Sbjct: 183 LYEMLTGLPP 192

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     + D+G  +         +   GT  YIAPE+          D ++ GV
Sbjct: 125 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGV 184

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-------RLPPPVDQKVIQDILLAST 113
           +  E++ G+ P D+   + SS +P     D L Q       R+P  +  K       A++
Sbjct: 185 LMFEMMAGRSPFDI---VGSSDNPDQNTEDYLFQVILEKQIRIPRSLSVK-------AAS 234

Query: 114 ISFACLQSNPKSR 126
           +  + L  +PK R
Sbjct: 235 VLKSFLNKDPKER 247

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L       + DFG +++L ++ S    + GT  Y++PEL   +    K D+++ G V
Sbjct: 131 NIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCV 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E+L  K   D       +++P  +++ ++     P V     + I L      + LQ 
Sbjct: 191 LYELLTLKRTFD-------ATNPLNLVVKIVQGNYTPVVSVYSSELISLVH----SLLQQ 239

Query: 122 NPKSRPT 128
           +P+ RPT
Sbjct: 240 DPEKRPT 246

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           N +++      V+DFG +R +  D    ++  G+     +  PE+      + K DV++F
Sbjct: 130 NCLVDDQGCVKVSDFGLSRYVLDDEYTSSV--GSKFPVRWSPPEVLLYSKFSSKSDVWAF 187

Query: 59  GVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFA 117
           GV+  EV  +GK P +      ++S+    +   L    P    +KV         I ++
Sbjct: 188 GVLMWEVYSLGKMPYERF----NNSETVEKVSQGLRLYRPHLASEKVYA-------IMYS 236

Query: 118 CLQSNPKSRPTMQ 130
           C     + RPT Q
Sbjct: 237 CWHEKAEERPTFQ 249

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG---TYGYIAPELAYTMVMTEKC----D 54
           NI++NSN +  + DFG AR +  D   +  L     T  Y APEL   ++ + +     D
Sbjct: 133 NILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPEL---LLSSSRYTKAID 189

Query: 55  VYSFGVVTLEVLMGKH 70
           ++S G +  E+L  K 
Sbjct: 190 IWSVGCIFAELLTRKP 205

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 32  LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           L GT  YIAPE+      T+ CD +S GV+  E+L+G+ P
Sbjct: 208 LVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPP 247

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 20/106 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD------SSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI+L S+    +ADFG A LL+ D      S ++T +     ++A E       T + DV
Sbjct: 139 NILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIK----WMALESILFGRYTHQSDV 194

Query: 56  YSFGVVTLEVLM-------GKHPR---DLLSSLSSSSDPKIMLIDV 91
           +S+GV   E++        G  P    DLL      + P+I  IDV
Sbjct: 195 WSYGVTVWEMMSYGAEPYAGMRPHEVPDLLEKGERLAQPQICTIDV 240

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPEL-----AYTMVMTEKCDV 55
           NI++N++    +ADFG AR     +S   T    T  Y  PEL      Y      + D+
Sbjct: 130 NILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRY----GPEVDM 185

Query: 56  YSFGVVTLEVLMGK 69
           +S G +  E+ +GK
Sbjct: 186 WSVGCILAELFLGK 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 11/131 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N+++N+  +  + DFG +  L  +S  +T + GT  Y+APE           DV+S G+
Sbjct: 124 SNMLVNTRGQVKLCDFGVSTQL-VNSIAKTYV-GTNAYMAPERISGEQYGIHSDVWSLGI 181

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISF--A 117
             +E+ +G+ P   +     S  P  +L  ++D+  P  PV Q           + F   
Sbjct: 182 SFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPVGQ------FSEKFVHFITQ 235

Query: 118 CLQSNPKSRPT 128
           C++  PK RP 
Sbjct: 236 CMRKQPKERPA 246

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 32  LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           L GT  YIAPE+      T+ CD +S GV+  E+L+G+ P
Sbjct: 208 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPP 247

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 133 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 190

Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 191 SLVELAIGRYP 201

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L++     +ADFG  +    +    T   GT  YIAPE+   +      D ++ GV
Sbjct: 125 DNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGV 184

Query: 61  VTLEVLMGKHP 71
           +  E++ G+ P
Sbjct: 185 LMYEMMAGQPP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)

Query: 1   NNIILNSNLEAFVADFGTAR--LLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           +N++L+S     +ADFG  +  +L   +++     GT  YIAPE+          D ++ 
Sbjct: 125 DNVLLDSEGHIKIADFGMCKEGILGGVTTST--FCGTPDYIAPEILSYQPYGPAVDWWAL 182

Query: 59  GVVTLEVLMGKHP 71
           GV+  E+L G+ P
Sbjct: 183 GVLLYEMLAGQSP 195

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 16/149 (10%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L S+    ++DFG    +  +   R  L GT  ++APE+   +    + D++S G+
Sbjct: 147 DSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGI 206

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           + +E++ G+ P          ++P +  +  +   LPP V     +D    S++    L 
Sbjct: 207 MVIEMIDGEPP--------YFNEPPLQAMRRIRDNLPPRV-----KDSHKVSSVLRGFLD 253

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAA 149
                 P+ +  +QE L   + P +K A 
Sbjct: 254 LMLVREPSQRATAQELL---QHPFLKLAG 279

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMVMTEKC-DVYSFG 59
           NI+L+S     + DFG ++   ++   RT    GT  Y+APE+        K  D +S G
Sbjct: 135 NILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLG 194

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPP---PVDQKVIQDIL 109
           ++  E+L G  P  L    ++ S+    ++   D   P    P  Q ++  +L
Sbjct: 195 ILIFELLTGASPFTLEGERNTQSEVSRRILK-CDPPFPSFIGPEAQDLLHKLL 246

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 32  LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           L GT  YIAPE+      T+ CD +S GV+  E+L+G+ P
Sbjct: 204 LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPP 243

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 32/139 (23%), Positives = 62/139 (44%), Gaps = 15/139 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L  +    + DFG AR+L++         GT  Y++PE+        K D+++ G V
Sbjct: 131 NIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCV 190

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI--LLASTISFACL 119
             E+   KH  +       + + K +++ ++     PPV      D+  L++        
Sbjct: 191 LYEMCTLKHAFE-------AGNMKNLVLKIIRGSY-PPVSSHYSYDLRNLVSQL-----F 237

Query: 120 QSNPKSRPTMQYVSQEFLI 138
           + NP+ RP++  + ++  I
Sbjct: 238 KRNPRDRPSVNSILEKNFI 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 19/132 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+LN   +A +ADFG +  L    + R  + GT  ++APE+   +    K D++S G+ 
Sbjct: 129 NILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGIT 188

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPP---VDQKVIQDILLASTISF-- 116
            +E+  GK P          SD   M    +    PPP     +K   +        F  
Sbjct: 189 AIEMAEGKPPY---------SDIHPMRAIFMIPNKPPPTLSDPEKWSPEF-----NDFVK 234

Query: 117 ACLQSNPKSRPT 128
            CL  +P+ RP+
Sbjct: 235 KCLVKDPEERPS 246

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL-----AYTMVMTEKCDV 55
           NNI+L +     + DFG +  L +    R    GT  ++APE+      Y      +CDV
Sbjct: 157 NNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDV 216

Query: 56  YSFGVVTLEVLMGKHP 71
           +S G+  +E+  G  P
Sbjct: 217 WSLGITAIELGDGDPP 232

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 15/129 (11%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFG 59
           +NI++N N +  + DFG AR+        T    T  Y APE+  T      + D++S G
Sbjct: 137 SNILINENCDLKICDFGLARI---QDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAG 193

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
            +  E+L GK        L    D       + D    PP    VI  I   +T+ F  +
Sbjct: 194 CIFAEMLEGK-------PLFPGKDHVNQFSIITDLLGTPP--DDVINTICSENTLRF--V 242

Query: 120 QSNPKSRPT 128
           QS PK  P 
Sbjct: 243 QSLPKREPV 251

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 38.2 bits (89), Expect = 7e-04
 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+L+      + DFG A+ L     +RT  L GT  Y+APE+  +    +  D ++ G+
Sbjct: 131 NILLDKEGHIKLTDFGFAKKLR----DRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGI 186

Query: 61  VTLEVLMGKHP 71
           +  E+L+G  P
Sbjct: 187 LIYEMLVGYPP 197

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 20  RLLHADSSNRTLLA----GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLL 75
           R       NR  LA    GT  YIAPE+       ++CD +S GV+  E+L+G  P    
Sbjct: 183 RKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPP--FC 240

Query: 76  SSLSSSSDPKIM 87
           S     +  KI+
Sbjct: 241 SDNPQETYRKII 252

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.1 bits (89), Expect = 9e-04
 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           N ++  +L   + DFG  R ++     R    G  G     ++APE     V T K DV+
Sbjct: 149 NCMVAEDLTVKIGDFGMTRDIYETDYYRK---GGKGLLPVRWMAPESLKDGVFTTKSDVW 205

Query: 57  SFGVVTLEVL-MGKHPRDLLSS---LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           SFGVV  E+  + + P   LS+   L    D   +        LP     K+  +++   
Sbjct: 206 SFGVVLWEMATLAEQPYQGLSNEEVLKFVIDGGHL-------DLPENCPDKL-LELMR-- 255

Query: 113 TISFACLQSNPKSRPT 128
                C Q NPK RPT
Sbjct: 256 ----MCWQYNPKMRPT 267

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 38.1 bits (88), Expect = 9e-04
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 167 NVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 226

Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 227 VLMWEIFTLGGSP 239

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 20/115 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMV-MTEKCDVY 56
           N+++N + E  + DFG AR L +  +      T    T  Y APEL  ++   T   D++
Sbjct: 137 NLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMW 196

Query: 57  SFGVVTLEVLMGKH--P-RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI 108
           S G +  E+L  +   P ++ +  L        +++ VL    P    ++V+  I
Sbjct: 197 SVGCIFAEMLGRRQLFPGKNYVHQLK-------LILSVLGS--PS---EEVLNRI 239

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 24/135 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N +L  ++   VADFG ++ +++    R          +IA E     V T K DV++FG
Sbjct: 143 NCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFG 202

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLD-----QRLPPPVDQKVIQDILLAST 113
           V   E+   G+ P            P +   ++ D      RL  P D     D L    
Sbjct: 203 VTMWEIATRGQTPY-----------PGVENHEIYDYLRHGNRLKQPED---CLDELYDLM 248

Query: 114 ISFACLQSNPKSRPT 128
            S  C +++PK RPT
Sbjct: 249 YS--CWRADPKDRPT 261

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 9/65 (13%)

Query: 13  VADFGTARLLH-----ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVL- 66
           +ADFG AR +H       +SN  L      ++APE  +  V T + DV+SFG++  E+  
Sbjct: 175 IADFGLARGVHDIDYYKKTSNGRL---PVKWMAPEALFDRVYTHQSDVWSFGILMWEIFT 231

Query: 67  MGKHP 71
           +G  P
Sbjct: 232 LGGSP 236

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 22/147 (14%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRT------LLAGTYGYIAPELAYTMVMTEKCD 54
           NN++L  N    + DFG AR L     + T       + GT  ++APE+        K D
Sbjct: 131 NNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSD 190

Query: 55  VYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLAST 113
           ++S G    E+  GK P        +S D    +  +   R   P +      D   A+ 
Sbjct: 191 IWSIGCTVFEMATGKPPL-------ASMDRLAAMFYIGAHRGLMPRLP-----DSFSAAA 238

Query: 114 ISF--ACLQSNPKSRPT-MQYVSQEFL 137
           I F  +CL  +   RP+ +Q +  +FL
Sbjct: 239 IDFVTSCLTRDQHERPSALQLLRHDFL 265

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 21/71 (29%), Positives = 35/71 (49%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+      +ADFG  +    +    +   GT  YIAPE+   M+     D ++ GV
Sbjct: 125 DNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGV 184

Query: 61  VTLEVLMGKHP 71
           +  E+L G  P
Sbjct: 185 LLYEMLCGHAP 195

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 15/124 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  D   R  L GT  ++APE+        + D++S G+
Sbjct: 146 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGI 205

Query: 61  VTLEVLMGK------HPRDLLSSLSSSSDPKI--------MLIDVLDQRLP-PPVDQKVI 105
           + +E++ G+       P   +  L  S  PK+        +L D L++ L   P ++   
Sbjct: 206 MVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNAHKISPVLRDFLERMLTREPQERATA 265

Query: 106 QDIL 109
           Q++L
Sbjct: 266 QELL 269

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+++    + D+G  +         +   GT  YIAPE+          D ++ GV
Sbjct: 125 DNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGV 184

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFAC 118
           +  E++ G+ P D+++     +    +   +L++  R+P  +  K       AS +    
Sbjct: 185 LMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVK-------ASHVLKGF 237

Query: 119 LQSNPKSR 126
           L  +PK R
Sbjct: 238 LNKDPKER 245

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase, Kit

 Score = 37.6 bits (87), Expect = 0.001
 Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 43/151 (28%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS-----NRTLLAGTYGYIAPELAYTMVMTEKCDVY 56
           NI+L       + DFG AR +  DS+     N  L      ++APE  +  V T + DV+
Sbjct: 244 NILLTHGRITKICDFGLARDIRNDSNYVVKGNARL---PVKWMAPESIFNCVYTFESDVW 300

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ---KVIQDILLAST 113
           S+G++  E+           SL SS  P +            PVD    K+I++     +
Sbjct: 301 SYGILLWEIF----------SLGSSPYPGM------------PVDSKFYKMIKEGYRMLS 338

Query: 114 ISFA----------CLQSNPKSRPTMQYVSQ 134
              A          C  ++P  RPT + + Q
Sbjct: 339 PECAPSEMYDIMKSCWDADPLKRPTFKQIVQ 369

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. Kit signaling is involved in major cellular functions including cell survival, proliferation, differentiation, adhesion, and chemotaxis. Mutations in Kit, which result in constitutive ligand-independent activation, are found in human cancers such as gastrointestinal stromal tumor (GIST) and testicular germ cell tumor (TGCT). The aberrant expression of Kit and/or SCF is associated with other tumor types such as systemic mastocytosis and cancers of the breast, neurons, lung, prostate, colon, and rectum. Although the structure of the human Kit catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 375

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 15/130 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG-TYGYIAPELAYTMVMTEKCDVYSFGV 60
           N +++S     V+DFG  R +  D    +  A     +  PE+      + K DV+SFGV
Sbjct: 130 NCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGV 189

Query: 61  VTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFAC 118
           +  EV   GK P          S+ +++ +     RL  P +    + +++      ++C
Sbjct: 190 LMWEVFTEGKMP------FEKKSNYEVVEMISRGFRLYRPKLASMTVYEVM------YSC 237

Query: 119 LQSNPKSRPT 128
               P+ RPT
Sbjct: 238 WHEKPEGRPT 247

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 21/134 (15%)

Query: 2   NIILNSNLEAFVADFGTA-RLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK----CDVY 56
           NI+L+++    + DFG + RL+  DS  +T  AG   Y+APE         K     DV+
Sbjct: 145 NILLDASGNVKLCDFGISGRLV--DSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVW 202

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTIS 115
           S G+  +E+  G+ P     +         +L  +L +  P  P ++    D       S
Sbjct: 203 SLGISLVELATGQFPYKNCKTEFE------VLTKILQEEPPSLPPNEGFSPDF-----CS 251

Query: 116 FA--CLQSNPKSRP 127
           F   CL  + + RP
Sbjct: 252 FVDLCLTKDHRKRP 265

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 28/145 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           N+++    +  ++DFG +R ++ + S   R+       ++A E  +  + T + DV+SFG
Sbjct: 157 NVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFG 216

Query: 60  VVTLEVLM-------GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLA 111
           V+  E++        G  P  L + L +              R+  P +  + + +++L 
Sbjct: 217 VLLWEIVTLGGNPYPGIAPERLFNLLKTG------------YRMERPENCSEEMYNLML- 263

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C +  P  RPT   +S+E 
Sbjct: 264 -----TCWKQEPDKRPTFADISKEL 283

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 20/146 (13%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL-----AYTMVMTEKCDV 55
           NNI+L +     + DFG +  L +    R    GT  ++APE+             +CDV
Sbjct: 153 NNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDV 212

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTIS 115
           +S G+  +E+  G  P   L+ L     P   L  +   R PPP    + Q  L ++  +
Sbjct: 213 WSLGITAIELGDGDPP---LADLH----PMRALFKI--PRNPPP---TLHQPELWSNEFN 260

Query: 116 ---FACLQSNPKSRPTMQYVSQEFLI 138
                CL  + + RPT+  + Q   I
Sbjct: 261 DFIRKCLTKDYEKRPTVSDLLQHVFI 286

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 5/76 (6%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTM----VMTEKCDV 55
           +N++L+ +    +ADFGT   ++ +   R   A GT  YI+PE+  +         +CD 
Sbjct: 171 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDW 230

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV   E+L+G  P
Sbjct: 231 WSVGVFLYEMLVGDTP 246

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGV 60
           N+ +N + E  + DFG AR    DS   T    T  Y APE+    M  T+  D++S G 
Sbjct: 148 NLAVNEDCELKILDFGLAR--QTDSE-MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGC 204

Query: 61  VTLEVLMGK 69
           +  E+L GK
Sbjct: 205 IMAEMLTGK 213

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 20/134 (14%)

Query: 2   NIILNSNLEAFVADFGTARLL------HADSSNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI+L S+ +  + DFG  R L      +    +  +    + + APE   T   +   DV
Sbjct: 127 NILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKV---PFAWCAPESLRTRTFSHASDV 183

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIM-LIDVLDQRLPPPVDQKVIQDILLASTI 114
           + FGV   E  M  +  +  + LS S   +I+  ID   +RL  P      QDI     +
Sbjct: 184 WMFGVTLWE--MFTYGEEPWAGLSGS---QILKKIDKEGERLERPEACP--QDIY---NV 233

Query: 115 SFACLQSNPKSRPT 128
              C   NP  RPT
Sbjct: 234 MLQCWAHNPADRPT 247

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 33/146 (22%), Positives = 64/146 (43%), Gaps = 17/146 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE---KCDVYSF 58
           NI+L+      + DFG+A ++   +       GT  ++APE+   M   +   K DV+S 
Sbjct: 145 NILLSEPGLVKLGDFGSASIMAPANX----FVGTPYWMAPEVILAMDEGQYDGKVDVWSL 200

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G+  +E+   K P   ++++S+        +  + Q   P +      +         +C
Sbjct: 201 GITCIELAERKPPLFNMNAMSA--------LYHIAQNESPALQSGHWSEYF--RNFVDSC 250

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTPL 144
           LQ  P+ RPT + + +   + R+ P 
Sbjct: 251 LQKIPQDRPTSEVLLKHRFVLRERPP 276

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N +LN N+   VADFG ++ +++    R   A      ++A E     V T   DV++FG
Sbjct: 143 NCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFG 202

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           V   E++  G+ P       +   + +I    +   RL  P D   ++D+     +   C
Sbjct: 203 VTMWEIMTRGQTP------YAGVENSEIYNYLIKGNRLKQPPD--CLEDVY---ELMCQC 251

Query: 119 LQSNPKSRPTMQYVSQEF 136
               PK RP+ Q++  + 
Sbjct: 252 WSPEPKCRPSFQHLRDQL 269

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 133 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 190

Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 191 SLVEMAIGRYP 201

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 22/70 (31%), Positives = 33/70 (47%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+      + DFG ++             GT  Y+APE+      T+  D +SFGV+
Sbjct: 128 NILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVL 187

Query: 62  TLEVLMGKHP 71
             E+L G  P
Sbjct: 188 MFEMLTGSLP 197

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 170 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 229

Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 230 VLLWEIFTLGGSP 242

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 23/151 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           N ++ +NL   + DFG +R +++    R    T+L     ++ PE       T + DV+S
Sbjct: 153 NCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLP--IRWMPPESIMYRKFTTESDVWS 210

Query: 58  FGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTI 114
           FGV+  E+   GK P   LS          ++  +   R+   P V  K + DI+L    
Sbjct: 211 FGVILWEIFTYGKQPWFQLS-------NTEVIECITQGRVLERPRVCPKEVYDIML---- 259

Query: 115 SFACLQSNPKSRPTMQYVSQE-FLITRKTPL 144
              C Q  P+ R  ++ + +    + + TP+
Sbjct: 260 --GCWQREPQQRLNIKEIYKILHALGKATPI 288

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 8/94 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA--GTYGYIAPE-LAYTMVMTEKCDVYSF 58
           NI+L+ +    ++D G A     D S +   A  GT+GY+APE L   +      D +S 
Sbjct: 127 NILLDEHGHVRISDLGLA----CDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSL 182

Query: 59  GVVTLEVLMGKHP-RDLLSSLSSSSDPKIMLIDV 91
           G +  ++L G  P R   +      D   + + V
Sbjct: 183 GCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAV 216

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 12/128 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGV 60
           NI++++N    +ADFG A+ +   S  ++   G+  ++APE +A         D++S G 
Sbjct: 132 NILVDTNGVVKLADFGMAKQVVEFSFAKS-FKGSPYWMAPEVIAQQGGYGLAADIWSLGC 190

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
             LE+  GK P        S  +    +  +   +  PP+   +  +   A      CLQ
Sbjct: 191 TVLEMATGKPP-------WSQLEGVAAVFKIGRSKELPPIPDHLSDE---AKDFILKCLQ 240

Query: 121 SNPKSRPT 128
            +P  RPT
Sbjct: 241 RDPSLRPT 248

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFG 59
           +NI +N + E  + DFG AR  H D    T    T  Y APE+    M   +  D++S G
Sbjct: 147 SNIAVNEDCELKILDFGLAR--HTD-DEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVG 203

Query: 60  VVTLEVLMGK 69
            +  E+L GK
Sbjct: 204 CIMAELLTGK 213

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 2   NIILNSNLEAF-VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+L+ +     + DFG +++L + S   T++ GT  YI+PEL       +K D+++ G 
Sbjct: 131 NILLDKHKMVVKIGDFGISKILSSKSKAYTVV-GTPCYISPELCEGKPYNQKSDIWALGC 189

Query: 61  VTLEVL 66
           V  E+ 
Sbjct: 190 VLYELA 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L +NL   + DFG +RLL       T   GT  Y++PE         K D++S G +
Sbjct: 136 NIFLKNNLLK-IGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCI 194

Query: 62  TLEVLMGKH 70
             E+    H
Sbjct: 195 LYEMCCLAH 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 27/146 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS------SNRTLLAGTYGYIAPELAYTMVMTEKCDV 55
           NI++ S     ++DFG A++L  D                Y   APE   T   +   DV
Sbjct: 139 NILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWY---APECLRTSKFSSASDV 195

Query: 56  YSFGVVTLEVLM----GKHPRDLLSSLSSSSDPKIMLIDVLD-----QRLPPP--VDQKV 104
           +SFGV   E+       + P      +   +  ++++  +L+     +RLP P     +V
Sbjct: 196 WSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCPDEV 255

Query: 105 IQDILLASTISFACLQSNPKSRPTMQ 130
              + L       C ++ P+ RP+  
Sbjct: 256 YDLMKL-------CWEAEPQDRPSFA 274

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  V T + DV+SFG
Sbjct: 164 NVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 223

Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 224 VLLWEIFTLGGSP 236

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 36.4 bits (84), Expect = 0.004
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 4/69 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGV 60
           N+ +N + E  + DFG AR  HAD+   T    T  Y APE+    M   +  D++S G 
Sbjct: 147 NLAVNEDCELKILDFGLAR--HADAE-MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGC 203

Query: 61  VTLEVLMGK 69
           +  E+L GK
Sbjct: 204 IMAEMLTGK 212

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.97
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.96
KOG0578	550	consensus p21-activated serine/threonine protein k	99.96
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.96
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.95
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.95
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.94
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.94
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.94
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.94
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.94
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.94
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.93
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.93
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.93
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.93
KOG0198	313	consensus MEKK and related serine/threonine protei	99.93
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.93
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.92
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.92
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.92
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.92
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.91
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.91
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.91
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.91
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.91
PHA02988	283	hypothetical protein; Provisional	99.91
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.91
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.91
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.91
PHA03212	391	serine/threonine kinase US3; Provisional	99.91
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.9
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.9
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.9
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.9
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.9
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.9
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.9
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.9
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.9
KOG0605	550	consensus NDR and related serine/threonine kinases	99.9
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.9
PTZ00284	467	protein kinase; Provisional	99.9
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.9
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.9
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.9
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.9
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.9
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.9
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.9
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.9
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.9
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.9
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.9
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.9
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.89
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.89
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.89
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.89
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.89
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.89
PTZ00283	496	serine/threonine protein kinase; Provisional	99.89
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.89
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.89
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.89
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.89
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.89
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.89
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.89
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.89
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.89
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.89
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.89
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.89
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.89
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.89
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.89
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.89
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.89
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.89
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.89
PHA03211	461	serine/threonine kinase US3; Provisional	99.89
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.89
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.89
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.89
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.89
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.88
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.88
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.88
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.88
PTZ00036	440	glycogen synthase kinase; Provisional	99.88
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.88
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.88
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.88
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.88
PHA03207	392	serine/threonine kinase US3; Provisional	99.88
PTZ00267	478	NIMA-related protein kinase; Provisional	99.88
KOG0589	426	consensus Serine/threonine protein kinase [General	99.88
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.88
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.88
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.88
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.88
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.88
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.88
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.88
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.88
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.88
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.88
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.88
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.88
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.88
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.88
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.88
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.88
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.88
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.88
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.88
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.87
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.87
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.87
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.87
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.87
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.87
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.87
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.87
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.87
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.87
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.87
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.87
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.87
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.87
PHA03209	357	serine/threonine kinase US3; Provisional	99.87
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.87
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.87
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.87
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.87
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.87
KOG0610	459	consensus Putative serine/threonine protein kinase	99.87
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.87
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.87
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.87
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.87
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.87
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.87
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.87
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.87
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.87
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.87
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.87
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.87
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.87
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.86
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.86
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.86
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.86
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.86
PHA03210	501	serine/threonine kinase US3; Provisional	99.86
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.86
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.86
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.86
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.86
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.86
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.86
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.86
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.86
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.86
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.86
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.86
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.86
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.86
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.86
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.86
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.86
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.86
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.86
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.86
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.86
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.86
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.86
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.86
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.86
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.85
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.85
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.85
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.85
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.85
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.85
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.85
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.85
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.85
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.85
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.85
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.85
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.85
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.85
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.85
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.85
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.85
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.85
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.85
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.85
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.85
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.85
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.85
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.85
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.85
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.85
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.85
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.85
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.85
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.85
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.85
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.85
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.85
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.85
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.85
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.85
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.85
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.85
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.85
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.84
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.84
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.84
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.84
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.84
KOG0584	632	consensus Serine/threonine protein kinase [General	99.84
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.84
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.84
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.84
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.84
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.84
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.84
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.84
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.84
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.84
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.84
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.84
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.84
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.84
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.84
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.84
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.84
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.84
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.84
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.84
PHA02882	294	putative serine/threonine kinase; Provisional	99.84
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.84
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.84
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.84
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.84
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.84
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.84
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.84
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.84
PLN00009	294	cyclin-dependent kinase A; Provisional	99.84
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.84
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.84
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.84
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.84
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.84
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.84
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.84
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.84
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.84
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.83
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.83
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.83
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.83
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.83
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.83
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.83
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.83
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.83
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.83
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.83
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.83
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.83
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.83
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.83
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.83
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.83
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.83
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.83
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.83
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.83
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.83
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.83
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.83
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.83
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.83
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.83
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.83
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.83
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.82
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.82
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.82
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.82
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.82
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.82
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.82
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.82
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.82
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.82
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.82
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.82
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.82
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.82
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.82
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.82
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.82
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.82
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.82
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.82
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.82
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.82
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.82
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.82
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.82
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.82
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.82
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.81
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.81
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.81
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.81
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.81
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.81
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.81
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.81
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.81
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.81
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.81
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.81
PLN00181	793	protein SPA1-RELATED; Provisional	99.81
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.81
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.81
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.81
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.81
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.81
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.81
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.81
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.81
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.81
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.8
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.8
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.8
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.8
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.8
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.8
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.8
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.8
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.8
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.8
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.8
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.8
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.8
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.8
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.8
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.79
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.79
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.79
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.79
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.79
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.78
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.78
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.78
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.78
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.78
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.78
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.78
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.78
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.77
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.77
KOG0586	596	consensus Serine/threonine protein kinase [General	99.77
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.77
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.77
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.77
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.77
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.77
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.77
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.75
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.74
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.74
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.74
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.74
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.73
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.72
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.71
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.7
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.69
KOG3653	534	consensus Transforming growth factor beta/activin	99.69
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.68
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.67
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.67
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.67
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.66
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.65
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.64
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.55
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.54
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.49
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.47
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.46
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.38
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.35
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.33
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.33
KOG1152	772	consensus Signal transduction serine/threonine kin	99.28
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.26
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.24
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.24
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.21
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.16
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.93
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.55
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.55
COG4248	637	Uncharacterized protein with protein kinase and he	98.29
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.25
KOG1266	458	consensus Protein kinase [Signal transduction mech	97.97
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	97.96
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.95
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	97.82
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.67
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	97.63
PRK09188	365	serine/threonine protein kinase; Provisional	97.48
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	97.33
PRK12274	218	serine/threonine protein kinase; Provisional	97.2
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	97.18
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	94.67
KOG1243	690	consensus Protein kinase [General function predict	94.57
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	94.5
KOG0576	829	consensus Mitogen-activated protein kinase kinase	91.32
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	90.25
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	88.82
KOG1093	725	consensus Predicted protein kinase (contains TBC a	88.19
smart00090	237	RIO RIO-like kinase.	86.2
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	84.1
PRK14879	211	serine/threonine protein kinase; Provisional	81.71
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	80.73
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	80.54

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.97  E-value=3e-31  Score=176.99  Aligned_cols=134  Identities=24%  Similarity=0.382  Sum_probs=106.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++++|.|||||||+++.+.++  ...+.+||..||+||.+.+..|+.++||||+|+.++|+..|+.|+...  ...
T Consensus       208 sNlLvNskGeVKicDFGVS~~lvnS--~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~--~~~  283 (364)
T KOG0581|consen  208 SNLLVNSKGEVKICDFGVSGILVNS--IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP--NPP  283 (364)
T ss_pred             HHeeeccCCCEEeccccccHHhhhh--hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc--CCC
Confidence            6999999999999999999987766  556788999999999999999999999999999999999999998632  111


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHH-HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQK-VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .......+.. +...+++..+.. +..   .+++|+..||++||.+|+|+.|+++|+|+++..
T Consensus       284 ~~~~~~Ll~~-Iv~~ppP~lP~~~fS~---ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~  342 (364)
T KOG0581|consen  284 YLDIFELLCA-IVDEPPPRLPEGEFSP---EFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFE  342 (364)
T ss_pred             CCCHHHHHHH-HhcCCCCCCCcccCCH---HHHHHHHHHhcCCcccCCCHHHHhcCHHHhhcc
Confidence            2222333333 334444444443 333   358899999999999999999999999999743

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.6e-29  Score=177.63  Aligned_cols=129  Identities=26%  Similarity=0.376  Sum_probs=105.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|++|+++.+|||+|||+|..+........+.+|||.|.|||++....++..+||||+||++|.++.|+|||...     
T Consensus       147 GNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk-----  221 (592)
T KOG0575|consen  147 GNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK-----  221 (592)
T ss_pred             hheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc-----
Confidence            599999999999999999998887767778899999999999999888899999999999999999999999722     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                        .....+..........|.     .....+++||.++|..||.+|||+++|++|.||...
T Consensus       222 --~vkety~~Ik~~~Y~~P~-----~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~g  275 (592)
T KOG0575|consen  222 --TVKETYNKIKLNEYSMPS-----HLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKSG  275 (592)
T ss_pred             --hHHHHHHHHHhcCccccc-----ccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhCC
Confidence              233344444444443332     122235789999999999999999999999999553

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-29  Score=174.20  Aligned_cols=134  Identities=19%  Similarity=0.304  Sum_probs=106.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||++..+........+++|||+|||||++....|+++.||||+|++++||+.|++||-...+   
T Consensus       398 DnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYlnE~P---  474 (550)
T KOG0578|consen  398 DNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLNENP---  474 (550)
T ss_pred             ceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccCCCh---
Confidence            58999999999999999999888777677789999999999999999999999999999999999999999863322   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                           ......+...-.+.+ .........+++|+.+||..|++.|+++.++|+|+|+.-..+
T Consensus       475 -----lrAlyLIa~ng~P~l-k~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~a~p  531 (550)
T KOG0578|consen  475 -----LRALYLIATNGTPKL-KNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKMAKP  531 (550)
T ss_pred             -----HHHHHHHhhcCCCCc-CCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhhcCC
Confidence                 122222222222221 222334445789999999999999999999999999965443

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-29  Score=171.28  Aligned_cols=131  Identities=27%  Similarity=0.426  Sum_probs=105.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||+..+|.+|++|||++.++........+++||+.|||||++.+..|+.++||||+|++.+||.+|.+|+....++..
T Consensus       140 anil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrv  219 (467)
T KOG0201|consen  140 ANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRV  219 (467)
T ss_pred             cceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceE
Confidence            58999999999999999999887766666789999999999999988899999999999999999999999875554321


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                              .-.+....|+.+..   .....+++|+..||.+||+.||+|.+++.|.|++...
T Consensus       220 --------lflIpk~~PP~L~~---~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  220 --------LFLIPKSAPPRLDG---DFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKRAK  270 (467)
T ss_pred             --------EEeccCCCCCcccc---ccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHhcC
Confidence                    11233333333322   2223358899999999999999999999999999843

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=6.5e-29  Score=168.00  Aligned_cols=133  Identities=23%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             CceeecCC---CceEEcccccceeccCCCCccccccccccccCCcccccCCC---CCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSN---LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM---TEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~---~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~---~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.+   ..+||+|||+++..+ ......+.+||+.|.|||++.....   ..+.||||+||++|-+++|.+||..
T Consensus       305 eNILl~~~~e~~llKItDFGlAK~~g-~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~  383 (475)
T KOG0615|consen  305 ENILLSNDAEDCLLKITDFGLAKVSG-EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSE  383 (475)
T ss_pred             ceEEeccCCcceEEEecccchhhccc-cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCccc
Confidence            69999866   778999999999876 3345567899999999999987653   3478999999999999999999972


Q ss_pred             ccccCCCCCchh-hHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKI-MLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .       .... ...+...+++.. .+....+......+|+..||..||++|||++++++|+|++...
T Consensus       384 ~-------~~~~sl~eQI~~G~y~f-~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  384 E-------YTDPSLKEQILKGRYAF-GPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             c-------cCCccHHHHHhcCcccc-cChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhccc
Confidence            2       2222 444444444432 2233444455678999999999999999999999999999644

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=5.9e-28  Score=164.85  Aligned_cols=135  Identities=23%  Similarity=0.364  Sum_probs=102.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc----ccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~----~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||||+++|.|||+|||++..+..+....    .+..|+++|+|||++.+.  .|+.++||||||++..|+.+|..||..
T Consensus       155 gnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k  234 (516)
T KOG0582|consen  155 GNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSK  234 (516)
T ss_pred             ccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCccc
Confidence            59999999999999999987665443222    456899999999995432  478999999999999999999999973


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCC-----CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPV-----DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..       +-..+...+.+.++.+.     ..........+.+++..||++||++|||+++++.|.||+...
T Consensus       235 ~p-------PmkvLl~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k  300 (516)
T KOG0582|consen  235 YP-------PMKVLLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAK  300 (516)
T ss_pred             CC-------hHHHHHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhcc
Confidence            33       33444555555554221     122223344678899999999999999999999999999754

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.94  E-value=3.3e-28  Score=159.35  Aligned_cols=140  Identities=24%  Similarity=0.287  Sum_probs=102.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.+|.+||||||.++.+.........++.|.+|.|||.+.+ .+|+...||||+||++.||++|.+.|...+..+
T Consensus       130 ENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiD  209 (396)
T KOG0593|consen  130 ENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDID  209 (396)
T ss_pred             hheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHH
Confidence            6999999999999999999987755555666889999999999887 678999999999999999999999987444322


Q ss_pred             CCCCch-------hhHHHhhhc-------CCC-----CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPK-------IMLIDVLDQ-------RLP-----PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~-------~~~~~~~~~-------~~~-----~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .-....       .........       .+|     .+.....+.....+.+|+..||+.||++|++.++++.|++|.+
T Consensus       210 QLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~  289 (396)
T KOG0593|consen  210 QLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDG  289 (396)
T ss_pred             HHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHH
Confidence            100000       000011111       011     1122233333446789999999999999999999999999853

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.94  E-value=1.6e-27  Score=159.16  Aligned_cols=129  Identities=25%  Similarity=0.343  Sum_probs=102.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||||.+|+++|+|||+++........+.+.+||+.|+|||++....++.++|.||+|+++|+|++|.+||.       
T Consensus       154 ENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~-------  226 (357)
T KOG0598|consen  154 ENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFY-------  226 (357)
T ss_pred             HHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCc-------
Confidence            5999999999999999999976666667777899999999999999999999999999999999999999996       


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp----s~~~~~~~~~~~~  140 (160)
                      ................+.+ +..   ....+++++.++|..||++|.    .++++.+|+||..
T Consensus       227 ~~~~~~~~~~I~~~k~~~~-p~~---ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~  286 (357)
T KOG0598|consen  227 AEDVKKMYDKILKGKLPLP-PGY---LSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKG  286 (357)
T ss_pred             CccHHHHHHHHhcCcCCCC-Ccc---CCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCccccc
Confidence            2223333344443331211 110   112247899999999999994    7999999999986

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=4e-27  Score=167.42  Aligned_cols=134  Identities=25%  Similarity=0.329  Sum_probs=108.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|+|||.++++||+|||.|..-. ......+.+|++.|.+||++.+.+| +.++||||+|||+|.+++|..||+      
T Consensus       141 ENlLLd~~~nIKIADFGMAsLe~-~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd------  213 (786)
T KOG0588|consen  141 ENLLLDVKNNIKIADFGMASLEV-PGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD------  213 (786)
T ss_pred             hhhhhhcccCEeeeccceeeccc-CCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC------
Confidence            58999999999999999997533 3445566889999999999999988 668999999999999999999998      


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH  147 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~  147 (160)
                       .......+.++..+.+..|-.     ....+++|+.+|+..||.+|.|+++|+.|+|+..-......
T Consensus       214 -DdNir~LLlKV~~G~f~MPs~-----Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~~~  275 (786)
T KOG0588|consen  214 -DDNIRVLLLKVQRGVFEMPSN-----ISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLPSS  275 (786)
T ss_pred             -CccHHHHHHHHHcCcccCCCc-----CCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCCCChh
Confidence             445566677776665554421     12235889999999999999999999999999975544333

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.94  E-value=6.3e-27  Score=163.04  Aligned_cols=127  Identities=23%  Similarity=0.389  Sum_probs=101.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-------------cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-------------RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-------------~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~   67 (160)
                      +|||+|+++++||+|||.++.+......             ..+++||-.|.+||++..+..++.+|+|+|||++|+|+.
T Consensus       203 ENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmla  282 (604)
T KOG0592|consen  203 ENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLA  282 (604)
T ss_pred             hheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhc
Confidence            6999999999999999999987532211             134789999999999999999999999999999999999


Q ss_pred             cCCccccccccCCCCCchhhHHHh--hhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           68 GKHPRDLLSSLSSSSDPKIMLIDV--LDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      |++||....       .-....+.  +...++..++       ..+.+|+.++|..||.+|+|+++|.+|+||...
T Consensus       283 G~PPFra~N-------eyliFqkI~~l~y~fp~~fp-------~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~V  344 (604)
T KOG0592|consen  283 GQPPFRAAN-------EYLIFQKIQALDYEFPEGFP-------EDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGV  344 (604)
T ss_pred             CCCCCcccc-------HHHHHHHHHHhcccCCCCCC-------HHHHHHHHHHHccCccccccHHHHhhCcccccC
Confidence            999997333       22333333  4444555444       234789999999999999999999999999873

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.7e-26  Score=150.07  Aligned_cols=126  Identities=24%  Similarity=0.298  Sum_probs=99.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      .||+++.+|.|||+|||+++.+.+......+.+|||.||+||.+...+++.++|+||+||++|||..-++||...     
T Consensus       157 aNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~-----  231 (375)
T KOG0591|consen  157 ANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD-----  231 (375)
T ss_pred             hheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc-----
Confidence            499999999999999999998887777777899999999999999999999999999999999999999999732     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                         .-..+.+.+.+.-.++.+....  ...+.+++..|+..||+.||+.-.++...
T Consensus       232 ---n~~~L~~KI~qgd~~~~p~~~Y--S~~l~~li~~ci~vd~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  232 ---NLLSLCKKIEQGDYPPLPDEHY--STDLRELINMCIAVDPEQRPDTVPYVQDI  282 (375)
T ss_pred             ---cHHHHHHHHHcCCCCCCcHHHh--hhHHHHHHHHHccCCcccCCCcchHHHHH
Confidence               2333444555554444543332  23357789999999999999954444433

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.94  E-value=4.3e-26  Score=157.12  Aligned_cols=131  Identities=31%  Similarity=0.466  Sum_probs=99.7

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccc--cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY--TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~--~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++ ++||+|||+++.............||+.|||||++.  ...++.++|+||||+++||+++|+.||.... 
T Consensus       172 ~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~-  250 (362)
T KOG0192|consen  172 DNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLA-  250 (362)
T ss_pred             hhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCC-
Confidence            599999998 999999999987665433333367899999999999  5589999999999999999999999997333 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            .......+......++.+..+...   +..++..||+.||..||++.+++..+.....
T Consensus       251 ------~~~~~~~v~~~~~Rp~~p~~~~~~---l~~l~~~CW~~dp~~RP~f~ei~~~l~~~~~  305 (362)
T KOG0192|consen  251 ------PVQVASAVVVGGLRPPIPKECPPH---LSSLMERCWLVDPSRRPSFLEIVSRLESIMS  305 (362)
T ss_pred             ------HHHHHHHHHhcCCCCCCCccCCHH---HHHHHHHhCCCCCCcCCCHHHHHHHHHHHHH
Confidence                  222233333344444444333333   4678889999999999999999998876643

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.93  E-value=7.5e-27  Score=164.28  Aligned_cols=128  Identities=29%  Similarity=0.471  Sum_probs=106.8

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSS   81 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~   81 (160)
                      ||||+.+..|||+|||.++..... .....+.||..|||||++...+++.++||||||||+|||++|..||.....    
T Consensus       242 NiLIs~~d~VKIsDFGTS~e~~~~-STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVds----  316 (904)
T KOG4721|consen  242 NILISYDDVVKISDFGTSKELSDK-STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDS----  316 (904)
T ss_pred             ceEeeccceEEeccccchHhhhhh-hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccch----
Confidence            899999999999999999865433 444568899999999999999999999999999999999999999974433    


Q ss_pred             CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           82 SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                         ...++.+..+.+..+++..+++-+   +-|+.+||+..|.+||++.+++.|+-+..
T Consensus       317 ---sAIIwGVGsNsL~LpvPstcP~Gf---klL~Kqcw~sKpRNRPSFrqil~HldIa~  369 (904)
T KOG4721|consen  317 ---SAIIWGVGSNSLHLPVPSTCPDGF---KLLLKQCWNSKPRNRPSFRQILLHLDIAS  369 (904)
T ss_pred             ---heeEEeccCCcccccCcccCchHH---HHHHHHHHhcCCCCCccHHHHHHHHhhcC
Confidence               334555666667777777777664   45788999999999999999999988765

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.4e-26  Score=154.25  Aligned_cols=142  Identities=25%  Similarity=0.238  Sum_probs=100.7

Q ss_pred             CceeecCCCceEEcccccceeccCC--CCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD--SSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|++++.+..+||+|||+++.....  ....+.++.|.+|.|||++.. ..++.+.||||+||++.||++|++.|.+.+.
T Consensus       154 sNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~  233 (359)
T KOG0660|consen  154 SNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDY  233 (359)
T ss_pred             hheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCch
Confidence            5999999999999999999987542  112234677999999998764 4588999999999999999999999864332


Q ss_pred             cCC-------CCCchhh------------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSS-------SSDPKIM------------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..+       ...+...            ..+.+....+.++....+.....+.+|+.+||..||.+|+|++++++|+++
T Consensus       234 v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl  313 (359)
T KOG0660|consen  234 VHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYL  313 (359)
T ss_pred             HHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhh
Confidence            211       1111111            111122222333333333344567899999999999999999999999999


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ..-.
T Consensus       314 ~~~h  317 (359)
T KOG0660|consen  314 APYH  317 (359)
T ss_pred             hhhc
Confidence            9733

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=8.1e-26  Score=156.96  Aligned_cols=125  Identities=24%  Similarity=0.424  Sum_probs=93.5

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcccc-ccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~-~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      |||++++..+||+|||+++...++...... ..-+..|+|||.+..+.++.++|+|||||++||+++ |+.|+.      
T Consensus       333 NiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~py~------  406 (468)
T KOG0197|consen  333 NILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVPYP------  406 (468)
T ss_pred             heeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCCCC------
Confidence            999999999999999999965544332222 223447999999999999999999999999999996 788865      


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                       . .........+......+.+..|+..+-   ++|..||+.+|++|||++.+...+.
T Consensus       407 -~-msn~ev~~~le~GyRlp~P~~CP~~vY---~lM~~CW~~~P~~RPtF~~L~~~l~  459 (468)
T KOG0197|consen  407 -G-MSNEEVLELLERGYRLPRPEGCPDEVY---ELMKSCWHEDPEDRPTFETLREVLE  459 (468)
T ss_pred             -C-CCHHHHHHHHhccCcCCCCCCCCHHHH---HHHHHHhhCCcccCCCHHHHHHHHH
Confidence             1 223334444555555555556666543   5889999999999999997766543

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.93  E-value=1.9e-26  Score=161.94  Aligned_cols=137  Identities=23%  Similarity=0.256  Sum_probs=108.1

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSS   81 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~   81 (160)
                      |||++.+|.+|+||||+++.++.+........|||.|||||.+.+++++..+|+||+||++||+++|+|||...+     
T Consensus       130 niLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~s-----  204 (808)
T KOG0597|consen  130 NILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYARS-----  204 (808)
T ss_pred             eeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHHH-----
Confidence            899999999999999999998877777777889999999999999999999999999999999999999996211     


Q ss_pred             CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccccccc
Q 040414           82 SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAI  150 (160)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~~~  150 (160)
                         -..+.+.+......+..    .....+..|++..|.+||..|.|..+++.|+|.++.......+..
T Consensus       205 ---i~~Lv~~I~~d~v~~p~----~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~~~~~~~~~  266 (808)
T KOG0597|consen  205 ---ITQLVKSILKDPVKPPS----TASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKINIAELPAQ  266 (808)
T ss_pred             ---HHHHHHHHhcCCCCCcc----cccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhhhhhhccccc
Confidence               12223333333322222    122235779999999999999999999999999986655544443

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=2.4e-26  Score=154.57  Aligned_cols=134  Identities=24%  Similarity=0.415  Sum_probs=96.6

Q ss_pred             CceeecC-CCceEEcccccceeccCCC---CccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++. ++.+||+|||+++......   .......||+.|+|||++.++.. ...+|+||+||++.||++|.+||...
T Consensus       146 ~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~  225 (313)
T KOG0198|consen  146 ANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF  225 (313)
T ss_pred             ceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh
Confidence            5999999 7999999999988655311   12334679999999999986433 34899999999999999999998743


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                           .............. ..+..+...   ....++|+.+|+..||+.||||++++.|+|......
T Consensus       226 -----~~~~~~~~~ig~~~-~~P~ip~~l---s~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~~  284 (313)
T KOG0198|consen  226 -----FEEAEALLLIGRED-SLPEIPDSL---SDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNSI  284 (313)
T ss_pred             -----cchHHHHHHHhccC-CCCCCCccc---CHHHHHHHHHHhhcCcccCcCHHHHhhChhhhcccc
Confidence                 01111222222222 222333222   223578999999999999999999999999987554

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1.6e-25  Score=155.34  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=99.9

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccCC-C-CCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-M-TEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~-~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|+|++.+ +++||+|||++...........+.+|++.|+|||++.+.. | +.++|+||+||++|.|++|..||+.   
T Consensus       149 ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d---  225 (370)
T KOG0583|consen  149 ENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDD---  225 (370)
T ss_pred             HHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCC---
Confidence            59999999 9999999999997633334455678999999999999877 7 4679999999999999999999983   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          .................+..-.    ...+..|+.+||..||..|+|+.+++.|+|++.
T Consensus       226 ----~~~~~l~~ki~~~~~~~p~~~~----S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  226 ----SNVPNLYRKIRKGEFKIPSYLL----SPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             ----ccHHHHHHHHhcCCccCCCCcC----CHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence                2223333333333332222110    233578999999999999999999999999997

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-25  Score=159.19  Aligned_cols=128  Identities=20%  Similarity=0.304  Sum_probs=100.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||||.+|++||+|||+++.-......+.+++||+.|+|||++.+..|+.++|.||+||++|+|+.|++||...+    
T Consensus       497 dNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gdd----  572 (694)
T KOG0694|consen  497 DNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDD----  572 (694)
T ss_pred             hheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCC----
Confidence            5999999999999999999976655567788999999999999999999999999999999999999999997332    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                         ........+.-...-|.  ...   .....+++++|..+|++|.-     +++|..|+||..
T Consensus       573 ---Eee~FdsI~~d~~~yP~--~ls---~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~  629 (694)
T KOG0694|consen  573 ---EEEVFDSIVNDEVRYPR--FLS---KEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRS  629 (694)
T ss_pred             ---HHHHHHHHhcCCCCCCC--ccc---HHHHHHHHHHhccCcccccCCCCCCchhhhhCCcccc
Confidence               22222222222221111  111   22467899999999999976     589999999985

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.92  E-value=1.5e-24  Score=137.27  Aligned_cols=128  Identities=18%  Similarity=0.159  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+|+  ||.++......     ..+++.|+|||++.+..++.++||||+|+++|+|++|..||......  
T Consensus        40 ~Nil~~~~~~~~~--fG~~~~~~~~~-----~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~~--  110 (176)
T smart00750       40 GNILLTWDGLLKL--DGSVAFKTPEQ-----SRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEEREL--  110 (176)
T ss_pred             ccEeEcCccceee--ccceEeecccc-----CCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccchh--
Confidence            5999999999999  99987654322     24788999999999888999999999999999999999998532211  


Q ss_pred             CCCchhhHHHhhhcCCCC---C-CCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPP---P-VDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          ..............   . ...........+.+++.+||..+|++||++.+++.|++....
T Consensus       111 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~  171 (176)
T smart00750      111 ----SAILEILLNGMPADDPRDRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALFA  171 (176)
T ss_pred             ----cHHHHHHHHHhccCCccccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHH
Confidence                11111111111111   0 011111111146889999999999999999999999998754

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.92  E-value=2.4e-25  Score=144.55  Aligned_cols=131  Identities=23%  Similarity=0.299  Sum_probs=97.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC------CCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM------VMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++++.+++|+|||.+..+..+ ......+|||+|+|||.+.-.      .|+...|+|++|+++|.++.|.+||- 
T Consensus       152 ENILlddn~~i~isDFGFa~~l~~G-ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFw-  229 (411)
T KOG0599|consen  152 ENILLDDNMNIKISDFGFACQLEPG-EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFW-  229 (411)
T ss_pred             hheeeccccceEEeccceeeccCCc-hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchh-
Confidence            6999999999999999999876543 334557899999999988532      36678999999999999999999983 


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ....-..+.-.+.+..... .+.........++|+.+||+.||++|.|+++++.|+|+..
T Consensus       230 ------HRkQmlMLR~ImeGkyqF~-speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  230 ------HRKQMLMLRMIMEGKYQFR-SPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             ------HHHHHHHHHHHHhcccccC-CcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence                  1111122222233333221 1223333445689999999999999999999999999964

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.92  E-value=3.2e-25  Score=147.04  Aligned_cols=142  Identities=20%  Similarity=0.140  Sum_probs=102.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      ||+|+++.|.+||+|||+++.+++........+-|.+|.|||.+.+.. |+++.||||+|||+.|++.++|.|...+.+.
T Consensus       206 SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~d  285 (419)
T KOG0663|consen  206 SNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEID  285 (419)
T ss_pred             hheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHH
Confidence            699999999999999999999988777777788899999999998875 7899999999999999999999887443322


Q ss_pred             C-------CCCchhhHHH------hhh-----cCCCCCCCHHHHH--HHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 S-------SSDPKIMLID------VLD-----QRLPPPVDQKVIQ--DILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~-------~~~~~~~~~~------~~~-----~~~~~~~~~~~~~--~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      .       -..+...++.      ...     ..+...+...+..  ......+|+..+|..||.+|.|+++.++|.||.
T Consensus       286 Ql~~If~llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~  365 (419)
T KOG0663|consen  286 QLDKIFKLLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFR  365 (419)
T ss_pred             HHHHHHHHhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcccccc
Confidence            1       0001111111      000     0000000001111  123457899999999999999999999999999


Q ss_pred             ccC
Q 040414          140 RKT  142 (160)
Q Consensus       140 ~~~  142 (160)
                      +.-
T Consensus       366 e~P  368 (419)
T KOG0663|consen  366 ETP  368 (419)
T ss_pred             cCC
Confidence            743

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.91  E-value=5.1e-25  Score=141.92  Aligned_cols=141  Identities=23%  Similarity=0.227  Sum_probs=101.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|+|++++|.+||+|||+++.++.......+.+-|.+|.|||.+.+.+ |+...||||+||++.|++.|.|.|.+.+...
T Consensus       130 nNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDid  209 (318)
T KOG0659|consen  130 NNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDID  209 (318)
T ss_pred             cceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHH
Confidence            599999999999999999999887666555567899999999987764 7889999999999999999988876332211


Q ss_pred             C-------------CCCchh--hH-HHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 S-------------SSDPKI--ML-IDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~-------------~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      +             ..++..  .. .-.+...+.++....+........+|+.++|..||.+|.|+.|++.|.||...
T Consensus       210 QL~~If~~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~  287 (318)
T KOG0659|consen  210 QLSKIFRALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSL  287 (318)
T ss_pred             HHHHHHHHcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcC
Confidence            1             011110  00 00111111122222233334445889999999999999999999999999973

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.91  E-value=2.4e-25  Score=153.89  Aligned_cols=145  Identities=26%  Similarity=0.286  Sum_probs=95.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||+++.......   ......+++.|+|||++.+  ..++.++|+||+|+++|+|++|++||...
T Consensus       132 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~  211 (338)
T cd07859         132 KNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGK  211 (338)
T ss_pred             HHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            489999999999999999875432221   1123568889999999865  45788999999999999999999998632


Q ss_pred             cccCC--------CCCchhh-----------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           76 SSLSS--------SSDPKIM-----------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        76 ~~~~~--------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .....        .......           ....+....+.+...........+.+++.+||+.||++|||+++++.|+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp  291 (338)
T cd07859         212 NVVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADP  291 (338)
T ss_pred             ChHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCc
Confidence            21000        0000000           0000111111111111111123357899999999999999999999999


Q ss_pred             hhhccCccc
Q 040414          137 LITRKTPLV  145 (160)
Q Consensus       137 ~~~~~~~~~  145 (160)
                      |+.......
T Consensus       292 ~f~~~~~~~  300 (338)
T cd07859         292 YFKGLAKVE  300 (338)
T ss_pred             hhhhcCccc
Confidence            998755433

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-25  Score=153.00  Aligned_cols=143  Identities=22%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-cCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||+..+..+||+|||++|.+.+.. +.+.++.|.+|.|||++. .+-|+.+.|||++||+++|+.+-++.|.+.+.++
T Consensus       139 ENiLi~~~~~iKiaDFGLARev~Skp-PYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~D  217 (538)
T KOG0661|consen  139 ENILISGNDVIKIADFGLAREVRSKP-PYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEID  217 (538)
T ss_pred             hheEecccceeEecccccccccccCC-CcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHH
Confidence            69999999999999999999876554 444577899999999875 4557899999999999999999999987544322


Q ss_pred             C-------------CCCc-hhhHHHhhhcCCCCC----CCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 S-------------SSDP-KIMLIDVLDQRLPPP----VDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~-------------~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .             ...+ ...+...+.-+.+.-    +..........+.+|+..|+.+||++||||.++++|+||...
T Consensus       218 qi~KIc~VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~  297 (538)
T KOG0661|consen  218 QIYKICEVLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVG  297 (538)
T ss_pred             HHHHHHHHhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCcccccc
Confidence            1             1111 122333333333221    111222233456889999999999999999999999999975


Q ss_pred             Ccc
Q 040414          142 TPL  144 (160)
Q Consensus       142 ~~~  144 (160)
                      ...
T Consensus       298 ~~~  300 (538)
T KOG0661|consen  298 RAS  300 (538)
T ss_pred             ccc
Confidence            544

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.91  E-value=6.2e-25  Score=142.57  Aligned_cols=131  Identities=24%  Similarity=0.339  Sum_probs=98.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC---CCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~---~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      ||||+|..|.+||||||++-.+..+... ....|.+.||+||.+-..   .|..++|+||+|++++|+.+|+.||.... 
T Consensus       221 SNILlDe~GniKlCDFGIsGrlvdSkAh-trsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~-  298 (391)
T KOG0983|consen  221 SNILLDERGNIKLCDFGISGRLVDSKAH-TRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCK-  298 (391)
T ss_pred             cceEEccCCCEEeecccccceeeccccc-ccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCC-
Confidence            6999999999999999999877665433 334578889999998654   46778999999999999999999986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           .....+..++.. .|+.++... .....+++|+..||.+|+.+||.-.++++|+|+..
T Consensus       299 -----tdFe~ltkvln~-ePP~L~~~~-gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  299 -----TDFEVLTKVLNE-EPPLLPGHM-GFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKR  354 (391)
T ss_pred             -----ccHHHHHHHHhc-CCCCCCccc-CcCHHHHHHHHHHhhcCcccCcchHHHhcCcceee
Confidence                 223333444432 222222111 13344688999999999999999999999999876

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.91  E-value=6.1e-25  Score=148.95  Aligned_cols=130  Identities=25%  Similarity=0.275  Sum_probs=91.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++..... .......+++.|+|||.+.+..++.++|+||+|+++|++++|.+||......  
T Consensus       139 ~Nil~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~--  215 (290)
T cd07862         139 QNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDV--  215 (290)
T ss_pred             HHEEEcCCCCEEEccccceEeccCC-cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHH--
Confidence            4899999999999999999865433 2223355788999999998888888999999999999999999998632211  


Q ss_pred             CCCchhhHHHhhh----------------------cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLD----------------------QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           ........                      .....+...........+.+++.+||+.||++|||+.++++|+||
T Consensus       216 -----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         216 -----DQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             -----HHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence                 11111100                      000000000001122345789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>PHA02988 hypothetical protein; Provisional

Probab=99.91  E-value=2.5e-24  Score=145.67  Aligned_cols=125  Identities=18%  Similarity=0.236  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||+++.+....   ....++..|+|||.+.+  ..++.++|+||+|+++|++++|..||...   
T Consensus       152 ~nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~---  225 (283)
T PHA02988        152 VSFLVTENYKLKIICHGLEKILSSPP---FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENL---  225 (283)
T ss_pred             hhEEECCCCcEEEcccchHhhhcccc---ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCC---
Confidence            58999999999999999988654322   12457788999999876  56788999999999999999999999632   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          ................+.+..+..   .+.+++.+||+.||++|||+++++..+-.
T Consensus       226 ----~~~~~~~~i~~~~~~~~~~~~~~~---~l~~li~~cl~~dp~~Rps~~ell~~l~~  278 (283)
T PHA02988        226 ----TTKEIYDLIINKNNSLKLPLDCPL---EIKCIVEACTSHDSIKRPNIKEILYNLSL  278 (283)
T ss_pred             ----CHHHHHHHHHhcCCCCCCCCcCcH---HHHHHHHHHhcCCcccCcCHHHHHHHHHH
Confidence                122222223222222222222222   35789999999999999999999987654

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=139.30  Aligned_cols=130  Identities=25%  Similarity=0.321  Sum_probs=100.1

Q ss_pred             ceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            2 NIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         2 nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      |+|+-+   ...+||+|||++..+. +........|+|.|++||++...+++..+|||++|+++|-++.|.+||-     
T Consensus       140 nllLASK~~~A~vKL~~FGvAi~l~-~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~-----  213 (355)
T KOG0033|consen  140 NLLLASKAKGAAVKLADFGLAIEVN-DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW-----  213 (355)
T ss_pred             heeeeeccCCCceeecccceEEEeC-CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCC-----
Confidence            566632   3458999999999877 5555666889999999999999999999999999999999999999986     


Q ss_pred             CCCCCchhhHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        .........+.+....  +.+....   .....++|+.+||..||.+|.|+.+.+.|+|+..+.
T Consensus       214 --~~~~~rlye~I~~g~yd~~~~~w~~---is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  214 --DEDQHRLYEQIKAGAYDYPSPEWDT---VTPEAKSLIRRMLTVNPKKRITADEALKHPWICNRE  274 (355)
T ss_pred             --CccHHHHHHHHhccccCCCCcccCc---CCHHHHHHHHHHhccChhhhccHHHHhCCchhcchH
Confidence              2233344444443333  3322222   223458899999999999999999999999998754

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.91  E-value=1.1e-24  Score=149.81  Aligned_cols=128  Identities=21%  Similarity=0.299  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+||++|+|++|..||...     
T Consensus       124 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~-----  198 (323)
T cd05571         124 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----  198 (323)
T ss_pred             HHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCC-----
Confidence            489999999999999999875433333333456899999999998888899999999999999999999998521     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                        ................+  ..   ....+.+++.+||+.||++||     ++.++++|+|+..
T Consensus       199 --~~~~~~~~~~~~~~~~p--~~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~  256 (323)
T cd05571         199 --DHEKLFELILMEEIRFP--RT---LSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFAS  256 (323)
T ss_pred             --CHHHHHHHHHcCCCCCC--CC---CCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence              11112222221211111  11   122357899999999999999     8999999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.91  E-value=8e-25  Score=142.94  Aligned_cols=125  Identities=22%  Similarity=0.303  Sum_probs=99.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||||.+|.+||+|||.++.....   +.+.+|||.|+|||++....+..++|.|++||++|||+.|.+||..      
T Consensus       173 ENiLlD~~G~iKitDFGFAK~v~~r---T~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~------  243 (355)
T KOG0616|consen  173 ENLLLDQNGHIKITDFGFAKRVSGR---TWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYD------  243 (355)
T ss_pred             HHeeeccCCcEEEEeccceEEecCc---EEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcC------
Confidence            6999999999999999999976543   5568899999999999999999999999999999999999999972      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC-----CCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR-----PTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R-----ps~~~~~~~~~~~~  140 (160)
                       ..+-....+.+......|-  ...   ..+++|+.++|+.|-.+|     .-.++|..|+||..
T Consensus       244 -~~~~~iY~KI~~~~v~fP~--~fs---~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~  302 (355)
T KOG0616|consen  244 -DNPIQIYEKILEGKVKFPS--YFS---SDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKG  302 (355)
T ss_pred             -CChHHHHHHHHhCcccCCc--ccC---HHHHHHHHHHHhhhhHhhhcCcCCCccccccCccccc
Confidence             2233444455444443221  111   124788999999999999     45789999999986

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.91  E-value=7.1e-24  Score=149.09  Aligned_cols=141  Identities=18%  Similarity=0.174  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC-CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|+||+|+++|++++|..||.......
T Consensus       211 ~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~~~~~~  290 (391)
T PHA03212        211 ENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLD  290 (391)
T ss_pred             HhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCCccccc
Confidence            59999999999999999986533211 12223568999999999988888999999999999999999997764322111


Q ss_pred             CCCCchhhHH--------------------------HhhhcCC--C--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH
Q 040414           80 SSSDPKIMLI--------------------------DVLDQRL--P--PPVDQKVIQDILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        80 ~~~~~~~~~~--------------------------~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                      ........+.                          .......  +  .+...........+.+++.+||+.||.+|||+
T Consensus       291 ~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta  370 (391)
T PHA03212        291 GDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSSRKPGSRPLWTNLYELPIDLEYLICKMLAFDAHHRPSA  370 (391)
T ss_pred             ccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccCCCCCCCCCHHHHhhhhhhHHHHHHHHhcCChhhCCCH
Confidence            0000000000                          0000000  0  01111122223456789999999999999999


Q ss_pred             HHHHHHHhhhcc
Q 040414          130 QYVSQEFLITRK  141 (160)
Q Consensus       130 ~~~~~~~~~~~~  141 (160)
                      +++++|+|+...
T Consensus       371 ~elL~hp~f~~~  382 (391)
T PHA03212        371 EALLDFAAFQDI  382 (391)
T ss_pred             HHHhcChhhccC
Confidence            999999999763

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.90  E-value=3.3e-24  Score=145.18  Aligned_cols=138  Identities=22%  Similarity=0.165  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.++....... ......+++.|+|||++.+..++.++|+||+|+++|++++|.+||.......
T Consensus       129 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~  208 (287)
T cd07848         129 ENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEID  208 (287)
T ss_pred             HHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence            489999999999999999886543221 2223457889999999988888889999999999999999999986332110


Q ss_pred             C--------CCCchhhHHHhhh------cCCCCCC-CHH-----HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S--------SSDPKIMLIDVLD------QRLPPPV-DQK-----VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~--------~~~~~~~~~~~~~------~~~~~~~-~~~-----~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .        ...+.........      ...+... ...     .......+.+|+.+||+.||++|||++++++|+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         209 QLFTIQKVLGPLPAEQMKLFYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             HHHHHHHhhCCCCHHHHHhhhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            0        0000000000000      0000000 000     00112346899999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=6.7e-24  Score=150.19  Aligned_cols=131  Identities=27%  Similarity=0.408  Sum_probs=100.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      .|||++++|.|||+|||.+..+    .+..+++|||+|||||++.   .+.|+.++||||+|+++.++..++||+...+.
T Consensus       155 GNILLse~g~VKLaDFGSAsi~----~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA  230 (948)
T KOG0577|consen  155 GNILLSEPGLVKLADFGSASIM----APANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  230 (948)
T ss_pred             cceEecCCCeeeeccccchhhc----CchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH
Confidence            4999999999999999998754    3345689999999999875   46789999999999999999999999764333


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                      ++       .+.+ +...-++.+....+..  .+..|+..||++-|.+|||.++++.|.|+.+..+..
T Consensus       231 MS-------ALYH-IAQNesPtLqs~eWS~--~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~Rp~t  288 (948)
T KOG0577|consen  231 MS-------ALYH-IAQNESPTLQSNEWSD--YFRNFVDSCLQKIPQERPTSEELLKHRFVLRERPPT  288 (948)
T ss_pred             HH-------HHHH-HHhcCCCCCCCchhHH--HHHHHHHHHHhhCcccCCcHHHHhhcchhccCCCch
Confidence            22       2222 3333333333333322  357899999999999999999999999999876543

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=4.1e-24  Score=146.43  Aligned_cols=129  Identities=25%  Similarity=0.322  Sum_probs=95.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||...     
T Consensus       122 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~-----  196 (312)
T cd05585         122 ENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDE-----  196 (312)
T ss_pred             HHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCC-----
Confidence            489999999999999999875433333334456899999999998888889999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC---CHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP---TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp---s~~~~~~~~~~~~~  141 (160)
                        ................+  ...   ...+.+++.+||+.||++||   ++.+++.|+|+...
T Consensus       197 --~~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         197 --NVNEMYRKILQEPLRFP--DGF---DRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             --CHHHHHHHHHcCCCCCC--CcC---CHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence              11222222222222111  111   12357899999999999997   58999999999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=3.5e-24  Score=152.93  Aligned_cols=135  Identities=21%  Similarity=0.336  Sum_probs=101.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccc-----ccCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELA-----YTMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~-----~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      .|||+.-+|.++|.|||++...........+++|||+|||||++     ...+|..++||||+|+++.+|..+.||...+
T Consensus       159 GNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhel  238 (1187)
T KOG0579|consen  159 GNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHEL  238 (1187)
T ss_pred             cceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCcccc
Confidence            48999999999999999987544444445678999999999975     4667899999999999999999999997655


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                      +++.       .+...-+..+|.-.-+..+  ...+.+|+.+||.+||+.||++.+++.|+|+....+.
T Consensus       239 npMR-------VllKiaKSePPTLlqPS~W--s~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  239 NPMR-------VLLKIAKSEPPTLLQPSHW--SRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPSN  298 (1187)
T ss_pred             chHH-------HHHHHhhcCCCcccCcchh--hhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCcc
Confidence            4432       2233222222221112111  2246899999999999999999999999999865443

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.90  E-value=4.7e-24  Score=148.38  Aligned_cols=134  Identities=25%  Similarity=0.329  Sum_probs=93.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-----CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-----VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-----~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||+++.+...........|+..|++||.+...     ..+.++||||+||++|++++|+.||...
T Consensus       197 ~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  276 (353)
T PLN00034        197 SNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVG  276 (353)
T ss_pred             HHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence            48999999999999999998765433333345688999999987432     2345799999999999999999998621


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..     ......................   ...+.+|+.+||+.||++|||++++++|+|+....
T Consensus       277 ~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~  335 (353)
T PLN00034        277 RQ-----GDWASLMCAICMSQPPEAPATA---SREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQ  335 (353)
T ss_pred             CC-----ccHHHHHHHHhccCCCCCCCcc---CHHHHHHHHHHccCChhhCcCHHHHhcCcccccCC
Confidence            11     0111111111111111111111   22357899999999999999999999999999854

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.90  E-value=3e-24  Score=146.50  Aligned_cols=136  Identities=19%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+. .++.++|+||+||++|+|++|..||...... 
T Consensus       132 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~-  210 (303)
T cd07869         132 QNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGMKDI-  210 (303)
T ss_pred             HHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCccH-
Confidence            48999999999999999987544332233345578899999988654 4677899999999999999999999632210 


Q ss_pred             CCCCchhhHHHhhh--c-------------------CC---CCCCCHHHHH---HHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           80 SSSDPKIMLIDVLD--Q-------------------RL---PPPVDQKVIQ---DILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        80 ~~~~~~~~~~~~~~--~-------------------~~---~~~~~~~~~~---~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                           ...+.....  .                   ..   .+........   ....+.+|+.+||+.||++|||++++
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dp~~R~s~~~~  285 (303)
T cd07869         211 -----QDQLERIFLVLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLRQAWNKLSYVNHAEDLASKLLQCFPKNRLSAQAA  285 (303)
T ss_pred             -----HHHHHHHHHHhCCCChhhccchhhccccccccccccCCccHHHHhhccCCChHHHHHHHHHhccCchhccCHHHH
Confidence                 000000000  0                   00   0000000000   01235789999999999999999999


Q ss_pred             HHHHhhhccC
Q 040414          133 SQEFLITRKT  142 (160)
Q Consensus       133 ~~~~~~~~~~  142 (160)
                      +.|+|+....
T Consensus       286 l~h~~f~~~~  295 (303)
T cd07869         286 LSHEYFSDLP  295 (303)
T ss_pred             hcCcccccCC
Confidence            9999997643

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.90  E-value=3.7e-24  Score=147.62  Aligned_cols=135  Identities=21%  Similarity=0.379  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|..||........
T Consensus       125 ~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~  204 (329)
T cd05618         125 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN  204 (329)
T ss_pred             HHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCC
Confidence            48999999999999999987533222233345688999999999988888999999999999999999999963322111


Q ss_pred             C-CCchhhHHH-hhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC------HHHHHHHHhhhc
Q 040414           81 S-SDPKIMLID-VLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT------MQYVSQEFLITR  140 (160)
Q Consensus        81 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps------~~~~~~~~~~~~  140 (160)
                      . ......... ........+  ...   ...+.+++.+||+.||++|++      +++++.|+|+..
T Consensus       205 ~~~~~~~~~~~~i~~~~~~~p--~~~---~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~  267 (329)
T cd05618         205 PDQNTEDYLFQVILEKQIRIP--RSL---SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  267 (329)
T ss_pred             cccccHHHHHHHHhcCCCCCC--CCC---CHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence            1 111111112 222222111  111   123468999999999999998      589999999965

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.90  E-value=2.8e-24  Score=147.74  Aligned_cols=128  Identities=23%  Similarity=0.313  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|++++|..||....    
T Consensus       125 ~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~----  200 (320)
T cd05590         125 DNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAEN----  200 (320)
T ss_pred             HHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCC----
Confidence            4899999999999999998754333333334568999999999988888889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH------HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM------QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~------~~~~~~~~~~~  140 (160)
                         ...............+.  .   ....+.+++.+||+.||++|+++      ++++.|+|+..
T Consensus       201 ---~~~~~~~i~~~~~~~~~--~---~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~  258 (320)
T cd05590         201 ---EDDLFEAILNDEVVYPT--W---LSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKE  258 (320)
T ss_pred             ---HHHHHHHHhcCCCCCCC--C---CCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCC
Confidence               22222222222222111  1   11234789999999999999998      99999999975

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.90  E-value=7.4e-24  Score=145.78  Aligned_cols=128  Identities=23%  Similarity=0.311  Sum_probs=95.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       129 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~----  204 (323)
T cd05584         129 ENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAEN----  204 (323)
T ss_pred             HHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCC----
Confidence            4899999999999999998754333333334568899999999988878889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||+.||++||     ++++++.|+|+..
T Consensus       205 ---~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~  261 (323)
T cd05584         205 ---RKKTIDKILKGKLNLP--PYL---TPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRH  261 (323)
T ss_pred             ---HHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCC
Confidence               1222223322222211  111   12347899999999999999     8999999999865

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.90  E-value=1.2e-24  Score=151.43  Aligned_cols=132  Identities=22%  Similarity=0.302  Sum_probs=98.7

Q ss_pred             CceeecCCCceEEcccccceeccCC----------------------CCc-----c--------------------cccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD----------------------SSN-----R--------------------TLLA   33 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~----------------------~~~-----~--------------------~~~~   33 (160)
                      +|+|||..|++||+|||++..+...                      ...     .                    ...+
T Consensus       270 dNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StV  349 (550)
T KOG0605|consen  270 DNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTV  349 (550)
T ss_pred             hheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhccc
Confidence            5999999999999999998654210                      000     0                    1247


Q ss_pred             ccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 040414           34 GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST  113 (160)
Q Consensus        34 ~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (160)
                      |||-|+|||++.+..++..+|+||+|||+|||+.|.+||.       +..+.......+..+.....+...... ..+.+
T Consensus       350 GTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~-------s~tp~~T~rkI~nwr~~l~fP~~~~~s-~eA~D  421 (550)
T KOG0605|consen  350 GTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFC-------SETPQETYRKIVNWRETLKFPEEVDLS-DEAKD  421 (550)
T ss_pred             CCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCC-------CCCHHHHHHHHHHHhhhccCCCcCccc-HHHHH
Confidence            9999999999999999999999999999999999999997       444555555554444322222111111 33578


Q ss_pred             HHHhhhccCCCCCCC---HHHHHHHHhhhcc
Q 040414          114 ISFACLQSNPKSRPT---MQYVSQEFLITRK  141 (160)
Q Consensus       114 l~~~cl~~dp~~Rps---~~~~~~~~~~~~~  141 (160)
                      ||.+|+. ||++|.-   ++||..|+||++.
T Consensus       422 LI~rll~-d~~~RLG~~G~~EIK~HPfF~~v  451 (550)
T KOG0605|consen  422 LITRLLC-DPENRLGSKGAEEIKKHPFFKGV  451 (550)
T ss_pred             HHHHHhc-CHHHhcCcccHHHHhcCCccccC
Confidence            9999998 9999964   9999999999973

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.90  E-value=2.7e-24  Score=145.61  Aligned_cols=133  Identities=22%  Similarity=0.213  Sum_probs=94.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++....... ......++..|+|||++.+..++.++|+||+|+++|++++|..||....... 
T Consensus       131 ~Nill~~~~~~kl~Dfg~~~~~~~~~-~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~-  208 (285)
T cd05631         131 ENILLDDRGHIRISDLGLAVQIPEGE-TVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERV-  208 (285)
T ss_pred             HHEEECCCCCEEEeeCCCcEEcCCCC-eecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcch-
Confidence            48999999999999999988653322 2223468889999999998888999999999999999999999986322100 


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~~~  142 (160)
                         ........+.. ........   ....+.+|+.+||..||++||+     ++++++|+|+....
T Consensus       209 ---~~~~~~~~~~~-~~~~~~~~---~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~  268 (285)
T cd05631         209 ---KREEVDRRVKE-DQEEYSEK---FSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNIN  268 (285)
T ss_pred             ---hHHHHHHHhhc-ccccCCcc---CCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCC
Confidence               00111111111 11111111   1223578999999999999997     99999999998744

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00284 protein kinase; Provisional

Probab=99.90  E-value=5.4e-24  Score=152.92  Aligned_cols=140  Identities=19%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             CceeecCCC----------------ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHH
Q 040414            1 NNIILNSNL----------------EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLE   64 (160)
Q Consensus         1 ~nill~~~~----------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~   64 (160)
                      +|||++.++                .+||+|||.+....   .......+|+.|+|||++.+..++.++||||+||++|+
T Consensus       261 ~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~---~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~e  337 (467)
T PTZ00284        261 ENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDER---HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYE  337 (467)
T ss_pred             HHEEEecCCcccccccccccCCCCceEEECCCCccccCc---cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHH
Confidence            589998665                49999999875322   12234568999999999998889999999999999999


Q ss_pred             HHhcCCccccccccCC-------CCCchhhHH---------Hhhh--cCCCCCCCHH------------HHHHHHHHHHH
Q 040414           65 VLMGKHPRDLLSSLSS-------SSDPKIMLI---------DVLD--QRLPPPVDQK------------VIQDILLASTI  114 (160)
Q Consensus        65 l~~g~~~~~~~~~~~~-------~~~~~~~~~---------~~~~--~~~~~~~~~~------------~~~~~~~~~~l  114 (160)
                      |++|++||........       .......+.         ....  ....+.....            .......+.+|
T Consensus       338 lltG~~pf~~~~~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl  417 (467)
T PTZ00284        338 LYTGKLLYDTHDNLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDL  417 (467)
T ss_pred             HHhCCCCCCCCChHHHHHHHHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHH
Confidence            9999999963221100       000000000         0000  0000000000            00112346799


Q ss_pred             HHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414          115 SFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus       115 ~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      +.+||+.||++|||++++++|+|+.....
T Consensus       418 i~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  446 (467)
T PTZ00284        418 IYGLLHYDRQKRLNARQMTTHPYVLKYYP  446 (467)
T ss_pred             HHHhCCcChhhCCCHHHHhcCccccccCC
Confidence            99999999999999999999999987443

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=8.3e-24  Score=146.55  Aligned_cols=142  Identities=23%  Similarity=0.220  Sum_probs=99.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||||.+|.+||+|||+++++..... .....+-|.+|.+||.+.+. .|+...|+||+|||+.||+.|++.|+.-...
T Consensus       247 SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEv  326 (560)
T KOG0600|consen  247 SNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEV  326 (560)
T ss_pred             cceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHH
Confidence            699999999999999999997765443 24456679999999998876 5899999999999999999999998743222


Q ss_pred             CC-------CCCchhhHHHhhh------cCCCCCCC----HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SS-------SSDPKIMLIDVLD------QRLPPPVD----QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~-------~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ..       ...+....+...+      ..+..++.    ..+........+|+..+|..||++|.|+++++.+.||..+
T Consensus       327 eQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~  406 (560)
T KOG0600|consen  327 EQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRRLRETFKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTE  406 (560)
T ss_pred             HHHHHHHHHhCCCChhccccccCCcccccCCCCcccchHHHHhccCCHHHHHHHHHHhccCccccccHHHHhcCcccccC
Confidence            11       1122222222100      00111111    1111112356789999999999999999999999999544


Q ss_pred             C
Q 040414          142 T  142 (160)
Q Consensus       142 ~  142 (160)
                      .
T Consensus       407 p  407 (560)
T KOG0600|consen  407 P  407 (560)
T ss_pred             C
Confidence            3

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.90  E-value=5.9e-24  Score=146.17  Aligned_cols=128  Identities=24%  Similarity=0.341  Sum_probs=95.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       125 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~----  200 (321)
T cd05591         125 DNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADN----  200 (321)
T ss_pred             HHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCC----
Confidence            4899999999999999998754333333334568889999999988888899999999999999999999986222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-------CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-------TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-------s~~~~~~~~~~~~  140 (160)
                         ...............+.  ..   ...+.+++.+||+.||++|+       ++++++.|+|+..
T Consensus       201 ---~~~~~~~i~~~~~~~p~--~~---~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~  259 (321)
T cd05591         201 ---EDDLFESILHDDVLYPV--WL---SKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKE  259 (321)
T ss_pred             ---HHHHHHHHHcCCCCCCC--CC---CHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCC
Confidence               22222222222221111  11   12347899999999999999       9999999999865

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.90  E-value=1.1e-23  Score=145.40  Aligned_cols=138  Identities=24%  Similarity=0.370  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS-   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~-   79 (160)
                      +||+++.++.++|+|||+++.....  ......++..|+|||.+.+..++.++|+||+|+++|++++|+.||....... 
T Consensus       133 ~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~~~~  210 (331)
T cd06649         133 SNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPPPDAKEL  210 (331)
T ss_pred             hhEEEcCCCcEEEccCccccccccc--ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            5899999999999999998755332  2233468889999999988888899999999999999999999985211100 


Q ss_pred             -----C------C-----------------------CCchh---hHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccC
Q 040414           80 -----S------S-----------------------SDPKI---MLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSN  122 (160)
Q Consensus        80 -----~------~-----------------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~d  122 (160)
                           .      .                       ..+..   .....+.....+..+..  .....+.+|+.+||+.|
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~li~~~L~~~  288 (331)
T cd06649         211 EAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPNG--VFTPDFQEFVNKCLIKN  288 (331)
T ss_pred             HHHhcccccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCCc--cccHHHHHHHHHHccCC
Confidence                 0      0                       00000   00001111111111110  11224688999999999


Q ss_pred             CCCCCCHHHHHHHHhhhccC
Q 040414          123 PKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       123 p~~Rps~~~~~~~~~~~~~~  142 (160)
                      |++|||++++++|+|+....
T Consensus       289 P~~Rpt~~ell~h~~~~~~~  308 (331)
T cd06649         289 PAERADLKMLMNHTFIKRSE  308 (331)
T ss_pred             cccCCCHHHHhcChHHhhcc
Confidence            99999999999999998643

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.90  E-value=6.4e-24  Score=146.45  Aligned_cols=135  Identities=20%  Similarity=0.366  Sum_probs=95.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|++++|..||........
T Consensus       125 ~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~  204 (329)
T cd05588         125 DNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDN  204 (329)
T ss_pred             HHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCccccccccc
Confidence            48999999999999999987532222233345689999999999988888999999999999999999999964322111


Q ss_pred             C-CCchhhHHH-hhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC------HHHHHHHHhhhc
Q 040414           81 S-SDPKIMLID-VLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT------MQYVSQEFLITR  140 (160)
Q Consensus        81 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps------~~~~~~~~~~~~  140 (160)
                      . ........+ ........+.  ..   ...+.+++.+||+.||.+|++      +++++.|+|+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~p~--~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~  267 (329)
T cd05588         205 PDQNTEDYLFQVILEKQIRIPR--SL---SVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRN  267 (329)
T ss_pred             ccccchHHHHHHHHcCCCCCCC--CC---CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence            1 111111122 2222221111  11   123478999999999999987      799999999975

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.90  E-value=3.9e-24  Score=145.04  Aligned_cols=138  Identities=17%  Similarity=0.142  Sum_probs=89.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||.+.+ ..++.++|+||+|+++|+|++|.+||.......
T Consensus       132 ~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~~~~~  211 (288)
T cd07871         132 QNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGSTVKE  211 (288)
T ss_pred             HHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            4899999999999999998765433333334557889999998865 446888999999999999999999986322100


Q ss_pred             C-------CCCchhhHHHhh------hc-CCCC----CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLIDVL------DQ-RLPP----PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~------~~-~~~~----~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+.......+      .. ..+.    +...........+.+|+.+||+.||.+|||++++++|+||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         212 ELHLIFRLLGTPTEETWPGITSNEEFRSYLFPQYRAQPLINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             HHHHHHHHhCCCChHHhhccccchhhhccccCccCCCchHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            0       000000000000      00 0000    0000000112345789999999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.90  E-value=6.5e-24  Score=146.41  Aligned_cols=125  Identities=24%  Similarity=0.254  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++......   ....|++.|+|||++.+..++.++|+||+||++|+|++|..||....    
T Consensus       147 ~NIll~~~~~~kl~Dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~----  219 (329)
T PTZ00263        147 ENLLLDNKGHVKVTDFGFAKKVPDRT---FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDT----  219 (329)
T ss_pred             HHEEECCCCCEEEeeccCceEcCCCc---ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCC----
Confidence            48999999999999999998654322   23568889999999988888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                         ...............+..  .   ...+.+++.+||+.||.+|++     +++++.|+|+..
T Consensus       220 ---~~~~~~~i~~~~~~~p~~--~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~  276 (329)
T PTZ00263        220 ---PFRIYEKILAGRLKFPNW--F---DGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHG  276 (329)
T ss_pred             ---HHHHHHHHhcCCcCCCCC--C---CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCC
Confidence               122222222222222211  1   123478999999999999987     799999999976

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.90  E-value=8.3e-24  Score=145.81  Aligned_cols=128  Identities=20%  Similarity=0.267  Sum_probs=93.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|++++|..||....    
T Consensus       124 ~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~----  199 (328)
T cd05593         124 ENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----  199 (328)
T ss_pred             HHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCC----
Confidence            4899999999999999998754332223334568899999999988888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............  +...   ...+.+++.+||..||++|+     +++++++|+|+..
T Consensus       200 ---~~~~~~~~~~~~~~~--p~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~  256 (328)
T cd05593         200 ---HEKLFELILMEDIKF--PRTL---SADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTG  256 (328)
T ss_pred             ---HHHHHHHhccCCccC--CCCC---CHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence               111111111111111  1111   12347899999999999997     8999999999875

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.90  E-value=7.7e-24  Score=147.61  Aligned_cols=139  Identities=22%  Similarity=0.238  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++..... .......+++.|+|||.+.+..++.++|+||+|+++|+|++|..||........
T Consensus       152 ~NIl~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~~~~~~  230 (359)
T cd07876         152 SNIVVKSDCTLKILDFGLARTACTN-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQ  230 (359)
T ss_pred             HHEEECCCCCEEEecCCCccccccC-ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            4899999999999999998754322 222334678899999999888888999999999999999999999963321100


Q ss_pred             -------CCCchhh--------HHHhhhcCCCCC-CC-H-------------HHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 -------SSDPKIM--------LIDVLDQRLPPP-VD-Q-------------KVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 -------~~~~~~~--------~~~~~~~~~~~~-~~-~-------------~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                             ...+...        ...........+ .. .             ........+.+|+.+||+.||++|||++
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~  310 (359)
T cd07876         231 WNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVD  310 (359)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhccccccccccccccccchhHHHHHHHHhccCcccCCCHH
Confidence                   0000000        000000000000 00 0             0000112357899999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      +++.|+|+..
T Consensus       311 e~l~hp~~~~  320 (359)
T cd07876         311 EALRHPYITV  320 (359)
T ss_pred             HHhcCchhhh
Confidence            9999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.90  E-value=6.9e-24  Score=145.55  Aligned_cols=129  Identities=21%  Similarity=0.267  Sum_probs=93.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|..||....    
T Consensus       125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~----  200 (316)
T cd05620         125 DNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDD----  200 (316)
T ss_pred             HHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998753322223334568899999999998888999999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-HHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-QYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-~~~~~~~~~~~~  141 (160)
                         ...............+  ..   ....+.+++.+||+.||++|+++ ++++.|+|+...
T Consensus       201 ---~~~~~~~~~~~~~~~~--~~---~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         201 ---EDELFESIRVDTPHYP--RW---ITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             ---HHHHHHHHHhCCCCCC--CC---CCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence               1111221111111111  11   11234789999999999999997 689999999763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.90  E-value=8.8e-24  Score=143.14  Aligned_cols=130  Identities=25%  Similarity=0.244  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.++...... ......++..|+|||++.+..++.++|+||+|++++++++|.++|.....   
T Consensus       137 ~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~---  212 (288)
T cd07863         137 ENILVTSGGQVKLADFGLARIYSCQM-ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE---  212 (288)
T ss_pred             HHEEECCCCCEEECccCccccccCcc-cCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCH---
Confidence            48999999999999999987654322 22234578889999999888888999999999999999999999852211   


Q ss_pred             CCCchhhHHHhhh----------------------cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLD----------------------QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          .........                      .....+...........+.+++.+||+.||++|||+++++.|+||
T Consensus       213 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         213 ----ADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             ----HHHHHHHHHHhCCCChhhCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                101100000                      000000000001112345789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=2.7e-24  Score=154.70  Aligned_cols=132  Identities=24%  Similarity=0.447  Sum_probs=103.2

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++ -.|.+||+|||.++.+-.-...+.++.||.-|||||++..++  |+.++|||||||++.||.+|+|||-....
T Consensus       704 DNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~Elgs  783 (1226)
T KOG4279|consen  704 DNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGS  783 (1226)
T ss_pred             CcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCC
Confidence            488886 578999999999998776667777889999999999997764  78899999999999999999999974432


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            +....-++.-....++.+.....   .++.|+.+|..+||.+||++.+++..+|....
T Consensus       784 ------pqAAMFkVGmyKvHP~iPeelsa---eak~FilrcFepd~~~R~sA~~LL~DpFlq~~  838 (1226)
T KOG4279|consen  784 ------PQAAMFKVGMYKVHPPIPEELSA---EAKNFILRCFEPDPCDRPSAKDLLQDPFLQHN  838 (1226)
T ss_pred             ------hhHhhhhhcceecCCCCcHHHHH---HHHHHHHHHcCCCcccCccHHHhccCcccccC
Confidence                  11111222222334444444333   35789999999999999999999999999875

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.90  E-value=1.6e-23  Score=144.12  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       130 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~----  205 (324)
T cd05589         130 DNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDD----  205 (324)
T ss_pred             HHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998754333333344568899999999988888889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||+.||++||     ++.+++.|+|+..
T Consensus       206 ---~~~~~~~i~~~~~~~p--~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~  262 (324)
T cd05589         206 ---EEEVFDSIVNDEVRYP--RFL---SREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRD  262 (324)
T ss_pred             ---HHHHHHHHHhCCCCCC--CCC---CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCC
Confidence               1222222222222111  111   12246799999999999999     7999999999875

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.89  E-value=8.4e-24  Score=143.90  Aligned_cols=142  Identities=20%  Similarity=0.286  Sum_probs=99.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+.+...+.++|+||+|+++|++++|..||.....   
T Consensus       145 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~---  221 (296)
T cd06654         145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP---  221 (296)
T ss_pred             HHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH---
Confidence            48999999999999999887544332222334577889999999887788899999999999999999999863221   


Q ss_pred             CCCchhhHHHhh-hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccccccccc
Q 040414           81 SSDPKIMLIDVL-DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQD  152 (160)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~~~~~  152 (160)
                          ........ ......+....   ....+.+++.+||..+|+.|||++++++|+|+....+.....++-+
T Consensus       222 ----~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~~~~~~~~~~~  287 (296)
T cd06654         222 ----LRALYLIATNGTPELQNPEK---LSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIA  287 (296)
T ss_pred             ----HHhHHHHhcCCCCCCCCccc---cCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhccCCccccHHHHH
Confidence                11111111 11111111111   2223578999999999999999999999999988666554444333

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.89  E-value=6.8e-24  Score=143.31  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=95.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+.+..++.++|+||+|+++|++++|..||....... 
T Consensus       126 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~-  204 (280)
T cd05608         126 ENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV-  204 (280)
T ss_pred             HHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch-
Confidence            4899999999999999998765544333334567889999999998888899999999999999999999986322110 


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                        .............  ...+.   .....+.+++.+||+.||++||     +++++++|+|+...
T Consensus       205 --~~~~~~~~~~~~~--~~~~~---~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~  263 (280)
T cd05608         205 --ENKELKQRILNDS--VTYPD---KFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDL  263 (280)
T ss_pred             --hHHHHHHhhcccC--CCCcc---cCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcC
Confidence              0011111111111  11111   1222357899999999999999     89999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.4e-23  Score=140.14  Aligned_cols=133  Identities=26%  Similarity=0.422  Sum_probs=97.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+..++.++|+||+|+++|++++|.+||....    
T Consensus       127 ~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~----  202 (274)
T cd06609         127 ANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLH----  202 (274)
T ss_pred             HHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCc----
Confidence            4899999999999999999876543322333457778999999988888899999999999999999999986322    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                         +.... ..+.....+......  ....+.+++.+||..+|++|||+++++.|+|+.+...
T Consensus       203 ---~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~~~  259 (274)
T cd06609         203 ---PMRVL-FLIPKNNPPSLEGNK--FSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKAKK  259 (274)
T ss_pred             ---hHHHH-HHhhhcCCCCCcccc--cCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCCCc
Confidence               11111 111122222211110  1223578999999999999999999999999988553

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=7.1e-24  Score=143.94  Aligned_cols=125  Identities=24%  Similarity=0.288  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.....   .....|++.|+|||.+.+..++.++|+||+|+++|+|++|..||...     
T Consensus       130 ~NIli~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~-----  201 (291)
T cd05612         130 ENILLDKEGHIKLTDFGFAKKLRDR---TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD-----  201 (291)
T ss_pred             HHeEECCCCCEEEEecCcchhccCC---cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----
Confidence            4899999999999999998765432   22346888999999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                        ................+.  ..   ...+.+++.+||+.||.+|++     ++++++|+|+..
T Consensus       202 --~~~~~~~~i~~~~~~~~~--~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~  259 (291)
T cd05612         202 --NPFGIYEKILAGKLEFPR--HL---DLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKS  259 (291)
T ss_pred             --CHHHHHHHHHhCCcCCCc--cC---CHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccC
Confidence              122222333322222211  11   223578999999999999995     999999999975

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.89  E-value=1.3e-23  Score=141.24  Aligned_cols=128  Identities=24%  Similarity=0.327  Sum_probs=89.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||++..............++..|++||++..     ..++.++|+||+|+++|++++|..||...
T Consensus       140 ~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~  219 (272)
T cd06637         140 QNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  219 (272)
T ss_pred             HHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            4899999999999999998765433223334567888999998863     34677899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..       ...................   ....+.+++.+||..+|.+|||+++++.|+|+
T Consensus       220 ~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         220 HP-------MRALFLIPRNPAPRLKSKK---WSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             CH-------HHHHHHHhcCCCCCCCCCC---cCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence            21       1111111111111110111   11235789999999999999999999999986

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.89  E-value=2.9e-23  Score=142.47  Aligned_cols=138  Identities=20%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             Cceee----cCCCceEEcccccceeccCCCC---ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIIL----NSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill----~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +|||+    +.++.+||+|||+++.......   ......+++.|+|||++.+. .++.++|+||+||++++|++|.+||
T Consensus       137 ~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f  216 (317)
T cd07868         137 ANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             HHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCc
Confidence            48999    4567899999999986543221   12235678899999998764 4688899999999999999999998


Q ss_pred             ccccccCCCCC--chhhHHHhhh--------------cCC-------------CCCCC-HHHH-----HHHHHHHHHHHh
Q 040414           73 DLLSSLSSSSD--PKIMLIDVLD--------------QRL-------------PPPVD-QKVI-----QDILLASTISFA  117 (160)
Q Consensus        73 ~~~~~~~~~~~--~~~~~~~~~~--------------~~~-------------~~~~~-~~~~-----~~~~~~~~l~~~  117 (160)
                      ...........  ..........              ...             ..... ....     .....+.+++.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~  296 (317)
T cd07868         217 HCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQK  296 (317)
T ss_pred             cCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchhhhhhhhhccccCcccccchHHhcCCCCChHHHHHHHH
Confidence            53221100000  0000000000              000             00000 0000     001135689999


Q ss_pred             hhccCCCCCCCHHHHHHHHhh
Q 040414          118 CLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus       118 cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ||+.||++|||++++++|+||
T Consensus       297 mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         297 LLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HhccCcccCCCHHHHhcCCCC
Confidence            999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.89  E-value=1.4e-23  Score=151.37  Aligned_cols=129  Identities=28%  Similarity=0.343  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++......  .......|++.|+|||.+.+..++.++|+||+|+++|++++|..||...   
T Consensus       172 ~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~---  248 (496)
T PTZ00283        172 ANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGE---  248 (496)
T ss_pred             HHEEEeCCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC---
Confidence            49999999999999999998654321  1223456899999999999888899999999999999999999998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          .............. .+.+....   ..+.+++.+||+.||++||++.+++.|+++..
T Consensus       249 ----~~~~~~~~~~~~~~-~~~~~~~~---~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~  302 (496)
T PTZ00283        249 ----NMEEVMHKTLAGRY-DPLPPSIS---PEMQEIVTALLSSDPKRRPSSSKLLNMPICKL  302 (496)
T ss_pred             ----CHHHHHHHHhcCCC-CCCCCCCC---HHHHHHHHHHcccChhhCcCHHHHHhCHHHHH
Confidence                11222222222211 11111111   23578999999999999999999999998764

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.1e-23  Score=145.54  Aligned_cols=131  Identities=16%  Similarity=0.193  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++....   ......|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       130 ~Nil~~~~~~~kL~Dfg~a~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~----  202 (333)
T cd05600         130 ENFLIDASGHIKLTDFGLSKGIVT---YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGST----  202 (333)
T ss_pred             HHEEECCCCCEEEEeCcCCccccc---ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCC----
Confidence            489999999999999999875433   2233568899999999988888999999999999999999999986321    


Q ss_pred             CCCchhhHHHhhh--cCCCCCCCH-HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLD--QRLPPPVDQ-KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         ..........  .....+... ........+.+++.+||..+|++||++++++.|+|+...
T Consensus       203 ---~~~~~~~i~~~~~~~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         203 ---PNETWENLKYWKETLQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             ---HHHHHHHHHhccccccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence               1111111111  111111100 001122335789999999999999999999999999863

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.89  E-value=3.6e-23  Score=143.46  Aligned_cols=137  Identities=22%  Similarity=0.245  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.....   .....+++.|+|||++.+ ..++.++|+||+|+++|+|++|..||.......
T Consensus       147 ~Nil~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  223 (343)
T cd07878         147 SNVAVNEDCELRILDFGLARQADDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYID  223 (343)
T ss_pred             hhEEECCCCCEEEcCCccceecCCC---cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHH
Confidence            5999999999999999999865432   223457889999999876 456788999999999999999999986322100


Q ss_pred             C--------CCCchhhH--------HHhhhcCCCCCCCHHHH-----HHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S--------SSDPKIML--------IDVLDQRLPPPVDQKVI-----QDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~--------~~~~~~~~--------~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .        ........        ...... .+ ..+....     .....+.+|+.+||+.||++|||+++++.|+|+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~  301 (343)
T cd07878         224 QLKRIMEVVGTPSPEVLKKISSEHARKYIQS-LP-HMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYF  301 (343)
T ss_pred             HHHHHHHHhCCCCHHHHHhcchhhHHHHhhc-cc-cccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcch
Confidence            0        00000000        000000 00 0000000     011235789999999999999999999999999


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ....
T Consensus       302 ~~~~  305 (343)
T cd07878         302 SQYH  305 (343)
T ss_pred             hccC
Confidence            8744

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.89  E-value=1.9e-23  Score=143.40  Aligned_cols=128  Identities=23%  Similarity=0.327  Sum_probs=93.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       125 ~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~----  200 (316)
T cd05592         125 DNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGED----  200 (316)
T ss_pred             HHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999999765433333344568999999999988888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-~~~~~~~~~~~  140 (160)
                         ..............  .+...   ...+.+++.+||+.||++||++ ++++.|+|+..
T Consensus       201 ---~~~~~~~i~~~~~~--~~~~~---~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~  253 (316)
T cd05592         201 ---EDELFDSILNDRPH--FPRWI---SKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRG  253 (316)
T ss_pred             ---HHHHHHHHHcCCCC--CCCCC---CHHHHHHHHHHccCCHHHcCCChHHHHcCcccCC
Confidence               12222222221111  11111   1224689999999999999986 58889999875

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.89  E-value=4.4e-24  Score=147.00  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       125 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~----  200 (325)
T cd05594         125 ENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----  200 (325)
T ss_pred             CeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCC----
Confidence            5999999999999999998754333223334568899999999988888899999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||+.||++|+     ++.++++|+|+..
T Consensus       201 ---~~~~~~~i~~~~~~~p--~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~  257 (325)
T cd05594         201 ---HEKLFELILMEEIRFP--RTL---SPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAG  257 (325)
T ss_pred             ---HHHHHHHHhcCCCCCC--CCC---CHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCC
Confidence               1111111111111111  111   12346899999999999996     9999999999885

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.8e-23  Score=138.83  Aligned_cols=130  Identities=28%  Similarity=0.400  Sum_probs=92.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC---CCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~---~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+...   .++.++|+||+|+++++|++|.+||.... 
T Consensus       130 ~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~-  208 (262)
T cd06613         130 ANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLH-  208 (262)
T ss_pred             hhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCC-
Confidence            58999999999999999987654332222334567789999998766   67788999999999999999999986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ...............+...........+.+++.+||..+|..|||+++++.|.|
T Consensus       209 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         209 ------PMRALFLISKSNFPPPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             ------HHHHHHHHHhccCCCccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence                  112222222221121111122233345688999999999999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.89  E-value=1.6e-23  Score=144.22  Aligned_cols=128  Identities=23%  Similarity=0.360  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|..||....    
T Consensus       130 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~----  205 (324)
T cd05587         130 DNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGED----  205 (324)
T ss_pred             HHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC----
Confidence            5899999999999999998753322223334568899999999998888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-----~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||+.||.+|++.     +++++|+|+..
T Consensus       206 ---~~~~~~~i~~~~~~~~--~~~---~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~  262 (324)
T cd05587         206 ---EDELFQSIMEHNVSYP--KSL---SKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRR  262 (324)
T ss_pred             ---HHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCC
Confidence               1222222222222111  111   1234789999999999999976     89999999875

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.89  E-value=1.5e-23  Score=144.27  Aligned_cols=128  Identities=23%  Similarity=0.331  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+||++|+|++|..||...     
T Consensus       130 ~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~-----  204 (323)
T cd05616         130 DNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE-----  204 (323)
T ss_pred             HHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC-----
Confidence            489999999999999999875433322333456889999999999888899999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                        ................+.  .   ....+.+++.+||+.||++|++     .+++++|+|+..
T Consensus       205 --~~~~~~~~i~~~~~~~p~--~---~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~  262 (323)
T cd05616         205 --DEDELFQSIMEHNVAYPK--S---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRY  262 (323)
T ss_pred             --CHHHHHHHHHhCCCCCCC--c---CCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCC
Confidence              122222222222222111  1   1123478999999999999997     589999998864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.89  E-value=1.6e-23  Score=144.10  Aligned_cols=128  Identities=21%  Similarity=0.298  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|++++|..||....    
T Consensus       124 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~----  199 (323)
T cd05595         124 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD----  199 (323)
T ss_pred             HHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998753332222334568899999999988888899999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||..||++|+     ++.++++|+|+..
T Consensus       200 ---~~~~~~~~~~~~~~~p--~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~  256 (323)
T cd05595         200 ---HERLFELILMEEIRFP--RTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  256 (323)
T ss_pred             ---HHHHHHHHhcCCCCCC--CCC---CHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCC
Confidence               1122222222222111  111   12347899999999999998     8999999999976

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.89  E-value=2.7e-23  Score=143.26  Aligned_cols=135  Identities=19%  Similarity=0.353  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|..||........
T Consensus       125 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~  204 (327)
T cd05617         125 DNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPD  204 (327)
T ss_pred             HHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcc
Confidence            48999999999999999987533322333445689999999999888888999999999999999999999963322111


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC------HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT------MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps------~~~~~~~~~~~~  140 (160)
                      ..................+  ...   ...+.+++.+||+.||++|++      +++++.|+|+..
T Consensus       205 ~~~~~~~~~~~~~~~~~~p--~~~---~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~  265 (327)
T cd05617         205 MNTEDYLFQVILEKPIRIP--RFL---SVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRS  265 (327)
T ss_pred             cccHHHHHHHHHhCCCCCC--CCC---CHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCC
Confidence            1111111122222211111  111   122478999999999999998      579999999876

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.89  E-value=2.2e-23  Score=145.54  Aligned_cols=139  Identities=20%  Similarity=0.157  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++...... ......++..|+|||++.+..++.++|+||+||++|+|++|..||........
T Consensus       155 ~NIll~~~~~~kL~DfG~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~  233 (364)
T cd07875         155 SNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQ  233 (364)
T ss_pred             HHEEECCCCcEEEEeCCCccccCCCC-cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCCCHHHH
Confidence            48999999999999999998654322 22335678899999999888888999999999999999999999863221100


Q ss_pred             -------CCCchhhH--------HHhhhcCCCC-CC--------------CHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 -------SSDPKIML--------IDVLDQRLPP-PV--------------DQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 -------~~~~~~~~--------~~~~~~~~~~-~~--------------~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                             ...+....        .......... ..              ..........+.+|+.+||+.||.+|||++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~  313 (364)
T cd07875         234 WNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVD  313 (364)
T ss_pred             HHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhCccccccccccccccccHHHHHHHHHhcCcCcccCCCHH
Confidence                   00000000        0000000000 00              000000112457899999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       314 e~L~hp~~~~  323 (364)
T cd07875         314 EALQHPYINV  323 (364)
T ss_pred             HHhcCccccc
Confidence            9999999964

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=6.5e-24  Score=148.63  Aligned_cols=128  Identities=23%  Similarity=0.341  Sum_probs=90.4

Q ss_pred             ceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccC-----------CCCCCcCeeehHHHHHHHHhc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTM-----------VMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~-----------~~~~~~di~s~G~~~~~l~~g   68 (160)
                      |+|+- .|.+||+|||++..+..+...  ....+||+.||+||++...           +++.++||||+||++|+|+.|
T Consensus       490 NFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYg  568 (677)
T KOG0596|consen  490 NFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYG  568 (677)
T ss_pred             cEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhc
Confidence            55555 478999999999987655432  2457899999999987422           245689999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ++||......      -..+.....+.-  +.+.-....    .+.+++..||+.||++|||+.++|+|+|...
T Consensus       569 ktPf~~~~n~------~aKl~aI~~P~~~Iefp~~~~~~----~li~~mK~CL~rdPkkR~si~eLLqhpFl~~  632 (677)
T KOG0596|consen  569 KTPFGQIINQ------IAKLHAITDPNHEIEFPDIPEND----ELIDVMKCCLARDPKKRWSIPELLQHPFLQI  632 (677)
T ss_pred             CCchHHHHHH------HHHHHhhcCCCccccccCCCCch----HHHHHHHHHHhcCcccCCCcHHHhcCccccc
Confidence            9999632211      111222222211  211111111    1578999999999999999999999999886

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.89  E-value=1.6e-23  Score=144.10  Aligned_cols=128  Identities=23%  Similarity=0.302  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||...     
T Consensus       125 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~-----  199 (323)
T cd05575         125 ENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----  199 (323)
T ss_pred             HHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCC-----
Confidence            489999999999999999875433323333456888999999998888889999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~~~~~  140 (160)
                        ................+  ...   ...+.+++.+||+.||.+||++    ++++.|+|+..
T Consensus       200 --~~~~~~~~i~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~  256 (323)
T cd05575         200 --DTAEMYDNILNKPLRLK--PNI---SVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSS  256 (323)
T ss_pred             --CHHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCC
Confidence              11222222222221111  111   2235789999999999999987    69999999865

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.89  E-value=2e-23  Score=141.09  Aligned_cols=135  Identities=21%  Similarity=0.253  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||++..............++..|++||.+.     ...++.++|+||+|+++|++++|.+||...
T Consensus       132 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~  211 (282)
T cd06643         132 GNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHEL  211 (282)
T ss_pred             ccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCcccc
Confidence            589999999999999999876543322233355788899999874     334567899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                      .       ............. ....+..   ....+.+++.+||+.||++||++++++.|+|+.......
T Consensus       212 ~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  272 (282)
T cd06643         212 N-------PMRVLLKIAKSEPPTLAQPSR---WSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVNSNKP  272 (282)
T ss_pred             C-------HHHHHHHHhhcCCCCCCCccc---cCHHHHHHHHHHccCChhhCcCHHHHhcCCCEeccCCCC
Confidence            2       1112222211111 1111111   122357899999999999999999999999998765443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.89  E-value=1.6e-23  Score=143.85  Aligned_cols=129  Identities=23%  Similarity=0.315  Sum_probs=94.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||+++.............+++.|+|||.+.+..++.++|+||+||++|++++|..||....    
T Consensus       125 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~----  200 (318)
T cd05570         125 DNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDD----  200 (318)
T ss_pred             HHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCC----
Confidence            4899999999999999998753322222333568889999999988888899999999999999999999986222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-----HHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-----QYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-----~~~~~~~~~~~~  141 (160)
                         ...............+  ...   ...+.+++.+||+.||++||++     .+++.|+|+...
T Consensus       201 ---~~~~~~~i~~~~~~~~--~~~---~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~  258 (318)
T cd05570         201 ---EDELFQSILEDEVRYP--RWL---SKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREI  258 (318)
T ss_pred             ---HHHHHHHHHcCCCCCC--CcC---CHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence               1111222222221111  111   1235789999999999999999     999999999763

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.89  E-value=2.1e-23  Score=143.19  Aligned_cols=129  Identities=22%  Similarity=0.283  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|++++|..||....    
T Consensus       125 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~----  200 (316)
T cd05619         125 DNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHD----  200 (316)
T ss_pred             HHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998753322222334568889999999988888999999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH-HHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ-YVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~-~~~~~~~~~~~  141 (160)
                         ..............  .+..   ....+.+++.+||+.||++|+++. +++.|+|+...
T Consensus       201 ---~~~~~~~i~~~~~~--~~~~---~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         201 ---EEELFQSIRMDNPC--YPRW---LTREAKDILVKLFVREPERRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             ---HHHHHHHHHhCCCC--CCcc---CCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCC
Confidence               11222222111111  1111   112347899999999999999996 89999998763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=4.1e-23  Score=138.14  Aligned_cols=128  Identities=23%  Similarity=0.330  Sum_probs=91.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.........   ....++..|+|||.+.+...+.++|+||+|+++|++++|+.||.... 
T Consensus       133 ~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-  211 (263)
T cd06625         133 ANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFE-  211 (263)
T ss_pred             HHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccc-
Confidence            48999999999999999987653221111   22346778999999988888889999999999999999999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            .................+....   ..+.+++.+||..+|++|||+++++.|+|+
T Consensus       212 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         212 ------AMAAIFKIATQPTNPQLPSHVS---PDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             ------hHHHHHHHhccCCCCCCCccCC---HHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence                  1122222222222222222222   234789999999999999999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.89  E-value=2.1e-23  Score=145.19  Aligned_cols=139  Identities=22%  Similarity=0.200  Sum_probs=92.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++..... .......++..|+|||.+.+..++.++|+||+|+++|+|++|..||........
T Consensus       148 ~Nill~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  226 (355)
T cd07874         148 SNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ  226 (355)
T ss_pred             HHEEECCCCCEEEeeCcccccCCCc-cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            4899999999999999999864432 222335678899999999888888999999999999999999999863221100


Q ss_pred             C-------CCchh--------hHHHhhhcCCC-------C-------CCC-HHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 S-------SDPKI--------MLIDVLDQRLP-------P-------PVD-QKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 ~-------~~~~~--------~~~~~~~~~~~-------~-------~~~-~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      .       ..+..        ...........       .       +.. .........+.+++.+||..||++|||++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~  306 (355)
T cd07874         227 WNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD  306 (355)
T ss_pred             HHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHHHHHhcCCchhcCCHH
Confidence            0       00000        00000000000       0       000 00000122457899999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       307 ell~hp~~~~  316 (355)
T cd07874         307 EALQHPYINV  316 (355)
T ss_pred             HHhcCcchhc
Confidence            9999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.5e-23  Score=145.66  Aligned_cols=129  Identities=22%  Similarity=0.308  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCC-----------------------------CccccccccccccCCcccccCCCCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-----------------------------SNRTLLAGTYGYIAPELAYTMVMTE   51 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-----------------------------~~~~~~~~~~~~~~Pe~~~~~~~~~   51 (160)
                      +||+++.++.+||+|||++.......                             .......|++.|+|||.+.+..++.
T Consensus       130 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  209 (350)
T cd05573         130 DNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGL  209 (350)
T ss_pred             HHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCC
Confidence            48999999999999999987654332                             1122346888999999999888899


Q ss_pred             CcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhh--cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-
Q 040414           52 KCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-  128 (160)
Q Consensus        52 ~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-  128 (160)
                      ++|+||+||++|+|++|..||....       ..........  .....+....   ....+.+++.+||. ||.+|++ 
T Consensus       210 ~~DiwSlG~il~ell~g~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~~---~~~~~~~li~~ll~-dp~~R~~s  278 (350)
T cd05573         210 ECDWWSLGVILYEMLYGFPPFYSDT-------LQETYNKIINWKESLRFPPDPP---VSPEAIDLICRLLC-DPEDRLGS  278 (350)
T ss_pred             ceeeEecchhhhhhccCCCCCCCCC-------HHHHHHHHhccCCcccCCCCCC---CCHHHHHHHHHHcc-ChhhcCCC
Confidence            9999999999999999999986322       1222222222  1111111111   12235778899997 9999999 


Q ss_pred             HHHHHHHHhhhc
Q 040414          129 MQYVSQEFLITR  140 (160)
Q Consensus       129 ~~~~~~~~~~~~  140 (160)
                      +++++.|+|+..
T Consensus       279 ~~~ll~hp~~~~  290 (350)
T cd05573         279 FEEIKSHPFFKG  290 (350)
T ss_pred             HHHHhcCCCcCC
Confidence            999999999975

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.89  E-value=5.8e-23  Score=136.86  Aligned_cols=127  Identities=27%  Similarity=0.422  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.++.............+++.|++||++.+..++.++|+||+|++++++++|..||....    
T Consensus       130 ~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  205 (256)
T cd08529         130 LNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANN----  205 (256)
T ss_pred             ceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCC----
Confidence            5899999999999999998866544333334457788999999988888889999999999999999999986222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         .......... ...++...   .....+.+++.+||+.+|++||++.++++|+|.
T Consensus       206 ---~~~~~~~~~~-~~~~~~~~---~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         206 ---QGALILKIIR-GVFPPVSQ---MYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             ---HHHHHHHHHc-CCCCCCcc---ccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence               1222222222 22222221   122335789999999999999999999999874

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.89  E-value=3.1e-23  Score=148.00  Aligned_cols=140  Identities=20%  Similarity=0.201  Sum_probs=92.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.++|+|||+++.......  ......||..|++||++.+..++.++|+||+||++|++++|..++......
T Consensus       289 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~~~~~  368 (461)
T PHA03211        289 ENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFSASRG  368 (461)
T ss_pred             HHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCcccCCcc
Confidence            599999999999999999986543221  122356899999999998888889999999999999999887654322111


Q ss_pred             CCCCCchhhHHHhhhcC------CC------------------------CCCCHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 040414           79 SSSSDPKIMLIDVLDQR------LP------------------------PPVDQKVIQDILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~------~~------------------------~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      .........+.+.+...      .+                        .+...........+.+|+.+||+.||.+|||
T Consensus       369 ~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~DP~~RPs  448 (461)
T PHA03211        369 DERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPAYTRPAWTRYYKLDLDVEYLVCRALTFDGARRPS  448 (461)
T ss_pred             cccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCccCCcchhhhccccchHHHHHHHHcccChhhCcC
Confidence            10010111111111100      00                        0000001111224678999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 040414          129 MQYVSQEFLITR  140 (160)
Q Consensus       129 ~~~~~~~~~~~~  140 (160)
                      ++++++|+||..
T Consensus       449 a~elL~hp~f~~  460 (461)
T PHA03211        449 AAELLRLPLFQS  460 (461)
T ss_pred             HHHHhhCcccCC
Confidence            999999999964

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.89  E-value=1.7e-23  Score=144.24  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=99.0

Q ss_pred             CceeecCCCceEEcccccceeccCC-----CCccccccccccccCCcccccCC----CCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD-----SSNRTLLAGTYGYIAPELAYTMV----MTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~-----~~~~~~~~~~~~~~~Pe~~~~~~----~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +|+|++++|++||+|||++......     ........|||.|+|||.+.++.    .+.+.||||+||++|-++.|+.|
T Consensus       239 sNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~P  318 (576)
T KOG0585|consen  239 SNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLP  318 (576)
T ss_pred             hheEEcCCCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCC
Confidence            6999999999999999999865221     11122367999999999998743    25678999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      |.       .........+.+...+..+..   ......+++++.++|.+||+.|.+..+|..|+|.....
T Consensus       319 F~-------~~~~~~l~~KIvn~pL~fP~~---pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~g  379 (576)
T KOG0585|consen  319 FF-------DDFELELFDKIVNDPLEFPEN---PEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRDG  379 (576)
T ss_pred             cc-------cchHHHHHHHHhcCcccCCCc---ccccHHHHHHHHHHhhcChhheeehhhheecceeccCC
Confidence            97       222333344444443333322   23344568999999999999999999999999999853

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.89  E-value=2.9e-23  Score=143.71  Aligned_cols=125  Identities=22%  Similarity=0.291  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.....   .....|++.|+|||++.+..++.++|+||+||++|+|++|.+||...     
T Consensus       160 ~NILl~~~~~ikL~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~-----  231 (340)
T PTZ00426        160 ENLLLDKDGFIKMTDFGFAKVVDTR---TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN-----  231 (340)
T ss_pred             HHEEECCCCCEEEecCCCCeecCCC---cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC-----
Confidence            4899999999999999999865432   22356889999999998887888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                        ................+.  ..   ...+.+++.+||+.||++|+     ++++++.|+|+..
T Consensus       232 --~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~  289 (340)
T PTZ00426        232 --EPLLIYQKILEGIIYFPK--FL---DNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGN  289 (340)
T ss_pred             --CHHHHHHHHhcCCCCCCC--CC---CHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCC
Confidence              122222233222221111  11   11246899999999999995     8999999999986

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.89  E-value=1.8e-23  Score=141.66  Aligned_cols=132  Identities=24%  Similarity=0.279  Sum_probs=92.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC---CCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~---~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++....... .....++..|++||.+.+.   .++.++|+||+|++++++++|..||.... 
T Consensus       137 ~Nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-  214 (288)
T cd06616         137 SNILLDRNGNIKLCDFGISGQLVDSIA-KTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWN-  214 (288)
T ss_pred             HHEEEccCCcEEEeecchhHHhccCCc-cccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcc-
Confidence            489999999999999999876543322 1223467789999998766   57788999999999999999999986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCC-HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           .......+...... +... .........+.+|+.+||+.+|++|||+++++.|+|+..
T Consensus       215 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  272 (288)
T cd06616         215 -----SVFDQLTQVVKGDP-PILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKD  272 (288)
T ss_pred             -----hHHHHHhhhcCCCC-CcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhc
Confidence                 11111222221111 1111 110112234578999999999999999999999999976

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.89  E-value=2e-24  Score=142.21  Aligned_cols=136  Identities=25%  Similarity=0.363  Sum_probs=106.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      .|||++-+|..||.|||++..+...-....+.+||+.|+|||++..-.|...+||||+|++..||..|++||....++..
T Consensus       158 GNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIHPMRA  237 (502)
T KOG0574|consen  158 GNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIHPMRA  237 (502)
T ss_pred             ccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCcccccccce
Confidence            49999999999999999998877655555678899999999999988899999999999999999999999874444321


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                              .-++...+|+.+. ....-.-.+-+|+..||.++|+.|-|+.++++|+|++......
T Consensus       238 --------IFMIPT~PPPTF~-KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~g~~  293 (502)
T KOG0574|consen  238 --------IFMIPTKPPPTFK-KPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNAPGCD  293 (502)
T ss_pred             --------eEeccCCCCCCCC-ChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCCccc
Confidence                    1233344444432 1111122357899999999999999999999999998765443

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.88  E-value=7.6e-23  Score=136.40  Aligned_cols=127  Identities=24%  Similarity=0.374  Sum_probs=93.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++..............+++.|++||.+.+..++.++|+||+|++++++++|..||...     
T Consensus       131 ~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~-----  205 (257)
T cd08223         131 QNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAK-----  205 (257)
T ss_pred             hhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----
Confidence            589999999999999999987654333333455788899999998888888999999999999999999998521     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        .............. ++.+..   ....+.+++.+||+.+|++|||+.+++.|+|+
T Consensus       206 --~~~~~~~~~~~~~~-~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         206 --DMNSLVYRIIEGKL-PPMPKD---YSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             --CHHHHHHHHHhcCC-CCCccc---cCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence              11111122222222 111111   22235789999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.88  E-value=1.8e-23  Score=140.25  Aligned_cols=130  Identities=25%  Similarity=0.353  Sum_probs=87.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.   ...++.++|+||+|++++++++|..||.....
T Consensus       135 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~  214 (267)
T cd06646         135 ANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHP  214 (267)
T ss_pred             HHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccch
Confidence            489999999999999999886543322223345778899999874   33466789999999999999999999853221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ..       ............+...........+.+++.+||..+|++|||++++++|+|
T Consensus       215 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         215 MR-------ALFLMSKSNFQPPKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             hh-------hheeeecCCCCCCCCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence            10       000000111111111111111234578999999999999999999999876

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.88  E-value=2.8e-23  Score=139.28  Aligned_cols=130  Identities=25%  Similarity=0.323  Sum_probs=88.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+..............++..|+|||.+.   ...++.++|+||+|+++|++++|..||.....
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~  214 (267)
T cd06645         135 ANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHP  214 (267)
T ss_pred             HHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccc
Confidence            489999999999999999876543322223456788999999874   34467889999999999999999999752221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             .............++...........+.+++.+||+.+|++||+++++++|+|
T Consensus       215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         215 -------MRALFLMTKSNFQPPKLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             -------hhhHHhhhccCCCCCcccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence                   11111111111111111100011123578999999999999999999999986

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.88  E-value=7.4e-23  Score=139.28  Aligned_cols=132  Identities=19%  Similarity=0.273  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+..++.++|+||+|+++|++++|..||.....   
T Consensus       144 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~---  220 (296)
T cd06655         144 DNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP---  220 (296)
T ss_pred             HHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---
Confidence            48999999999999999887654333222334577789999999888788899999999999999999999863221   


Q ss_pred             CCCchhhHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          ............ ....+..   ....+.+++.+||..||++|||+++++.|+|+....
T Consensus       221 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~  276 (296)
T cd06655         221 ----LRALYLIATNGTPELQNPEK---LSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAK  276 (296)
T ss_pred             ----HHHHHHHHhcCCcccCCccc---CCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhcc
Confidence                111111111111 1111111   112346799999999999999999999999998744

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.88  E-value=2.6e-23  Score=148.26  Aligned_cols=139  Identities=19%  Similarity=0.214  Sum_probs=90.7

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++ .+||+|||+++.+..... .....+++.|+|||++.+. .++.++|+||+||++|+|++|.+||......
T Consensus       199 ~NILl~~~~~~vkL~DFGla~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~~  277 (440)
T PTZ00036        199 QNLLIDPNTHTLKLCDFGSAKNLLAGQR-SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSV  277 (440)
T ss_pred             HHEEEcCCCCceeeeccccchhccCCCC-cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            589998664 699999999986543322 2234678899999988654 5788999999999999999999998632211


Q ss_pred             CC-------CCCchhhHHHhhhc-----CCCCCCCHHHH-----HHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SS-------SSDPKIMLIDVLDQ-----RLPPPVDQKVI-----QDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~-------~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..       ...+..........     ..+.-......     .....+.+|+.+||..||.+|||+.+++.|+|+..
T Consensus       278 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~  356 (440)
T PTZ00036        278 DQLVRIIQVLGTPTEDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDD  356 (440)
T ss_pred             HHHHHHHHHhCCCCHHHHHHhchhhhcccCCccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHh
Confidence            00       00000000000000     00000000000     01234678999999999999999999999999976

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-22  Score=132.38  Aligned_cols=138  Identities=21%  Similarity=0.208  Sum_probs=99.0

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|+|...   |..+||+|||.++.... .....+.+.|+.|.|||++...+++..+|+||+||++|-+++|.+||-....
T Consensus       190 ENLLyt~t~~na~lKLtDfGFAK~t~~-~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg  268 (400)
T KOG0604|consen  190 ENLLYTTTSPNAPLKLTDFGFAKETQE-PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  268 (400)
T ss_pred             hheeeecCCCCcceEecccccccccCC-CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCC
Confidence            5777763   45689999999986443 2333445678999999999999999999999999999999999999862221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      ..   .......+...+.+..|- ++........+++++.+|..+|++|.|+++++.|+|+.....
T Consensus       269 ~a---ispgMk~rI~~gqy~FP~-pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~  330 (400)
T KOG0604|consen  269 LA---ISPGMKRRIRTGQYEFPE-PEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYEA  330 (400)
T ss_pred             cc---CChhHHhHhhccCccCCC-hhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhccccc
Confidence            11   111112222222222221 233344556799999999999999999999999999997443

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.88  E-value=1.4e-23  Score=142.85  Aligned_cols=137  Identities=20%  Similarity=0.295  Sum_probs=97.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+.+...+.++|+||+|+++|++++|..||....... 
T Consensus       144 ~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~~~-  222 (297)
T cd06656         144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPLR-  222 (297)
T ss_pred             HHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcch-
Confidence            4899999999999999998765443333333457788999999988878889999999999999999999986322111 


Q ss_pred             CCCchhhHHHhhh-cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccc
Q 040414           81 SSDPKIMLIDVLD-QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH  147 (160)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~  147 (160)
                            ....... .......+.   .....+.+++.+||+.+|++||++++++.|+|+........-
T Consensus       223 ------~~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~~~~~~  281 (297)
T cd06656         223 ------ALYLIATNGTPELQNPE---RLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAKPLSSL  281 (297)
T ss_pred             ------heeeeccCCCCCCCCcc---ccCHHHHHHHHHHccCChhhCcCHHHHhcCchhccccccccc
Confidence                  0000111 111111111   112234789999999999999999999999999876655443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.88  E-value=3.6e-23  Score=146.95  Aligned_cols=137  Identities=22%  Similarity=0.257  Sum_probs=94.5

Q ss_pred             CceeecCC--CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN--LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~--~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      |||||.+.  ..+||+|||++.......   .+++.+..|.|||++.+.+++.+.||||||||++||++|.+.|.+.+..
T Consensus       318 ENILL~~~~r~~vKVIDFGSSc~~~q~v---ytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~  394 (586)
T KOG0667|consen  318 ENILLKDPKRSRIKVIDFGSSCFESQRV---YTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEY  394 (586)
T ss_pred             hheeeccCCcCceeEEecccccccCCcc---eeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHH
Confidence            69999754  368999999998654332   2678899999999999999999999999999999999998887532111


Q ss_pred             CC---------------------------C--CCch-----------------hhHHH-hhhcCCCCC---CCHHHH-HH
Q 040414           79 SS---------------------------S--SDPK-----------------IMLID-VLDQRLPPP---VDQKVI-QD  107 (160)
Q Consensus        79 ~~---------------------------~--~~~~-----------------~~~~~-~~~~~~~~~---~~~~~~-~~  107 (160)
                      ..                           .  ..+.                 ..+.. ......++.   ...... ..
T Consensus       395 DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~  474 (586)
T KOG0667|consen  395 DQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKAD  474 (586)
T ss_pred             HHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCCcccchhccccc
Confidence            00                           0  0000                 00000 111112211   111111 22


Q ss_pred             HHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414          108 ILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus       108 ~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      -..+.+|+.+||..||..|+|..++++|+|+..
T Consensus       475 ~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~  507 (586)
T KOG0667|consen  475 DKLFIDFLKRCLEWDPAERITPAQALNHPFLTG  507 (586)
T ss_pred             HHHHHHHHHHHhccCchhcCCHHHHhcCccccc
Confidence            345789999999999999999999999999995

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.88  E-value=6.9e-23  Score=138.32  Aligned_cols=137  Identities=22%  Similarity=0.339  Sum_probs=95.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++.......  .....++..|++||.+.+..++.++|+||+|+++|++++|..||........
T Consensus       124 ~Nill~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~  201 (279)
T cd06619         124 SNMLVNTRGQVKLCDFGVSTQLVNSI--AKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQG  201 (279)
T ss_pred             HHEEECCCCCEEEeeCCcceeccccc--ccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhccccc
Confidence            48999999999999999987654321  2234578899999999888888999999999999999999999864322111


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ....... ...............  .....+.+++.+||+.+|++||++++++.|+|+....
T Consensus       202 ~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~~  260 (279)
T cd06619         202 SLMPLQL-LQCIVDEDPPVLPVG--QFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQYN  260 (279)
T ss_pred             ccchHHH-HHHHhccCCCCCCCC--cCCHHHHHHHHHHhhCChhhCCCHHHHhcCccccccc
Confidence            1111111 111111111111110  0112357899999999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.88  E-value=3.5e-23  Score=145.83  Aligned_cols=142  Identities=24%  Similarity=0.206  Sum_probs=95.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.++|+|||+++.......  ......|++.|++||++.+..++.++|+||+||++|+|++|..||......
T Consensus       214 ~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~  293 (392)
T PHA03207        214 ENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGKQVK  293 (392)
T ss_pred             HHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCCC
Confidence            489999999999999999876543322  122356889999999998888889999999999999999999998643221


Q ss_pred             CCC------------------CCchhhHHHh---hhcCCCCCC--CHHH--HHHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           79 SSS------------------SDPKIMLIDV---LDQRLPPPV--DQKV--IQDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        79 ~~~------------------~~~~~~~~~~---~~~~~~~~~--~~~~--~~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                      ...                  ..........   ......++.  +...  ......+.+++.+||..||++|||+.+++
T Consensus       294 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l  373 (392)
T PHA03207        294 SSSSQLRSIIRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDIL  373 (392)
T ss_pred             CcHHHHHHHHHHhccCccccCCccchhHHHHHHhhcccccCCccccchhhccCcchhHHHHHHHHhccChhhCCCHHHHh
Confidence            100                  0000000000   000000000  0000  01123457899999999999999999999


Q ss_pred             HHHhhhccC
Q 040414          134 QEFLITRKT  142 (160)
Q Consensus       134 ~~~~~~~~~  142 (160)
                      .|+||.+..
T Consensus       374 ~~p~f~~~~  382 (392)
T PHA03207        374 SLPLFTKEP  382 (392)
T ss_pred             hCchhhccc
Confidence            999998754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.88  E-value=6.9e-23  Score=147.49  Aligned_cols=129  Identities=26%  Similarity=0.286  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++|+||+||++|+|++|..||...   
T Consensus       198 ~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~---  274 (478)
T PTZ00267        198 ANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP---  274 (478)
T ss_pred             HhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC---
Confidence            599999999999999999987543322  223456899999999998888889999999999999999999998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ............... +.+...   ...+.+++.+||+.||++||++++++.++|+..
T Consensus       275 ----~~~~~~~~~~~~~~~-~~~~~~---s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~  328 (478)
T PTZ00267        275 ----SQREIMQQVLYGKYD-PFPCPV---SSGMKALLDPLLSKNPALRPTTQQLLHTEFLKY  328 (478)
T ss_pred             ----CHHHHHHHHHhCCCC-CCCccC---CHHHHHHHHHHhccChhhCcCHHHHHhCHHHHH
Confidence                112222222222221 111111   123578999999999999999999999988753

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=5.2e-23  Score=142.36  Aligned_cols=129  Identities=22%  Similarity=0.323  Sum_probs=101.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||+++.+........+.+||+.|++||.+.+.+|+.++||||+||++|||.+-+++|...+    
T Consensus       135 ~Nifltk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~----  210 (426)
T KOG0589|consen  135 ANIFLTKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN----  210 (426)
T ss_pred             hhhhccccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc----
Confidence            5899999999999999999998776656677889999999999999999999999999999999999999997322    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                         -.....+..... ..+.+.....   .+..++..|+..+|..||++.+++.++....
T Consensus       211 ---m~~Li~ki~~~~-~~Plp~~ys~---el~~lv~~~l~~~P~~RPsa~~LL~~P~l~~  263 (426)
T KOG0589|consen  211 ---MSELILKINRGL-YSPLPSMYSS---ELRSLVKSMLRKNPEHRPSALELLRRPHLLR  263 (426)
T ss_pred             ---hHHHHHHHhhcc-CCCCCccccH---HHHHHHHHHhhcCCccCCCHHHHhhChhhhh
Confidence               222333332222 2222222222   3467889999999999999999999977764

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.88  E-value=1.2e-22  Score=140.49  Aligned_cols=128  Identities=27%  Similarity=0.353  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....++..|+|||++.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       203 ~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~-  281 (338)
T cd05102         203 RNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ-  281 (338)
T ss_pred             ceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            5999999999999999999765332211  122334568999999988888999999999999999997 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ........+........+...   ...+.+++.+||+.||++|||+.++++.+..
T Consensus       282 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~cl~~dp~~RPs~~el~~~l~~  333 (338)
T cd05102         282 ------INEEFCQRLKDGTRMRAPENA---TPEIYRIMLACWQGDPKERPTFSALVEILGD  333 (338)
T ss_pred             ------ccHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                  111122222211111111111   1235789999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.88  E-value=5.6e-23  Score=141.89  Aligned_cols=132  Identities=21%  Similarity=0.295  Sum_probs=92.9

Q ss_pred             CceeecCCCceEEcccccceeccCCC-CccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++...... .......|++.|+|||.+.+.. ++.++|+||+|+++|+|++|..||......
T Consensus       134 ~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~  213 (332)
T cd05614         134 ENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGER  213 (332)
T ss_pred             HHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCC
Confidence            48999999999999999987643322 2223456899999999987653 677899999999999999999998632211


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                         ...............+  .+..   ....+.+++.+||+.||++||     +++++++|+|+..
T Consensus       214 ---~~~~~~~~~~~~~~~~--~~~~---~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~  272 (332)
T cd05614         214 ---NTQSEVSRRILKCDPP--FPSF---IGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKG  272 (332)
T ss_pred             ---CCHHHHHHHHhcCCCC--CCCC---CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence               1111111222222111  1111   112347899999999999999     8999999999875

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.88  E-value=4.7e-23  Score=139.24  Aligned_cols=128  Identities=23%  Similarity=0.337  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.+..............++..|+|||.+..     ..++.++|+||+|+++|++++|..||...
T Consensus       150 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~  229 (282)
T cd06636         150 QNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDM  229 (282)
T ss_pred             HHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcccc
Confidence            4899999999999999998755432222334557888999998752     34667899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..       ........ .........  ......+.+++.+||+.||.+|||+.+++.|+|+
T Consensus       230 ~~-------~~~~~~~~-~~~~~~~~~--~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         230 HP-------MRALFLIP-RNPPPKLKS--KKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             CH-------HhhhhhHh-hCCCCCCcc--cccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence            21       11111111 111111111  1112235789999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.88  E-value=8.5e-23  Score=141.09  Aligned_cols=138  Identities=24%  Similarity=0.353  Sum_probs=92.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS-   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~-   79 (160)
                      +||+++.++.+||+|||++......  ......++..|+|||.+.+..++.++|+||+||++|++++|..||....... 
T Consensus       133 ~Nili~~~~~~kL~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~  210 (333)
T cd06650         133 SNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPPDAKEL  210 (333)
T ss_pred             hhEEEcCCCCEEEeeCCcchhhhhh--ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcchhHH
Confidence            5899999999999999998754322  1223457889999999988888889999999999999999999985221100 


Q ss_pred             ---------CC-----------------------CCch---hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCC
Q 040414           80 ---------SS-----------------------SDPK---IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPK  124 (160)
Q Consensus        80 ---------~~-----------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~  124 (160)
                               ..                       ..+.   ......+.....+.....  .....+.+|+.+||+.||+
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~~P~  288 (333)
T cd06650         211 ELMFGCPVEGDPAESETSPRPRPPGRPLSSYGPDSRPPMAIFELLDYIVNEPPPKLPSG--VFGAEFQDFVNKCLIKNPA  288 (333)
T ss_pred             HHHhcCcccCCccccccCcccCCccchhhhhcccccccccHHHHHHHHhcCCCccCCCC--CcCHHHHHHHHHhccCCcc
Confidence                     00                       0000   000000111111111100  0112357899999999999


Q ss_pred             CCCCHHHHHHHHhhhccC
Q 040414          125 SRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       125 ~Rps~~~~~~~~~~~~~~  142 (160)
                      +|||+++++.|+|++...
T Consensus       289 ~Rpt~~ell~h~~~~~~~  306 (333)
T cd06650         289 ERADLKQLMVHAFIKRSE  306 (333)
T ss_pred             cCcCHHHHhhCHHHhcCc
Confidence            999999999999998754

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1.9e-23  Score=143.58  Aligned_cols=131  Identities=21%  Similarity=0.236  Sum_probs=96.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||+|+.|++.|+|+|++..+..... ....+||.+|||||++....|+...|.||+||++|+|+.|..||.....-..
T Consensus       316 eNILLDd~GhvRISDLGLAvei~~g~~-~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk  394 (591)
T KOG0986|consen  316 ENILLDDHGHVRISDLGLAVEIPEGKP-IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVK  394 (591)
T ss_pred             hheeeccCCCeEeeccceEEecCCCCc-cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhh
Confidence            699999999999999999987665543 3345899999999999999999999999999999999999999962221110


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                          ...+.+... ..+..++..+.   ..+++++...|+.||.+|.     .+++|.+|++|+.
T Consensus       395 ----~eEvdrr~~-~~~~ey~~kFS---~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~  451 (591)
T KOG0986|consen  395 ----REEVDRRTL-EDPEEYSDKFS---EEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKD  451 (591)
T ss_pred             ----HHHHHHHHh-cchhhcccccC---HHHHHHHHHHHccCHHHhccCCCcCcchhhhCccccc
Confidence                011111111 11222222222   3357788899999999995     5679999999986

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.88  E-value=7.4e-23  Score=136.34  Aligned_cols=129  Identities=26%  Similarity=0.406  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+..++.++|+||+|++++++++|..||......  
T Consensus       128 ~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~~--  205 (256)
T cd06612         128 GNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHPM--  205 (256)
T ss_pred             ceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcchh--
Confidence            589999999999999999886554332223344677899999998888888999999999999999999998632211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           ..... ......... .........+.+++.+||+.||++|||+++++.|+|+
T Consensus       206 -----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         206 -----RAIFM-IPNKPPPTL-SDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             -----hhhhh-hccCCCCCC-CchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence                 11111 111111111 1111112235789999999999999999999999985

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.88  E-value=6.3e-23  Score=143.52  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=93.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC----CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM----VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~----~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||.+........ ......|++.|+|||++...    .++.++|+||+||++|+|++|.+||...
T Consensus       171 ~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         171 DNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             HHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            489999999999999999876543322 22345689999999998653    3677899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~  140 (160)
                      .       .................+. .......+.+++.+||..+|++  |+|+++++.|+|+..
T Consensus       251 ~-------~~~~~~~i~~~~~~~~~~~-~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~  309 (370)
T cd05596         251 S-------LVGTYSKIMDHKNSLTFPD-DIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKN  309 (370)
T ss_pred             C-------HHHHHHHHHcCCCcCCCCC-cCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCC
Confidence            2       1222222222211111111 1112234578999999999987  999999999999976

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.88  E-value=4.7e-23  Score=141.00  Aligned_cols=142  Identities=16%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............++..|++||.+.+. .++.++|+||+|+++++|++|.+||.......
T Consensus       133 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~  212 (309)
T cd07872         133 QNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGSTVED  212 (309)
T ss_pred             HHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            48999999999999999987644333223334567889999988653 46788999999999999999999986322100


Q ss_pred             C-------CCCchhhHHHhh-------hcCCCC--C--CCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 S-------SSDPKIMLIDVL-------DQRLPP--P--VDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~-------~~~~~~--~--~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .       ...+....+..+       ....+.  +  ...........+.+++.+||+.||.+|||+++++.|+|+..-
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~  292 (309)
T cd07872         213 ELHLIFRLLGTPTEETWPGISSNDEFKNYNFPKYKPQPLINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSL  292 (309)
T ss_pred             HHHHHHHHhCCCCHHHHhhhcchhhhhhhhcCccCCCchhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhc
Confidence            0       000000000000       000000  0  000011122345789999999999999999999999999874


Q ss_pred             C
Q 040414          142 T  142 (160)
Q Consensus       142 ~  142 (160)
                      .
T Consensus       293 ~  293 (309)
T cd07872         293 G  293 (309)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.88  E-value=9e-23  Score=138.63  Aligned_cols=137  Identities=22%  Similarity=0.303  Sum_probs=97.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++..............++..|+|||.+....++.++|+||+|++++++++|..||.....   
T Consensus       147 ~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~---  223 (292)
T cd06658         147 DSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP---  223 (292)
T ss_pred             HHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---
Confidence            48999999999999999987544332222334578889999999887788899999999999999999999862211   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVK  146 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~  146 (160)
                          .... .......+.... ........+.+++.+||..||.+|||++++++|+|+........
T Consensus       224 ----~~~~-~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~~~  283 (292)
T cd06658         224 ----LQAM-RRIRDNLPPRVK-DSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPSC  283 (292)
T ss_pred             ----HHHH-HHHHhcCCCccc-cccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCCccc
Confidence                1111 111111111111 11112223578999999999999999999999999997665543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-22  Score=141.09  Aligned_cols=132  Identities=22%  Similarity=0.228  Sum_probs=100.7

Q ss_pred             CceeecCC----CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSN----LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~----~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +|+|+...    +.+|++|||++..... .......+||+.|+|||++.+..++..+||||+|+++|.|++|.+||....
T Consensus       164 EN~L~~~~~~~~~~ik~~DFGla~~~~~-~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~  242 (382)
T KOG0032|consen  164 ENLLLASKDEGSGRIKLIDFGLAKFIKP-GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGET  242 (382)
T ss_pred             HHeeeccccCCCCcEEEeeCCCceEccC-CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCC
Confidence            47888533    4799999999997665 445566889999999999999899999999999999999999999996322


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                             ............+..+.. ........+++++..++..||..|+|+.++++|+|+...
T Consensus       243 -------~~~~~~~i~~~~~~f~~~-~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  243 -------EFEIFLAILRGDFDFTSE-PWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI  299 (382)
T ss_pred             -------hhHHHHHHHcCCCCCCCC-CccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence                   222333444343322211 122224456899999999999999999999999998874

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=1.9e-23  Score=144.11  Aligned_cols=129  Identities=22%  Similarity=0.304  Sum_probs=92.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.++|+|||+++.............|++.|+|||.+.+.. ++.++|+||+|+++|+|++|..||...    
T Consensus       125 ~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~----  200 (330)
T cd05586         125 ENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAE----  200 (330)
T ss_pred             HHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCC----
Confidence            489999999999999999875433333333456899999999987543 688899999999999999999998522    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC----CHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP----TMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp----s~~~~~~~~~~~~  140 (160)
                         ................+..  .  ....+.+++.+||..||++||    +++++++|+|+..
T Consensus       201 ---~~~~~~~~i~~~~~~~~~~--~--~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~  258 (330)
T cd05586         201 ---DTQQMYRNIAFGKVRFPKN--V--LSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFAD  258 (330)
T ss_pred             ---CHHHHHHHHHcCCCCCCCc--c--CCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccC
Confidence               1112222222121111111  0  112346899999999999998    7999999999975

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.88  E-value=5.3e-23  Score=138.78  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+....... ......++..|+|||.+.+..++.++|+||+|+++|++++|..||.....   
T Consensus       124 ~Nili~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~---  199 (277)
T cd05607         124 ENVLLDDQGNCRLSDLGLAVELKDGK-TITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKE---  199 (277)
T ss_pred             HhEEEcCCCCEEEeeceeeeecCCCc-eeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcc---
Confidence            58999999999999999987654332 22234578899999999888888999999999999999999999863221   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~~~~~~  141 (160)
                      .................... .   .....+.+++.+||+.||++||++    ++++.|+|+..-
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~  260 (277)
T cd05607         200 KVAKEELKRRTLEDEVKFEH-Q---NFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTI  260 (277)
T ss_pred             hhhHHHHHHHhhcccccccc-c---cCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCC
Confidence            00111111111211111110 1   112235789999999999999999    778899999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.88  E-value=6.8e-23  Score=137.08  Aligned_cols=139  Identities=20%  Similarity=0.165  Sum_probs=97.3

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      .|+|+|.+ |.+||||||.|+.+..+ .+..++..|..|.|||.+.+. .|+.+.|+||.|||+.||+.|++.|.+.+..
T Consensus       154 qNlLvD~~tg~LKicDFGSAK~L~~~-epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~  232 (364)
T KOG0658|consen  154 QNLLVDPDTGVLKICDFGSAKVLVKG-EPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSV  232 (364)
T ss_pred             heEEEcCCCCeEEeccCCcceeeccC-CCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHH
Confidence            49999965 99999999999987644 344567789999999998876 4789999999999999999999999754332


Q ss_pred             CC-------CCCchhhHHHhhhcCCC-CCC------CH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SS-------SSDPKIMLIDVLDQRLP-PPV------DQ---KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~-------~~~~~~~~~~~~~~~~~-~~~------~~---~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..       -..+.......+..... ..+      ..   ..........+|+.++|..+|++|.++.+++.|++|..
T Consensus       233 dQL~eIik~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFde  311 (364)
T KOG0658|consen  233 DQLVEIIKVLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDE  311 (364)
T ss_pred             HHHHHHHHHhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHH
Confidence            21       00111111111111100 000      00   11112234678999999999999999999999999987

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.88  E-value=7.8e-23  Score=138.25  Aligned_cols=138  Identities=19%  Similarity=0.163  Sum_probs=88.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+.. ++.++|+||+|+++++|++|..|+.......
T Consensus       128 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~~~~~~~~  207 (284)
T cd07839         128 QNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD  207 (284)
T ss_pred             HHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCCcCCCCHH
Confidence            489999999999999999886544333333345678899999887654 5788999999999999999988753211100


Q ss_pred             C---------CCCchhh---HHHhhhcCCCCCCCH------HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S---------SSDPKIM---LIDVLDQRLPPPVDQ------KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~---------~~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .         .......   ...............      ........+.+++.+||+.||.+|||+++++.|+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         208 DQLKRIFRLLGTPTEESWPGVSKLPDYKPYPMYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             HHHHHHHHHhCCCChHHhHHhhhcccccccCCCCCcchhhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            0         0000000   000000000000000      001122345789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.88  E-value=2.9e-22  Score=135.16  Aligned_cols=132  Identities=23%  Similarity=0.391  Sum_probs=96.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+..............++..|++||.+.+...+.++|+||+|++++++++|.+||.....   
T Consensus       130 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~---  206 (277)
T cd06640         130 ANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHP---  206 (277)
T ss_pred             hhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcCh---
Confidence            58999999999999999987665433222334567789999999887788899999999999999999999863221   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                          .. .........++.....   ....+.+++.+||+.+|++||++++++.|+|+.....
T Consensus       207 ----~~-~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~  261 (277)
T cd06640         207 ----MR-VLFLIPKNNPPTLTGE---FSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKNAK  261 (277)
T ss_pred             ----Hh-HhhhhhcCCCCCCchh---hhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhcch
Confidence                11 1111112222222222   2234578999999999999999999999999987553

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.88  E-value=1.2e-22  Score=139.25  Aligned_cols=138  Identities=20%  Similarity=0.190  Sum_probs=87.3

Q ss_pred             Cceee----cCCCceEEcccccceeccCCCC---ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIIL----NSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill----~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +||++    +.++.+||+|||+++.......   ......+++.|+|||.+.+. .++.++|+||+|+++|+|++|.+||
T Consensus       137 ~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f  216 (317)
T cd07867         137 ANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             HHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCc
Confidence            48998    5667899999999986543321   12234578899999998764 4678899999999999999999998


Q ss_pred             ccccccCCCCC--chhhHHHhhh--------------cCCC----------CCCC-HHHH--------HHHHHHHHHHHh
Q 040414           73 DLLSSLSSSSD--PKIMLIDVLD--------------QRLP----------PPVD-QKVI--------QDILLASTISFA  117 (160)
Q Consensus        73 ~~~~~~~~~~~--~~~~~~~~~~--------------~~~~----------~~~~-~~~~--------~~~~~~~~l~~~  117 (160)
                      ...........  ..........              ....          .... ....        .....+.+++.+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  296 (317)
T cd07867         217 HCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQK  296 (317)
T ss_pred             ccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchhhhhhhcccccCCchhhhhhhcccCCCChHHHHHHHH
Confidence            53211100000  0000000000              0000          0000 0000        001235679999


Q ss_pred             hhccCCCCCCCHHHHHHHHhh
Q 040414          118 CLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus       118 cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ||..||.+|||++++++|+|+
T Consensus       297 ~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         297 LLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             HhccCcccccCHHHHhcCCCC
Confidence            999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=4.8e-22  Score=137.73  Aligned_cols=134  Identities=36%  Similarity=0.577  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccc-cccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLL-AGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~-~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||||+++.+||+|||+++............ .||.+|++||++..+..+.++|+||||+++.|+++|+.+.+......
T Consensus       206 sNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~  285 (361)
T KOG1187|consen  206 SNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRG  285 (361)
T ss_pred             HHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcc
Confidence            59999999999999999997543312222222 78999999999998889999999999999999999998765322111


Q ss_pred             CCCCch--------hhHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPK--------IMLIDVLDQRLP-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ......        ..+...+++.+. ......  .....+..+..+|++.+|..||+|.+|+..+
T Consensus       286 ~~~l~~w~~~~~~~~~~~eiiD~~l~~~~~~~~--~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~~L  349 (361)
T KOG1187|consen  286 ELSLVEWAKPLLEEGKLREIVDPRLKEGEYPDE--KEVKKLAELALRCLRPDPKERPTMSQVVKEL  349 (361)
T ss_pred             cccHHHHHHHHHHCcchhheeCCCccCCCCChH--HHHHHHHHHHHHHcCcCCCcCcCHHHHHHHH
Confidence            000000        122333444443 222211  4455567888999999999999999998877

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.88  E-value=1.5e-22  Score=139.31  Aligned_cols=129  Identities=23%  Similarity=0.368  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|.+||...     
T Consensus       130 ~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~-----  204 (323)
T cd05615         130 DNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE-----  204 (323)
T ss_pred             HHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC-----
Confidence            489999999999999999875433322333456889999999998888889999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~~  141 (160)
                        ................+.  ..   ...+.+++.+||+.+|.+|++     .+++++|+|+...
T Consensus       205 --~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         205 --DEDELFQSIMEHNVSYPK--SL---SKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             --CHHHHHHHHHhCCCCCCc--cC---CHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence              122222333322222111  11   123478999999999999997     5799999998863

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.88  E-value=1.9e-22  Score=136.95  Aligned_cols=135  Identities=21%  Similarity=0.306  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+     ..++.++|+||+|+++|++++|.+||...
T Consensus       139 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  218 (292)
T cd06644         139 GNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  218 (292)
T ss_pred             ceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccc
Confidence            5899999999999999988754333222233457788999998853     33567899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                      .       .............+. .....   ....+.+++.+||+.+|++||+++++++|+|+.......
T Consensus       219 ~-------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~~~  279 (292)
T cd06644         219 N-------PMRVLLKIAKSEPPTLSQPSK---WSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSVTSNR  279 (292)
T ss_pred             c-------HHHHHHHHhcCCCccCCCCcc---cCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccccch
Confidence            2       111222222111111 11111   112346799999999999999999999999997654433

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.87  E-value=1.7e-22  Score=137.07  Aligned_cols=130  Identities=24%  Similarity=0.347  Sum_probs=90.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-----CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-----MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-----~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+....     ++.++|+||+|+++|++++|.+||...
T Consensus       157 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~  236 (291)
T cd06639         157 NNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM  236 (291)
T ss_pred             HHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCC
Confidence            489999999999999999876543322223345777899999876432     467899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      .       ......... ...+.... ........+.+++.+||+.+|++||++++++.|+|+.
T Consensus       237 ~-------~~~~~~~~~-~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         237 H-------PVKTLFKIP-RNPPPTLL-HPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             c-------HHHHHHHHh-cCCCCCCC-cccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence            1       111122211 11111110 0011122367899999999999999999999999973

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=8.6e-23  Score=148.69  Aligned_cols=130  Identities=22%  Similarity=0.370  Sum_probs=98.6

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccc--cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRT--LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~--~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      |+|+.++..|||+|||+++-+-+......  .-.-+..||+||.+.++++++.+||||+||++||+++ |+.|+..+   
T Consensus       633 NCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~gl---  709 (774)
T KOG1026|consen  633 NCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGL---  709 (774)
T ss_pred             hceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhccccCccccc---
Confidence            89999999999999999986654433221  1223558999999999999999999999999999995 88887522   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          ... ...+.+..+...+.+..++.++   -+||..||+.+|.+||++.+|-..+..-.+.
T Consensus       710 ----Sn~-EVIe~i~~g~lL~~Pe~CP~~v---Y~LM~~CW~~~P~~RPsF~eI~~~L~~~~~~  765 (774)
T KOG1026|consen  710 ----SNQ-EVIECIRAGQLLSCPENCPTEV---YSLMLECWNENPKRRPSFKEIHSRLQAWAQA  765 (774)
T ss_pred             ----chH-HHHHHHHcCCcccCCCCCCHHH---HHHHHHHhhcCcccCCCHHHHHHHHHHHHhc
Confidence                222 3334444444466666676664   5689999999999999999998887665543

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.87  E-value=1.6e-22  Score=137.89  Aligned_cols=126  Identities=24%  Similarity=0.354  Sum_probs=99.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||+|.|+++||.|||++..+... ....+++|++.|.+||++.+.+| ++..|.||+|+++|.++.|..||+      
T Consensus       182 ENILLD~N~NiKIADFGLSNly~~~-kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFD------  254 (668)
T KOG0611|consen  182 ENILLDQNNNIKIADFGLSNLYADK-KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFD------  254 (668)
T ss_pred             hheeecCCCCeeeeccchhhhhccc-cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccC------
Confidence            6999999999999999999876544 34566889999999999999988 677999999999999999999998      


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                       +........+...+.+..+.-+.      ...-||.-||..+|++|.|+++|..|.|+.=
T Consensus       255 -G~Dhk~lvrQIs~GaYrEP~~PS------dA~gLIRwmLmVNP~RRATieDiAsHWWvNw  308 (668)
T KOG0611|consen  255 -GRDHKRLVRQISRGAYREPETPS------DASGLIRWMLMVNPERRATIEDIASHWWVNW  308 (668)
T ss_pred             -CchHHHHHHHhhcccccCCCCCc------hHHHHHHHHHhcCcccchhHHHHhhhheeec
Confidence             33334444444444333221111      1256888899999999999999999999873

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.87  E-value=1.8e-22  Score=135.33  Aligned_cols=128  Identities=20%  Similarity=0.322  Sum_probs=89.1

Q ss_pred             CceeecCCCceEEcccccceeccCCC---CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++......   .......++..|++||.+.+..++.++|+||+|++++++++|..||...  
T Consensus       135 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~--  212 (266)
T cd06651         135 ANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY--  212 (266)
T ss_pred             HHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc--
Confidence            48999999999999999987543211   1112234677899999998887888999999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ...............+..+...   ...+.+++ .||..+|++||+++++++|+|+.
T Consensus       213 -----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         213 -----EAMAAIFKIATQPTNPQLPSHI---SEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             -----chHHHHHHHhcCCCCCCCchhc---CHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence                 1122222222211122222111   22245566 68889999999999999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.87  E-value=6.2e-23  Score=136.82  Aligned_cols=142  Identities=18%  Similarity=0.147  Sum_probs=99.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      .|||++.+|.+||+|||+++...-......+.+.|.+|.|||++.+. .+++..||||+||+++||+++++.|...+...
T Consensus       149 QNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~  228 (323)
T KOG0594|consen  149 QNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEID  228 (323)
T ss_pred             ceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHH
Confidence            49999999999999999999765444445567789999999999887 57899999999999999999999887433211


Q ss_pred             C-------------CCCchhhHHHhhhcCC---C--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 S-------------SSDPKIMLIDVLDQRL---P--PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~-------------~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .             ..++........+...   .  .+.............+++.+||+.+|.+|.|++.++.|++|...
T Consensus       229 ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  229 QLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPKDLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             HHHHHHHHcCCCCccCCCCccccccccccCcCCCCccchHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccc
Confidence            0             1111111000000011   1  11111111111356889999999999999999999999999875


Q ss_pred             C
Q 040414          142 T  142 (160)
Q Consensus       142 ~  142 (160)
                      .
T Consensus       309 ~  309 (323)
T KOG0594|consen  309 P  309 (323)
T ss_pred             c
Confidence            4

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.87  E-value=9.2e-23  Score=140.27  Aligned_cols=128  Identities=22%  Similarity=0.309  Sum_probs=92.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||.+.+..++.++|+||+||++|+|++|..||...     
T Consensus       125 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----  199 (321)
T cd05603         125 ENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----  199 (321)
T ss_pred             HHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCC-----
Confidence            489999999999999999875333222333456888999999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~~~~~  140 (160)
                        ................+.  .   ....+.+++.+||+.||.+|+++    .++++|+|+..
T Consensus       200 --~~~~~~~~i~~~~~~~~~--~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         200 --DVSQMYDNILHKPLQLPG--G---KTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             --CHHHHHHHHhcCCCCCCC--C---CCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCC
Confidence              112222222222222111  1   11234789999999999999875    58999998864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.87  E-value=1.6e-22  Score=141.67  Aligned_cols=141  Identities=22%  Similarity=0.194  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++....... ......+++.|+|||.+.+.. ++.++|+||+||++++|++|+.||......
T Consensus       132 ~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~  211 (372)
T cd07853         132 GNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPI  211 (372)
T ss_pred             HHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCCCHH
Confidence            599999999999999999886543221 122245678899999987643 678899999999999999999998633211


Q ss_pred             CC--------CCCchhh-------HHHhh-hcCCCCCCCHHH----HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           79 SS--------SSDPKIM-------LIDVL-DQRLPPPVDQKV----IQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        79 ~~--------~~~~~~~-------~~~~~-~~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..        +......       ....+ .....++.....    ......+.+|+.+||+.||++|||+++++.|+|+
T Consensus       212 ~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~  291 (372)
T cd07853         212 QQLDLITDLLGTPSLEAMRSACEGARAHILRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYL  291 (372)
T ss_pred             HHHHHHHHHcCCCCHHHHHHhhHHHHHHHHhCCCCCCchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhh
Confidence            00        0000000       00000 000111100000    0012345789999999999999999999999999


Q ss_pred             hcc
Q 040414          139 TRK  141 (160)
Q Consensus       139 ~~~  141 (160)
                      ...
T Consensus       292 ~~~  294 (372)
T cd07853         292 DEG  294 (372)
T ss_pred             CCC
Confidence            873

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.87  E-value=2.1e-22  Score=136.88  Aligned_cols=140  Identities=21%  Similarity=0.319  Sum_probs=98.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+....++.++|+||+|+++|++++|..||......  
T Consensus       144 ~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~~--  221 (293)
T cd06647         144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENPL--  221 (293)
T ss_pred             HHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCChh--
Confidence            489999999999999998875543333233345777899999998877888999999999999999999998632211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccccc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAA  149 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~~  149 (160)
                           ........... +... ........+.+++.+||..+|++||++++++.|+|+.......+-++
T Consensus       222 -----~~~~~~~~~~~-~~~~-~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~~~~~~~~  283 (293)
T cd06647         222 -----RALYLIATNGT-PELQ-NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAKPLSSLTP  283 (293)
T ss_pred             -----hheeehhcCCC-CCCC-CccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCcccccccc
Confidence                 11111111111 1110 11112223578999999999999999999999999998776555443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.87  E-value=8.8e-23  Score=144.73  Aligned_cols=124  Identities=24%  Similarity=0.215  Sum_probs=93.5

Q ss_pred             Cceee-cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIIL-NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill-~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||+ ++.++++|+|||.++.....   ..+.+-|..|.|||++....++.++|+||+|+++|+|++|+.||....   
T Consensus       444 ~NIL~~~~~g~lrltyFG~a~~~~~~---~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P---  517 (612)
T KOG0603|consen  444 GNILLDGSAGHLRLTYFGFWSELERS---CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHP---  517 (612)
T ss_pred             hheeecCCCCcEEEEEechhhhCchh---hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCC---
Confidence            59999 68999999999999876544   223345668999999998889999999999999999999999986221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ....+...+.   .+++.   ......+++|+.+||+.||.+|++++++..|+|+..
T Consensus       518 ----~~~ei~~~i~---~~~~s---~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~h~w~~~  568 (612)
T KOG0603|consen  518 ----AGIEIHTRIQ---MPKFS---ECVSDEAKDLLQQLLQVDPALRLGADEIGAHPWFLS  568 (612)
T ss_pred             ----chHHHHHhhc---CCccc---cccCHHHHHHHHHhccCChhhCcChhhhccCcchhc
Confidence                1112222221   12111   122334689999999999999999999999999943

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.87  E-value=3.9e-23  Score=141.92  Aligned_cols=128  Identities=25%  Similarity=0.346  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|++||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       127 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~----  202 (318)
T cd05582         127 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKD----  202 (318)
T ss_pred             HHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCC----
Confidence            4899999999999999998765443333344568889999999988878889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                         ...............+  ...   ...+.+++.+||+.||++||+     +++++.|+|+..
T Consensus       203 ---~~~~~~~i~~~~~~~p--~~~---~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~  259 (318)
T cd05582         203 ---RKETMTMILKAKLGMP--QFL---SPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFST  259 (318)
T ss_pred             ---HHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCC
Confidence               1222222222222111  111   122467999999999999999     788999998864

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.87  E-value=1.4e-22  Score=135.71  Aligned_cols=133  Identities=23%  Similarity=0.333  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+.........  ...++..|++||.+.+..++.++|+||+|++++++++|..||......  
T Consensus       130 ~ni~~~~~~~~~l~d~g~~~~~~~~~~~--~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~--  205 (265)
T cd06605         130 SNILVNSRGQIKLCDFGVSGQLVNSLAK--TFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDP--  205 (265)
T ss_pred             HHEEECCCCCEEEeecccchhhHHHHhh--cccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccc--
Confidence            4899999999999999988755322111  145677899999998888889999999999999999999998633210  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ............ ....+..+...  ....+.+++.+||..||++|||+.+++.|+|+++
T Consensus       206 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         206 PDGIFELLQYIV-NEPPPRLPSGK--FSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             cccHHHHHHHHh-cCCCCCCChhh--cCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence            011111111222 22222222221  2223578999999999999999999999999965

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.87  E-value=1.2e-22  Score=137.52  Aligned_cols=133  Identities=20%  Similarity=0.330  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       144 ~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~----  219 (285)
T cd06648         144 DSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP----  219 (285)
T ss_pred             hhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC----
Confidence            5899999999999999987654433222233457888999999988778889999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         +....... ....++... ........+.+++.+||+.+|++|||++++++|+|+....
T Consensus       220 ---~~~~~~~~-~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  276 (285)
T cd06648         220 ---PLQAMKRI-RDNLPPKLK-NLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAG  276 (285)
T ss_pred             ---HHHHHHHH-HhcCCCCCc-ccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCC
Confidence               11111111 111111111 0111122357899999999999999999999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.87  E-value=9.6e-23  Score=140.39  Aligned_cols=128  Identities=21%  Similarity=0.276  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|.+||....    
T Consensus       125 ~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~----  200 (325)
T cd05602         125 ENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN----  200 (325)
T ss_pred             HHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCC----
Confidence            4899999999999999998754333333344568999999999998888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH----HHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ----YVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~----~~~~~~~~~~  140 (160)
                         ...............  ...   ....+.+++.+||+.||.+|+++.    ++++|+|+..
T Consensus       201 ---~~~~~~~i~~~~~~~--~~~---~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~  256 (325)
T cd05602         201 ---TAEMYDNILNKPLQL--KPN---ITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSP  256 (325)
T ss_pred             ---HHHHHHHHHhCCcCC--CCC---CCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCC
Confidence               122222222221111  111   112347899999999999999865    8888888753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.87  E-value=1.9e-22  Score=134.44  Aligned_cols=127  Identities=24%  Similarity=0.390  Sum_probs=92.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+..............++..|++||.+.+...+.++|+||+|++++++++|..||...     
T Consensus       130 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~-----  204 (256)
T cd08218         130 QNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEAG-----  204 (256)
T ss_pred             HHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccCC-----
Confidence            489999999999999999876544322222345677899999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        ..............+ +.+...   ...+.+++.+||+.+|++||++.+++.|+|+
T Consensus       205 --~~~~~~~~~~~~~~~-~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         205 --NMKNLVLKIIRGSYP-PVSSHY---SYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             --CHHHHHHHHhcCCCC-CCcccC---CHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence              122222333222222 111111   2235789999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.87  E-value=5.6e-23  Score=143.20  Aligned_cols=139  Identities=19%  Similarity=0.234  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcc-ccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR-DLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~-~~~~~~~   79 (160)
                      +|||++.++.+||+|||.++..... .......|++.|++||.+.+..++.++|+||+||++|+++++..++ .......
T Consensus       186 ~Nill~~~~~~kl~DfG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~~~~~~  264 (357)
T PHA03209        186 ENIFINDVDQVCIGDLGAAQFPVVA-PAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTP  264 (357)
T ss_pred             HHEEECCCCCEEEecCccccccccC-cccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccCCCCcH
Confidence            4899999999999999998753322 1222355888999999998888899999999999999999865443 2111000


Q ss_pred             C--CCCchhhHHHhhhc------CCC-------------------CCCC-HHHH---HHHHHHHHHHHhhhccCCCCCCC
Q 040414           80 S--SSDPKIMLIDVLDQ------RLP-------------------PPVD-QKVI---QDILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        80 ~--~~~~~~~~~~~~~~------~~~-------------------~~~~-~~~~---~~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      .  .......+...+..      ..+                   .+.. ..+.   .....+.+|+.+||+.||++|||
T Consensus       265 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rpt  344 (357)
T PHA03209        265 EEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCFQRVNLPIDGEFLVHKMLTFDAAMRPS  344 (357)
T ss_pred             HHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCcccccHHHhccCCCchHHHHHHHHHcCCcccCcC
Confidence            0  00000001110000      000                   0000 0000   01123456899999999999999


Q ss_pred             HHHHHHHHhhhc
Q 040414          129 MQYVSQEFLITR  140 (160)
Q Consensus       129 ~~~~~~~~~~~~  140 (160)
                      ++++++|+|++.
T Consensus       345 a~e~l~hp~f~~  356 (357)
T PHA03209        345 AEEILNYPMFAQ  356 (357)
T ss_pred             HHHHhcCchhcc
Confidence            999999999974

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.87  E-value=1.4e-22  Score=137.95  Aligned_cols=133  Identities=22%  Similarity=0.320  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++..............++..|++||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       146 ~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~----  221 (297)
T cd06659         146 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDS----  221 (297)
T ss_pred             HHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998755433322333557889999999988888889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ....... +........ .........+.+++.+||+.+|++||+++++++|+|+....
T Consensus       222 ---~~~~~~~-~~~~~~~~~-~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         222 ---PVQAMKR-LRDSPPPKL-KNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTG  278 (297)
T ss_pred             ---HHHHHHH-HhccCCCCc-cccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCC
Confidence               1111111 111111110 00111122357899999999999999999999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.87  E-value=3.2e-22  Score=134.91  Aligned_cols=131  Identities=28%  Similarity=0.451  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||++..............++..|++||.+.+..++.++|+||+|++++++++|..|+......  
T Consensus       130 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~--  207 (277)
T cd06642         130 ANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPM--  207 (277)
T ss_pred             heEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchh--
Confidence            589999999999999999876543322223345677899999998887888999999999999999999998632211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           .... .......+....   .....+.+++.+||+.+|++||++.+++.|+|+....
T Consensus       208 -----~~~~-~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  260 (277)
T cd06642         208 -----RVLF-LIPKNSPPTLEG---QYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITRYT  260 (277)
T ss_pred             -----hHHh-hhhcCCCCCCCc---ccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHHHh
Confidence                 1111 111111111111   1122357899999999999999999999999988633

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.87  E-value=6.6e-23  Score=141.19  Aligned_cols=128  Identities=25%  Similarity=0.281  Sum_probs=93.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|.+||...     
T Consensus       125 ~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~-----  199 (325)
T cd05604         125 ENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCR-----  199 (325)
T ss_pred             HHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCC-----
Confidence            489999999999999999875433223333456889999999999888889999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~~~~~  140 (160)
                        ..................  .   ....+.+++.+||+.+|.+||++    .+++.|+|+..
T Consensus       200 --~~~~~~~~~~~~~~~~~~--~---~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~  256 (325)
T cd05604         200 --DVAEMYDNILHKPLVLRP--G---ASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFES  256 (325)
T ss_pred             --CHHHHHHHHHcCCccCCC--C---CCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCC
Confidence              122222222222221111  1   11224678999999999999876    58999999875

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=2.5e-22  Score=134.95  Aligned_cols=129  Identities=26%  Similarity=0.376  Sum_probs=90.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-----CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-----VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-----~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+...     .++.++|+||+|++++++++|.+||...
T Consensus       142 ~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  221 (275)
T cd06608         142 QNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM  221 (275)
T ss_pred             HHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc
Confidence            48999999999999999987654433333345578889999987542     3567899999999999999999998622


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ......+.... ....... .......+.+++.+||..||++|||+++++.|+|+
T Consensus       222 ~-------~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         222 H-------PMRALFKIPRN-PPPTLKS-PENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             c-------hHHHHHHhhcc-CCCCCCc-hhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence            1       11222222221 1111111 11122345789999999999999999999999985

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.87  E-value=4.2e-22  Score=134.62  Aligned_cols=126  Identities=21%  Similarity=0.335  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       153 ~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~-  231 (283)
T cd05048         153 RNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS-  231 (283)
T ss_pred             ceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC-
Confidence            599999999999999999876533221  1222345678999999988888899999999999999997 888876221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            . ......+......+.+....   ..+.+++.+||+.||++||++.++++++.
T Consensus       232 ------~-~~~~~~i~~~~~~~~~~~~~---~~~~~l~~~c~~~~p~~Rp~~~~i~~~l~  281 (283)
T cd05048         232 ------N-QEVIEMIRSRQLLPCPEDCP---ARVYALMIECWNEIPARRPRFKDIHTRLR  281 (283)
T ss_pred             ------H-HHHHHHHHcCCcCCCcccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHh
Confidence                  1 12222232222222222222   33578999999999999999999998874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.87  E-value=3.3e-22  Score=135.83  Aligned_cols=101  Identities=23%  Similarity=0.307  Sum_probs=83.1

Q ss_pred             ccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHH
Q 040414           32 LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA  111 (160)
Q Consensus        32 ~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (160)
                      .+||..|+|||++.+...+.++|+|+|||++|||+.|.-||.       +......+..++.+.+..+...   .....+
T Consensus       295 FVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFK-------G~~~~~Tl~NIv~~~l~Fp~~~---~vs~~a  364 (459)
T KOG0610|consen  295 FVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFK-------GSNNKETLRNIVGQPLKFPEEP---EVSSAA  364 (459)
T ss_pred             cccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcC-------CCCchhhHHHHhcCCCcCCCCC---cchhHH
Confidence            578999999999999999999999999999999999999997       4444555666665555443322   333456


Q ss_pred             HHHHHhhhccCCCCCCC----HHHHHHHHhhhccC
Q 040414          112 STISFACLQSNPKSRPT----MQYVSQEFLITRKT  142 (160)
Q Consensus       112 ~~l~~~cl~~dp~~Rps----~~~~~~~~~~~~~~  142 (160)
                      ++||.++|.+||.+|.-    +.+|.+|+||.+.+
T Consensus       365 kDLIr~LLvKdP~kRlg~~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  365 KDLIRKLLVKDPSKRLGSKRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             HHHHHHHhccChhhhhccccchHHhhcCccccCCC
Confidence            89999999999999998    99999999999843

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.87  E-value=2e-22  Score=135.02  Aligned_cols=130  Identities=25%  Similarity=0.406  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.+..+......    .....++..|++||.+... ..+.++|+||+|++++++++|..||...
T Consensus       131 ~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  210 (267)
T cd06610         131 GNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKY  210 (267)
T ss_pred             HhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCcccc
Confidence            4899999999999999998765543222    1234577889999998776 5788899999999999999999998633


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHH--HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKV--IQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...       ...........+ ......  ......+.+++.+||+.||++|||+++++.|+|+
T Consensus       211 ~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         211 PPM-------KVLMLTLQNDPP-SLETGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             Chh-------hhHHHHhcCCCC-CcCCccccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence            221       112222222111 111100  1112335789999999999999999999999986

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.87  E-value=3.5e-22  Score=135.23  Aligned_cols=128  Identities=25%  Similarity=0.353  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+..     ..++.++|+||+|+++|++++|..||...
T Consensus       153 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~  232 (286)
T cd06638         153 NNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADL  232 (286)
T ss_pred             HhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCC
Confidence            4899999999999999998865443323334457889999998753     33677899999999999999999998633


Q ss_pred             cccCCCCCchhhHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...       ...........+ ...+...   ...+.+++.+||+.||++|||++++++|+|+
T Consensus       233 ~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         233 HPM-------RALFKIPRNPPPTLHQPELW---SNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             chh-------HHHhhccccCCCcccCCCCc---CHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence            211       111111111111 0011111   1235789999999999999999999999985

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=4.9e-22  Score=132.21  Aligned_cols=127  Identities=22%  Similarity=0.323  Sum_probs=98.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|+++|.+|++||.|||+++.--.......+.+|||.|+|||++....++.+.|.|.+|+++|||++|+.||....    
T Consensus       297 ENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~d----  372 (516)
T KOG0690|consen  297 ENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKD----  372 (516)
T ss_pred             hhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccc----
Confidence            5899999999999999999865445556677899999999999999999999999999999999999999986221    


Q ss_pred             CCCchhh--HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           81 SSDPKIM--LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                         ....  +.-..+-+.|....+.       .+.|+..+|.+||.+|.     .+.+|.+|.||...
T Consensus       373 ---h~kLFeLIl~ed~kFPr~ls~e-------AktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v  430 (516)
T KOG0690|consen  373 ---HEKLFELILMEDLKFPRTLSPE-------AKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASV  430 (516)
T ss_pred             ---hhHHHHHHHhhhccCCccCCHH-------HHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccC
Confidence               1111  1222333444444332       35677889999999994     48999999999863

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.8e-22  Score=151.40  Aligned_cols=126  Identities=25%  Similarity=0.375  Sum_probs=91.6

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcccc--ccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~--~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      |+|++....|||+|||+++.+.........  ..-...|||||.+..+.++.++|+|||||++||+++ |..||.     
T Consensus       832 NCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifslG~~PY~-----  906 (1025)
T KOG1095|consen  832 NCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFSLGATPYP-----  906 (1025)
T ss_pred             heeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHHhCCCCCCC-----
Confidence            899999999999999999954433222211  123458999999999999999999999999999997 788886     


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        ..........+.... ..+.+..|+...   -++|..||+.+|++||++..+++.+..
T Consensus       907 --~~~n~~v~~~~~~gg-RL~~P~~CP~~l---y~lM~~CW~~~pe~RP~F~~i~~q~~~  960 (1025)
T KOG1095|consen  907 --SRSNFEVLLDVLEGG-RLDPPSYCPEKL---YQLMLQCWKHDPEDRPSFRTIVEQDPA  960 (1025)
T ss_pred             --CcchHHHHHHHHhCC-ccCCCCCCChHH---HHHHHHHccCChhhCccHHHHHhhhhh
Confidence              222333334333332 222334444443   368999999999999999999985443

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.5e-22  Score=137.15  Aligned_cols=132  Identities=20%  Similarity=0.204  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+........ .....++..|++||.+.+..++.++|+||+|+++|++++|..||......  
T Consensus       131 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~--  207 (285)
T cd05605         131 ENILLDDYGHIRISDLGLAVEIPEGET-IRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEK--  207 (285)
T ss_pred             HHEEECCCCCEEEeeCCCceecCCCCc-cccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchh--
Confidence            489999999999999999886543222 22345788999999998888888999999999999999999998632210  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                        .........+... ....+..   ....+.+++.+||+.||++||     ++++++.|+|+...
T Consensus       208 --~~~~~~~~~~~~~-~~~~~~~---~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05605         208 --VKREEVERRVKED-QEEYSEK---FSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTA  267 (285)
T ss_pred             --hHHHHHHHHhhhc-ccccCcc---cCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCC
Confidence              0111111112111 1111111   122347899999999999999     99999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.87  E-value=3.9e-22  Score=133.31  Aligned_cols=127  Identities=26%  Similarity=0.333  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+...+.++|+||+|++++++++|..||....    
T Consensus       139 ~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----  214 (265)
T cd08217         139 ANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN----  214 (265)
T ss_pred             HHEEEecCCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC----
Confidence            4899999999999999998876544332334567888999999988878888999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          .....+.+........+...   ...+.+++.+||+.+|++||+++++++|+|+
T Consensus       215 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         215 ----QLQLASKIKEGKFRRIPYRY---SSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             ----HHHHHHHHhcCCCCCCcccc---CHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence                11222222222222222222   2235789999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.87  E-value=4.8e-23  Score=142.14  Aligned_cols=131  Identities=21%  Similarity=0.248  Sum_probs=91.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccc------cCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAY------TMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~------~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+++.++.+||+|||++.......... ....+++.|+|||++.      ...++.++|+||+|+++|+|++|..||.
T Consensus       131 ~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~  210 (330)
T cd05601         131 ENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFH  210 (330)
T ss_pred             HheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCC
Confidence            59999999999999999998665432221 2245788999999986      3446788999999999999999999986


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ...       .................+. .......+.+++.+||. +|++||++++++.|+|+..
T Consensus       211 ~~~-------~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~  268 (330)
T cd05601         211 EGT-------SAKTYNNIMNFQRFLKFPE-DPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSK  268 (330)
T ss_pred             CCC-------HHHHHHHHHcCCCccCCCC-CCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCC
Confidence            322       1122222221111111110 01112235778889997 9999999999999999875

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.87  E-value=3.9e-22  Score=136.44  Aligned_cols=135  Identities=24%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+. .++.++|+||+|+++|++++|.+||...... 
T Consensus       137 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~~~~-  215 (309)
T cd07845         137 SNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGKSEI-  215 (309)
T ss_pred             HHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence            48999999999999999998765432222223356779999998653 4678899999999999999999998632211 


Q ss_pred             CCCCchhhHHHhhh---------------------cCCCC-CCC---HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           80 SSSDPKIMLIDVLD---------------------QRLPP-PVD---QKVIQDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        80 ~~~~~~~~~~~~~~---------------------~~~~~-~~~---~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                            ........                     ..... +..   .........+.+++.+||+.||++|||++++++
T Consensus       216 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~  289 (309)
T cd07845         216 ------EQLDLIIQLLGTPNESIWPGFSDLPLVGKFTLPKQPYNNLKHKFPWLSEAGLRLLNFLLMYDPKKRATAEEALE  289 (309)
T ss_pred             ------HHHHHHHHhcCCCChhhchhhhcccccccccccCCCCCchHHhccccCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence                  11100000                     00000 000   000011334578999999999999999999999


Q ss_pred             HHhhhccC
Q 040414          135 EFLITRKT  142 (160)
Q Consensus       135 ~~~~~~~~  142 (160)
                      |+|+....
T Consensus       290 h~~f~~~~  297 (309)
T cd07845         290 SSYFKEKP  297 (309)
T ss_pred             ChhhccCC
Confidence            99998654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.87  E-value=8.1e-23  Score=138.20  Aligned_cols=138  Identities=18%  Similarity=0.117  Sum_probs=88.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||++..............+++.|+|||.+.+. .++.++|+||+|++++++++|.+||.......
T Consensus       130 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~~~~~~~~~~  209 (285)
T cd07861         130 QNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKPLFHGDSEID  209 (285)
T ss_pred             HHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            48999999999999999987654332222334567789999988654 35778999999999999999999986322100


Q ss_pred             C-------CCCchhhHH------HhhhcCCC---CCC-CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLI------DVLDQRLP---PPV-DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~------~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       .........      .......+   ... ..........+.+++.+||+.||++|||+++++.|+|+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         210 QLFRIFRILGTPTEDVWPGVTSLPDYKNTFPKWKKGSLRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             HHHHHHHHhCCCChhhhhcchhhHHHHhhccccCcchhHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            0       000000000      00000000   000 00000012345789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.87  E-value=3.3e-22  Score=139.88  Aligned_cols=133  Identities=22%  Similarity=0.282  Sum_probs=90.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC----CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV----MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~----~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||++........ ......||+.|+|||++....    ++.++|+||+|+++|+|++|.+||...
T Consensus       171 ~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         171 DNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             HHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            589999999999999999986543222 223456899999999986542    677899999999999999999999622


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhcc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITRK  141 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~~  141 (160)
                      .       .................+. .......+.+++..||..++.+  |++++++++|+|+...
T Consensus       251 ~-------~~~~~~~i~~~~~~~~~p~-~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         251 S-------LVGTYSKIMDHKNSLNFPE-DVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             C-------HHHHHHHHHhCCcccCCCC-cccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence            1       1222222222211111111 1111223467888888755543  8999999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=1.5e-22  Score=141.33  Aligned_cols=132  Identities=20%  Similarity=0.243  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--------------------------------------ccccccccccccCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--------------------------------------NRTLLAGTYGYIAPE   42 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~Pe   42 (160)
                      +|||++.++.++|+|||+++.+.....                                      ......||+.|+|||
T Consensus       130 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  209 (364)
T cd05599         130 DNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPE  209 (364)
T ss_pred             HHeEECCCCCEEEeecccceeccccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHH
Confidence            489999999999999999875432110                                      001235889999999


Q ss_pred             ccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccC
Q 040414           43 LAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSN  122 (160)
Q Consensus        43 ~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~d  122 (160)
                      ++....++.++|+||+||++|+|++|.+||....       .................+... .....+.+++.+|+. +
T Consensus       210 ~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~~-~~s~~~~~li~~ll~-~  280 (364)
T cd05599         210 VFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN-------PQETYRKIINWKETLQFPDEV-PLSPEAKDLIKRLCC-E  280 (364)
T ss_pred             HHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC-------HHHHHHHHHcCCCccCCCCCC-CCCHHHHHHHHHHcc-C
Confidence            9988888999999999999999999999986222       122222222211111111100 112234678888886 8


Q ss_pred             CCCCCC---HHHHHHHHhhhcc
Q 040414          123 PKSRPT---MQYVSQEFLITRK  141 (160)
Q Consensus       123 p~~Rps---~~~~~~~~~~~~~  141 (160)
                      |.+|++   +++++.|+|+...
T Consensus       281 p~~R~~~~~~~~ll~h~~~~~~  302 (364)
T cd05599         281 AERRLGNNGVNEIKSHPFFKGV  302 (364)
T ss_pred             HhhcCCCCCHHHHhcCCCcCCC
Confidence            999998   9999999999763

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.87  E-value=3.2e-22  Score=135.53  Aligned_cols=131  Identities=21%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++........ .....++..|+|||++.+..++.++|+||+|+++|++++|..||......  
T Consensus       131 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~--  207 (285)
T cd05630         131 ENILLDDHGHIRISDLGLAVHVPEGQT-IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK--  207 (285)
T ss_pred             HHEEECCCCCEEEeeccceeecCCCcc-ccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCcc--
Confidence            489999999999999999876443222 12345788999999998888889999999999999999999999632110  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                        ............ .........   ...+.+++.+||+.||++|||     +++++.|+|+.+
T Consensus       208 --~~~~~~~~~~~~-~~~~~~~~~---~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~  266 (285)
T cd05630         208 --IKREEVERLVKE-VQEEYSEKF---SPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQ  266 (285)
T ss_pred             --chHHHHHhhhhh-hhhhcCccC---CHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhc
Confidence              000111111110 111111111   122478999999999999999     999999999986

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.87  E-value=7.2e-22  Score=131.66  Aligned_cols=127  Identities=26%  Similarity=0.374  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+..............+++.|.+||.+.+...+.++|+||+|++++++++|..||..      
T Consensus       130 ~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~------  203 (256)
T cd08221         130 LNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDA------  203 (256)
T ss_pred             HhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCC------
Confidence            48999999999999999988664443233345578899999999887778889999999999999999999852      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                       ................. ...   .....+.+++.+||..+|++||++++++.++|+
T Consensus       204 -~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         204 -TNPLNLVVKIVQGNYTP-VVS---VYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             -CCHHHHHHHHHcCCCCC-Ccc---ccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence             11222222222222221 111   112235789999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.86  E-value=7.6e-22  Score=133.50  Aligned_cols=130  Identities=22%  Similarity=0.180  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+........ .....++..|++||.+.+...+.++|+||+|+++++|++|.+||......  
T Consensus       136 ~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~--  212 (287)
T cd07838         136 QNILVTSDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEA--  212 (287)
T ss_pred             hhEEEccCCCEEEeccCcceeccCCcc-cccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChH--
Confidence            589999999999999999876543322 12234677899999998888888999999999999999999988632211  


Q ss_pred             CCCchhhHHHhh----------------------hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVL----------------------DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           .......                      ..................+.+++.+||+.||++||++++++.|+|+
T Consensus       213 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         213 -----DQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             -----HHHHHHHHHcCCCChHhcCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence                 1111000                      0111111111112223456789999999999999999999999985

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.86  E-value=8.8e-22  Score=136.24  Aligned_cols=129  Identities=25%  Similarity=0.326  Sum_probs=90.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++.+......  .....++..|+|||.+.+..++.++|+||+||+++++++ |..||.... 
T Consensus       202 ~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~-  280 (337)
T cd05054         202 RNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ-  280 (337)
T ss_pred             ceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCC-
Confidence            5899999999999999999865332211  122334567999999988888999999999999999997 999985211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            ........+........+...   ...+.+++.+||+.+|++||+++++++++-..
T Consensus       281 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~cl~~~p~~RPs~~ell~~l~~~  333 (337)
T cd05054         281 ------IDEEFCRRLKEGTRMRAPEYA---TPEIYSIMLDCWHNNPEDRPTFSELVEILGDL  333 (337)
T ss_pred             ------ccHHHHHHHhccCCCCCCccC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                  111122222221111111111   12357889999999999999999999998643

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.86  E-value=6.5e-22  Score=132.78  Aligned_cols=129  Identities=22%  Similarity=0.405  Sum_probs=88.7

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++. ++.++|+|||.+..............++..|++||.+....  ++.++|+||+|++++++++|..||.....
T Consensus       137 ~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~  216 (268)
T cd06624         137 DNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGE  216 (268)
T ss_pred             HHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccC
Confidence            4899976 67899999999876543333233345778899999986543  67789999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ..............+..+....   ..+.+++.+||+.+|++|||+++++.|+|+
T Consensus       217 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         217 ------PQAAMFKVGMFKIHPEIPESLS---AEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             ------hhhhHhhhhhhccCCCCCcccC---HHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence                  0111111111111111221111   235789999999999999999999999985

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.86  E-value=3.7e-22  Score=136.08  Aligned_cols=139  Identities=16%  Similarity=0.130  Sum_probs=90.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+.+. .++.++|+||+|+++|+|++|.+||.......
T Consensus       133 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~  212 (301)
T cd07873         133 QNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEE  212 (301)
T ss_pred             HHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            48999999999999999987544333222334567889999988654 35778999999999999999999986322100


Q ss_pred             C-------CCCc-hhhHHHhhh------cCCCCCCCHHH-----HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDP-KIMLIDVLD------QRLPPPVDQKV-----IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~-~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...+ .........      ...+ .....+     ......+.+++.+||+.||.+|||+++++.|+|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~  291 (301)
T cd07873         213 QLHFIFRILGTPTEETWPGILSNEEFKSYNYP-KYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHC  291 (301)
T ss_pred             HHHHHHHHcCCCChhhchhhhccccccccccC-ccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence            0       0000 000000000      0000 000000     001223578999999999999999999999999975

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.86  E-value=4.8e-22  Score=134.44  Aligned_cols=134  Identities=25%  Similarity=0.306  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+ ..++.++|+||+|++++++++|.+||.......
T Consensus       129 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p~~~~~~~~  208 (286)
T cd07847         129 ENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPLWPGKSDVD  208 (286)
T ss_pred             hhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCCCCCCChHH
Confidence            5899999999999999999876543322333456778999999875 346788999999999999999999986332110


Q ss_pred             CCCCchhhHHHhhh------------------cCCCCCC--C---HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPKIMLIDVLD------------------QRLPPPV--D---QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~~~~~~~~~------------------~~~~~~~--~---~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .    .........                  ...+.+.  .   .........+.+|+.+||+.+|++||++.+++.|+
T Consensus       209 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~  284 (286)
T cd07847         209 Q----LYLIRKTLGDLIPRHQQIFSTNQFFKGLSIPEPETREPLESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHP  284 (286)
T ss_pred             H----HHHHHHHhCCCChHHhhhcccccccccccCCCcccccCHHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcCC
Confidence            0    000000000                  0000000  0   00111233467899999999999999999999999


Q ss_pred             hh
Q 040414          137 LI  138 (160)
Q Consensus       137 ~~  138 (160)
                      ||
T Consensus       285 ~f  286 (286)
T cd07847         285 YF  286 (286)
T ss_pred             CC
Confidence            86

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.86  E-value=6e-22  Score=143.24  Aligned_cols=137  Identities=20%  Similarity=0.184  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCc-ccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP-RDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~-~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++.+..... ......|+..|++||++.+..++.++||||+||++|+|++|..+ +....  
T Consensus       296 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~~~p~~~~~--  373 (501)
T PHA03210        296 ENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHDFCPIGDGG--  373 (501)
T ss_pred             HHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCccCCC--
Confidence            489999999999999999987654322 22235689999999999988888999999999999999998654 32110  


Q ss_pred             CCCCCchhhHHHhhhc------CCC-------------------CCCCHHHH--HHHHHHHHHHHhhhccCCCCCCCHHH
Q 040414           79 SSSSDPKIMLIDVLDQ------RLP-------------------PPVDQKVI--QDILLASTISFACLQSNPKSRPTMQY  131 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~------~~~-------------------~~~~~~~~--~~~~~~~~l~~~cl~~dp~~Rps~~~  131 (160)
                         ......+.+.+..      ..+                   ........  .....+.+++.+||+.||.+|||+.+
T Consensus       374 ---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~li~kmL~~DP~~Rpsa~e  450 (501)
T PHA03210        374 ---GKPGKQLLKIIDSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVPPLIRNLGLPADFEYPLVKMLTFDWHLRPGAAE  450 (501)
T ss_pred             ---CCHHHHHHHHHHhcccChhhcCCcHHHHHHHhhhhhcccCccchhhHHHhcCCChHHHHHHHHHhccCcccCcCHHH
Confidence               0111111111100      000                   00000000  01123466788999999999999999


Q ss_pred             HHHHHhhhccC
Q 040414          132 VSQEFLITRKT  142 (160)
Q Consensus       132 ~~~~~~~~~~~  142 (160)
                      ++.|+||....
T Consensus       451 lL~hp~f~~~~  461 (501)
T PHA03210        451 LLALPLFSAEE  461 (501)
T ss_pred             HhhChhhhcCC
Confidence            99999997643

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.86  E-value=2.9e-22  Score=139.88  Aligned_cols=133  Identities=21%  Similarity=0.252  Sum_probs=87.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----------------------------------ccccccccccccCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----------------------------------NRTLLAGTYGYIAPELAY   45 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~Pe~~~   45 (160)
                      +|||++.++.+||+|||+++.......                                   ......||+.|+|||++.
T Consensus       130 ~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~  209 (363)
T cd05628         130 DNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFM  209 (363)
T ss_pred             HHeEECCCCCEEEeeccCcccccccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHc
Confidence            589999999999999999875432100                                   011346899999999998


Q ss_pred             cCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhh--ccCC
Q 040414           46 TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL--QSNP  123 (160)
Q Consensus        46 ~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl--~~dp  123 (160)
                      +..++.++|+||+||++|+|++|..||...       .................++... .....+.+++.+++  ..++
T Consensus       210 ~~~~~~~~DvwSlGvil~ell~G~~Pf~~~-------~~~~~~~~i~~~~~~~~~p~~~-~~s~~~~~li~~l~~~~~~r  281 (363)
T cd05628         210 QTGYNKLCDWWSLGVIMYEMLIGYPPFCSE-------TPQETYKKVMNWKETLIFPPEV-PISEKAKDLILRFCCEWEHR  281 (363)
T ss_pred             CCCCCCchhhhhhHHHHHHHHhCCCCCCCC-------CHHHHHHHHHcCcCcccCCCcC-CCCHHHHHHHHHHcCChhhc
Confidence            888899999999999999999999999622       2222222222211111111000 01112355655533  3344


Q ss_pred             CCCCCHHHHHHHHhhhcc
Q 040414          124 KSRPTMQYVSQEFLITRK  141 (160)
Q Consensus       124 ~~Rps~~~~~~~~~~~~~  141 (160)
                      ..||+++++++|+|+.+.
T Consensus       282 ~~r~~~~ei~~hp~f~~~  299 (363)
T cd05628         282 IGAPGVEEIKTNPFFEGV  299 (363)
T ss_pred             CCCCCHHHHhCCCCCCCC
Confidence            567999999999999763

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-22  Score=147.40  Aligned_cols=131  Identities=31%  Similarity=0.489  Sum_probs=96.4

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcc-ccccc--cccccCCcccccCCCCCCcCeeehHHHHHHHH-hcCCccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNR-TLLAG--TYGYIAPELAYTMVMTEKCDVYSFGVVTLEVL-MGKHPRDLLSS   77 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~--~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~-~g~~~~~~~~~   77 (160)
                      |||++++..+|++|||++|.+.++.... .+..|  +..|+|||++...+++.++|+||+|+++||++ .|..||=+   
T Consensus       761 NILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWd---  837 (996)
T KOG0196|consen  761 NILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD---  837 (996)
T ss_pred             heeeccceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccc---
Confidence            8999999999999999999876654322 22223  44899999999999999999999999999988 48777621   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                         .........-....++|+|..  |+..   +=.||+.||++|...||.+++++.++-..-+++
T Consensus       838 ---mSNQdVIkaIe~gyRLPpPmD--CP~a---L~qLMldCWqkdR~~RP~F~qiV~~lDklIrnP  895 (996)
T KOG0196|consen  838 ---MSNQDVIKAIEQGYRLPPPMD--CPAA---LYQLMLDCWQKDRNRRPKFAQIVSTLDKLIRNP  895 (996)
T ss_pred             ---cchHHHHHHHHhccCCCCCCC--CcHH---HHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCc
Confidence               111222222233445555543  3333   246888999999999999999999988776554

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=6.4e-22  Score=133.59  Aligned_cols=131  Identities=24%  Similarity=0.370  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+..     ..++.++|+||+|+++|++++|.+||...
T Consensus       132 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         132 GNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             hhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccC
Confidence            4899999999999999987654433222233457888999998752     33567899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .       .............+. ..+...   ...+.+++.+||+.+|++||+++++++|+|+...
T Consensus       212 ~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         212 N-------PMRVLLKILKSEPPTLDQPSKW---SSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             C-------HHHHHHHHhcCCCCCcCCcccC---CHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence            2       111222222111111 111111   1235789999999999999999999999999875

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.86  E-value=1.2e-21  Score=132.67  Aligned_cols=134  Identities=25%  Similarity=0.372  Sum_probs=95.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+..++.++|+||+|+++|++++|..||.....   
T Consensus       145 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~---  221 (286)
T cd06614         145 DNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP---  221 (286)
T ss_pred             hhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH---
Confidence            58999999999999999876544332222334467789999998887788899999999999999999999862221   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                          ............+. ... .......+.+++..||+.+|..|||++++++|+|+.....
T Consensus       222 ----~~~~~~~~~~~~~~-~~~-~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~  278 (286)
T cd06614         222 ----LRALFLITTKGIPP-LKN-PEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKKACP  278 (286)
T ss_pred             ----HHHHHHHHhcCCCC-Ccc-hhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhccCc
Confidence                11111111111111 111 1111234578999999999999999999999999998443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.86  E-value=4.7e-22  Score=137.34  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||++......... .....|++.|+|||++..     ..++.++|+||+|+++|+|++|..||..
T Consensus       131 ~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~  210 (332)
T cd05623         131 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (332)
T ss_pred             HHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCC
Confidence            4899999999999999998754333222 223468999999998862     3467889999999999999999999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCC--CCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNP--KSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp--~~Rps~~~~~~~~~~~~  140 (160)
                      ..       ...............+.+.........+.+++.+|+..++  ..|++++++++|+|+..
T Consensus       211 ~~-------~~~~~~~i~~~~~~~~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~  271 (332)
T cd05623         211 ES-------LVETYGKIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTG  271 (332)
T ss_pred             CC-------HHHHHHHHhCCCccccCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCC
Confidence            22       1222222222211111111111122335678888775544  44789999999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.86  E-value=1.1e-21  Score=131.22  Aligned_cols=133  Identities=26%  Similarity=0.390  Sum_probs=96.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.....+.++|+||+|+++|++++|..||.....   
T Consensus       129 ~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~---  205 (264)
T cd06623         129 SNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQ---  205 (264)
T ss_pred             HHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccc---
Confidence            48999999999999999988765444333344567789999999888788899999999999999999999863321   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                        .........+............  ....+.+++.+||+.+|+.||+++++++|+|+..
T Consensus       206 --~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~  261 (264)
T cd06623         206 --PSFFELMQAICDGPPPSLPAEE--FSPEFRDFISACLQKDPKKRPSAAELLQHPFIKK  261 (264)
T ss_pred             --cCHHHHHHHHhcCCCCCCCccc--CCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHh
Confidence              0111222222222222222210  1223578999999999999999999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.86  E-value=1.6e-21  Score=130.78  Aligned_cols=130  Identities=21%  Similarity=0.270  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+...+.++|+||+|+++|++++|..||....    
T Consensus       135 ~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~----  210 (267)
T cd08228         135 ANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK----  210 (267)
T ss_pred             HHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCcccc----
Confidence            4899999999999999998865543322233457778999999988778889999999999999999999975211    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        .........+.....++....  .....+.+++.+||+.+|++||+++++++.+..
T Consensus       211 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~  264 (267)
T cd08228         211 --MNLFSLCQKIEQCDYPPLPTE--HYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQ  264 (267)
T ss_pred             --ccHHHHHHHHhcCCCCCCChh--hcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHH
Confidence              111222222222222222211  122335789999999999999999999988754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.86  E-value=4.7e-22  Score=137.13  Aligned_cols=142  Identities=23%  Similarity=0.199  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCC---CccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||.+.......   .......++..|++||.+.+. ..+.++|+||+|++++++++|.+||....
T Consensus       132 ~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~  211 (330)
T cd07834         132 SNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRD  211 (330)
T ss_pred             HHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCC
Confidence            48999999999999999998765432   122234567789999999877 67889999999999999999999986322


Q ss_pred             ccCC-------CCC---------chhhHHHhhh---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSS-------SSD---------PKIMLIDVLD---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~-------~~~---------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ....       ...         ..........   .....+...........+.+++.+||+.+|++|||+++++.|+|
T Consensus       212 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~  291 (330)
T cd07834         212 YIDQLNLIVEVLGTPSEEDLKFITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPY  291 (330)
T ss_pred             HHHHHHHHHHhcCCCChhHhhhccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCcc
Confidence            1000       000         0000000000   00000000000112234578999999999999999999999999


Q ss_pred             hhccC
Q 040414          138 ITRKT  142 (160)
Q Consensus       138 ~~~~~  142 (160)
                      +....
T Consensus       292 ~~~~~  296 (330)
T cd07834         292 LAQLH  296 (330)
T ss_pred             HHhhc
Confidence            98643

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.86  E-value=1e-21  Score=131.41  Aligned_cols=131  Identities=24%  Similarity=0.319  Sum_probs=95.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+....... ......++..|++||.+....++.++|+||+|+++|++++|..||.....   
T Consensus       122 ~nilv~~~~~~~l~df~~~~~~~~~~-~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---  197 (262)
T cd05572         122 ENLLLDSNGYVKLVDFGFAKKLKSGQ-KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDE---  197 (262)
T ss_pred             HHEEEcCCCCEEEeeCCcccccCccc-ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCC---
Confidence            48999999999999999988665432 22234567789999998877788899999999999999999999863221   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                        ..................+...   ...+.+++.+||+.+|++||+     ++++++|+|+..
T Consensus       198 --~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~  257 (262)
T cd05572         198 --DPMEIYNDILKGNGKLEFPNYI---DKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNG  257 (262)
T ss_pred             --CHHHHHHHHhccCCCCCCCccc---CHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhC
Confidence              1122222222112222222222   223578999999999999999     999999999975

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.86  E-value=9.9e-22  Score=136.76  Aligned_cols=139  Identities=21%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.++...... ......++..|++||.+.+..++.++|+||+|+++++|++|..||........
T Consensus       147 ~Nil~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~  225 (353)
T cd07850         147 SNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPGTDHIDQ  225 (353)
T ss_pred             HHEEECCCCCEEEccCccceeCCCCC-CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCCCCHHHH
Confidence            48999999999999999998654322 22234567889999999888889999999999999999999999863221000


Q ss_pred             -------CCCchhhH--------HHhhhcCCCC---CC-------------CHHHHHHHHHHHHHHHhhhccCCCCCCCH
Q 040414           81 -------SSDPKIML--------IDVLDQRLPP---PV-------------DQKVIQDILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        81 -------~~~~~~~~--------~~~~~~~~~~---~~-------------~~~~~~~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                             ...+....        ..........   +.             ..........+.+++.+||+.||++|||+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  305 (353)
T cd07850         226 WNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISV  305 (353)
T ss_pred             HHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHHHHHcCCChhhCcCH
Confidence                   00000000        0000000000   00             00000112235789999999999999999


Q ss_pred             HHHHHHHhhhc
Q 040414          130 QYVSQEFLITR  140 (160)
Q Consensus       130 ~~~~~~~~~~~  140 (160)
                      ++++.|+|+..
T Consensus       306 ~eiL~~~~~~~  316 (353)
T cd07850         306 DDALQHPYINV  316 (353)
T ss_pred             HHHhcChhHhh
Confidence            99999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.86  E-value=3.9e-22  Score=134.87  Aligned_cols=138  Identities=19%  Similarity=0.180  Sum_probs=88.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+.. ++.++|+||+|++++++++|..||.......
T Consensus       129 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~  208 (284)
T cd07860         129 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID  208 (284)
T ss_pred             HHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Confidence            489999999999999999876543332233344677899999887654 4778999999999999999999985321100


Q ss_pred             C-------CCCchhhHH----H--hhhcCCCCCCC---HH-HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLI----D--VLDQRLPPPVD---QK-VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~----~--~~~~~~~~~~~---~~-~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+.....    .  ......+....   .. .......+.+++.+||+.||++|||+++++.|+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         209 QLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPKWARQDFSKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             HHHHHHHHhCCCChhhhhhhhHHHHHHhhcccccccCHHHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            0       000000000    0  00000000000   00 00112235789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.86  E-value=2.8e-21  Score=132.12  Aligned_cols=129  Identities=26%  Similarity=0.360  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||++......    ....+++.|++||.+.   ...++.++|+||+|+++|++++|.+||.....
T Consensus       144 ~nIl~~~~~~~kL~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~  219 (307)
T cd06607         144 GNILLTEPGTVKLADFGSASLVSPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA  219 (307)
T ss_pred             ccEEECCCCCEEEeecCcceecCCC----CCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH
Confidence            5899999999999999988754322    2245677899999874   34467889999999999999999999852211


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                             ........ ....+......  ....+.+++.+||..+|++||++.+++.|+|+....+
T Consensus       220 -------~~~~~~~~-~~~~~~~~~~~--~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~~  275 (307)
T cd06607         220 -------MSALYHIA-QNDSPTLSSND--WSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRERP  275 (307)
T ss_pred             -------HHHHHHHh-cCCCCCCCchh--hCHHHHHHHHHHhcCChhhCcCHHHHhcChhhcccCC
Confidence                   11111111 11111111111  1223578999999999999999999999999988664

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.86  E-value=7.9e-23  Score=136.42  Aligned_cols=133  Identities=26%  Similarity=0.403  Sum_probs=92.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-cCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............++..|.|||.+. +...+.++|+||+|+++++|++|..||.....  
T Consensus       127 ~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~--  204 (260)
T PF00069_consen  127 ENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNS--  204 (260)
T ss_dssp             GGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSH--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            599999999999999999876433333344456788999999988 66778899999999999999999999863300  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        .................... ........+.+++.+||+.||++||+++++++|+|+
T Consensus       205 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  205 --DDQLEIIEKILKRPLPSSSQ-QSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             --HHHHHHHHHHHHTHHHHHTT-SHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             --hhhhhhhhhccccccccccc-ccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence              00111111111111110000 000001346789999999999999999999999996

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.86  E-value=1.1e-21  Score=131.58  Aligned_cols=127  Identities=24%  Similarity=0.376  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.++|+|||.++.......      ......++..|++||.+.+..++.++|+||+|++++++++|..||..
T Consensus       135 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~  214 (267)
T cd06628         135 ANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPD  214 (267)
T ss_pred             HHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCC
Confidence            489999999999999999876642211      11123467789999999888788889999999999999999999863


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...       ......... ...+..+...   ...+.+++.+||+.||++||++.++++|+|+
T Consensus       215 ~~~-------~~~~~~~~~-~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         215 CTQ-------LQAIFKIGE-NASPEIPSNI---SSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             ccH-------HHHHHHHhc-cCCCcCCccc---CHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence            221       111111111 1111111111   2235789999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.86  E-value=9e-22  Score=137.77  Aligned_cols=132  Identities=20%  Similarity=0.271  Sum_probs=89.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC----CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV----MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~----~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||+++....... ......||+.|+|||++....    ++.++|+||+||++|+|++|..||...
T Consensus       171 ~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         171 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             HHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            489999999999999999986543222 223456899999999986542    678899999999999999999998622


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~  140 (160)
                      .       ...............+.+. .......+.+++..||..++.+  |++++++++|+|+..
T Consensus       251 ~-------~~~~~~~i~~~~~~~~~~~-~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~  309 (371)
T cd05622         251 S-------LVGTYSKIMNHKNSLTFPD-DNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKN  309 (371)
T ss_pred             C-------HHHHHHHHHcCCCcccCCC-cCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCC
Confidence            1       1222222222111111111 1112223477888999844433  789999999999976

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.86  E-value=1.1e-21  Score=133.27  Aligned_cols=135  Identities=20%  Similarity=0.324  Sum_probs=95.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+....++.++|+||+|++++++++|..||.....   
T Consensus       145 ~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~---  221 (292)
T cd06657         145 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP---  221 (292)
T ss_pred             HHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH---
Confidence            48999999999999999887554332222334577889999998877788899999999999999999999852111   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                          . .....+....+..... .......+.+++.+||+.+|.+||++++++.|+|+......
T Consensus       222 ----~-~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~~~  279 (292)
T cd06657         222 ----L-KAMKMIRDNLPPKLKN-LHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP  279 (292)
T ss_pred             ----H-HHHHHHHhhCCcccCC-cccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccCCC
Confidence                1 1111111111111100 00112234678999999999999999999999999987753

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.86  E-value=6e-22  Score=139.19  Aligned_cols=129  Identities=25%  Similarity=0.332  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCC-----------------------------------------------Ccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-----------------------------------------------SNRTLLA   33 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-----------------------------------------------~~~~~~~   33 (160)
                      +|||++.++.+||+|||++.......                                               .......
T Consensus       130 ~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (382)
T cd05625         130 DNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLV  209 (382)
T ss_pred             HHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence            58999999999999999875321000                                               0011245


Q ss_pred             ccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhh--cCCCCCCCHHHHHHHHHH
Q 040414           34 GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLPPPVDQKVIQDILLA  111 (160)
Q Consensus        34 ~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  111 (160)
                      ||+.|+|||++.+..++.++|+||+||++|+|++|.+||....       ..........  .....+....   ....+
T Consensus       210 gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~~---~s~~~  279 (382)
T cd05625         210 GTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT-------PLETQMKVINWQTSLHIPPQAK---LSPEA  279 (382)
T ss_pred             cCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC-------HHHHHHHHHccCCCcCCCCccc---CCHHH
Confidence            8899999999988888999999999999999999999996322       1222222221  1111111111   11223


Q ss_pred             HHHHHhhhccCCCCCCC---HHHHHHHHhhhc
Q 040414          112 STISFACLQSNPKSRPT---MQYVSQEFLITR  140 (160)
Q Consensus       112 ~~l~~~cl~~dp~~Rps---~~~~~~~~~~~~  140 (160)
                      .+++.+++ .+|.+|++   +++++.|+|+..
T Consensus       280 ~~li~~l~-~~p~~R~~~~~~~ei~~hp~f~~  310 (382)
T cd05625         280 SDLIIKLC-RGPEDRLGKNGADEIKAHPFFKT  310 (382)
T ss_pred             HHHHHHHc-cCHhHcCCCCCHHHHhcCCCcCC
Confidence            56666655 48999987   999999999976

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.86  E-value=4.6e-22  Score=134.58  Aligned_cols=137  Identities=26%  Similarity=0.338  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++.......  .....++..|++||.+.+...+.++|+||+|++++++++|..||........
T Consensus       133 ~nil~~~~~~~~l~d~gl~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~  210 (284)
T cd06620         133 SNILVNSRGQIKLCDFGVSGELINSI--ADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDD  210 (284)
T ss_pred             HHEEECCCCcEEEccCCcccchhhhc--cCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhh
Confidence            48999999999999999886543221  1234578889999998887788899999999999999999999874332110


Q ss_pred             CCCch----hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPK----IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .....    ......... .++.....  .....+.+++.+||+.||++|||+++++.++|+....
T Consensus       211 ~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         211 GQDDPMGILDLLQQIVQE-PPPRLPSS--DFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             hhhhhhHHHHHHHHHhhc-cCCCCCch--hcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence            00001    111111111 11111111  1122357899999999999999999999999887643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.86  E-value=1.5e-21  Score=136.72  Aligned_cols=128  Identities=24%  Similarity=0.329  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....++..|+|||++....++.++|+||+|+++|+|++ |..||.... 
T Consensus       241 ~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~-  319 (374)
T cd05106         241 RNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGIL-  319 (374)
T ss_pred             heEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCcccc-
Confidence            5999999999999999998765432211  112224557999999988888999999999999999997 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            .................+...   ...+.+++.+||+.||++|||++++++.+..
T Consensus       320 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~  371 (374)
T cd05106         320 ------VNSKFYKMVKRGYQMSRPDFA---PPEIYSIMKMCWNLEPTERPTFSQISQLIQR  371 (374)
T ss_pred             ------ccHHHHHHHHcccCccCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence                  111222222222221111111   1235789999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.86  E-value=7.1e-22  Score=136.72  Aligned_cols=141  Identities=22%  Similarity=0.158  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............++..|++||.+.. ..++.++|+||+|++++++++|.+||.......
T Consensus       137 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~  216 (337)
T cd07858         137 SNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVH  216 (337)
T ss_pred             HHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHH
Confidence            4899999999999999998865433222233456778999998765 357889999999999999999999985321100


Q ss_pred             ---------CCCC-------chhhHHHhhhc---CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 ---------SSSD-------PKIMLIDVLDQ---RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ---------~~~~-------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                               ....       ...........   ................+.+++.+||+.+|++|||+++++.|+|+..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~  296 (337)
T cd07858         217 QLKLITELLGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLAS  296 (337)
T ss_pred             HHHHHHHHhCCCChHHhhhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhh
Confidence                     0000       00000000000   0000000011112334578999999999999999999999999986


Q ss_pred             c
Q 040414          141 K  141 (160)
Q Consensus       141 ~  141 (160)
                      .
T Consensus       297 ~  297 (337)
T cd07858         297 L  297 (337)
T ss_pred             h
Confidence            3

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.86  E-value=1.8e-21  Score=132.06  Aligned_cols=132  Identities=20%  Similarity=0.160  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+. .++.++|+||+|++++++++|..||...... 
T Consensus       132 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~~~-  210 (291)
T cd07870         132 QNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVSDV-  210 (291)
T ss_pred             HHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCchhH-
Confidence            58999999999999999987544332222334467889999998754 3677899999999999999999998632210 


Q ss_pred             CCCCchhhHHHhhh------------------------cCCCCCCCHH---HHHHHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           80 SSSDPKIMLIDVLD------------------------QRLPPPVDQK---VIQDILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        80 ~~~~~~~~~~~~~~------------------------~~~~~~~~~~---~~~~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                           ...+.....                        ....+.....   .......+.+++.+|+..||.+|||++++
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dp~~R~t~~~~  285 (291)
T cd07870         211 -----FEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPCKPQQLRVVWKRLSRPPKAEDLASQMLMMFPKDRISAQDA  285 (291)
T ss_pred             -----HHHHHHHHHHcCCCChhhhhhhhhcccccchhccccCCcchhhhccccCCChHHHHHHHHHhCcCcccCcCHHHH
Confidence                 001000000                        0000000000   00012345789999999999999999999


Q ss_pred             HHHHhh
Q 040414          133 SQEFLI  138 (160)
Q Consensus       133 ~~~~~~  138 (160)
                      +.|+|+
T Consensus       286 l~h~~~  291 (291)
T cd07870         286 LLHPYF  291 (291)
T ss_pred             hcCCCC
Confidence            999986

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.86  E-value=1.4e-21  Score=133.06  Aligned_cols=145  Identities=23%  Similarity=0.186  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............+++.|.+||.+.+. .++.++|+||+|++++++++|.++|.......
T Consensus       131 ~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~~~~~~~~~~~  210 (298)
T cd07841         131 NNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRVPFLPGDSDID  210 (298)
T ss_pred             hhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCCccccCCccHH
Confidence            58999999999999999998765443333333456789999987543 45778999999999999999988775322110


Q ss_pred             C-------CCCchhhHH-------HhhhcCCCCCC--CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           80 S-------SSDPKIMLI-------DVLDQRLPPPV--DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        80 ~-------~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      .       ...+.....       .........+.  ..........+.+++.+||..||++|||+++++.|+|+.+...
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~  290 (298)
T cd07841         211 QLGKIFEALGTPTEENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPA  290 (298)
T ss_pred             HHHHHHHHcCCCchhhhhhcccccccccccccCCcchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCC
Confidence            0       000000000       00000000000  0001111234678999999999999999999999999998664


Q ss_pred             cc
Q 040414          144 LV  145 (160)
Q Consensus       144 ~~  145 (160)
                      ..
T Consensus       291 ~~  292 (298)
T cd07841         291 PT  292 (298)
T ss_pred             CC
Confidence            44

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.86  E-value=2.6e-21  Score=135.63  Aligned_cols=128  Identities=23%  Similarity=0.323  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....++..|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       243 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~-  321 (375)
T cd05104         243 RNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMP-  321 (375)
T ss_pred             hhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCC-
Confidence            5899999999999999998865432211  112234557999999988888999999999999999997 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ......+.+........+...   ...+.+++..||+.||++|||+.++++.+..
T Consensus       322 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~cl~~dP~~RPs~~eil~~l~~  373 (375)
T cd05104         322 ------VDSKFYKMIKEGYRMLSPECA---PSEMYDIMKSCWDADPLKRPTFKQIVQLIEQ  373 (375)
T ss_pred             ------chHHHHHHHHhCccCCCCCCC---CHHHHHHHHHHccCChhHCcCHHHHHHHHHh
Confidence                  112222222222211111111   1235789999999999999999999988753

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.3e-21  Score=131.80  Aligned_cols=132  Identities=25%  Similarity=0.414  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+..+ .++.++|+||+|+++|++++|..||.......
T Consensus       130 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~  209 (277)
T cd06917         130 ANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDAFR  209 (277)
T ss_pred             HHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCChhh
Confidence            48999999999999999988765443333344678889999988654 35788999999999999999999986332211


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                              .........++......  ....+.+++.+||+.||++||++.+++.|+|+.+..
T Consensus       210 --------~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~~  262 (277)
T cd06917         210 --------AMMLIPKSKPPRLEDNG--YSKLLREFVAACLDEEPKERLSAEELLKSKWIKAHS  262 (277)
T ss_pred             --------hhhccccCCCCCCCccc--CCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhccc
Confidence                    11111111111111110  122357899999999999999999999999997644

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.85  E-value=2.7e-21  Score=130.92  Aligned_cols=133  Identities=24%  Similarity=0.316  Sum_probs=92.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC------CCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV------MTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~------~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.++|+|||.+.......  .....+++.|++||.+.+..      ++.++|+||+|+++|++++|..||..
T Consensus       132 ~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  209 (286)
T cd06622         132 TNVLVNGNGQVKLCDFGVSGNLVASL--AKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPP  209 (286)
T ss_pred             HHEEECCCCCEEEeecCCcccccCCc--cccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence            48999999999999999987553221  22234677899999886543      36789999999999999999999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      ...    ........... ...+...+..   ....+.+++.+||+.+|++||++++++.|+|+.....
T Consensus       210 ~~~----~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~~  270 (286)
T cd06622         210 ETY----ANIFAQLSAIV-DGDPPTLPSG---YSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYKN  270 (286)
T ss_pred             cch----hhHHHHHHHHh-hcCCCCCCcc---cCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhccC
Confidence            211    00111111111 2222222222   2233578999999999999999999999999987543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.85  E-value=2e-21  Score=131.33  Aligned_cols=132  Identities=26%  Similarity=0.364  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc----CCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT----MVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~----~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++....... .....++..|++||.+.+    ..++.++|+||+|+++|++++|..||....
T Consensus       133 ~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  211 (283)
T cd06617         133 SNVLINRNGQVKLCDFGISGYLVDSVA-KTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWK  211 (283)
T ss_pred             HHEEECCCCCEEEeecccccccccccc-cccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccc
Confidence            489999999999999999876543221 122346778999998764    335778999999999999999999985211


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ............ .....+...  ....+.+++.+||..+|++||++++++.|+|+....
T Consensus       212 ------~~~~~~~~~~~~-~~~~~~~~~--~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         212 ------TPFQQLKQVVEE-PSPQLPAEK--FSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             ------cCHHHHHHHHhc-CCCCCCccc--cCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhcc
Confidence                  111222222222 111111111  122357899999999999999999999999999865

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.85  E-value=4.9e-22  Score=134.30  Aligned_cols=138  Identities=18%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+. .++.++|+||+|+++|++++|.+||.......
T Consensus       128 ~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  207 (283)
T cd07835         128 QNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPLFPGDSEID  207 (283)
T ss_pred             HHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            48999999999999999987654332222233457789999988664 35778999999999999999999985322100


Q ss_pred             C-------CCCchhhHH-------H---hhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLI-------D---VLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+.....       .   ....................+.+++.+||+.||++|||+++++.|+|+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         208 QLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             HHHHHHHHhCCCChHHhhhhhhchhhhhhcccccccchhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            0       000000000       0   000000000000011112345789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.85  E-value=1.1e-21  Score=137.77  Aligned_cols=130  Identities=24%  Similarity=0.326  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCC-----------------------------------------------Ccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-----------------------------------------------SNRTLLA   33 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-----------------------------------------------~~~~~~~   33 (160)
                      +|||++.++.+||+|||+++......                                               .......
T Consensus       130 ~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (381)
T cd05626         130 DNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLV  209 (381)
T ss_pred             HHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccccccccccccchhhcccccccccccccccc
Confidence            48999999999999999875321000                                               0012346


Q ss_pred             ccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhh--cCCCCCCCHHHHHHHHHH
Q 040414           34 GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLD--QRLPPPVDQKVIQDILLA  111 (160)
Q Consensus        34 ~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  111 (160)
                      ||+.|+|||.+.+..++.++|+||+||++|+|++|.+||....       ..........  .....+....   ....+
T Consensus       210 gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~~~---~s~~~  279 (381)
T cd05626         210 GTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPT-------PTETQLKVINWENTLHIPPQVK---LSPEA  279 (381)
T ss_pred             CCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCC-------HHHHHHHHHccccccCCCCCCC---CCHHH
Confidence            8899999999988888899999999999999999999986221       1112222221  1111111101   11224


Q ss_pred             HHHHHh--hhccCCCCCCCHHHHHHHHhhhc
Q 040414          112 STISFA--CLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus       112 ~~l~~~--cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .+++.+  |+..++..|+++++++.|+|+..
T Consensus       280 ~dli~~ll~~~~~~~~R~~~~~~l~hp~f~~  310 (381)
T cd05626         280 VDLITKLCCSAEERLGRNGADDIKAHPFFSE  310 (381)
T ss_pred             HHHHHHHccCcccccCCCCHHHHhcCcccCC
Confidence            567765  55666777999999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.85  E-value=8.9e-22  Score=136.48  Aligned_cols=141  Identities=22%  Similarity=0.224  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||+++.....   .....++..|++||.+.+ ..++.++|+||+|++++++++|+.||.......
T Consensus       146 ~NIll~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~  222 (342)
T cd07879         146 GNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD  222 (342)
T ss_pred             HHEEECCCCCEEEeeCCCCcCCCCC---CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            4899999999999999998754321   122346778999999866 346788999999999999999999986322100


Q ss_pred             C-------CCCchhhHHHhhh-----------cCCC-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDPKIMLIDVLD-----------QRLP-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...+.........           ...+ .............+.+++.+||+.||++||++++++.|+|+..
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~  302 (342)
T cd07879         223 QLTQILKVTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDS  302 (342)
T ss_pred             HHHHHHHhcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhh
Confidence            0       0000000000000           0000 0000000111234578999999999999999999999999988


Q ss_pred             cCcc
Q 040414          141 KTPL  144 (160)
Q Consensus       141 ~~~~  144 (160)
                      ....
T Consensus       303 ~~~~  306 (342)
T cd07879         303 FRDA  306 (342)
T ss_pred             cccc
Confidence            5543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.85  E-value=9.9e-22  Score=133.17  Aligned_cols=137  Identities=23%  Similarity=0.266  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||++........  ....++..|++||.+.+..++.++|+||+|+++|++++|..||......  
T Consensus       134 ~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--  209 (287)
T cd06621         134 SNILLTRKGQVKLCDFGVSGELVNSLA--GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEP--  209 (287)
T ss_pred             HHEEEecCCeEEEeecccccccccccc--ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCC--
Confidence            489999999999999999875433221  1234677899999998888888999999999999999999998744221  


Q ss_pred             CCCchhhHHHhhhcCCCCCCC---HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVD---QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ...... ..............   .........+.+++.+||+.+|.+|||+.+++.|+|++...
T Consensus       210 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~~  273 (287)
T cd06621         210 PLGPIE-LLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQM  273 (287)
T ss_pred             CCChHH-HHHHHhcCCchhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCccccccc
Confidence            011111 11211111111100   00011123457899999999999999999999999996644

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.85  E-value=1.7e-21  Score=133.30  Aligned_cols=137  Identities=24%  Similarity=0.349  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+.......  .....++..|++||.+.+..++.++|+||+|++++++++|..||........
T Consensus       129 ~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~~~~~~~  206 (308)
T cd06615         129 SNILVNSRGEIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPPPDAKEL  206 (308)
T ss_pred             HHEEEecCCcEEEccCCCcccccccc--cccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCCcchhhH
Confidence            48999999999999999887543321  2234578889999998877788899999999999999999999752211000


Q ss_pred             ------CC--Cc--------------------hhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           81 ------SS--DP--------------------KIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        81 ------~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                            ..  ..                    ............++..+...  ....+.+++.+||..+|++|||++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~l~~~P~~Rpt~~~l  284 (308)
T cd06615         207 EAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSGA--FSDEFQDFVDKCLKKNPKERADLKEL  284 (308)
T ss_pred             HHhhcCccccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCcc--cCHHHHHHHHHHccCChhhCcCHHHH
Confidence                  00  00                    00000000001111111100  12235789999999999999999999


Q ss_pred             HHHHhhhcc
Q 040414          133 SQEFLITRK  141 (160)
Q Consensus       133 ~~~~~~~~~  141 (160)
                      +.|+|+.+.
T Consensus       285 l~~~~~~~~  293 (308)
T cd06615         285 TKHPFIKRA  293 (308)
T ss_pred             hcChhhhhc
Confidence            999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=2e-21  Score=125.19  Aligned_cols=144  Identities=18%  Similarity=0.173  Sum_probs=95.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|+||+.+|.+||.|||+++.+..+..    .....+-|.+|.+||.+.+. .+++..|+|..||++.+|+++.+.++..
T Consensus       153 aNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgn  232 (376)
T KOG0669|consen  153 ANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGN  232 (376)
T ss_pred             hhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCC
Confidence            599999999999999999976643221    22334568899999988765 4789999999999999999999987621


Q ss_pred             cc-------------cCCCCCch---hhHHHhhhcC-CCCCCCHHHHHHH------HHHHHHHHhhhccCCCCCCCHHHH
Q 040414           76 SS-------------LSSSSDPK---IMLIDVLDQR-LPPPVDQKVIQDI------LLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        76 ~~-------------~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                      ..             .....++.   .-+.+.+.-. .+...........      ....+|+.+++..||++|+++.++
T Consensus       233 teqqql~~Is~LcGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLle~ll~~DP~kR~~ad~a  312 (376)
T KOG0669|consen  233 TEQQQLHLISQLCGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLLEKLLKLDPTKRIDADQA  312 (376)
T ss_pred             hHHHHHHHHHHHhccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHHHHHhccCcccCcchHhh
Confidence            11             11111111   1111111111 1111101111111      146789999999999999999999


Q ss_pred             HHHHhhhccCcc
Q 040414          133 SQEFLITRKTPL  144 (160)
Q Consensus       133 ~~~~~~~~~~~~  144 (160)
                      +.|.||......
T Consensus       313 lnh~~F~kdp~p  324 (376)
T KOG0669|consen  313 LNHDFFWKDPMP  324 (376)
T ss_pred             hchhhhhcCCcc
Confidence            999999886544

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.85  E-value=3.7e-21  Score=129.83  Aligned_cols=125  Identities=22%  Similarity=0.285  Sum_probs=87.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.......  ......+++.|+|||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       151 ~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~-  229 (280)
T cd05049         151 RNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS-  229 (280)
T ss_pred             ceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC-
Confidence            589999999999999999875433221  1122334668999999988888999999999999999998 999975221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                            ....... +...........   ....+.+++.+||..||++||+++++++.+
T Consensus       230 ------~~~~~~~-~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~eil~~l  278 (280)
T cd05049         230 ------NEEVIEC-ITQGRLLQRPRT---CPSEVYDIMLGCWKRDPQQRINIKDIHERL  278 (280)
T ss_pred             ------HHHHHHH-HHcCCcCCCCCC---CCHHHHHHHHHHcCCCcccCCCHHHHHHHh
Confidence                  1111222 222211111111   122357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.85  E-value=1.2e-21  Score=135.42  Aligned_cols=143  Identities=22%  Similarity=0.253  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc----ccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~----~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||.++.........    ....++..|++||.+.. ..++.++|+||+|+++|++++|.+||...
T Consensus       136 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~  215 (334)
T cd07855         136 SNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGK  215 (334)
T ss_pred             HHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCC
Confidence            48999999999999999987654322111    22457778999998765 34678899999999999999999998633


Q ss_pred             cccCC-------CCCch---------hhHHHhh---hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           76 SSLSS-------SSDPK---------IMLIDVL---DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        76 ~~~~~-------~~~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .....       ...+.         .......   ......+...........+.+++.+||+.+|++|||+++++.|+
T Consensus       216 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~  295 (334)
T cd07855         216 NYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHP  295 (334)
T ss_pred             ChHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhCh
Confidence            21100       00000         0000000   01111110011111234568899999999999999999999999


Q ss_pred             hhhccCc
Q 040414          137 LITRKTP  143 (160)
Q Consensus       137 ~~~~~~~  143 (160)
                      |+.....
T Consensus       296 ~~~~~~~  302 (334)
T cd07855         296 FLAQYHD  302 (334)
T ss_pred             hhhhccC
Confidence            9987443

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.4e-21  Score=124.46  Aligned_cols=126  Identities=27%  Similarity=0.298  Sum_probs=98.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|+|++.++.+|++|||.+..-.  .....+.+||.-|.+||...+...+...|+|++|+++||++.|.+||.       
T Consensus       153 enlLlg~~~~lkiAdfGwsV~~p--~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFe-------  223 (281)
T KOG0580|consen  153 ENLLLGSAGELKIADFGWSVHAP--SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFE-------  223 (281)
T ss_pred             HHhccCCCCCeeccCCCceeecC--CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchh-------
Confidence            58999999999999999986532  233456889999999999999999999999999999999999999997       


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      +......+.+...-....|  ..   ....++++|.+|+..+|.+|.+..+++.|+|+..
T Consensus       224 s~~~~etYkrI~k~~~~~p--~~---is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  224 SQSHSETYKRIRKVDLKFP--ST---ISGGAADLISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             hhhhHHHHHHHHHccccCC--cc---cChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence            2223333433333322222  11   2223578999999999999999999999999875

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.85  E-value=8e-23  Score=132.24  Aligned_cols=133  Identities=23%  Similarity=0.287  Sum_probs=102.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      ||||++..|.+||||||.+..+.++-.. ..-.|...|+|||.+...  .+..++|+||+|++++|+.+|..|++...  
T Consensus       197 SNILldr~G~vKLCDFGIcGqLv~SiAk-T~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~--  273 (361)
T KOG1006|consen  197 SNILLDRHGDVKLCDFGICGQLVDSIAK-TVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWD--  273 (361)
T ss_pred             hheEEecCCCEeeecccchHhHHHHHHh-hhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHH--
Confidence            6999999999999999998776544322 224577789999988654  37789999999999999999999987333  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCC-CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPV-DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ....++.++..+.++.-. ...+......+..++..||.+|...||.-.+++.++|...
T Consensus       274 ----svfeql~~Vv~gdpp~l~~~~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~fyr~  332 (361)
T KOG1006|consen  274 ----SVFEQLCQVVIGDPPILLFDKECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKFPFYRM  332 (361)
T ss_pred             ----HHHHHHHHHHcCCCCeecCcccccccCHHHHHHHHHHhhcccccCcchhhhhcCchhhh
Confidence                244556666655554432 2333445556788999999999999999999999998875

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.85  E-value=1.5e-21  Score=138.05  Aligned_cols=133  Identities=22%  Similarity=0.324  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceecc--CCCCccccccccccccCCcccccC---CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~--~~~~~~~~~~~~~~~~~Pe~~~~~---~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      .||++.+++.|||+|||++..-.  ..........+...|+|||++..+   ++++++|+||||+|.|||++|..||.. 
T Consensus       517 nNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi-  595 (678)
T KOG0193|consen  517 NNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSI-  595 (678)
T ss_pred             cceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCC-
Confidence            48999999999999999975321  122222334577789999998643   578899999999999999999999861 


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ......+..+..+...+...........++++|+..||.+++++||.+.+|+..+...-
T Consensus       596 ------~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~~l~~l~  654 (678)
T KOG0193|consen  596 ------QNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLSKLEELL  654 (678)
T ss_pred             ------CChhheEEEecccccCccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHHHHHHhh
Confidence                  11122222232232222222222222335688999999999999999999999554443

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.85  E-value=1.8e-21  Score=129.75  Aligned_cols=124  Identities=27%  Similarity=0.402  Sum_probs=89.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+..............++..|++||.+.+...+.++|+||+|+++++|++|..||....    
T Consensus       129 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~----  204 (255)
T cd08219         129 KNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANS----  204 (255)
T ss_pred             ceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCC----
Confidence            5899999999999999998866543333334567888999999988878889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                         ............. .+.+...   ...+.+++.+||+.||++|||+++++..
T Consensus       205 ---~~~~~~~~~~~~~-~~~~~~~---~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         205 ---WKNLILKVCQGSY-KPLPSHY---SYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ---HHHHHHHHhcCCC-CCCCccc---CHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence               1222222222221 1121111   1235789999999999999999999764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.85  E-value=2.5e-21  Score=130.62  Aligned_cols=131  Identities=26%  Similarity=0.414  Sum_probs=94.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+..............++..|++||.+.+...+.++|+||+|++++++++|..||.....   
T Consensus       130 ~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~---  206 (277)
T cd06641         130 ANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP---  206 (277)
T ss_pred             HhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch---
Confidence            48999999999999999987654332222334567789999999877778889999999999999999999863211   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .. ....+.....+.....   ....+.+++.+||+.+|++||+++++++|+|+.+..
T Consensus       207 ----~~-~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~~~  260 (277)
T cd06641         207 ----MK-VLFLIPKNNPPTLEGN---YSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVRFA  260 (277)
T ss_pred             ----HH-HHHHHhcCCCCCCCcc---cCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhhhh
Confidence                11 1111211111111111   122347899999999999999999999999998854

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.85  E-value=1.1e-21  Score=133.45  Aligned_cols=132  Identities=23%  Similarity=0.320  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC----CCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV----MTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~----~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||.+..+...... ....++..|++||.+....    ++.++|+||+|+++|++++|..||....
T Consensus       144 ~nill~~~~~~kL~dfg~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  222 (296)
T cd06618         144 SNILLDASGNVKLCDFGISGRLVDSKAK-TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCK  222 (296)
T ss_pred             HHEEEcCCCCEEECccccchhccCCCcc-cCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcch
Confidence            4899999999999999998765432221 2234667899999987543    6778999999999999999999985211


Q ss_pred             ccCCCCCchhhHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .      ............. ..+...   .....+.+++.+||+.||++||+++++++|+|+....
T Consensus       223 ~------~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~~  280 (296)
T cd06618         223 T------EFEVLTKILQEEPPSLPPNE---GFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRRYE  280 (296)
T ss_pred             h------HHHHHHHHhcCCCCCCCCCC---CCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhccc
Confidence            0      1111222222211 111111   1122357899999999999999999999999988743

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.85  E-value=1.2e-21  Score=132.67  Aligned_cols=132  Identities=20%  Similarity=0.201  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+....... ......++..|++||.+.+..++.++|+||+|++++++++|..||......  
T Consensus       131 ~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~--  207 (285)
T cd05632         131 ENILLDDYGHIRISDLGLAVKIPEGE-SIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEK--  207 (285)
T ss_pred             HHEEECCCCCEEEecCCcceecCCCC-cccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHH--
Confidence            48999999999999999987543322 222345788999999998888888999999999999999999998622110  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~~  141 (160)
                       . ........... .........   ...+.+++..||+.||++||+     +++++.|+|+...
T Consensus       208 -~-~~~~~~~~~~~-~~~~~~~~~---~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05632         208 -V-KREEVDRRVLE-TEEVYSAKF---SEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNM  267 (285)
T ss_pred             -H-HHHHHHHhhhc-cccccCccC---CHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcC
Confidence             0 00111111111 011111111   123467999999999999999     8999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1.3e-21  Score=134.22  Aligned_cols=131  Identities=19%  Similarity=0.256  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----------------------------ccccccccccccCCcccccCCCCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----------------------------NRTLLAGTYGYIAPELAYTMVMTE   51 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----------------------------~~~~~~~~~~~~~Pe~~~~~~~~~   51 (160)
                      +||+++.++.++|+|||.+........                             ......|+..|++||.+.+..++.
T Consensus       132 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~  211 (316)
T cd05574         132 ENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGS  211 (316)
T ss_pred             HHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCc
Confidence            489999999999999998865432111                             011235677899999998887888


Q ss_pred             CcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC---
Q 040414           52 KCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT---  128 (160)
Q Consensus        52 ~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps---  128 (160)
                      ++|+||+|+++|++++|..||....       ...............+....   ....+.+++.+||+.||++|||   
T Consensus       212 ~~Di~slG~ll~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~R~s~~~  281 (316)
T cd05574         212 AVDWWTLGILLYEMLYGTTPFKGSN-------RDETFSNILKKEVTFPGSPP---VSSSARDLIRKLLVKDPSKRLGSKR  281 (316)
T ss_pred             hHHHHHHHHHHHHHhhCCCCCCCCc-------hHHHHHHHhcCCccCCCccc---cCHHHHHHHHHHccCCHhHCCCchh
Confidence            9999999999999999999986222       12222333322222221111   2234578999999999999999   


Q ss_pred             -HHHHHHHHhhhcc
Q 040414          129 -MQYVSQEFLITRK  141 (160)
Q Consensus       129 -~~~~~~~~~~~~~  141 (160)
                       +++++.|+|+...
T Consensus       282 ~~~~ll~~~~~~~~  295 (316)
T cd05574         282 GAAEIKQHPFFRGV  295 (316)
T ss_pred             hHHHHHcCchhhcC
Confidence             9999999999863

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.85  E-value=2.3e-21  Score=141.58  Aligned_cols=133  Identities=20%  Similarity=0.253  Sum_probs=95.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc---------cccccccccCCccc---ccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT---------LLAGTYGYIAPELA---YTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~---------~~~~~~~~~~Pe~~---~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      |||||+.+|..||||||.+...........         ...-|+.|.+||.+   .+..++.++|||++||++|.+...
T Consensus       175 ENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~  254 (738)
T KOG1989|consen  175 ENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYF  254 (738)
T ss_pred             hheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHh
Confidence            699999999999999999864322221110         12347789999975   566789999999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH  147 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~  147 (160)
                      ..||.....++           .+...+..|..   ......+.+||..||+.||++||++.+++...+.....+....
T Consensus       255 t~PFe~sg~la-----------Ilng~Y~~P~~---p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~~~~~~  319 (738)
T KOG1989|consen  255 TTPFEESGKLA-----------ILNGNYSFPPF---PNYSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANKPCPIP  319 (738)
T ss_pred             CCCcCcCccee-----------EEeccccCCCC---ccHHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcCCCCcc
Confidence            99997332211           12222222211   1223335789999999999999999999999998876655443

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2.5e-21  Score=135.61  Aligned_cols=130  Identities=18%  Similarity=0.279  Sum_probs=99.5

Q ss_pred             Cceee-cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIIL-NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill-~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||++ ..-|.|||.|||.+..+..+ ....+.+|+..|-|||++.+..| .++.||||+|||+|.+++|++||+...  
T Consensus       147 ENVVFFEKlGlVKLTDFGFSNkf~PG-~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeAN--  223 (864)
T KOG4717|consen  147 ENVVFFEKLGLVKLTDFGFSNKFQPG-KKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEAN--  223 (864)
T ss_pred             ceeEEeeecCceEeeeccccccCCCc-chhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCcccccc--
Confidence            46655 45689999999998755433 33456789999999999998877 567999999999999999999998333  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                           ....+-..++..+..|  ..   ....+++||..||..||.+|.+.++|..+.|++....
T Consensus       224 -----DSETLTmImDCKYtvP--sh---vS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~  278 (864)
T KOG4717|consen  224 -----DSETLTMIMDCKYTVP--SH---VSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDR  278 (864)
T ss_pred             -----chhhhhhhhcccccCc--hh---hhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCC
Confidence                 2334444455555433  12   2334588999999999999999999999999997553

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.85  E-value=2.3e-21  Score=129.69  Aligned_cols=130  Identities=31%  Similarity=0.422  Sum_probs=89.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc----ccccccccccCCcccccCC---CCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMV---MTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~----~~~~~~~~~~~Pe~~~~~~---~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+++.++.+||+|||.+..........    ....++..|++||.+....   .+.++|+||+|++++++++|..||.
T Consensus       128 ~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~  207 (264)
T cd06626         128 ANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWS  207 (264)
T ss_pred             HHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCcc
Confidence            48999999999999999987654332211    1244677899999987765   6788999999999999999999986


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ....      ......... ....+..+. .......+.+++.+||+.+|++|||+++++.|+|+
T Consensus       208 ~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         208 ELDN------EFQIMFHVG-AGHKPPIPD-SLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             CCcc------hHHHHHHHh-cCCCCCCCc-ccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            3221      111111111 111111111 11112234689999999999999999999999885

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.85  E-value=1.7e-21  Score=131.83  Aligned_cols=138  Identities=22%  Similarity=0.244  Sum_probs=89.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||++..............++..|++||.+.+. .++.++|+||+|++++++++|.++|.......
T Consensus       129 ~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~~~~~~  208 (286)
T cd07846         129 ENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDID  208 (286)
T ss_pred             HHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCCCchHH
Confidence            48999999999999999988654443333345577889999988653 35678999999999999999998885322100


Q ss_pred             CC-------CCchhhHHHh------hhcCCCCCCC--H----HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SS-------SDPKIMLIDV------LDQRLPPPVD--Q----KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~-------~~~~~~~~~~------~~~~~~~~~~--~----~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..       ..........      ......+...  .    ........+.+++.+||+.+|++||++.++++|+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         209 QLYHIIKCLGNLIPRHQEIFQKNPLFAGMRLPEVKEIEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             HHHHHHHHhCCCchhhHHHhccchHhhccccccccCcchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            00       0000000000      0000000000  0    000112346789999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.85  E-value=5.5e-21  Score=129.10  Aligned_cols=131  Identities=25%  Similarity=0.336  Sum_probs=91.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.......  ......++..|++||.+.++.++.++|+||+|+++|++++ |..||.... 
T Consensus       138 ~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~-  216 (279)
T cd05111         138 RNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMR-  216 (279)
T ss_pred             ceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCC-
Confidence            599999999999999999986543221  1122345668999999988888899999999999999998 998885221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            . ......+......+.+..+.   ..+.+++.+||..||+.|||+++++..+......
T Consensus       217 ------~-~~~~~~~~~~~~~~~~~~~~---~~~~~li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         217 ------P-HEVPDLLEKGERLAQPQICT---IDVYMVMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             ------H-HHHHHHHHCCCcCCCCCCCC---HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence                  1 11222222222212111111   1246788899999999999999999877665443

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.85  E-value=1.6e-21  Score=130.65  Aligned_cols=128  Identities=23%  Similarity=0.297  Sum_probs=89.8

Q ss_pred             CceeecCCCceEEcccccceeccCCC------CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS------SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~------~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.++|+|||.+.......      .......++..|++||.+.+..++.++|+||+|++++++++|..||..
T Consensus       131 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~  210 (265)
T cd06631         131 NNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLAS  210 (265)
T ss_pred             HhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCcccc
Confidence            48999999999999999887543211      111223467789999999888788899999999999999999999863


Q ss_pred             ccccCCCCCchhhHHHhhhc-CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQ-RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...       .......... ...+..+..   ....+.+++.+||+.+|++||++++++.|+|+
T Consensus       211 ~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         211 MDR-------LAAMFYIGAHRGLMPRLPDS---FSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             CCh-------HHHHHHhhhccCCCCCCCCC---CCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            221       1111111111 111111111   12234789999999999999999999999985

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=3.2e-21  Score=131.94  Aligned_cols=128  Identities=25%  Similarity=0.380  Sum_probs=97.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||++|++|++||.|||+++.-.-....+.+.+|||-|+|||++.+++|+.++|.||+|+++|||+.|++||+..     
T Consensus       479 DNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe-----  553 (683)
T KOG0696|consen  479 DNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE-----  553 (683)
T ss_pred             cceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC-----
Confidence            599999999999999999986444455667789999999999999999999999999999999999999999833     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                        ...............-|  .....   ...+++...|.+.|.+|.-     -++|-.|+||.+
T Consensus       554 --DE~elF~aI~ehnvsyP--KslSk---EAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~  611 (683)
T KOG0696|consen  554 --DEDELFQAIMEHNVSYP--KSLSK---EAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRR  611 (683)
T ss_pred             --CHHHHHHHHHHccCcCc--ccccH---HHHHHHHHHhhcCCccccCCCCccccchhhCcchhh
Confidence              23334444433332221  11222   2356777889999999943     467888888875

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.85  E-value=2.8e-21  Score=131.28  Aligned_cols=138  Identities=20%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............+++.|++||.+.+.. .+.++|+||+|++++++++|.+||.......
T Consensus       135 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~f~~~~~~~  214 (293)
T cd07843         135 SNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKPLFPGKSEID  214 (293)
T ss_pred             HHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            489999999999999999887654433333345677899999887654 5788999999999999999999986322110


Q ss_pred             CC-------CCchhhHHHhh------h-cCC----CCCCCHHHHH--HHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SS-------SDPKIMLIDVL------D-QRL----PPPVDQKVIQ--DILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~-------~~~~~~~~~~~------~-~~~----~~~~~~~~~~--~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..       ..+....+...      . ...    ..........  ....+.+++.+||+.+|++|||+++++.|+|+
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         215 QLNKIFKLLGTPTEKIWPGFSELPGAKKKTFTKYPYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             HHHHHHHHhCCCchHHHHHhhccchhcccccccccchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            00       00000000000      0 000    0000000000  12335789999999999999999999999986

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.85  E-value=4.1e-21  Score=131.65  Aligned_cols=135  Identities=16%  Similarity=0.222  Sum_probs=90.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-------ccccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +||+++.++.++++|||.+........       ......++..|++||.+...  .++.++|+||+|++++++++|..|
T Consensus       130 ~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~p  209 (314)
T cd08216         130 SHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVP  209 (314)
T ss_pred             ceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCC
Confidence            589999999999999998875532211       11223456689999998653  467889999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCC----------------------------CCC-CCHHHHHHHHHHHHHHHhhhccC
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRL----------------------------PPP-VDQKVIQDILLASTISFACLQSN  122 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~-~~~~~~~~~~~~~~l~~~cl~~d  122 (160)
                      |......       ...........                            ... ...........+.+++.+||+.|
T Consensus       210 f~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~  282 (314)
T cd08216         210 FKDMPAT-------QMLLEKVRGTVPCLLDKSTYPLYEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRD  282 (314)
T ss_pred             CCCCCHH-------HHHHHHHhccCccccccCchhhhcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcC
Confidence            8632210       00000000000                            000 00011112234678999999999


Q ss_pred             CCCCCCHHHHHHHHhhhccC
Q 040414          123 PKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       123 p~~Rps~~~~~~~~~~~~~~  142 (160)
                      |++|||++++++|+|+....
T Consensus       283 P~~Rpt~~~ll~~p~~~~~~  302 (314)
T cd08216         283 PESRPSASQLLNHSFFKQCK  302 (314)
T ss_pred             CCcCcCHHHHhcCchHhhhc
Confidence            99999999999999998643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.85  E-value=1e-21  Score=133.46  Aligned_cols=132  Identities=17%  Similarity=0.154  Sum_probs=88.6

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++. ++.+||+|||.++.............+++.|+|||.+.+. .++.++|+||+|+++|+|++|.+||......
T Consensus       139 ~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~  218 (295)
T cd07837         139 QNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSEL  218 (295)
T ss_pred             HHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHH
Confidence            5899998 8899999999987654332222233457789999988653 4678899999999999999999998632211


Q ss_pred             CCCCCchhhHHHhhh----------------------cC-CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLD----------------------QR-LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                             ........                      .. .+.............+.+++.+||+.||++||++++++.|
T Consensus       219 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~  291 (295)
T cd07837         219 -------QQLLHIFKLLGTPTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTH  291 (295)
T ss_pred             -------HHHHHHHHHhCCCChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhcC
Confidence                   00000000                      00 0000000001123346789999999999999999999999


Q ss_pred             Hhhh
Q 040414          136 FLIT  139 (160)
Q Consensus       136 ~~~~  139 (160)
                      +|+.
T Consensus       292 ~~~~  295 (295)
T cd07837         292 PYFD  295 (295)
T ss_pred             CCcC
Confidence            9973

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.85  E-value=4.3e-21  Score=129.90  Aligned_cols=138  Identities=25%  Similarity=0.253  Sum_probs=90.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+........ ......++..|++||.+... .++.++|+||+|++++++++|.+||......
T Consensus       129 ~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~  208 (288)
T cd07833         129 ENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPGDSDI  208 (288)
T ss_pred             HHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            489999999999999999876554332 22335567889999998877 6788999999999999999999988632110


Q ss_pred             CC--------CCCchhhHHHh-----hhc-CCCCCCCHHHH------HHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           79 SS--------SSDPKIMLIDV-----LDQ-RLPPPVDQKVI------QDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        79 ~~--------~~~~~~~~~~~-----~~~-~~~~~~~~~~~------~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..        ...........     ... ..+........      .....+.+++.+||..+|++|||+++++.|+|+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         209 DQLYLIQKCLGPLPPSHQELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             HHHHHHHHHhCCCCHHHhhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            00        00000000000     000 00000000000      012346889999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1.7e-21  Score=134.54  Aligned_cols=133  Identities=23%  Similarity=0.271  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.++.+||+|||++.......... ....|++.|+|||++..     ..++.++|+||+||++|+|++|..||..
T Consensus       131 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~  210 (331)
T cd05597         131 DNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             HHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCC
Confidence            48999999999999999987654332221 22458899999999863     3457789999999999999999999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhcc--CCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS--NPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~--dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..       .................+.........+.+++.+|+..  ++..|+++++++.|+|+..
T Consensus       211 ~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~  271 (331)
T cd05597         211 ES-------LVETYGKIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEG  271 (331)
T ss_pred             CC-------HHHHHHHHHcCCCcccCCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCC
Confidence            21       11111222111111111111111222346777776654  3444889999999999975

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.85  E-value=3.7e-21  Score=130.08  Aligned_cols=125  Identities=20%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||.+.++.++.++|+||+|++++++++ |..||...  
T Consensus       153 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~--  230 (283)
T cd05091         153 RNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY--  230 (283)
T ss_pred             hheEecCCCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC--
Confidence            589999999999999999876533221  1122335668999999988888889999999999999997 77787521  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ... .....+......+.+..+..   .+.+++..||+.+|++||++.+++..+
T Consensus       231 -----~~~-~~~~~i~~~~~~~~~~~~~~---~~~~li~~cl~~~p~~RP~~~~i~~~l  280 (283)
T cd05091         231 -----SNQ-DVIEMIRNRQVLPCPDDCPA---WVYTLMLECWNEFPSRRPRFKDIHSRL  280 (283)
T ss_pred             -----CHH-HHHHHHHcCCcCCCCCCCCH---HHHHHHHHHhCCCcccCCCHHHHHHHh
Confidence                 112 22222222222222222222   246799999999999999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.85  E-value=2e-21  Score=129.52  Aligned_cols=127  Identities=23%  Similarity=0.341  Sum_probs=90.5

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++ .++|+|||.+..............+++.|++||.+....++.++|+||+|++++++++|..||...    
T Consensus       130 ~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~----  205 (257)
T cd08225         130 QNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGN----  205 (257)
T ss_pred             HHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCc----
Confidence            489998775 469999998876554333333345788899999988777888999999999999999999998521    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         ............... +....   ....+.+++.+||..+|++|||+++++.|+|+
T Consensus       206 ---~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         206 ---NLHQLVLKICQGYFA-PISPN---FSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             ---cHHHHHHHHhcccCC-CCCCC---CCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence               122222222222221 11111   11235789999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.85  E-value=2.4e-21  Score=130.24  Aligned_cols=131  Identities=23%  Similarity=0.400  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.++++|||.++.......  ......++..|++||.+....  ++.++|+||+|++++++++|..||....
T Consensus       137 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~  216 (272)
T cd06629         137 DNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE  216 (272)
T ss_pred             hhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc
Confidence            589999999999999999875432211  112234677899999887654  6788999999999999999999985221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCH-HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQ-KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       .................. ........+.+++.+||+.+|+.|||++++++|+|+
T Consensus       217 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         217 A-------IAAMFKLGNKRSAPPIPPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             h-------HHHHHHhhccccCCcCCccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence            1       111111111111111111 111122346789999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.85  E-value=4.4e-22  Score=138.86  Aligned_cols=132  Identities=20%  Similarity=0.265  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----------------------------------ccccccccccccCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----------------------------------NRTLLAGTYGYIAPELAY   45 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~Pe~~~   45 (160)
                      +||+++.++.++|+|||+++.......                                   ......||+.|+|||++.
T Consensus       130 ~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~  209 (360)
T cd05627         130 DNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFM  209 (360)
T ss_pred             HHEEECCCCCEEEeeccCCcccccccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHc
Confidence            489999999999999999864421100                                   011346889999999998


Q ss_pred             cCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 040414           46 TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKS  125 (160)
Q Consensus        46 ~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~  125 (160)
                      +..++.++|+||+||++|+|++|.+||....       .................+... .....+.+++.+++. ||.+
T Consensus       210 ~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~~-~~s~~~~~li~~l~~-~p~~  280 (360)
T cd05627         210 QTGYNKLCDWWSLGVIMYEMLIGYPPFCSET-------PQETYRKVMNWKETLVFPPEV-PISEKAKDLILRFCT-DSEN  280 (360)
T ss_pred             CCCCCCcceeccccceeeecccCCCCCCCCC-------HHHHHHHHHcCCCceecCCCC-CCCHHHHHHHHHhcc-Chhh
Confidence            8888999999999999999999999986222       222222222211111111000 011234667777664 9999


Q ss_pred             CC---CHHHHHHHHhhhcc
Q 040414          126 RP---TMQYVSQEFLITRK  141 (160)
Q Consensus       126 Rp---s~~~~~~~~~~~~~  141 (160)
                      |+   ++++++.|+|+...
T Consensus       281 R~~~~~~~ei~~hp~f~~~  299 (360)
T cd05627         281 RIGSNGVEEIKSHPFFEGV  299 (360)
T ss_pred             cCCCCCHHHHhcCCCCCCC
Confidence            98   58999999999863

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.85  E-value=6e-21  Score=127.44  Aligned_cols=126  Identities=22%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++.+.......   ....++..|++||.+....++.++|+||+|+++|++++ |.+||....
T Consensus       124 ~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  203 (257)
T cd05116         124 RNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMK  203 (257)
T ss_pred             hhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            48999999999999999988664432211   11223467999999887778889999999999999997 999986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             .. .....+......+.+....   ..+.+++.+||+.||++||++.+|...+.
T Consensus       204 -------~~-~~~~~i~~~~~~~~~~~~~---~~l~~li~~~~~~~p~~Rp~~~~i~~~l~  253 (257)
T cd05116         204 -------GN-EVTQMIESGERMECPQRCP---PEMYDLMKLCWTYGVDERPGFAVVELRLR  253 (257)
T ss_pred             -------HH-HHHHHHHCCCCCCCCCCCC---HHHHHHHHHHhccCchhCcCHHHHHHHHh
Confidence                   11 1222222222222222222   23578999999999999999999987664

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.85  E-value=1.9e-21  Score=129.02  Aligned_cols=127  Identities=28%  Similarity=0.407  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+........ .....++..|++||.+.+...+.++|+||+|++++++++|..||....    
T Consensus       127 ~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----  201 (253)
T cd05122         127 ANILLTSDGEVKLIDFGLSAQLSDTKA-RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELP----  201 (253)
T ss_pred             HHEEEccCCeEEEeecccccccccccc-ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCc----
Confidence            489999999999999999876544321 233457778999999987778889999999999999999999986322    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                         .......... ......... ......+.+++.+||+.||++|||+++++.|+|
T Consensus       202 ---~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         202 ---PMKALFKIAT-NGPPGLRNP-EKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             ---hHHHHHHHHh-cCCCCcCcc-cccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence               1111111111 111111111 101223578999999999999999999999986

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.85  E-value=2.7e-21  Score=130.55  Aligned_cols=138  Identities=20%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+..............++..|.+||.+.+. ..+.++|+||+|++++++++|+.+|.......
T Consensus       127 ~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~  206 (283)
T cd05118         127 ENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEID  206 (283)
T ss_pred             HHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            48999999999999999988665443222234567789999998766 56788999999999999999999885322100


Q ss_pred             C-------CCCchhhHHHh-----------hhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLIDV-----------LDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+.......           ...................+.+++.+||+.||.+||++++++.|+|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         207 QLFKIFRTLGTPDPEVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             HHHHHHHHcCCCchHhcccchhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence            0       00000000000           00000000011111223456889999999999999999999999985

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.85  E-value=1.6e-21  Score=134.64  Aligned_cols=133  Identities=20%  Similarity=0.271  Sum_probs=89.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||+++......... ....|++.|+|||++.+     +.++.++|+||+|+++|+|++|..||..
T Consensus       131 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~  210 (331)
T cd05624         131 DNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYA  210 (331)
T ss_pred             HHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccC
Confidence            48999999999999999987654432221 23458899999998865     4467789999999999999999999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~  140 (160)
                      ..       ...............+.+.........+.+++.+|+..++++  |+++++++.|+|+..
T Consensus       211 ~~-------~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~  271 (331)
T cd05624         211 ES-------LVETYGKIMNHEERFQFPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEG  271 (331)
T ss_pred             CC-------HHHHHHHHHcCCCcccCCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCC
Confidence            22       112222222211111111111112234577888888765544  579999999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.85  E-value=6.7e-21  Score=130.77  Aligned_cols=130  Identities=23%  Similarity=0.345  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.+.......  .....+..|++||.+....++.++|+||+|+++|++++ |..||.... 
T Consensus       138 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~-  216 (316)
T cd05108         138 RNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-  216 (316)
T ss_pred             hheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-
Confidence            59999999999999999998765332211  11223557999999988888899999999999999997 888885221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                             .......+......+.+..+.   ..+.+++.+||..+|++||++.+++.++.....
T Consensus       217 -------~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rps~~~l~~~l~~~~~  270 (316)
T cd05108         217 -------ASEISSILEKGERLPQPPICT---IDVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  270 (316)
T ss_pred             -------HHHHHHHHhCCCCCCCCCCCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHc
Confidence                   112222222222222221111   124678999999999999999999998765543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.84  E-value=7.9e-21  Score=127.40  Aligned_cols=129  Identities=20%  Similarity=0.267  Sum_probs=89.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.+.+...+.++|+||+|++++++++|..||.....   
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---  211 (267)
T cd08229         135 ANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---  211 (267)
T ss_pred             HHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccc---
Confidence            48999999999999999987654433333334577889999999887788899999999999999999999852211   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                         ......+.+.....++.....  ....+.+++.+||+.||++|||+.+|++.+.
T Consensus       212 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~  263 (267)
T cd08229         212 ---NLYSLCKKIEQCDYPPLPSDH--YSEELRQLVNMCINPDPEKRPDITYVYDVAK  263 (267)
T ss_pred             ---hHHHHhhhhhcCCCCCCCccc--ccHHHHHHHHHhcCCCcccCCCHHHHHHHHh
Confidence               011111111111112111111  1223578999999999999999998877653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.84  E-value=3.4e-21  Score=132.84  Aligned_cols=142  Identities=15%  Similarity=0.228  Sum_probs=87.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-------ccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +||+++.++.++++||+..........       ......++..|++||++.+  ..++.++|+||+|++++++++|..|
T Consensus       130 ~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p  209 (327)
T cd08227         130 SHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP  209 (327)
T ss_pred             hhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCC
Confidence            599999999999999976543221111       0111235667999999875  3477899999999999999999999


Q ss_pred             cccccccCC------CCCc-----hhhHHHhhh-------------------cCCC----CCCCHHHHHHHHHHHHHHHh
Q 040414           72 RDLLSSLSS------SSDP-----KIMLIDVLD-------------------QRLP----PPVDQKVIQDILLASTISFA  117 (160)
Q Consensus        72 ~~~~~~~~~------~~~~-----~~~~~~~~~-------------------~~~~----~~~~~~~~~~~~~~~~l~~~  117 (160)
                      |........      ...+     .........                   ...+    .............+.+|+.+
T Consensus       210 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  289 (327)
T cd08227         210 FKDMPATQMLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQ  289 (327)
T ss_pred             CCCcchhHHHHHHhcCCccccccccchhhhhcccCCcccCCcCCCCcccccCCcCccccCCcccccccccCHHHHHHHHH
Confidence            863221000      0000     000000000                   0000    00000001112346789999


Q ss_pred             hhccCCCCCCCHHHHHHHHhhhccC
Q 040414          118 CLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       118 cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ||+.||++|||++++++|+|+....
T Consensus       290 ~l~~dP~~Rpt~~ell~~p~f~~~~  314 (327)
T cd08227         290 CLQRNPDARPSASTLLNHSFFKQIK  314 (327)
T ss_pred             HHhhCchhcCCHHHHhcChhhhhcc
Confidence            9999999999999999999998644

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.84  E-value=9.9e-21  Score=128.57  Aligned_cols=127  Identities=25%  Similarity=0.347  Sum_probs=88.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.+.......  ....++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       161 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-  239 (293)
T cd05053         161 RNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-  239 (293)
T ss_pred             eeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC-
Confidence            58999999999999999988654332111  11223557999999888888899999999999999997 888875211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             .......+......+.+...   ...+.+++.+||..||++|||++++++++..
T Consensus       240 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~eil~~l~~  290 (293)
T cd05053         240 -------VEELFKLLKEGYRMEKPQNC---TQELYHLMRDCWHEVPSQRPTFKQLVEDLDR  290 (293)
T ss_pred             -------HHHHHHHHHcCCcCCCCCCC---CHHHHHHHHHHcccCcccCcCHHHHHHHHHH
Confidence                   11122222222222222111   2235789999999999999999999998653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.84  E-value=3e-21  Score=130.42  Aligned_cols=131  Identities=19%  Similarity=0.237  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||++.......  .....++..|++||.+.. ..++.++|+||+|++++++++|..||.....  
T Consensus       126 ~Nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~--  201 (279)
T cd05633         126 ANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--  201 (279)
T ss_pred             HHEEECCCCCEEEccCCcceeccccC--ccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCC--
Confidence            48999999999999999987543322  122457889999998864 4467889999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~~  142 (160)
                        . ........ ........+....   ..+.+++.+||..||++|+     |++++++|+|+.+..
T Consensus       202 --~-~~~~~~~~-~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~~  262 (279)
T cd05633         202 --K-DKHEIDRM-TLTVNVELPDSFS---PELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGID  262 (279)
T ss_pred             --c-CHHHHHHH-hhcCCcCCccccC---HHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCCC
Confidence              0 01111111 1111222221111   2347889999999999999     699999999998844

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.84  E-value=6.8e-21  Score=130.34  Aligned_cols=129  Identities=24%  Similarity=0.351  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+......    ....++..|++||.+.   ....+.++|+||+|++++++++|..||.... 
T Consensus       144 ~nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~-  218 (308)
T cd06634         144 GNILLSEPGLVKLGDFGSASIMAPA----NXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-  218 (308)
T ss_pred             HhEEECCCCcEEECCcccceeecCc----ccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCcccc-
Confidence            4899999999999999988754332    2245677899999874   3446778999999999999999999975321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                            .............+......   ....+.+++.+||..+|++||++++++.|+|+.....
T Consensus       219 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~~~  275 (308)
T cd06634         219 ------AMSALYHIAQNESPALQSGH---WSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  275 (308)
T ss_pred             ------HHHHHHHHhhcCCCCcCccc---ccHHHHHHHHHHhhCCcccCCCHHHHhhCccccccCC
Confidence                  11111222222221111111   1223578999999999999999999999999988543

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.84  E-value=1.3e-21  Score=138.72  Aligned_cols=131  Identities=23%  Similarity=0.344  Sum_probs=102.7

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++++ |.|||+|+|+|..+..+.  ..+.+|||.|||||.+. ..|...+||||||+.++||+|+..||..     
T Consensus       174 DNIFinG~~G~VKIGDLGLAtl~r~s~--aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsE-----  245 (632)
T KOG0584|consen  174 DNIFVNGNLGEVKIGDLGLATLLRKSH--AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSE-----  245 (632)
T ss_pred             ceEEEcCCcCceeecchhHHHHhhccc--cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhh-----
Confidence            59999876 899999999998765432  23368999999999987 5688899999999999999999999873     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                       +..++..+.++..+..|..+..   .....+++||.+||.. ...|+|+.++|.|+||......
T Consensus       246 -C~n~AQIYKKV~SGiKP~sl~k---V~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d~g~  305 (632)
T KOG0584|consen  246 -CTNPAQIYKKVTSGIKPAALSK---VKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDEDGGI  305 (632)
T ss_pred             -hCCHHHHHHHHHcCCCHHHhhc---cCCHHHHHHHHHHhcC-chhccCHHHHhhChhhcccccc
Confidence             3345556666666655443221   1133468999999999 9999999999999999987543

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.84  E-value=1.6e-21  Score=133.33  Aligned_cols=134  Identities=20%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-----------cccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-----------RTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-----------~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||+++.++.++|+|||+++........           .....+++.|++||.+.+. .++.++|+||+|++++++++|
T Consensus       144 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g  223 (311)
T cd07866         144 ANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTR  223 (311)
T ss_pred             HHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhC
Confidence            4899999999999999998755432111           1123456789999987654 467889999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhh----------------------hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVL----------------------DQRLPPPVDQKVIQDILLASTISFACLQSNPKSR  126 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  126 (160)
                      .+||........    ........                      ....+.............+.+++.+||+.||++|
T Consensus       224 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R  299 (311)
T cd07866         224 RPILQGKSDIDQ----LHLIFKLCGTPTEETWPGWRSLPGCEGVHSFTNYPRTLEERFGKLGPEGLDLLSKLLSLDPYKR  299 (311)
T ss_pred             CCCCCCCCHHHH----HHHHHHHhCCCChhhchhhhhcccccccccCCCCCccHHHHcccCChhHHHHHHHHcccCcccC
Confidence            999863221100    00000000                      0000000000001112346789999999999999


Q ss_pred             CCHHHHHHHHhh
Q 040414          127 PTMQYVSQEFLI  138 (160)
Q Consensus       127 ps~~~~~~~~~~  138 (160)
                      ||+.+++.|+||
T Consensus       300 ~t~~ell~~~~f  311 (311)
T cd07866         300 LTASDALEHPYF  311 (311)
T ss_pred             cCHHHHhcCCCC
Confidence            999999999986

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.84  E-value=3.1e-21  Score=128.59  Aligned_cols=127  Identities=25%  Similarity=0.351  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.+....... ......++..|++||.+.... ++.++|+||+|++++++++|..||....   
T Consensus       131 ~ni~~~~~~~~kl~d~~~~~~~~~~~-~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~---  206 (258)
T cd06632         131 ANILVDTNGVVKLADFGMAKQVVEFS-FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLE---  206 (258)
T ss_pred             HHEEECCCCCEEEccCccceeccccc-cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCc---
Confidence            48999999999999999987654332 223345778899999887665 7788999999999999999999986322   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          .................+..   ....+.+++.+||+.+|++||++++++.|+|+
T Consensus       207 ----~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         207 ----GVAAVFKIGRSKELPPIPDH---LSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             ----HHHHHHHHHhcccCCCcCCC---cCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence                11112221111111111111   12234789999999999999999999999874

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=9.1e-22  Score=148.80  Aligned_cols=132  Identities=25%  Similarity=0.307  Sum_probs=97.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCC---CCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMV---MTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~---~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+|+.+|.+|++|||.+..+.++..    ......||+.|||||++.+..   ...++||||+|||+.||++|+.||.
T Consensus      1363 aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~ 1442 (1509)
T KOG4645|consen 1363 ANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWA 1442 (1509)
T ss_pred             cceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchh
Confidence            599999999999999999987765431    123578999999999987653   4568999999999999999999986


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..+..      .....++.-+.. +..+..   ......+|+..||..||+.|-++.|+++|-|-+...
T Consensus      1443 ~~dne------~aIMy~V~~gh~-Pq~P~~---ls~~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~ 1501 (1509)
T KOG4645|consen 1443 ELDNE------WAIMYHVAAGHK-PQIPER---LSSEGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCT 1501 (1509)
T ss_pred             hccch------hHHHhHHhccCC-CCCchh---hhHhHHHHHHHHHhcCchhhhHHHHHHHhhcccccc
Confidence            43321      111222222211 222222   444568999999999999999999999998877643

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.84  E-value=1.9e-21  Score=130.59  Aligned_cols=127  Identities=21%  Similarity=0.291  Sum_probs=90.6

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++ .++|+|||.++......    ...++..|+|||++.+..++.++|+||+|++++++++|..||...... 
T Consensus       138 ~nil~~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~-  212 (267)
T PHA03390        138 ENVLYDRAKDRIYLCDYGLCKIIGTPS----CYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDE-  212 (267)
T ss_pred             HHEEEeCCCCeEEEecCccceecCCCc----cCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcc-
Confidence            489999888 99999999987654322    234678899999998888888999999999999999999998622110 


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-HHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-MQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-~~~~~~~~~~~  139 (160)
                        ...............  +...   .....+.+++.+||+.+|.+|++ ++++++|+|+.
T Consensus       213 --~~~~~~~~~~~~~~~--~~~~---~~~~~~~~li~~~l~~~p~~R~~~~~~~l~h~~~~  266 (267)
T PHA03390        213 --ELDLESLLKRQQKKL--PFIK---NVSKNANDFVQSMLKYNINYRLTNYNEIIKHPFLK  266 (267)
T ss_pred             --hhhHHHHHHhhcccC--Cccc---ccCHHHHHHHHHHhccChhhCCchHHHHhcCCccc
Confidence              000111111111111  1111   22334578999999999999996 69999999986

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.84  E-value=2.9e-21  Score=130.33  Aligned_cols=138  Identities=21%  Similarity=0.184  Sum_probs=89.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++..............+..|++||.+... .++.++|+||+|++++++++|.+||.......
T Consensus       127 ~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~  206 (282)
T cd07829         127 QNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLFPGDSEID  206 (282)
T ss_pred             heEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCCCCccHHH
Confidence            58999999999999999987654433222333456679999988766 67888999999999999999999885322100


Q ss_pred             C-------CCCchhhHHHhh------hcCCC----CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLIDVL------DQRLP----PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+....+...      ....+    .............+.+++.+||..||++||++++++.|+|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         207 QLFKIFQILGTPTEESWPGVTKLPDYKPTFPKFPPKDLEKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             HHHHHHHHhCCCcHHHHHhhcccccccccccccCccchHHhcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            0       000000000000      00000    00000011112346889999999999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.84  E-value=2.2e-21  Score=134.23  Aligned_cols=142  Identities=21%  Similarity=0.209  Sum_probs=91.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||++.........   .....++..|+|||.+.+ ..++.++|+||+|+++++|++|.+||....
T Consensus       135 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~  214 (336)
T cd07849         135 SNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKD  214 (336)
T ss_pred             HHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            4899999999999999998765432211   122456788999998754 346788999999999999999999985321


Q ss_pred             ccCC--------CCCchhhHHH--------hhh---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSS--------SSDPKIMLID--------VLD---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~--------~~~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ....        ..........        ...   .....+...........+.+++.+||+.||++|||+.+++.|+|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~  294 (336)
T cd07849         215 YLHQLNLILGVLGTPSQEDLNCIISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPY  294 (336)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence            1000        0000000000        000   00000000001112234678999999999999999999999999


Q ss_pred             hhccC
Q 040414          138 ITRKT  142 (160)
Q Consensus       138 ~~~~~  142 (160)
                      +....
T Consensus       295 ~~~~~  299 (336)
T cd07849         295 LEQYH  299 (336)
T ss_pred             ccccC
Confidence            98643

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.84  E-value=1.2e-20  Score=129.54  Aligned_cols=131  Identities=24%  Similarity=0.361  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+......    ....+++.|++||.+.   .+.++.++|+||+|++++++++|..||...  
T Consensus       154 ~Nil~~~~~~~kl~dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~--  227 (317)
T cd06635         154 GNILLTEPGQVKLADFGSASIASPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM--  227 (317)
T ss_pred             ccEEECCCCCEEEecCCCccccCCc----ccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCc--
Confidence            5899999999999999987653321    2245777899999874   345678899999999999999999997522  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                           ..............+.......   ...+.+++.+||+.+|.+||++.++++|+|+.......
T Consensus       228 -----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~  287 (317)
T cd06635         228 -----NAMSALYHIAQNESPTLQSNEW---SDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPET  287 (317)
T ss_pred             -----cHHHHHHHHHhccCCCCCCccc---cHHHHHHHHHHccCCcccCcCHHHHHhChhhhccCccc
Confidence                 1112222222222221111111   12357899999999999999999999999998755443

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.84  E-value=6.4e-21  Score=128.57  Aligned_cols=125  Identities=23%  Similarity=0.300  Sum_probs=86.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++.........  ....++..|++||.+.+..++.++|+||+|+++|++++ |..||...  
T Consensus       148 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~--  225 (277)
T cd05062         148 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGM--  225 (277)
T ss_pred             heEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCC--
Confidence            59999999999999999987543322111  11234567999999988888899999999999999998 67887522  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           .............. ...+....   ..+.+++.+||+.||++|||+.+++.++
T Consensus       226 -----~~~~~~~~~~~~~~-~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~e~l~~l  275 (277)
T cd05062         226 -----SNEQVLRFVMEGGL-LDKPDNCP---DMLFELMRMCWQYNPKMRPSFLEIISSI  275 (277)
T ss_pred             -----CHHHHHHHHHcCCc-CCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHh
Confidence                 11122222222211 11111111   2357899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.84  E-value=9.3e-21  Score=128.67  Aligned_cols=130  Identities=23%  Similarity=0.297  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+........  ......++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       152 ~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  230 (291)
T cd05094         152 RNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS-  230 (291)
T ss_pred             ceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            589999999999999999875433211  1122345678999999988888889999999999999998 999975222 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ... ....+............   ...+.+++.+||+.+|++|||++++++.+....+
T Consensus       231 ------~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~  284 (291)
T cd05094         231 ------NTE-VIECITQGRVLERPRVC---PKEVYDIMLGCWQREPQQRLNIKEIYKILHALGK  284 (291)
T ss_pred             ------HHH-HHHHHhCCCCCCCCccC---CHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHh
Confidence                  111 11222222111111111   2235789999999999999999999998876643

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.84  E-value=4.1e-21  Score=137.25  Aligned_cols=129  Identities=24%  Similarity=0.311  Sum_probs=100.5

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcccccc-ccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~-~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      |+|+.++..||+.|||+++.+..+........ -...|.|||.+.+..++.++|+|+|||++||+.+ |..||...    
T Consensus       395 NCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYPGi----  470 (1157)
T KOG4278|consen  395 NCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGI----  470 (1157)
T ss_pred             hccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCCCc----
Confidence            78999999999999999999887654433322 3447999999999999999999999999999996 88887522    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          .......++.+.+....+..|+..+   -+||+.||+..|.+||++.++.+.+..+-.
T Consensus       471 ----dlSqVY~LLEkgyRM~~PeGCPpkV---YeLMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  471 ----DLSQVYGLLEKGYRMDGPEGCPPKV---YELMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             ----cHHHHHHHHhccccccCCCCCCHHH---HHHHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence                2344555666666555555555554   468999999999999999999888776543

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.84  E-value=3.9e-21  Score=127.95  Aligned_cols=127  Identities=27%  Similarity=0.381  Sum_probs=92.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............+++.|++||.+.+...+.++|+||+|++++++++|..||....    
T Consensus       132 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~----  207 (258)
T cd08215         132 QNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGEN----  207 (258)
T ss_pred             HHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCCc----
Confidence            4899999999999999998765444323333457788999999888888889999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         ......... .....+.+...   ...+.+++.+||..+|++|||+++++.|+|+
T Consensus       208 ---~~~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         208 ---LLELALKIL-KGQYPPIPSQY---SSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             ---HHHHHHHHh-cCCCCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence               122222222 22222222211   1234779999999999999999999999885

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.84  E-value=2.4e-21  Score=131.43  Aligned_cols=132  Identities=28%  Similarity=0.417  Sum_probs=96.4

Q ss_pred             CceeecCC------CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSN------LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~------~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      .||||+.+      -.+||+|||+++.+.. .....+.+|++.|||||++..++|+.++|+||+|+++|++++|++||+ 
T Consensus       138 QNiLLs~~~~~~~~~~LKIADFGfAR~L~~-~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~-  215 (429)
T KOG0595|consen  138 QNILLSTTARNDTSPVLKIADFGFARFLQP-GSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD-  215 (429)
T ss_pred             ceEEeccCCCCCCCceEEecccchhhhCCc-hhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc-
Confidence            48999865      4579999999997753 344456889999999999999999999999999999999999999997 


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ...+..............+........  ...+++...+..++..|.+.++.+.|++.....
T Consensus       216 ------a~t~~eL~~~~~k~~~~~~~~~~~~s~--~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  216 ------AETPKELLLYIKKGNEIVPVLPAELSN--PLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             ------ccCHHHHHHHHhccccccCchhhhccC--chhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence                  222333333222222222222222222  124677788899999999999999998887644

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.84  E-value=1.5e-20  Score=126.31  Aligned_cols=126  Identities=24%  Similarity=0.366  Sum_probs=88.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||++++++.+||+|||.++.+.......  .....+..|++||.+....++.++|+||+|+++|++++ |.+||.... 
T Consensus       142 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~-  220 (273)
T cd05035         142 RNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE-  220 (273)
T ss_pred             heEEECCCCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC-
Confidence            58999999999999999998654332211  11224567999999887778899999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ... ....+......+.+...   ...+.+++.+||+.||++|||+.+++.++.
T Consensus       221 ------~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~e~~~~l~  270 (273)
T cd05035         221 ------NHE-IYDYLRHGNRLKQPEDC---LDELYDLMYSCWRADPKDRPTFTKLREVLE  270 (273)
T ss_pred             ------HHH-HHHHHHcCCCCCCCcCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                  111 22222222222222222   223578999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.84  E-value=3.5e-21  Score=131.59  Aligned_cols=133  Identities=20%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||.+........    ......++..|+|||.+.+.. ++.++|+||+|++++++++|.+||...
T Consensus       148 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~  227 (310)
T cd07865         148 ANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN  227 (310)
T ss_pred             HHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            489999999999999999876543221    112234677899999876543 577899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcC-------------------CCCCCCHHHHH------HHHHHHHHHHhhhccCCCCCCCHH
Q 040414           76 SSLSSSSDPKIMLIDVLDQR-------------------LPPPVDQKVIQ------DILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~------~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      ....    ....+.. +...                   .+.........      ....+.+++.+||..||++|||++
T Consensus       228 ~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli~~~l~~~P~~R~t~~  302 (310)
T cd07865         228 TEQH----QLTLISQ-LCGSITPEVWPGVDKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLIDKLLVLDPAKRIDAD  302 (310)
T ss_pred             CHHH----HHHHHHH-HhCCCChhhcccccchhhhhhccCCCccchhhHHhcccccCCHHHHHHHHHHhcCChhhccCHH
Confidence            2100    0000000 0000                   00000000000      112356899999999999999999


Q ss_pred             HHHHHHhh
Q 040414          131 YVSQEFLI  138 (160)
Q Consensus       131 ~~~~~~~~  138 (160)
                      ++++|+||
T Consensus       303 e~l~h~~f  310 (310)
T cd07865         303 TALNHDFF  310 (310)
T ss_pred             HHhcCCCC
Confidence            99999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.84  E-value=1.7e-20  Score=125.65  Aligned_cols=130  Identities=20%  Similarity=0.263  Sum_probs=91.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.++.............++..|.+||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       135 ~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  210 (267)
T cd08224         135 ANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDK----  210 (267)
T ss_pred             hhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCC----
Confidence            5899999999999999998765443332333457778999999988878889999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        ................+.+..  .....+.+++.+||+.+|++|||+.++++.+.-
T Consensus       211 --~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~  264 (267)
T cd08224         211 --MNLYSLCKKIEKCDYPPLPAD--HYSEELRDLVSRCINPDPEKRPDISYVLQVAKE  264 (267)
T ss_pred             --ccHHHHHhhhhcCCCCCCChh--hcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHH
Confidence              011111111212222222221  112235789999999999999999999887653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.84  E-value=1.1e-20  Score=127.48  Aligned_cols=131  Identities=24%  Similarity=0.344  Sum_probs=90.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.........  ....+++.|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       138 ~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-  216 (279)
T cd05109         138 RNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIP-  216 (279)
T ss_pred             ceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence            58999999999999999998664322211  11223567999999988888889999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                             .......+......+.....   ...+.+++.+||+.||+.||++.+++..+......
T Consensus       217 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05109         217 -------AREIPDLLEKGERLPQPPIC---TIDVYMIMVKCWMIDSECRPRFRELVDEFSRMARD  271 (279)
T ss_pred             -------HHHHHHHHHCCCcCCCCccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhcC
Confidence                   11122222222222211111   12346899999999999999999999876655444

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.84  E-value=4e-21  Score=129.69  Aligned_cols=136  Identities=20%  Similarity=0.190  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++. +.+||+|||.++........ ....++..|++||.+.. ...+.++|+||+|+++++|++|.+||.......
T Consensus       129 ~ni~l~~-~~~kl~dfg~~~~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~  206 (282)
T cd07831         129 ENILIKD-DILKLADFGSCRGIYSKPPY-TEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELD  206 (282)
T ss_pred             HHEEEcC-CCeEEEecccccccccCCCc-CCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHH
Confidence            4899999 99999999999866433222 22446788999997654 445778999999999999999999986322110


Q ss_pred             C-------CCCchhhHHHhhhcC------CCCCCC----HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLIDVLDQR------LPPPVD----QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~~~~------~~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...............      .+....    .........+.+++.+||+.+|++||+++++++|+|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         207 QIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             HHHHHHHHcCCCCHHHHHhhcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            0       000000000000000      000000    0011123456899999999999999999999999986

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.84  E-value=2.9e-21  Score=131.09  Aligned_cols=138  Identities=19%  Similarity=0.228  Sum_probs=86.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.............++..|++||.+.+. .++.++|+||+|+++|+|++|.+||.......
T Consensus       132 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~~~~  211 (291)
T cd07844         132 QNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGSTDVE  211 (291)
T ss_pred             HHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCCccHH
Confidence            48999999999999999987543222222223456789999988653 46788999999999999999999985322100


Q ss_pred             C--------CCCchhhHH-Hhhh------cC--C--CCCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S--------SSDPKIMLI-DVLD------QR--L--PPPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~--------~~~~~~~~~-~~~~------~~--~--~~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .        ...+..... ....      ..  .  ..+....  .......+.+++.+||+.+|++|||+.+++.|+||
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         212 DQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFPFYPPRPLINHAPRLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             HHHHHHHHhcCCCChhhhhhhhhccccccccccccCChhHHHhCcCCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            0        000000000 0000      00  0  0000000  00001345789999999999999999999999986

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.84  E-value=1.1e-20  Score=126.52  Aligned_cols=126  Identities=25%  Similarity=0.325  Sum_probs=88.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+........... ....+..|++||.+.+...+.++|+||+|+++|++++ |..||....  
T Consensus       133 ~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~--  210 (263)
T cd05052         133 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--  210 (263)
T ss_pred             ceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCC--
Confidence            589999999999999999876543321111 1223457999999988888889999999999999998 888875211  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            .......+......+.+....   ..+.+++.+||..||++|||+.++++.+.
T Consensus       211 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rp~~~~l~~~l~  260 (263)
T cd05052         211 ------LSQVYELLEKGYRMERPEGCP---PKVYELMRACWQWNPSDRPSFAEIHQAFE  260 (263)
T ss_pred             ------HHHHHHHHHCCCCCCCCCCCC---HHHHHHHHHHccCCcccCCCHHHHHHHHH
Confidence                  111222222222222222222   23578999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.84  E-value=3.3e-21  Score=131.13  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=88.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +|||++.++.++|+|||+++.......       ......||+.|+|||...+..++.++|+||+|++++++++|..||.
T Consensus       155 ~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~  234 (294)
T PHA02882        155 ENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWK  234 (294)
T ss_pred             HHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence            599999999999999999986532211       1122458899999999988888999999999999999999999997


Q ss_pred             cccccCCCCC-c-hhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           74 LLSSLSSSSD-P-KIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        74 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .......... . ..............+.   .   ...+.+++..||..+|++||+++++.+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~rp~~~~l~~~~  293 (294)
T PHA02882        235 GFGHNGNLIHAAKCDFIKRLHEGKIKIKN---A---NKFIYDFIECVTKLSYEEKPDYDALIKIF  293 (294)
T ss_pred             ccccchHHHHHhHHHHHHHhhhhhhccCC---C---CHHHHHHHHHHHhCCCCCCCCHHHHHHhh
Confidence            4321110000 0 0001111111111111   1   12356899999999999999999997653

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.84  E-value=2.7e-21  Score=132.04  Aligned_cols=129  Identities=20%  Similarity=0.215  Sum_probs=83.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh--cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM--GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~--g~~~~~~~~   76 (160)
                      +|||++.++.+||+|||+++.+.....  ......++..|+|||.+..+.++.++|+||+|+++|++++  +..||....
T Consensus       167 ~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  246 (304)
T cd05096         167 RNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELT  246 (304)
T ss_pred             hheEEcCCccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCC
Confidence            599999999999999999876533221  1122334678999999988888899999999999999986  455665221


Q ss_pred             ccCCCCCchhhHHHhhhc---CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           77 SLSSSSDPKIMLIDVLDQ---RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ...    ...........   ......+..++   ..+.+++.+||+.||.+|||+++|...+
T Consensus       247 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~RPs~~~i~~~l  302 (304)
T cd05096         247 DEQ----VIENAGEFFRDQGRQVYLFRPPPCP---QGLYELMLQCWSRDCRERPSFSDIHAFL  302 (304)
T ss_pred             HHH----HHHHHHHHhhhccccccccCCCCCC---HHHHHHHHHHccCCchhCcCHHHHHHHH
Confidence            100    00000010000   00000011111   2357899999999999999999997654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=2.1e-21  Score=136.17  Aligned_cols=131  Identities=20%  Similarity=0.268  Sum_probs=88.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----------------------------------------------cccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----------------------------------------------NRTLLA   33 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----------------------------------------------~~~~~~   33 (160)
                      +|||++.++.+||+|||+++.......                                               ......
T Consensus       130 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (377)
T cd05629         130 DNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTV  209 (377)
T ss_pred             HHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccC
Confidence            489999999999999999863211000                                               001235


Q ss_pred             ccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 040414           34 GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST  113 (160)
Q Consensus        34 ~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (160)
                      ||+.|+|||++.+..++.++|+||+||++|+|++|.+||....       .................+.. ......+.+
T Consensus       210 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~-------~~~~~~~i~~~~~~~~~p~~-~~~s~~~~d  281 (377)
T cd05629         210 GTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSEN-------SHETYRKIINWRETLYFPDD-IHLSVEAED  281 (377)
T ss_pred             CCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCC-------HHHHHHHHHccCCccCCCCC-CCCCHHHHH
Confidence            8889999999988888999999999999999999999986221       11222222211111111110 011223578


Q ss_pred             HHHhhhccCCCCC---CCHHHHHHHHhhhc
Q 040414          114 ISFACLQSNPKSR---PTMQYVSQEFLITR  140 (160)
Q Consensus       114 l~~~cl~~dp~~R---ps~~~~~~~~~~~~  140 (160)
                      |+.+||. +|.+|   +++++++.|+|+..
T Consensus       282 li~~lL~-~~~~r~~r~~~~~~l~hp~~~~  310 (377)
T cd05629         282 LIRRLIT-NAENRLGRGGAHEIKSHPFFRG  310 (377)
T ss_pred             HHHHHhc-CHhhcCCCCCHHHHhcCCCcCC
Confidence            8989997 66654   69999999999975

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.84  E-value=1.6e-20  Score=125.23  Aligned_cols=125  Identities=26%  Similarity=0.383  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+.......  .......++..|++||.+....++.++|+||+|++++++++ |..||.... 
T Consensus       134 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-  212 (262)
T cd00192         134 RNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS-  212 (262)
T ss_pred             ceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC-
Confidence            59999999999999999998665432  11222345778999999888778889999999999999998 588886331 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                             .......+........+...   ...+.+++.+||..+|++|||+++++.++
T Consensus       213 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~l~~~l  261 (262)
T cd00192         213 -------NEEVLEYLRKGYRLPKPEYC---PDELYELMLSCWQLDPEDRPTFSELVERL  261 (262)
T ss_pred             -------HHHHHHHHHcCCCCCCCccC---ChHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                   11222222222222222221   22357899999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.84  E-value=1e-20  Score=127.16  Aligned_cols=126  Identities=27%  Similarity=0.336  Sum_probs=88.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.+......  ......++.|++||.+....++.++|+||+|+++|++++ |..||.... 
T Consensus       141 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-  219 (272)
T cd05075         141 RNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE-  219 (272)
T ss_pred             hheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence            5899999999999999999865433211  112234567999999988888889999999999999998 788886221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ... ....+......+......   ..+.+++.+||+.||++|||++++++.+.
T Consensus       220 ------~~~-~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~l~~~l~  269 (272)
T cd05075         220 ------NSE-IYDYLRQGNRLKQPPDCL---DGLYSLMSSCWLLNPKDRPSFETLRCELE  269 (272)
T ss_pred             ------HHH-HHHHHHcCCCCCCCCCCC---HHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                  111 222222211111111111   23578999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=2.9e-21  Score=141.30  Aligned_cols=133  Identities=21%  Similarity=0.357  Sum_probs=102.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-----CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-----VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-----~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      .|||++.++.|||+|||++..+........+.+||+.|||||++.-.     .++.++|+||+|++..||..|.+|+...
T Consensus       152 ~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm  231 (953)
T KOG0587|consen  152 QNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM  231 (953)
T ss_pred             ceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCc
Confidence            48999999999999999999988777777888999999999998643     2567899999999999999999997533


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      -++.        ..=.+.+.+|+.. .....-...+-+||..||.+|-.+||++.++++|+|+++..
T Consensus       232 HPmr--------aLF~IpRNPPPkL-krp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~  289 (953)
T KOG0587|consen  232 HPMR--------ALFLIPRNPPPKL-KRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFITEQP  289 (953)
T ss_pred             chhh--------hhccCCCCCCccc-cchhhHHHHHHHHHHHHHhhccccCcchhhhccCCcccccc
Confidence            2221        1111222333322 22223334467899999999999999999999999999544

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.84  E-value=9.3e-21  Score=126.99  Aligned_cols=127  Identities=19%  Similarity=0.255  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCC---CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++......   .......++..|++||.+.+...+.++|+||+|+++|++++|..||.... 
T Consensus       135 ~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-  213 (265)
T cd06652         135 ANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFE-  213 (265)
T ss_pred             HHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccc-
Confidence            48999999999999999987543211   11122346778999999988778889999999999999999999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ..............+..+.   .....+.+++.+||. +|+.||+++++++|+|+
T Consensus       214 ------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~  264 (265)
T cd06652         214 ------AMAAIFKIATQPTNPVLPP---HVSDHCRDFLKRIFV-EAKLRPSADELLRHTFV  264 (265)
T ss_pred             ------hHHHHHHHhcCCCCCCCch---hhCHHHHHHHHHHhc-ChhhCCCHHHHhcCccc
Confidence                  1122222221111121221   122335678888885 89999999999999986

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.84  E-value=1.2e-20  Score=127.63  Aligned_cols=126  Identities=21%  Similarity=0.344  Sum_probs=88.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......++..|++||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       153 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~-  231 (283)
T cd05090         153 RNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS-  231 (283)
T ss_pred             ceEEEcCCCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC-
Confidence            589999999999999999876543221  1122334567999999988888899999999999999998 888875211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            . .............+.+....   ..+.+++.+||+.||++||++.++++++-
T Consensus       232 ------~-~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rp~~~~i~~~l~  281 (283)
T cd05090         232 ------N-QEVIEMVRKRQLLPCSEDCP---PRMYSLMTECWQEGPSRRPRFKDIHTRLR  281 (283)
T ss_pred             ------H-HHHHHHHHcCCcCCCCCCCC---HHHHHHHHHHcccCcccCcCHHHHHHHhh
Confidence                  1 11222222222222222122   23477999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.84  E-value=7.1e-21  Score=129.19  Aligned_cols=127  Identities=21%  Similarity=0.267  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||++......   .....+++.|++||.+.+...+.++|+||+|++++++++|..||....    
T Consensus       130 ~nili~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  202 (290)
T cd05580         130 ENLLLDSDGYIKITDFGFAKRVKGR---TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDN----  202 (290)
T ss_pred             HHEEECCCCCEEEeeCCCccccCCC---CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----
Confidence            4899999999999999998765433   223457888999999887777888999999999999999999986222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~~  142 (160)
                         ...............+  ...   ...+.+++.+||..||++|+     ++++++.|+|+....
T Consensus       203 ---~~~~~~~~~~~~~~~~--~~~---~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  261 (290)
T cd05580         203 ---PIQIYEKILEGKVRFP--SFF---SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID  261 (290)
T ss_pred             ---HHHHHHHHhcCCccCC--ccC---CHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence               1122222222222211  111   22347899999999999999     999999999987643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.84  E-value=3.1e-21  Score=131.14  Aligned_cols=135  Identities=20%  Similarity=0.155  Sum_probs=89.7

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++. ++.+||+|||.+..............+++.|++||.+.+. .++.++|+||+|++++++++|.+||......
T Consensus       131 ~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf~~~~~~  210 (294)
T PLN00009        131 QNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLFPGDSEI  210 (294)
T ss_pred             ceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            5899985 5678999999987654332222334567889999988654 4678899999999999999999998532110


Q ss_pred             CCCCCchhhHHHhh-----------------------hcCCCCCCCH-HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           79 SSSSDPKIMLIDVL-----------------------DQRLPPPVDQ-KVIQDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        79 ~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                             ....+..                       .......... ........+.+++.+||+.+|++||+++++++
T Consensus       211 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~  283 (294)
T PLN00009        211 -------DELFKIFRILGTPNEETWPGVTSLPDYKSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALE  283 (294)
T ss_pred             -------HHHHHHHHHhCCCChhhccccccchhhhhhcccCCCCCHHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhc
Confidence                   0010000                       0000000000 00111223578999999999999999999999


Q ss_pred             HHhhhccC
Q 040414          135 EFLITRKT  142 (160)
Q Consensus       135 ~~~~~~~~  142 (160)
                      |+|+....
T Consensus       284 ~~~~~~~~  291 (294)
T PLN00009        284 HEYFKDLG  291 (294)
T ss_pred             CchHhHHh
Confidence            99998743

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.84  E-value=1.3e-20  Score=127.28  Aligned_cols=125  Identities=21%  Similarity=0.278  Sum_probs=86.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||++++++.++|+|||++.........  .....+++.|++||.+.+..++.++|+||+|+++|++++ |.+||.... 
T Consensus       151 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-  229 (280)
T cd05092         151 RNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS-  229 (280)
T ss_pred             hhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC-
Confidence            5899999999999999998755432211  112234567999999988888899999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                            ........... .....+...+   ..+.+++.+||+.||++||+++++...+
T Consensus       230 ------~~~~~~~~~~~-~~~~~~~~~~---~~~~~li~~cl~~~P~~Rp~~~~l~~~l  278 (280)
T cd05092         230 ------NTEAIECITQG-RELERPRTCP---PEVYAIMQGCWQREPQQRMVIKDIHSRL  278 (280)
T ss_pred             ------HHHHHHHHHcC-ccCCCCCCCC---HHHHHHHHHHccCChhhCCCHHHHHHHH
Confidence                  11112222221 1111111111   2347899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.84  E-value=1.5e-20  Score=125.54  Aligned_cols=127  Identities=25%  Similarity=0.362  Sum_probs=88.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcccc---ccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTL---LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~---~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++...........   ..++..|++||.+.+..++.++|+||+|+++|++++ |.+||....
T Consensus       124 ~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~  203 (257)
T cd05060         124 RNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMK  203 (257)
T ss_pred             ceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCC
Confidence            5899999999999999998866433222111   112346999999988888889999999999999997 999986322


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .        ......+......+.+....   ..+.+++.+||..+|++||++.+++..+.-
T Consensus       204 ~--------~~~~~~~~~~~~~~~~~~~~---~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~  254 (257)
T cd05060         204 G--------AEVIAMLESGERLPRPEECP---QEIYSIMLSCWKYRPEDRPTFSELESTFRR  254 (257)
T ss_pred             H--------HHHHHHHHcCCcCCCCCCCC---HHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence            1        11222222222212211111   235789999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.84  E-value=1.2e-21  Score=137.35  Aligned_cols=129  Identities=24%  Similarity=0.308  Sum_probs=87.7

Q ss_pred             CceeecCCCceEEcccccceeccCCC-------------------------------------------Ccccccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-------------------------------------------SNRTLLAGTYG   37 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-------------------------------------------~~~~~~~~~~~   37 (160)
                      +|||++.++.+||+|||++..+....                                           .......|++.
T Consensus       130 ~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  209 (376)
T cd05598         130 DNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPN  209 (376)
T ss_pred             HHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCcc
Confidence            48999999999999999874221000                                           00012468899


Q ss_pred             ccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHH
Q 040414           38 YIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS  115 (160)
Q Consensus        38 ~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~  115 (160)
                      |+|||++.+..++.++|+||+||++|+|++|..||....       ...........  ....+....   ....+.+++
T Consensus       210 y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~-------~~~~~~~i~~~~~~~~~~~~~~---~s~~~~~li  279 (376)
T cd05598         210 YIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADT-------PAETQLKVINWETTLHIPSQAK---LSREASDLI  279 (376)
T ss_pred             ccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCC-------HHHHHHHHhccCccccCCCCCC---CCHHHHHHH
Confidence            999999988888899999999999999999999986322       11111111111  111111111   112245677


Q ss_pred             HhhhccCCCCCC---CHHHHHHHHhhhc
Q 040414          116 FACLQSNPKSRP---TMQYVSQEFLITR  140 (160)
Q Consensus       116 ~~cl~~dp~~Rp---s~~~~~~~~~~~~  140 (160)
                      .+|+ .+|.+|+   ++++++.|+|+..
T Consensus       280 ~~l~-~~p~~R~~~~t~~ell~h~~~~~  306 (376)
T cd05598         280 LRLC-CGAEDRLGKNGADEIKAHPFFKG  306 (376)
T ss_pred             HHHh-cCHhhcCCCCCHHHHhCCCCcCC
Confidence            7765 4999999   9999999999975

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.84  E-value=1.4e-20  Score=127.70  Aligned_cols=130  Identities=22%  Similarity=0.256  Sum_probs=89.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++........  .....++..|+|||.+.+..++.++|+||+|+++++|++ |.+||.... 
T Consensus       149 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~-  227 (288)
T cd05093         149 RNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS-  227 (288)
T ss_pred             ceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            5899999999999999998755332211  112234567999999988888889999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ......... ...........   ...+.+++.+||+.||.+|||+++++..+....+
T Consensus       228 ------~~~~~~~i~-~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~  281 (288)
T cd05093         228 ------NNEVIECIT-QGRVLQRPRTC---PKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAK  281 (288)
T ss_pred             ------HHHHHHHHH-cCCcCCCCCCC---CHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHH
Confidence                  111111211 11111111111   1235789999999999999999999887765543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.84  E-value=1.5e-20  Score=128.37  Aligned_cols=127  Identities=22%  Similarity=0.337  Sum_probs=88.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++++|||.++........  .....++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       170 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~-  248 (302)
T cd05055         170 RNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP-  248 (302)
T ss_pred             ceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC-
Confidence            5899999999999999998865433211  112234567999999988888889999999999999998 899986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            .................+...   ...+.+++.+||+.+|++|||+.+++..+.
T Consensus       249 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~cl~~~p~~Rpt~~ell~~l~  299 (302)
T cd05055         249 ------VDSKFYKLIKEGYRMAQPEHA---PAEIYDIMKTCWDADPLKRPTFKQIVQLIG  299 (302)
T ss_pred             ------chHHHHHHHHcCCcCCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence                  111222222222221111111   123578999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.84  E-value=1.1e-20  Score=126.29  Aligned_cols=126  Identities=27%  Similarity=0.411  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.+..............++..|++||.+....++.++|+||+|++++++++ |..||....   
T Consensus       133 ~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~---  209 (261)
T cd05148         133 RNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMN---  209 (261)
T ss_pred             ceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCC---
Confidence            5899999999999999998765433222223334567999999988778889999999999999998 888885222   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                          ......... .....+.+...   ...+.+++.+||..||++|||+.++.+.+.
T Consensus       210 ----~~~~~~~~~-~~~~~~~~~~~---~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~  259 (261)
T cd05148         210 ----NHEVYDQIT-AGYRMPCPAKC---PQEIYKIMLECWAAEPEDRPSFKALREELD  259 (261)
T ss_pred             ----HHHHHHHHH-hCCcCCCCCCC---CHHHHHHHHHHcCCCchhCcCHHHHHHHHh
Confidence                112222221 22222221111   223578999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.84  E-value=1.5e-20  Score=125.45  Aligned_cols=123  Identities=17%  Similarity=0.277  Sum_probs=86.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.++......   .....+..|++||.+....++.++|+||+|+++|++++ |..||...    
T Consensus       131 ~nil~~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~----  203 (256)
T cd05082         131 RNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI----  203 (256)
T ss_pred             heEEEcCCCcEEecCCccceeccccC---CCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCC----
Confidence            58999999999999999987543322   12234557999999988778889999999999999997 88887521    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                         . .......+............   ...+.+++.+||+.+|++|||++++++.+.
T Consensus       204 ---~-~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  254 (256)
T cd05082         204 ---P-LKDVVPRVEKGYKMDAPDGC---PPVVYDVMKQCWHLDAATRPSFLQLREQLE  254 (256)
T ss_pred             ---C-HHHHHHHHhcCCCCCCCCCC---CHHHHHHHHHHhcCChhhCcCHHHHHHHHh
Confidence               1 11112222222222221111   223578999999999999999999988763

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.84  E-value=1.3e-20  Score=126.02  Aligned_cols=127  Identities=24%  Similarity=0.270  Sum_probs=86.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc-CCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG-KHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g-~~~~~~~   75 (160)
                      +||+++.++.+||+|||+++.+.....    ......++..|++||.+....++.++|+||+|+++|++++| .+||...
T Consensus       127 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~  206 (262)
T cd05058         127 RNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  206 (262)
T ss_pred             ceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            589999999999999999875433211    11122345679999999888888899999999999999995 5666421


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             ............ ...+.+...+   ..+.+++.+||+.+|++||++.+++..+..
T Consensus       207 -------~~~~~~~~~~~~-~~~~~~~~~~---~~~~~li~~cl~~~p~~Rp~~~~il~~l~~  258 (262)
T cd05058         207 -------DSFDITVYLLQG-RRLLQPEYCP---DPLYEVMLSCWHPKPEMRPTFSELVSRIEQ  258 (262)
T ss_pred             -------CHHHHHHHHhcC-CCCCCCCcCC---HHHHHHHHHHcCCChhhCCCHHHHHHHHHH
Confidence                   111112222221 1111111111   235789999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.84  E-value=1.7e-20  Score=125.16  Aligned_cols=126  Identities=25%  Similarity=0.351  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++........   .....++..|++||.+....++.++|+||+|+++++|++ |..||....
T Consensus       126 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  205 (257)
T cd05040         126 RNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLS  205 (257)
T ss_pred             ccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCC
Confidence            5899999999999999998876442211   112345668999999988888889999999999999998 999985221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                             .................+..   ....+.+++.+||+.+|++|||+.++++.+
T Consensus       206 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~~~~~l  255 (257)
T cd05040         206 -------GSQILKKIDKEGERLERPEA---CPQDIYNVMLQCWAHNPADRPTFAALREFL  255 (257)
T ss_pred             -------HHHHHHHHHhcCCcCCCCcc---CCHHHHHHHHHHCCCCcccCCCHHHHHHHh
Confidence                   12122222111111111111   122357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.83  E-value=1.2e-20  Score=126.71  Aligned_cols=125  Identities=23%  Similarity=0.350  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+....... ......++..|++||.+.+..++.++|+||+|+++|++++|.+||....    
T Consensus       143 ~nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~----  217 (269)
T cd08528         143 NNIMLGEDDKVTITDFGLAKQKQPES-KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN----  217 (269)
T ss_pred             HHEEECCCCcEEEecccceeeccccc-ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC----
Confidence            48999999999999999988654332 2233457788999999988878889999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                         ............. .+....  .....+.+++.+||+.||++||++.++..++
T Consensus       218 ---~~~~~~~~~~~~~-~~~~~~--~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~  267 (269)
T cd08528         218 ---MLSLATKIVEAVY-EPLPEG--MYSEDVTDVITSCLTPDAEARPDIIQVSAMI  267 (269)
T ss_pred             ---HHHHHHHHhhccC-CcCCcc--cCCHHHHHHHHHHCCCCCccCCCHHHHHHHh
Confidence               1111112211211 111110  1112357899999999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.83  E-value=5.4e-21  Score=127.80  Aligned_cols=130  Identities=22%  Similarity=0.323  Sum_probs=93.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +||+++.++.++|+|||++........        ......++..|++||.......+.++|+||+|++++++++|..||
T Consensus       122 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~  201 (265)
T cd05579         122 DNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPF  201 (265)
T ss_pred             HHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            489999999999999998875433211        122244677899999988777788999999999999999999998


Q ss_pred             ccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH---HHHHHHHhhhc
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM---QYVSQEFLITR  140 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~---~~~~~~~~~~~  140 (160)
                      ....       ...............+....   ....+.+++.+||+.+|+.|||+   .++++|+|+..
T Consensus       202 ~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         202 HGET-------PEEIFQNILNGKIEWPEDVE---VSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             CCCC-------HHHHHHHHhcCCcCCCcccc---CCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccC
Confidence            6221       22222222222222221111   12335789999999999999999   99999999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.83  E-value=2.1e-20  Score=125.01  Aligned_cols=126  Identities=26%  Similarity=0.393  Sum_probs=88.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+........ ......++..|++||.+....++.++|+||+|++++++++ |.+||....  
T Consensus       131 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--  208 (260)
T cd05067         131 ANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT--  208 (260)
T ss_pred             HhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC--
Confidence            589999999999999999876542221 1122334567999999988878889999999999999998 999986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           .. .....+......+.+...   ...+.+++.+||..+|++|||++++...+.
T Consensus       209 -----~~-~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  258 (260)
T cd05067         209 -----NP-EVIQNLERGYRMPRPDNC---PEELYELMRLCWKEKPEERPTFEYLRSVLE  258 (260)
T ss_pred             -----hH-HHHHHHHcCCCCCCCCCC---CHHHHHHHHHHccCChhhCCCHHHHHHHhh
Confidence                 11 122222222222222211   123578999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.83  E-value=1.4e-20  Score=125.34  Aligned_cols=126  Identities=21%  Similarity=0.402  Sum_probs=88.9

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.+ +.++|+|||.+........ .....++..|++||.+.+...+.++|+||+|++++++++|..||....   
T Consensus       130 ~nil~~~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~---  205 (256)
T cd08220         130 QNILLDKHKMVVKIGDFGISKILSSKSK-AYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN---  205 (256)
T ss_pred             HHEEEcCCCCEEEEccCCCceecCCCcc-ccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc---
Confidence            48899754 4679999999886543322 223457788999999988778889999999999999999999986221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          ............. .+.....   ...+.+++.+||+.+|++|||+++++.|+|+
T Consensus       206 ----~~~~~~~~~~~~~-~~~~~~~---~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         206 ----LPALVLKIMSGTF-APISDRY---SPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             ----hHHHHHHHHhcCC-CCCCCCc---CHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence                1222222222211 1111111   1234789999999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.83  E-value=2e-20  Score=125.11  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+......... .....++..|++||.+....++.++|+||+|+++|++++ |..||....  
T Consensus       132 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--  209 (261)
T cd05072         132 ANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMS--  209 (261)
T ss_pred             hhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCC--
Confidence            5899999999999999999865432211 112234567999999988878889999999999999998 888985221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ... ....+......+.....   ...+.+++.+||+.+|++||+++++.+.+
T Consensus       210 -----~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  258 (261)
T cd05072         210 -----NSD-VMSALQRGYRMPRMENC---PDELYDIMKTCWKEKAEERPTFDYLQSVL  258 (261)
T ss_pred             -----HHH-HHHHHHcCCCCCCCCCC---CHHHHHHHHHHccCCcccCcCHHHHHHHH
Confidence                 111 12222222222221111   12357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.83  E-value=9.2e-21  Score=126.17  Aligned_cols=129  Identities=27%  Similarity=0.409  Sum_probs=93.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+........  ......++..|.+||.......+.++|+||+|++++++++|..||....  
T Consensus       130 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--  207 (260)
T cd06606         130 ANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELG--  207 (260)
T ss_pred             HHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC--
Confidence            489999999999999999887654432  1233457778999999988778889999999999999999999986322  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          ..................+...   ...+.+++.+||..+|++||++.+++.|+|+
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         208 ----NPMAALYKIGSSGEPPEIPEHL---SEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             ----chHHHHHhccccCCCcCCCccc---CHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence                1111222222111222222222   2345789999999999999999999999985

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.83  E-value=8.9e-21  Score=131.23  Aligned_cols=141  Identities=28%  Similarity=0.269  Sum_probs=91.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||.++.......     ......++..|++||.+.+. ..+.++|+||+|+++|++++|++||..
T Consensus       136 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~pf~~  215 (337)
T cd07852         136 SNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPLFPG  215 (337)
T ss_pred             HHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCCCCC
Confidence            489999999999999999876543221     12234578889999987653 467789999999999999999999853


Q ss_pred             ccccCC-------CCCchhhH---------HHhhh---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           75 LSSLSS-------SSDPKIML---------IDVLD---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        75 ~~~~~~-------~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                      ......       ........         ...+.   .....+...........+.+++.+||+.||++|||+.++++|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~  295 (337)
T cd07852         216 TSTLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPSRPRKPLDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEH  295 (337)
T ss_pred             CChHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhcccccccchhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhC
Confidence            221100       00000000         00000   000000000001112345789999999999999999999999


Q ss_pred             Hhhhcc
Q 040414          136 FLITRK  141 (160)
Q Consensus       136 ~~~~~~  141 (160)
                      +|+...
T Consensus       296 ~~~~~~  301 (337)
T cd07852         296 PYVAQF  301 (337)
T ss_pred             hhhhhh
Confidence            999764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.83  E-value=4.9e-21  Score=129.55  Aligned_cols=139  Identities=21%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+........ ......++..|++||.+.+.. ++.++|+||+|++++++++|.++|......
T Consensus       128 ~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~  207 (286)
T cd07832         128 ANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPLFPGENDI  207 (286)
T ss_pred             HHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcCcCCCCHH
Confidence            489999999999999999876543321 122345778899999886544 578899999999999999998887522110


Q ss_pred             CC-------CCCchh-hHH------HhhhcCCCC--CCC--HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SS-------SSDPKI-MLI------DVLDQRLPP--PVD--QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~-------~~~~~~-~~~------~~~~~~~~~--~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ..       ...+.. ...      .......+.  ...  .........+.+++.+||..+|.+|||+++++.|+|+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         208 EQLAIVFRTLGTPNEETWPGLTSLPDYNKITFPESKPIPLEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             HHHHHHHHHcCCCChHHHhhccCcchhhcccCCCCCcchHHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            00       000000 000      000000000  000  00011124567899999999999999999999999973

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.83  E-value=9.2e-21  Score=126.66  Aligned_cols=127  Identities=23%  Similarity=0.309  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.++....    .....++..|++||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       126 ~nil~~~~~~~~l~dfg~~~~~~~----~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~----  197 (260)
T cd05611         126 ENLLIDQTGHLKLTDFGLSRNGLE----NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAET----  197 (260)
T ss_pred             HHeEECCCCcEEEeecccceeccc----cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCC----
Confidence            489999999999999998875432    122446778999999988777889999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC---HHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFACLQSNPKSRPT---MQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps---~~~~~~~~~~~~~  141 (160)
                         .............  +.....   .....+.+++.+||+.+|++||+   +++++.|+|+...
T Consensus       198 ---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~~  257 (260)
T cd05611         198 ---PDAVFDNILSRRINWPEEVKE---FCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKSI  257 (260)
T ss_pred             ---HHHHHHHHHhcccCCCCcccc---cCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhcC
Confidence               1222222211111  111111   11223578999999999999995   5799999999763

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.83  E-value=9.5e-21  Score=143.19  Aligned_cols=122  Identities=22%  Similarity=0.249  Sum_probs=85.9

Q ss_pred             CceEEcccccceeccCCCCccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchh
Q 040414            9 LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKI   86 (160)
Q Consensus         9 ~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~   86 (160)
                      +.+||+|||++..+.... ......+++.|+|||++.+  ..++.++|||||||++|+|++|..||.....       ..
T Consensus       179 ~iVKLsDFGlAr~l~~~s-~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~~-------~~  250 (1021)
T PTZ00266        179 PIAKIGDFGLSKNIGIES-MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKANN-------FS  250 (1021)
T ss_pred             CceEEccCCccccccccc-cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCCc-------HH
Confidence            458999999998654322 2233468999999999864  3467889999999999999999999863221       12


Q ss_pred             hHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           87 MLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .....+...+..+...    ....+.+|+..||..+|.+||++.+++.|+|+....
T Consensus       251 qli~~lk~~p~lpi~~----~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i~  302 (1021)
T PTZ00266        251 QLISELKRGPDLPIKG----KSKELNILIKNLLNLSAKERPSALQCLGYQIIKNVG  302 (1021)
T ss_pred             HHHHHHhcCCCCCcCC----CCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhcC
Confidence            2222222222222111    122357899999999999999999999999998643

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.83  E-value=2.7e-20  Score=124.85  Aligned_cols=126  Identities=27%  Similarity=0.344  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.........  ....++..|++||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~-  213 (266)
T cd05033         135 RNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS-  213 (266)
T ss_pred             ceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC-
Confidence            58999999999999999998764222211  11234567999999988888899999999999999997 888875211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             .......+......+....   ....+.+++.+||+.+|++||+++++++++.
T Consensus       214 -------~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~  263 (266)
T cd05033         214 -------NQDVIKAVEDGYRLPPPMD---CPSALYQLMLDCWQKDRNERPTFSQIVSTLD  263 (266)
T ss_pred             -------HHHHHHHHHcCCCCCCCCC---CCHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                   1112222222111111111   1223578999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.83  E-value=1.2e-21  Score=131.04  Aligned_cols=125  Identities=30%  Similarity=0.479  Sum_probs=83.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||++++++.+||+|||.+.........  .........|++||.+....++.++||||||+++||+++ |..||...  
T Consensus       132 ~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~--  209 (259)
T PF07714_consen  132 SNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDY--  209 (259)
T ss_dssp             GGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTS--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence            4899999999999999999876322211  122335667999999988888899999999999999999 67887522  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ......... ......+.+..+...   +.+++.+||+.||++|||+.++++.+
T Consensus       210 -----~~~~~~~~~-~~~~~~~~~~~~~~~---~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  210 -----DNEEIIEKL-KQGQRLPIPDNCPKD---IYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             -----CHHHHHHHH-HTTEETTSBTTSBHH---HHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             -----ccccccccc-cccccceeccchhHH---HHHHHHHHcCCChhhCcCHHHHHhcC
Confidence                 122222222 222222222222222   35789999999999999999998754

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.83  E-value=1.6e-20  Score=128.74  Aligned_cols=128  Identities=23%  Similarity=0.295  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+.....    .....++..|++||.+.   ...++.++|+||+|++++++++|.+||.... 
T Consensus       150 ~nili~~~~~~kL~dfg~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~-  224 (313)
T cd06633         150 GNILLTEPGQVKLADFGSASKSSP----ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-  224 (313)
T ss_pred             hhEEECCCCCEEEeecCCCcccCC----CCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC-
Confidence            489999999999999998764321    12345778899999874   3456778999999999999999999986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            .............+.......   ...+.+++.+||+.+|.+||++++++.|+|+....
T Consensus       225 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         225 ------AMSALYHIAQNDSPTLQSNEW---TDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             ------hHHHHHHHHhcCCCCCCcccc---CHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence                  111122222111111111111   12357899999999999999999999999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.83  E-value=2.9e-20  Score=123.63  Aligned_cols=125  Identities=21%  Similarity=0.288  Sum_probs=86.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.........  .....+..|++||.+.++.++.++|+||+|++++++++ |..||.... 
T Consensus       122 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~-  200 (251)
T cd05041         122 RNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMS-  200 (251)
T ss_pred             ceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCC-
Confidence            58999999999999999987544221111  11122456999999988888899999999999999998 788875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                             .......+......+.+...   ...+.+++.+||..+|++|||++++++.+
T Consensus       201 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~ell~~l  249 (251)
T cd05041         201 -------NQQTRERIESGYRMPAPQLC---PEEIYRLMLQCWAYDPENRPSFSEIYNEL  249 (251)
T ss_pred             -------HHHHHHHHhcCCCCCCCccC---CHHHHHHHHHHhccChhhCcCHHHHHHHh
Confidence                   11122222222222222111   12357899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.83  E-value=7.5e-21  Score=131.49  Aligned_cols=139  Identities=22%  Similarity=0.167  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC--------------CccccccccccccCCcccccCC-CCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--------------SNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--------------~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l   65 (160)
                      +||+++.++.++|+|||.++....+.              .......++..|++||.+.+.. ++.++|+||+|++++++
T Consensus       148 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el  227 (335)
T PTZ00024        148 ANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAEL  227 (335)
T ss_pred             HHeEECCCCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHH
Confidence            48999999999999999987654211              1111223566899999887643 57889999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHhhhcC--------------------CCCCCCHHHHHHHHHHHHHHHhhhccCCCC
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDVLDQR--------------------LPPPVDQKVIQDILLASTISFACLQSNPKS  125 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~  125 (160)
                      ++|.+||.......    ............                    .+.............+.+++.+||+.+|++
T Consensus       228 ~tg~~p~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~  303 (335)
T PTZ00024        228 LTGKPLFPGENEID----QLGRIFELLGTPNEDNWPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLE  303 (335)
T ss_pred             HhCCCCCCCCCHHH----HHHHHHHHhCCCchhhCcchhhcccccccCcCCcccHHHhCcCCChHHHHHHHHHcCCCchh
Confidence            99999986322110    000000000000                    000000000011234578999999999999


Q ss_pred             CCCHHHHHHHHhhhccCc
Q 040414          126 RPTMQYVSQEFLITRKTP  143 (160)
Q Consensus       126 Rps~~~~~~~~~~~~~~~  143 (160)
                      |||+++++.|+|+.....
T Consensus       304 R~s~~~~l~~~~~~~~~~  321 (335)
T PTZ00024        304 RISAKEALKHEYFKSDPL  321 (335)
T ss_pred             ccCHHHHhcCcccCCCCC
Confidence            999999999999987543

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.83  E-value=3e-20  Score=123.93  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=85.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++......... ....++..|+|||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       129 ~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~--  206 (256)
T cd05114         129 RNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKS--  206 (256)
T ss_pred             ceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCC--
Confidence            58999999999999999887543322111 11224457999999988788889999999999999999 888985221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ........... .....+...   ...+.+++.+||..+|++|||++++++.+
T Consensus       207 -----~~~~~~~i~~~-~~~~~~~~~---~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         207 -----NYEVVEMISRG-FRLYRPKLA---SMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             -----HHHHHHHHHCC-CCCCCCCCC---CHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence                 11112222111 111111111   12357899999999999999999998753

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.83  E-value=2.6e-20  Score=125.48  Aligned_cols=125  Identities=26%  Similarity=0.288  Sum_probs=87.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.+......  .....++..|++||.+.....+.++|+||+|+++|++++ |..||.... 
T Consensus       148 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  226 (277)
T cd05032         148 RNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS-  226 (277)
T ss_pred             heEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC-
Confidence            5899999999999999998765433211  122335668999999988778889999999999999998 888875211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                            ..... .........+.+...   ...+.+++.+||+.+|++|||+.+++..+
T Consensus       227 ------~~~~~-~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~~l~~~l  275 (277)
T cd05032         227 ------NEEVL-KFVIDGGHLDLPENC---PDKLLELMRMCWQYNPKMRPTFLEIVSSL  275 (277)
T ss_pred             ------HHHHH-HHHhcCCCCCCCCCC---CHHHHHHHHHHcCCChhhCCCHHHHHHHh
Confidence                  11111 111121111222222   22357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.83  E-value=2.4e-20  Score=124.58  Aligned_cols=126  Identities=20%  Similarity=0.274  Sum_probs=87.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc---cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT---LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~---~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++..........   ...++..|++||.+....++.++|+||+|+++|++++ |..||....
T Consensus       124 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  203 (257)
T cd05115         124 RNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK  203 (257)
T ss_pred             heEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC
Confidence            589999999999999999876543322111   1123467999999887778889999999999999996 999986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             ... ....+........+....   ..+.+++.+||..+|++||++.++.+.+.
T Consensus       204 -------~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~c~~~~~~~Rp~~~~i~~~l~  253 (257)
T cd05115         204 -------GPE-VMSFIEQGKRLDCPAECP---PEMYALMKDCWIYKWEDRPNFAKVEERMR  253 (257)
T ss_pred             -------HHH-HHHHHHCCCCCCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHh
Confidence                   111 222222222222222222   23467999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.83  E-value=2.1e-20  Score=131.82  Aligned_cols=128  Identities=21%  Similarity=0.312  Sum_probs=89.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       266 ~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~-  344 (400)
T cd05105         266 RNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMI-  344 (400)
T ss_pred             HhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccc-
Confidence            489999999999999999886543222  1122335667999999988888899999999999999997 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ........+......+......   ..+.+++.+||+.||++|||+.++.+.+..
T Consensus       345 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~cl~~dP~~RPt~~~l~~~l~~  396 (400)
T cd05105         345 ------VDSTFYNKIKSGYRMAKPDHAT---QEVYDIMVKCWNSEPEKRPSFLHLSDIVES  396 (400)
T ss_pred             ------hhHHHHHHHhcCCCCCCCccCC---HHHHHHHHHHCccCHhHCcCHHHHHHHHHH
Confidence                  1111222222222222222222   235789999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.83  E-value=2.7e-20  Score=126.72  Aligned_cols=128  Identities=23%  Similarity=0.276  Sum_probs=87.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||++....... .......+..|++||.+....++.++|+||+|+++|+|++ |..||....   
T Consensus       148 ~Nill~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~---  223 (297)
T cd05089         148 RNVLVGENLASKIADFGLSRGEEVYV-KKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT---  223 (297)
T ss_pred             ceEEECCCCeEEECCcCCCcccccee-ccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC---
Confidence            59999999999999999886322111 1111123456999999988888889999999999999997 989985221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ..... .........+.+...   ...+.+++.+||..+|.+||+++++++.+....
T Consensus       224 ----~~~~~-~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~  276 (297)
T cd05089         224 ----CAELY-EKLPQGYRMEKPRNC---DDEVYELMRQCWRDRPYERPPFAQISVQLSRML  276 (297)
T ss_pred             ----HHHHH-HHHhcCCCCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                11111 222222222111111   123578999999999999999999988865443

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.83  E-value=3.5e-20  Score=125.35  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=88.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++........   .....++..|++||.+.....+.++|+||+|++++++++|..|+.....
T Consensus       136 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~  215 (283)
T cd05080         136 RNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPK  215 (283)
T ss_pred             heEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcc
Confidence            5999999999999999998865432211   1112345569999999888888999999999999999999988753211


Q ss_pred             cC-------CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LS-------SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..       ...................+.+....   ..+.+++.+||+.+|++|||++++++.+..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rps~~~i~~~l~~  280 (283)
T cd05080         216 KFEEMIGPKQGQMTVVRLIELLERGMRLPCPKNCP---QEVYILMKNCWETEAKFRPTFRSLIPILKE  280 (283)
T ss_pred             hhhhhhcccccccchhhhhhhhhcCCCCCCCCCCC---HHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence            00       00001111111111222222111111   235789999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.83  E-value=3.8e-20  Score=123.76  Aligned_cols=126  Identities=27%  Similarity=0.420  Sum_probs=88.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+......... .....++..|++||...+...+.++|+||+|+++|++++ |..||....  
T Consensus       131 ~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--  208 (260)
T cd05069         131 ANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV--  208 (260)
T ss_pred             ceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC--
Confidence            5899999999999999998765432211 112234567999999888888889999999999999998 888886221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ... ....+......+.+...   ...+.+++.+||+.||++||+++++.+.+.
T Consensus       209 -----~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  258 (260)
T cd05069         209 -----NRE-VLEQVERGYRMPCPQGC---PESLHELMKLCWKKDPDERPTFEYIQSFLE  258 (260)
T ss_pred             -----HHH-HHHHHHcCCCCCCCccc---CHHHHHHHHHHccCCcccCcCHHHHHHHHh
Confidence                 111 12222222222222211   233578999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.83  E-value=1.8e-20  Score=124.82  Aligned_cols=124  Identities=23%  Similarity=0.245  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+......  ......++..|++||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       132 ~ni~~~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~----  205 (256)
T cd08530         132 ANILLVANDLVKIGDLGISKVLKKN--MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARS----  205 (256)
T ss_pred             ceEEEecCCcEEEeeccchhhhccC--CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----
Confidence            5899999999999999998766543  2223446778999999988878889999999999999999999986222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                         .. ...........++...   .....+.+++.+||+.+|++||++++++.|++
T Consensus       206 ---~~-~~~~~~~~~~~~~~~~---~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~  255 (256)
T cd08530         206 ---MQ-DLRYKVQRGKYPPIPP---IYSQDLQNFIRSMLQVKPKLRPNCDKILASPA  255 (256)
T ss_pred             ---HH-HHHHHHhcCCCCCCch---hhCHHHHHHHHHHcCCCcccCCCHHHHhcCCC
Confidence               11 1112222222222222   22334688999999999999999999999976

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.83  E-value=2.3e-20  Score=124.60  Aligned_cols=125  Identities=22%  Similarity=0.303  Sum_probs=86.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.++.......... ...++..|++||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       129 ~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~--  206 (256)
T cd05113         129 RNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFN--  206 (256)
T ss_pred             ceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCC--
Confidence            589999999999999999876543321111 1224457999999987778889999999999999998 888875221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ........... .........   ...+.+++.+||+.+|++||++.+++..+
T Consensus       207 -----~~~~~~~~~~~-~~~~~~~~~---~~~~~~li~~cl~~~p~~Rp~~~~ll~~~  255 (256)
T cd05113         207 -----NSETVEKVSQG-LRLYRPHLA---SEKVYAIMYSCWHEKAEERPTFQQLLSSI  255 (256)
T ss_pred             -----HHHHHHHHhcC-CCCCCCCCC---CHHHHHHHHHHcCCCcccCCCHHHHHHhh
Confidence                 11111222211 111111111   22357899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.83  E-value=1.3e-20  Score=127.05  Aligned_cols=132  Identities=23%  Similarity=0.261  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+...... .......++..|++||.+.+..++.++|+||+|++++++++|..||....... 
T Consensus       124 ~Nil~~~~~~~~l~dfg~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-  201 (277)
T cd05577         124 ENVLLDDHGNVRISDLGLAVELKGG-KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEKV-  201 (277)
T ss_pred             HHEEECCCCCEEEccCcchhhhccC-CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCcccc-
Confidence            4899999999999999988754332 22223446778999999888778889999999999999999999986322110 


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                         ....+...... .+...+...   ...+.+++.+||+.+|++||     ++++++.|+|+...
T Consensus       202 ---~~~~~~~~~~~-~~~~~~~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~  260 (277)
T cd05577         202 ---EKEELKRRTLE-MAVEYPDKF---SPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDL  260 (277)
T ss_pred             ---cHHHHHhcccc-ccccCCccC---CHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcC
Confidence               01111111111 111111111   22347899999999999999     99999999999763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.83  E-value=2.8e-20  Score=124.10  Aligned_cols=125  Identities=23%  Similarity=0.354  Sum_probs=86.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.++...+...... ...++..|++||.+.+..++.++|+||+|+++|++++ |..||..... 
T Consensus       129 ~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-  207 (256)
T cd05059         129 RNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN-  207 (256)
T ss_pred             hhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH-
Confidence            589999999999999999876543221111 1122346999999988888889999999999999998 7888863211 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                            .. ....+........+...   ...+.+++.+||+.+|++|||++++++.+
T Consensus       208 ------~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         208 ------SE-VVESVSAGYRLYRPKLA---PTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             ------HH-HHHHHHcCCcCCCCCCC---CHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence                  11 11222222111111111   22357899999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.83  E-value=2e-20  Score=126.30  Aligned_cols=131  Identities=19%  Similarity=0.221  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+.......  .....++..|++||.+..+ .++.++|+||+|++++++++|..||.......
T Consensus       126 ~nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~  203 (278)
T cd05606         126 ANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD  203 (278)
T ss_pred             HHEEECCCCCEEEccCcCccccCccC--CcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccc
Confidence            48999999999999999987543322  1234578899999998754 46788999999999999999999986332110


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~~  142 (160)
                           ........ .......+...   ...+.+++.+||..+|.+||     +++++++|+|+....
T Consensus       204 -----~~~~~~~~-~~~~~~~~~~~---s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~~  262 (278)
T cd05606         204 -----KHEIDRMT-LTMAVELPDSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSLD  262 (278)
T ss_pred             -----hHHHHHHh-hccCCCCCCcC---CHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCCC
Confidence                 01111111 11111111111   22357899999999999999     999999999998743

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.83  E-value=9.5e-21  Score=131.40  Aligned_cols=139  Identities=22%  Similarity=0.230  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+......   .....++..|++||.+.+. ..+.++|+||+|++++++++|..||.......
T Consensus       147 ~Nill~~~~~~kL~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~~~~~~  223 (343)
T cd07851         147 SNIAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPGSDHID  223 (343)
T ss_pred             HHeEECCCCCEEEcccccccccccc---ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHH
Confidence            4899999999999999998765432   2224567789999988653 46788999999999999999999985221100


Q ss_pred             C-------CCCchhhHHH---------hhh---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDPKIMLID---------VLD---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...+......         .+.   .................+.+++.+||+.||++|||+++++.|+|+..
T Consensus       224 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~  303 (343)
T cd07851         224 QLKRIMNLVGTPDEELLQKISSESARNYIQSLPQMPKKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAE  303 (343)
T ss_pred             HHHHHHHhcCCCCHHHHhhccchhHHHHHHhccccCCCCHHHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccc
Confidence            0       0000000000         000   00000000000111334678999999999999999999999999986


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      -.
T Consensus       304 ~~  305 (343)
T cd07851         304 YH  305 (343)
T ss_pred             cC
Confidence            43

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.83  E-value=1.4e-20  Score=126.14  Aligned_cols=132  Identities=23%  Similarity=0.403  Sum_probs=91.2

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCC----ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++ .++|+|||.+........    ......++..|++||.+.+..++.++|+||+|++++++++|..||...
T Consensus       132 ~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  211 (268)
T cd06630         132 ANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAE  211 (268)
T ss_pred             HHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            489998775 589999999876543211    112245677899999998777888999999999999999999998522


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ..    ................+..+..   ....+.+++.+||..+|+.|||+.+++.|+|+.
T Consensus       212 ~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         212 KH----SNHLALIFKIASATTAPSIPEH---LSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             CC----cchHHHHHHHhccCCCCCCchh---hCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence            21    1111112222111222222222   223357899999999999999999999999873

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.82  E-value=9.8e-21  Score=126.54  Aligned_cols=126  Identities=22%  Similarity=0.311  Sum_probs=89.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++. +.++|+|||.++.............+++.|++||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       135 ~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~~----  209 (260)
T cd08222         135 KNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQN----  209 (260)
T ss_pred             hheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCcc----
Confidence            4788875 56999999998766544333334557788999999877777888999999999999999999985211    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         ......... ....+..+..   ....+.+++.+||..+|++||+++++++|+|+
T Consensus       210 ---~~~~~~~~~-~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         210 ---FLSVVLRIV-EGPTPSLPET---YSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             ---HHHHHHHHH-cCCCCCCcch---hcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence               111122222 1222222221   12245789999999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.82  E-value=5.7e-20  Score=122.87  Aligned_cols=126  Identities=25%  Similarity=0.427  Sum_probs=87.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+..+....... ....++..|++||.+.+...+.++|+||+|++++++++ |.+||....  
T Consensus       131 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~--  208 (260)
T cd05070         131 ANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN--  208 (260)
T ss_pred             ceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC--
Confidence            58999999999999999987654322111 11234557999999887778889999999999999998 888885221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ... ....+......+.+..   ....+.+++.+||..+|++|||++++...+.
T Consensus       209 -----~~~-~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~  258 (260)
T cd05070         209 -----NRE-VLEQVERGYRMPCPQD---CPISLHELMLQCWKKDPEERPTFEYLQSFLE  258 (260)
T ss_pred             -----HHH-HHHHHHcCCCCCCCCc---CCHHHHHHHHHHcccCcccCcCHHHHHHHHh
Confidence                 111 2222222222222211   1223578999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.82  E-value=2.4e-20  Score=123.86  Aligned_cols=126  Identities=25%  Similarity=0.339  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||...+...+.++|+||+|++++++++|..||....    
T Consensus       122 ~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~----  197 (250)
T cd05123         122 ENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAED----  197 (250)
T ss_pred             ceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCC----
Confidence            5899999999999999998765443223334557778999999887777888999999999999999999985221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH---HHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM---QYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~---~~~~~~~~~  138 (160)
                         ..............  .+...   ...+.+++.+||..||+.||++   ++++.|+||
T Consensus       198 ---~~~~~~~~~~~~~~--~~~~~---~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         198 ---RKEIYEKILKDPLR--FPEFL---SPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             ---HHHHHHHHhcCCCC--CCCCC---CHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence               12222222222222  11111   1224689999999999999999   999999986

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.82  E-value=1.1e-20  Score=130.54  Aligned_cols=140  Identities=21%  Similarity=0.212  Sum_probs=90.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.++|+|||.++.......    ......++..|++||.+.+ ..++.++|+||+|++++++++|.+||...
T Consensus       134 ~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~~pf~~~  213 (332)
T cd07857         134 GNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRKPVFKGK  213 (332)
T ss_pred             HHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCCcCCCCC
Confidence            489999999999999999986543211    1122457888999998765 34678899999999999999999998632


Q ss_pred             cccCC--------CCCchhhHHH-----------hhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           76 SSLSS--------SSDPKIMLID-----------VLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        76 ~~~~~--------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .....        ..........           ....................+.+++.+||+.||++|||+++++.|+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~  293 (332)
T cd07857         214 DYVDQLNQILQVLGTPDEETLSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHP  293 (332)
T ss_pred             CHHHHHHHHHHHhCCCCHHHHHhhhhhhHHHHHHhccccCCcchHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcCh
Confidence            21000        0000000000           0000000000000000123457899999999999999999999999


Q ss_pred             hhhc
Q 040414          137 LITR  140 (160)
Q Consensus       137 ~~~~  140 (160)
                      |+..
T Consensus       294 ~~~~  297 (332)
T cd07857         294 YLAI  297 (332)
T ss_pred             hhhh
Confidence            9975

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.82  E-value=1.2e-20  Score=127.53  Aligned_cols=138  Identities=20%  Similarity=0.190  Sum_probs=88.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||++++++.++|+|||.++.............++..|++||.+.+. .++.++|+||+|++++++++|.+||.......
T Consensus       129 ~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~~~~~~  208 (284)
T cd07836         129 QNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPLFPGTNNED  208 (284)
T ss_pred             HHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcHH
Confidence            48999999999999999987554332222234467789999987654 35778999999999999999999986322100


Q ss_pred             C-------CCCchhhHHHhhh------cCCCCCCCH----HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 S-------SSDPKIMLIDVLD------QRLPPPVDQ----KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~~------~~~~~~~~~----~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      .       ...+.......+.      ...+.....    ........+.+++.+||+.||++||+++++++|+||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         209 QLLKIFRIMGTPTESTWPGISQLPEYKPTFPRYPPQDLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             HHHHHHHHhCCCChhhHHHHhcCchhcccccCCChHHHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            0       0000000000000      000000000    001112346789999999999999999999999986

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.82  E-value=7.5e-20  Score=122.38  Aligned_cols=125  Identities=26%  Similarity=0.389  Sum_probs=87.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++.......... ....+..|++||.+.+..++.++|+||+|++++++++ |..||....  
T Consensus       132 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~--  209 (261)
T cd05068         132 RNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT--  209 (261)
T ss_pred             ceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC--
Confidence            589999999999999999987653221111 1112347999999988888889999999999999998 998886221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ..... ..+......+.....   ...+.+++.+||+.+|++||+++++...+
T Consensus       210 -----~~~~~-~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~P~~Rp~~~~l~~~l  258 (261)
T cd05068         210 -----NAEVL-QQVDQGYRMPCPPGC---PKELYDIMLDCWKEDPDDRPTFETLQWKL  258 (261)
T ss_pred             -----HHHHH-HHHHcCCCCCCCCcC---CHHHHHHHHHHhhcCcccCCCHHHHHHHH
Confidence                 11122 222222222211111   23357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.82  E-value=1.9e-20  Score=127.91  Aligned_cols=133  Identities=21%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---------------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---------------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---------------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l   65 (160)
                      +||+++.++.++|+|||.++.......               ......++..|++||.+.+..++.++|+||+|++++++
T Consensus       130 ~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el  209 (305)
T cd05609         130 DNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEF  209 (305)
T ss_pred             HHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHH
Confidence            489999999999999998863110000               00112456789999998887788999999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC---HHHHHHHHhhhccC
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT---MQYVSQEFLITRKT  142 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps---~~~~~~~~~~~~~~  142 (160)
                      ++|..||...       ................+....  .....+.+++.+||+.||++||+   +.++++|+|+....
T Consensus       210 ~~g~~pf~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~~  280 (305)
T cd05609         210 LVGCVPFFGD-------TPEELFGQVISDDIEWPEGDE--ALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGLD  280 (305)
T ss_pred             HhCCCCCCCC-------CHHHHHHHHHhcccCCCCccc--cCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCCC
Confidence            9999998521       122222222222221111110  11222478999999999999998   79999999986533

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.82  E-value=2.7e-20  Score=127.31  Aligned_cols=129  Identities=23%  Similarity=0.327  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.........  ....++..|++||.+.+..++.++|+||+|+++|+|++ |..||...  
T Consensus       169 ~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~--  246 (307)
T cd05098         169 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--  246 (307)
T ss_pred             HheEEcCCCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC--
Confidence            58999999999999999987554321111  11223457999999988878889999999999999998 78887421  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ........+......+.+....   ..+.+++.+||+.+|++|||+.+++..+...-
T Consensus       247 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~  300 (307)
T cd05098         247 ------PVEELFKLLKEGHRMDKPSNCT---NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  300 (307)
T ss_pred             ------CHHHHHHHHHcCCCCCCCCcCC---HHHHHHHHHHcccChhhCcCHHHHHHHHHHHH
Confidence                  1122222222222222222222   23567999999999999999999999886543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.82  E-value=1.1e-20  Score=130.34  Aligned_cols=145  Identities=23%  Similarity=0.247  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+......   .....++..|++||.+.+ ..++.++|+||+|++++++++|.+||.......
T Consensus       137 ~Nili~~~~~~~l~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~~~~~~  213 (328)
T cd07856         137 SNILINENCDLKICDFGLARIQDPQ---MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPGKDHVN  213 (328)
T ss_pred             HHEeECCCCCEEeCccccccccCCC---cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            4899999999999999998754322   122346778999998765 456888999999999999999999985322100


Q ss_pred             C-------CCCchhh------------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDPKIM------------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...+...            .........+.+...........+.+++.+||+.+|++|||+++++.|+|+..
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~  293 (328)
T cd07856         214 QFSIITDLLGTPPDDVINTICSENTLRFVQSLPKREPVPFSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAP  293 (328)
T ss_pred             HHHHHHHHhCCCCHHHHHhccchhhHHHHhhccccCCCcHHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCcccc
Confidence            0       0000000            00000000111110111111234678999999999999999999999999987


Q ss_pred             cCcccccc
Q 040414          141 KTPLVKHA  148 (160)
Q Consensus       141 ~~~~~~~~  148 (160)
                      .......+
T Consensus       294 ~~~~~~~~  301 (328)
T cd07856         294 YHDPTDEP  301 (328)
T ss_pred             ccCCcccc
Confidence            55544443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.82  E-value=5.3e-20  Score=126.26  Aligned_cols=129  Identities=22%  Similarity=0.306  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.........  ....++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~-  241 (314)
T cd05099         163 RNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP-  241 (314)
T ss_pred             eeEEEcCCCcEEEccccccccccccccccccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC-
Confidence            58999999999999999997654322111  11223456999999988888889999999999999998 788875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .......+........+....   ..+.+++.+||+.+|++|||+.+++..+....
T Consensus       242 -------~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~cl~~~p~~Rps~~~ll~~l~~~~  294 (314)
T cd05099         242 -------VEELFKLLREGHRMDKPSNCT---HELYMLMRECWHAVPTQRPTFKQLVEALDKVL  294 (314)
T ss_pred             -------HHHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence                   111122222221111111111   23467999999999999999999999887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.82  E-value=3.9e-20  Score=125.03  Aligned_cols=137  Identities=23%  Similarity=0.259  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+........ .....++..|++||.+... ..+.++|+||+|++++++++|.+||.......
T Consensus       128 ~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~~~~~~~~  206 (283)
T cd07830         128 ENLLVSGPEVVKIADFGLAREIRSRPP-YTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLFPGSSEID  206 (283)
T ss_pred             hhEEEcCCCCEEEeecccceeccCCCC-cCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCccCCCChHH
Confidence            489999999999999999886543322 2234567789999987543 46788999999999999999999885221100


Q ss_pred             ----------CCC---Cch-hhHHHhhhcCCCCC----CCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 ----------SSS---DPK-IMLIDVLDQRLPPP----VDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ----------~~~---~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                                ...   ... ...........+..    ...........+.+++.+||+.+|++|||+++++.|+|+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         207 QLYKICSVLGTPTKQDWPEGYKLASKLGFRFPQFAPTSLHQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             HHHHHHHhcCCCChhhhhhHhhhhccccccccccccccHHHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence                      000   000 00000000000000    000000112346789999999999999999999999985

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=2.8e-20  Score=123.69  Aligned_cols=127  Identities=26%  Similarity=0.404  Sum_probs=91.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+..............++..|++||.......+.++|+|++|++++++++|..||....    
T Consensus       128 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~----  203 (254)
T cd06627         128 ANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLN----  203 (254)
T ss_pred             HHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCcc----
Confidence            4899999999999999998876544332233457778999999877777888999999999999999999986322    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         .......... ......+...   ...+.+++.+||+.+|++|||+.+++.|+|+
T Consensus       204 ---~~~~~~~~~~-~~~~~~~~~~---~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         204 ---PMAALFRIVQ-DDHPPLPEGI---SPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             ---HHHHHHHHhc-cCCCCCCCCC---CHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence               1111222211 1111121111   2234789999999999999999999999875

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.82  E-value=6.7e-21  Score=128.31  Aligned_cols=132  Identities=22%  Similarity=0.280  Sum_probs=90.0

Q ss_pred             CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC--------
Q 040414            8 NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS--------   79 (160)
Q Consensus         8 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~--------   79 (160)
                      +..++++|||.+......   +...+.|..|.|||++.+...+..+|+||+|||++|+.+|...|++-....        
T Consensus       248 s~~I~vIDFGsAtf~~e~---hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMerI  324 (415)
T KOG0671|consen  248 STAIKVIDFGSATFDHEH---HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMERI  324 (415)
T ss_pred             CcceEEEecCCcceeccC---cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHHh
Confidence            456899999998764432   345778999999999999999999999999999999999998887433111        


Q ss_pred             CCCCchhhHHHh----------h-----------hc--CCCCCC---CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           80 SSSDPKIMLIDV----------L-----------DQ--RLPPPV---DQKVIQDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        80 ~~~~~~~~~~~~----------~-----------~~--~~~~~~---~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                      .+..+...+.+.          +           ..  ..+.+.   ......+...+.+|+++||..||.+|+|+.|++
T Consensus       325 lGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL  404 (415)
T KOG0671|consen  325 LGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREAL  404 (415)
T ss_pred             hCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHh
Confidence            011111111111          0           00  000000   001112233568999999999999999999999


Q ss_pred             HHHhhhccC
Q 040414          134 QEFLITRKT  142 (160)
Q Consensus       134 ~~~~~~~~~  142 (160)
                      .|+||+...
T Consensus       405 ~HpFF~~~~  413 (415)
T KOG0671|consen  405 SHPFFARLT  413 (415)
T ss_pred             cCHHhhcCC
Confidence            999998754

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.82  E-value=3.1e-20  Score=125.27  Aligned_cols=126  Identities=23%  Similarity=0.270  Sum_probs=85.4

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~   74 (160)
                      +||+++.++   .+||+|||.++........  ......+..|++||.+.+..++.++|+||+|+++|++++ |..||..
T Consensus       145 ~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~  224 (277)
T cd05036         145 RNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPG  224 (277)
T ss_pred             heEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCC
Confidence            589998654   5899999998865322111  111223457999999988888999999999999999996 8888862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ..       .. .....+........+...   ...+.+++.+||+.+|++|||+.++++|+.
T Consensus       225 ~~-------~~-~~~~~~~~~~~~~~~~~~---~~~~~~~i~~cl~~~p~~Rps~~~vl~~l~  276 (277)
T cd05036         225 RT-------NQ-EVMEFVTGGGRLDPPKGC---PGPVYRIMTDCWQHTPEDRPNFATILERIQ  276 (277)
T ss_pred             CC-------HH-HHHHHHHcCCcCCCCCCC---CHHHHHHHHHHcCCCcccCcCHHHHHHHhh
Confidence            21       11 122222221111111111   123578999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.82  E-value=2.1e-20  Score=128.12  Aligned_cols=138  Identities=20%  Similarity=0.166  Sum_probs=88.6

Q ss_pred             CceeecC----CCceEEcccccceeccCCCC---ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNS----NLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~----~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +||+++.    ++.+||+|||++........   ......++..|+|||.+.+. .++.++|+||+|++++++++|.+||
T Consensus       137 ~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~  216 (316)
T cd07842         137 ANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIF  216 (316)
T ss_pred             HHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCC
Confidence            4899998    89999999999886543222   11223467789999987664 4678899999999999999999998


Q ss_pred             ccccccCCCCCc--hhhHHHh---hh---------------------cCCCCCCC--H-HH-H----HHHHHHHHHHHhh
Q 040414           73 DLLSSLSSSSDP--KIMLIDV---LD---------------------QRLPPPVD--Q-KV-I----QDILLASTISFAC  118 (160)
Q Consensus        73 ~~~~~~~~~~~~--~~~~~~~---~~---------------------~~~~~~~~--~-~~-~----~~~~~~~~l~~~c  118 (160)
                      ...........+  .......   +.                     ........  . .. .    .....+.+++.+|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  296 (316)
T cd07842         217 KGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLMKDFKTKTYPSNSLAKWMEKHKKPDSQGFDLLRKL  296 (316)
T ss_pred             cCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhhhhccCCCCCCccHHHHHHhccCCCHHHHHHHHHH
Confidence            633221100000  0000000   00                     00000000  0 00 0    1123467899999


Q ss_pred             hccCCCCCCCHHHHHHHHhh
Q 040414          119 LQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus       119 l~~dp~~Rps~~~~~~~~~~  138 (160)
                      |+.||++|||+++++.|+||
T Consensus       297 l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         297 LEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             hcCCcccCcCHHHHhcCCCC
Confidence            99999999999999999986

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.82  E-value=2e-20  Score=126.13  Aligned_cols=126  Identities=23%  Similarity=0.367  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--------------------ccccccccccccCCcccccCCCCCCcCeeehHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--------------------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV   60 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--------------------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~   60 (160)
                      +||+++.++.++|+|||.+........                    ......++..|++||.+.....+.++|+||+|+
T Consensus       131 ~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~  210 (280)
T cd05581         131 ENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGC  210 (280)
T ss_pred             HHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHH
Confidence            489999999999999999876543221                    112234677899999988777888999999999


Q ss_pred             HHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHH
Q 040414           61 VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEF  136 (160)
Q Consensus        61 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~  136 (160)
                      +++++++|..||....       ...............+  ...   ...+.+++.+||+.+|++|||+    ++++.|+
T Consensus       211 ~l~~l~~g~~p~~~~~-------~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~  278 (280)
T cd05581         211 IIYQMLTGKPPFRGSN-------EYLTFQKILKLEYSFP--PNF---PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHP  278 (280)
T ss_pred             HHHHHHhCCCCCCCcc-------HHHHHHHHHhcCCCCC--Ccc---CHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCC
Confidence            9999999999986322       1111222222111111  111   2234789999999999999999    9999999


Q ss_pred             hh
Q 040414          137 LI  138 (160)
Q Consensus       137 ~~  138 (160)
                      |+
T Consensus       279 ~~  280 (280)
T cd05581         279 FF  280 (280)
T ss_pred             CC
Confidence            86

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.82  E-value=9.1e-20  Score=122.11  Aligned_cols=126  Identities=28%  Similarity=0.399  Sum_probs=88.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++.+....... ....++..|++||...+..++.++|+||+|+++|++++ |..||....  
T Consensus       131 ~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~--  208 (262)
T cd05071         131 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--  208 (262)
T ss_pred             ccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--
Confidence            58999999999999999987654332211 12234567999999888888899999999999999999 788875221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ..... .........+....   ....+.+++.+||+.+|++||+++++++.+.
T Consensus       209 -----~~~~~-~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~  258 (262)
T cd05071         209 -----NREVL-DQVERGYRMPCPPE---CPESLHDLMCQCWRKEPEERPTFEYLQAFLE  258 (262)
T ss_pred             -----hHHHH-HHHhcCCCCCCccc---cCHHHHHHHHHHccCCcccCCCHHHHHHHHH
Confidence                 11112 22222222222111   2234578999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.82  E-value=5.5e-20  Score=125.60  Aligned_cols=127  Identities=23%  Similarity=0.257  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++...... .......+..|++||.+.+..++.++|+||+|++++++++ |..||.....  
T Consensus       153 ~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--  229 (303)
T cd05088         153 RNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--  229 (303)
T ss_pred             heEEecCCCcEEeCccccCcccchhh-hcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh--
Confidence            59999999999999999886322111 1111223557999999887778889999999999999998 9999852211  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           . ..............+...   ...+.+++.+||+.+|++||++++++..+...
T Consensus       230 -----~-~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~  280 (303)
T cd05088         230 -----A-ELYEKLPQGYRLEKPLNC---DDEVYDLMRQCWREKPYERPSFAQILVSLNRM  280 (303)
T ss_pred             -----H-HHHHHHhcCCcCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                 1 111122222111111111   12357899999999999999999999987654

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.82  E-value=5.9e-20  Score=122.26  Aligned_cols=125  Identities=22%  Similarity=0.293  Sum_probs=86.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.........  .....+..|++||.+.++.++.++|+||+|+++|++++ |..||.....
T Consensus       123 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~  202 (252)
T cd05084         123 RNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN  202 (252)
T ss_pred             heEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH
Confidence            58999999999999999987543221111  11122346999999988888889999999999999997 8888752211


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                              .............+.+...   ...+.+++.+||+.+|++|||+.++++.+
T Consensus       203 --------~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~~~~~l  250 (252)
T cd05084         203 --------QQTREAIEQGVRLPCPELC---PDAVYRLMERCWEYDPGQRPSFSTVHQEL  250 (252)
T ss_pred             --------HHHHHHHHcCCCCCCcccC---CHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                    1122222222222222222   22357899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=3.8e-20  Score=124.00  Aligned_cols=127  Identities=20%  Similarity=0.274  Sum_probs=89.7

Q ss_pred             CceeecCCCceEEcccccceeccCCC---CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++......   .......++..|++||.+.+...+.++|+||+|++++++++|.+||.... 
T Consensus       135 ~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-  213 (264)
T cd06653         135 ANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYE-  213 (264)
T ss_pred             HHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccC-
Confidence            48999999999999999987643211   11123457788999999988778889999999999999999999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ......+.......+..+....   ..+.+++.+||. +++.|||+.+++.|+|+
T Consensus       214 ------~~~~~~~~~~~~~~~~~p~~~~---~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         214 ------AMAAIFKIATQPTKPMLPDGVS---DACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             ------HHHHHHHHHcCCCCCCCCcccC---HHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence                  1222222222222222222222   235789999999 57999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.82  E-value=6.5e-20  Score=125.24  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=88.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++........  .....++..|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       166 ~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-  244 (304)
T cd05101         166 RNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-  244 (304)
T ss_pred             ceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC-
Confidence            5899999999999999999865432211  112234567999999988878889999999999999998 777764211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             .......+........+...   ...+.+++.+||+.+|++|||+.++++.+..
T Consensus       245 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~cl~~~p~~Rps~~e~l~~l~~  295 (304)
T cd05101         245 -------VEELFKLLKEGHRMDKPANC---TNELYMMMRDCWHAIPSHRPTFKQLVEDLDR  295 (304)
T ss_pred             -------HHHHHHHHHcCCcCCCCCCC---CHHHHHHHHHHcccChhhCCCHHHHHHHHHH
Confidence                   12222222222222222112   2235779999999999999999999998754

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.82  E-value=4.5e-20  Score=130.20  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=89.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......++..|++||.+....++.++|+||+|++++++++ |..||.... 
T Consensus       268 ~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~-  346 (401)
T cd05107         268 RNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP-  346 (401)
T ss_pred             ceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC-
Confidence            589999999999999999876432211  1122345678999999988878889999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ........+........+...   ...+.+++.+||+.+|+.||++++|+..+.
T Consensus       347 ------~~~~~~~~~~~~~~~~~p~~~---~~~l~~li~~cl~~~P~~RPs~~ell~~L~  397 (401)
T cd05107         347 ------MNEQFYNAIKRGYRMAKPAHA---SDEIYEIMQKCWEEKFEIRPDFSQLVHLVG  397 (401)
T ss_pred             ------chHHHHHHHHcCCCCCCCCCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                  112222222222222221111   223578999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=6.2e-20  Score=135.14  Aligned_cols=127  Identities=27%  Similarity=0.392  Sum_probs=92.1

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcc-cccc--ccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNR-TLLA--GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~--~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      |||+..+..+||+|||+++......... ....  -+..|+|||.+....++.++|+||+|+++||+++ |..|+..   
T Consensus       448 NVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~---  524 (609)
T KOG0200|consen  448 NVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPG---  524 (609)
T ss_pred             hEEecCCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCC---
Confidence            8999999999999999999654433322 1111  2346999999999889999999999999999996 7888752   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          ......+.+.+........+..+..+.   -++|..||+.+|++||++.++.+.+-.
T Consensus       525 ----~~~~~~l~~~l~~G~r~~~P~~c~~ei---Y~iM~~CW~~~p~~RP~F~~~~~~~~~  578 (609)
T KOG0200|consen  525 ----IPPTEELLEFLKEGNRMEQPEHCSDEI---YDLMKSCWNADPEDRPTFSECVEFFEK  578 (609)
T ss_pred             ----CCcHHHHHHHHhcCCCCCCCCCCCHHH---HHHHHHHhCCCcccCCCHHHHHHHHHH
Confidence                111222233444444444444454443   368899999999999999999887665

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.82  E-value=8e-20  Score=124.25  Aligned_cols=127  Identities=20%  Similarity=0.277  Sum_probs=85.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh--cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM--GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~--g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||.++.......  ......++..|++||.+.+..++.++|+||+|+++|++++  +..||....
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05051         159 RNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT  238 (296)
T ss_pred             hceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC
Confidence            589999999999999999875433221  1122345668999999888788899999999999999997  566664221


Q ss_pred             ccCCCCCchhhHHHhhh------cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLD------QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             ..........      .....+.+..   ....+.+++.+||+.||++|||+.++++.+.
T Consensus       239 -------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~cl~~~p~~Rpt~~el~~~L~  295 (296)
T cd05051         239 -------DQQVIENAGHFFRDDGRQIYLPRPPN---CPKDIYELMLECWRRDEEDRPTFREIHLFLQ  295 (296)
T ss_pred             -------hHHHHHHHHhccccccccccCCCccC---CCHHHHHHHHHHhccChhcCCCHHHHHHHhc
Confidence                   1111111111      1111111111   1124578999999999999999999987753

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-20  Score=130.94  Aligned_cols=129  Identities=18%  Similarity=0.283  Sum_probs=98.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|.+++.+|-+||.|||.++.++++.. +-+++||+.|.|||++.......++|.||+|+++||+++|.+||...+++..
T Consensus       549 ENllLd~~Gy~KLVDFGFAKki~~g~K-TwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmkt  627 (732)
T KOG0614|consen  549 ENLLLDNRGYLKLVDFGFAKKIGSGRK-TWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKT  627 (732)
T ss_pred             hheeeccCCceEEeehhhHHHhccCCc-eeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHH
Confidence            589999999999999999998776543 4458899999999999998889999999999999999999999984443321


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                          -..+.+.++.   ..++   ........+|+.++...+|..|.-     +.++-.|.||.+
T Consensus       628 ----Yn~ILkGid~---i~~P---r~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~g  682 (732)
T KOG0614|consen  628 ----YNLILKGIDK---IEFP---RRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEG  682 (732)
T ss_pred             ----HHHHHhhhhh---hhcc---cccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhc
Confidence                1122222222   1111   112233467888888899999976     899999999986

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=3.2e-20  Score=118.94  Aligned_cols=129  Identities=21%  Similarity=0.314  Sum_probs=86.5

Q ss_pred             CceeecCCCceEEcccccceeccC----CCCc-----cccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHA----DSSN-----RTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~----~~~~-----~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +|||+++.+.+++.|||.+....-    +...     ......|..|.|||.+.-   ...+.+.||||+||++|.|+.|
T Consensus       158 ~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~  237 (302)
T KOG2345|consen  158 ANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFG  237 (302)
T ss_pred             ceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHc
Confidence            599999999999999999865421    1110     012345678999998753   3467899999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ..||.....-  +..   ....+....+..|-...   ....+.+++..||+.||..||++.+++.+..
T Consensus       238 ~sPfe~~~~~--GgS---laLAv~n~q~s~P~~~~---yse~l~~lik~mlqvdP~qRP~i~~ll~~~d  298 (302)
T KOG2345|consen  238 ESPFERIYQQ--GGS---LALAVQNAQISIPNSSR---YSEALHQLIKSMLQVDPNQRPTIPELLSKLD  298 (302)
T ss_pred             CCcchHHhhc--CCe---EEEeeeccccccCCCCC---ccHHHHHHHHHHhcCCcccCCCHHHHHHHHH
Confidence            9999733321  111   11111111121111111   2334578999999999999999999988764

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.82  E-value=5.5e-20  Score=123.42  Aligned_cols=125  Identities=20%  Similarity=0.309  Sum_probs=86.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++++|||.+......... .....++..|+|||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       136 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~--  213 (266)
T cd05064         136 HKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMS--  213 (266)
T ss_pred             hhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCC--
Confidence            5899999999999999987643222111 112234567999999988888899999999999999775 999986321  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ... ..+.+......+.+...+   ..+.+++.+||+.+|++||+++++++.+
T Consensus       214 -----~~~-~~~~~~~~~~~~~~~~~~---~~~~~li~~c~~~~p~~RP~~~~i~~~l  262 (266)
T cd05064         214 -----GQD-VIKAVEDGFRLPAPRNCP---NLLHQLMLDCWQKERGERPRFSQIHSIL  262 (266)
T ss_pred             -----HHH-HHHHHHCCCCCCCCCCCC---HHHHHHHHHHcCCCchhCCCHHHHHHHH
Confidence                 111 222222222222222222   2357799999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.81  E-value=6.9e-20  Score=127.13  Aligned_cols=129  Identities=23%  Similarity=0.301  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||++.........  .....++..|++||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       208 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-  286 (343)
T cd05103         208 RNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-  286 (343)
T ss_pred             CeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCcc-
Confidence            5899999999999999998765332211  112234567999999988888889999999999999996 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            .................+...   ...+.+++..||+.||++|||+.++++++...
T Consensus       287 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~cl~~~p~~Rps~~eil~~l~~~  339 (343)
T cd05103         287 ------IDEEFCRRLKEGTRMRAPDYT---TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  339 (343)
T ss_pred             ------ccHHHHHHHhccCCCCCCCCC---CHHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                  111122222121111111111   11346788999999999999999999997654

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.81  E-value=6.6e-20  Score=124.42  Aligned_cols=128  Identities=22%  Similarity=0.350  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||++++++.++|+|||.++........  .....++..|++||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       156 ~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-  234 (290)
T cd05045         156 RNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA-  234 (290)
T ss_pred             heEEEcCCCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC-
Confidence            5899999999999999998754332211  111224567999999887778889999999999999998 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                             ..............+.+....   ..+.+++..||+.+|++||++.+++..+...
T Consensus       235 -------~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~cl~~~P~~Rp~~~~i~~~l~~~  286 (290)
T cd05045         235 -------PERLFNLLKTGYRMERPENCS---EEMYNLMLTCWKQEPDKRPTFADISKELEKM  286 (290)
T ss_pred             -------HHHHHHHHhCCCCCCCCCCCC---HHHHHHHHHHccCCcccCCCHHHHHHHHHHH
Confidence                   122222322222222121111   2357899999999999999999999877543

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.81  E-value=6.6e-20  Score=123.80  Aligned_cols=128  Identities=17%  Similarity=0.211  Sum_probs=89.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.+......  .....++..|++||.+.+..++.++|+||+|+++|++++ |..||.....
T Consensus       146 ~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  225 (280)
T cd05043         146 RNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP  225 (280)
T ss_pred             hhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH
Confidence            5899999999999999999865432211  112234567999999988778889999999999999998 9999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                              ......+.............   ..+.+++.+||..||+.|||+.+++..+...
T Consensus       226 --------~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~~~~~l~~~  276 (280)
T cd05043         226 --------FEMAAYLKDGYRLAQPINCP---DELFAVMACCWALDPEERPSFSQLVQCLTDF  276 (280)
T ss_pred             --------HHHHHHHHcCCCCCCCCcCC---HHHHHHHHHHcCCChhhCCCHHHHHHHHHHH
Confidence                    11222222222221111111   2357899999999999999999999877654

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.81  E-value=8.8e-20  Score=122.43  Aligned_cols=126  Identities=27%  Similarity=0.377  Sum_probs=87.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc---cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT---LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~---~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.++++|||.+...........   ....+..|++||.+....++.++|+||+|+++|++++ |..||....
T Consensus       136 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~  215 (268)
T cd05063         136 RNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMS  215 (268)
T ss_pred             hhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCC
Confidence            589999999999999999876543322111   1122446999999988778889999999999999987 999985221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             .. .....+......+.....   ...+.+++.+||+.+|++||++++++..+.
T Consensus       216 -------~~-~~~~~i~~~~~~~~~~~~---~~~~~~li~~c~~~~p~~Rp~~~~i~~~l~  265 (268)
T cd05063         216 -------NH-EVMKAINDGFRLPAPMDC---PSAVYQLMLQCWQQDRARRPRFVDIVNLLD  265 (268)
T ss_pred             -------HH-HHHHHHhcCCCCCCCCCC---CHHHHHHHHHHcCCCcccCcCHHHHHHHHH
Confidence                   11 122222222222221111   223578999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.81  E-value=3.7e-20  Score=128.57  Aligned_cols=138  Identities=22%  Similarity=0.222  Sum_probs=89.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||+++.....   .....++..|++||.+.+ ..++.++|+||+|++++++++|.+||.......
T Consensus       149 ~NIll~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~  225 (345)
T cd07877         149 SNLAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID  225 (345)
T ss_pred             HHEEEcCCCCEEEeccccccccccc---ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            4899999999999999998754322   122456778999998866 356778999999999999999999985221100


Q ss_pred             C--------CCCchhh-----------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S--------SSDPKIM-----------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~--------~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .        .......           .......................+.+++.+||+.||++|||+.++++|+|+..
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~  305 (345)
T cd07877         226 QLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ  305 (345)
T ss_pred             HHHHHHHHhCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhh
Confidence            0        0000000           00000000000000000001223578999999999999999999999999986


Q ss_pred             c
Q 040414          141 K  141 (160)
Q Consensus       141 ~  141 (160)
                      -
T Consensus       306 ~  306 (345)
T cd07877         306 Y  306 (345)
T ss_pred             c
Confidence            3

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.81  E-value=1.1e-19  Score=125.75  Aligned_cols=130  Identities=24%  Similarity=0.317  Sum_probs=91.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.........  ....++..|++||++.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       163 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-  241 (334)
T cd05100         163 RNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP-  241 (334)
T ss_pred             ceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC-
Confidence            58999999999999999987654322111  11223457999999988888889999999999999998 788875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                             .......+......+.+....   ..+.+++.+||+.+|++|||+.+++.++.....
T Consensus       242 -------~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~cl~~~p~~Rps~~ell~~l~~~~~  295 (334)
T cd05100         242 -------VEELFKLLKEGHRMDKPANCT---HELYMIMRECWHAVPSQRPTFKQLVEDLDRVLT  295 (334)
T ss_pred             -------HHHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHcccChhhCcCHHHHHHHHHHHhh
Confidence                   122222222222222221111   235689999999999999999999999876653

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.81  E-value=2e-20  Score=129.80  Aligned_cols=140  Identities=20%  Similarity=0.147  Sum_probs=86.9

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCC---ccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++ .++.++++|||.++.......   ......++..|+|||.+.. ..++.++|+||+|+++|++++|..||...
T Consensus       143 ~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~  222 (342)
T cd07854         143 ANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGA  222 (342)
T ss_pred             HHEEEcCCCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            488997 456789999999876532211   1112346778999998654 34677899999999999999999998532


Q ss_pred             cccCC-------CCCch--------hhHHHhhh-cCCCCCCC--HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           76 SSLSS-------SSDPK--------IMLIDVLD-QRLPPPVD--QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        76 ~~~~~-------~~~~~--------~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      .....       .....        ........ .......+  .........+.+|+.+||..||++|||+++++.|+|
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~  302 (342)
T cd07854         223 HELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEPRRPLRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPY  302 (342)
T ss_pred             CHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcccccCCCHHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCc
Confidence            21000       00000        00000000 00000000  000011234578999999999999999999999999


Q ss_pred             hhc
Q 040414          138 ITR  140 (160)
Q Consensus       138 ~~~  140 (160)
                      +..
T Consensus       303 ~~~  305 (342)
T cd07854         303 MSC  305 (342)
T ss_pred             ccc
Confidence            975

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.81  E-value=1.1e-19  Score=120.73  Aligned_cols=125  Identities=19%  Similarity=0.265  Sum_probs=85.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+.......... .....+..|++||.+.....+.++|+||+|+++|++++ |..||....  
T Consensus       122 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p~~~~~--  199 (250)
T cd05085         122 RNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCPYPGMT--  199 (250)
T ss_pred             heEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCCCCCCC--
Confidence            58999999999999999987543322111 11223557999999988888889999999999999998 888885221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ... .............+...   ...+.+++.+||..+|++||++.+++..+
T Consensus       200 -----~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  248 (250)
T cd05085         200 -----NQQ-AREQVEKGYRMSCPQKC---PDDVYKVMQRCWDYKPENRPKFSELQKEL  248 (250)
T ss_pred             -----HHH-HHHHHHcCCCCCCCCCC---CHHHHHHHHHHcccCcccCCCHHHHHHHh
Confidence                 111 11112222211111111   22357899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.81  E-value=4.4e-20  Score=124.83  Aligned_cols=131  Identities=24%  Similarity=0.247  Sum_probs=88.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+........ ......++..|++||.+.+. .++.++|+||+|++++++++|..||......
T Consensus       129 ~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p~~~~~~~  208 (287)
T cd07840         129 SNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPIFQGSTEL  208 (287)
T ss_pred             HHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            489999999999999999886654321 11223456789999987653 4678899999999999999999998632210


Q ss_pred             CCCCCchhhHHHhhh---------------------cCCCCCCCH---HHHHH--HHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           79 SSSSDPKIMLIDVLD---------------------QRLPPPVDQ---KVIQD--ILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~---~~~~~--~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                             ........                     .........   .....  ...+.+++.+||..+|++||+++++
T Consensus       209 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~  281 (287)
T cd07840         209 -------EQLEKIFELCGSPTDENWPGVSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQA  281 (287)
T ss_pred             -------HHHHHHHHHhCCCchhhccccccchhhhhccccccchhHHHHHhcccCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence                   00000000                     000000000   00001  3356789999999999999999999


Q ss_pred             HHHHhh
Q 040414          133 SQEFLI  138 (160)
Q Consensus       133 ~~~~~~  138 (160)
                      +.|+|+
T Consensus       282 l~~~~~  287 (287)
T cd07840         282 LQHEYF  287 (287)
T ss_pred             hhCcCC
Confidence            999985

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.81  E-value=2.6e-20  Score=136.05  Aligned_cols=143  Identities=16%  Similarity=0.141  Sum_probs=86.0

Q ss_pred             CceeecC-CCceEEcccccceeccCCC-CccccccccccccCCcccccC----------------------CCCCCcCee
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTM----------------------VMTEKCDVY   56 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~----------------------~~~~~~di~   56 (160)
                      +|||++. ++.+||+|||+++.+.... .......+++.|+|||.+...                      .+..++|||
T Consensus       284 ~NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVw  363 (566)
T PLN03225        284 QNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIY  363 (566)
T ss_pred             HHEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccH
Confidence            5999985 5889999999998653322 222345678899999965322                      123456999


Q ss_pred             ehHHHHHHHHhcCCcccccc-----ccCCCCCchhhHHHhhhcCCCCCCCHHH---HHHHHHHHHHHHhhhccCCCCCCC
Q 040414           57 SFGVVTLEVLMGKHPRDLLS-----SLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        57 s~G~~~~~l~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      |+||++|+|+++..+++...     .+..........................   ........+|+.+||+.||.+|||
T Consensus       364 SlGviL~el~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~dLi~~mL~~dP~kR~t  443 (566)
T PLN03225        364 SAGLIFLQMAFPNLRSDSNLIQFNRQLKRNDYDLVAWRKLVEPRASPDLRRGFEVLDLDGGAGWELLKSMMRFKGRQRIS  443 (566)
T ss_pred             HHHHHHHHHHhCcCCCchHHHHHHHHHHhcCCcHHHHHHhhccccchhhhhhhhhccccchHHHHHHHHHccCCcccCCC
Confidence            99999999998765543110     0000000011111111111111000000   000112458999999999999999


Q ss_pred             HHHHHHHHhhhccCc
Q 040414          129 MQYVSQEFLITRKTP  143 (160)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (160)
                      ++++++|+|+.....
T Consensus       444 a~e~L~Hpff~~~~~  458 (566)
T PLN03225        444 AKAALAHPYFDREGL  458 (566)
T ss_pred             HHHHhCCcCcCCCCc
Confidence            999999999987553

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.81  E-value=8.2e-20  Score=124.74  Aligned_cols=129  Identities=24%  Similarity=0.340  Sum_probs=89.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++........  .....++..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       138 ~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~-  216 (303)
T cd05110         138 RNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIP-  216 (303)
T ss_pred             ceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            5899999999999999999865432221  112234567999999988888889999999999999997 888875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .......+......+.....   ...+.+++..||..+|++||++++++..+....
T Consensus       217 -------~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~c~~~~p~~Rp~~~~l~~~l~~~~  269 (303)
T cd05110         217 -------TREIPDLLEKGERLPQPPIC---TIDVYMVMVKCWMIDADSRPKFKELAAEFSRMA  269 (303)
T ss_pred             -------HHHHHHHHHCCCCCCCCCCC---CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                   11122222222211111111   123477899999999999999999999877654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.81  E-value=3.1e-20  Score=122.81  Aligned_cols=142  Identities=21%  Similarity=0.123  Sum_probs=94.5

Q ss_pred             CceeecCC----CceEEcccccceeccCCCCcc---ccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSN----LEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~----~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +|||+..+    |.|||+|+|+++.+.+...+.   ...+-|.+|.|||.+.+.+ ++.+.|+|++||++.|+++.+|.|
T Consensus       161 aNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF  240 (438)
T KOG0666|consen  161 ANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLF  240 (438)
T ss_pred             ceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccc
Confidence            58999877    999999999999877654433   2345688999999998875 788999999999999999998887


Q ss_pred             ccccccC-CC-CC--------------chhhHHHhhhcCC-------------CCCCCH-HHHH----HHHHHHHHHHhh
Q 040414           73 DLLSSLS-SS-SD--------------PKIMLIDVLDQRL-------------PPPVDQ-KVIQ----DILLASTISFAC  118 (160)
Q Consensus        73 ~~~~~~~-~~-~~--------------~~~~~~~~~~~~~-------------~~~~~~-~~~~----~~~~~~~l~~~c  118 (160)
                      .....-. .. ..              +....+..+.+.+             ..+..- ....    .....-+|+.++
T Consensus       241 ~g~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~~~~~~k~k~~~a~~LL~kl  320 (438)
T KOG0666|consen  241 KGREEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHKYYHKHKVKDPSALDLLQKL  320 (438)
T ss_pred             cchhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHHHHHHhcCCCchHHHHHHHH
Confidence            5321110 00 00              1111111111100             000000 0000    011256789999


Q ss_pred             hccCCCCCCCHHHHHHHHhhhccC
Q 040414          119 LQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       119 l~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      |..||.+|.|++++++|.+|....
T Consensus       321 L~yDP~kRIta~qAleh~yF~~d~  344 (438)
T KOG0666|consen  321 LTYDPIKRITAEQALEHPYFTEDP  344 (438)
T ss_pred             hccCchhhccHHHHhcccccccCC
Confidence            999999999999999999999853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.81  E-value=2.7e-20  Score=141.10  Aligned_cols=97  Identities=22%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             ccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHH
Q 040414           32 LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA  111 (160)
Q Consensus        32 ~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (160)
                      ..+|+.|+|||++.+..++.++||||+||++|||+++.+|+.....         ..........++..    .......
T Consensus       175 ~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~  241 (793)
T PLN00181        175 AMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEKSR---------TMSSLRHRVLPPQI----LLNWPKE  241 (793)
T ss_pred             cCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhHHH---------HHHHHHHhhcChhh----hhcCHHH
Confidence            3478889999999888899999999999999999998887642110         11111111111111    1111223


Q ss_pred             HHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414          112 STISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus       112 ~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ..++..||+.+|.+||+++++++|+|+...
T Consensus       242 ~~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        242 ASFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             HHHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            567788999999999999999999999763

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=5.7e-20  Score=123.12  Aligned_cols=135  Identities=20%  Similarity=0.328  Sum_probs=100.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      .|||+|..|++||.|+|.++.-......+.+++|||.|.|||++.+..|+...|.|++|++++||+.|+.||+....-..
T Consensus       380 dnvlldaeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~  459 (593)
T KOG0695|consen  380 DNVLLDAEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNP  459 (593)
T ss_pred             cceEEccCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCc
Confidence            59999999999999999998655556667789999999999999999999999999999999999999999986653332


Q ss_pred             CCCchhhH-HHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC------CHHHHHHHHhhhc
Q 040414           81 SSDPKIML-IDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP------TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp------s~~~~~~~~~~~~  140 (160)
                      .......+ .-.+...+..|-.     .......++...|.+||..|.      -..++..|.||..
T Consensus       460 d~ntedylfqvilekqiriprs-----lsvkas~vlkgflnkdp~erlgc~~~~g~~dik~h~ffr~  521 (593)
T KOG0695|consen  460 DMNTEDYLFQVILEKQIRIPRS-----LSVKASHVLKGFLNKDPKERLGCRPQTGFSDIKSHAFFRS  521 (593)
T ss_pred             ccchhHHHHHHHhhhcccccce-----eehhhHHHHHHhhcCCcHHhcCCCcccchhhhhcchhhhh
Confidence            22222222 2223333332221     111235677788999999994      3678888888874

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.81  E-value=1e-19  Score=121.27  Aligned_cols=125  Identities=22%  Similarity=0.339  Sum_probs=85.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++........ .....++..|++||.+.++.++.++|+||+|+++|++++ |..||....  
T Consensus       129 ~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~--  206 (256)
T cd05112         129 RNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYENRS--  206 (256)
T ss_pred             ceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCCcCC--
Confidence            5899999999999999998765432211 111224567999999988888889999999999999998 889885211  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ... ....+........+...   ...+.+++.+||+.+|++|||++++++.+
T Consensus       207 -----~~~-~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l  255 (256)
T cd05112         207 -----NSE-VVETINAGFRLYKPRLA---SQSVYELMQHCWKERPEDRPSFSLLLHQL  255 (256)
T ss_pred             -----HHH-HHHHHhCCCCCCCCCCC---CHHHHHHHHHHcccChhhCCCHHHHHHhh
Confidence                 111 11111111111101111   12357899999999999999999998865

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.81  E-value=5.3e-20  Score=122.86  Aligned_cols=128  Identities=23%  Similarity=0.236  Sum_probs=91.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+....... ......++..|++||.+.....+.++|+||+|++++++++|..||......  
T Consensus       129 ~nil~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--  205 (258)
T cd05578         129 DNILLDEQGHVHITDFNIATKVTPDT-LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRT--  205 (258)
T ss_pred             HHeEEcCCCCEEEeecccccccCCCc-cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCcc--
Confidence            48999999999999999987654332 222344677899999998877888999999999999999999998633211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH--HHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM--QYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~--~~~~~~~~~  138 (160)
                         ........... .....+...   ...+.+++.+||+.||++||++  +++++|+|+
T Consensus       206 ---~~~~~~~~~~~-~~~~~~~~~---~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         206 ---IRDQIRAKQET-ADVLYPATW---STEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             ---HHHHHHHHhcc-ccccCcccC---cHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence               11111222111 111111111   1345789999999999999999  999999886

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.81  E-value=2.5e-19  Score=120.28  Aligned_cols=125  Identities=21%  Similarity=0.297  Sum_probs=86.1

Q ss_pred             CceeecCCC-----ceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcc
Q 040414            1 NNIILNSNL-----EAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPR   72 (160)
Q Consensus         1 ~nill~~~~-----~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~   72 (160)
                      +||+++.++     .++++|||+++.......  .......+..|++||.+.++.++.++|+||+|+++|++++ |..||
T Consensus       135 ~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~  214 (269)
T cd05044         135 RNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPY  214 (269)
T ss_pred             heEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCC
Confidence            589998877     899999999875532211  1112234567999999988888999999999999999997 99988


Q ss_pred             ccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .....       . .....+............   ...+.+++.+||..+|++||+++++++.+
T Consensus       215 ~~~~~-------~-~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~i~~~l  267 (269)
T cd05044         215 PALNN-------Q-EVLQHVTAGGRLQKPENC---PDKIYQLMTNCWAQDPSERPTFDRIQEIL  267 (269)
T ss_pred             cccCH-------H-HHHHHHhcCCccCCcccc---hHHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            52211       1 111111111111111111   23357899999999999999999998765

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.81  E-value=1.7e-19  Score=120.19  Aligned_cols=124  Identities=24%  Similarity=0.352  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++.......... ...+++.|++||.+....++.++|+||+|++++++++ |.+||...   
T Consensus       132 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~---  208 (258)
T smart00219      132 RNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGM---  208 (258)
T ss_pred             ceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCC---
Confidence            589999999999999999886554322111 1225678999999877778889999999999999998 77887521   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                           ....................   ....+.+++.+||..||++|||+.++++.
T Consensus       209 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~  257 (258)
T smart00219      209 -----SNEEVLEYLKKGYRLPKPEN---CPPEIYKLMLQCWAEDPEDRPTFSELVEI  257 (258)
T ss_pred             -----CHHHHHHHHhcCCCCCCCCc---CCHHHHHHHHHHCcCChhhCcCHHHHHhh
Confidence                 11222222222222222222   12235779999999999999999999864

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.81  E-value=2.2e-19  Score=120.70  Aligned_cols=129  Identities=21%  Similarity=0.286  Sum_probs=89.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc-cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~-~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.++.......... ...++..|++||.+....++.++|+||+|++++++++ |..||....  
T Consensus       136 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~--  213 (270)
T cd05056         136 RNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVK--  213 (270)
T ss_pred             heEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCC--
Confidence            589999999999999999886543322111 1223457999999887778889999999999999886 999986222  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ....... +......+.+....   ..+.+++.+||..+|++|||+.+++..+.-..
T Consensus       214 -----~~~~~~~-~~~~~~~~~~~~~~---~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~  266 (270)
T cd05056         214 -----NNDVIGR-IENGERLPMPPNCP---PTLYSLMTKCWAYDPSKRPRFTELKAQLSDIL  266 (270)
T ss_pred             -----HHHHHHH-HHcCCcCCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                 1111111 11211112222221   23578999999999999999999998876543

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.81  E-value=1.6e-19  Score=120.41  Aligned_cols=123  Identities=20%  Similarity=0.322  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.++.......   ....+..|++||.+....++.++|+||+|++++++++ |..||....   
T Consensus       131 ~Nili~~~~~~~l~d~g~~~~~~~~~~---~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~---  204 (256)
T cd05039         131 RNVLVSEDLVAKVSDFGLAKEASQGQD---SGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---  204 (256)
T ss_pred             ceEEEeCCCCEEEcccccccccccccc---cCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCC---
Confidence            589999999999999999886532221   1223457999999887778889999999999999997 888875221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ................+...   ...+.+++.+||..+|++|||+++++..+.
T Consensus       205 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  254 (256)
T cd05039         205 -----LKDVVPHVEKGYRMEAPEGC---PPEVYKVMKDCWELDPAKRPTFKQLREQLA  254 (256)
T ss_pred             -----HHHHHHHHhcCCCCCCccCC---CHHHHHHHHHHhccChhhCcCHHHHHHHHh
Confidence                 11122222222222111111   223578999999999999999999998764

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.81  E-value=3.2e-19  Score=119.29  Aligned_cols=125  Identities=27%  Similarity=0.435  Sum_probs=87.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+......... .....++..|++||.+....++.++|+||+|++++++++ |..||....  
T Consensus       131 ~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~--  208 (260)
T cd05073         131 ANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMS--  208 (260)
T ss_pred             ceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCC--
Confidence            5899999999999999998765432211 112234567999999988778889999999999999998 899986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                            .......+......+....   ....+.+++.+||+.+|++||++.+++..+
T Consensus       209 ------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L  257 (260)
T cd05073         209 ------NPEVIRALERGYRMPRPEN---CPEELYNIMMRCWKNRPEERPTFEYIQSVL  257 (260)
T ss_pred             ------HHHHHHHHhCCCCCCCccc---CCHHHHHHHHHHcccCcccCcCHHHHHHHH
Confidence                  1111222222222222111   223357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.81  E-value=4.1e-20  Score=126.00  Aligned_cols=134  Identities=23%  Similarity=0.191  Sum_probs=87.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+........ ......++..|++||.+.+. ..+.++|+||+|++++++++|.+||......
T Consensus       145 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~~~  224 (302)
T cd07864         145 SNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQEL  224 (302)
T ss_pred             HHEEECCCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCChH
Confidence            489999999999999999876543321 11222356679999987653 4577899999999999999999998632210


Q ss_pred             CCCCCchhhHHHhhhcCCCC----------------------CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPP----------------------PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .    ....+........+.                      ............+.+++.+||+.||++|||+++++.|+
T Consensus       225 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~  300 (302)
T cd07864         225 A----QLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSP  300 (302)
T ss_pred             H----HHHHHHHHhCCCChhhcccccccccccccccccccccchhhhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCC
Confidence            0    000000000000000                      00000001123457899999999999999999999998


Q ss_pred             hh
Q 040414          137 LI  138 (160)
Q Consensus       137 ~~  138 (160)
                      |+
T Consensus       301 ~~  302 (302)
T cd07864         301 WL  302 (302)
T ss_pred             CC
Confidence            85

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.80  E-value=1.2e-19  Score=121.96  Aligned_cols=125  Identities=23%  Similarity=0.258  Sum_probs=84.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||++....... .......+..|++||.+....++.++|+||+|++++++++ |..||....   
T Consensus       141 ~nili~~~~~~kl~dfgl~~~~~~~~-~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~---  216 (270)
T cd05047         141 RNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT---  216 (270)
T ss_pred             ceEEEcCCCeEEECCCCCccccchhh-hccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC---
Confidence            58999999999999999875322111 1111223456999999887778889999999999999996 899985221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                          ... ....+......+.....   ...+.+++.+||+.+|.+|||+++++..+.
T Consensus       217 ----~~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~il~~l~  266 (270)
T cd05047         217 ----CAE-LYEKLPQGYRLEKPLNC---DDEVYDLMRQCWREKPYERPSFAQILVSLN  266 (270)
T ss_pred             ----HHH-HHHHHhCCCCCCCCCcC---CHHHHHHHHHHcccChhhCCCHHHHHHHHH
Confidence                111 11122221111111111   123578999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.80  E-value=2.1e-19  Score=122.35  Aligned_cols=132  Identities=20%  Similarity=0.258  Sum_probs=84.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh--cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM--GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~--g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||.++.+.....  .......+..|++||....+.++.++|+||+|+++|++++  |..||....
T Consensus       159 ~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~  238 (296)
T cd05095         159 RNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS  238 (296)
T ss_pred             heEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC
Confidence            589999999999999999875533221  1112233567999998887788899999999999999998  667775222


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .......... ...........+.+..+.   ..+.+++..||+.||++||++.++.+.+
T Consensus       239 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rp~~~~i~~~l  294 (296)
T cd05095         239 DEQVIENTGE-FFRDQGRQVYLPKPALCP---DSLYKLMLSCWRRNAKERPSFQEIHATL  294 (296)
T ss_pred             hHHHHHHHHH-HHhhccccccCCCCCCCC---HHHHHHHHHHcCCCcccCCCHHHHHHHH
Confidence            1100000000 000000001111111111   2357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.80  E-value=1.4e-19  Score=124.81  Aligned_cols=136  Identities=16%  Similarity=0.229  Sum_probs=87.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-------cccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +||+++.++.++++||+...........       .....++..|++||.+.+.  .++.++|+||+|++++++++|.+|
T Consensus       130 ~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p  209 (328)
T cd08226         130 SHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVP  209 (328)
T ss_pred             HHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            4899999999999999754322111100       0011234569999998764  367889999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCC----------------------------------------C-CC-CCHHHHHHHH
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRL----------------------------------------P-PP-VDQKVIQDIL  109 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~-~~-~~~~~~~~~~  109 (160)
                      |.....       ............                                        . .. ..........
T Consensus       210 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (328)
T cd08226         210 FQDMLR-------TQMLLQKLKGPPYSPLDITTFPCEESRMKNSQSGVDSGIGESVVAAGMTQTMTSERLRTPSSKTFSP  282 (328)
T ss_pred             CCCcCh-------HHHHHHHhcCCCCCCccccccchhhhhhccchhhhhcccccchhccccccccccccccchhhhhhhH
Confidence            863211       000000000000                                        0 00 0001111233


Q ss_pred             HHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414          110 LASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus       110 ~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      .+.+|+.+||..||++|||++++++|+|+.....
T Consensus       283 ~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~~~~  316 (328)
T cd08226         283 AFQNLVELCLQQDPEKRPSASSLLSHAFFKQVKE  316 (328)
T ss_pred             HHHHHHHHHccCCcccCCCHHHHhhCHHHHHHHH
Confidence            4688999999999999999999999999987543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.80  E-value=1.8e-19  Score=130.06  Aligned_cols=143  Identities=23%  Similarity=0.371  Sum_probs=103.6

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccc---cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRT---LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~---~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      |+|+-..-.|||+|||+.+.++.......   ...-.+.|-+||.+....++.++|+|++||++|||++ |+.||...  
T Consensus       242 NlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~--  319 (1039)
T KOG0199|consen  242 NLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGC--  319 (1039)
T ss_pred             hheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCC--
Confidence            78888888999999999998876544321   1223557999999999999999999999999999996 78887522  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccccccccccc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISI  155 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (160)
                            ....+.+.++.+-..+-+..|.+.+   =+++..||..+|++|||+..+.+.++..+..+...+.....+..
T Consensus       320 ------~g~qIL~~iD~~erLpRPk~csedI---Y~imk~cWah~paDRptFsair~~~~l~eaqp~~a~~~~d~~ep  388 (1039)
T KOG0199|consen  320 ------RGIQILKNIDAGERLPRPKYCSEDI---YQIMKNCWAHNPADRPTFSAIREDLVLAEAQPAVARETYDSIEP  388 (1039)
T ss_pred             ------CHHHHHHhccccccCCCCCCChHHH---HHHHHHhccCCccccccHHHHHHhHHHHhcCCceeeeeccccCC
Confidence                  2334444444443333344444443   46888999999999999999988888777665554444444433

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.80  E-value=1.4e-19  Score=121.58  Aligned_cols=126  Identities=25%  Similarity=0.327  Sum_probs=80.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccC-------CCCCCcCeeehHHHHHHHHh-cCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTM-------VMTEKCDVYSFGVVTLEVLM-GKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~-------~~~~~~di~s~G~~~~~l~~-g~~   70 (160)
                      +||+++.++.++|+|||.++........  .....++..|++||++...       .++.++|+||+|++++++++ |..
T Consensus       129 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~  208 (269)
T cd05087         129 RNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQ  208 (269)
T ss_pred             ceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCC
Confidence            5899999999999999998653322111  1123456779999987542       24678999999999999996 999


Q ss_pred             ccccccccCCCCCchhhHHH-hhh--cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           71 PRDLLSSLSSSSDPKIMLID-VLD--QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ||.....       ...... ...  ...+.+..  .......+.+++.+|| .+|++|||+++|+..+
T Consensus       209 p~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l  267 (269)
T cd05087         209 PYRHLSD-------EQVLTYTVREQQLKLPKPRL--KLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLL  267 (269)
T ss_pred             CCCCCCh-------HHHHHHHhhcccCCCCCCcc--CCCCChHHHHHHHHHh-cCcccCCCHHHHHHHh
Confidence            9863211       111111 111  11111110  1111123467889999 5899999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.80  E-value=1.6e-19  Score=120.73  Aligned_cols=126  Identities=28%  Similarity=0.424  Sum_probs=87.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+......... ......+..|++||.+.+...+.++|+||+|++++++++ |..||...   
T Consensus       132 ~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~---  208 (261)
T cd05034         132 RNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM---  208 (261)
T ss_pred             heEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC---
Confidence            5899999999999999998765432111 111223457999999988878889999999999999998 89998521   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                          ........ +......+.+...   ...+.+++.+||..+|++||+++++...+.
T Consensus       209 ----~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~i~~~l~~~p~~Rp~~~~l~~~l~  259 (261)
T cd05034         209 ----TNREVLEQ-VERGYRMPRPPNC---PEELYDLMLQCWDKDPEERPTFEYLQSFLE  259 (261)
T ss_pred             ----CHHHHHHH-HHcCCCCCCCCCC---CHHHHHHHHHHcccCcccCCCHHHHHHHHh
Confidence                11222222 2222222221111   123578999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.4e-20  Score=129.96  Aligned_cols=131  Identities=22%  Similarity=0.346  Sum_probs=93.6

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccCC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLSS   80 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~~   80 (160)
                      |+|++.++.+||+|||+++.-..-........-+..|+|||++..+.++.++||||+||++||+++ |..||....    
T Consensus       292 NcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g~~Py~g~~----  367 (474)
T KOG0194|consen  292 NCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENGAEPYPGMK----  367 (474)
T ss_pred             HheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeeccCCCCCCCCC----
Confidence            889999999999999998753211111111123458999999999999999999999999999997 788886222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         .............+.+.+...+..   +..++.+||..+|+.||+|.++.+.+....+.
T Consensus       368 ---~~~v~~kI~~~~~r~~~~~~~p~~---~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~  423 (474)
T KOG0194|consen  368 ---NYEVKAKIVKNGYRMPIPSKTPKE---LAKVMKQCWKKDPEDRPTMSTIKKKLEALEKK  423 (474)
T ss_pred             ---HHHHHHHHHhcCccCCCCCCCHHH---HHHHHHHhccCChhhccCHHHHHHHHHHHHhc
Confidence               223333333444444444433333   35677799999999999999999988777644

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.80  E-value=2e-19  Score=121.99  Aligned_cols=127  Identities=24%  Similarity=0.284  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++.........  ....++..|++||.+.++.++.++|+||+|++++++++ |..||...  
T Consensus       148 ~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~--  225 (288)
T cd05061         148 RNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL--  225 (288)
T ss_pred             heEEEcCCCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCC--
Confidence            58999999999999999987543322111  11234567999999988888889999999999999998 77887521  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           .............. ...+...   ...+.+++..||+.||++|||+.++++.+..
T Consensus       226 -----~~~~~~~~~~~~~~-~~~~~~~---~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~  277 (288)
T cd05061         226 -----SNEQVLKFVMDGGY-LDQPDNC---PERVTDLMRMCWQFNPKMRPTFLEIVNLLKD  277 (288)
T ss_pred             -----CHHHHHHHHHcCCC-CCCCCCC---CHHHHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence                 11111111111111 1111111   1245789999999999999999999876544

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.80  E-value=6.8e-20  Score=124.68  Aligned_cols=126  Identities=20%  Similarity=0.270  Sum_probs=83.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh--cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM--GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~--g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||++.........  .....++..|++||.+..+.++.++|+||+|++++++++  +..||....
T Consensus       158 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~  237 (295)
T cd05097         158 RNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS  237 (295)
T ss_pred             hhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC
Confidence            5899999999999999998754322211  112234568999999888888899999999999999988  556664211


Q ss_pred             ccCCCCCchhhHHHh---h---hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           77 SLSSSSDPKIMLIDV---L---DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .       .......   .   ...........   ....+.+++.+||+.||++|||++++++.+
T Consensus       238 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p~~RPs~~~i~~~l  293 (295)
T cd05097         238 D-------EQVIENTGEFFRNQGRQIYLSQTPL---CPSPVFKLMMRCWSRDIKDRPTFNKIHHFL  293 (295)
T ss_pred             h-------HHHHHHHHHhhhhccccccCCCCCC---CCHHHHHHHHHHcCCCchhCcCHHHHHHHH
Confidence            1       1111110   0   00000111111   112357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.80  E-value=3.8e-20  Score=129.56  Aligned_cols=136  Identities=20%  Similarity=0.169  Sum_probs=95.4

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc--
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS--   77 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~--   77 (160)
                      .|||+++ ...+||||||.+-...... . ..+.-+..|.|||++.+.+|....|+||+||++||+.+|+..|.+...  
T Consensus       565 DNiLVNE~k~iLKLCDfGSA~~~~ene-i-tPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~  642 (752)
T KOG0670|consen  565 DNILVNESKNILKLCDFGSASFASENE-I-TPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQ  642 (752)
T ss_pred             cceEeccCcceeeeccCcccccccccc-c-cHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHH
Confidence            4899985 4678999999987654332 1 123345679999999999999999999999999999999877652110  


Q ss_pred             -----------cC-------------------------------------CCCCchhhHHHhhhcCCCCCCCHHHHHHHH
Q 040414           78 -----------LS-------------------------------------SSSDPKIMLIDVLDQRLPPPVDQKVIQDIL  109 (160)
Q Consensus        78 -----------~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (160)
                                 +.                                     ....+...+...+...+  .++...+....
T Consensus       643 MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q--~~~deq~~~~~  720 (752)
T KOG0670|consen  643 MLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQ--RLPDEQPKIVQ  720 (752)
T ss_pred             HHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccC--CCCchhHHHHH
Confidence                       00                                     00011111111111111  12345566677


Q ss_pred             HHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414          110 LASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus       110 ~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .+.+|+.+|+..||++|.|..++|.|+|++.
T Consensus       721 ~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  721 QLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             HHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence            7899999999999999999999999999975

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.80  E-value=6.5e-20  Score=127.24  Aligned_cols=139  Identities=24%  Similarity=0.264  Sum_probs=90.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+.......   ....+++.|++||.+.+ ..++.++|+||+|++++++++|.+||.......
T Consensus       147 ~Nill~~~~~~kl~dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~~~  223 (343)
T cd07880         147 GNLAVNEDCELKILDFGLARQTDSEM---TGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGHDHLD  223 (343)
T ss_pred             HHEEEcCCCCEEEeecccccccccCc---cccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            48999999999999999987643321   22346778999998875 346778999999999999999999986322100


Q ss_pred             C-------CCCchhhHHHhhh--------cCCCCCCCHHH----HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDPKIMLIDVLD--------QRLPPPVDQKV----IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...........+.        ...+.......    ......+.+++.+|++.||++|||+.+++.|+|+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~  303 (343)
T cd07880         224 QLMEIMKVTGTPSKEFVQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEE  303 (343)
T ss_pred             HHHHHHHhcCCCCHHHHHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhh
Confidence            0       0000000000000        00000000000    011223578999999999999999999999999987


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      ..
T Consensus       304 ~~  305 (343)
T cd07880         304 FH  305 (343)
T ss_pred             hc
Confidence            43

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.80  E-value=2.7e-19  Score=120.31  Aligned_cols=126  Identities=21%  Similarity=0.308  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++.......  ......+++.|++||.+....++.++|+||+|+++|++++ |.+||.... 
T Consensus       142 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~-  220 (273)
T cd05074         142 RNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE-  220 (273)
T ss_pred             hhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC-
Confidence            589999999999999999886543221  1112234567999999888878889999999999999998 788875221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ............. ......   ....+.+++.+||+.+|++|||+.+++..+.
T Consensus       221 ------~~~~~~~~~~~~~-~~~~~~---~~~~~~~l~~~~l~~~p~~Rps~~~~~~~l~  270 (273)
T cd05074         221 ------NSEIYNYLIKGNR-LKQPPD---CLEDVYELMCQCWSPEPKCRPSFQHLRDQLE  270 (273)
T ss_pred             ------HHHHHHHHHcCCc-CCCCCC---CCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                  1111111111111 111111   1223578999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.80  E-value=3.5e-19  Score=118.68  Aligned_cols=122  Identities=24%  Similarity=0.344  Sum_probs=85.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.++|+|||.+.......   .....+..|++||.+.+..++.++|+||+|++++++++ |.+||.....  
T Consensus       129 ~nili~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~--  203 (254)
T cd05083         129 RNILVSEDGVAKVSDFGLARVGSMGV---DNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL--  203 (254)
T ss_pred             ceEEEcCCCcEEECCCccceeccccC---CCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH--
Confidence            58999999999999999987543211   11223457999999888888889999999999999997 8888862221  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           . .................   ....+.+++.+||+.+|+.||++++++..+
T Consensus       204 -----~-~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l  251 (254)
T cd05083         204 -----K-EVKECVEKGYRMEPPEG---CPADVYVLMTSCWETEPKKRPSFHKLREKL  251 (254)
T ss_pred             -----H-HHHHHHhCCCCCCCCCc---CCHHHHHHHHHHcCCChhhCcCHHHHHHHH
Confidence                 1 11222222221111111   122357899999999999999999998765

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=3.9e-20  Score=138.60  Aligned_cols=131  Identities=22%  Similarity=0.290  Sum_probs=95.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCccccc-----CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||||..|++||+|||.+-.+..++... ...+|||-|.+||++..     +.|+..+|.||+||++|||+.|..||..
T Consensus       204 DNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa  283 (1317)
T KOG0612|consen  204 DNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA  283 (1317)
T ss_pred             ceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH
Confidence            59999999999999999998776544433 34679999999999863     4578899999999999999999999963


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC---HHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT---MQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps---~~~~~~~~~~~~  140 (160)
                      .+-       -..+.+.+...-...++ .........++||.+.+. +|+.|..   ++++..|+||.+
T Consensus       284 dsl-------veTY~KIm~hk~~l~FP-~~~~VSeeakdLI~~ll~-~~e~RLgrngiedik~HpFF~g  343 (1317)
T KOG0612|consen  284 DSL-------VETYGKIMNHKESLSFP-DETDVSEEAKDLIEALLC-DREVRLGRNGIEDIKNHPFFEG  343 (1317)
T ss_pred             HHH-------HHHHHHHhchhhhcCCC-cccccCHHHHHHHHHHhc-ChhhhcccccHHHHHhCccccC
Confidence            321       22233333332222222 222244556788876655 6888888   999999999987

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.80  E-value=3e-19  Score=121.04  Aligned_cols=126  Identities=21%  Similarity=0.310  Sum_probs=85.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.++.+......  ......+..|++||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       159 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~-  237 (288)
T cd05050         159 RNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA-  237 (288)
T ss_pred             hheEecCCCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            5899999999999999998754332211  111233557999999888888889999999999999997 777764211 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                            ............. .+.+...   ...+.+++.+||+.||++|||+++++..+.
T Consensus       238 ------~~~~~~~~~~~~~-~~~~~~~---~~~l~~li~~~l~~~p~~Rpt~~el~~~l~  287 (288)
T cd05050         238 ------HEEVIYYVRDGNV-LSCPDNC---PLELYNLMRLCWSKLPSDRPSFASINRILQ  287 (288)
T ss_pred             ------HHHHHHHHhcCCC-CCCCCCC---CHHHHHHHHHHcccCcccCCCHHHHHHHhh
Confidence                  1122222211211 1111111   123578999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.79  E-value=5e-19  Score=119.81  Aligned_cols=134  Identities=21%  Similarity=0.267  Sum_probs=86.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccc-c
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLL-S   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~-~   76 (160)
                      +||+++.++.++|+|||+++.......   ......++..|++||.+.+..++.++|+||+|+++++++++..++... .
T Consensus       138 ~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~~~~~  217 (284)
T cd05079         138 RNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSESSPMT  217 (284)
T ss_pred             heEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCccccc
Confidence            599999999999999999886543221   112234566799999988877888999999999999999976553210 0


Q ss_pred             ccC------CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLS------SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ...      ...................+.....   ...+.+++.+||+.+|++|||+++++..+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~~il~~l~  281 (284)
T cd05079         218 LFLKMIGPTHGQMTVTRLVRVLEEGKRLPRPPNC---PEEVYQLMRKCWEFQPSKRTTFQNLIEGFE  281 (284)
T ss_pred             hhhhhcccccccccHHHHHHHHHcCccCCCCCCC---CHHHHHHHHHHccCCcccCcCHHHHHHHHH
Confidence            000      0000111111112111111111111   223578999999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.79  E-value=5.1e-19  Score=119.70  Aligned_cols=134  Identities=21%  Similarity=0.261  Sum_probs=85.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++.........   ....++..|++||.+.+..++.++|+||+|+++++++++..++.....
T Consensus       137 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~  216 (284)
T cd05081         137 RNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPA  216 (284)
T ss_pred             hhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcch
Confidence            58999999999999999988654332211   111233458999999888888899999999999999997665421110


Q ss_pred             c-----CCCCC---chhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 L-----SSSSD---PKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      .     .....   ........+......+......   ..+.+++.+||..+|++|||+++++..+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rpt~~ei~~~l~  281 (284)
T cd05081         217 EFMRMMGNDKQGQMIVYHLIELLKNNGRLPAPPGCP---AEIYAIMKECWNNDPSQRPSFSELALQVE  281 (284)
T ss_pred             hhhhhcccccccccchHHHHHHHhcCCcCCCCCCCC---HHHHHHHHHHccCChhhCCCHHHHHHHHH
Confidence            0     00000   0011111111111111111111   23578999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.79  E-value=6.7e-19  Score=118.25  Aligned_cols=126  Identities=29%  Similarity=0.437  Sum_probs=85.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---ccccc--ccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLA--GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~--~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~   74 (160)
                      +||+++.++.++|+|||+++........   .....  .+..|++||.+.+..++.++|+||+|++++++++ |..||..
T Consensus       135 ~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~  214 (269)
T cd05065         135 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWD  214 (269)
T ss_pred             heEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCC
Confidence            5899999999999999998765432211   01111  1346999999988888889999999999999886 8888752


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ..       .. .....+......+.....+   ..+.+++.+||..+|++||++++++..+.
T Consensus       215 ~~-------~~-~~~~~i~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  266 (269)
T cd05065         215 MS-------NQ-DVINAIEQDYRLPPPMDCP---TALHQLMLDCWQKDRNARPKFGQIVSTLD  266 (269)
T ss_pred             CC-------HH-HHHHHHHcCCcCCCcccCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence            21       11 1112222212111111111   23478999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.79  E-value=8.9e-19  Score=118.28  Aligned_cols=129  Identities=23%  Similarity=0.355  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc--cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT--LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~--~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++..........  ...++..|++||.+....++.++|+||+|++++++++ |..||.... 
T Consensus       138 ~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-  216 (279)
T cd05057         138 RNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP-  216 (279)
T ss_pred             ceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC-
Confidence            589999999999999999986543222111  1123457999999887778889999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            .. .....+......+.+....   ..+.+++.+||..+|..||++.+++..+-...
T Consensus       217 ------~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~Rp~~~~l~~~l~~~~  269 (279)
T cd05057         217 ------AV-EIPDLLEKGERLPQPPICT---IDVYMVLVKCWMIDAESRPTFKELINEFSKMA  269 (279)
T ss_pred             ------HH-HHHHHHhCCCCCCCCCCCC---HHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence                  11 1222222222222221111   23467889999999999999999988876543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.79  E-value=6e-19  Score=118.41  Aligned_cols=126  Identities=26%  Similarity=0.381  Sum_probs=86.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccc---cccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRT---LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~---~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.++|+|||.++.+........   ....+..|++||.+.+..++.++|+||+|++++++++ |..||....
T Consensus       135 ~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~  214 (267)
T cd05066         135 RNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMS  214 (267)
T ss_pred             hcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCC
Confidence            589999999999999999886543322111   1122457999999988888899999999999999886 999985322


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      .       .. ....+......+.....   ...+.+++.+||+.+|++||+++++++.+.
T Consensus       215 ~-------~~-~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~  264 (267)
T cd05066         215 N-------QD-VIKAIEEGYRLPAPMDC---PAALHQLMLDCWQKDRNERPKFEQIVSILD  264 (267)
T ss_pred             H-------HH-HHHHHhCCCcCCCCCCC---CHHHHHHHHHHcccCchhCCCHHHHHHHHH
Confidence            1       11 11111221212211111   123478999999999999999999988754

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.78  E-value=9.5e-19  Score=116.77  Aligned_cols=119  Identities=24%  Similarity=0.313  Sum_probs=82.2

Q ss_pred             CceeecCCC-------ceEEcccccceeccCCCCccccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHh-cCC
Q 040414            1 NNIILNSNL-------EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLM-GKH   70 (160)
Q Consensus         1 ~nill~~~~-------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~-g~~   70 (160)
                      +||+++.++       .+||+|||.+......    ....++..|++||.+...  .++.++|+||+|++++++++ |..
T Consensus       130 ~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~~~~  205 (259)
T cd05037         130 KNILVARYGLNEGYVPFIKLSDPGIPITVLSR----EERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSNGEE  205 (259)
T ss_pred             ceEEEecCccccCCceeEEeCCCCcccccccc----cccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhCCCC
Confidence            589999877       7999999998765431    123355679999998776  57888999999999999998 567


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      |+......     ....... .....+.+..       ..+.+++.+||..+|++|||+.++++.+
T Consensus       206 p~~~~~~~-----~~~~~~~-~~~~~~~~~~-------~~~~~li~~~l~~~p~~Rpt~~~il~~l  258 (259)
T cd05037         206 PLSTLSSS-----EKERFYQ-DQHRLPMPDC-------AELANLINQCWTYDPTKRPSFRAILRDL  258 (259)
T ss_pred             CcccCCch-----hHHHHHh-cCCCCCCCCc-------hHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            76532210     0011111 1111111111       3457899999999999999999998754

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-19  Score=128.89  Aligned_cols=126  Identities=23%  Similarity=0.332  Sum_probs=92.3

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccc-cccccccCCcccccCCCCCCcCeeehHHHHHHHH-hcCCccccccccC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLL-AGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVL-MGKHPRDLLSSLS   79 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~-~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~-~g~~~~~~~~~~~   79 (160)
                      |||+.++-.|||+|||+++.+........+. .-+..|++||.+...+++.++|+|-|||.+||++ .|..||+....  
T Consensus       521 NiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~lGvkPfqgvkN--  598 (974)
T KOG4257|consen  521 NILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSLGVKPFQGVKN--  598 (974)
T ss_pred             heeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHhcCCccccccc--
Confidence            8999999999999999999877654443332 2345799999999999999999999999999998 58899974332  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           ... ...+.+.-..|.++.|+...   =.++.+||.++|.+||.+.++...+--
T Consensus       599 -----sDV-I~~iEnGeRlP~P~nCPp~L---YslmskcWayeP~kRPrftei~~~lsd  648 (974)
T KOG4257|consen  599 -----SDV-IGHIENGERLPCPPNCPPAL---YSLMSKCWAYEPSKRPRFTEIKAILSD  648 (974)
T ss_pred             -----cce-EEEecCCCCCCCCCCCChHH---HHHHHHHhccCcccCCcHHHHHHHHHH
Confidence                 111 11223333333444444433   357889999999999999998776543

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.78  E-value=2.3e-19  Score=133.72  Aligned_cols=131  Identities=20%  Similarity=0.287  Sum_probs=91.3

Q ss_pred             ceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      |++++.....++.+||.++.......  .....+||+.|++||++.+..++.++||||+||++|++++|.+||...    
T Consensus       508 ~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSlG~il~ElltG~~pf~~~----  583 (669)
T cd05610         508 NLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWALGVCLFEFLTGIPPFNDE----  583 (669)
T ss_pred             ceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC----
Confidence            45555555567788888765432211  223457899999999998888899999999999999999999998622    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         .........+....+.+....  .....+.+++..||..||.+||+++++++|+|+...
T Consensus       584 ---~~~~~~~~il~~~~~~p~~~~--~~~~~~~~~l~~lL~~dP~~R~ta~e~l~h~~~~~~  640 (669)
T cd05610         584 ---TPQQVFQNILNRDIPWPEGEE--KLSVNAQNAIEILLTMDPTKRAGLKELKQHPLFHGV  640 (669)
T ss_pred             ---CHHHHHHHHHhcCCCCCcccc--cCCHHHHHHHHHHcccChhHCcCHHHHHhCHhhcCC
Confidence               222233333333332221111  122335678889999999999999999999998763

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.78  E-value=1.4e-18  Score=116.47  Aligned_cols=119  Identities=17%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             CceeecCCCc-------eEEcccccceeccCCCCccccccccccccCCcccc-cCCCCCCcCeeehHHHHHHHH-hcCCc
Q 040414            1 NNIILNSNLE-------AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-TMVMTEKCDVYSFGVVTLEVL-MGKHP   71 (160)
Q Consensus         1 ~nill~~~~~-------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~di~s~G~~~~~l~-~g~~~   71 (160)
                      +|||++.++.       ++++|||.+.......    ...++..|+|||.+. +..++.++|+||+|+++|+++ .|..|
T Consensus       134 ~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~~----~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~~~~~p  209 (262)
T cd05077         134 KNILLAREGIDGECGPFIKLSDPGIPITVLSRQ----ECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICYNGEIP  209 (262)
T ss_pred             ccEEEecCCccCCCCceeEeCCCCCCccccCcc----cccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence            4899986654       8999999887543221    234677899999886 345788899999999999998 57777


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      +.....       . .............. ..    ...+.+++.+||+.||++||++.++++++
T Consensus       210 ~~~~~~-------~-~~~~~~~~~~~~~~-~~----~~~~~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         210 LKDKTL-------A-EKERFYEGQCMLVT-PS----CKELADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             CCCcch-------h-HHHHHHhcCccCCC-CC----hHHHHHHHHHHcCCChhhCcCHHHHHHhc
Confidence            652211       0 11111111111111 11    12357899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.78  E-value=5.4e-19  Score=116.51  Aligned_cols=129  Identities=29%  Similarity=0.338  Sum_probs=90.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+....... ......++..|++||.......+.++|+|++|++++++++|..||...     
T Consensus       116 ~ni~~~~~~~~~l~d~~~~~~~~~~~-~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~-----  189 (244)
T smart00220      116 ENILLDEDGHVKLADFGLARQLDPGG-LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD-----  189 (244)
T ss_pred             HHeEECCCCcEEEccccceeeecccc-ccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----
Confidence            38999999999999999988765432 222345677899999988777888999999999999999999998631     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        ..................... ......+.+++.+||..+|+.||++.++++|+|+
T Consensus       190 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      190 --DQLLELFKKIGKPKPPFPPPE-WKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             --CcHHHHHHHHhccCCCCcccc-ccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence              111222222222221111100 0011235779999999999999999999999885

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.78  E-value=4e-19  Score=119.32  Aligned_cols=128  Identities=23%  Similarity=0.310  Sum_probs=79.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCccccc-------CCCCCCcCeeehHHHHHHHHh-cCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYT-------MVMTEKCDVYSFGVVTLEVLM-GKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~-------~~~~~~~di~s~G~~~~~l~~-g~~   70 (160)
                      +||+++.++.+||+|||+++.......  ......++..|++||++..       ...+.++|+||+|+++|++++ |..
T Consensus       129 ~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~  208 (269)
T cd05042         129 RNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQ  208 (269)
T ss_pred             hheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCC
Confidence            589999999999999999864322211  1112234567999998743       235678999999999999998 777


Q ss_pred             ccccccccCCCCCchhhHHHhhhc-CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQ-RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ||....       ........... ....+.+...........+++..|| .||++|||+++|++.+
T Consensus       209 p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l  267 (269)
T cd05042         209 PYPDLS-------DEQVLKQVVREQDIKLPKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELL  267 (269)
T ss_pred             CCCcCC-------HHHHHHHHhhccCccCCCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHh
Confidence            875221       11112221111 1111111111112223456778888 4999999999998764

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.78  E-value=7.5e-19  Score=118.71  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=89.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||.+.........   .....++..|++||.+.....+.++|+||+|++++++++|..|+.....
T Consensus       138 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~  217 (284)
T cd05038         138 RNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPA  217 (284)
T ss_pred             HhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccc
Confidence            4899999999999999998866532211   1112234569999998888888899999999999999999988753211


Q ss_pred             cCC-------CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSS-------SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...       ...........+......+.+..+.   ..+.+++.+||+.+|+.|||+.++++.+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~  282 (284)
T cd05038         218 EFLRMIGIAQGQMIVTRLLELLKEGERLPRPPSCP---DEVYDLMKLCWEAEPQDRPSFADLILIVDR  282 (284)
T ss_pred             hhccccccccccccHHHHHHHHHcCCcCCCCccCC---HHHHHHHHHHhccChhhCCCHHHHHHHHhh
Confidence            100       0011112222222222222222221   235789999999999999999999987653

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.78  E-value=1e-18  Score=117.44  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=79.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccC-------CCCCCcCeeehHHHHHHHHh-cCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTM-------VMTEKCDVYSFGVVTLEVLM-GKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~-------~~~~~~di~s~G~~~~~l~~-g~~   70 (160)
                      +||+++.++.++|+|||++........  ......++..|++||++...       ..+.++|+||+|+++|++++ +..
T Consensus       128 ~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~  207 (268)
T cd05086         128 RNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQ  207 (268)
T ss_pred             ceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCC
Confidence            589999999999999998764322111  11223467789999987432       24568999999999999996 466


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCC---C-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRL---P-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ||....       .............   . +.....   ....+.+++.+|| .+|++||+++++++.+
T Consensus       208 p~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l  266 (268)
T cd05086         208 PYSHLS-------DREVLNHVIKDQQVKLFKPQLELP---YSERWYEVLQFCW-LSPEKRATAEEVHRLL  266 (268)
T ss_pred             CCCCCC-------HHHHHHHHHhhcccccCCCccCCC---CcHHHHHHHHHHh-hCcccCCCHHHHHHHh
Confidence            764211       1222222221111   1 111111   1123467888999 5799999999998765

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.77  E-value=1.3e-19  Score=119.91  Aligned_cols=138  Identities=25%  Similarity=0.278  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||++..+..+||.|||+++.-... -....++.+..|.|||++.+..+...+||||+||++.||++|...|.+....+.
T Consensus       147 snivv~~~~~lKi~dfg~ar~e~~~-~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~~~Vlf~g~d~idQ  225 (369)
T KOG0665|consen  147 SNIVVNSDCTLKILDFGLARTEDTD-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELILGTVLFPGKDHIDQ  225 (369)
T ss_pred             ccceecchhheeeccchhhcccCcc-cccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhhceEEecCchHHHH
Confidence            6999999999999999999853222 233446778899999999988899999999999999999999888763322221


Q ss_pred             -------CCCchhhHHHhh--------h-----------cCCCC----CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 -------SSDPKIMLIDVL--------D-----------QRLPP----PVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 -------~~~~~~~~~~~~--------~-----------~~~~~----~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                             ...+.......+        .           ...+.    ..........-.+.+++.+||..||++|.|++
T Consensus       226 ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~  305 (369)
T KOG0665|consen  226 WNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVD  305 (369)
T ss_pred             HHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHHHHhhccChhhcccHH
Confidence                   111111110000        0           00000    00011111222457899999999999999999


Q ss_pred             HHHHHHhhh
Q 040414          131 YVSQEFLIT  139 (160)
Q Consensus       131 ~~~~~~~~~  139 (160)
                      ++|+|++++
T Consensus       306 daL~HPY~~  314 (369)
T KOG0665|consen  306 DALRHPYIK  314 (369)
T ss_pred             HHhcCCeee
Confidence            999999997

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.77  E-value=6.9e-19  Score=119.40  Aligned_cols=134  Identities=25%  Similarity=0.356  Sum_probs=91.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC-CccccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++...... .......++..|++||.+...  ..+.++|+||+|++++++++|..||.....
T Consensus       134 ~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~  213 (290)
T cd05613         134 ENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGE  213 (290)
T ss_pred             HHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCc
Confidence            48999999999999999987653322 112234577889999998753  356789999999999999999999863211


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~~  142 (160)
                         ................+.  +..   ....+.+++.+||+.||+.|+     ++++++.|+|+....
T Consensus       214 ---~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  275 (290)
T cd05613         214 ---KNSQAEISRRILKSEPPY--PQE---MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKIN  275 (290)
T ss_pred             ---cccHHHHHHHhhccCCCC--Ccc---CCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccCC
Confidence               111111112222121111  111   112347899999999999997     899999999998754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.77  E-value=1.5e-19  Score=128.02  Aligned_cols=131  Identities=23%  Similarity=0.273  Sum_probs=101.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||||+.+.++||+|||++..+. ......+.+|++.|.|||++.+..+ ++.+|+||+|+++|.++.|..||+.     
T Consensus       184 eNilL~~~mnikIaDfgfS~~~~-~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG-----  257 (596)
T KOG0586|consen  184 ENILLDENMNIKIADFGFSTFFD-YGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDG-----  257 (596)
T ss_pred             hhcccccccceeeeccccceeec-ccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCC-----
Confidence            59999999999999999998765 3344556789999999999998876 6789999999999999999999972     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                        ......-.+++...+..++.-.     ..+.+++.++|..+|.+|++++++..|.|.......
T Consensus       258 --~~lk~Lr~rvl~gk~rIp~~ms-----~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  258 --QNLKELRPRVLRGKYRIPFYMS-----CDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             --cccccccchheeeeecccceee-----chhHHHHHHhhccCccccCCHHHhhhhcccchhhhh
Confidence              2223333344444444333211     123678889999999999999999999999876544

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.77  E-value=7.5e-19  Score=119.14  Aligned_cols=133  Identities=23%  Similarity=0.335  Sum_probs=89.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++|+|||+++........ .....++..|++||.+.+..  .+.++|+||+|++++++++|..||.....
T Consensus       134 ~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~  213 (288)
T cd05583         134 ENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGE  213 (288)
T ss_pred             HHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcc
Confidence            4899999999999999998764433221 12244678899999987654  56789999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC---HHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT---MQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps---~~~~~~~~~~~~~  141 (160)
                      .   ...............+  .+....   ..+.+++.+||+.||++|||   +.++++|+|+...
T Consensus       214 ~---~~~~~~~~~~~~~~~~--~~~~~~---~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         214 Q---NSQSEISRRILKSKPP--FPKTMS---AEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             c---chHHHHHHHHHccCCC--CCcccC---HHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence            1   1111111122222111  111111   23478999999999999998   5677999998764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.77  E-value=5.9e-19  Score=132.96  Aligned_cols=126  Identities=25%  Similarity=0.333  Sum_probs=83.5

Q ss_pred             CceeecCCCceEEcccccceeccCCC------------------CccccccccccccCCcccccCCCCCCcCeeehHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS------------------SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVT   62 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~------------------~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~   62 (160)
                      +||+++.++.++|+|||+++......                  .......||+.|+|||.+.+..++.++|+||+||++
T Consensus       142 eNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVIL  221 (932)
T PRK13184        142 DNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVIL  221 (932)
T ss_pred             heEEEcCCCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHH
Confidence            59999999999999999998652110                  011224689999999999888888999999999999


Q ss_pred             HHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-HHHHHH
Q 040414           63 LEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-QYVSQE  135 (160)
Q Consensus        63 ~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-~~~~~~  135 (160)
                      ++|++|..||.......      .........  +... .........+.+++.+||+.||++|++. +++.+.
T Consensus       222 yELLTG~~PF~~~~~~k------i~~~~~i~~--P~~~-~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~  286 (932)
T PRK13184        222 YQMLTLSFPYRRKKGRK------ISYRDVILS--PIEV-APYREIPPFLSQIAMKALAVDPAERYSSVQELKQD  286 (932)
T ss_pred             HHHHHCCCCCCCcchhh------hhhhhhccC--hhhc-cccccCCHHHHHHHHHHccCChhhCcCHHHHHHHH
Confidence            99999999986321100      000111100  0000 0001112235678999999999999764 444443

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.77  E-value=3.1e-19  Score=117.96  Aligned_cols=119  Identities=24%  Similarity=0.214  Sum_probs=84.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++++|||.+.......   ....++..|++||.+....++.++|+||+|++++++++|..++....... 
T Consensus       114 ~Nil~~~~~~~~l~df~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~-  189 (237)
T cd05576         114 NNILLDDRGHIQLTYFSRWSEVEDSC---DGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGI-  189 (237)
T ss_pred             HHEEEcCCCCEEEecccchhcccccc---ccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhc-
Confidence            48999999999999999876543321   12334567999999887778889999999999999999998865221100 


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-----HHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-----QYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-----~~~~~~~~~  138 (160)
                              ........+...       ...+.+++.+||+.||++|+++     ++++.|+|+
T Consensus       190 --------~~~~~~~~~~~~-------~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         190 --------NTHTTLNIPEWV-------SEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             --------ccccccCCcccC-------CHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence                    000000111111       1234789999999999999996     999999885

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.77  E-value=1.8e-18  Score=115.54  Aligned_cols=119  Identities=18%  Similarity=0.338  Sum_probs=79.8

Q ss_pred             CceeecCCCc--------eEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcC-C
Q 040414            1 NNIILNSNLE--------AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGK-H   70 (160)
Q Consensus         1 ~nill~~~~~--------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~-~   70 (160)
                      +||+++.++.        ++++|||.+......    ....++..|++||.+.+. .++.++|+||+|+++|++++|. +
T Consensus       129 ~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~~  204 (258)
T cd05078         129 KNVLLIREEDRKTGNPPFIKLSDPGISITVLPK----EILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGGDK  204 (258)
T ss_pred             ceEEEecccccccCCCceEEecccccccccCCc----hhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCCCC
Confidence            5899977654        589999987654321    224467789999998764 4678899999999999999984 5


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      |+.....       ... ..........+.  ...   ..+.+++.+||+.||++|||++++++.+
T Consensus       205 ~~~~~~~-------~~~-~~~~~~~~~~~~--~~~---~~~~~li~~~l~~~p~~Rps~~~il~~l  257 (258)
T cd05078         205 PLSALDS-------QKK-LQFYEDRHQLPA--PKW---TELANLINQCMDYEPDFRPSFRAIIRDL  257 (258)
T ss_pred             ChhhccH-------HHH-HHHHHccccCCC--CCc---HHHHHHHHHHhccChhhCCCHHHHHHhc
Confidence            6542211       111 111111111111  111   2247899999999999999999998763

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.77  E-value=6.5e-19  Score=132.96  Aligned_cols=129  Identities=27%  Similarity=0.364  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceecc------------------CCCCccccccccccccCCcccccCC---CCCCcCeeehH
Q 040414            1 NNIILNSNLEAFVADFGTARLLH------------------ADSSNRTLLAGTYGYIAPELAYTMV---MTEKCDVYSFG   59 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~------------------~~~~~~~~~~~~~~~~~Pe~~~~~~---~~~~~di~s~G   59 (160)
                      .||+++++..|||+|||++....                  .+....+..+||..|+|||++.+..   |+.+.||||+|
T Consensus       726 ~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLG  805 (1351)
T KOG1035|consen  726 RNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLG  805 (1351)
T ss_pred             ceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHH
Confidence            39999999999999999997621                  0011223467999999999987654   88899999999


Q ss_pred             HHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           60 VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        60 ~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      +|++||+.-   |.+      .......+...-.+.+|.+ .............+++.+++.||.+||||.++|.+-++-
T Consensus       806 IVlFEM~yP---F~T------sMERa~iL~~LR~g~iP~~-~~f~~~~~~~e~slI~~Ll~hdP~kRPtA~eLL~s~llp  875 (1351)
T KOG1035|consen  806 IVLFEMLYP---FGT------SMERASILTNLRKGSIPEP-ADFFDPEHPEEASLIRWLLSHDPSKRPTATELLNSELLP  875 (1351)
T ss_pred             HHHHHHhcc---CCc------hHHHHHHHHhcccCCCCCC-cccccccchHHHHHHHHHhcCCCccCCCHHHHhhccCCC
Confidence            999999743   431      1112223333334445544 111111222236789999999999999999999987765

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.77  E-value=2e-18  Score=116.24  Aligned_cols=127  Identities=24%  Similarity=0.272  Sum_probs=86.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++++|||.++....... ......++..|++||.+.+...+.++|+||+|++++++++ |..||....  
T Consensus       146 ~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~--  223 (275)
T cd05046         146 RNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS--  223 (275)
T ss_pred             ceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc--
Confidence            589999999999999998864332211 1122345667999999887777888999999999999998 777875221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ...............+......   ..+.+++.+||+.+|++|||+.+++..+.
T Consensus       224 -----~~~~~~~~~~~~~~~~~~~~~~---~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         224 -----DEEVLNRLQAGKLELPVPEGCP---SRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             -----hHHHHHHHHcCCcCCCCCCCCC---HHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence                 1112222221222111111111   23578999999999999999999988763

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.75  E-value=1e-19  Score=132.73  Aligned_cols=129  Identities=26%  Similarity=0.291  Sum_probs=90.1

Q ss_pred             CceeecC---C--CceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc-CCc
Q 040414            1 NNIILNS---N--LEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG-KHP   71 (160)
Q Consensus         1 ~nill~~---~--~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g-~~~   71 (160)
                      .||||+.   +  ..++|+|||+++.+..+....   ....||-+|.|||.+....-..++||+|+||++|++++| .+|
T Consensus       635 QNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~Hp  714 (903)
T KOG1027|consen  635 QNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHP  714 (903)
T ss_pred             ceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccC
Confidence            3899976   3  468999999999876554433   335688899999999988778899999999999999976 888


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      |.....     +...    .+........-....+.  .+.+||.+|++.+|..|||+.+|+.||+|=.
T Consensus       715 FGd~~~-----R~~N----Il~~~~~L~~L~~~~d~--eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~  772 (903)
T KOG1027|consen  715 FGDSLE-----RQAN----ILTGNYTLVHLEPLPDC--EAKDLISRMLNPDPQLRPSATDVLNHPLFWD  772 (903)
T ss_pred             CCchHH-----hhhh----hhcCccceeeeccCchH--HHHHHHHHhcCCCcccCCCHHHHhCCCccCC
Confidence            852111     0000    11111110000000000  4589999999999999999999999988754

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.74  E-value=2e-18  Score=106.50  Aligned_cols=139  Identities=20%  Similarity=0.190  Sum_probs=95.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      .|+|++.+|.+|+.|||+++.++-........+-|.+|.+|.++.+.+ +++..|+||.||++.|+.. |.+.|......
T Consensus       130 qnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrplfpg~dvd  209 (292)
T KOG0662|consen  130 QNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVD  209 (292)
T ss_pred             ceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCCCCCCCcHH
Confidence            389999999999999999998776655555566788999999998876 6888999999999999995 66666422110


Q ss_pred             C-------------CCCCchhhHHHhhhcCC----CCCCC--HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 S-------------SSSDPKIMLIDVLDQRL----PPPVD--QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~-------------~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      .             ...++...  +.-+...    +....  .-.+.......+++++.+.-+|..|.+++..++|++|.
T Consensus       210 dqlkrif~~lg~p~ed~wps~t--~lpdyk~yp~ypattswsqivp~lns~grdllqkll~cnp~qrisaeaalqhpyf~  287 (292)
T KOG0662|consen  210 DQLKRIFRLLGTPTEDQWPSMT--KLPDYKPYPIYPATTSWSQIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFS  287 (292)
T ss_pred             HHHHHHHHHhCCCccccCCccc--cCCCCcccCCccccchHHHHhhhhcchhHHHHHHHhccCcccccCHHHHhcCcccc
Confidence            0             00111100  0101111    11111  11122223467899999999999999999999999987


Q ss_pred             cc
Q 040414          140 RK  141 (160)
Q Consensus       140 ~~  141 (160)
                      ..
T Consensus       288 d~  289 (292)
T KOG0662|consen  288 DF  289 (292)
T ss_pred             cc
Confidence            53

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.74  E-value=1.9e-19  Score=126.64  Aligned_cols=131  Identities=22%  Similarity=0.255  Sum_probs=98.2

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||+.+..   .+||||||.++.++.+. -..+.+||+.|+|||++....|...-||||+|+++|--++|..||++...
T Consensus       693 ENVLLas~~~FPQvKlCDFGfARiIgEks-FRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEd  771 (888)
T KOG4236|consen  693 ENVLLASASPFPQVKLCDFGFARIIGEKS-FRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDED  771 (888)
T ss_pred             hheeeccCCCCCceeeccccceeecchhh-hhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccc
Confidence            588987543   48999999999887543 33457899999999999999999999999999999999999999974433


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..      .++... .-.+|+ -++  .+......+||..+|+..=.+|.|.++.+.|+|...-.
T Consensus       772 In------dQIQNA-aFMyPp-~PW--~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~yq  826 (888)
T KOG4236|consen  772 IN------DQIQNA-AFMYPP-NPW--SEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDYQ  826 (888)
T ss_pred             hh------HHhhcc-ccccCC-Cch--hhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcch
Confidence            21      111111 111222 222  22334468999999999999999999999999998643

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.74  E-value=5.4e-18  Score=115.41  Aligned_cols=125  Identities=18%  Similarity=0.248  Sum_probs=93.0

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      |.+||+...+||+|=.+++-+.......  .....+..||++|.+....++.++|+||||+++||+++ |+.|+.+.++ 
T Consensus       426 NCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmtlg~~PyaeIDP-  504 (563)
T KOG1024|consen  426 NCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMTLGKLPYAEIDP-  504 (563)
T ss_pred             cceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHhcCCCCccccCH-
Confidence            7899999999999999988665433221  12334557999999999999999999999999999996 8888763332 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                             ......++.......+..|+++.   -.+|.-||..+|++||+.+|+...+-
T Consensus       505 -------fEm~~ylkdGyRlaQP~NCPDeL---f~vMacCWallpeeRPsf~Qlv~cLs  553 (563)
T KOG1024|consen  505 -------FEMEHYLKDGYRLAQPFNCPDEL---FTVMACCWALLPEERPSFSQLVICLS  553 (563)
T ss_pred             -------HHHHHHHhccceecCCCCCcHHH---HHHHHHHHhcCcccCCCHHHHHHHHH
Confidence                   22334444444444555666664   35677899999999999999987653

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.74  E-value=1.3e-17  Score=112.44  Aligned_cols=117  Identities=23%  Similarity=0.303  Sum_probs=79.3

Q ss_pred             CceeecCCC-------ceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHH-hcCCc
Q 040414            1 NNIILNSNL-------EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVL-MGKHP   71 (160)
Q Consensus         1 ~nill~~~~-------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~-~g~~~   71 (160)
                      +||+++..+       .+|++|||.+.......    ...++..|++||.+.. ..++.++|+||+|+++|+++ .|..|
T Consensus       146 ~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~~g~~p  221 (274)
T cd05076         146 KNILLARLGLAEGTSPFIKLSDPGVSFTALSRE----ERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICFDGEVP  221 (274)
T ss_pred             ccEEEeccCcccCccceeeecCCcccccccccc----ccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            589997543       37999999876432221    1345677999998865 44678899999999999985 68888


Q ss_pred             cccccccCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      |.....       .. .......  ..+.+..       ..+.+++.+||+.+|++|||++++++++
T Consensus       222 ~~~~~~-------~~-~~~~~~~~~~~~~~~~-------~~~~~li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         222 LKERTP-------SE-KERFYEKKHRLPEPSC-------KELATLISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             ccccCh-------HH-HHHHHHhccCCCCCCC-------hHHHHHHHHHcccChhhCcCHHHHHHhh
Confidence            752211       11 1111111  1222111       1247899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.73  E-value=2.5e-17  Score=127.60  Aligned_cols=136  Identities=26%  Similarity=0.382  Sum_probs=88.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+++. ++........    ....+++.|+|||++.+..++.++||||+||++||+++|+.||+.......
T Consensus       812 ~Nil~~~~~~~~~~-~~~~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~~~~~~  886 (968)
T PLN00113        812 EKIIIDGKDEPHLR-LSLPGLLCTD----TKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAEFGVHG  886 (968)
T ss_pred             HhEEECCCCceEEE-eccccccccC----CCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcccCCCC
Confidence            48999988887775 5554332211    123567899999999988899999999999999999999999853211100


Q ss_pred             CCC-------chhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSD-------PKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ...       .........++....... ........+.+++.+||+.||++||||+++++.+....+.
T Consensus       887 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~L~~~~~~  954 (968)
T PLN00113        887 SIVEWARYCYSDCHLDMWIDPSIRGDVS-VNQNEIVEVMNLALHCTATDPTARPCANDVLKTLESASRS  954 (968)
T ss_pred             cHHHHHHHhcCccchhheeCccccCCCC-ccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHHHHHhhcc
Confidence            000       000011111122211111 1122334467889999999999999999999998776553

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=1.4e-17  Score=115.82  Aligned_cols=129  Identities=19%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhh
Q 040414            8 NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIM   87 (160)
Q Consensus         8 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~   87 (160)
                      +..|||.|||-+-....   ....-++|..|.+||++.+..|++.+||||++|+++|++||...|...+... ..+....
T Consensus       390 di~vKIaDlGNACW~~k---hFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~-Y~rDEDH  465 (590)
T KOG1290|consen  390 DIRVKIADLGNACWVHK---HFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGEN-YSRDEDH  465 (590)
T ss_pred             ceeEEEeeccchhhhhh---hhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCC-CCccHHH
Confidence            45689999998765432   2334568899999999999999999999999999999999998885322111 1111111


Q ss_pred             H---HHhhhc-----------------------CCCCCCCHH-----------HHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           88 L---IDVLDQ-----------------------RLPPPVDQK-----------VIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        88 ~---~~~~~~-----------------------~~~~~~~~~-----------~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      +   .+++..                       .+..-.++.           ...+...+.+|+.-||+.+|++||||.
T Consensus       466 iA~i~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~  545 (590)
T KOG1290|consen  466 IALIMELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAA  545 (590)
T ss_pred             HHHHHHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHH
Confidence            1   111100                       000000000           011233578899999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       546 ~cl~hPwLn~  555 (590)
T KOG1290|consen  546 QCLKHPWLNP  555 (590)
T ss_pred             HHhcCccccC
Confidence            9999999985

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.71  E-value=7e-18  Score=119.71  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=88.7

Q ss_pred             ceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh--cCCccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM--GKHPRDLLSS   77 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~--g~~~~~~~~~   77 (160)
                      |+|++.++++||+|||.++-+-.....  .+..+-+..|+|+|.+.-+++++++|+|++|+++||+++  .+.||.....
T Consensus       667 NcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt~  746 (807)
T KOG1094|consen  667 NCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLTD  746 (807)
T ss_pred             ceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhhH
Confidence            899999999999999999855433322  233455678999999999999999999999999999974  5677753321


Q ss_pred             cCCCCCchhhHHHhhhc---CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQ---RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...-    ......+..   ..-.+.+..++...   -+++..||..|..+|||++++..++.-
T Consensus       747 e~vv----en~~~~~~~~~~~~~l~~P~~cp~~l---yelml~Cw~~es~~RPsFe~lh~~lq~  803 (807)
T KOG1094|consen  747 EQVV----ENAGEFFRDQGRQVVLSRPPACPQGL---YELMLRCWRRESEQRPSFEQLHLFLQE  803 (807)
T ss_pred             HHHH----HhhhhhcCCCCcceeccCCCcCcHHH---HHHHHHHhchhhhcCCCHHHHHHHHHH
Confidence            1100    000011110   11112233344443   368899999999999999999776653

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.70  E-value=2.1e-17  Score=118.85  Aligned_cols=137  Identities=12%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCC--------------------C--CCCcCeee
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMV--------------------M--TEKCDVYS   57 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~--------------------~--~~~~di~s   57 (160)
                      +||+++.++.+||+|||+++.+....... .....++.|++||.+....                    +  ....|+||
T Consensus       338 ~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwS  417 (507)
T PLN03224        338 ENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYT  417 (507)
T ss_pred             HhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhh
Confidence            58999999999999999987543322111 1123467899999875321                    1  12369999


Q ss_pred             hHHHHHHHHhcCC-ccccccccCCCC---CchhhHHHhhh-cCCCCCCCHHHHHHHHHHHHHHHhhhccCC---CCCCCH
Q 040414           58 FGVVTLEVLMGKH-PRDLLSSLSSSS---DPKIMLIDVLD-QRLPPPVDQKVIQDILLASTISFACLQSNP---KSRPTM  129 (160)
Q Consensus        58 ~G~~~~~l~~g~~-~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp---~~Rps~  129 (160)
                      +||++++|+++.. |+.....+....   ......+.... .....+.   .........+|+.++|..+|   .+|+|+
T Consensus       418 lGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~r~~~~~~~~~~~---~d~~s~~~~dLi~~LL~~~~~~~~~RlSa  494 (507)
T PLN03224        418 AGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRWRMYKGQKYDFSL---LDRNKEAGWDLACKLITKRDQANRGRLSV  494 (507)
T ss_pred             HHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHHHhhcccCCCccc---ccccChHHHHHHHHHhccCCCCcccCCCH
Confidence            9999999999865 554222111100   00111111111 1111111   11123346889999999765   689999


Q ss_pred             HHHHHHHhhhc
Q 040414          130 QYVSQEFLITR  140 (160)
Q Consensus       130 ~~~~~~~~~~~  140 (160)
                      ++++.|+||..
T Consensus       495 ~eaL~Hp~f~~  505 (507)
T PLN03224        495 GQALSHRFFLP  505 (507)
T ss_pred             HHHhCCCCcCC
Confidence            99999999964

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.69  E-value=2.2e-17  Score=103.76  Aligned_cols=87  Identities=28%  Similarity=0.427  Sum_probs=67.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC----CCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM----VMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~----~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +|||++.+|.||+||||.+-.+.++-..+ ...|...|+|||.+..+    .|+.++|+||+|+++.||.+++.||.   
T Consensus       178 sNiLIn~~GqVKiCDFGIsG~L~dSiAkt-~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~---  253 (282)
T KOG0984|consen  178 SNILINYDGQVKICDFGISGYLVDSIAKT-MDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYE---  253 (282)
T ss_pred             ceEEEccCCcEEEcccccceeehhhhHHH-HhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhcccccc---
Confidence            69999999999999999998776654322 13455679999987543    57789999999999999999999986   


Q ss_pred             ccCCCCCchhhHHHhhhc
Q 040414           77 SLSSSSDPKIMLIDVLDQ   94 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~   94 (160)
                         .+..+..++.++...
T Consensus       254 ---~w~tpF~qLkqvVee  268 (282)
T KOG0984|consen  254 ---SWGTPFQQLKQVVEE  268 (282)
T ss_pred             ---ccCCHHHHHHHHhcC
Confidence               345556666666544

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.69  E-value=3.3e-17  Score=113.48  Aligned_cols=142  Identities=20%  Similarity=0.281  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCC-C-----CCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVM-T-----EKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~-~-----~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      .|||+..++.+-|+|||++..+.....  .....+||..|||||++.+.-. .     .+.||||+|.|+|||+++..-+
T Consensus       345 kNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~  424 (534)
T KOG3653|consen  345 KNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDA  424 (534)
T ss_pred             cceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            499999999999999999987754322  2234789999999999976532 1     3589999999999999864332


Q ss_pred             cc----------ccccCCCCCchhhHHHhhhcCCCCCCC--HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           73 DL----------LSSLSSSSDPKIMLIDVLDQRLPPPVD--QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        73 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      +.          ...............-+...+..+.++  +........+++.+..||..|++.|.|+.-+.+..+-..
T Consensus       425 ~~~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~  504 (534)
T KOG3653|consen  425 DPGPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELM  504 (534)
T ss_pred             cCCCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHh
Confidence            10          011111222222222233333333222  222334456788999999999999999999988877665


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      ..
T Consensus       505 ~~  506 (534)
T KOG3653|consen  505 ML  506 (534)
T ss_pred             cc
Confidence            33

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.68  E-value=1.1e-16  Score=106.68  Aligned_cols=139  Identities=17%  Similarity=0.215  Sum_probs=92.1

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCC-------ccccccccccccCCcccc---c--CCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAY---T--MVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~---~--~~~~~~~di~s~G~~~~~l   65 (160)
                      +|||..+..   .+|||||.+...+.-...       ...+.+|+-.|||||+..   +  ..|+.++|.||+|+|+|-|
T Consensus       205 ENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYIm  284 (463)
T KOG0607|consen  205 ENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIM  284 (463)
T ss_pred             cceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHH
Confidence            588887554   479999988765432211       112356777899999753   2  2367899999999999999


Q ss_pred             HhcCCccccccccCCCCCch---------hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           66 LMGKHPRDLLSSLSSSSDPK---------IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ++|.+||...=. ....+..         ......-.+.+..|. ..........++++..+|..|+..|.++.+++.|+
T Consensus       285 LsGYpPFvG~Cg-~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPd-kdWahIS~eakdlisnLlvrda~~rlsa~~vlnhP  362 (463)
T KOG0607|consen  285 LSGYPPFVGHCG-ADCGWDRGEVCRVCQNKLFESIQEGKYEFPD-KDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHP  362 (463)
T ss_pred             HhCCCCccCccC-CcCCccCCCccHHHHHHHHHHHhccCCcCCh-hhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCc
Confidence            999999963211 1111111         122222222232221 22333344568899999999999999999999999


Q ss_pred             hhhcc
Q 040414          137 LITRK  141 (160)
Q Consensus       137 ~~~~~  141 (160)
                      |+.+.
T Consensus       363 w~~~~  367 (463)
T KOG0607|consen  363 WVQRC  367 (463)
T ss_pred             ccccc
Confidence            99873

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.67  E-value=4.2e-17  Score=117.14  Aligned_cols=132  Identities=23%  Similarity=0.366  Sum_probs=94.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      .||++++.|.+|+.|||.+..++.........+||++|++||+..   .+.+...+|+|++|+...|+...++|....-.
T Consensus       141 anilltd~gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhp  220 (829)
T KOG0576|consen  141 ANILLTDEGDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHP  220 (829)
T ss_pred             cceeecccCceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccch
Confidence            499999999999999999988776555556688999999999864   34477889999999999999988888543222


Q ss_pred             cCCCCCchhhHHHhhhcC--CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQR--LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      +.        ...++...  .++.. .....-...+-+|+..++.++|++||+++.++.|+++...
T Consensus       221 mr--------~l~LmTkS~~qpp~l-kDk~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~  277 (829)
T KOG0576|consen  221 MR--------ALFLMTKSGFQPPTL-KDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQT  277 (829)
T ss_pred             HH--------HHHHhhccCCCCCcc-cCCccchHHHHHHHHHHhcCCCccCCChhhheeceeeccc
Confidence            11        11111111  11111 1111122234578899999999999999999999887643

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.67  E-value=3.5e-17  Score=113.39  Aligned_cols=134  Identities=25%  Similarity=0.327  Sum_probs=89.3

Q ss_pred             CceeecC---CCceEEcccccceeccCCCC-------ccccccccccccCCcccccC----CCCCCcCeeehHHHHHHHH
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTM----VMTEKCDVYSFGVVTLEVL   66 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~----~~~~~~di~s~G~~~~~l~   66 (160)
                      .|||+..   -|.+||.|||+++.+.....       .+....||++|++||.+.-+    .++.++|+||+||++|.++
T Consensus       599 gNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQCl  678 (775)
T KOG1151|consen  599 GNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCL  678 (775)
T ss_pred             ccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhh
Confidence            4788853   47789999999998864322       22346789999999977544    3677899999999999999


Q ss_pred             hcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           67 MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .|+.||....+-- .-.....+........|+ .    +......++||.+||++.-++|....++..++++.-
T Consensus       679 YGrKPFGhnqsQQ-dILqeNTIlkAtEVqFP~-K----PvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  679 YGRKPFGHNQSQQ-DILQENTILKATEVQFPP-K----PVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             ccCCCCCCchhHH-HHHhhhchhcceeccCCC-C----CccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence            9999985111100 000000111111111111 1    111223578999999999999999999999988863

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2.2e-17  Score=118.46  Aligned_cols=129  Identities=24%  Similarity=0.313  Sum_probs=82.7

Q ss_pred             CceeecCCCceEEcccccceec---cCCCC---------------------------------------ccccccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLL---HADSS---------------------------------------NRTLLAGTYGY   38 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~---~~~~~---------------------------------------~~~~~~~~~~~   38 (160)
                      +|||||.+|++||.|||++..+   +++..                                       .....+||+.|
T Consensus       758 DNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~ny  837 (1034)
T KOG0608|consen  758 DNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNY  837 (1034)
T ss_pred             cceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcc
Confidence            5999999999999999998543   11100                                       00125799999


Q ss_pred             cCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHh-hhcCCCCCCCHHHHHHHHHHHHHHH-
Q 040414           39 IAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDV-LDQRLPPPVDQKVIQDILLASTISF-  116 (160)
Q Consensus        39 ~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-  116 (160)
                      ++||++.-..++..+|.||.|||+|+|+.|++||-........  .....++. +.-..-.++..+       +.+||. 
T Consensus       838 iapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq--~kv~nw~~~l~~~~~~~ls~e-------~~~li~k  908 (1034)
T KOG0608|consen  838 IAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQ--YKVINWRNFLHIPYQGNLSKE-------ALDLIQK  908 (1034)
T ss_pred             cChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcce--eeeeehhhccccccccccCHH-------HHHHHHH
Confidence            9999998888888999999999999999999999644432211  11111111 111111122222       234443 


Q ss_pred             hhhccCCCCC---CCHHHHHHHHhhhc
Q 040414          117 ACLQSNPKSR---PTMQYVSQEFLITR  140 (160)
Q Consensus       117 ~cl~~dp~~R---ps~~~~~~~~~~~~  140 (160)
                      .|...  +.|   --+++|..|+||+.
T Consensus       909 Lc~sa--d~RLGkng~d~vKaHpfFkg  933 (1034)
T KOG0608|consen  909 LCCSA--DSRLGKNGADQVKAHPFFKG  933 (1034)
T ss_pred             HhcCh--hhhhcccchhhhhcCccccc
Confidence            34433  344   34788999999986

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.66  E-value=3.2e-16  Score=115.23  Aligned_cols=128  Identities=25%  Similarity=0.356  Sum_probs=92.0

Q ss_pred             ceeecCCCceEEcccccceeccCCCCcccc--ccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~--~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      |||+....++|+.|||+++....+......  ..-.+.|++=|.++...++.++|+||+||++||++| |..|++...  
T Consensus       828 NVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~--  905 (1177)
T KOG1025|consen  828 NVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP--  905 (1177)
T ss_pred             heeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC--
Confidence            899999999999999999987654332222  223456899999998899999999999999999996 888876322  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ...+...+......+.++-+.-++   --++.+||..|++.||+++++...+-..-
T Consensus       906 ------~~eI~dlle~geRLsqPpiCtiDV---y~~mvkCwmid~~~rp~fkel~~~fs~~a  958 (1177)
T KOG1025|consen  906 ------AEEIPDLLEKGERLSQPPICTIDV---YMVMVKCWMIDADSRPTFKELAEEFSRMA  958 (1177)
T ss_pred             ------HHHhhHHHhccccCCCCCCccHHH---HHHHHHHhccCcccCccHHHHHHHHHHHh
Confidence                  233344444433344444444333   23667999999999999999877654443

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-16  Score=103.70  Aligned_cols=140  Identities=24%  Similarity=0.216  Sum_probs=91.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      .|+|+++|-.+||||||+++....+.... ...+-|.+|.+||++-+. .|+.+.||||+||++.|++.++..|+..++.
T Consensus       185 GNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILFQAq~Pi  264 (449)
T KOG0664|consen  185 GNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILFQAAGPI  264 (449)
T ss_pred             ccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhhhccChH
Confidence            48899999999999999999765443222 224457789999998765 4789999999999999999888888744332


Q ss_pred             CC-------CCCchhh---------HHHhhhcCCCCCC-------CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           79 SS-------SSDPKIM---------LIDVLDQRLPPPV-------DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        79 ~~-------~~~~~~~---------~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                      ..       ...+...         ..+++......+.       ....... .....++.+++++||++|.+.++.+.|
T Consensus       265 qQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~k~Ps~~vLYtlsS~~~~~-heav~~~~~~l~~d~dkris~~~A~~~  343 (449)
T KOG0664|consen  265 EQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGLRAPDTQRLYKIASPDDKN-HEAVDLLQKLLHFDPDKRISVEEALQH  343 (449)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCCCCCCccceeeecCCcccc-hHHHHHHHHHhCCCCcccccHhhhccc
Confidence            11       0000000         0111111111111       0000111 123567788999999999999999999


Q ss_pred             Hhhhcc
Q 040414          136 FLITRK  141 (160)
Q Consensus       136 ~~~~~~  141 (160)
                      ++..+.
T Consensus       344 ~~~~e~  349 (449)
T KOG0664|consen  344 RYLEEG  349 (449)
T ss_pred             cccccc
Confidence            987764

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.64  E-value=2.9e-16  Score=108.18  Aligned_cols=137  Identities=23%  Similarity=0.313  Sum_probs=91.1

Q ss_pred             ceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCC----C--CCCcCeeehHHHHHHHHhc---
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMV----M--TEKCDVYSFGVVTLEVLMG---   68 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~----~--~~~~di~s~G~~~~~l~~g---   68 (160)
                      |||+..+|.+-|+|+|++-...+...    .....+||..|||||++...-    +  -..+||||||.|+||+..+   
T Consensus       346 NILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~  425 (513)
T KOG2052|consen  346 NILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCES  425 (513)
T ss_pred             cEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhc
Confidence            89999999999999999976544321    234578999999999986542    1  1358999999999999753   


Q ss_pred             -------CCccccccccCCCCCchhhHHHhhhcCCCCCC--CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           69 -------KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPV--DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        69 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                             ++||......  .........-+...++.++.  .+........+.++|..||+.+|..|.|+-.+...+-..
T Consensus       426 ggi~eey~~Pyyd~Vp~--DPs~eeMrkVVCv~~~RP~ipnrW~s~~~l~~m~klMkeCW~~Np~aRltALriKKtl~~l  503 (513)
T KOG2052|consen  426 GGIVEEYQLPYYDVVPS--DPSFEEMRKVVCVQKLRPNIPNRWKSDPALRVMAKLMKECWYANPAARLTALRIKKTLAKL  503 (513)
T ss_pred             CCEehhhcCCcccCCCC--CCCHHHHhcceeecccCCCCCcccccCHHHHHHHHHHHHhhcCCchhhhHHHHHHHHHHHH
Confidence                   4566433221  11111222222223333332  344445555678899999999999999988776555443


Q ss_pred             c
Q 040414          140 R  140 (160)
Q Consensus       140 ~  140 (160)
                      .
T Consensus       504 ~  504 (513)
T KOG2052|consen  504 S  504 (513)
T ss_pred             h
Confidence            3

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.55  E-value=1.5e-15  Score=97.09  Aligned_cols=139  Identities=14%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             ceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            2 NIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         2 nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      |+++|+. -.++|+|+|++.+++...... ..+.+..|-.||.+..-+ +...-|+||+||++..|+..+.||.-.....
T Consensus       162 NvmIdh~~rkLrlIDWGLAEFYHp~~eYn-VRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFFhG~dN~  240 (338)
T KOG0668|consen  162 NVMIDHELRKLRLIDWGLAEFYHPGKEYN-VRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNY  240 (338)
T ss_pred             eeeechhhceeeeeecchHhhcCCCceee-eeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCcccCCCCCH
Confidence            8899854 568999999999877654432 345677889999886544 6888999999999999999988875221111


Q ss_pred             CCCCchhhHHHhh----------hcCCCCC--C----------------CHHHH-HHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           80 SSSDPKIMLIDVL----------DQRLPPP--V----------------DQKVI-QDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        80 ~~~~~~~~~~~~~----------~~~~~~~--~----------------~~~~~-~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      .   +...+..++          +..+..+  +                ..... -......+|+.++|..|..+|+|+.
T Consensus       241 D---QLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDlldklLrYDHqeRlTak  317 (338)
T KOG0668|consen  241 D---QLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLLDKLLRYDHQERLTAK  317 (338)
T ss_pred             H---HHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHHHHHHhhccccccchH
Confidence            0   001111110          0111000  0                00000 0013468899999999999999999


Q ss_pred             HHHHHHhhhccCcc
Q 040414          131 YVSQEFLITRKTPL  144 (160)
Q Consensus       131 ~~~~~~~~~~~~~~  144 (160)
                      +++.|++|......
T Consensus       318 Eam~HpyF~~~~~~  331 (338)
T KOG0668|consen  318 EAMAHPYFAPVREA  331 (338)
T ss_pred             HHhcCchHHHHHHH
Confidence            99999999875433

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=4.5e-15  Score=108.98  Aligned_cols=139  Identities=18%  Similarity=0.226  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCCCCC-CcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMVMTE-KCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~-~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|+++..+|.+||+|||.+......-.    .....+|+-.|+|||++.+..+.+ ..||||+|+++..|.+|+.||...
T Consensus       449 enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a  528 (601)
T KOG0590|consen  449 ENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVA  528 (601)
T ss_pred             ccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccc
Confidence            589999999999999999865432211    223466888999999999988865 479999999999999999998633


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .......   ..........................+.++-++|+.||.+|.|+++|++..|++.-.
T Consensus       529 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i~  592 (601)
T KOG0590|consen  529 KKSDNSF---KTNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSIE  592 (601)
T ss_pred             cccccch---hhhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhcc
Confidence            2211110   000000001111111111122223456788999999999999999999999998754

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.49  E-value=5.7e-14  Score=90.50  Aligned_cols=93  Identities=33%  Similarity=0.534  Sum_probs=74.6

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      .||+++. ++.++|+|||.+..............+...|.+||..... ..+.+.|+|++|++++++             
T Consensus       121 ~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------  187 (215)
T cd00180         121 ENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------  187 (215)
T ss_pred             hhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------
Confidence            4899998 8999999999987654432112234466789999998776 667889999999999998             


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                                                    ..+.+++..|+..+|+.||+++++++++
T Consensus       188 ------------------------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 ------------------------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             ------------------------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                                          3357899999999999999999998764

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.47  E-value=7.7e-14  Score=99.08  Aligned_cols=138  Identities=24%  Similarity=0.418  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccC--CCCccccccccccccCCcccccCC-------CCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHA--DSSNRTLLAGTYGYIAPELAYTMV-------MTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~--~~~~~~~~~~~~~~~~Pe~~~~~~-------~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +|.++|..+.+|++|||+......  ............-|.+||.+....       .+.++|+||+|++++|+++...|
T Consensus        78 ~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~  157 (484)
T KOG1023|consen   78 SNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGP  157 (484)
T ss_pred             ccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCc
Confidence            478999999999999999876532  111112222445699999987641       35569999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhh-c-C-CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLD-Q-R-LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      |+....   ...+......+.. . . ..+...... .....+..++..||..+|..||+++++-.........
T Consensus       158 ~~~~~~---~~~~~eii~~~~~~~~~~~rP~i~~~~-e~~~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~  227 (484)
T KOG1023|consen  158 FDLRNL---VEDPDEIILRVKKGGSNPFRPSIELLN-ELPPELLLLVARCWEEIPEKRPSIEQIRSKLLTINKG  227 (484)
T ss_pred             cccccc---cCChHHHHHHHHhcCCCCcCcchhhhh-hcchHHHHHHHHhcccChhhCccHHHHHhhhhhhccc
Confidence            974332   1222233333222 1 1 122221111 2222467899999999999999999998776665543

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.3e-14  Score=99.99  Aligned_cols=124  Identities=26%  Similarity=0.407  Sum_probs=85.1

Q ss_pred             CceeecCCCceEEcccccceeccCCC------CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS------SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~------~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~   73 (160)
                      +||+...+..+||.|||+...+....      ..+....||..|++||.+.+..++.++||||+|++++|++. ....+.
T Consensus       385 ~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e  464 (516)
T KOG1033|consen  385 SNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE  464 (516)
T ss_pred             cccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH
Confidence            47888888889999999976544332      12334678999999999999999999999999999999986 333332


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ...          .....-++.+++.+    ......-..|++.+++..|..||++.+...|.|.
T Consensus       465 r~~----------t~~d~r~g~ip~~~----~~d~p~e~~ll~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  465 RIA----------TLTDIRDGIIPPEF----LQDYPEEYTLLQQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             HHH----------hhhhhhcCCCChHH----hhcCcHHHHHHHHhcCCCcccCchHHHHhhhhhc
Confidence            111          11222223333222    2222223579999999999999977776666553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.38  E-value=6.8e-13  Score=87.25  Aligned_cols=122  Identities=16%  Similarity=0.322  Sum_probs=81.4

Q ss_pred             eeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC---CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            3 IILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM---TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         3 ill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~---~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      |++|++.+.+|+ .+-.++..+..    ....++.|++||.++..+-   -.++|||||++++||+.++..||...+++.
T Consensus       322 vmidedltaris-mad~kfsfqe~----gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspme  396 (448)
T KOG0195|consen  322 VMIDEDLTARIS-MADTKFSFQEV----GRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPME  396 (448)
T ss_pred             EEecchhhhhee-cccceeeeecc----ccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchh
Confidence            566666666654 23333222111    1345778999999976543   346899999999999999999998776654


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      .+.   ....+.+...+|+.....       +..++.-|+..||.+||.++.++-.+...
T Consensus       397 cgm---kialeglrv~ippgis~h-------m~klm~icmnedpgkrpkfdmivpilekm  446 (448)
T KOG0195|consen  397 CGM---KIALEGLRVHIPPGISRH-------MNKLMNICMNEDPGKRPKFDMIVPILEKM  446 (448)
T ss_pred             hhh---hhhhccccccCCCCccHH-------HHHHHHHHhcCCCCcCCCcceehhhHHHh
Confidence            332   223344445555543322       35678889999999999999887766543

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.35  E-value=1.1e-12  Score=95.22  Aligned_cols=72  Identities=38%  Similarity=0.464  Sum_probs=59.8

Q ss_pred             Cceeec--CCC--ceEEcccccceeccCCCCccccccccccccCCcccc-cCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILN--SNL--EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-TMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~--~~~--~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      .||++.  .+|  .-||+|||.|+.+..+. ...+.+||..|++||.+. ++.++..+|.||+||++|+++||..||-
T Consensus       149 ~NIvl~~Gedgq~IyKLtDfG~Arel~d~s-~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~  225 (732)
T KOG4250|consen  149 GNIVLQIGEDGQSIYKLTDFGAARELDDNS-LFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFI  225 (732)
T ss_pred             CcEEEeecCCCceEEeeecccccccCCCCC-eeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCC
Confidence            477774  333  35999999999876543 566788999999999998 5778889999999999999999999985

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.33  E-value=3.6e-13  Score=96.60  Aligned_cols=118  Identities=25%  Similarity=0.344  Sum_probs=85.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.+|++++.|||.++........    +|+..|++||+..  ....++|.||+|++.+++++|..||..      
T Consensus       126 enilld~~Ghi~~tdfglske~v~~~~~----cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~~------  193 (612)
T KOG0603|consen  126 ENVLLLLEGHIKLTDFGLSKEAVKEKIA----CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFGG------  193 (612)
T ss_pred             cceeecccCccccCCchhhhHhHhhhhc----ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCch------
Confidence            5999999999999999999865443322    6899999999998  346788999999999999999999873      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                           .............|  ..   ....+.+++..++..+|.+|.-     ..++.+|.++..
T Consensus       194 -----~~~~~Il~~~~~~p--~~---l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~  248 (612)
T KOG0603|consen  194 -----DTMKRILKAELEMP--RE---LSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQS  248 (612)
T ss_pred             -----HHHHHHhhhccCCc--hh---hhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchhee
Confidence                 11122222222221  11   2223467888888889988854     578888887764

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.33  E-value=7.4e-13  Score=86.83  Aligned_cols=135  Identities=21%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             Cceeec-C-CCceEEcccccceeccCCCCccccccccccccCCcccccC---C--CCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILN-S-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM---V--MTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~-~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~---~--~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +|||+- . .-.+||||||..+..+.....   ......|-+||.+...   .  ..+..|+|.||++++.+++|.+||+
T Consensus       150 eNiLif~~df~rvKlcDFG~t~k~g~tV~~---~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQ  226 (378)
T KOG1345|consen  150 ENILIFDADFYRVKLCDFGLTRKVGTTVKY---LEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQ  226 (378)
T ss_pred             ceEEEecCCccEEEeeecccccccCceehh---hhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcch
Confidence            588884 2 347999999998754322111   2223347778765432   2  3567899999999999999999998


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC---CCHHHHHHHHhhhccC
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR---PTMQYVSQEFLITRKT  142 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R---ps~~~~~~~~~~~~~~  142 (160)
                      ...........-....+.    ..+..+..+......+..+..+-+..++++|   -++......+|.....
T Consensus       227 ka~~~d~~Y~~~~~w~~r----k~~~~P~~F~~fs~~a~r~Fkk~lt~~~~drcki~~~kk~rk~~w~E~~i  294 (378)
T KOG1345|consen  227 KASIMDKPYWEWEQWLKR----KNPALPKKFNPFSEKALRLFKKSLTPRFKDRCKIWTAKKMRKCLWKEKLI  294 (378)
T ss_pred             hhhccCchHHHHHHHhcc----cCccCchhhcccCHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHhhh
Confidence            554443332222222222    2223333333333445678888999999999   6677777777776533

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.28  E-value=6.2e-13  Score=94.94  Aligned_cols=71  Identities=24%  Similarity=0.400  Sum_probs=61.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||.++++|.+||+|||.+....+  .+...+.||..|.|||++.+.+| +...|||++|+++|.++...-||-
T Consensus       699 envivd~~g~~klidfgsaa~~ks--gpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyy  770 (772)
T KOG1152|consen  699 ENVIVDSNGFVKLIDFGSAAYTKS--GPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYY  770 (772)
T ss_pred             ccEEEecCCeEEEeeccchhhhcC--CCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCc
Confidence            699999999999999999886543  34567889999999999999887 567899999999999988877763

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.26  E-value=1.9e-12  Score=97.89  Aligned_cols=131  Identities=21%  Similarity=0.244  Sum_probs=93.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---------------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---------------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---------------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l   65 (160)
                      +|+++..-|++|+.|||+++...-...               .....+||+.|.|||++.-..|+..+|+|++|+++|+.
T Consensus       172 dnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeF  251 (1205)
T KOG0606|consen  172 DNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEF  251 (1205)
T ss_pred             CcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhhhccCCCccHHHHHHHHHHH
Confidence            488999999999999999874311100               01124789999999999888899999999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC---CCHHHHHHHHhhhc
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR---PTMQYVSQEFLITR  140 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R---ps~~~~~~~~~~~~  140 (160)
                      +.|..||+       +..+.....+++.-.+..+-.  ........++++.++|+.+|..|   ..+-+|.+|.+|..
T Consensus       252 LVgcvpff-------Gdtpeelfg~visd~i~wpE~--dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~  320 (1205)
T KOG0606|consen  252 LVGCVPFF-------GDTPEELFGQVISDDIEWPEE--DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQL  320 (1205)
T ss_pred             heeeeecc-------CCCHHHHHhhhhhhhcccccc--CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceee
Confidence            99999997       333444444443332222111  11112234788999999999999   45778888888875

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.24  E-value=1.4e-11  Score=80.44  Aligned_cols=73  Identities=36%  Similarity=0.498  Sum_probs=58.2

Q ss_pred             CceeecCCCceEEcccccceeccCCC-CccccccccccccCCccc-ccCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELA-YTMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~-~~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+++.++.++|+|||.+....... .......++..|++||.+ ....++.++|+|++|++++++++|+.||.
T Consensus       127 ~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~pf~  201 (225)
T smart00221      127 ENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEPFS  201 (225)
T ss_pred             HHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCCcc
Confidence            38999999999999999988765432 111234466779999988 55556778999999999999999999986

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.24  E-value=7.9e-13  Score=88.62  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC--------CCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM--------VMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~--------~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +|++++.+|.+.|+||+.....+.....   ...+..|.+||.....        .++.+.|.|++|+++|.++++..||
T Consensus       174 ~nfll~~~G~v~Lg~F~~~~r~g~~~~~---~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~ly~lWC~~lPf  250 (288)
T PF14531_consen  174 ENFLLDQDGGVFLGDFSSLVRAGTRYRC---SEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITLYSLWCGRLPF  250 (288)
T ss_dssp             GGEEE-TTS-EEE--GGGEEETTEEEEG---GGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHHHHHHHSS-ST
T ss_pred             eeEEEcCCCCEEEcChHHHeecCceeec---cCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHHHHHHHccCCC
Confidence            5899999999999999877654332211   2234568899876432        3566789999999999999999998


Q ss_pred             ccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR  126 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  126 (160)
                      ...........       .+         ..|......++.|+..+|+.+|.+|
T Consensus       251 ~~~~~~~~~~~-------~f---------~~C~~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  251 GLSSPEADPEW-------DF---------SRCRDMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             CCCGGGSTSGG-------GG---------TTSS---HHHHHHHHHHT-SSGGGS
T ss_pred             CCCCccccccc-------cc---------hhcCCcCHHHHHHHHHHccCCcccC
Confidence            74433221111       11         1111333446889999999999887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.21  E-value=2.6e-11  Score=92.44  Aligned_cols=124  Identities=21%  Similarity=0.237  Sum_probs=77.0

Q ss_pred             CceeecCCCceEEcccccceecc--CCCCc-----cccccccccccCCcccccC----------C-CCCCcCeeehHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLH--ADSSN-----RTLLAGTYGYIAPELAYTM----------V-MTEKCDVYSFGVVT   62 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~--~~~~~-----~~~~~~~~~~~~Pe~~~~~----------~-~~~~~di~s~G~~~   62 (160)
                      +|||+++=..+.|+||..-+...  .+...     ..+...-.+|.|||.+...          . .+++.||||+||++
T Consensus       149 ENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCVi  228 (1431)
T KOG1240|consen  149 ENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVI  228 (1431)
T ss_pred             ceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHH
Confidence            69999988889999998755321  11111     1122233379999976431          1 56789999999999


Q ss_pred             HHHHh-cCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           63 LEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        63 ~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                      +|+++ |.++|..-.-+.=...........+.....           ...+.|+..|++.||.+|.++++.|+.
T Consensus       229 aELf~Eg~PlF~LSQL~aYr~~~~~~~e~~Le~Ied-----------~~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  229 AELFLEGRPLFTLSQLLAYRSGNADDPEQLLEKIED-----------VSLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             HHHHhcCCCcccHHHHHhHhccCccCHHHHHHhCcC-----------ccHHHHHHHHHccCchhccCHHHHHHh
Confidence            99996 788885211111000001111111111111           124779999999999999999999886

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.16  E-value=1.6e-11  Score=84.49  Aligned_cols=110  Identities=22%  Similarity=0.268  Sum_probs=68.3

Q ss_pred             ccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccc-ccC---------------------CC------C
Q 040414           32 LAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLS-SLS---------------------SS------S   82 (160)
Q Consensus        32 ~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~-~~~---------------------~~------~   82 (160)
                      ..||++|.|||++...+ .+++.||||.|+++..++++..||.... ...                     ..      .
T Consensus       237 rAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~dd~~al~ei~tifG~~~mrk~A~l~g~~~l~~ks  316 (418)
T KOG1167|consen  237 RAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKDDADALAEIATIFGSAEMRKCAALPGRILLWQKS  316 (418)
T ss_pred             cCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCccccchHHHHHHHhChHHHHHHhhcCCceeeeccc
Confidence            57999999999986543 5788999999999999999998874110 000                     00      0


Q ss_pred             CchhhHH----------HhhhcCCCCCCCHHHHH--HHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           83 DPKIMLI----------DVLDQRLPPPVDQKVIQ--DILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        83 ~~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .......          ..+.....++.......  ....+.+|+.+|++.||.+|.|+|++|.|+||...
T Consensus       317 n~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~  387 (418)
T KOG1167|consen  317 NIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDEA  387 (418)
T ss_pred             cccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcch
Confidence            0000000          00000000000000000  11245789999999999999999999999999853

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.93  E-value=4.3e-09  Score=72.06  Aligned_cols=136  Identities=24%  Similarity=0.311  Sum_probs=89.6

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCC------ccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSS------NRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~------~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +||+++..+ .++++|||.++.......      ......++..|.+||.+.+   .......|+|++|+++++++.+..
T Consensus       130 ~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~~~~~~~  209 (384)
T COG0515         130 ENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYELLTGLP  209 (384)
T ss_pred             HHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHHHHhCCC
Confidence            489999888 799999999885543321      2345678899999999887   456788999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCC----CCCHHH-HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPP----PVDQKV-IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ||......    .........+......    ...... ........+++..++..+|..|.+......+.+...
T Consensus       210 p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~  280 (384)
T COG0515         210 PFEGEKNS----SATSQTLKIILELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAH  280 (384)
T ss_pred             CCCCCCcc----ccHHHHHHHHHhcCCcccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhC
Confidence            86522211    0111222222111111    111110 111123467888999999999999998888755544

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.55  E-value=1.9e-08  Score=74.62  Aligned_cols=132  Identities=20%  Similarity=0.224  Sum_probs=88.7

Q ss_pred             CceeecCCC-ceEEcccccceeccC-CCC--ccccccc-cccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHA-DSS--NRTLLAG-TYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~-~~~--~~~~~~~-~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|.+++..+ ..++.|||++..+.. ...  ......| ++.|.+||...+.. .....|+||+|+++..+.+|..|++.
T Consensus       153 ~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~  232 (601)
T KOG0590|consen  153 SNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDF  232 (601)
T ss_pred             ccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCccc
Confidence            478888888 899999999986654 221  1223557 88999999988743 46778999999999999999998753


Q ss_pred             ccccCCCCCchhhHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .........      ......-. ...+.  -.......+++.+++..+|..|.+.+++..+.|+..
T Consensus       233 ~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  233 PSRKDGRYS------SWKSNKGRFTQLPW--NSISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             cccccccce------eecccccccccCcc--ccCChhhhhcccccccCCchhccccccccccccccc
Confidence            322211100      00001000 00000  011112356778899999999999999999999988

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.55  E-value=3e-07  Score=64.17  Aligned_cols=121  Identities=22%  Similarity=0.329  Sum_probs=71.5

Q ss_pred             Cceeec--CCCc--eEEcccccceeccCCCC------ccccccccccccCCcccccCC------CCCCcCeeehHHHHHH
Q 040414            1 NNIILN--SNLE--AFVADFGTARLLHADSS------NRTLLAGTYGYIAPELAYTMV------MTEKCDVYSFGVVTLE   64 (160)
Q Consensus         1 ~nill~--~~~~--~kl~d~g~~~~~~~~~~------~~~~~~~~~~~~~Pe~~~~~~------~~~~~di~s~G~~~~~   64 (160)
                      +|||+.  .++.  +.++|||++-.-.+..-      ......|.-..++||+....+      .-.++|.|++|.+.||
T Consensus       370 DNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYE  449 (598)
T KOG4158|consen  370 DNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYE  449 (598)
T ss_pred             cceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHH
Confidence            488884  4443  46799998754322110      111233556789999864332      1247899999999999


Q ss_pred             HHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHH
Q 040414           65 VLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQY  131 (160)
Q Consensus        65 l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~  131 (160)
                      ++...-||.....+--..       ........++.+..++.   .+++++...|+.||.+|++..-
T Consensus       450 Ifg~~NPFY~rGem~L~~-------r~Yqe~qLPalp~~vpp---~~rqlV~~lL~r~pskRvsp~i  506 (598)
T KOG4158|consen  450 IFGRSNPFYKRGEMLLDT-------RTYQESQLPALPSRVPP---VARQLVFDLLKRDPSKRVSPNI  506 (598)
T ss_pred             HhccCCcccccchheech-------hhhhhhhCCCCcccCCh---HHHHHHHHHhcCCccccCCccH
Confidence            998888885321111000       01111222333333332   2477888999999999999543

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.29  E-value=1.2e-05  Score=57.00  Aligned_cols=138  Identities=17%  Similarity=0.251  Sum_probs=82.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhc-CCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMG-KHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g-~~~~~~   74 (160)
                      +|+|+++++.|.|.|-..-.. ......+...+|...|++||.-.     +..-+...|.|.+|+++++++.| ..||..
T Consensus       146 ~~~lVsd~~~V~LVdsDsfqi-~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysG  224 (637)
T COG4248         146 NSFLVSDDSKVVLVDSDSFQI-NANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSG  224 (637)
T ss_pred             cceeeecCceEEEEcccceee-ccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCc
Confidence            578999999999987654433 23333344566888999999643     11224568999999999999876 899864


Q ss_pred             ccccCCCCCchh-hH--------HHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccC--CCCCCCHHHHHHHHhhh
Q 040414           75 LSSLSSSSDPKI-ML--------IDVLDQRLPPPVDQKVIQDILLASTISFACLQSN--PKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        75 ~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~d--p~~Rps~~~~~~~~~~~  139 (160)
                      ..-......+.. .+        .+.-.+..+.+......-....++.|..+|...-  +..|||++.++..+--.
T Consensus       225 I~~~~~ap~p~E~~Ia~g~f~ya~~~~~g~~p~P~~~P~~~Lpp~vqAlF~qaF~~~~~~~~RP~a~aW~aAl~al  300 (637)
T COG4248         225 IPLISDAPNPLETDIAHGRFAYASDQRRGLKPPPRSIPLSMLPPDVQALFQQAFTESGVATPRPTAKAWVAALDAL  300 (637)
T ss_pred             ccccCCCCCcchhhhhcceeeechhccCCCCCCCCCCChhhcCHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHH
Confidence            433222111111 01        1111122233332222223334567777888543  67999999888776544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.25  E-value=4.4e-07  Score=66.94  Aligned_cols=131  Identities=19%  Similarity=0.185  Sum_probs=79.0

Q ss_pred             ceeecCCCceEEcccccceeccCCCCc-c--------ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSN-R--------TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHP   71 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~-~--------~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~   71 (160)
                      +|.++.++.+||+.|+.+.-..+.... .        ........|.+||++.+...+.++|++|+|+++|.+.. |+..
T Consensus       130 ~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~~sd~fSlG~li~~i~~~gk~i  209 (700)
T KOG2137|consen  130 AIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTPASDVFSLGVLIYTIYNGGKSI  209 (700)
T ss_pred             heeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccccccccccceeeeeEEEEEecCCcch
Confidence            578889999999999876543321110 0        00122346999999988777889999999999999884 5554


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      +....... ...........-........+.+       +.+-+.+++..++..||++..+...+++..
T Consensus       210 ~~a~~~~~-~~~~~~~~~~~~~~~~s~~~p~e-------l~~~l~k~l~~~~~~rp~~~~l~~~~ff~D  270 (700)
T KOG2137|consen  210 IAANGGLL-SYSFSRNLLNAGAFGYSNNLPSE-------LRESLKKLLNGDSAVRPTLDLLLSIPFFSD  270 (700)
T ss_pred             hhccCCcc-hhhhhhcccccccccccccCcHH-------HHHHHHHHhcCCcccCcchhhhhcccccCC
Confidence            43111100 00000000000001111222222       345567899999999999998888888765

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.97  E-value=3e-06  Score=57.94  Aligned_cols=101  Identities=22%  Similarity=0.276  Sum_probs=63.6

Q ss_pred             ccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHH
Q 040414           34 GTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST  113 (160)
Q Consensus        34 ~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (160)
                      +-++|-+||.-.....+.++|||++|+...+|.-+...-....+   .......+...+.. ...+     .     -.+
T Consensus       244 ~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS---~~~~ee~ia~~i~~-len~-----l-----qr~  309 (458)
T KOG1266|consen  244 SLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSES---KVEVEENIANVIIG-LENG-----L-----QRG  309 (458)
T ss_pred             cCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcc---eeehhhhhhhheee-ccCc-----c-----ccC
Confidence            45578888876666667789999999999998877544210000   01111111111111 0000     0     145


Q ss_pred             HHHhhhccCCCCCCCHHHHHHHHhhhccCcccccc
Q 040414          114 ISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHA  148 (160)
Q Consensus       114 l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~  148 (160)
                      ++.+|++..|.+||+|..++.|+...+......-.
T Consensus       310 ~i~kcl~~eP~~rp~ar~llfHpllfeVhslkll~  344 (458)
T KOG1266|consen  310 SITKCLEGEPNGRPDARLLLFHPLLFEVHSLKLLM  344 (458)
T ss_pred             cCcccccCCCCCCcchhhhhcCceeeecchHHHHh
Confidence            77899999999999999999999988876654433

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.96  E-value=3.8e-05  Score=53.35  Aligned_cols=132  Identities=18%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             CceeecCC-----CceEEcccccce--eccCCCC-----c---cccccccccccCCcccccCCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSN-----LEAFVADFGTAR--LLHADSS-----N---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~-----~~~kl~d~g~~~--~~~~~~~-----~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l   65 (160)
                      +|+++...     ..+.+.|||+++  .......     .   .....||..|.++.+..+...+.+.|+||++-++.++
T Consensus       151 ~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~el  230 (322)
T KOG1164|consen  151 ENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLLEL  230 (322)
T ss_pred             HHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHHHH
Confidence            36777644     358999999998  3221111     1   1224488999999988888889999999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ..|..||........    ....................+..   +..+...+-..+...+|.-..+...+...
T Consensus       231 ~~g~LPW~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~  297 (322)
T KOG1164|consen  231 LKGSLPWEALEMTDL----KSKFEKDPRKLLTDRFGDLKPEE---FAKILEYIDSLDYEDKPDYEKLAELLKDV  297 (322)
T ss_pred             hcCCCCCccccccch----HHHHHHHhhhhccccccCCChHH---HHHHHHHhhccCCcCCCCHHHHHHHHHHH
Confidence            999999853332111    11111111111111011111112   23344444457888999988887775433

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.95  E-value=5.3e-06  Score=64.24  Aligned_cols=102  Identities=24%  Similarity=0.339  Sum_probs=74.5

Q ss_pred             ccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHH
Q 040414           32 LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA  111 (160)
Q Consensus        32 ~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (160)
                      ..+++.|.+||...+......+|.|+.|+++++.++|.+||+       ...+...........++.+.....  .....
T Consensus       995 ~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~n-------a~tpq~~f~ni~~~~~~~p~g~~~--~s~~a 1065 (1205)
T KOG0606|consen  995 VVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFN-------AETPQQIFENILNRDIPWPEGPEE--GSYEA 1065 (1205)
T ss_pred             ccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCC-------CcchhhhhhccccCCCCCCCCccc--cChhh
Confidence            467889999999999988899999999999999999999997       333333333344444444332221  22234


Q ss_pred             HHHHHhhhccCCCCCCCHH---HHHHHHhhhccC
Q 040414          112 STISFACLQSNPKSRPTMQ---YVSQEFLITRKT  142 (160)
Q Consensus       112 ~~l~~~cl~~dp~~Rps~~---~~~~~~~~~~~~  142 (160)
                      ++++...+..++.+|..+.   ++-.|.++....
T Consensus      1066 q~~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~ 1099 (1205)
T KOG0606|consen 1066 QDLINRLLTEEPTQRLGAKGAAEVKGHPFFQDVD 1099 (1205)
T ss_pred             hhhhhhhhccCchhccCcccccccccCCccCCCC
Confidence            6788889999999998877   788888877643

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.82  E-value=0.0001  Score=50.79  Aligned_cols=76  Identities=21%  Similarity=0.302  Sum_probs=59.5

Q ss_pred             CceeecCCC-----ceEEcccccceeccCCCCc-------cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNL-----EAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~-----~~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +|.||...+     .+.++|||+++.+......       .....||-.||+--...+..-+.+-|+=|+|=++.+.+.|
T Consensus       153 dNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRG  232 (449)
T KOG1165|consen  153 DNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG  232 (449)
T ss_pred             cceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccC
Confidence            588887544     4688999999987654321       1235688899998887777778889999999999999999


Q ss_pred             CCcccccc
Q 040414           69 KHPRDLLS   76 (160)
Q Consensus        69 ~~~~~~~~   76 (160)
                      ..||+.+.
T Consensus       233 sLPWQGLK  240 (449)
T KOG1165|consen  233 SLPWQGLK  240 (449)
T ss_pred             CCcccccc
Confidence            99998554

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.67  E-value=3.8e-05  Score=55.91  Aligned_cols=127  Identities=24%  Similarity=0.274  Sum_probs=79.0

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccc-----cccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRT-----LLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~-----~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||++..+ ..++++|||....++...-...     ...+...|++||...+. ++...|++++|.++.+...+...+..
T Consensus       251 ~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l-~~~~~di~sl~ev~l~~~l~~~~~~~  329 (524)
T KOG0601|consen  251 ANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGL-ATFASDIFSLGEVILEAILGSHLPSV  329 (524)
T ss_pred             hheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccc-cchHhhhcchhhhhHhhHhhcccccC
Confidence            36777777 7789999998877665432211     11345579999998754 56788999999999999888766542


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ...-. +..    +.+   ..++..+....   ...+...+.++++.++-.|++...+..+.++.
T Consensus       330 g~~~~-W~~----~r~---~~ip~e~~~~~---s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~  383 (524)
T KOG0601|consen  330 GKNSS-WSQ----LRQ---GYIPLEFCEGG---SSSLRSVTSQMLDEDPRLRLTAQILTALNVIH  383 (524)
T ss_pred             CCCCC-ccc----ccc---ccCchhhhcCc---chhhhhHHHHhcCcchhhhhHHHHHhcccccc
Confidence            21000 100    000   01222111111   11122366789999999999999888876665

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=97.63  E-value=4.1e-05  Score=58.27  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVV   61 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~   61 (160)
                      +|||++.++.+||+|||+++.............+++.|.+||...... ....+++|++|.-
T Consensus       133 ~NILl~~~g~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~s~~~s~g~~  194 (669)
T cd05610         133 DNMLISNEGHIKLTDFGLSKVTLNRELNMMDILTTPSMAKPKNDYSRTPGQVLSLISSLGFN  194 (669)
T ss_pred             HHEEEcCCCCEEEEeCCCCccccCCcccccccccCccccCccccccCCCCceeeeeeecCcC
Confidence            489999999999999999987654443444566888999998654432 2334677888843

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PRK09188 serine/threonine protein kinase; Provisional

Probab=97.48  E-value=0.00012  Score=51.69  Aligned_cols=47  Identities=21%  Similarity=0.179  Sum_probs=34.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--------cccccccccccCCcccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--------RTLLAGTYGYIAPELAYTM   47 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--------~~~~~~~~~~~~Pe~~~~~   47 (160)
                      +|||++.++.++|+|||+++.+......        ..+..+++.|++||.+...
T Consensus       141 ~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        141 QNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             ceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCCcccCChh
Confidence            5999999999999999999876432210        0234567779999988644

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=97.33  E-value=0.00022  Score=47.17  Aligned_cols=76  Identities=21%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCc-------cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|.|+.-   -..+.++|||+++.+......       .....||..|.+--+..+...+.+-|+-|+|-++...-.|..
T Consensus       140 dNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~L  219 (341)
T KOG1163|consen  140 DNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSL  219 (341)
T ss_pred             cceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCC
Confidence            3666653   234688999999876543221       123567878888766665556778899999999988888999


Q ss_pred             cccccc
Q 040414           71 PRDLLS   76 (160)
Q Consensus        71 ~~~~~~   76 (160)
                      ||+...
T Consensus       220 PWQglk  225 (341)
T KOG1163|consen  220 PWQGLK  225 (341)
T ss_pred             cccccc
Confidence            998554

>PRK12274 serine/threonine protein kinase; Provisional

Probab=97.20  E-value=0.00012  Score=47.54  Aligned_cols=73  Identities=10%  Similarity=-0.043  Sum_probs=45.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----c---------ccccccccccCCcccccC-CCC-CCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----R---------TLLAGTYGYIAPELAYTM-VMT-EKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~---------~~~~~~~~~~~Pe~~~~~-~~~-~~~di~s~G~~~~~l   65 (160)
                      +|||++.++.++|+|||++.........    .         .-...++.++.|+-..-. ..+ .+.+.++.|.-+|.+
T Consensus       121 ~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~l~~~~~~~l~~~~~~~~~w~~~g~~~~~~  200 (218)
T PRK12274        121 ANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAALTPVERRVLKRTSWIRELWFATGKPVYRF  200 (218)
T ss_pred             ceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHhhhccchhHHHHHHHhcchHHHH
Confidence            5999999999999999999854432210    0         001123445555432211 111 345667889999999


Q ss_pred             HhcCCccc
Q 040414           66 LMGKHPRD   73 (160)
Q Consensus        66 ~~g~~~~~   73 (160)
                      +|+..++-
T Consensus       201 ~~~~~~~~  208 (218)
T PRK12274        201 VTRRVLHW  208 (218)
T ss_pred             HhccCCcc
Confidence            99887753

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=97.18  E-value=7.1e-05  Score=49.36  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l   65 (160)
                      +|++++.+| ++++|||........... .           .......+..++|+|++|+++...
T Consensus       164 ~Nili~~~g-i~liDfg~~~~~~e~~a~-d-----------~~vler~y~~~~di~~lg~~~~~~  215 (232)
T PRK10359        164 GNFIVSKNG-LRIIDLSGKRCTAQRKAK-D-----------RIDLERHYGIKNEIKDLGYYLLIY  215 (232)
T ss_pred             HHEEEeCCC-EEEEECCCcccccchhhH-H-----------HHHHHhHhcccccccceeEeehHH
Confidence            589999888 999999977643221110 0           022223345679999999887754

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=94.67  E-value=0.028  Score=41.58  Aligned_cols=123  Identities=20%  Similarity=0.173  Sum_probs=72.1

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccc-cCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGY-IAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~-~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||++..+ +..++.|||++..+.-.......  ....| .++.......+..+.|++++|..+.+.+++.+.-...   
T Consensus       395 sni~i~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~---  469 (524)
T KOG0601|consen  395 SNILISNDGFFSKLGDFGCWTRLAFSSGVFHH--IDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESG---  469 (524)
T ss_pred             cceeeccchhhhhccccccccccceecccccc--cccccccchhhccccccccccccccccccccccccCcccCccc---
Confidence            58888876 77889999987643221111111  12223 2444555556678899999999999888776542100   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .. +..+.....+..+...    ..+..+...++..++..|+.+.++..|..+..
T Consensus       470 -------~~-~~~i~~~~~p~~~~~~----~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  470 -------VQ-SLTIRSGDTPNLPGLK----LQLQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             -------cc-ceeeecccccCCCchH----HhhhhhhhhhcCCccccchhhhhhcccchhhh
Confidence                   00 1111111111111111    12356777789999999999998887776654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.57  E-value=0.05  Score=41.26  Aligned_cols=65  Identities=14%  Similarity=0.084  Sum_probs=40.1

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      .|+++..|.+||++|..................-..|..|+.+....  -..|.|-+|+++++++.|
T Consensus       135 SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  135 SVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             eEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            37888999999999877643322211111111111355565543221  246999999999999988

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=94.50  E-value=0.022  Score=45.22  Aligned_cols=61  Identities=18%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             ceEEcccccceeccC--CCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414           10 EAFVADFGTARLLHA--DSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus        10 ~~kl~d~g~~~~~~~--~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      -++|+|||.+.-+.-  +........++-.+.++|...+...+.+.|.|.++.+++-|+.|+.
T Consensus       839 ~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  839 GLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence            479999999876543  2223334556778999999999999999999999999999998853

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=91.32  E-value=0.14  Score=39.18  Aligned_cols=68  Identities=24%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             eeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            3 IILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         3 ill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      |+.+ ++..+..+|+....+.... ...+..+++.+++||+.....+....|.|+.+.-..++.-|.+|.
T Consensus       363 ~l~s-~~~~~~~~~~v~~~L~~~~-~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr  430 (829)
T KOG0576|consen  363 ILGS-EEEVKLLDFAVPPQLTRTM-KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPR  430 (829)
T ss_pred             cccc-ccccccccccCCcccCccc-ccccCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCC
Confidence            3433 3567888898877654332 344567899999999998888888899999998777777777664

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=90.25  E-value=0.29  Score=40.04  Aligned_cols=112  Identities=13%  Similarity=0.096  Sum_probs=66.2

Q ss_pred             CceEEc--ccccceeccCCCCccccccccccccCCcccccCCCCCC--cCeeehHHHHHHHHhcCCccccccccCCCCCc
Q 040414            9 LEAFVA--DFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK--CDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDP   84 (160)
Q Consensus         9 ~~~kl~--d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~--~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~   84 (160)
                      +.+..+  +|+.++......... ....+..+.++|.........+  .|+|.+|.....+..+...-....        
T Consensus       326 ~~~~~sl~~~~ss~~l~d~~~~~-~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~~--------  396 (1351)
T KOG1035|consen  326 GVVAISLSDFDSSKPLPDNEKSF-SDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKSA--------  396 (1351)
T ss_pred             ceeecchhhhcccccCCCcccch-hhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCccccccc--------
Confidence            334444  666665443322221 1223445777777766554443  699999999999887765521000        


Q ss_pred             hhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           85 KIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        .....+..        .+..   ...++..+|+..++++|.++.+++.|++.....
T Consensus       397 --~~~~~l~~--------~~~~---~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  397 --VPVSLLDV--------LSTS---ELLDALPKCLDEDSEERLSALELLTHPFLRFPT  441 (1351)
T ss_pred             --chhhhhcc--------ccch---hhhhhhhhhcchhhhhccchhhhhhchhccccc
Confidence              00011100        0110   124566789999999999999999999988643

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=88.82  E-value=0.31  Score=32.62  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=18.6

Q ss_pred             CceeecCCCceEEccccccee
Q 040414            1 NNIILNSNLEAFVADFGTARL   21 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~   21 (160)
                      +|||++.++.++|+|||.+..
T Consensus       171 ~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        171 HNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             hhEEEcCCCCEEEEECCCccc
Confidence            599999888999999998765

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=88.19  E-value=0.47  Score=35.73  Aligned_cols=83  Identities=20%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             CCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHHHhhhcCCCCCCC---HH-----HHHHHHHHHHHHHhhhcc
Q 040414           50 TEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD---QK-----VIQDILLASTISFACLQS  121 (160)
Q Consensus        50 ~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~l~~~cl~~  121 (160)
                      ++++|+|++|.++.++..|...+.....       ... ...+..-...+..   ..     .......+..+..+|+-.
T Consensus       109 ~pKsdVwsl~~i~~el~L~~~l~~~~~~-------s~~-l~~i~k~~~~d~~~~~~a~e~~~~~~~d~~~~~~~~~c~~~  180 (725)
T KOG1093|consen  109 GPKSDVWSLGFIILELYLGISLEAELTE-------SEY-LEILLKYYTDDQELLSTAMEHLIQLLADKKRLPLLKKCLWL  180 (725)
T ss_pred             CcchhhhhHHHHHHHHHHhhHHHHHHHH-------HHH-HHHHHHhccCchhHHHHHHHHHHHHhhhHhHHHHhccCCcc
Confidence            4689999999999999888766542111       000 0111111111100   01     111123456678899999


Q ss_pred             CCCCCCCHHHHHHHHhhhc
Q 040414          122 NPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus       122 dp~~Rps~~~~~~~~~~~~  140 (160)
                      .|..||...++..+.-+.+
T Consensus       181 ~~~ir~l~~~~~k~~i~~e  199 (725)
T KOG1093|consen  181 EPIIRPLPMELSKRCSFTE  199 (725)
T ss_pred             ccccccchhHHhcCccHHH
Confidence            9999998888777766655

>smart00090 RIO RIO-like kinase

Probab=86.20  E-value=0.46  Score=31.79  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=17.7

Q ss_pred             CceeecCCCceEEcccccceec
Q 040414            1 NNIILNSNLEAFVADFGTARLL   22 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~   22 (160)
                      +||+++ ++.++|+|||.+...
T Consensus       178 ~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      178 YNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             hhEEEE-CCCEEEEEChhhhcc
Confidence            589998 788999999987643

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=84.10  E-value=0.92  Score=33.36  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             CceeecCCCceEEcccccceecc
Q 040414            1 NNIILNSNLEAFVADFGTARLLH   23 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~   23 (160)
                      +||+++.++.++++|||++..+.
T Consensus       286 gNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       286 GNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             ccEEECCCCcEEEEeCCCeeECC
Confidence            59999999999999999987664

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK14879 serine/threonine protein kinase; Provisional

Probab=81.71  E-value=1.1  Score=29.07  Aligned_cols=20  Identities=35%  Similarity=0.673  Sum_probs=16.9

Q ss_pred             CceeecCCCceEEccccccee
Q 040414            1 NNIILNSNLEAFVADFGTARL   21 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~   21 (160)
                      +||+++ ++.++++|||.+..
T Consensus       124 ~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879        124 SNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             ccEEEE-CCCEEEEECCcccC
Confidence            489998 78899999998764

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=80.73  E-value=1.2  Score=28.59  Aligned_cols=20  Identities=30%  Similarity=0.655  Sum_probs=17.1

Q ss_pred             CceeecCCCceEEccccccee
Q 040414            1 NNIILNSNLEAFVADFGTARL   21 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~   21 (160)
                      +||+++ ++.+++.|||.++.
T Consensus       119 ~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724       119 SNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             ceEEEE-CCcEEEEECCCCcC
Confidence            489998 78899999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=80.54  E-value=0.14  Score=43.34  Aligned_cols=72  Identities=11%  Similarity=-0.011  Sum_probs=52.2

Q ss_pred             ceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            2 NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         2 nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      |.+|..+-.+++.++|+.+.........+...+++.|+.++....-.++.+.|+|..|+..|....|..+|.
T Consensus      1370 lpmIVtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~fi 1441 (2724)
T KOG1826|consen 1370 LPMIVTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYFI 1441 (2724)
T ss_pred             ccceecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHHH
Confidence            456777778899999998843333333445566777788877666666777999999999998887777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		5e-13
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		2e-12
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		4e-10
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		5e-10
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		6e-10
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		6e-10
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		6e-10
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		6e-10
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		6e-10
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		6e-10
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		7e-10
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		7e-10
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		7e-10
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-10
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		8e-10
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		8e-10
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		1e-09
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-09
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		1e-09
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		1e-09
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		2e-09
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		2e-09
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		2e-09
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		2e-09
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		2e-09
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		2e-09
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		2e-09
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-09
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		3e-09
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		3e-09
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-09
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		3e-09
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		3e-09
3daj_A	272	Crystal Structure Of Aurora A Complexed With An Inh		3e-09
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		3e-09
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		4e-09
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-09
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-09
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		6e-09
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		6e-09
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		6e-09
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		7e-09
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		1e-08
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		1e-08
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		1e-08
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		1e-08
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		1e-08
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		1e-08
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		1e-08
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		1e-08
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		1e-08
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		1e-08
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		1e-08
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		1e-08
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		1e-08
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		1e-08
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		1e-08
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		1e-08
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		1e-08
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		2e-08
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		3e-08
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		4e-08
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		7e-08
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-07
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-07
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		3e-07
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		3e-07
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-07
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		4e-07
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		5e-07
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		5e-07
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		5e-07
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		6e-07
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		7e-07
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		7e-07
3a7f_A	303	Human Mst3 Kinase Length = 303		9e-07
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-06
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-06
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		1e-06
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		1e-06
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-06
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		1e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		1e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-06
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-06
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		1e-06
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		1e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		1e-06
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		1e-06
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-06
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-06
2bfy_A	284	Complex Of Aurora-B With Incenp And Hesperidin. Len		2e-06
2bfx_B	284	Mechanism Of Aurora-B Activation By Incenp And Inhi		2e-06
2vrx_A	285	Structure Of Aurora B Kinase In Complex With Zm4474		2e-06
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		3e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		3e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		3e-06
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		3e-06
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		3e-06
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		3e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		5e-06
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		5e-06
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		6e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		7e-06
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		7e-06
4af3_A	292	Human Aurora B Kinase In Complex With Incenp And Vx		8e-06
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		8e-06
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		8e-06
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		8e-06
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		8e-06
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		9e-06
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		9e-06
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		9e-06
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		9e-06
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		9e-06
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		1e-05
3iw4_A	360	Crystal Structure Of Pkc Alpha In Complex With Nvp-		1e-05
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		2e-05
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		2e-05
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		2e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		2e-05
2i0e_A	353	Structure Of Catalytic Domain Of Human Protein Kina		2e-05
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		2e-05
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		2e-05
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		2e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		2e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-05
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		2e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		2e-05
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		2e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		3e-05
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		4e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		4e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		4e-05
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		4e-05
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		4e-05
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		4e-05
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		5e-05
4aw2_A	437	Crystal Structure Of Cdc42 Binding Protein Kinase A		5e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		5e-05
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		5e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		5e-05
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		5e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		5e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		6e-05
3vn9_A	340	Rifined Crystal Structure Of Non-Phosphorylated Map		6e-05
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		6e-05
2vd5_A	412	Structure Of Human Myotonic Dystrophy Protein Kinas		6e-05
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		6e-05
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		6e-05
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		6e-05
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		6e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		6e-05
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		6e-05
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		6e-05
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		6e-05
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		6e-05
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		6e-05
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		6e-05
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		6e-05
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		6e-05
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-05
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		6e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		6e-05
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		7e-05
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		7e-05
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		7e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		7e-05
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		7e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		7e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		7e-05
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		7e-05
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		7e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		8e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		8e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		8e-05
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		8e-05
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		8e-05
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		9e-05
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		9e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		9e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		1e-04
3qfv_A	415	Mrck Beta In Complex With Tpca-1 Length = 415		1e-04
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		1e-04
3tku_A	433	Mrck Beta In Complex With Fasudil Length = 433		1e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		1e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		2e-04
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
4g3d_A	371	Crystal Structure Of Human Nf-kappab Inducing Kinas		2e-04
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		2e-04
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		2e-04
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		2e-04
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		2e-04
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		2e-04
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		2e-04
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		2e-04
4h58_A	275	Braf In Complex With Compound 3 Length = 275		2e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		2e-04
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		2e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		2e-04
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		2e-04
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		2e-04
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		2e-04
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		2e-04
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		2e-04
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		2e-04
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		2e-04
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		2e-04
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		2e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		2e-04
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		2e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		2e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		2e-04
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		2e-04
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		2e-04
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		2e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		2e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		2e-04
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		2e-04
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		2e-04
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		2e-04
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		2e-04
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		3e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		3e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		3e-04
1vzo_A	355	The Structure Of The N-Terminal Kinase Domain Of Ms		3e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		3e-04
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		3e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		3e-04
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		3e-04
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		3e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		4e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		4e-04
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		4e-04
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		4e-04
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		4e-04
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		4e-04
4dn5_A	356	Crystal Structure Of Nf-kb-inducing Kinase (nik) Le		4e-04
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		4e-04
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		4e-04
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		4e-04
4g3f_A	336	Crystal Structure Of Murine Nf-kappab Inducing Kina		4e-04
4g3c_A	352	Crystal Structure Of Apo Murine Nf-kappab Inducing		4e-04
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		4e-04
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		4e-04
2pl0_A	289	Lck Bound To Imatinib Length = 289		4e-04
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		5e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		5e-04
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		5e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		5e-04
4g3g_A	350	Crystal Structure Of Murine Nf-kappab Inducing Kina		5e-04
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		5e-04
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		5e-04
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		5e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		5e-04
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		5e-04
3pp0_A	338	Crystal Structure Of The Kinase Domain Of Human Her		5e-04
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		6e-04
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		6e-04
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		6e-04
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		6e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		7e-04
3b2t_A	311	Structure Of Phosphotransferase Length = 311		7e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		7e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		7e-04
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		7e-04
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-04
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		7e-04
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		8e-04
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		8e-04
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		8e-04
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		8e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLL-HADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+L+   EA V DFG A+L+ + D      + GT G+IAPE   T   +EK DV+ +GV
Sbjct: 172 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGV 231
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRLPPPVD---QKVIQDILLAS 112
           + LE++ G+   D         D  +ML+D +     +++L   VD   Q   +D  +  
Sbjct: 232 MLLELITGQRAFD---LARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQ 288
Query: 113 TISFA--CLQSNPKSRPTMQYV 132
            I  A  C QS+P  RP M  V
Sbjct: 289 LIQVALLCTQSSPMERPKMSEV 310

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLL-HADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+L+   EA V DFG A+L+ + D      + G  G+IAPE   T   +EK DV+ +GV
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGV 223
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRLPPPVD---QKVIQDILLAS 112
           + LE++ G+   D         D  +ML+D +     +++L   VD   Q   +D  +  
Sbjct: 224 MLLELITGQRAFD---LARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQ 280
Query: 113 TISFA--CLQSNPKSRPTMQYV 132
            I  A  C QS+P  RP M  V
Sbjct: 281 LIQVALLCTQSSPMERPKMSEV 302

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 163 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 221 LCYEFLVGKPP 231

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV+
Sbjct: 155 NLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 212
Query: 62  TLEVLMGKHP 71
             E L+GK P
Sbjct: 213 CYEFLVGKPP 222

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 136 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 193
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 194 LCYEFLVGKPP 204

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 200 LCYEFLVGKPP 210

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L SN E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 141 ENLLLGSNGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 61  VTLEVLMGKHP 71
           +  E L+G  P
Sbjct: 199 LCYEFLVGMPP 209

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 200 LCYEFLVGKPP 210

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +   HA SS RT L+GT  Y+ PE+    +  EK D++S GV
Sbjct: 138 ENLLLGSAGELKIADFGWS--CHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 196 LCYEFLVGKPP 206

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 141 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 199 LCYEFLVGKPP 209

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 134 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 191
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 192 LCYEFLVGKPP 202

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 138 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 196 LCYEFLVGKPP 206

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 200 LCYEFLVGKPP 210

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 139 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 197 LCYEFLVGKPP 207

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +A+FG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 139 ENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 196
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 197 LCYEFLVGKPP 207

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE        EK D++S GV
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGV 199
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 200 LCYEFLVGKPP 210

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +A+FG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIANFGWS--VHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 137 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 194
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 195 LCYEFLVGKPP 205

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 142 ENLLLGSAGELKIADFGWS--VHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGV 199
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 200 LCYEFLVGKPP 210

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 138 ENLLLGSAGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 196 LCYEFLVGKPP 206

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   + +L GT  YIAPE+      + + DV+S G 
Sbjct: 144 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 203
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 204 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 249
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 250 -LQTDPTARPTINELLNDEFFTSGYIP 275

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   + +L GT  YIAPE+      + + DV+S G 
Sbjct: 168 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 227
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 228 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 273
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 274 -LQTDPTARPTINELLNDEFFTSGYIP 299

>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor Discovered Through Site-Directed Dynamic Tethering Length = 272

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L SN E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 141 ENLLLGSNGELKIADFGWS--VHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 198
Query: 61  VTLEVLMGKHP 71
           +  E L+G  P
Sbjct: 199 LCYEFLVGMPP 209

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   + +L GT  YIAPE+      + + DV+S G 
Sbjct: 170 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 229
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 230 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 275
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 276 -LQTDPTARPTINELLNDEFFTSGYIP 301

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 163 ENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 220
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 221 LCYEFLVGKPP 231

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   +  L GT  YIAPE+      + + DV+S G 
Sbjct: 146 GNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 205
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 206 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 251
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 252 -LQTDPTARPTINELLNDEFFTSGYIP 277

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   +  L GT  YIAPE+      + + DV+S G 
Sbjct: 150 GNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 209
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 210 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 255
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 256 -LQTDPTARPTINELLNDEFFTSGYIP 281

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 19/147 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +LE  + DFG A  +  D   +  L GT  YIAPE+      + + DV+S G 
Sbjct: 146 GNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGC 205
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP---PVDQKVIQDILLASTISFA 117
           +   +L+GK P +             + I   +  +P    PV   +IQ +         
Sbjct: 206 IMYTLLVGKPPFETSCLKET-----YLRIKKNEYSIPKHINPVAASLIQKM--------- 251
Query: 118 CLQSNPKSRPTM-QYVSQEFLITRKTP 143
            LQ++P +RPT+ + ++ EF  +   P
Sbjct: 252 -LQTDPTARPTINELLNDEFFTSGYIP 277

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  D+S+ T  +   G     + APE       T   DV+
Sbjct: 139 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVW 198
Query: 57  SFGVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLAS 112
           S+G+V  EV+  G+ P                +I+ ++Q  RLPPP+D    +  ++L  
Sbjct: 199 SYGIVMWEVMSYGERPYWDMTNQD--------VINAIEQDYRLPPPMDCPSALHQLML-- 248
Query: 113 TISFACLQSNPKSRP 127
                C Q +   RP
Sbjct: 249 ----DCWQKDRNHRP 259

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +  +HA SS R  L GT  Y+ PE+    +  EK D++S GV
Sbjct: 140 ENLLLGSAGELKIADFGWS--VHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 197
Query: 61  VTLEVLMGKHP 71
           +  E L+GK P
Sbjct: 198 LCYEFLVGKPP 208

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 23/135 (17%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  D+S+ T  +   G     + APE       T   DV+
Sbjct: 165 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVW 224
Query: 57  SFGVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLAS 112
           S+G+V  EV+  G+ P                +I+ ++Q  RLPPP+D    +  ++L  
Sbjct: 225 SYGIVMWEVMSYGERPYWDMTNQD--------VINAIEQDYRLPPPMDCPSALHQLML-- 274
Query: 113 TISFACLQSNPKSRP 127
                C Q +   RP
Sbjct: 275 ----DCWQKDRNHRP 285

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 369
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 370 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 415
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 416 ---QCWRKEPEERPTFEYL-QAFL 435

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+   + + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 369
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 370 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 415
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 416 ---QCWRKEPEERPTFEYL-QAFL 435

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 369
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 370 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 415
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 416 ---QCWRKEPEERPTFEYL-QAFL 435

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 135 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 194
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 195 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 240
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 241 ---QCWRKDPEERPTFEYL-QAFL 260

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 133 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 192
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 193 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 238
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 239 ---QCWRKDPEERPTFEYL-QAFL 258

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+   + + R        + APE A     T K DV+SFG+
Sbjct: 134 NILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 193
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 194 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 239
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 240 ---QCWRKEPEERPTFEYL-QAFL 259

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 144 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 204 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 249
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 250 ---QCWRKDPEERPTFEYL-QAFL 269

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+   + + R        + APE A     T K DV+SFG+
Sbjct: 141 NILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 200
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 201 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 246
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 247 ---QCWRKEPEERPTFEYL-QAFL 266

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 141 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 200
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 201 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 246
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 247 ---QCWRKEPEERPTFEYL-QAFL 266

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 137 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 196
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 197 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 242
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 243 ---QCWRKEPEERPTFEYL-QAFL 262

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG  RL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 311 NILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 370
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 371 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 416
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C + +P+ RPT +Y+ Q FL
Sbjct: 417 ---QCWRKDPEERPTFEYL-QAFL 436

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 26/144 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 393 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 452
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLP-PPVDQKVIQDILLAST 113
           +  E+   G+ P            P ++  +VLDQ     R+P PP   + + D++    
Sbjct: 453 LLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC--- 498
Query: 114 ISFACLQSNPKSRPTMQYVSQEFL 137
               C +  P+ RPT +Y+ Q FL
Sbjct: 499 ---QCWRKEPEERPTFEYL-QAFL 518

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  +SS+ T  +   G     + APE       T   D +
Sbjct: 146 NILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAFRKFTSASDAW 205
Query: 57  SFGVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLAST 113
           S+G+V  EV+  G+ P                +I+ ++Q  RLPPP D       L+   
Sbjct: 206 SYGIVMWEVMSFGERPYWDMSNQD--------VINAIEQDYRLPPPPDCPTSLHQLM--- 254
Query: 114 ISFACLQSNPKSRP 127
               C Q +  +RP
Sbjct: 255 --LDCWQKDRNARP 266

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG-----YIAPELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  +SS+ T  +   G     + APE       T   D +
Sbjct: 148 NILVNSNLVCKVSDFGLSRFLEENSSDPTETSSLGGKIPIRWTAPEAIAFRKFTSASDAW 207
Query: 57  SFGVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLAST 113
           S+G+V  EV+  G+ P                +I+ ++Q  RLPPP D       L+   
Sbjct: 208 SYGIVMWEVMSFGERPYWDMSNQD--------VINAIEQDYRLPPPPDCPTSLHQLM--- 256
Query: 114 ISFACLQSNPKSRP 127
               C Q +  +RP
Sbjct: 257 --LDCWQKDRNARP 268

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +++  + DFG A  +  D   +  L GT  YIAPE+      + + D++S G 
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGC 230
Query: 61  VTLEVLMGKHP 71
           +   +L+GK P
Sbjct: 231 ILYTLLVGKPP 241

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR 72
           + DFGTA  +    +N     G+  ++APE+      +EKCDV+S+G++  EV+  + P 
Sbjct: 147 ICDFGTACDIQTHMTNNK---GSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPF 203
Query: 73  DXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYV 132
           D          P   ++  +     PP+ + + + I    ++   C   +P  RP+M+ +
Sbjct: 204 D------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI---ESLMTRCWSKDPSQRPSMEEI 254

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +++  + DFG A  +  D   +  L GT  YIAPE+      + + D++S G 
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGC 230
Query: 61  VTLEVLMGKHP 71
           +   +L+GK P
Sbjct: 231 ILYTLLVGKPP 241

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR 72
           + DFGTA  +    +N     G+  ++APE+      +EKCDV+S+G++  EV+  + P 
Sbjct: 148 ICDFGTACDIQTHMTNNK---GSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPF 204
Query: 73  DXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYV 132
           D          P   ++  +     PP+ + + + I    ++   C   +P  RP+M+ +
Sbjct: 205 D------EIGGPAFRIMWAVHNGTRPPLIKNLPKPI---ESLMTRCWSKDPSQRPSMEEI 255

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 24/143 (16%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++ + L   +ADFG ARL+   + + R        + APE A     T K DV+SFG+
Sbjct: 135 NILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 194
Query: 61  VTLE-VLMGKHPRDXXXXXXXXXDPKIMLIDVLDQ-----RLPPPVDQKVIQDILLASTI 114
           +  E V  G+ P            P +   +VL+Q     R+P P D  +    L+    
Sbjct: 195 LLTELVTKGRVPY-----------PGMNNREVLEQVERGYRMPCPQDCPISLHELM---- 239
Query: 115 SFACLQSNPKSRPTMQYVSQEFL 137
              C + +P+ RPT +Y+ Q FL
Sbjct: 240 -IHCWKKDPEERPTFEYL-QSFL 260

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+    A ++DFG AR     A +   + + GT  Y+APE A    +T K D+YSFG
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPE-ALRGEITPKSDIYSFG 221
Query: 60  VVTLEVLMG-------KHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           VV LE++ G       + P+          D +  + D +D+++    D   ++ +    
Sbjct: 222 VVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMY--- 277
Query: 113 TISFACLQSNPKSRPTMQYVSQ 134
           +++  CL      RP ++ V Q
Sbjct: 278 SVASQCLHEKKNKRPDIKKVQQ 299

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 2   NIILNSNLEAFVADFG-TARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+ N    + DFG + +    D ++   ++ GT GYI PE      +TEK DVYSFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228
Query: 60  VVTLEVLMGK 69
           VV  EVL  +
Sbjct: 229 VVLFEVLCAR 238

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +++  + DFG A  +  D   +  L GT  YIAPE+      + + D++S G 
Sbjct: 155 GNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGC 214
Query: 61  VTLEVLMGKHP 71
           +   +L+GK P
Sbjct: 215 ILYTLLVGKPP 225

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ LN +++  + DFG A  +  D   +  L GT  YIAPE+      + + D++S G 
Sbjct: 171 GNLFLNDDMDVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGC 230
Query: 61  VTLEVLMGKHP 71
           +   +L+GK P
Sbjct: 231 ILYTLLVGKPP 241

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG AR+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+    A ++DFG AR     A +     + GT  Y+APE A    +T K D+YSFG
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFG 221
Query: 60  VVTLEVLMG-------KHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           VV LE++ G       + P+          D +  + D +D+++    D   ++ +    
Sbjct: 222 VVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMY--- 277
Query: 113 TISFACLQSNPKSRPTMQYVSQ 134
           +++  CL      RP ++ V Q
Sbjct: 278 SVASQCLHEKKNKRPDIKKVQQ 299

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+   +  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 146 NVLLSEQGDVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDFKADIWSLGIT 205
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P           D   M +  L  +  PP  +   Q          ACL  
Sbjct: 206 AIELAKGEPPNS---------DLHPMRVLFLIPKNSPPTLEG--QHSKPFKEFVEACLNK 254
Query: 122 NPKSRPTMQYVSQEFLITRKT 142
           +P+ RPT + + +   ITR T
Sbjct: 255 DPRFRPTAKELLKHKFITRYT 275

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+ N    + DFG ++       +    ++ GT GYI PE      +TEK DVYSFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228
Query: 60  VVTLEVLMGK 69
           VV  EVL  +
Sbjct: 229 VVLFEVLCAR 238

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 208
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P             K++ +  + +  PP ++    + +        ACL  
Sbjct: 209 AIELARGEPPHSELHPM------KVLFL--IPKNNPPTLEGNYSKPL---KEFVEACLNK 257
Query: 122 NPKSRPTMQYVSQEFLITR 140
            P  RPT + + +   I R
Sbjct: 258 EPSFRPTAKELLKHKFILR 276

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 148 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 207
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 208 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 254
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 255 LDCWQKDRNNRPKFEQI 271

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 148 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 207
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 208 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 254
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 255 LDCWQKDRNNRPKFEQI 271

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+    A ++DFG AR     A       + GT  Y+APE A    +T K D+YSFG
Sbjct: 157 NILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPE-ALRGEITPKSDIYSFG 215
Query: 60  VVTLEVLMG-------KHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           VV LE++ G       + P+          D +  + D +D+++    D   ++ +    
Sbjct: 216 VVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM-NDADSTSVEAMY--- 271
Query: 113 TISFACLQSNPKSRPTMQYVSQ 134
           +++  CL      RP ++ V Q
Sbjct: 272 SVASQCLHEKKNKRPDIKKVQQ 293

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 165 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 224
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 225 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 271
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 272 LDCWQKDRNNRPKFEQI 288

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 175 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 234
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 235 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 281
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 282 LDCWQKDRNNRPKFEQI 298

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 14/142 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+    A ++DFG AR     A     + + GT  Y APE A    +T K D+YSFG
Sbjct: 154 NILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPE-ALRGEITPKSDIYSFG 212
Query: 60  VVTLEVLMG-------KHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
           VV LE++ G       + P+          D +  + D +D++        V     +AS
Sbjct: 213 VVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKXNDADSTSVEAXYSVAS 272
Query: 113 TISFACLQSNPKSRPTMQYVSQ 134
                CL      RP ++ V Q
Sbjct: 273 Q----CLHEKKNKRPDIKKVQQ 290

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG  R+L  D  +  T   G     + +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +D+  RLPPP+D       L+     
Sbjct: 237 GIVLWEVMSYGERPYWEMSNQD--------VIKAVDEGYRLPPPMDCPAALYQLM----- 283
Query: 116 FACLQSNPKSRPTMQYV 132
             C Q +  +RP  + +
Sbjct: 284 LDCWQKDRNNRPKFEQI 300

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 134 NVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 193
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P             K++ +  + +  PP ++    + +        ACL  
Sbjct: 194 AIELARGEPPHSELHPM------KVLFL--IPKNNPPTLEGNYSKPL---KEFVEACLNK 242
Query: 122 NPKSRPTMQYVSQEFLITR 140
            P  RPT + + +   I R
Sbjct: 243 EPSFRPTAKELLKHKFILR 261

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + APE       T   DV+S+
Sbjct: 146 NILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSY 205
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +++  RLPPP+D  +    L+     
Sbjct: 206 GIVMWEVMSYGERPYWDMSNQD--------VIKAIEEGYRLPPPMDCPIALHQLM----- 252
Query: 116 FACLQSNPKSRP 127
             C Q     RP
Sbjct: 253 LDCWQKERSDRP 264

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGT--YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D  +  T   G     + APE       T   DV+S+
Sbjct: 140 NILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSY 199
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +++  RLPPP+D  +    L+     
Sbjct: 200 GIVMWEVMSYGERPYWDMSNQD--------VIKAIEEGYRLPPPMDCPIALHQLM----- 246
Query: 116 FACLQSNPKSRP 127
             C Q     RP
Sbjct: 247 LDCWQKERSDRP 258

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 134 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 193
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P             K++ +  + +  PP ++    + +        ACL  
Sbjct: 194 AIELARGEPPHSELHPM------KVLFL--IPKNNPPTLEGNYSKPL---KEFVEACLNK 242
Query: 122 NPKSRPTMQYVSQEFLITR 140
            P  RPT + + +   I R
Sbjct: 243 EPSFRPTAKELLKHKFILR 261

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D        G      + APE       T   DV+S+
Sbjct: 161 NILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSY 220
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +++  RLPPP+D  +    L+     
Sbjct: 221 GIVMWEVMSYGERPYWDMSNQD--------VIKAIEEGYRLPPPMDCPIALHQLM----- 267
Query: 116 FACLQSNPKSRP 127
             C Q     RP
Sbjct: 268 LDCWQKERSDRP 279

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 154 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 213
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
            +E+  G+ P             K++ +  + +  PP ++    + +        ACL  
Sbjct: 214 AIELARGEPPHSELHPM------KVLFL--IPKNNPPTLEGNYSKPL---KEFVEACLNK 262
Query: 122 NPKSRPTMQYVSQEFLITR 140
            P  RPT + + +   I R
Sbjct: 263 EPSFRPTAKELLKHKFILR 281

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 31/142 (21%)
Query: 6   NSNLEAFVADFGTARL-LHADSSNRTLLAGTYGYIAPEL--AYTMVMTEKCDVYSFGVVT 62
           N+ + A VADFGT++  +H+ S     L G + ++APE   A     TEK D YSF ++ 
Sbjct: 163 NAPVCAKVADFGTSQQSVHSVSG----LLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218
Query: 63  LEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQR-----LP---PPVDQKVIQDILLASTI 114
             +L G+ P D           KI  I+++ +      +P   PP  + VI+        
Sbjct: 219 YTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPEDCPPRLRNVIE-------- 264
Query: 115 SFACLQSNPKSRPTMQYVSQEF 136
              C   +PK RP   Y+ +E 
Sbjct: 265 --LCWSGDPKKRPHFSYIVKEL 284

>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin. Length = 284

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+++    E  +ADFG +  +HA S  R  + GT  Y+ PE+       EK D++  GV
Sbjct: 143 ENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGV 200
Query: 61  VTLEVLMGKHPRD 73
           +  E L+G  P D
Sbjct: 201 LCYEFLVGMPPFD 213

>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439 Length = 285

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+++    E  +ADFG +  +HA S  R  + GT  Y+ PE+       EK D++  GV
Sbjct: 144 ENLLMGYKGELKIADFGWS--VHAPSLRRRXMCGTLDYLPPEMIEGKTHDEKVDLWCAGV 201
Query: 61  VTLEVLMGKHPRD 73
           +  E L+G  P D
Sbjct: 202 LCYEFLVGMPPFD 214

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++++L   +ADFG AR++  +  + R        + APE       T K DV+SFG+
Sbjct: 141 NILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGI 200
Query: 61  VTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           + +E++  G+ P           +P+++       R+P P  +   +++     I   C 
Sbjct: 201 LLMEIVTYGRIP------YPGMSNPEVIRALERGYRMPRP--ENCPEELY---NIMMRCW 249
Query: 120 QSNPKSRPTMQYV 132
           ++ P+ RPT +Y+
Sbjct: 250 KNRPEERPTFEYI 262

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++++L   +ADFG AR++  +  + R        + APE       T K DV+SFG+
Sbjct: 314 NILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGI 373
Query: 61  VTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           + +E++  G+ P           +P+++       R+P P  +   +++     I   C 
Sbjct: 374 LLMEIVTYGRIP------YPGMSNPEVIRALERGYRMPRP--ENCPEELY---NIMMRCW 422
Query: 120 QSNPKSRPTMQYV 132
           ++ P+ RPT +Y+
Sbjct: 423 KNRPEERPTFEYI 435

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 21/146 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+   +  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 150 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGIT 209
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF----- 116
            +E+  G+ P           D   M +  L  +  PP    ++ D     T SF     
Sbjct: 210 AIELAKGEPPN---------SDMHPMRVLFLIPKNNPPT---LVGDF----TKSFKEFID 253
Query: 117 ACLQSNPKSRPTMQYVSQEFLITRKT 142
           ACL  +P  RPT + + +   I + +
Sbjct: 254 ACLNKDPSFRPTAKELLKHKFIVKNS 279

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+LN+   A +ADFG A  L    + R  + GT  ++APE+   +      D++S G+
Sbjct: 154 GNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGI 213
Query: 61  VTLEVLMGKHP 71
             +E+  GK P
Sbjct: 214 TAIEMAEGKPP 224

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           + DFG AR  H   + +   AG Y ++APE+    + ++  DV+S+GV+  E+L G+ P
Sbjct: 157 ITDFGLAREWH--RTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP 213

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 16/142 (11%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L  + +N     GT  Y++PE       + + D++S G+
Sbjct: 137 SNILVNSRGEIKLCDFGVSGQLIDEMANE--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 194
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFAC 118
             +E+ +G++PR           P + + ++LD  +  PPP     +  +     ++  C
Sbjct: 195 SLVEMAVGRYPR-----------PPMAIFELLDYIVNEPPPKLPSAVFSLEFQDFVN-KC 242
Query: 119 LQSNPKSRPTMQYVSQEFLITR 140
           L  NP  R  ++ +     I R
Sbjct: 243 LIKNPAERADLKQLMVHAFIKR 264

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++SN    + DFG A+ L   S  +T  + GT  Y +PE A      E  D+YS G+
Sbjct: 141 NILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGI 200
Query: 61  VTLEVLMGKHP 71
           V  E+L+G+ P
Sbjct: 201 VLYEMLVGEPP 211

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D       +G      + APE       T   DV+SF
Sbjct: 177 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 236
Query: 59  GVVTLEVL-MGKHP 71
           G+V  EV+  G+ P
Sbjct: 237 GIVMWEVMTYGERP 250

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 146 NILISATNAVKVVDFGIARAI-ADSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L+ +    +ADFG  +      +      GT  YIAPE+          D +SFGV
Sbjct: 147 DNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSFGV 206
Query: 61  VTLEVLMGKHP 71
           +  E+L+G+ P
Sbjct: 207 LLYEMLIGQSP 217

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 31/142 (21%)
Query: 6   NSNLEAFVADFG-TARLLHADSSNRTLLAGTYGYIAPEL--AYTMVMTEKCDVYSFGVVT 62
           N+ + A VADFG + + +H+ S     L G + ++APE   A     TEK D YSF ++ 
Sbjct: 163 NAPVCAKVADFGLSQQSVHSVSG----LLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218
Query: 63  LEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQR-----LP---PPVDQKVIQDILLASTI 114
             +L G+ P D           KI  I+++ +      +P   PP  + VI+        
Sbjct: 219 YTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPEDCPPRLRNVIE-------- 264
Query: 115 SFACLQSNPKSRPTMQYVSQEF 136
              C   +PK RP   Y+ +E 
Sbjct: 265 --LCWSGDPKKRPHFSYIVKEL 284

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L  N+   +ADFG A  L         L GT  YI+PE+A       + DV+S G 
Sbjct: 141 SNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGC 200
Query: 61  VTLEVLMGKHPRD 73
           +   +L+G+ P D
Sbjct: 201 MFYTLLIGRPPFD 213

>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680 Length = 292

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           +ADFG +  +HA S  R  + GT  Y+ PE+    +  EK D++  GV+  E+L+G  P
Sbjct: 164 IADFGWS--VHAPSLRRKTMCGTLDYLPPEMIEGRMHNEKVDLWCIGVLCYELLVGNPP 220

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 146 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 204
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 205 LGCVLYEVLTGEPP 218

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS-----SNRTLLAGTYGYIAPELAYTMVMTE-KCD 54
            NI+L  +    +ADFG +  L           R    GT  ++APE+   +   + K D
Sbjct: 150 GNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKAD 209
Query: 55  VYSFGVVTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVI-QDILLAST 113
           ++SFG+  +E+  G  P            P + ++ +  Q  PP ++  V  +++L    
Sbjct: 210 IWSFGITAIELATGAAPYHKY--------PPMKVLMLTLQNDPPSLETGVQDKEMLKKYG 261
Query: 114 ISFA-----CLQSNPKSRPT 128
            SF      CLQ +P+ RPT
Sbjct: 262 KSFRKMISLCLQKDPEKRPT 281

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L+ +    +ADFG  +      +      GT  YIAPE+          D +SFGV
Sbjct: 148 DNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSFGV 207
Query: 61  VTLEVLMGKHP 71
           +  E+L+G+ P
Sbjct: 208 LLYEMLIGQSP 218

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L+      + DFG AR+L+ D+S      GT  Y++PE    M   EK D++S G +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205
Query: 62  TLEV 65
             E+
Sbjct: 206 LYEL 209

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 20/140 (14%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS-----SNRTLLAGTYGYIAPELAYTMVMTE-KCD 54
            NI+L  +    +ADFG +  L           R    GT  ++APE+   +   + K D
Sbjct: 145 GNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKAD 204
Query: 55  VYSFGVVTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVI-QDILLAST 113
           ++SFG+  +E+  G  P            P + ++ +  Q  PP ++  V  +++L    
Sbjct: 205 IWSFGITAIELATGAAPYHKY--------PPMKVLMLTLQNDPPSLETGVQDKEMLKKYG 256
Query: 114 ISFA-----CLQSNPKSRPT 128
            SF      CLQ +P+ RPT
Sbjct: 257 KSFRKMISLCLQKDPEKRPT 276

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L+      + DFG AR+L+ D+S      GT  Y++PE    M   EK D++S G +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205
Query: 62  TLEV 65
             E+
Sbjct: 206 LYEL 209

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR----TLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI++++     V DFG AR + ADS N       + GT  Y++PE A    +  + DVYS
Sbjct: 163 NIMISATNAVKVMDFGIARAI-ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYS 221
Query: 58  FGVVTLEVLMGKHP 71
            G V  EVL G+ P
Sbjct: 222 LGCVLYEVLTGEPP 235

>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With Nvp-Aeb071 Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     +ADFG  +    D        GT  YIAPE+       +  D +++GV
Sbjct: 149 DNVMLDSEGHIKIADFGMCKEHMMDGVTTREFCGTPDYIAPEIIAYQPYGKSVDWWAYGV 208
Query: 61  VTLEVLMGKHPRD 73
           +  E+L G+ P D
Sbjct: 209 LLYEMLAGQPPFD 221

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 205 MAIEMIEGEPP 215

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++++      V DFG +RL  +        AGT  ++APE+       EK DVYSFGV+
Sbjct: 169 NLLVDKKYTVKVCDFGLSRLKASXFLXSKXAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228
Query: 62  TLEVLMGKHP 71
             E+   + P
Sbjct: 229 LWELATLQQP 238

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 205
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 206 MAIEMIEGEPP 216

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 20/148 (13%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ S     + DFG ARLL  D        G     ++A E  +    T + DV+S+G
Sbjct: 147 NVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYG 206
Query: 60  VVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTIS 115
           V   E++  G  P D          P   + D+L+  +RLP PP+      D+ +   + 
Sbjct: 207 VTIWELMTFGGKPYDGI--------PTREIPDLLEKGERLPQPPI---CTIDVYM---VM 252
Query: 116 FACLQSNPKSRPTMQYVSQEFLITRKTP 143
             C   +  SRP  + ++ EF    + P
Sbjct: 253 VKCWMIDADSRPKFKELAAEFSRMARDP 280

>pdb|2I0E|A Chain A, Structure Of Catalytic Domain Of Human Protein Kinase C Beta Ii Complexed With A Bisindolylmaleimide Inhibitor Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     +ADFG  +    D        GT  YIAPE+       +  D ++FGV
Sbjct: 150 DNVMLDSEGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGV 209
Query: 61  VTLEVLMGKHP 71
           +  E+L G+ P
Sbjct: 210 LLYEMLAGQAP 220

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++++      V DFG +RL  +   +    AGT  ++APE+       EK DVYSFGV+
Sbjct: 169 NLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228
Query: 62  TLEVLMGKHP 71
             E+   + P
Sbjct: 229 LWELATLQQP 238

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 205 MAIEMIEGEPP 215

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 146 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 205
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 206 MAIEMIEGEPP 216

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 24/161 (14%)
Query: 1   NNIILNSNLEAFVADFGTARLL--------------HADSSNRTLLAGTYGYIAPELAYT 46
           +N ++  N    VADFG ARL+                D   R  + G   ++APE+   
Sbjct: 137 HNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMING 196
Query: 47  MVMTEKCDVYSFGVVTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQ 106
               EK DV+SFG+V  E++ G+   D         D  + +   LD+  PP        
Sbjct: 197 RSYDEKVDVFSFGIVLCEII-GRVNAD-PDYLPRTMDFGLNVRGFLDRYCPPNCPPSFF- 253
Query: 107 DILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH 147
                  I+  C   +P+ RP+   + + +L T +  L  H
Sbjct: 254 ------PITVRCCDLDPEKRPSFVKL-EHWLETLRMHLAGH 287

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 20/141 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++ S     + DFG ARLL  D        G     ++A E  +    T + DV+S+G
Sbjct: 170 NVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYG 229
Query: 60  VVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTIS 115
           V   E++  G  P D          P   + D+L+  +RLP PP+      D+ +   + 
Sbjct: 230 VTIWELMTFGGKPYDGI--------PTREIPDLLEKGERLPQPPI---CTIDVYM---VM 275
Query: 116 FACLQSNPKSRPTMQYVSQEF 136
             C   +  SRP  + ++ EF
Sbjct: 276 VKCWMIDADSRPKFKELAAEF 296

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 33/66 (50%)
Query: 6   NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEV 65
           N NLE  + DFG ARL   D+        T  Y APEL       E CD++S GV+   +
Sbjct: 143 NDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTM 202
Query: 66  LMGKHP 71
           L G+ P
Sbjct: 203 LSGQVP 208

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 56/132 (42%), Gaps = 19/132 (14%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D        G      + APE       T   DV+S+
Sbjct: 154 NILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSASDVWSY 213
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTIS 115
           G+V  EV+  G+ P                +I  +++  RLP P+D       L+     
Sbjct: 214 GIVMWEVVSYGERPYWEMTNQD--------VIKAVEEGYRLPSPMDCPAALYQLM----- 260
Query: 116 FACLQSNPKSRP 127
             C Q    SRP
Sbjct: 261 LDCWQKERNSRP 272

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G+
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 205 MAIEMIEGEPP 215

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPELAYTMVMTEKCDVYS 57
            N++++SNL   V+DFG +R+L  D        G      + APE       +   DV+S
Sbjct: 180 RNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWS 239
Query: 58  FGVVTLEVL-MGKHP 71
           FGVV  EVL  G+ P
Sbjct: 240 FGVVMWEVLAYGERP 254

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+ N    + DFG A+ +  D +    L GT  YIAPE+  T    +  D +SFG++
Sbjct: 136 NILLDKNGHIKITDFGFAKYV-PDVT--YXLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 192
Query: 62  TLEVLMGKHP 71
             E+L G  P
Sbjct: 193 IYEMLAGYTP 202

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPELAYTMVMTEKCDVYS 57
            N++++SNL   V+DFG +R+L  D        G      + APE       +   DV+S
Sbjct: 180 RNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWS 239
Query: 58  FGVVTLEVL-MGKHP 71
           FGVV  EVL  G+ P
Sbjct: 240 FGVVMWEVLAYGERP 254

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYS 57
            N +++ +L   V+DFG  R +  D    ++  GT     + APE+ +    + K DV++
Sbjct: 133 RNCLVDRDLCVKVSDFGMTRYVLDDQYVSSV--GTKFPVKWSAPEVFHYFKYSSKSDVWA 190
Query: 58  FGVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF 116
           FG++  EV  +GK P D         + +++L      RL  P    +  D +    I +
Sbjct: 191 FGILMWEVFSLGKMPYD------LYTNSEVVLKVSQGHRLYRP---HLASDTIY--QIMY 239
Query: 117 ACLQSNPKSRPTMQ 130
           +C    P+ RPT Q
Sbjct: 240 SCWHELPEKRPTFQ 253

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L  +    + DFG AR+L++         GT  Y++PE+        K D+++ G V
Sbjct: 155 NIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCV 214
Query: 62  TLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E+   KH  +           K +++ ++     PPV      D  L S +S    + 
Sbjct: 215 LYELCTLKHAFEAGSM-------KNLVLKIISGSF-PPVSLHYSYD--LRSLVS-QLFKR 263
Query: 122 NPKSRPTMQYVSQEFLITRK 141
           NP+ RP++  + ++  I ++
Sbjct: 264 NPRDRPSVNSILEKGFIAKR 283

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 139 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 198
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 199 GCIIYQLVAGLPP 211

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 138 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 197
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 198 GCIIYQLVAGLPP 210

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 195
Query: 58  FGVVTLEVL---MGKHPRDXXXXXXXXXDP-KIMLIDVLDQRL--PPPVDQKVIQDILLA 111
           FGV+  E+    M  +P           DP ++  +   D R+  P    +KV +     
Sbjct: 196 FGVLLWEIATYGMSPYP---------GIDPSQVYELLEKDYRMERPEGCPEKVYE----- 241
Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
             +  AC Q NP  RP+   + Q F
Sbjct: 242 --LMRACWQWNPSDRPSFAEIHQAF 264

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 195
Query: 58  FGVVTLEVL---MGKHPRDXXXXXXXXXDP-KIMLIDVLDQRL--PPPVDQKVIQDILLA 111
           FGV+  E+    M  +P           DP ++  +   D R+  P    +KV +     
Sbjct: 196 FGVLLWEIATYGMSPYP---------GIDPSQVYELLEKDYRMERPEGCPEKVYE----- 241
Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
             +  AC Q NP  RP+   + Q F
Sbjct: 242 --LMRACWQWNPSDRPSFAEIHQAF 264

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 137 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 196
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 197 GCIIYQLVAGLPP 209

>pdb|4AW2|A Chain A, Crystal Structure Of Cdc42 Binding Protein Kinase Alpha (Mrck Alpha) Length = 437

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTE-----KCD 54
           +NI+++ N    +ADFG+   L  D + ++ +A GT  YI+PE+   M   +     +CD
Sbjct: 204 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECD 263
Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 264 WWSLGVCMYEMLYGETP 280

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 31/142 (21%)
Query: 6   NSNLEAFVADFG-TARLLHADSSNRTLLAGTYGYIAPEL--AYTMVMTEKCDVYSFGVVT 62
           N+ + A VADF  + + +H+ S     L G + ++APE   A     TEK D YSF ++ 
Sbjct: 163 NAPVCAKVADFSLSQQSVHSVSG----LLGNFQWMAPETIGAEEESYTEKADTYSFAMIL 218
Query: 63  LEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQR-----LP---PPVDQKVIQDILLASTI 114
             +L G+ P D           KI  I+++ +      +P   PP  + VI+        
Sbjct: 219 YTILTGEGPFDEYSYG------KIKFINMIREEGLRPTIPEDCPPRLRNVIE-------- 264
Query: 115 SFACLQSNPKSRPTMQYVSQEF 136
              C   +PK RP   Y+ +E 
Sbjct: 265 --LCWSGDPKKRPHFSYIVKEL 284

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L+      + DFG AR+L+ D        GT  Y++PE    M   EK D++S G +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205
Query: 62  TLEV 65
             E+
Sbjct: 206 LYEL 209

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 142 NCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 198
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 199 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 244
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 245 ----LMRACWQWNPSDRPSFAEIHQAF 267

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 136 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 195
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 196 GCIIYQLVAGLPP 208

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGDTX--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 202
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 203 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 248
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 249 ----LMRACWQWNPSDRPSFAEIHQAF 271

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL      ++  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In A Putative Auto-Inhibition State Length = 340

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 26/149 (17%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL--------AYTMVMTEK 52
           +N+++N+  +  + DFG +  L  DS  +T+ AG   Y+APE          Y++    K
Sbjct: 183 SNVLINALGQVKMCDFGISGYL-VDSVAKTIDAGCKPYMAPERINPELNQKGYSV----K 237
Query: 53  CDVYSFGVVTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLAS 112
            D++S G+  +E+ + + P D          P   L  V+++  P     ++  D   A 
Sbjct: 238 SDIWSLGITMIELAILRFPYDSWGT------PFQQLKQVVEEPSP-----QLPADKFSAE 286
Query: 113 TISFA--CLQSNPKSRPTMQYVSQEFLIT 139
            + F   CL+ N K RPT   + Q    T
Sbjct: 287 FVDFTSQCLKKNSKERPTYPELMQHPFFT 315

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R++  D        G      + APE       T   DV+S+
Sbjct: 175 NILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSY 234
Query: 59  GVVTLEVL-MGKHP 71
           G+V  EV+  G+ P
Sbjct: 235 GIVMWEVMSYGERP 248

>pdb|2VD5|A Chain A, Structure Of Human Myotonic Dystrophy Protein Kinase In Complex With The Bisindoylmaleide Inhibitor Bim Viii Length = 412

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTE-------K 52
           +NI+L+      +ADFG+   L AD + R+L+A GT  Y++PE+   +           +
Sbjct: 191 DNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPE 250
Query: 53  CDVYSFGVVTLEVLMGKHP 71
           CD ++ GV   E+  G+ P
Sbjct: 251 CDWWALGVFAYEMFYGQTP 269

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 166 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 225
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 226 GCIIYQLVAGLPP 238

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 202
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 203 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 248
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 249 ----LMRACWQWNPSDRPSFAEIHQAF 271

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 202
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 203 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 248
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 249 ----LMRACWQWNPSDRPSFAEIHQAF 271

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 218
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 219 GCIIYQLVAGLPP 231

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 199
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 200 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 245
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 246 ----LMRACWQWNPSDRPSFAEIHQAF 268

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 154 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 210
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 211 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 256
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 257 ----LMRACWQWNPSDRPSFAEIHQAF 279

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 162 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 221
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 222 GCIIYQLVAGLPP 234

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 218
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 219 GCIIYQLVAGLPP 231

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 218
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 219 GCIIYQLVAGLPP 231

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 199
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 200 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 245
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 246 ----LMRACWQWNPSDRPSFAEIHQAF 268

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 143 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 202
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 203 GCIIYQLVAGLPP 215

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 164 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 223
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 224 GCIIYQLVAGLPP 236

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 197
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 198 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 243
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 244 ----LMRACWQWNPSDRPSFAEIHQAF 266

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 29/145 (20%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 139 NCLVGENHLVKVADFGLSRLMTGDTF--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 195
Query: 58  FGVVTLEVL---MGKHPRDXXXXXXXXXDP-KIMLIDVLDQRL--PPPVDQKVIQDILLA 111
           FGV+  E+    M  +P           DP ++  +   D R+  P    +KV +     
Sbjct: 196 FGVLLWEIATYGMSPYP---------GIDPSQVYELLEKDYRMERPEGCPEKVYE----- 241
Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
             +  AC Q NP  RP+   + Q F
Sbjct: 242 --LMRACWQWNPSDRPSFAEIHQAF 264

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 159 ENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWAL 218
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 219 GCIIYQLVAGLPP 231

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWAL 220
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 221 GCIIYQLVAGLPP 233

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 202
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 203 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 248
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 249 ----LMRACWQWNPSDRPSFAEIHQAF 271

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 145 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 201
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 202 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 247
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 248 ----LMRACWQWNPSDRPSFAEIHQAF 270

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 146 NCLVGENHLVKVADFGLSRLMTGDTY--TAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 202
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 203 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 248
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 249 ----LMRACWQWNPSDRPSFAEIHQAF 271

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 158 ENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWAL 217
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 218 GCIIYQLVAGLPP 230

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  A+ + R        + APE       T K DV+SFG+
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 199 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 245
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 246 CWKERPEDRPTFDYL 260

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 142 NCLVGENHLVKVADFGLSRLMTGDTY--TAPAGAKFPIKWTAPESLAYNK-FSIKSDVWA 198
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 199 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 244
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 245 ----LMRACWQWNPSDRPSFAEIHQAF 267

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 162 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWAL 221
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 222 GCIIYQLVAGLPP 234

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY---GYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 143 NCLVGENHLVKVADFGLSRLMTGDTY--TAPAGAKFPIKWTAPESLAYNK-FSIKSDVWA 199
Query: 58  FGVVTLEV-LMGKHPRDXXXXXXXXXDPKIMLIDVL-----DQRL--PPPVDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 200 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 245
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 246 ----LMRACWQWNPSDRPSFAEIHQAF 268

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 25/134 (18%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           NI+++++L   +ADFG AR+              +   + APE       T K DV+SFG
Sbjct: 308 NILVSASLVCKIADFGLARV-----------GAKFPIKWTAPEAINFGSFTIKSDVWSFG 356
Query: 60  VVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           ++ +E++  G+ P           +P+++       R+P P  +   +++     I   C
Sbjct: 357 ILLMEIVTYGRIP------YPGMSNPEVIRALERGYRMPRP--ENCPEELY---NIMMRC 405
Query: 119 LQSNPKSRPTMQYV 132
            ++ P+ RPT +Y+
Sbjct: 406 WKNRPEERPTFEYI 419

>pdb|3QFV|A Chain A, Mrck Beta In Complex With Tpca-1 Length = 415

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTM-----VMTEKCD 54
           +N++L+ N    +ADFG+   ++ D + ++ +A GT  YI+PE+   M         +CD
Sbjct: 204 DNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECD 263
Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 264 WWSLGVCMYEMLYGETP 280

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+S     +ADFG  +    D        GT  YIAPE+       +  D ++FGV
Sbjct: 471 DNVMLDSEGHIKIADFGMCKENIWDGVTTKXFCGTPDYIAPEIIAYQPYGKSVDWWAFGV 530
Query: 61  VTLEVLMGKHP 71
           +  E+L G+ P
Sbjct: 531 LLYEMLAGQAP 541

>pdb|3TKU|A Chain A, Mrck Beta In Complex With Fasudil Length = 433

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTM-----VMTEKCD 54
           +N++L+ N    +ADFG+   ++ D + ++ +A GT  YI+PE+   M         +CD
Sbjct: 220 DNVLLDVNGHIRLADFGSCLKMNDDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECD 279
Query: 55  VYSFGVVTLEVLMGKHP 71
            +S GV   E+L G+ P
Sbjct: 280 WWSLGVCMYEMLYGETP 296

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+LN ++   + DFGTA++L  +S  +      GT  Y++PEL       +  D+++ 
Sbjct: 158 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWAL 217
Query: 59  GVVTLEVLMGKHP 71
           G +  +++ G  P
Sbjct: 218 GCIIYQLVAGLPP 230

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 276 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 335
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 336 MVIEMVDGEPP 346

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L S+    ++DFG    +  +   R  L GT  ++APE+   +    + D++S G+
Sbjct: 170 DSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGI 229
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           + +E++ G+ P           +P +  +  +   LPP V     +D+   S++    L 
Sbjct: 230 MVIEMIDGEPP--------YFNEPPLQAMRRIRDSLPPRV-----KDLHKVSSVLRGFLD 276
Query: 121 SNPKSRPTMQYVSQEFL 137
                 P+ +  +QE L
Sbjct: 277 LMLVREPSQRATAQELL 293

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik) Length = 371

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1   NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTY-----GYIAPELAYTMVMTEKCD 54
           +N++L+S+   A + DFG A  L  D   ++LL G Y      ++APE+        K D
Sbjct: 214 DNVLLSSDGSHAALCDFGHAVCLQPDGLGKSLLTGDYIPGTETHMAPEVVLGRSCDAKVD 273
Query: 55  VYSFGVVTLEVLMGKHP 71
           V+S   + L +L G HP
Sbjct: 274 VWSSCCMMLHMLNGCHP 290

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 133 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 192
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 193 GIVLTAMLAGELPWD 207

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 160 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 216
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 217 SDVYAFGIVLYELMTGQLP 235

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N++L+      +ADFG  +    +        GT  YIAPE+   M+     D ++ GV
Sbjct: 153 DNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGV 212
Query: 61  VTLEVLMGKHP 71
           +  E+L G  P
Sbjct: 213 LLYEMLCGHAP 223

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 138 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 194
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 195 SDVYAFGIVLYELMTGQLP 213

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 189
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 135 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 191
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 192 SDVYAFGIVLYELMTGQLP 210

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 189
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 153 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 210
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
             +E+ +G++P           +    L+D +    PP +   V    L        CL 
Sbjct: 211 SLVEMAVGRYPIGSGSGSMAIFE----LLDYIVNEPPPKLPSGVFS--LEFQDFVNKCLI 264
Query: 121 SNPKSRPTMQYVSQEFLITR 140
            NP  R  ++ +     I R
Sbjct: 265 KNPAERADLKQLMVHAFIKR 284

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFG--TARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG  T +   + S     L+G+  ++APE+   + M +K      
Sbjct: 153 NNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 209
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 210 SDVYAFGIVLYELMTGQLP 228

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 154 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 213
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 214 MVIEMVDGEPP 224

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 161 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 217
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 218 SDVYAFGIVLYELMTGQLP 236

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+   + M +K      
Sbjct: 138 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 194
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 195 SDVYAFGIVLYELMTGQLP 213

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFG--TARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG  T +   + S     L+G+  ++APE+   + M +K      
Sbjct: 133 NNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 189
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 190 SDVYAFGIVLYELMTGQLP 208

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 1   NNIILNSNLEAFVADFG--TARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK------ 52
           NNI L+ +L   + DFG  T +   + S     L+G+  ++APE+   + M +K      
Sbjct: 161 NNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV---IRMQDKNPYSFQ 217
Query: 53  CDVYSFGVVTLEVLMGKHP 71
            DVY+FG+V  E++ G+ P
Sbjct: 218 SDVYAFGIVLYELMTGQLP 236

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 199 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 258
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 259 MVIEMVDGEPP 269

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 156 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 215
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 216 MVIEMVDGEPP 226

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP 71
           + DFG A L  +D  + T  AGT  Y+APE+ +   +T KCD++S GVV   +L G  P
Sbjct: 168 IIDFGLAELFKSDE-HSTNAAGTALYMAPEV-FKRDVTFKCDIWSAGVVMYFLLTGCLP 224

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 134 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 191
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIM--LIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
             +E+ +G++P            P  +  L+D +    PP +   V    L        C
Sbjct: 192 SLVEMAVGRYPIPPPDAKEDSRPPMAIFELLDYIVNEPPPKLPSGVFS--LEFQDFVNKC 249
Query: 119 LQSNPKSRPTMQYVSQEFLITR 140
           L  NP  R  ++ +     I R
Sbjct: 250 LIKNPAERADLKQLMVHAFIKR 271

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 134 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSC 193
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 194 GIVLTAMLAGELPWD 208

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPEL-AYTMVMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKRREFHAEPVDVWSC 194
Query: 59  GVVTLEVLMGKHPRD 73
           G+V   +L G+ P D
Sbjct: 195 GIVLTAMLAGELPWD 209

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 180 NVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 239
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 240 VLLWEIFTLGGSP 252

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 145 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 204
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 205 MVIEMVDGEPP 215

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 2   NIIL---NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI+L   NS L   + DFG +     D   R  L GT  YIAPE+       EKCDV+S 
Sbjct: 176 NILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRL-GTAYYIAPEVLKKK-YNEKCDVWSC 233
Query: 59  GVVTLEVLMGKHP 71
           GV+   +L G  P
Sbjct: 234 GVIMYILLCGYPP 246

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  D   R  L GT  ++APE+    +   + D++S G+
Sbjct: 170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGI 229
Query: 61  VTLEVLMGKHP 71
           + +E++ G+ P
Sbjct: 230 MVIEMVDGEPP 240

>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1 Reveals A Novel Autoinhibitory Conformation For A Dual Kinase Protein Length = 355

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPEL--AYTMVMTEKCDVYS 57
            NI+L+SN    + DFG ++   AD + R     GT  Y+AP++         +  D +S
Sbjct: 188 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWS 247
Query: 58  FGVVTLEVLMGKHP 71
            GV+  E+L G  P
Sbjct: 248 LGVLMYELLTGASP 261

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+L+      + DFG ++             GT  Y+APE+      T+  D +SFGV
Sbjct: 155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 214
Query: 61  VTLEVLMGKHP 71
           +  E+L G  P
Sbjct: 215 LMFEMLTGTLP 225

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG 68
           V DFG+A     D  + + L  T  Y APE+   +  ++ CDV+S G + +E  +G
Sbjct: 178 VVDFGSATY---DDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLG 230

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           ++I+L  +    ++DFG    +  +   R  L GT  ++APEL   +    + D++S G+
Sbjct: 149 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGI 208
Query: 61  VTLEVLMGKHPRDXXXXXXXXXDPKIMLIDVLDQRLPP 98
           + +E++ G+ P           +P +  + ++   LPP
Sbjct: 209 MVIEMVDGEPP--------YFNEPPLKAMKMIRDNLPP 238

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y+APE       + + D++S G+
Sbjct: 144 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMAPERLQGTHYSVQSDIWSMGL 201
Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 202 SLVELAVGRYP 212

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+L+      + DFG ++             GT  Y+APE+      T+  D +SFGV
Sbjct: 156 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 215
Query: 61  VTLEVLMGKHP 71
           +  E+L G  P
Sbjct: 216 LMFEMLTGTLP 226

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+L+      + DFG ++             GT  Y+APE+      T+  D +SFGV
Sbjct: 155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 214
Query: 61  VTLEVLMGKHP 71
           +  E+L G  P
Sbjct: 215 LMFEMLTGTLP 225

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 145 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 204
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 205 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 251
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 252 CWKERPEDRPTFDYL 266

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 144 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 203
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 204 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 250
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 251 CWKERPEDRPTFDYL 265

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 148 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 207
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 208 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 254
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 255 CWKERPEDRPTFDYL 269

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 147 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 206
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 207 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 253
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 254 CWKERPEDRPTFDYL 268

>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik) Length = 356

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 1   NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTY-----GYIAPELAYTMVMTEKCD 54
           +N++L+S+   A + DFG A  L  D   + LL G Y      ++APE+        K D
Sbjct: 195 DNVLLSSDGSHAALCDFGHAVCLQPDGLGKDLLTGDYIPGTETHMAPEVVLGRSCDAKVD 254
Query: 55  VYSFGVVTLEVLMGKHP 71
           V+S   + L +L G HP
Sbjct: 255 VWSSCCMMLHMLNGCHP 271

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 141 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 200
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 201 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 247
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 248 CWKERPEDRPTFDYL 262

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 145 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 204
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 205 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 251
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 252 CWKERPEDRPTFDYL 266

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 199 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 245
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 246 CWKERPEDRPTFDYL 260

>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) Bound To A 2-(aminothiazoly)phenol (cmp2) Length = 336

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1   NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTY-----GYIAPELAYTMVMTEKCD 54
           +N++L+S+   A + DFG A  L  D   ++LL G Y      ++APE+        K D
Sbjct: 179 DNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVD 238
Query: 55  VYSFGVVTLEVLMGKHP 71
           ++S   + L +L G HP
Sbjct: 239 IWSSCCMMLHMLNGCHP 255

>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase (nik) Length = 352

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1   NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTY-----GYIAPELAYTMVMTEKCD 54
           +N++L+S+   A + DFG A  L  D   ++LL G Y      ++APE+        K D
Sbjct: 195 DNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVD 254
Query: 55  VYSFGVVTLEVLMGKHP 71
           ++S   + L +L G HP
Sbjct: 255 IWSSCCMMLHMLNGCHP 271

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 199 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 245
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 246 CWKERPEDRPTFDYL 260

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLH-ADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+   + + R        + APE       T K DV+SFG+
Sbjct: 140 NILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 199
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 200 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 246
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 247 CWKERPEDRPTFDYL 261

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 149 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 208
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 209 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 255
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 256 CWKERPEDRPTFDYL 270

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 199 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 245
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 246 CWKERPEDRPTFDYL 260

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 165 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 224
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 225 VLLWEIFTLGGSP 237

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 134 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 193
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 194 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 240
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 241 CWKERPEDRPTFDYL 255

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 169 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 228
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 229 VLLWEIFTLGGSP 241

>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase (nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3) Length = 350

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 1   NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTY-----GYIAPELAYTMVMTEKCD 54
           +N++L+S+   A + DFG A  L  D   ++LL G Y      ++APE+        K D
Sbjct: 193 DNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVD 252
Query: 55  VYSFGVVTLEVLMGKHP 71
           ++S   + L +L G HP
Sbjct: 253 IWSSCCMMLHMLNGCHP 269

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 17/135 (12%)
Query: 2   NIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +  + R        + APE       T K DV+SFG+
Sbjct: 135 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 194
Query: 61  VTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFA 117
           +  E++  G+ P           +P+++       R+  P    +++ Q + L       
Sbjct: 195 LLTEIVTHGRIP------YPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL------- 241
Query: 118 CLQSNPKSRPTMQYV 132
           C +  P+ RPT  Y+
Sbjct: 242 CWKERPEDRPTFDYL 256

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 173 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 232
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 233 VLLWEIFTLGGSP 245

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 180 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 239
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 240 VLLWEIFTLGGSP 252

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 172 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 231
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 232 VLLWEIFTLGGSP 244

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 180 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 239
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 240 VLLWEIFTLGGSP 252

>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2 (Erbb2). Length = 338

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSF 58
            N+++ S     + DFG ARLL  D +      G     ++A E       T + DV+S+
Sbjct: 148 RNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRRRFTHQSDVWSY 207
Query: 59  GVVTLEVL-MGKHPRDXXXXXXXXXDPKIMLIDVLD--QRLP-PPVDQKVIQDILLASTI 114
           GV   E++  G  P D          P   + D+L+  +RLP PP+      D+ +   I
Sbjct: 208 GVTVWELMTFGAKPYDGI--------PAREIPDLLEKGERLPQPPI---CTIDVYM---I 253
Query: 115 SFACLQSNPKSRPTMQYVSQEFLITRKTP 143
              C   + + RP  + +  EF    + P
Sbjct: 254 MVKCWMIDSECRPRFRELVSEFSRMARDP 282

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 180 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 239
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 240 VLLWEIFTLGGSP 252

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 233 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 292
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 293 VLMWEIFTLGGSP 305

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 196 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 253
Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 254 SLVEMAVGRYP 264

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 174 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 233
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 234 VLMWEIFTLGGSP 246

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 348 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 404
Query: 58  FGVVTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVL-----DQRLPPP--VDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 405 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 450
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 451 ----LMRACWQWNPSDRPSFAEIHQAF 473

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPE-LAYTMVMTEKCDVYS 57
           N ++  N    VADFG +RL+  D+   T  AG      + APE LAY    + K DV++
Sbjct: 387 NCLVGENHLVKVADFGLSRLMTGDT--YTAHAGAKFPIKWTAPESLAYNK-FSIKSDVWA 443
Query: 58  FGVVTLEVLM-GKHPRDXXXXXXXXXDPKIMLIDVL-----DQRLPPP--VDQKVIQDIL 109
           FGV+  E+   G  P            P I L  V      D R+  P    +KV +   
Sbjct: 444 FGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYE--- 489
Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
               +  AC Q NP  RP+   + Q F
Sbjct: 490 ----LMRACWQWNPSDRPSFAEIHQAF 512

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL-------AYTMVMTEKC 53
           +NI+L+ +    + DF  A +L  ++   T +AGT  Y+APE+        Y+  +    
Sbjct: 144 DNILLDEHGHVHITDFNIAAMLPRETQ-ITTMAGTKPYMAPEMFSSRKGAGYSFAV---- 198
Query: 54  DVYSFGVVTLEVLMGKHP 71
           D +S GV   E+L G+ P
Sbjct: 199 DWWSLGVTAYELLRGRRP 216

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +    G     ++APE  +  + T + DV+SFG
Sbjct: 221 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 280
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 281 VLLWEIFTLGGSP 293

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 161 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 218
Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 219 SLVEMAVGRYP 229

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 246
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 247 VLMWEIFTLGGSP 259

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 176 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 235
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 236 VLMWEIFTLGGSP 248

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG 68
           V DFG+A     D  + + +  T  Y APE+   +  ++ CDV+S G +  E  +G
Sbjct: 197 VVDFGSATF---DHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVG 249

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTY--GYIAPELAYTMVMTEKCDVYSFG 59
           N+++  N    +ADFG AR ++     +    G     ++APE  +  V T + DV+SFG
Sbjct: 179 NVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFG 238
Query: 60  VVTLEVL-MGKHP 71
           V+  E+  +G  P
Sbjct: 239 VLMWEIFTLGGSP 251

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+
Sbjct: 134 SNILVNSRGEIKLCDFGVSGQLIDSMANS--FVGTRSYMSPERLQGTHYSVQSDIWSMGL 191
Query: 61  VTLEVLMGKHP 71
             +E+ +G++P
Sbjct: 192 SLVEMAVGRYP 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-32
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	3e-27
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	3e-27
3soc_A	322	Activin receptor type-2A; structural genomics cons	5e-26
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-21
3q4u_A	301	Activin receptor type-1; structural genomics conso	1e-20
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	2e-20
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-19
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-19
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-19
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	8e-19
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-18
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-18
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-18
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	8e-18
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-18
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	2e-15
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	3e-15
2a19_B	284	Interferon-induced, double-stranded RNA-activated	7e-15
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-14
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	7e-14
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-13
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-13
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	6e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	6e-13
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	7e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-12
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	2e-12
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-12
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	3e-12
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	5e-12
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	5e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	7e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-12
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	1e-11
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-11
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-11
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-11
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-11
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-11
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-11
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-11
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-11
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-11
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	5e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-11
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	7e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	7e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	7e-11
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	9e-11
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	1e-10
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-10
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-10
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-10
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-10
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-10
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	4e-10
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	4e-10
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-10
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-10
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-10
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-10
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	9e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-09
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-09
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-09
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	1e-09
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-09
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	2e-09
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	2e-09
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-09
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-09
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	3e-09
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-09
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	5e-09
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	6e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	8e-09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	9e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-08
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-08
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-08
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	4e-08
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-08
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	6e-08
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	6e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	8e-08
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	9e-08
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-07
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-07
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-07
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-07
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-07
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-07
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	3e-07
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-07
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-07
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-07
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	5e-07
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-07
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	5e-07
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	6e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	7e-07
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	8e-07
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	9e-07
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	9e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	9e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-06
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-06
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-06
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	2e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-06
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	2e-06
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-06
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	3e-06
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	3e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-06
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	5e-06
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	6e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	7e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	7e-06
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	9e-06
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-05
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	2e-05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	2e-05
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-05
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	4e-05
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	5e-05
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	5e-05
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	8e-05
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	8e-05
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	9e-05
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	9e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-04
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-04
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	4e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	7e-04
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	8e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  116 bits (294), Expect = 1e-32
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 22/146 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+L+   EA V DFG A+L+    ++  T + GT G+IAPE   T   +EK DV+ +GV
Sbjct: 164 NILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGV 223

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLID-------------VLDQRLPPPVDQK-VIQ 106
           + LE++ G+   DL      ++D  +ML+D             ++D  L      + V Q
Sbjct: 224 MLLELITGQRAFDL---ARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQ 280

Query: 107 DILLASTISFACLQSNPKSRPTMQYV 132
            I +A      C QS+P  RP M  V
Sbjct: 281 LIQVAL----LCTQSSPMERPKMSEV 302

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  102 bits (257), Expect = 3e-27
 Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 13/141 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+L+ N    + DFG ++           T++ GT GYI PE      +TEK DVYSFG
Sbjct: 169 NILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFG 228

Query: 60  VVTLEVLMGKHPRDLLSSLSSSS--------DPKIMLIDVLDQRLPPPVDQKVIQDILLA 111
           VV  EVL  +            +             L  ++D  L   +  +    +   
Sbjct: 229 VVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPE---SLRKF 285

Query: 112 STISFACLQSNPKSRPTMQYV 132
              +  CL  + + RP+M  V
Sbjct: 286 GDTAVKCLALSSEDRPSMGDV 306

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  102 bits (256), Expect = 3e-27
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 32/149 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS----SNRTLLAGTYGYIAPELAYTMVMTEKCDVYS 57
           NI+L+    A ++DFG AR     +    ++R  + GT  Y+APE A    +T K D+YS
Sbjct: 163 NILLDEAFTAKISDFGLARASEKFAQTVMTSR--IVGTTAYMAPE-ALRGEITPKSDIYS 219

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLID--------------VLDQRLPPPVDQK 103
           FGVV LE++ G    D             +L+D               +D+++    +  
Sbjct: 220 FGVVLLEIITGLPAVD-------EHREPQLLLDIKEEIEDEEKTIEDYIDKKM----NDA 268

Query: 104 VIQDILLASTISFACLQSNPKSRPTMQYV 132
               +    +++  CL      RP ++ V
Sbjct: 269 DSTSVEAMYSVASQCLHEKKNKRPDIKKV 297

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 99.4 bits (248), Expect = 5e-26
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 20/150 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELA-----YTMVMTEKCD 54
           N++L +NL A +ADFG A    A  S  +     GT  Y+APE+      +      + D
Sbjct: 161 NVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRID 220

Query: 55  VYSFGVVTLEVLMGKHPRD-------LLSSLSSSSDPKI--MLIDVLDQRLPPPVDQKVI 105
           +Y+ G+V  E+       D       L         P +  M   V+ ++  P +     
Sbjct: 221 MYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQ 280

Query: 106 QDI---LLASTISFACLQSNPKSRPTMQYV 132
           +     +L  TI   C   + ++R +   V
Sbjct: 281 KHAGMAMLCETIE-ECWDHDAEARLSAGCV 309

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 87.4 bits (217), Expect = 1e-21
 Identities = 31/137 (22%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 2   NIILNSNLEAF-VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N++L +      + DFGTA  +    +N     G+  ++APE+      +EKCDV+S+G+
Sbjct: 135 NLLLVAGGTVLKICDFGTACDIQTHMTNNK---GSAAWMAPEVFEGSNYSEKCDVFSWGI 191

Query: 61  VTLEVLMGKHP-RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           +  EV+  + P  ++         P   ++  +     PP+ + + +   + S ++  C 
Sbjct: 192 ILWEVITRRKPFDEI-------GGPAFRIMWAVHNGTRPPLIKNLPKP--IESLMT-RCW 241

Query: 120 QSNPKSRPTMQYVSQEF 136
             +P  RP+M+ + +  
Sbjct: 242 SKDPSQRPSMEEIVKIM 258

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 84.7 bits (210), Expect = 1e-20
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 22/156 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPEL------AYTMVMTE 51
           NI++  N +  +AD G A +    ++          GT  Y+APE+             +
Sbjct: 143 NILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYK 202

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLSSLS------SSSDPKI--MLIDVLDQRLPPPVDQK 103
           + D+++FG+V  EV        ++            +DP    M   V   +  P +  +
Sbjct: 203 RVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNR 262

Query: 104 VIQDI---LLASTISFACLQSNPKSRPTMQYVSQEF 136
              D     LA  +   C   NP +R T   + +  
Sbjct: 263 WFSDPTLTSLAKLMK-ECWYQNPSARLTALRIKKTL 297

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 84.3 bits (209), Expect = 2e-20
 Identities = 36/161 (22%), Positives = 61/161 (37%), Gaps = 30/161 (18%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
            N++++      V DFG +RL  +   +    AGT  ++APE+           EK DVY
Sbjct: 168 PNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPS----NEKSDVY 223

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-----QKVIQDILLA 111
           SFGV+  E+   + P   L+         +  +    +RL  P +       +I+     
Sbjct: 224 SFGVILWELATLQQPWGNLNPAQV-----VAAVGFKCKRLEIPRNLNPQVAAIIEG---- 274

Query: 112 STISFACLQSNPKSRPTMQYVSQ--EFLITRKTPLVKHAAI 150
                 C  + P  RP+   +      LI    P    + +
Sbjct: 275 ------CWTNEPWKRPSFATIMDLLRPLIKSAVPPPNRSDL 309

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 81.3 bits (201), Expect = 3e-19
 Identities = 36/152 (23%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLL----AGTYGYIAPE-LAYTMVM-----TE 51
           NI++  N    +AD G A    +D++   +      GT  Y+ PE L  ++         
Sbjct: 172 NILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYI 231

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLSSLS------SSSDPKI--MLIDVLDQRLPPPVDQK 103
             D+YSFG++  EV        ++            SDP    M   V  ++L P    +
Sbjct: 232 MADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNR 291

Query: 104 VIQDIL---LASTISFACLQSNPKSRPTMQYV 132
              D     +   ++  C   NP SR T   V
Sbjct: 292 WSSDECLRQMGKLMT-ECWAHNPASRLTALRV 322

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 80.8 bits (200), Expect = 3e-19
 Identities = 42/150 (28%), Positives = 58/150 (38%), Gaps = 36/150 (24%)

Query: 2   NIILNSNLEAF-----VADFGTARLLHADSSNRTLLAGTYGYIAPEL------AYTMVMT 50
           NI L S  E       VADFG ++      S      G + ++APE       +YT    
Sbjct: 154 NIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLL---GNFQWMAPETIGAEEESYT---- 206

Query: 51  EKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-----QKVI 105
           EK D YSF ++   +L G+ P D  S         I +I     R   P D     + VI
Sbjct: 207 EKADTYSFAMILYTILTGEGPFDEYSYGKIK---FINMIREEGLRPTIPEDCPPRLRNVI 263

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQE 135
           +           C   +PK RP   Y+ +E
Sbjct: 264 EL----------CWSGDPKKRPHFSYIVKE 283

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 79.6 bits (197), Expect = 7e-19
 Identities = 33/142 (23%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 2   NIILNSNLEAF--------VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKC 53
           NI++   +E          + DFG AR  H   + +   AG Y ++APE+    + ++  
Sbjct: 138 NILILQKVENGDLSNKILKITDFGLAREWH--RTTKMSAAGAYAWMAPEVIRASMFSKGS 195

Query: 54  DVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST 113
           DV+S+GV+  E+L G+ P   +  L+       +   V   +L  P+     +     + 
Sbjct: 196 DVWSYGVLLWELLTGEVPFRGIDGLA-------VAYGVAMNKLALPIPSTCPEPF---AK 245

Query: 114 ISFACLQSNPKSRPTMQYVSQE 135
           +   C   +P SRP+   +  +
Sbjct: 246 LMEDCWNPDPHSRPSFTNILDQ 267

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 80.3 bits (198), Expect = 8e-19
 Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 31/161 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR--------TLLAGTYGYIAPELAYTMV----- 48
           N+++ ++    ++DFG +  L  +   R            GT  Y+APE+    V     
Sbjct: 150 NVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDX 209

Query: 49  --MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS---------SSDPKI--MLIDVLDQR 95
               ++ D+Y+ G++  E+ M         S+            + P    M + V  ++
Sbjct: 210 ESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREK 269

Query: 96  LPPPVDQKVIQDIL----LASTISFACLQSNPKSRPTMQYV 132
             P   +   ++ L    L  TI   C   + ++R T Q  
Sbjct: 270 QRPKFPEAWKENSLAVRSLKETIE-DCWDQDAEARLTAQXA 309

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 80.2 bits (198), Expect = 1e-18
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 22/152 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLL----AGTYGYIAPE-LAYTMVM-----TE 51
           NI++  N    +AD G A    + +    +      GT  Y+APE L  ++ M      +
Sbjct: 177 NILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK 236

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLS------SLSSSSDPKI--MLIDVLDQRLPPPVDQK 103
           + D+Y+ G+V  E+        +             SDP +  M   V +Q+L P +  +
Sbjct: 237 RADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR 296

Query: 104 VIQDIL---LASTISFACLQSNPKSRPTMQYV 132
                    +A  +   C  +N  +R T   +
Sbjct: 297 WQSCEALRVMAKIMR-ECWYANGAARLTALRI 327

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 78.9 bits (195), Expect = 2e-18
 Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 27/151 (17%)

Query: 2   NIILNSNLEAFVADFGTARLL--------------HADSSNRTLLAGTYGYIAPELAYTM 47
           N ++  N    VADFG ARL+                D   R  + G   ++APE+    
Sbjct: 138 NCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGR 197

Query: 48  VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD--QKVI 105
              EK DV+SFG+V  E++   +        +        L          P +      
Sbjct: 198 SYDEKVDVFSFGIVLCEIIGRVNADPDYLPRT----MDFGLNVRGFLDRYCPPNCPPSFF 253

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEF 136
                   I+  C   +P+ RP+   +    
Sbjct: 254 P-------ITVRCCDLDPEKRPSFVKLEHWL 277

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 76.9 bits (190), Expect = 8e-18
 Identities = 20/140 (14%), Positives = 48/140 (34%), Gaps = 30/140 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVYS 57
           +++++ ++ A ++         +             ++APE               D++S
Sbjct: 143 SVMIDEDMTARISMADVKFSFQSPGR-----MYAPAWVAPEALQKKPEDTN-RRSADMWS 196

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-----QKVIQDILLAS 112
           F V+  E++  + P   LS++        M + +   R   P        K+++      
Sbjct: 197 FAVLLWELVTREVPFADLSNMEI-----GMKVALEGLRPTIPPGISPHVSKLMKI----- 246

Query: 113 TISFACLQSNPKSRPTMQYV 132
                C+  +P  RP    +
Sbjct: 247 -----CMNEDPAKRPKFDMI 261

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 77.0 bits (190), Expect = 9e-18
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 17/140 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLH--ADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           NNI L+ +    + DFG A      + S     L+G+  ++APE+     +   + + DV
Sbjct: 149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDV 208

Query: 56  YSFGVVTLEVLMGKHP-RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI--LLAS 112
           Y+FG+V  E++ G+ P  ++        + +  +I+++ +    P   KV  +    +  
Sbjct: 209 YAFGIVLYELMTGQLPYSNI--------NNRDQIIEMVGRGSLSPDLSKVRSNCPKRMKR 260

Query: 113 TISFACLQSNPKSRPTMQYV 132
            ++  CL+     RP+   +
Sbjct: 261 LMA-ECLKKKRDERPSFPRI 279

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 71.2 bits (174), Expect = 2e-15
 Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 14/134 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL--AYTMVMTEKCDVYSFG 59
           N+ +  +    + D           +     +    Y   E   A T   T   + +  G
Sbjct: 224 NLFIMPDGRLMLGDVSALW---KVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLG 280

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISF 116
           +    V     P  L++     S  +  L       L       +   ++ ++       
Sbjct: 281 LSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIG------ 334

Query: 117 ACLQSNPKSRPTMQ 130
             L  + + R    
Sbjct: 335 RFLNFDRRRRLLPL 348

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 70.1 bits (172), Expect = 3e-15
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 29/148 (19%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNR-----TLLAGTYGYIAPEL---------AYT 46
            N+  + N +  + DFG   +     + R      +  G   ++APE+            
Sbjct: 159 KNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDK 217

Query: 47  MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ--KV 104
           +  ++  DV++ G +  E+   + P     + +      I+       +         K 
Sbjct: 218 LPFSKHSDVFALGTIWYELHAREWPFKTQPAEA------IIWQMGTGMKPNLSQIGMGKE 271

Query: 105 IQDILLASTISFACLQSNPKSRPTMQYV 132
           I DILL       C     + RPT   +
Sbjct: 272 ISDILL------FCWAFEQEERPTFTKL 293

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L    +  + DFG    L  D        GT  Y++PE   +    ++ D+Y+ G++
Sbjct: 152 NIFLVDTKQVKIGDFGLVTSLKNDGKRTR-SKGTLRYMSPEQISSQDYGKEVDLYALGLI 210

Query: 62  TLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
             E+L +     +                D+ D  +    D+K        + +    L 
Sbjct: 211 LAELLHVCDTAFETSK----------FFTDLRDGIISDIFDKK------EKTLLQ-KLLS 253

Query: 121 SNPKSRPTMQYVSQEFLITRKTP 143
             P+ RP    + +   + +K+P
Sbjct: 254 KKPEDRPNTSEILRTLTVWKKSP 276

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 27/146 (18%)

Query: 2   NIIL-----NSNLEAFVADFGTARLLHADSSNRTLL---AGTYGYIAPEL---AYTMVMT 50
           NI++     +  ++A ++DFG  + L     + +      GT G+IAPE+         T
Sbjct: 148 NILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPT 207

Query: 51  EKCDVYSFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI- 108
              D++S G V   V+  G HP          S  +   I +    L     +K    I 
Sbjct: 208 YTVDIFSAGCVFYYVISEGSHPFG-------KSLQRQANILLGACSLDCLHPEKHEDVIA 260

Query: 109 --LLASTISFACLQSNPKSRPTMQYV 132
             L+        +  +P+ RP+ ++V
Sbjct: 261 RELIEK-----MIAMDPQKRPSAKHV 281

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 66.5 bits (163), Expect = 7e-14
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N ++       ++DFG +R            +G    +     APE       + + DV+
Sbjct: 243 NCLVTEKNVLKISDFGMSREEADGVYAA---SGGLRQVPVKWTAPEALNYGRYSSESDVW 299

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFG++  E    G  P            P +      +      RLP P      +  ++
Sbjct: 300 SFGILLWETFSLGASPY-----------PNLSNQQTREFVEKGGRLPCPELCPDAVFRLM 348

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C    P  RP+   + QE 
Sbjct: 349 E------QCWAYEPGQRPSFSTIYQEL 369

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L+      + DFG AR+L+ D+S      GT  Y++PE    M   EK D++S G +
Sbjct: 146 NVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 205

Query: 62  TLEVLMGKHP---RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
             E+     P                   L   + +     +  +   +  L   I+   
Sbjct: 206 LYELCALMPPFTAFSQKE-----------LAGKIREGKFRRIPYRYSDE--LNEIIT-RM 251

Query: 119 LQSNPKSRPTMQ 130
           L      RP+++
Sbjct: 252 LNLKDYHRPSVE 263

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 65.3 bits (159), Expect = 2e-13
 Identities = 32/149 (21%), Positives = 52/149 (34%), Gaps = 26/149 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSS------------NRTLLAGTYGYIAPELAYTMVM 49
           NI    +    V DFG    +  D                T   GT  Y++PE  +    
Sbjct: 194 NIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNY 253

Query: 50  TEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL 109
           + K D++S G++  E         LL S S+  +   ++ DV + + P    QK  Q   
Sbjct: 254 SHKVDIFSLGLILFE---------LLYSFSTQMERVRIITDVRNLKFPLLFTQKYPQ--- 301

Query: 110 LASTISFACLQSNPKSRPTMQYVSQ-EFL 137
               +    L  +P  RP    + +    
Sbjct: 302 EHMMVQ-DMLSPSPTERPEATDIIENAIF 329

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI L  +    + DFG AR+L++         GT  Y++PE+        K D+++ G V
Sbjct: 155 NIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCV 214

Query: 62  TLEVLMGKHP---RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
             E+   KH      + + +      KI+          PPV      D  L S +S   
Sbjct: 215 LYELCTLKHAFEAGSMKNLVL-----KII------SGSFPPVSLHYSYD--LRSLVS-QL 260

Query: 119 LQSNPKSRPT 128
            + NP+ RP+
Sbjct: 261 FKRNPRDRPS 270

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 64.4 bits (157), Expect = 6e-13
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 29/145 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++  NL   VADFG ARL+  +   +           + APE A     T K DV+SF
Sbjct: 310 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFP--IKWTAPEAALYGRFTIKSDVWSF 367

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G++  E+   G+ P            P ++  +VLDQ     R+P P +  + + D++  
Sbjct: 368 GILLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC- 415

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C +  P+ RPT +Y+    
Sbjct: 416 -----QCWRKEPEERPTFEYLQAFL 435

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 19/131 (14%)

Query: 2   NIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI +        + D G A L    +S    + GT  ++APE+ Y     E  DVY+FG+
Sbjct: 161 NIFITGPTGSVKIGDLGLATLKR--ASFAKAVIGTPEFMAPEM-YEEKYDESVDVYAFGM 217

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ---KVIQDILLASTISFA 117
             LE+   ++P     + +      I    V     P   D+     +++I+        
Sbjct: 218 CMLEMATSEYPYSECQNAAQ-----IYRR-VTSGVKPASFDKVAIPEVKEIIE------G 265

Query: 118 CLQSNPKSRPT 128
           C++ N   R +
Sbjct: 266 CIRQNKDERYS 276

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 64.1 bits (156), Expect = 7e-13
 Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 29/145 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++  NL   VADFG ARL+  +   +           + APE A     T K DV+SF
Sbjct: 393 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFP--IKWTAPEAALYGRFTIKSDVWSF 450

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G++  E+   G+ P            P ++  +VLDQ     R+P P +  + + D++  
Sbjct: 451 GILLTELTTKGRVPY-----------PGMVNREVLDQVERGYRMPCPPECPESLHDLMC- 498

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C +  P+ RPT +Y+    
Sbjct: 499 -----QCWRKEPEERPTFEYLQAFL 518

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 37/145 (25%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           N ++  N    VADFG +RL+  D   +           + APE       + K DV++F
Sbjct: 348 NCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFP--IKWTAPESLAYNKFSIKSDVWAF 405

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           GV+  E+   G  P            P I L  V +      R+  P    + + +++  
Sbjct: 406 GVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYELMR- 453

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                AC Q NP  RP+   + Q F
Sbjct: 454 -----ACWQWNPSDRPSFAEIHQAF 473

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 62.3 bits (152), Expect = 2e-12
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 34/148 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG------TYGYIAPELAYTMVMTEKCDV 55
           N+++ +     + DFG A+LL A+        G           A E     + T + DV
Sbjct: 147 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWM----ALESILHRIYTHQSDV 202

Query: 56  YSFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           +S+GV   E++  G  P              I   ++        RLP P      +  I
Sbjct: 203 WSYGVTVWELMTFGSKPY-----------DGIPASEISSILEKGERLPQPPICTIDVYMI 251

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEF 136
           +        C   +  SRP  + +  EF
Sbjct: 252 MR------KCWMIDADSRPKFRELIIEF 273

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++++  A++ DFG A     +   +     GT  Y+APE       T + D+Y+   
Sbjct: 164 NILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTC 223

Query: 61  VTLEVLMGKHP 71
           V  E L G  P
Sbjct: 224 VLYECLTGSPP 234

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 61.1 bits (149), Expect = 5e-12
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 36/141 (25%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++SN    + DFG A+ L   S  +T  + GT  Y +PE A      E  D+YS G+
Sbjct: 141 NILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGI 200

Query: 61  VTLEVLMG--------------KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQ 106
           V  E+L+G              KH +D + ++++     I          P  +   +++
Sbjct: 201 VLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDI----------PQSLSNVILR 250

Query: 107 DILLASTISFACLQSNPKSRP 127
                        + +  +R 
Sbjct: 251 -----------ATEKDKANRY 260

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 61.2 bits (149), Expect = 5e-12
 Identities = 33/155 (21%), Positives = 51/155 (32%), Gaps = 26/155 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADS------------SNRTLLAGTYGYIAPELAYTMVM 49
           NI    +    V DFG    +  D             +  T   GT  Y++PE  +    
Sbjct: 148 NIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSY 207

Query: 50  TEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL 109
           + K D++S G++  E         LL   S+  +    L DV + + PP   QK      
Sbjct: 208 SHKVDIFSLGLILFE---------LLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPC--- 255

Query: 110 LASTISFACLQSNPKSRPTMQYV-SQEFLITRKTP 143
               +    L  +P  RP    +           P
Sbjct: 256 EYVMVQ-DMLSPSPMERPEAINIIENAVFEDLDFP 289

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 25/144 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD--------------SSNRTLLAGTYGYIAPE-LAYT 46
           NI ++ +    + DFG A+ +H                S N T   GT  Y+A E L  T
Sbjct: 146 NIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGT 205

Query: 47  MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQ 106
               EK D+YS G++  E++          ++      K+  + +     PP  D   ++
Sbjct: 206 GHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILK----KLRSVSI---EFPPDFDDNKMK 258

Query: 107 DILLASTISFACLQSNPKSRPTMQ 130
                  I    +  +P  RP  +
Sbjct: 259 V--EKKIIR-LLIDHDPNKRPGAR 279

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 27/139 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE--------LAYTMVMTEKC 53
           NI+L+ +    + DFG +  L  DS  +T  AG   Y+APE          Y      + 
Sbjct: 156 NILLDRSGNIKLCDFGISGQL-VDSIAKTRDAGCRPYMAPERIDPSASRQGYD----VRS 210

Query: 54  DVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLA 111
           DV+S G+   E+  G+ P    +S          + D L Q  +  PP      +     
Sbjct: 211 DVWSLGITLYELATGRFPYPKWNS----------VFDQLTQVVKGDPPQLSNSEEREFSP 260

Query: 112 STISF--ACLQSNPKSRPT 128
           S I+F   CL  +   RP 
Sbjct: 261 SFINFVNLCLTKDESKRPK 279

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 60.4 bits (147), Expect = 1e-11
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 25/164 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI++ S     +ADFG A+LL  D           G       APE     + + + DV+
Sbjct: 157 NILVESEAHVKIADFGLAKLLPLDKDYYV--VREPGQSPIFWYAPESLSDNIFSRQSDVW 214

Query: 57  SFGVVTLEVLM-GKHP---RDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQ 106
           SFGVV  E+                +         L  +L+      RLP P      + 
Sbjct: 215 SFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAPPACPAEVH 274

Query: 107 DILLASTISFACLQSNPKSRPTMQYVSQEF--LITRKTPLVKHA 148
           +++        C   +P+ RP+   +  +   L +       HA
Sbjct: 275 ELMK------LCWAPSPQDRPSFSALGPQLDMLWSGSRGCETHA 312

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 60.3 bits (146), Expect = 1e-11
 Identities = 33/165 (20%), Positives = 61/165 (36%), Gaps = 29/165 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           N++L +   A ++DFG ++ L AD S  T  +     +   APE       + + DV+S+
Sbjct: 466 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 525

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           GV   E L  G+ P             K+   +V+       R+  P +    +  ++  
Sbjct: 526 GVTMWEALSYGQKPY-----------KKMKGPEVMAFIEQGKRMECPPECPPELYALMS- 573

Query: 112 STISFACLQSNPKSRPTMQYVSQEF--LITRKTPLVKHAAIQDIS 154
                 C     + RP    V Q            V+  +  +++
Sbjct: 574 -----DCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGGSALEVA 613

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 36/143 (25%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE-----KCDVY 56
           NI+L+   +  + DFG +  L  D   +   AG   Y+APE       T+     + DV+
Sbjct: 155 NILLDERGQIKLCDFGISGRL-VDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVW 213

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTI 114
           S G+  +E+  G+ P     +            +VL +  +  PP         LL   +
Sbjct: 214 SLGISLVELATGQFPYKNCKT----------DFEVLTKVLQEEPP---------LLPGHM 254

Query: 115 SF---------ACLQSNPKSRPT 128
            F          CL  + + RP 
Sbjct: 255 GFSGDFQSFVKDCLTKDHRKRPK 277

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 30/139 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE--------LAYTMVMTEKC 53
           N+++N+  +  + DFG +  L  D   + + AG   Y+APE          Y++    K 
Sbjct: 140 NVLINALGQVKMCDFGISGYL-VDDVAKDIDAGCKPYMAPERINPELNQKGYSV----KS 194

Query: 54  DVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLA 111
           D++S G+  +E+ + + P        S   P       L Q    P P   ++  D   A
Sbjct: 195 DIWSLGITMIELAILRFP------YDSWGTP----FQQLKQVVEEPSP---QLPADKFSA 241

Query: 112 STISF--ACLQSNPKSRPT 128
             + F   CL+ N K RPT
Sbjct: 242 EFVDFTSQCLKKNSKERPT 260

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 19/139 (13%)

Query: 6   NSNLEAFVADFGTARLLHADSSNRTL----LAGTYGYIAPEL-------AYTMVMTEKCD 54
             NL   ++DFG  + L +  S+        +GT G+ APEL            +T   D
Sbjct: 162 AENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSID 221

Query: 55  VYSFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST 113
           ++S G V   +L  GKHP         S +  I+        +    D+ +I +   A+ 
Sbjct: 222 IFSMGCVFYYILSKGKHPFG----DKYSRESNIIRGIFSLDEMKCLHDRSLIAE---ATD 274

Query: 114 ISFACLQSNPKSRPTMQYV 132
           +    +  +P  RPT   V
Sbjct: 275 LISQMIDHDPLKRPTAMKV 293

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 29/145 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           NI+++++L   +ADFG AR++  +    T   G    I   APE       T K DV+SF
Sbjct: 314 NILVSASLVCKIADFGLARVIEDNE--YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSF 371

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G++ +E++  G+ P            P +   +V+       R+P P +  + + +I++ 
Sbjct: 372 GILLMEIVTYGRIPY-----------PGMSNPEVIRALERGYRMPRPENCPEELYNIMM- 419

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C ++ P+ RPT +Y+    
Sbjct: 420 -----RCWKNRPEERPTFEYIQSVL 439

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 59.2 bits (144), Expect = 2e-11
 Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 39/143 (27%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT---LLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++++     V DFG AR +    ++ T    + GT  Y++PE A    +  + DVYS 
Sbjct: 146 NIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSL 205

Query: 59  GVVTLEVLMG--------------KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV 104
           G V  EVL G              +H R+     S+             + L   +D  V
Sbjct: 206 GCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSA-----------RHEGLSADLDAVV 254

Query: 105 IQDILLASTISFACLQSNPKSRP 127
           ++            L  NP++R 
Sbjct: 255 LK-----------ALAKNPENRY 266

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 19/137 (13%), Positives = 41/137 (29%), Gaps = 26/137 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYG---YIAPELAY-----TMVMTEKC 53
           +I+L+     F+  F         +S  + +   +      A  +         +MT   
Sbjct: 241 DIVLDQRGGVFLTGFEHLV--RDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAF 298

Query: 54  DVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLAST 113
           D ++ G+    +     P    ++L          I    + +P PV     + +L    
Sbjct: 299 DTWTLGLAIYWIWCADLPNTDDAALGG-----SEWIFRSCKNIPQPV-----RALLE--- 345

Query: 114 ISFACLQSNPKSRPTMQ 130
                L+   + R    
Sbjct: 346 ---GFLRYPKEDRLLPL 359

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 59.3 bits (144), Expect = 3e-11
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++L S  +  VADFG A LL  D         +         A E  +    T + DV+
Sbjct: 145 NVLLKSPSQVQVADFGVADLLPPDDKQL---LYSEAKTPIKWMALESIHFGKYTHQSDVW 201

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           S+GV   E++  G  P              + L +V D      RL  P      +  ++
Sbjct: 202 SYGVTVWELMTFGAEPY-----------AGLRLAEVPDLLEKGERLAQPQICTIDVYMVM 250

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
           +       C   +   RPT + ++ EF
Sbjct: 251 V------KCWMIDENIRPTFKELANEF 271

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 26/136 (19%), Positives = 53/136 (38%), Gaps = 14/136 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ + +     + D G  R   + ++    L GT  Y++PE  +      K D++S G +
Sbjct: 166 NVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL 225

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPP-PVDQ--KVIQDILLASTISFAC 118
             E+   + P           +   +   +     PP P D   + ++ ++        C
Sbjct: 226 LYEMAALQSPFY-----GDKMNLYSLCKKIEQCDYPPLPSDHYSEELRQLVN------MC 274

Query: 119 LQSNPKSRPTMQYVSQ 134
           +  +P+ RP + YV  
Sbjct: 275 INPDPEKRPDVTYVYD 290

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++ +     + DFG A+LL A+           G +     A E     + T + DV+
Sbjct: 147 NVLVKTPQHVKITDFGLAKLLGAEEKEYH---AEGGKVPIKWMALESILHRIYTHQSDVW 203

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           S+GV   E++  G  P              I   ++        RLP P      +  I+
Sbjct: 204 SYGVTVWELMTFGSKPY-----------DGIPASEISSILEKGERLPQPPICTIDVYMIM 252

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
           +       C   +  SRP  + +  EF
Sbjct: 253 V------KCWMIDADSRPKFRELIIEF 273

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 23/150 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++ S  +  + DFG  + +  D    T              APE           DV+
Sbjct: 156 NVLVESEHQVKIGDFGLTKAIETDKEYYT--VKDDRDSPVFWYAPECLMQSKFYIASDVW 213

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSD---PKIMLIDVLDQ-----RLPPPVD-QKVIQ 106
           SFGV   E+L         ++           ++ +  +++      RLP P +    + 
Sbjct: 214 SFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCPDEVY 273

Query: 107 DILLASTISFACLQSNPKSRPTMQYVSQEF 136
            ++        C +  P +R + Q + + F
Sbjct: 274 QLMR------KCWEFQPSNRTSFQNLIEGF 297

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDVYSF 58
           NI L       + DFG    L    +      G   Y+APEL   +Y        DV+S 
Sbjct: 187 NIFLGPRGRCKLGDFGLLVELGTAGAGEVQE-GDPRYMAPELLQGSYG----TAADVFSL 241

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G+  LEV                   ++         LPP     +  +  L S +    
Sbjct: 242 GLTILEVACNMELPHGGEGW-----QQLR-----QGYLPPEFTAGLSSE--LRSVLV-MM 288

Query: 119 LQSNPKSRPT 128
           L+ +PK R T
Sbjct: 289 LEPDPKLRAT 298

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 58.4 bits (142), Expect = 5e-11
 Identities = 33/147 (22%), Positives = 56/147 (38%), Gaps = 31/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++L +   A ++DFG ++ L AD +     A T+G       APE       + K DV+
Sbjct: 147 NVLLVTQHYAKISDFGLSKALRADENYYK--AQTHGKWPVKWYAPECINYYKFSSKSDVW 204

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGV+  E    G+ P              +   +V        R+  P    + + D++
Sbjct: 205 SFGVLMWEAFSYGQKPY-----------RGMKGSEVTAMLEKGERMGCPAGCPREMYDLM 253

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C   + ++RP    V    
Sbjct: 254 N------LCWTYDVENRPGFAAVELRL 274

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 58.0 bits (141), Expect = 5e-11
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 35/156 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYI---APELAYTMVMTEKCDV 55
           N ++  N    V+DFG  R +  D   SS  T        +   +PE+      + K DV
Sbjct: 134 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFP-----VKWASPEVFSFSRYSSKSDV 188

Query: 56  YSFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           +SFGV+  EV   GK P                  +V++      RL  P      +  I
Sbjct: 189 WSFGVLMWEVFSEGKIPY-----------ENRSNSEVVEDISTGFRLYKPRLASTHVYQI 237

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL 144
           +        C +  P+ RP    + ++     ++ L
Sbjct: 238 MN------HCWRERPEDRPAFSRLLRQLAEIAESGL 267

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 33/147 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N ++  N    VADFG +RL+  D    T  A           APE       + K DV+
Sbjct: 141 NCLVGENHLVKVADFGLSRLMTGD----TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVW 196

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           +FGV+  E+   G  P            P I L  V +      R+  P    + + +++
Sbjct: 197 AFGVLLWEIATYGMSPY-----------PGIDLSQVYELLEKDYRMERPEGCPEKVYELM 245

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                  AC Q NP  RP+   + Q F
Sbjct: 246 R------ACWQWNPSDRPSFAEIHQAF 266

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 58.0 bits (141), Expect = 7e-11
 Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 28/146 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGT---YGYIAPELAYTMVMTEKCDVYSF 58
           N++L +     + DFG  R L  +  +  +       + + APE   T   +   D + F
Sbjct: 151 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMF 210

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ------RLPPPVD-QKVIQDILL 110
           GV   E+   G+ P              +    +L +      RLP P D  + I ++++
Sbjct: 211 GVTLWEMFTYGQEPW-----------IGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMV 259

Query: 111 ASTISFACLQSNPKSRPTMQYVSQEF 136
                  C    P+ RPT   +    
Sbjct: 260 ------QCWAHKPEDRPTFVALRDFL 279

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 57.6 bits (140), Expect = 7e-11
 Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 29/145 (20%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           N +++ +L   V+DFG  R +  D    +   GT   +   APE+ +    + K DV++F
Sbjct: 134 NCLVDRDLCVKVSDFGMTRYVLDDQYVSS--VGTKFPVKWSAPEVFHYFKYSSKSDVWAF 191

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G++  EV   GK P                  +V+ +     RL  P      I  I+  
Sbjct: 192 GILMWEVFSLGKMPY-----------DLYTNSEVVLKVSQGHRLYRPHLASDTIYQIMY- 239

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                +C    P+ RPT Q +    
Sbjct: 240 -----SCWHELPEKRPTFQQLLSSI 259

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 57.6 bits (140), Expect = 9e-11
 Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 27/145 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           N++L +   A ++DFG ++ L AD S  T  +     +   APE       + + DV+S+
Sbjct: 140 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 199

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           GV   E L  G+ P             K+   +V+       R+  P +    +  ++  
Sbjct: 200 GVTMWEALSYGQKPY-----------KKMKGPEVMAFIEQGKRMECPPECPPELYALMS- 247

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C     + RP    V Q  
Sbjct: 248 -----DCWIYKWEDRPDFLTVEQRM 267

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 22/141 (15%), Positives = 44/141 (31%), Gaps = 33/141 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL-----------AYTMVMT 50
           +I+L+     F+  F            R + + + G+  PEL               +MT
Sbjct: 236 DIVLDQRGGVFLTGFEHLVRD----GARVVSSVSRGFEPPELEARRATISYHRDRRTLMT 291

Query: 51  EKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIM-LIDVLDQRLPPPVDQKVIQDIL 109
              D ++ G+V   +     P      ++  +       I    + +P PV     + +L
Sbjct: 292 FSFDAWALGLVIYWIWCADLP------ITKDAALGGSEWIFRSCKNIPQPV-----RALL 340

Query: 110 LASTISFACLQSNPKSRPTMQ 130
                    L+   + R    
Sbjct: 341 E------GFLRYPKEDRLLPL 355

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 27/145 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG  R+L  D        G    I   +PE       T   DV+S+
Sbjct: 177 NILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSY 236

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G+V  EV+  G+ P             ++   DV+       RLPPP+D    +  ++L 
Sbjct: 237 GIVLWEVMSYGERPY-----------WEMSNQDVIKAVDEGYRLPPPMDCPAALYQLML- 284

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C Q +  +RP  + +    
Sbjct: 285 -----DCWQKDRNNRPKFEQIVSIL 304

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 57.0 bits (138), Expect = 1e-10
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 27/144 (18%)

Query: 2   NIIL-NSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPEL-----------AYTM 47
           N ++ +  L+  + DFG A  +  D+++  +    GT  Y+ PE                
Sbjct: 138 NFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKS 195

Query: 48  VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQ 106
            ++ K DV+S G +   +  GK P   +     +   K+  I   +  +  P + +K +Q
Sbjct: 196 KISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEFPDIPEKDLQ 251

Query: 107 DILLASTISFACLQSNPKSRPTMQ 130
           D+L        CL+ +PK R ++ 
Sbjct: 252 DVLK------CCLKRDPKQRISIP 269

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 27/144 (18%)

Query: 2   NIIL-NSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPEL-----------AYTM 47
           N ++ +  L+  + DFG A  +  D+++  +    GT  Y+ PE                
Sbjct: 157 NFLIVDGMLK--LIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKS 214

Query: 48  VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQ 106
            ++ K DV+S G +   +  GK P   +     +   K+  I   +  +  P + +K +Q
Sbjct: 215 KISPKSDVWSLGCILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEFPDIPEKDLQ 270

Query: 107 DILLASTISFACLQSNPKSRPTMQ 130
           D+L        CL+ +PK R ++ 
Sbjct: 271 DVLK------CCLKRDPKQRISIP 288

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 36/149 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYI---APELAYTMVMTEKCDV 55
           N ++N      V+DFG +R +  D   SS  +        +    PE+      + K D+
Sbjct: 150 NCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFP-----VRWSPPEVLMYSKFSSKSDI 204

Query: 56  YSFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           ++FGV+  E+   GK P             +    +  +      RL  P    + +  I
Sbjct: 205 WAFGVLMWEIYSLGKMPY-----------ERFTNSETAEHIAQGLRLYRPHLASEKVYTI 253

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEFL 137
           +       +C       RPT + +    +
Sbjct: 254 MY------SCWHEKADERPTFKIL-LSNI 275

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 34/148 (22%), Positives = 59/148 (39%), Gaps = 35/148 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYI---APELAYTMVMTEKCDV 55
           NI+++  L   +ADFG ARL+  +   +            I   APE       T K DV
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP-----IKWTAPEAINYGTFTIKSDV 193

Query: 56  YSFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           +SFG++  E++  G+ P            P +   +V+       R+  P +  + +  +
Sbjct: 194 WSFGILLTEIVTHGRIPY-----------PGMTNPEVIQNLERGYRMVRPDNCPEELYQL 242

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEF 136
           +        C +  P+ RPT  Y+    
Sbjct: 243 MR------LCWKERPEDRPTFDYLRSVL 264

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 42/145 (28%), Positives = 60/145 (41%), Gaps = 27/145 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI---APELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D       +G    I   APE       T   DV+SF
Sbjct: 177 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 236

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLA 111
           G+V  EV+  G+ P   LS+            +V+       RLP P+D    I  +++ 
Sbjct: 237 GIVMWEVMTYGERPYWELSN-----------HEVMKAINDGFRLPTPMDCPSAIYQLMM- 284

Query: 112 STISFACLQSNPKSRPTMQYVSQEF 136
                 C Q     RP    +    
Sbjct: 285 -----QCWQQERARRPKFADIVSIL 304

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 30/142 (21%), Positives = 58/142 (40%), Gaps = 27/142 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++++ +  A V+DFG  +   +      L      + APE       + K DV+SFG++
Sbjct: 319 NVLVSEDNVAKVSDFGLTKEASSTQDTGKL---PVKWTAPEALREKKFSTKSDVWSFGIL 375

Query: 62  TLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDILLASTI 114
             E+   G+ P            P+I L DV+ +     ++  P      + D++     
Sbjct: 376 LWEIYSFGRVPY-----------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYDVMK---- 420

Query: 115 SFACLQSNPKSRPTMQYVSQEF 136
              C   +  +RPT   + ++ 
Sbjct: 421 --NCWHLDAATRPTFLQLREQL 440

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 31/140 (22%), Positives = 50/140 (35%), Gaps = 32/140 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N +L+      VADFG AR ++    +      T   +     A E   T   T K DV+
Sbjct: 222 NCMLDEKFTVKVADFGLARDMYDKEFDSVH-NKTGAKLPVKWMALESLQTQKFTTKSDVW 280

Query: 57  SFGVVTLEVLM-------GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDI 108
           SFGV+  E++          +  D+   L               +RL  P      + ++
Sbjct: 281 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQ------------GRRLLQPEYCPDPLYEV 328

Query: 109 LLASTISFACLQSNPKSRPT 128
           +L       C     + RP+
Sbjct: 329 ML------KCWHPKAEMRPS 342

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 56.2 bits (136), Expect = 4e-10
 Identities = 39/147 (26%), Positives = 57/147 (38%), Gaps = 31/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++++SNL   V+DFG +R+L  D         T G I     APE       +   DV+
Sbjct: 181 NVLVDSNLVCKVSDFGLSRVLEDDPD--AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVW 238

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGVV  EVL  G+ P              +   DV+       RLP P+     +  ++
Sbjct: 239 SFGVVMWEVLAYGERPY-----------WNMTNRDVISSVEEGYRLPAPMGCPHALHQLM 287

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
           L       C   +   RP    +    
Sbjct: 288 L------DCWHKDRAQRPRFSQIVSVL 308

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 38/165 (23%), Positives = 64/165 (38%), Gaps = 28/165 (16%)

Query: 2   NIILNSN-LEAFVADFGTARLLHADSSNRTL-----LAGTYGYIAPELAYTMVM----TE 51
           N++L+S+   A + DFG A  L  D   ++L     + GT  ++APE    +VM      
Sbjct: 180 NVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPE----VVMGKPCDA 235

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLA 111
           K D++S   + L +L G HP            P  + I       PPP+ +  I      
Sbjct: 236 KVDIWSSCCMMLHMLNGCHPWTQYFRG-----PLCLKI----ASEPPPIRE--IPPSCAP 284

Query: 112 STISF--ACLQSNPKSRPT-MQYVSQEFLITRKTPLVKHAAIQDI 153
            T       L+  P  R + M+   +     ++   +K     + 
Sbjct: 285 LTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEY 329

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 55.8 bits (135), Expect = 4e-10
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ LN +LE  + DFG A  +  D   + +L GT  YIAPE+      + + DV+S G +
Sbjct: 171 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCI 230

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIML--IDVLDQRLPPPVDQKVIQDILLASTISFACL 119
              +L+GK P +       +S  K     I   +  +P  ++       L+        L
Sbjct: 231 MYTLLVGKPPFE-------TSCLKETYLRIKKNEYSIPKHINPVAAS--LIQK-----ML 276

Query: 120 QSNPKSRPTMQ 130
           Q++P +RPT+ 
Sbjct: 277 QTDPTARPTIN 287

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 16/131 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ LN +LE  + DFG A  +  D   + +L GT  YIAPE+      + + DV+S G +
Sbjct: 145 NLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCI 204

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIML--IDVLDQRLPPPVDQKVIQDILLASTISFACL 119
              +L+GK P +       +S  K     I   +  +P  ++       L+        L
Sbjct: 205 MYTLLVGKPPFE-------TSCLKETYLRIKKNEYSIPKHINPVAAS--LIQK-----ML 250

Query: 120 QSNPKSRPTMQ 130
           Q++P +RPT+ 
Sbjct: 251 QTDPTARPTIN 261

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 55.6 bits (134), Expect = 5e-10
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 24/132 (18%)

Query: 13  VADFGTARLLHADSSNRTL--LAGTYGYIAPEL-----------AYTMVMTEKCDVYSFG 59
           + DFG A  +  D+++       G   Y+ PE                 ++ K DV+S G
Sbjct: 195 LIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLG 254

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFAC 118
            +   +  GK P   +     +   K+  I   +  +  P + +K +QD+L        C
Sbjct: 255 CILYYMTYGKTPFQQI----INQISKLHAIIDPNHEIEFPDIPEKDLQDVLK------CC 304

Query: 119 LQSNPKSRPTMQ 130
           L+ +PK R ++ 
Sbjct: 305 LKRDPKQRISIP 316

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 55.0 bits (133), Expect = 7e-10
 Identities = 31/148 (20%), Positives = 50/148 (33%), Gaps = 32/148 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N +L+      VADFG AR ++           T   +     A E   T   T K DV+
Sbjct: 158 NCMLDEKFTVKVADFGLARDMYDKEYYSVH-NKTGAKLPVKWMALESLQTQKFTTKSDVW 216

Query: 57  SFGVVTLEVLM-------GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDI 108
           SFGV+  E++          +  D+   L               +RL  P      + ++
Sbjct: 217 SFGVLLWELMTRGAPPYPDVNTFDITVYLLQ------------GRRLLQPEYCPDPLYEV 264

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEF 136
           +L       C     + RP+   +    
Sbjct: 265 ML------KCWHPKAEMRPSFSELVSRI 286

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI++ +     + DFG  ++L  D           G       APE       +   DV+
Sbjct: 144 NILVENENRVKIGDFGLTKVLPQDKEFFK--VKEPGESPIFWYAPESLTESKFSVASDVW 201

Query: 57  SFGVV-----TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVI 105
           SFGVV     T        P + +  + +    ++++  +++      RLP P      I
Sbjct: 202 SFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEI 261

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEF 136
             I+        C  +N   RP+ + ++   
Sbjct: 262 YMIMT------ECWNNNVNQRPSFRDLALRV 286

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 54.5 bits (132), Expect = 1e-09
 Identities = 28/147 (19%), Positives = 57/147 (38%), Gaps = 37/147 (25%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++++ +  A V+DFG  +   +            G +     APE       + K DV+
Sbjct: 147 NVLVSEDNVAKVSDFGLTKEASSTQDT--------GKLPVKWTAPEALREKKFSTKSDVW 198

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFG++  E+   G+ P            P+I L DV+ +     ++  P      + +++
Sbjct: 199 SFGILLWEIYSFGRVPY-----------PRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVM 247

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C   +   RP+   + ++ 
Sbjct: 248 K------NCWHLDAAMRPSFLQLREQL 268

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 55.1 bits (132), Expect = 1e-09
 Identities = 34/145 (23%), Positives = 50/145 (34%), Gaps = 18/145 (12%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI+L    +     + D G A+ L         + GT  Y+APEL      T   D +SF
Sbjct: 151 NIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFV-GTLQYLAPELLEQKKYTVTVDYWSF 209

Query: 59  GVVTLEVLMGK-------HPRDLLSSLSSSSDPKIMLIDVLDQR------LPPPVDQKVI 105
           G +  E + G         P      +   S+  I++ D L         LP P     I
Sbjct: 210 GTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGI 269

Query: 106 QDILLASTISFACLQSNPKSRPTMQ 130
               L   +    L  + + R T  
Sbjct: 270 LAGKLERWLQCM-LMWHQRQRGTDP 293

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 23/150 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++L+++    + DFG A+ +              G       APE           DV+
Sbjct: 164 NVLLDNDRLVKIGDFGLAKAVPEGHEYYR--VREDGDSPVFWYAPECLKEYKFYYASDVW 221

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSD---PKIMLIDVLD-----QRLPPPVD-QKVIQ 106
           SFGV   E+L      +   +           ++ ++ + +     +RLP P      + 
Sbjct: 222 SFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPAEVY 281

Query: 107 DILLASTISFACLQSNPKSRPTMQYVSQEF 136
            ++        C ++    RPT + +    
Sbjct: 282 HLMK------NCWETEASFRPTFENLIPIL 305

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 23/159 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA---------GTYGYIAPEL----AYTMV 48
           NI+L    +  + D G+                         T  Y APEL    ++ ++
Sbjct: 164 NILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVI 223

Query: 49  MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI 108
             E+ DV+S G V   ++ G+ P D++     S      +   +  +L  P   +     
Sbjct: 224 -DERTDVWSLGCVLYAMMFGEGPYDMVFQKGDS------VALAVQNQLSIPQSPRHSSA- 275

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKH 147
            L   ++ + +  +P  RP +  +  +    +     +H
Sbjct: 276 -LWQLLN-SMMTVDPHQRPHIPLLLSQLEALQPPAPGQH 312

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 32/148 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N +L+ +    VADFG AR +             +  +     A E   T   T K DV+
Sbjct: 154 NCMLDESFTVKVADFGLARDILDREYYSVQ-QHRHARLPVKWTALESLQTYRFTTKSDVW 212

Query: 57  SFGVVTLEVLM-------GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDI 108
           SFGV+  E+L           P DL   L+              +RLP P      +  +
Sbjct: 213 SFGVLLWELLTRGAPPYRHIDPFDLTHFLAQ------------GRRLPQPEYCPDSLYQV 260

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEF 136
           +        C +++P  RPT + +  E 
Sbjct: 261 MQ------QCWEADPAVRPTFRVLVGEV 282

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 24/151 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI++ +     + DFG  ++L  D           G       APE       +   DV+
Sbjct: 175 NILVENENRVKIGDFGLTKVLPQDKEYYK--VKEPGESPIFWYAPESLTESKFSVASDVW 232

Query: 57  SFGVV-----TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVI 105
           SFGVV     T        P + +  + +    ++++  +++      RLP P      I
Sbjct: 233 SFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPDEI 292

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEF 136
             I+        C  +N   RP+ + ++   
Sbjct: 293 YMIMT------ECWNNNVNQRPSFRDLALRV 317

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 53.7 bits (130), Expect = 2e-09
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 23/154 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L  N+   +ADFG A  L         L GT  YI+PE+A       + DV+S G +
Sbjct: 142 NLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCM 201

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIML--IDVLDQRLPPPVD---QKVIQDILLASTISF 116
              +L+G+ P D       +   K  L  + + D  +P  +    + +I  +        
Sbjct: 202 FYTLLIGRPPFD-------TDTVKNTLNKVVLADYEMPSFLSIEAKDLIHQL-------- 246

Query: 117 ACLQSNPKSRPTMQYVSQ-EFLITRKTPLVKHAA 149
             L+ NP  R ++  V    F+    +   K   
Sbjct: 247 --LRRNPADRLSLSSVLDHPFMSRNSSTKSKDEG 278

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 18/131 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L S  E  +ADFG +  +HA SS RT L GT  Y+ PE+    +  EK D++S GV+
Sbjct: 139 NLLLGSAGELKIADFGWS--VHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 196

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIML--IDVLDQRLPPPVDQKVIQDILLASTISFACL 119
             E L+GK P +       ++  +     I  ++   P  V +   +D++         L
Sbjct: 197 CYEFLVGKPPFE-------ANTYQETYKRISRVEFTFPDFVTEGA-RDLIS------RLL 242

Query: 120 QSNPKSRPTMQ 130
           + NP  RP ++
Sbjct: 243 KHNPSQRPMLR 253

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 33/147 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++++SN    + DFG +R +   +  +     + G +     APE       T   DV+
Sbjct: 146 NVLVSSNDCVKLGDFGLSRYMEDSTYYKA----SKGKLPIKWMAPESINFRRFTSASDVW 201

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
            FGV   E+LM G  P              +   DV+ +     RLP P +    +  ++
Sbjct: 202 MFGVCMWEILMHGVKPF-----------QGVKNNDVIGRIENGERLPMPPNCPPTLYSLM 250

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C   +P  RP    +  + 
Sbjct: 251 T------KCWAYDPSRRPRFTELKAQL 271

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 35/148 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD---SSNRTLLAGTYGYI---APELAYTMVMTEKCDV 55
           NI++ S     + DFG +R +  +    ++ T L      I   +PE       T   DV
Sbjct: 143 NILVASPECVKLGDFGLSRYIEDEDYYKASVTRLP-----IKWMSPESINFRRFTTASDV 197

Query: 56  YSFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           + F V   E+L  GK P   L +            DV+       RLP P     V+  +
Sbjct: 198 WMFAVCMWEILSFGKQPFFWLENK-----------DVIGVLEKGDRLPKPDLCPPVLYTL 246

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEF 136
           +        C   +P  RP    +    
Sbjct: 247 MT------RCWDYDPSDRPRFTELVCSL 268

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 53.7 bits (129), Expect = 3e-09
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 33/147 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++++SN    + DFG +R +   +  +     + G +     APE       T   DV+
Sbjct: 521 NVLVSSNDCVKLGDFGLSRYMEDSTYYKA----SKGKLPIKWMAPESINFRRFTSASDVW 576

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
            FGV   E+LM G  P              +   DV+ +     RLP P +    +  ++
Sbjct: 577 MFGVCMWEILMHGVKPF-----------QGVKNNDVIGRIENGERLPMPPNCPPTLYSLM 625

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C   +P  RP    +  + 
Sbjct: 626 T------KCWAYDPSRRPRFTELKAQL 646

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 25/124 (20%)

Query: 14  ADFGTARLLHADSSNRTLLAGTYGYIAPEL------AYTMVMTEKCDVYSFGVVTLEVLM 67
           +DFGT++ L   +       GT  Y+APE+       Y        D++S G   +E+  
Sbjct: 165 SDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGK----AADIWSLGCTIIEMAT 220

Query: 68  GKHP-RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF--ACLQSNPK 124
           GK P  +L    ++     +  + +      P      I + + A   +F   C + +P 
Sbjct: 221 GKPPFYELGEPQAA-----MFKVGMFKV--HPE-----IPESMSAEAKAFILKCFEPDPD 268

Query: 125 SRPT 128
            R  
Sbjct: 269 KRAC 272

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 52.5 bits (126), Expect = 6e-09
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 36/160 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++NS  E  + DFG +  L  DS   +   GT  Y++PE       + + D++S G+ 
Sbjct: 162 NILVNSRGEIKLCDFGVSGQL-IDSMANSF-VGTRSYMSPERLQGTHYSVQSDIWSMGLS 219

Query: 62  TLEVLMGKHP-------------------------------RDLLSSLSSSSDPKIMLID 90
            +E+ +G++P                                  L+     S P + + +
Sbjct: 220 LVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFE 279

Query: 91  VLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSRPT 128
           +LD     PPP     +  +     ++  CL  NP  R  
Sbjct: 280 LLDYIVNEPPPKLPSGVFSLEFQDFVN-KCLIKNPAERAD 318

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 26/161 (16%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ + E  +ADFG A  L      R    GT  ++APE+        K D++S G+ 
Sbjct: 149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 208

Query: 62  TLEVLMGKHPRDLLSSLSSSSDP--KIMLIDVLDQRLPPPVDQKVIQDILLASTISF--A 117
            +E+  G+ P        S   P   + LI     +  PP     ++         F  A
Sbjct: 209 AIELARGEPPH-------SELHPMKVLFLI----PKNNPP----TLEGNYSKPLKEFVEA 253

Query: 118 CLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQL 158
           CL   P  RPT    ++E L   K   +   A +   +++L
Sbjct: 254 CLNKEPSFRPT----AKELL---KHKFILRNAKKTSYLTEL 287

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 52.2 bits (125), Expect = 9e-09
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 24/126 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L    +  + D G    +++       L GT G+ APE+  T   T   D+Y+ G  
Sbjct: 212 NIMLTEE-QLKLIDLGAVSRINSFGY----LYGTPGFQAPEIVRTGP-TVATDIYTVGRT 265

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
              + +    R+             +  D    +      + + +            +  
Sbjct: 266 LAALTLDLPTRN-------GRYVDGLPEDDPVLKTYDSYGRLLRR-----------AIDP 307

Query: 122 NPKSRP 127
           +P+ R 
Sbjct: 308 DPRQRF 313

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 51.9 bits (124), Expect = 1e-08
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI+L+      + DFG AR ++ D             +     APE  +  V T + DV+
Sbjct: 223 NILLSEKNVVKICDFGLARDIYKDPDYV---RKGDARLPLKWMAPETIFDRVYTIQSDVW 279

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLAS 112
           SFGV+  E+  +G  P      +    +        L +  R+  P      +   +L  
Sbjct: 280 SFGVLLWEIFSLGASP---YPGVKIDEE----FCRRLKEGTRMRAPDYTTPEMYQTML-- 330

Query: 113 TISFACLQSNPKSRPTMQYVSQEF 136
                C    P  RPT   + +  
Sbjct: 331 ----DCWHGEPSQRPTFSELVEHL 350

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 43/167 (25%)

Query: 2   NIILNSNLEAFVADFG-----TARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE----- 51
           NI+L  +    +ADFG             +  R    GT  ++APE     VM +     
Sbjct: 151 NILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPE-----VMEQVRGYD 205

Query: 52  -KCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDP--KIMLIDVLDQRLPPPVDQKVIQDI 108
            K D++SFG+  +E+  G  P            P   +ML      +  PP  +  +QD 
Sbjct: 206 FKADIWSFGITAIELATGAAPY-------HKYPPMKVLMLT----LQNDPPSLETGVQDK 254

Query: 109 LLASTIS--F-----ACLQSNPKSRPTMQYVSQEFLITRKTPLVKHA 148
            +       F      CLQ +P+ RPT    + E L   +    + A
Sbjct: 255 EMLKKYGKSFRKMISLCLQKDPEKRPT----AAELL---RHKFFQKA 294

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 35/149 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++   L   ++D G  R ++A    +         +     APE       +   D++
Sbjct: 158 NVLVYDKLNVKISDLGLFREVYAADYYK---LLGNSLLPIRWMAPEAIMYGKFSIDSDIW 214

Query: 57  SFGVVTLEVLM-GKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDI 108
           S+GVV  EV   G  P      +D++  + +             Q LP P D    +  +
Sbjct: 215 SYGVVLWEVFSYGLQPYCGYSNQDVVEMIRN------------RQVLPCPDDCPAWVYAL 262

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEFL 137
           ++       C    P  RP  + +    L
Sbjct: 263 MI------ECWNEFPSRRPRFKDI-HSRL 284

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 39/136 (28%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDVYSFGVVTLEVL 66
           ++D G +  +                       PE +     +    D +SFG    E+ 
Sbjct: 162 LSDPGISITVLPKD---------ILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEIC 212

Query: 67  M-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVDQKVIQDILLASTISFACLQ 120
             G  P   LS+L S           L       +LP P   ++   I         C+ 
Sbjct: 213 SGGDKP---LSALDSQ--------RKLQFYEDRHQLPAPKAAELANLIN-------NCMD 254

Query: 121 SNPKSRPTMQYVSQEF 136
             P  RP+ + + ++ 
Sbjct: 255 YEPDHRPSFRAIIRDL 270

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDV 55
           N ++   L   + DFG +R +++    R    G    +      PE + Y    T + DV
Sbjct: 188 NCLVGQGLVVKIGDFGMSRDIYSTDYYR---VGGRTMLPIRWMPPESILYR-KFTTESDV 243

Query: 56  YSFGVVTLEVL-MGKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           +SFGVV  E+   GK P       + +  ++              + L  P      +  
Sbjct: 244 WSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQ------------GRELERPRACPPEVYA 291

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           I+        C Q  P+ R +++ V    
Sbjct: 292 IMR------GCWQREPQQRHSIKDVHARL 314

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 13  VADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH 70
           + D G +  +              T G+   E+        + D +        +L G +
Sbjct: 224 LIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTY 283

Query: 71  P 71
            
Sbjct: 284 M 284

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N +L  ++   VADFG ++ +++    R    G    +     A E     V T K DV+
Sbjct: 177 NCMLRDDMTVCVADFGLSKKIYSGDYYR---QGRIAKMPVKWIAIESLADRVYTSKSDVW 233

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           +FGV   E+   G  P            P +   ++ D      RL  P D    + +I+
Sbjct: 234 AFGVTMWEIATRGMTPY-----------PGVQNHEMYDYLLHGHRLKQPEDCLDELYEIM 282

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                  +C +++P  RPT   +  + 
Sbjct: 283 Y------SCWRTDPLDRPTFSVLRLQL 303

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 49.5 bits (119), Expect = 6e-08
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 37/157 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDV 55
           N ++ +NL   + DFG +R +++    R    G +  +      PE + Y    T + DV
Sbjct: 163 NCLVGANLLVKIGDFGMSRDVYSTDYYR---VGGHTMLPIRWMPPESIMYR-KFTTESDV 218

Query: 56  YSFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDI 108
           +SFGV+  E+   GK P             ++   +V++       L  P    K + D+
Sbjct: 219 WSFGVILWEIFTYGKQPW-----------FQLSNTEVIECITQGRVLERPRVCPKEVYDV 267

Query: 109 LLASTISFACLQSNPKSRPTMQYVSQEFL--ITRKTP 143
           +L       C Q  P+ R  ++ +  + L  + + TP
Sbjct: 268 ML------GCWQREPQQRLNIKEI-YKILHALGKATP 297

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N +L  ++   VADFG +R +++    R    G    +     A E     + T   DV+
Sbjct: 167 NCMLAEDMTVCVADFGLSRKIYSGDYYR---QGCASKLPVKWLALESLADNLYTVHSDVW 223

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           +FGV   E++  G+ P              I   ++ +      RL  P +  + + D++
Sbjct: 224 AFGVTMWEIMTRGQTPY-----------AGIENAEIYNYLIGGNRLKQPPECMEEVYDLM 272

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C  ++PK RP+   +  E 
Sbjct: 273 Y------QCWSADPKQRPSFTCLRMEL 293

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 24/158 (15%), Positives = 49/158 (31%), Gaps = 30/158 (18%)

Query: 2   NIILNSNLEAF----VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-------- 49
           NI+     +      + DFG AR L  D    +L  GT  Y+ P++    V+        
Sbjct: 142 NIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY-GTEEYLHPDMYERAVLRKDHQKKY 200

Query: 50  TEKCDVYSFGVVTLEVLMGKHP----------RDLLSSLSSSSDPKIMLIDVLDQRLPPP 99
               D++S GV       G  P          ++++  + +      +      +  P  
Sbjct: 201 GATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPID 260

Query: 100 VDQKVIQDILLASTISF-------ACLQSNPKSRPTMQ 130
               +     L+  +           L+++ +      
Sbjct: 261 WSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFD 298

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 49.1 bits (118), Expect = 9e-08
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+++    E  +ADFG +  +HA S  R  + GT  Y+ PE+       EK D++  GV+
Sbjct: 144 NLLMGYKGELKIADFGWS--VHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVL 201

Query: 62  TLEVLMGKHP 71
             E L+G  P
Sbjct: 202 CYEFLVGMPP 211

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 48.8 bits (117), Expect = 1e-07
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 20/149 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G++
Sbjct: 146 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIM 205

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF--ACL 119
            +E++ G+ P    + L +     + LI         P  Q    + L A    F   CL
Sbjct: 206 AIEMIEGEPPYLNENPLRA-----LYLI----ATNGTPELQN--PEKLSAIFRDFLNRCL 254

Query: 120 QSNPKSRPTMQYVSQEFLITRKTPLVKHA 148
           + + + R +    ++E L   +   +K A
Sbjct: 255 EMDVEKRGS----AKELL---QHQFLKIA 276

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 32/168 (19%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE-----KCDVY 56
           N++L  N E  + DFG +  L      R    GT  ++APE+       +     K D++
Sbjct: 159 NVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLW 218

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ-----KVIQDILLA 111
           S G+  +E+  G  P   +  + +     + LI     R P P  +     K  Q  +  
Sbjct: 219 SLGITAIEMAEGAPPLCDMHPMRA-----LFLI----PRNPAPRLKSKKWSKKFQSFIE- 268

Query: 112 STISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLR 159
                +CL  N   RP     +++ +   K P ++    +     QL+
Sbjct: 269 -----SCLVKNHSQRPA----TEQLM---KHPFIRDQPNERQVRIQLK 304

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           N++L S  +     + DFG + +   +        GT  YIAPE+    Y     EKCDV
Sbjct: 166 NLLLESKEKDALIKIVDFGLSAVFE-NQKKMKERLGTAYYIAPEVLRKKYD----EKCDV 220

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV+   +L G  P
Sbjct: 221 WSIGVILFILLAGYPP 236

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 20/149 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+LN+   A +ADFG A  L    + R  + GT  ++APE+   +      D++S G+ 
Sbjct: 155 NILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGIT 214

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF--ACL 119
            +E+  GK P   +  + +     I +I       PPP  +K   ++   +   F   CL
Sbjct: 215 AIEMAEGKPPYADIHPMRA-----IFMI----PTNPPPTFRK--PELWSDNFTDFVKQCL 263

Query: 120 QSNPKSRPTMQYVSQEFLITRKTPLVKHA 148
             +P+ R T    + + L   + P V+ A
Sbjct: 264 VKSPEQRAT----ATQLL---QHPFVRSA 285

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVM-----TEKCDV 55
           NI+L+ ++   + DFG +  L      R  + GT  Y+APE +  +M        ++ D+
Sbjct: 154 NILLDDDMNIKLTDFGFSCQLDPGEKLRE-VCGTPSYLAPEIIECSMNDNHPGYGKEVDM 212

Query: 56  YSFGVVT 62
           +S GV+ 
Sbjct: 213 WSTGVIM 219

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           NI+L +        + DFG +     D   R    GT  YIAPE+    Y     EKCDV
Sbjct: 176 NILLENKNSLLNIKIVDFGLSSFFSKDYKLRDR-LGTAYYIAPEVLKKKYN----EKCDV 230

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV+   +L G  P
Sbjct: 231 WSCGVIMYILLCGYPP 246

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 23/133 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVY----- 56
           NI+L+ +    + DF  A +L  ++   T+ AGT  Y+APE    M  + K   Y     
Sbjct: 145 NILLDEHGHVHITDFNIAAMLPRETQITTM-AGTKPYMAPE----MFSSRKGAGYSFAVD 199

Query: 57  --SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLAST 113
             S GV   E+L G+ P      + SS+  K ++       +  P    + +  +L    
Sbjct: 200 WWSLGVTAYELLRGRRPYH----IRSSTSSKEIVHTFETTVVTYPSAWSQEMVSLLK--- 252

Query: 114 ISFACLQSNPKSR 126
                L+ NP  R
Sbjct: 253 ---KLLEPNPDQR 262

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 47.9 bits (114), Expect = 3e-07
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 2   NIILNSNLEAF----VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-------- 49
           NI+     +      + DFG AR L  D    +L  GT  Y+ P++    V+        
Sbjct: 142 NIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLY-GTEEYLHPDMYERAVLRKDHQKKY 200

Query: 50  TEKCDVYSFGVVTLEVLMGKHP 71
               D++S GV       G  P
Sbjct: 201 GATVDLWSIGVTFYHAATGSLP 222

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           NI+L S  +     + DFG +     ++  +    GT  YIAPE+    Y     EKCDV
Sbjct: 151 NILLESKEKDCDIKIIDFGLSTCFQQNTKMKDR-IGTAYYIAPEVLRGTYD----EKCDV 205

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV+   +L G  P
Sbjct: 206 WSAGVILYILLSGTPP 221

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 35/151 (23%), Positives = 53/151 (35%), Gaps = 37/151 (24%)

Query: 2   NIILNSNLEAFV---ADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEK 52
           N +L       V    DFG AR ++  S  R    G    +      PE      + T K
Sbjct: 170 NCLLTCPGPGRVAKIGDFGMARDIYRASYYR---KGGCAMLPVKWMPPEAFMEG-IFTSK 225

Query: 53  CDVYSFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVI 105
            D +SFGV+  E+  +G  P            P     +VL+      R+ PP +    +
Sbjct: 226 TDTWSFGVLLWEIFSLGYMPY-----------PSKSNQEVLEFVTSGGRMDPPKNCPGPV 274

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEF 136
             I+        C Q  P+ RP    + +  
Sbjct: 275 YRIMT------QCWQHQPEDRPNFAIILERI 299

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           N++L S  +     + DFG +    A    +    GT  YIAPE+    Y     EKCDV
Sbjct: 156 NLLLESKSKDANIRIIDFGLSTHFEASKKMKDK-IGTAYYIAPEVLHGTYD----EKCDV 210

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV+   +L G  P
Sbjct: 211 WSTGVILYILLSGCPP 226

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N ++  +    + DFG  R ++     R    G  G +     +PE     V T   DV+
Sbjct: 168 NCMVAEDFTVKIGDFGMTRDIYETDYYR---KGGKGLLPVRWMSPESLKDGVFTTYSDVW 224

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGVV  E+    + P              +    VL        L  P +   ++ +++
Sbjct: 225 SFGVVLWEIATLAEQPY-----------QGLSNEQVLRFVMEGGLLDKPDNCPDMLFELM 273

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C Q NPK RP+   +    
Sbjct: 274 R------MCWQYNPKMRPSFLEIISSI 294

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++  +    +ADFG AR +H     +     T G +     APE  +  + T + DV+
Sbjct: 221 NVLVTEDNVMKIADFGLARDIHHIDYYK---KTTNGRLPVKWMAPEALFDRIYTHQSDVW 277

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGV+  E+  +G  P            P + + ++        R+  P +    +  ++
Sbjct: 278 SFGVLLWEIFTLGGSPY-----------PGVPVEELFKLLKEGHRMDKPSNCTNELYMMM 326

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C  + P  RPT + + ++ 
Sbjct: 327 R------DCWHAVPSQRPTFKQLVEDL 347

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 28/129 (21%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           +I+L  +    ++DFG    +  D   R  L GT  ++APE+    +   + D++S G++
Sbjct: 171 SILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIM 230

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF--ACL 119
            +E++ G+ P    S + +     +  +    +  PPP  +      +      F    L
Sbjct: 231 VIEMVDGEPPYFSDSPVQA-----MKRL----RDSPPPKLKN--SHKVSPVLRDFLERML 279

Query: 120 QSNPKSRPT 128
             +P+ R T
Sbjct: 280 VRDPQERAT 288

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 11/68 (16%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCD 54
           N++L S L+     +ADFG A  +  +       AGT GY++PE+     Y     +  D
Sbjct: 140 NLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPY----GKPVD 195

Query: 55  VYSFGVVT 62
           +++ GV+ 
Sbjct: 196 LWACGVIL 203

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 22/144 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE------KCDV 55
           NI+++ N    ++DFG +   +          GTY ++ PE        E      K D+
Sbjct: 182 NILMDKNGRVKLSDFGESE--YMVDKKIKGSRGTYEFMPPE----FFSNESSYNGAKVDI 235

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVL--DQRLPPPVDQKVIQDILLAST 113
           +S G+    +     P  L  SL    +  I   ++     R          +     + 
Sbjct: 236 WSLGICLYVMFYNVVPFSLKISLVELFN-NIRTKNIEYPLDRNHFLYPLTNKKSTCSNNF 294

Query: 114 ISFAC-------LQSNPKSRPTMQ 130
           +S          L+ NP  R T +
Sbjct: 295 LSNEDIDFLKLFLRKNPAERITSE 318

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 47.0 bits (112), Expect = 5e-07
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 37/158 (23%)

Query: 2   NIILNSNLEAFV---ADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEK 52
           N +L       V    DFG AR ++     R    G    +      PE      + T K
Sbjct: 211 NCLLTCPGPGRVAKIGDFGMARDIYRAGYYR---KGGCAMLPVKWMPPEAFMEG-IFTSK 266

Query: 53  CDVYSFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVI 105
            D +SFGV+  E+  +G  P            P     +VL+      R+ PP +    +
Sbjct: 267 TDTWSFGVLLWEIFSLGYMPY-----------PSKSNQEVLEFVTSGGRMDPPKNCPGPV 315

Query: 106 QDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
             I+        C Q  P+ RP    + +      + P
Sbjct: 316 YRIMT------QCWQHQPEDRPNFAIILERIEYCTQDP 347

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++  N    +ADFG AR ++     +     T G +     APE  +  V T + DV+
Sbjct: 187 NVLVTENNVMKIADFGLARDINNIDYYK---KTTNGRLPVKWMAPEALFDRVYTHQSDVW 243

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGV+  E+  +G  P            P I + ++        R+  P +    +  ++
Sbjct: 244 SFGVLMWEIFTLGGSPY-----------PGIPVEELFKLLKEGHRMDKPANCTNELYMMM 292

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C  + P  RPT + + ++ 
Sbjct: 293 R------DCWHAVPSQRPTFKQLVEDL 313

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 39/149 (26%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDV 55
           NI++  N  A +ADFG +R           +  T G +     A E L Y+ V T   DV
Sbjct: 172 NILVGENYVAKIADFGLSR------GQEVYVKKTMGRLPVRWMAIESLNYS-VYTTNSDV 224

Query: 56  YSFGVVTLEVL-MGKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           +S+GV+  E++ +G  P       +L   L                RL  P++    + D
Sbjct: 225 WSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQ------------GYRLEKPLNCDDEVYD 272

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           ++        C +  P  RP+   +    
Sbjct: 273 LMR------QCWREKPYERPSFAQILVSL 295

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 46.5 bits (111), Expect = 7e-07
 Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 25/144 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI+L       + DFG AR +  DS+           +     APE  +  V T + DV+
Sbjct: 175 NILLTHGRITKICDFGLARDIKNDSNYV---VKGNARLPVKWMAPESIFNCVYTFESDVW 231

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLAS 112
           S+G+   E+  +G  P      +   S        ++ +  R+  P      + DI+   
Sbjct: 232 SYGIFLWELFSLGSSP---YPGMPVDSK----FYKMIKEGFRMLSPEHAPAEMYDIMK-- 282

Query: 113 TISFACLQSNPKSRPTMQYVSQEF 136
                C  ++P  RPT + + Q  
Sbjct: 283 ----TCWDADPLKRPTFKQIVQLI 302

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 46.5 bits (111), Expect = 8e-07
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 25/144 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           NI+L+      + DFG AR ++ D             +     APE  +  V T + DV+
Sbjct: 178 NILLSEKNVVKICDFGLARDIYKDPDYV---RKGDARLPLKWMAPETIFDRVYTIQSDVW 234

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVD-QKVIQDILLAS 112
           SFGV+  E+  +G  P      +    +        L +  R+  P      +   +L  
Sbjct: 235 SFGVLLWEIFSLGASP---YPGVKIDEE----FCRRLKEGTRMRAPDYTTPEMYQTML-- 285

Query: 113 TISFACLQSNPKSRPTMQYVSQEF 136
                C    P  RPT   + +  
Sbjct: 286 ----DCWHGEPSQRPTFSELVEHL 305

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           NI+L S  +     + DFG +     ++  +    GT  YIAPE+    Y     EKCDV
Sbjct: 151 NILLESKEKDCDIKIIDFGLSTCFQQNTKMKDR-IGTAYYIAPEVLRGTY----DEKCDV 205

Query: 56  YSFGVVT 62
           +S GV+ 
Sbjct: 206 WSAGVIL 212

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 46.1 bits (110), Expect = 9e-07
 Identities = 33/149 (22%), Positives = 54/149 (36%), Gaps = 35/149 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N++L +   A + DFG AR +  DS+           +     APE  +  V T + DV+
Sbjct: 194 NVLLTNGHVAKIGDFGLARDIMNDSNYI---VKGNARLPVKWMAPESIFDCVYTVQSDVW 250

Query: 57  SFGVVTLEVL-MGKHP-------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           S+G++  E+  +G +P             +                ++  P    K I  
Sbjct: 251 SYGILLWEIFSLGLNPYPGILVNSKFYKLVKDG------------YQMAQPAFAPKNIYS 298

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           I+       AC    P  RPT Q +    
Sbjct: 299 IMQ------ACWALEPTHRPTFQQICSFL 321

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEK-----CDV 55
           NI+L+ N++  ++DFG +  L      R  L GT GY+APE L  +M  T        D+
Sbjct: 230 NILLDDNMQIRLSDFGFSCHLEPGEKLRE-LCGTPGYLAPEILKCSMDETHPGYGKEVDL 288

Query: 56  YSFGVVT 62
           ++ GV+ 
Sbjct: 289 WACGVIL 295

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 16/82 (19%)

Query: 2   NIILNSNLEAFV--ADFGTARLLHADSSNR----TLLAGTYGYIAPEL------AYTMVM 49
           N + ++N    +   DFG ++  +  ++      T  AGT  ++APE+      +Y    
Sbjct: 198 NFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYG--- 254

Query: 50  TEKCDVYSFGVVTLEVLMGKHP 71
             KCD +S GV+   +LMG  P
Sbjct: 255 -PKCDAWSAGVLLHLLLMGAVP 275

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 32/147 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++  N    +ADFG AR ++     +     T G +     APE  +  V T + DV+
Sbjct: 233 NVLVTENNVMKIADFGLARDINNIDYYK---KTTNGRLPVKWMAPEALFDRVYTHQSDVW 289

Query: 57  SFGVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQ-----RLPPPVD-QKVIQDIL 109
           SFGV+  E+  +G  P            P I + ++        R+  P +    +  ++
Sbjct: 290 SFGVLMWEIFTLGGSPY-----------PGIPVEELFKLLKEGHRMDKPANCTNELYMMM 338

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                   C  + P  RPT + + ++ 
Sbjct: 339 R------DCWHAVPSQRPTFKQLVEDL 359

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYS 57
           NI+L+S        + DFG +R +      R ++ GT  Y+APE L Y  + T   D+++
Sbjct: 161 NILLSSIYPLGDIKIVDFGMSRKIGHACELREIM-GTPEYLAPEILNYDPI-TTATDMWN 218

Query: 58  FGVVT 62
            G++ 
Sbjct: 219 IGIIA 223

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 2   NIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSF 58
           NI+  +   + V   DFG A  L+ D   +     T  + APE +    V     D+++ 
Sbjct: 179 NIMCETKKASSVKIIDFGLATKLNPDEIVKVT-TATAEFAAPEIVDREPV-GFYTDMWAI 236

Query: 59  GVVTLEVLMGKHP 71
           GV+   +L G  P
Sbjct: 237 GVLGYVLLSGLSP 249

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCD 54
           N++L S  +     +ADFG A  ++   +     AGT GY++PE+     Y    ++  D
Sbjct: 135 NLLLASKAKGAAVKLADFGLAIEVNDSEAWHGF-AGTPGYLSPEVLKKDPY----SKPVD 189

Query: 55  VYSFGVVT 62
           +++ GV+ 
Sbjct: 190 IWACGVIL 197

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVT 62
           +ADFG ++++      +T+  GT GY APE+        + D++S G++T
Sbjct: 192 IADFGLSKIVEHQVLMKTV-CGTPGYCAPEILRGCAYGPEVDMWSVGIIT 240

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVYSFGVVT 62
           + DFG A+ L A++        T  ++APE+     Y       CD++S GV+ 
Sbjct: 161 ICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGY----DAACDIWSLGVLL 210

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 26/149 (17%), Positives = 56/149 (37%), Gaps = 35/149 (23%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APELAYTMVMTEKCDVY 56
           N+++       + DFG AR + +DS+           +     APE  +  + T K DV+
Sbjct: 202 NVLVTHGKVVKICDFGLARDIMSDSNYV---VRGNARLPVKWMAPESLFEGIYTIKSDVW 258

Query: 57  SFGVVTLEVL-MGKHP-------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           S+G++  E+  +G +P        +    + +              ++  P    + I  
Sbjct: 259 SYGILLWEIFSLGVNPYPGIPVDANFYKLIQNG------------FKMDQPFYATEEIYI 306

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           I+       +C   + + RP+   ++   
Sbjct: 307 IMQ------SCWAFDSRKRPSFPNLTSFL 329

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 28/134 (20%), Positives = 52/134 (38%), Gaps = 18/134 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE-----KCDVY 56
           N+++    +  +ADFG +         R    GT  ++APE+     M +     K D++
Sbjct: 147 NVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIW 206

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF 116
           S G+  +E+   + P   L+ +       ++ I     +  PP                F
Sbjct: 207 SLGITLIEMAQIEPPHHELNPMRV-----LLKI----AKSDPPTLLT--PSKWSVEFRDF 255

Query: 117 --ACLQSNPKSRPT 128
               L  NP++RP+
Sbjct: 256 LKIALDKNPETRPS 269

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 19/116 (16%)

Query: 14  ADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGVVTLEVLMGKHPR 72
            D G    +    S+  +  G   ++A E L        K D+++  +  +     +   
Sbjct: 176 GDLGHVTRI----SSPQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLP 231

Query: 73  DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT 128
                       +I       Q   P + Q + Q+      +    +  +P+ RP+
Sbjct: 232 RNGDQWH-----EIR------QGRLPRIPQVLSQE--FTELLK-VMIHPDPERRPS 273

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVM--TEKCDV 55
           N++L+S  E     + DFG +++L   S  RTL  GT  Y+APE L            D 
Sbjct: 144 NVLLSSQEEDCLIKITDFGHSKILGETSLMRTL-CGTPTYLAPEVLVSVGTAGYNRAVDC 202

Query: 56  YSFGVVT 62
           +S GV+ 
Sbjct: 203 WSLGVIL 209

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCD 54
           N++L S  +     +ADFG A  ++   +     AGT GY++PE+     Y    ++  D
Sbjct: 158 NLLLASKAKGAAVKLADFGLAIEVNDSEAWHGF-AGTPGYLSPEVLKKDPY----SKPVD 212

Query: 55  VYSFGVVT 62
           +++ GV+ 
Sbjct: 213 IWACGVIL 220

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVM--TEKCDV 55
           N++L+S  E     + DFG +++L   S  RTL  GT  Y+APE L            D 
Sbjct: 269 NVLLSSQEEDCLIKITDFGHSKILGETSLMRTL-CGTPTYLAPEVLVSVGTAGYNRAVDC 327

Query: 56  YSFGVVT 62
           +S GV+ 
Sbjct: 328 WSLGVIL 334

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            ++L S   +    +  FG A  L           GT  ++APE+       +  DV+  
Sbjct: 160 CVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGC 219

Query: 59  GVVT 62
           GV+ 
Sbjct: 220 GVIL 223

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           N +  ++       + DFG A         RT   GT  Y++P++    Y      +CD 
Sbjct: 136 NFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTK-VGTPYYVSPQVLEGLY----GPECDE 190

Query: 56  YSFGVVT 62
           +S GV+ 
Sbjct: 191 WSAGVMM 197

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 44.5 bits (106), Expect = 4e-06
 Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 36/149 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDV 55
           NI++    +  ++DFG +R ++ + S       + G I     A E L    + T + DV
Sbjct: 180 NILVAEGRKMKISDFGLSRDVYEEDSYV---KRSQGRIPVKWMAIESLFDH-IYTTQSDV 235

Query: 56  YSFGVVTLEVLM-------GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           +SFGV+  E++        G  P  L + L +              R+  P +  + +  
Sbjct: 236 WSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTG------------HRMERPDNCSEEMYR 283

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           ++L       C +  P  RP    +S++ 
Sbjct: 284 LML------QCWKQEPDKRPVFADISKDL 306

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 2   NIILNSNLEAF---VADFGTARLLHADSSNRTLLAGTYGYIAPEL---AYTMVMTEKCDV 55
           NI+           + DFG A L  +D  +    AGT  Y+APE+     T     KCD+
Sbjct: 154 NILFQDTSPHSPIKIIDFGLAELFKSDEHSTNA-AGTALYMAPEVFKRDVT----FKCDI 208

Query: 56  YSFGVVT 62
           +S GVV 
Sbjct: 209 WSAGVVM 215

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 2   NIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSF 58
           NI+  +     +   DFG AR        +    GT  ++APE + Y  V +   D++S 
Sbjct: 217 NILCVNRDAKQIKIIDFGLARRYKPREKLKVNF-GTPEFLAPEVVNYDFV-SFPTDMWSV 274

Query: 59  GVVT 62
           GV+ 
Sbjct: 275 GVIA 278

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTEK-----CDV 55
           NI+++ N    +ADFG+   L  D + ++ +A GT  YI+PE+   M   +      CD 
Sbjct: 205 NILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDW 264

Query: 56  YSFGVVTLEVLMGKHP 71
           +S GV   E+L G+ P
Sbjct: 265 WSLGVCMYEMLYGETP 280

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGVVT 62
           + DFG A  +      + +  GT  ++APE + Y  +   + D++S GV+T
Sbjct: 160 LIDFGLAHEIEDGVEFKNI-FGTPEFVAPEIVNYEPL-GLEADMWSIGVIT 208

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 29/157 (18%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA------------GTYGYIAPELAYTM-- 47
           N++L++     + DFG+A  +                        T  Y  PE+      
Sbjct: 168 NLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSN 227

Query: 48  -VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQ 106
             + EK D+++ G +   +   +HP +  + L            +++ +   P       
Sbjct: 228 FPIGEKQDIWALGCILYLLCFRQHPFEDGAKLR-----------IVNGKYSIPPHDTQYT 276

Query: 107 DILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP 143
                S I    LQ NP+ R ++  V  +        
Sbjct: 277 V--FHSLIRA-MLQVNPEERLSIAEVVHQLQEIAAAR 310

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 2   NIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSF 58
           NI+  +     +   DFG    L    S +    GT  + APE      V     D++S 
Sbjct: 285 NIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTT-GTAEFAAPEVAEGKPV-GYYTDMWSV 342

Query: 59  GVVTLEVLMGKHP 71
           GV++  +L G  P
Sbjct: 343 GVLSYILLSGLSP 355

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVYSFGVVT 62
           + DFG ARL   D+        T  Y APEL     Y     E CD++S GV+ 
Sbjct: 150 IIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGY----DESCDLWSLGVIL 199

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVT 62
           + DFG +++    +   +   GT GY+APE+      ++  D +S GV+T
Sbjct: 150 ITDFGLSKME--QNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIT 197

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGVVT 62
           + DFG A  + A +  + +  GT  ++APE + Y  +   + D++S GV+T
Sbjct: 153 LIDFGIAHKIEAGNEFKNI-FGTPEFVAPEIVNYEPL-GLEADMWSIGVIT 201

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 21/175 (12%), Positives = 60/175 (34%), Gaps = 53/175 (30%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLL-------AGTYGYIAPELAYTMVMTE--- 51
           +I+++ + + +++   +   + +    + ++            +++PE     V+ +   
Sbjct: 158 HILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPE-----VLQQNLQ 212

Query: 52  ----KCDVYSFGVVTLEVLMGK------HPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD 101
               K D+YS G+   E+  G           +L    + + P ++    +         
Sbjct: 213 GYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSP 272

Query: 102 QKVIQDILLASTISFA----------------------------CLQSNPKSRPT 128
            + + +  L+ +++ +                            CLQ NP +RP+
Sbjct: 273 SRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPS 327

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 2   NIILNSNLEAF----VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVY 56
           NI+L           + DFG A  +      + +  GT  ++APE + Y  +   + D++
Sbjct: 145 NIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIF-GTPEFVAPEIVNYEPL-GLEADMW 202

Query: 57  SFGVVT 62
           S GV+T
Sbjct: 203 SIGVIT 208

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 42.6 bits (101), Expect = 1e-05
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGVVT 62
           + DFG A  +   +  + +  GT  ++APE + Y  +   + D++S GV+T
Sbjct: 159 IIDFGLAHKIDFGNEFKNI-FGTPEFVAPEIVNYEPL-GLEADMWSIGVIT 207

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 8/78 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVMTEK-------C 53
           NI+L+      +ADFG+   L AD + R+L+A GT  Y++PE+   +            C
Sbjct: 192 NILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPEC 251

Query: 54  DVYSFGVVTLEVLMGKHP 71
           D ++ GV   E+  G+ P
Sbjct: 252 DWWALGVFAYEMFYGQTP 269

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 34/155 (21%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE---KCDVYSF 58
           NI+L+      + DFG+A    +  +      GT  ++APE+   M   +   K DV+S 
Sbjct: 184 NILLSEPGLVKLGDFGSA----SIMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSL 239

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ-----KVIQDILLAST 113
           G+  +E+   K P   ++++S+     +  I     +   P  Q     +  ++ +    
Sbjct: 240 GITCIELAERKPPLFNMNAMSA-----LYHI----AQNESPALQSGHWSEYFRNFVD--- 287

Query: 114 ISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHA 148
              +CLQ  P+ RPT    S+  L   K   V   
Sbjct: 288 ---SCLQKIPQDRPT----SEVLL---KHRFVLRE 312

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 36/149 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYI-----APE-LAYTMVMTEKCDV 55
           N ++  N+   +ADFG +R +++    +   A     I      PE + Y    T + DV
Sbjct: 204 NCLVGENMVVKIADFGLSRNIYSADYYK---ADGNDAIPIRWMPPESIFYN-RYTTESDV 259

Query: 56  YSFGVVTLEVL-MGKHP------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQD 107
           +++GVV  E+   G  P       +++  +                 L  P +    + +
Sbjct: 260 WAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDG------------NILACPENCPLELYN 307

Query: 108 ILLASTISFACLQSNPKSRPTMQYVSQEF 136
           ++        C    P  RP+   + +  
Sbjct: 308 LMR------LCWSKLPADRPSFCSIHRIL 330

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 2   NIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSF 58
           NII  +   + +   +FG AR L    + R L      Y APE   + +V +   D++S 
Sbjct: 132 NIIYQTRRSSTIKIIEFGQARQLKPGDNFRLL-FTAPEYYAPEVHQHDVV-STATDMWSL 189

Query: 59  GVVTLEVLMGKHP 71
           G +   +L G +P
Sbjct: 190 GTLVYVLLSGINP 202

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 30/135 (22%)

Query: 2   NIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
           NI+++     A + DFG+  LLH D        GT  Y  PE      Y         V+
Sbjct: 169 NILIDLRRGCAKLIDFGSGALLH-DEPYTDF-DGTRVYSPPEWISRHQYH---ALPATVW 223

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTIS 115
           S G++ L  ++ G  P +         D +I+  ++     P  V        L+     
Sbjct: 224 SLGIL-LYDMVCGDIPFE--------RDQEILEAEL---HFPAHVSPDCCA--LIRR--- 266

Query: 116 FACLQSNPKSRPTMQ 130
             CL   P SRP+++
Sbjct: 267 --CLAPKPSSRPSLE 279

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++ S+    + DFG AR     S   T    T  Y APE+   M   E  D++S G +
Sbjct: 157 NIVVKSDCTLKILDFGLARTA-GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCI 215

Query: 62  TLEVLMGK 69
             E++ G 
Sbjct: 216 MGEMIKGG 223

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L+ +    ++D G A  +    + +    GT GY+APE+      T   D ++ G +
Sbjct: 316 NILLDDHGHIRISDLGLAVHVPEGQTIKGR-VGTVGYMAPEVVKNERYTFSPDWWALGCL 374

Query: 62  TLEVLMGKHP 71
             E++ G+ P
Sbjct: 375 LYEMIAGQSP 384

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVYSFGVVT 62
           + DFG A+   + +S  T    T  Y+APE+     Y     + CD++S GV+ 
Sbjct: 205 LTDFGFAKETTSHNSLTTP-CYTPYYVAPEVLGPEKY----DKSCDMWSLGVIM 253

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN-RTL-LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+LN ++   + DFGTA++L  +S   R     GT  Y++PEL       +  D+++ G
Sbjct: 160 NILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALG 219

Query: 60  VVTLEVLMGKHP 71
            +  +++ G  P
Sbjct: 220 CIIYQLVAGLPP 231

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 40.5 bits (95), Expect = 9e-05
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRT-LLAGTYGYIAPEL----AYTMVMTEKCDVY 56
           N++L+ +    +ADFGT   ++ +   R     GT  YI+PE+            +CD +
Sbjct: 198 NMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWW 257

Query: 57  SFGVVTLEVLMGKHP 71
           S GV   E+L+G  P
Sbjct: 258 SVGVFLYEMLVGDTP 272

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 30/135 (22%)

Query: 2   NIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVY 56
           NI+++ N  E  + DFG+  LL  D+       GT  Y  PE      Y         V+
Sbjct: 179 NILIDLNRGELKLIDFGSGALLK-DTVYTDF-DGTRVYSPPEWIRYHRYH---GRSAAVW 233

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTIS 115
           S G++ L  ++ G  P +         D +I+   V        V  +     L+     
Sbjct: 234 SLGIL-LYDMVCGDIPFE--------HDEEIIRGQV---FFRQRVSSECQH--LIRW--- 276

Query: 116 FACLQSNPKSRPTMQ 130
             CL   P  RPT +
Sbjct: 277 --CLALRPSDRPTFE 289

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGV 60
           NI+L+ +    ++D G A        +     GT+GY+APE L   +      D +S G 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHA--SVGTHGYMAPEVLQKGVAYDSSADWFSLGC 379

Query: 61  VTLEVLMGKHP 71
           +  ++L G  P
Sbjct: 380 MLFKLLRGHSP 390

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/70 (28%), Positives = 34/70 (48%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ +    ++D G A  L A  +     AGT G++APEL          D ++ GV 
Sbjct: 319 NVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVT 378

Query: 62  TLEVLMGKHP 71
             E++  + P
Sbjct: 379 LYEMIAARGP 388

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++ S+    + DFG AR     S   T    T  Y APE+   M   E  D++S G +
Sbjct: 194 NIVVKSDCTLKILDFGLARTA-GTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCI 252

Query: 62  TLEVLMGK 69
             E++  K
Sbjct: 253 MGEMVRHK 260

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAG---TYGYIAPELAYT-MVMTEKCDVYS 57
           N++LN+  +  + DFG AR+   D  +   L     T  Y APE+       T+  D++S
Sbjct: 158 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217

Query: 58  FGVVTLEVLMGK 69
            G +  E+L  +
Sbjct: 218 VGCILAEMLSNR 229

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 36/145 (24%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPEL----AYTMVMTEKCDVYS 57
           N++L++++   +ADFG +              G   Y APEL     Y      + DV+S
Sbjct: 144 NLLLDADMNIKIADFGFSNEFTVGGKLDA-FCGAPPYAAPELFQGKKYD---GPEVDVWS 199

Query: 58  FGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISF 116
            GV+ L  L+ G  P D         + K +   VL  +   P              +S 
Sbjct: 200 LGVI-LYTLVSGSLPFD-------GQNLKELRERVLRGKYRIP------------FYMST 239

Query: 117 AC-------LQSNPKSRPTMQYVSQ 134
            C       L  NP  R T++ + +
Sbjct: 240 DCENLLKRFLVLNPIKRGTLEQIMK 264

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVT 62
           + DFG A+      +       T  Y+APE+       + CD++S GV+ 
Sbjct: 172 LTDFGFAKET--TQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIM 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.98
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.98
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.97
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.97
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.96
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.96
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.96
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.96
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.96
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.95
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.95
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.95
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.94
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.94
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.93
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.93
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.93
3niz_A	311	Rhodanese family protein; structural genomics, str	99.93
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.93
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.93
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.93
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.93
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.93
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.93
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.93
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.93
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.92
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.92
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.92
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.92
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.92
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.92
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.92
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.92
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.92
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.92
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.92
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.92
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.92
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.92
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.92
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.92
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.92
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.92
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.92
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.92
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.92
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.92
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.92
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.92
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.92
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.92
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.91
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.91
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.91
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.91
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.91
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.91
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.91
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.91
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.91
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.91
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.91
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.91
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.91
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.91
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.91
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.91
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.91
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.91
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.91
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.91
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.91
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.91
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.91
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.91
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.91
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.91
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.91
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.91
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.91
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.91
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.91
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.91
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.91
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.91
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.91
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.91
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.91
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.91
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.9
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.9
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.9
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.9
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.9
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.9
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.9
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.9
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.9
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.9
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.9
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.9
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.9
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.9
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.9
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.9
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.9
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.9
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.9
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.9
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.9
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.9
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.9
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.9
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.9
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.9
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.9
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.9
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.9
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.9
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.9
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.9
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.9
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.9
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.9
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.9
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.9
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.9
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.9
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.89
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.89
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.89
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.89
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.89
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.89
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.89
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.89
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.89
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.89
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.89
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.89
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.89
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.89
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.89
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.89
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.89
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.89
3bhy_A	283	Death-associated protein kinase 3; death associate	99.89
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.89
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.89
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.89
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.89
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.89
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.89
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.89
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.89
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.89
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.89
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.89
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.89
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.88
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.88
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.88
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.88
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.88
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.88
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.88
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.88
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.88
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.88
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.88
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.88
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.88
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.88
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.88
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.88
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.88
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.88
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.88
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.88
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.88
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.88
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.88
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.88
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.88
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.87
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.87
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.87
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.87
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.87
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.87
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.87
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.87
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.87
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.87
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.87
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.87
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.87
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.87
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.87
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.87
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.87
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.87
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.87
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.87
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.87
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.87
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.87
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.87
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.87
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.86
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.86
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.86
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.86
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.86
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.86
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.86
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.86
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.86
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.86
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.86
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.86
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.86
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.86
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.85
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.85
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.85
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.85
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.85
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.85
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.85
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.85
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.85
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.84
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.84
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.84
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.84
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.83
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.83
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.8
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.79
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.76
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.72
3uqc_A	286	Probable conserved transmembrane protein; structur	99.53
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.22
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	98.32
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	94.93
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	91.71
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	80.6

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9e-34  Score=193.93  Aligned_cols=135  Identities=21%  Similarity=0.321  Sum_probs=103.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.+........+.+||+.|+|||++.+..++.++||||+||++|+|++|.+||...     
T Consensus       199 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~-----  273 (346)
T 4fih_A          199 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE-----  273 (346)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----
T ss_pred             HHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc-----
Confidence            599999999999999999998766555556788999999999999888999999999999999999999999622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                        ........ +....++.... .......+.+|+.+||+.||++|||++++++|+|+.+..+.
T Consensus       274 --~~~~~~~~-i~~~~~~~~~~-~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~~p  333 (346)
T 4fih_A          274 --PPLKAMKM-IRDNLPPRLKN-LHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGPP  333 (346)
T ss_dssp             --CHHHHHHH-HHHSSCCCCSC-GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCG
T ss_pred             --CHHHHHHH-HHcCCCCCCCc-cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCCCC
Confidence              22222222 22222221110 11122345789999999999999999999999999976543

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.98  E-value=6.7e-33  Score=193.86  Aligned_cols=134  Identities=21%  Similarity=0.331  Sum_probs=102.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.+........+.+||+.|+|||++.+..++.++||||+||++|+|++|.+||....    
T Consensus       276 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~----  351 (423)
T 4fie_A          276 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEP----  351 (423)
T ss_dssp             TTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----
T ss_pred             HHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC----
Confidence            6999999999999999999987665555567889999999999999889999999999999999999999996222    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                         ....... +....++.... .......+.+|+.+||..||++|||++++++|+|+.+..+
T Consensus       352 ---~~~~~~~-i~~~~~~~~~~-~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~~~  409 (423)
T 4fie_A          352 ---PLKAMKM-IRDNLPPRLKN-LHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAGP  409 (423)
T ss_dssp             ---HHHHHHH-HHHSCCCCCSC-TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             ---HHHHHHH-HHcCCCCCCcc-cccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCCCC
Confidence               2222222 22222211110 0111223578999999999999999999999999997554

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.98  E-value=8.1e-34  Score=194.42  Aligned_cols=131  Identities=23%  Similarity=0.405  Sum_probs=102.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.+..........+||+.|+|||++.+..++.++||||+||++|+|++|.+||..      
T Consensus       154 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~------  227 (350)
T 4b9d_A          154 QNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEA------  227 (350)
T ss_dssp             GGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCC------
T ss_pred             HHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC------
Confidence            59999999999999999998765433333456799999999999998899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                       ...............++ .+....   ..+.+|+.+||+.||++|||++++++|+|+.+..
T Consensus       228 -~~~~~~~~~i~~~~~~~-~~~~~s---~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~~  284 (350)
T 4b9d_A          228 -GSMKNLVLKIISGSFPP-VSLHYS---YDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRI  284 (350)
T ss_dssp             -SSHHHHHHHHHHTCCCC-CCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTTG
T ss_pred             -cCHHHHHHHHHcCCCCC-CCccCC---HHHHHHHHHHccCChhHCcCHHHHhcCHHhhcCC
Confidence             22333444444443322 222221   2357899999999999999999999999998754

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.97  E-value=1.7e-32  Score=185.07  Aligned_cols=129  Identities=24%  Similarity=0.339  Sum_probs=98.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++..........+.+||+.|+|||++.+..++.++|+||+||++|+|++|.+||..      
T Consensus       155 ~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~------  228 (304)
T 3ubd_A          155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQG------  228 (304)
T ss_dssp             GGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             HHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCC------
Confidence            59999999999999999998765544445567899999999999998899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~~  141 (160)
                       ..............+..+.  ..   ...+.+|+.+||+.||++|||     ++++++|+||...
T Consensus       229 -~~~~~~~~~i~~~~~~~p~--~~---s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~i  288 (304)
T 3ubd_A          229 -KDRKETMTMILKAKLGMPQ--FL---SPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTI  288 (304)
T ss_dssp             -SSHHHHHHHHHHCCCCCCT--TS---CHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTC
T ss_pred             -cCHHHHHHHHHcCCCCCCC--cC---CHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCC
Confidence             2233333343444333221  11   123578999999999999998     5899999999863

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.97  E-value=1.9e-32  Score=183.88  Aligned_cols=128  Identities=23%  Similarity=0.350  Sum_probs=93.7

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||+++ +|.+||+|||+++....  ....+.+||+.|+|||++.+ .++.++||||+||++|+|++|.+||...    
T Consensus       160 ~NILl~~~~g~vKl~DFGla~~~~~--~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~----  232 (290)
T 3fpq_A          160 DNIFITGPTGSVKIGDLGLATLKRA--SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----  232 (290)
T ss_dssp             GGEEESSTTSCEEECCTTGGGGCCT--TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----
T ss_pred             hheeEECCCCCEEEEeCcCCEeCCC--CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC----
Confidence            5999985 79999999999985432  23345689999999998865 5899999999999999999999999622    


Q ss_pred             CCCCchhhHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 SSSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         .....+...+.... +...+...   ...+.+|+.+||+.||++|||++++++|+|++++
T Consensus       233 ---~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~~  289 (290)
T 3fpq_A          233 ---QNAAQIYRRVTSGVKPASFDKVA---IPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             ---SSHHHHHHHHTTTCCCGGGGGCC---CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             ---CcHHHHHHHHHcCCCCCCCCccC---CHHHHHHHHHHccCChhHCcCHHHHhcCccccCC
Confidence               12222222222222 22111111   1235789999999999999999999999999764

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.97  E-value=5.1e-32  Score=180.48  Aligned_cols=129  Identities=21%  Similarity=0.300  Sum_probs=89.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++..... ....+..||+.|+|||++.+..+ +.++||||+||++|+|++|.+||..     
T Consensus       141 ~NILl~~~~~vkl~DFGla~~~~~~-~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~-----  214 (275)
T 3hyh_A          141 ENLLLDEHLNVKIADFGLSNIMTDG-NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDD-----  214 (275)
T ss_dssp             TTEEECTTCCEEECCSSCC----------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCC-----
T ss_pred             HHeEECCCCCEEEeecCCCeecCCC-CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCC-----
Confidence            6999999999999999999865433 23345679999999999988776 5789999999999999999999962     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        .................+  ...   ...+.+|+.+||+.||++|||++++++|+|++...
T Consensus       215 --~~~~~~~~~i~~~~~~~p--~~~---s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~~~  270 (275)
T 3hyh_A          215 --ESIPVLFKNISNGVYTLP--KFL---SPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKVDL  270 (275)
T ss_dssp             --SSHHHHHHHHHHTCCCCC--TTS---CHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHTTC
T ss_pred             --CCHHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHccCChhHCcCHHHHHcCcccccCC
Confidence              222233333333333222  111   12357899999999999999999999999998654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.97  E-value=5e-32  Score=182.94  Aligned_cols=128  Identities=20%  Similarity=0.377  Sum_probs=98.7

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++.+....  ....+.+||+.|+|||++.+..++.++||||+||++|+|++|.+||..    
T Consensus       161 eNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~----  236 (311)
T 4aw0_A          161 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA----  236 (311)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCC----
T ss_pred             HHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC----
Confidence            69999999999999999999765332  234557899999999999998899999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHH------HHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQY------VSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~------~~~~~~~~~  140 (160)
                         ..............+..+  ...   ...+++|+.+||+.||++|||++|      +++|+||..
T Consensus       237 ---~~~~~~~~~i~~~~~~~p--~~~---s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~  296 (311)
T 4aw0_A          237 ---GNEGLIFAKIIKLEYDFP--EKF---FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFES  296 (311)
T ss_dssp             ---SSHHHHHHHHHHTCCCCC--TTC---CHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTT
T ss_pred             ---CCHHHHHHHHHcCCCCCC--ccc---CHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCC
Confidence               223333344444333222  111   123578999999999999999987      577888875

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=4.6e-31  Score=178.38  Aligned_cols=130  Identities=22%  Similarity=0.359  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||+++++.+||+|||+++......  .......||+.|+|||++.+   +.++.++||||+||++|||++|+.||...
T Consensus       161 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~  240 (307)
T 3omv_A          161 NNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI  240 (307)
T ss_dssp             SSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             HHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC
Confidence            69999999999999999998654321  22344679999999999864   34788999999999999999999999622


Q ss_pred             cccCCCCCchhhHHHhhhcCC-CC---CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRL-PP---PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ........+.... .+   ..+..++   ..+.+|+.+||+.||++|||+++|++++....
T Consensus       241 ~-------~~~~~~~~~~~~~~~p~~~~~~~~~~---~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~  299 (307)
T 3omv_A          241 N-------NRDQIIFMVGRGYASPDLSKLYKNCP---KAMKRLVADCVKKVKEERPLFPQILSSIELLQ  299 (307)
T ss_dssp             C-------CHHHHHHHHHTTCCCCCSTTSCTTSC---HHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHH
T ss_pred             C-------hHHHHHHHHhcCCCCCCcccccccch---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence            2       2222322222222 11   1122222   23578999999999999999999999987654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.96  E-value=4.1e-31  Score=181.89  Aligned_cols=129  Identities=22%  Similarity=0.299  Sum_probs=96.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.+......  .....+|+.|+|||++.+..++.++||||+||++|||++ |..||.... 
T Consensus       214 ~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~-  292 (353)
T 4ase_A          214 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-  292 (353)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-
T ss_pred             cceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC-
Confidence            5999999999999999999876543322  234568899999999999999999999999999999997 899986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            ....+...+.....++.+..+..   .+.+++.+||+.||++|||+++|++|+...
T Consensus       293 ------~~~~~~~~i~~g~~~~~p~~~~~---~~~~li~~c~~~dP~~RPt~~eil~~L~~l  345 (353)
T 4ase_A          293 ------IDEEFCRRLKEGTRMRAPDYTTP---EMYQTMLDCWHGEPSQRPTFSELVEHLGNL  345 (353)
T ss_dssp             ------CSHHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcCcChhHCcCHHHHHHHHHHH
Confidence                  22223333333222222222222   246799999999999999999999997543

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.96  E-value=1.5e-30  Score=176.32  Aligned_cols=127  Identities=20%  Similarity=0.290  Sum_probs=96.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||+++++.+||+|||+++......  .......||+.|+|||++.++.++.++|||||||++|||++ |..||.... 
T Consensus       174 ~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~-  252 (308)
T 4gt4_A          174 RNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS-  252 (308)
T ss_dssp             GGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC-
T ss_pred             cceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC-
Confidence            59999999999999999998664332  22334568999999999999999999999999999999998 899986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ... ....+......+.+..++..   +.+++.+||+.||++|||+++|++++..
T Consensus       253 ------~~~-~~~~i~~~~~~~~p~~~~~~---~~~li~~C~~~dP~~RPs~~ei~~~L~a  303 (308)
T 4gt4_A          253 ------NQD-VVEMIRNRQVLPCPDDCPAW---VYALMIECWNEFPSRRPRFKDIHSRLRA  303 (308)
T ss_dssp             ------HHH-HHHHHHTTCCCCCCTTCCHH---HHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred             ------HHH-HHHHHHcCCCCCCcccchHH---HHHHHHHHcCCChhHCcCHHHHHHHHHh
Confidence                  222 22333333333333333333   4689999999999999999999998864

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.96  E-value=4.9e-30  Score=175.21  Aligned_cols=131  Identities=21%  Similarity=0.265  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++||||+||++|||++ |+.||.... 
T Consensus       187 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~-  265 (329)
T 4aoj_A          187 RNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS-  265 (329)
T ss_dssp             GGEEEETTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC-
T ss_pred             hhEEECCCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC-
Confidence            599999999999999999986543322  2234568999999999999999999999999999999998 899986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ........... ...+.+..++.   .+.+|+.+||+.||++|||+++|++++....+.
T Consensus       266 ------~~~~~~~i~~g-~~~~~p~~~~~---~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          266 ------NTEAIDCITQG-RELERPRACPP---EVYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             ------HHHHHHHHHHT-CCCCCCTTCCH---HHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             ------HHHHHHHHHcC-CCCCCcccccH---HHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence                  22222222222 22222222322   247899999999999999999999998766543

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.96  E-value=4e-30  Score=175.46  Aligned_cols=130  Identities=22%  Similarity=0.284  Sum_probs=93.1

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCC-----ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSS-----NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~-----~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.+| .+||+|||+++.+.....     .....+||+.|+|||++.+..++.++||||+||++|+|++|.+||..
T Consensus       179 ~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~  258 (336)
T 4g3f_A          179 DNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQ  258 (336)
T ss_dssp             GGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             HHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCC
Confidence            599999988 699999999987653321     12235799999999999999999999999999999999999999963


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ...       ............+. ..+...   ...+.+|+.+||+.||++|||++|+++|+...-
T Consensus       259 ~~~-------~~~~~~i~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l  315 (336)
T 4g3f_A          259 YFR-------GPLCLKIASEPPPIREIPPSC---APLTAQAIQEGLRKEPVHRASAMELRRKVGKAL  315 (336)
T ss_dssp             TCC-------SCCHHHHHHSCCGGGGSCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCH-------HHHHHHHHcCCCCchhcCccC---CHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHH
Confidence            221       12222222222211 111111   223578999999999999999999998876553

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.96  E-value=4.4e-30  Score=173.52  Aligned_cols=128  Identities=20%  Similarity=0.273  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC------------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS------------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~------------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +|||++.++.+||+|||+++.+.....            .....+||+.|+|||++.+..++.++||||+||++|+|++ 
T Consensus       147 ~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~-  225 (299)
T 4g31_A          147 SNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY-  225 (299)
T ss_dssp             GGEEECTTCCEEECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS-
T ss_pred             HHeEECCCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc-
Confidence            599999999999999999987643221            1123579999999999999889999999999999999995 


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                        ||....       ........+...   ..+...........+|+.+||+.||++|||++++++|+|+..-
T Consensus       226 --Pf~~~~-------~~~~~~~~~~~~---~~p~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  286 (299)
T 4g31_A          226 --PFSTQM-------ERVRTLTDVRNL---KFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL  286 (299)
T ss_dssp             --CCSSHH-------HHHHHHHHHHTT---CCCHHHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred             --CCCCcc-------HHHHHHHHHhcC---CCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence              553111       111111111111   1223333333445789999999999999999999999999764

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-29  Score=176.62  Aligned_cols=142  Identities=20%  Similarity=0.177  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCC----CCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD----SSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~----~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.+|.+||+|||+++.+...    .....+.+||+.|+|||++.+.. ++.++||||+||++|+|++|.+||...
T Consensus       187 ~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~  266 (398)
T 4b99_A          187 SNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK  266 (398)
T ss_dssp             GGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             cccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC
Confidence            5999999999999999999865432    12234578999999999987754 588899999999999999999999632


Q ss_pred             cccCC----------------CCCchhhHHHhhhcCC-CCCCCHHH--HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           76 SSLSS----------------SSDPKIMLIDVLDQRL-PPPVDQKV--IQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        76 ~~~~~----------------~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .....                ................ ..+.+...  ......+.+|+.+||..||++|||++++++|+
T Consensus       267 ~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp  346 (398)
T 4b99_A          267 NYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHP  346 (398)
T ss_dssp             SHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSG
T ss_pred             CHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCH
Confidence            21000                0000000000000000 00111000  01123467899999999999999999999999


Q ss_pred             hhhccC
Q 040414          137 LITRKT  142 (160)
Q Consensus       137 ~~~~~~  142 (160)
                      |+..-.
T Consensus       347 ~f~~~~  352 (398)
T 4b99_A          347 FLAKYH  352 (398)
T ss_dssp             GGTTTC
T ss_pred             hhCcCC
Confidence            998743

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.95  E-value=5.9e-30  Score=172.73  Aligned_cols=128  Identities=21%  Similarity=0.275  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++........  .....||+.|+|||++.+..++.++||||+||++|||++ |+.||...  
T Consensus       157 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~--  234 (299)
T 4asz_A          157 RNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQL--  234 (299)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--
T ss_pred             hhEEECCCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCC--
Confidence            5999999999999999999865443221  223458999999999999999999999999999999998 89998632  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ............. .++.+..++.   .+.+|+.+||+.||++|||+++|+..+...
T Consensus       235 -----~~~~~~~~i~~~~-~~~~p~~~~~---~~~~li~~cl~~dP~~RPs~~~i~~~L~~~  287 (299)
T 4asz_A          235 -----SNNEVIECITQGR-VLQRPRTCPQ---EVYELMLGCWQREPHMRKNIKGIHTLLQNL  287 (299)
T ss_dssp             -----CHHHHHHHHHHTC-CCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHcCC-CCCCCccchH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                 2222333333322 2222222222   247899999999999999999997766544

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.95  E-value=5.4e-29  Score=168.69  Aligned_cols=140  Identities=21%  Similarity=0.272  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccC------CCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTM------VMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~------~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|||++.++.+||+|||+++........    .....||+.|+|||++.+.      .++.++||||+||++|||++|.+
T Consensus       137 ~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~  216 (303)
T 3hmm_A          137 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS  216 (303)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred             ccEEECCCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCC
Confidence            5999999999999999999876543221    2235799999999998754      35668999999999999999988


Q ss_pred             ccccccccCC-------C-CCchhhHHHhhhcCCCCCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSS-------S-SDPKIMLIDVLDQRLPPPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ||........       . ................++.+..  .......+.+++.+||+.||++|||+++|++.+....
T Consensus       217 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~  296 (303)
T 3hmm_A          217 IGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             BTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCccccccccchhcccccchHHHHHHHHhcccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            8743221110       0 0111112222333333333322  1123334678999999999999999999999876544

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.95  E-value=9.5e-29  Score=170.90  Aligned_cols=141  Identities=26%  Similarity=0.217  Sum_probs=90.3

Q ss_pred             CceeecCC-CceEEcccccceeccCCCC----------------------------ccccccccccccCCcccccCC-CC
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSS----------------------------NRTLLAGTYGYIAPELAYTMV-MT   50 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~----------------------------~~~~~~~~~~~~~Pe~~~~~~-~~   50 (160)
                      +|||++.+ +.+||+|||+++.......                            ...+.+||+.|+|||++.+.. ++
T Consensus       146 eNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~  225 (361)
T 4f9c_A          146 SNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQT  225 (361)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCC
T ss_pred             HHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCC
Confidence            59999876 8999999999986543211                            112357999999999987764 78


Q ss_pred             CCcCeeehHHHHHHHHhcCCccccccccC----------------------------CCCCch---hhHHHhhhc---CC
Q 040414           51 EKCDVYSFGVVTLEVLMGKHPRDLLSSLS----------------------------SSSDPK---IMLIDVLDQ---RL   96 (160)
Q Consensus        51 ~~~di~s~G~~~~~l~~g~~~~~~~~~~~----------------------------~~~~~~---~~~~~~~~~---~~   96 (160)
                      .++||||+||++|+|++|..||.......                            ....+.   ......+..   ..
T Consensus       226 ~~~DiWSlG~il~ell~G~~Pf~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  305 (361)
T 4f9c_A          226 TAIDMWSAGVIFLSLLSGRYPFYKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSST  305 (361)
T ss_dssp             THHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC------
T ss_pred             CccchhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccc
Confidence            88999999999999999999985221100                            000000   000000000   00


Q ss_pred             CCC---CC------HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           97 PPP---VD------QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        97 ~~~---~~------~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      +..   ..      .........+.+|+.+||+.||++|+|++|+++|+||.+.
T Consensus       306 p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i  359 (361)
T 4f9c_A          306 PKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHPFFKDM  359 (361)
T ss_dssp             ----------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCC
Confidence            000   00      0000011245789999999999999999999999999763

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.95  E-value=2.1e-28  Score=177.94  Aligned_cols=133  Identities=20%  Similarity=0.196  Sum_probs=99.6

Q ss_pred             CceeecCC--CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN--LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~--~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.+  +.+||+|||+++.+... ......+||+.|+|||++.+..++.++||||+||++|+|++|.+||..    
T Consensus       284 ~Nill~~~~~~~vKl~DFG~a~~~~~~-~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~----  358 (573)
T 3uto_A          284 ENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG----  358 (573)
T ss_dssp             GGEEESSSSCCCEEECCCSSCEECCTT-SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC----
T ss_pred             hhccccCCCCCCEEEeeccceeEccCC-CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCC----
Confidence            59999854  89999999999976543 233456799999999999999999999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         .................+. .........+.+|+.+||+.||.+|||++++++|+|+....
T Consensus       359 ---~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~  418 (573)
T 3uto_A          359 ---ENDDETLRNVKSCDWNMDD-SAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGN  418 (573)
T ss_dssp             ---SSHHHHHHHHHTTCCCCCS-GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCC
T ss_pred             ---cCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCC
Confidence               2223333333333222211 11111223457899999999999999999999999998654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.94  E-value=6.9e-28  Score=163.00  Aligned_cols=136  Identities=21%  Similarity=0.330  Sum_probs=101.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||++..............+++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       145 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~----  220 (297)
T 3fxz_A          145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNEN----  220 (297)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----
T ss_pred             HHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC----
Confidence            5999999999999999999876655444455678999999999998888999999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccc
Q 040414           81 SSDPKIMLIDVLDQR-LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVK  146 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~  146 (160)
                         ............ .....+...   ...+.+++.+||+.||++|||++++++|+|+....+...
T Consensus       221 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~~~~  281 (297)
T 3fxz_A          221 ---PLRALYLIATNGTPELQNPEKL---SAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAKPLSS  281 (297)
T ss_dssp             ---HHHHHHHHHHHCSCCCSCGGGS---CHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCCCGGG
T ss_pred             ---HHHHHHHHHhCCCCCCCCcccc---CHHHHHHHHHHccCChhHCcCHHHHhhChhhcccCcccc
Confidence               122222221111 111111111   223578999999999999999999999999998665443

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.94  E-value=1.1e-27  Score=174.92  Aligned_cols=129  Identities=21%  Similarity=0.257  Sum_probs=96.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.+|++||+|||+++.+....  ..+.+||+.|+|||++.. ..++.++|+||+||++|+|++|.+||...... 
T Consensus       321 eNILld~~G~vKL~DFGlA~~~~~~~--~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~-  397 (689)
T 3v5w_A          321 ANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTK-  397 (689)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSCC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCC-
T ss_pred             HHeEEeCCCCEEecccceeeecCCCC--CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-
Confidence            59999999999999999998765432  345689999999999964 46889999999999999999999999633211 


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                         ................+  ...   ...+.+|+.+||+.||.+|++     +++|++|+||..
T Consensus       398 ---~~~~i~~~i~~~~~~~p--~~~---S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~  455 (689)
T 3v5w_A          398 ---DKHEIDRMTLTMAVELP--DSF---SPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRS  455 (689)
T ss_dssp             ---CHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTT
T ss_pred             ---HHHHHHHhhcCCCCCCC--ccC---CHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccC
Confidence               11122222222222221  111   123578999999999999998     799999999986

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.93  E-value=1e-26  Score=157.26  Aligned_cols=130  Identities=20%  Similarity=0.238  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC---CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV---MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~---~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||.+.+..   .+.++|+||+|+++|+|++|..||.... 
T Consensus       166 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~-  244 (298)
T 2zv2_A          166 SNLLVGEDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER-  244 (298)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred             HHEEECCCCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc-
Confidence            599999999999999999987654443334456899999999987654   3567899999999999999999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ...............+.....   ...+.+++.+||+.||++|||++++++|+|+.+
T Consensus       245 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~~  298 (298)
T 2zv2_A          245 ------IMCLHSKIKSQALEFPDQPDI---AEDLKDLITRMLDKNPESRIVVPEIKLHPWVTR  298 (298)
T ss_dssp             ------HHHHHHHHHHCCCCCCSSSCC---CHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHHC
T ss_pred             ------HHHHHHHHhcccCCCCCcccc---CHHHHHHHHHHhhcChhhCCCHHHHhcCccccC
Confidence                  112222222222222211111   123578999999999999999999999999864

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.93  E-value=4.2e-26  Score=156.67  Aligned_cols=128  Identities=22%  Similarity=0.300  Sum_probs=97.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|..||...     
T Consensus       134 ~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----  208 (337)
T 1o6l_A          134 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----  208 (337)
T ss_dssp             GGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS-----
T ss_pred             HHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC-----
Confidence            599999999999999999986444333445567999999999999888899999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                        ................+.  ..   ...+.+++.+||+.||++||     +++++++|+|+..
T Consensus       209 --~~~~~~~~i~~~~~~~p~--~~---s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~  266 (337)
T 1o6l_A          209 --DHERLFELILMEEIRFPR--TL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             --SHHHHHHHHHHCCCCCCT--TS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             --CHHHHHHHHHcCCCCCCC--CC---CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCC
Confidence              222222333333222221  11   12347899999999999999     9999999999975

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.93  E-value=1.7e-26  Score=157.77  Aligned_cols=133  Identities=22%  Similarity=0.328  Sum_probs=99.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       170 ~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~----  245 (321)
T 2c30_A          170 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDS----  245 (321)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----
T ss_pred             HHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC----
Confidence            5999999999999999999876554434445678999999999988888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ........... ..+.... .......+.+++.+||+.||++|||++++++|+|+....
T Consensus       246 ---~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          246 ---PVQAMKRLRDS-PPPKLKN-SHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             ---HHHHHHHHHHS-SCCCCTT-GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGCC
T ss_pred             ---HHHHHHHHhcC-CCCCcCc-cccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccCC
Confidence               12222222222 2111110 111122357899999999999999999999999998754

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.93  E-value=2.4e-26  Score=156.40  Aligned_cols=139  Identities=19%  Similarity=0.187  Sum_probs=95.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+ ..++.++|+||+|+++|+|++|..||...... 
T Consensus       148 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-  226 (311)
T 3niz_A          148 QNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDD-  226 (311)
T ss_dssp             GGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTT-
T ss_pred             HhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChH-
Confidence            5999999999999999999876544444444568999999999876 45788999999999999999999998632211 


Q ss_pred             CCCCchhhHHHhhhcCCCCC--------------------CCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           80 SSSDPKIMLIDVLDQRLPPP--------------------VDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                         ..............+..                    ....  .......+.+|+.+||+.||++|||++++++|+|
T Consensus       227 ---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~  303 (311)
T 3niz_A          227 ---DQLPKIFSILGTPNPREWPQVQELPLWKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPY  303 (311)
T ss_dssp             ---THHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred             ---HHHHHHHHHHCCCChHHhhhhhccchhhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence               00111111111110000                    0000  0001124578999999999999999999999999


Q ss_pred             hhccCc
Q 040414          138 ITRKTP  143 (160)
Q Consensus       138 ~~~~~~  143 (160)
                      +....+
T Consensus       304 f~~~~~  309 (311)
T 3niz_A          304 FKDLDP  309 (311)
T ss_dssp             GTTSCT
T ss_pred             cccCCc
Confidence            987554

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.93  E-value=1.5e-26  Score=161.74  Aligned_cols=135  Identities=20%  Similarity=0.351  Sum_probs=98.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||........
T Consensus       182 ~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~  261 (396)
T 4dc2_A          182 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN  261 (396)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC---
T ss_pred             HHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccc
Confidence            59999999999999999998644344445567799999999999998899999999999999999999999963322111


Q ss_pred             C--CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH------HHHHHHHhhhc
Q 040414           81 S--SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM------QYVSQEFLITR  140 (160)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~------~~~~~~~~~~~  140 (160)
                      .  .................+.  ..   ...+.+|+.+||+.||.+||++      +++++|+||..
T Consensus       262 ~~~~~~~~~~~~i~~~~~~~p~--~~---s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~  324 (396)
T 4dc2_A          262 PDQNTEDYLFQVILEKQIRIPR--SL---SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  324 (396)
T ss_dssp             ---CCHHHHHHHHHHCCCCCCT--TS---CHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTT
T ss_pred             cchhhHHHHHHHHhccccCCCC--cC---CHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccC
Confidence            1  1111122222333322221  11   1234789999999999999984      89999999975

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.93  E-value=5.5e-27  Score=161.95  Aligned_cols=128  Identities=22%  Similarity=0.316  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||..      
T Consensus       153 ~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~------  226 (353)
T 3txo_A          153 DNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEA------  226 (353)
T ss_dssp             GGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             HHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCC------
Confidence            59999999999999999998644443444556799999999999888889999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH------HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM------QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~------~~~~~~~~~~~  140 (160)
                       .................+..     ....+.+++.+||+.||++||++      +++++|+||..
T Consensus       227 -~~~~~~~~~i~~~~~~~p~~-----~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~  286 (353)
T 3txo_A          227 -ENEDDLFEAILNDEVVYPTW-----LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKE  286 (353)
T ss_dssp             -SSHHHHHHHHHHCCCCCCTT-----SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTT
T ss_pred             -CCHHHHHHHHHcCCCCCCCC-----CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccC
Confidence             22233334444443332211     11234789999999999999998      99999999986

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.93  E-value=7.4e-27  Score=159.76  Aligned_cols=145  Identities=21%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++   .+||+|||+++.............+++.|+|||.+.+..++.++|+||+|+++|+|++|..||.....
T Consensus       135 ~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  214 (325)
T 3kn6_A          135 ENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDR  214 (325)
T ss_dssp             GGEEEEC----CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC----
T ss_pred             HHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCcc
Confidence            599997665   89999999998765444444456678999999999888889999999999999999999999974332


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVK  146 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~  146 (160)
                      .....................+ ..........+.+|+.+||+.||.+|||++++++|+|+........
T Consensus       215 ~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~~~~  282 (325)
T 3kn6_A          215 SLTCTSAVEIMKKIKKGDFSFE-GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSS  282 (325)
T ss_dssp             ---CCCHHHHHHHHTTTCCCCC-SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCCCCC
T ss_pred             ccccccHHHHHHHHHcCCCCCC-cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCccCCC
Confidence            2111222222233322222221 1222223345688999999999999999999999999998655443

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.93  E-value=4.7e-26  Score=162.33  Aligned_cols=139  Identities=21%  Similarity=0.173  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++..... .......+|+.|+|||++.+..++.++||||+||++++|++|.+||........
T Consensus       193 ~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~  271 (464)
T 3ttj_A          193 SNIVVKSDCTLKILDFGLARTAGTS-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ  271 (464)
T ss_dssp             GGEEECTTSCEEECCCCCC-----C-CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HhEEEeCCCCEEEEEEEeeeecCCC-cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            5999999999999999999865433 223346789999999999988899999999999999999999999963221100


Q ss_pred             --------C-------CCchhhHHHhhhcCC---------------CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 --------S-------SDPKIMLIDVLDQRL---------------PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 --------~-------~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                              +       ...............               .+............+.+|+.+||+.||++|||++
T Consensus       272 ~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~  351 (464)
T 3ttj_A          272 WNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD  351 (464)
T ss_dssp             HHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             HHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHH
Confidence                    0       000000000111100               0001111112234578999999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       352 e~L~Hp~~~~  361 (464)
T 3ttj_A          352 DALQHPYINV  361 (464)
T ss_dssp             HHHTSTTTGG
T ss_pred             HHhcChhhhh
Confidence            9999999985

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.93  E-value=2.1e-26  Score=163.20  Aligned_cols=133  Identities=22%  Similarity=0.239  Sum_probs=98.8

Q ss_pred             Cceeec---CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILN---SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~---~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++   .++.+||+|||+++.............||+.|+|||++.+..++.++||||+|+++|+|++|.+||..   
T Consensus       139 ~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~---  215 (444)
T 3soa_A          139 ENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWD---  215 (444)
T ss_dssp             TTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCC---
T ss_pred             HHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCC---
Confidence            599998   45789999999998765544444456799999999999988889999999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          .................+.+ ........+.+|+.+||+.||++|||++++++|+|+...
T Consensus       216 ----~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          216 ----EDQHRLYQQIKAGAYDFPSP-EWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             ----SSHHHHHHHHHHTCCCCCTT-TTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             ----ccHHHHHHHHHhCCCCCCcc-ccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccCC
Confidence                22223333333332222111 001112235789999999999999999999999999764

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.93  E-value=2.8e-26  Score=157.05  Aligned_cols=129  Identities=23%  Similarity=0.309  Sum_probs=97.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCC-CCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMT-EKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~-~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++..... .......|++.|+|||++.+..+. .++|+||+|+++|+|++|..||..     
T Consensus       143 ~NIll~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~-----  216 (328)
T 3fe3_A          143 ENLLLDADMNIKIADFGFSNEFTVG-GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDG-----  216 (328)
T ss_dssp             GGEEECTTSCEEECSTTCCGGGSSS-CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCC-----
T ss_pred             HHEEEcCCCCEEEeeccCceecCCC-CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCC-----
Confidence            5999999999999999999765433 233446789999999999887764 689999999999999999999962     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        .................+..     ....+.+++.+||..||.+|||++++++|+|+....
T Consensus       217 --~~~~~~~~~i~~~~~~~p~~-----~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          217 --QNLKELRERVLRGKYRIPFY-----MSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGH  272 (328)
T ss_dssp             --SSHHHHHHHHHHCCCCCCTT-----SCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTC
T ss_pred             --CCHHHHHHHHHhCCCCCCCC-----CCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCC
Confidence              22233333333333333221     112347899999999999999999999999998643

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.93  E-value=5.5e-27  Score=162.97  Aligned_cols=135  Identities=11%  Similarity=-0.006  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++......   ....+++.|+|||.+.+  ..++.++|+||+|+++|+|++|..||......
T Consensus       223 ~NIll~~~~~~kL~DFG~a~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~  299 (371)
T 3q60_A          223 DNLFIMPDGRLMLGDVSALWKVGTRG---PASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPG  299 (371)
T ss_dssp             GGEEECTTSCEEECCGGGEEETTCEE---EGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTT
T ss_pred             HHEEECCCCCEEEEecceeeecCCCc---cCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcc
Confidence            59999999999999999998654321   13446689999999987  56888999999999999999999999744221


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ....................+....   ....+.+|+.+||+.||++|||++++++|+|+...
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  359 (371)
T 3q60_A          300 IKGSWKRPSLRVPGTDSLAFGSCTP---LPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQL  359 (371)
T ss_dssp             CTTCCCBCCTTSCCCCSCCCTTSSC---CCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHH
T ss_pred             cccchhhhhhhhccccccchhhccC---CCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHH
Confidence            1111000000000011111111111   12235789999999999999999999999999874

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.93  E-value=8.8e-27  Score=158.19  Aligned_cols=134  Identities=24%  Similarity=0.222  Sum_probs=93.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++..... .......+|+.|+|||++.+..++.++|+||+|+++|+|++|.+||....    
T Consensus       149 ~Nil~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~----  223 (308)
T 3g33_A          149 ENILVTSGGTVKLADFGLARIYSYQ-MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS----  223 (308)
T ss_dssp             TTEEECTTSCEEECSCSCTTTSTTC-CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS----
T ss_pred             HHEEEcCCCCEEEeeCccccccCCC-cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC----
Confidence            5999999999999999999765432 22334568999999999988889999999999999999999999986322    


Q ss_pred             CCCchhhHHHhhh---cCC-------------------CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLD---QRL-------------------PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~---~~~-------------------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                         ..........   ...                   +.+...........+.+|+.+||+.||++|||++++++|+|+
T Consensus       224 ---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~  300 (308)
T 3g33_A          224 ---EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYL  300 (308)
T ss_dssp             ---HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC
T ss_pred             ---HHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccc
Confidence               1111111110   000                   000000000112345789999999999999999999999999


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ....
T Consensus       301 ~~~~  304 (308)
T 3g33_A          301 HKDE  304 (308)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8754

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.92  E-value=4.4e-26  Score=157.43  Aligned_cols=128  Identities=23%  Similarity=0.337  Sum_probs=98.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||..      
T Consensus       150 ~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~------  223 (353)
T 2i0e_A          150 DNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG------  223 (353)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             HHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCC------
Confidence            59999999999999999998644333344556799999999999988889999999999999999999999862      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                       .................+.  .   ....+.+++.+||+.||++||     +++++++|+|+..
T Consensus       224 -~~~~~~~~~i~~~~~~~p~--~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~  282 (353)
T 2i0e_A          224 -EDEDELFQSIMEHNVAYPK--S---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRY  282 (353)
T ss_dssp             -SSHHHHHHHHHHCCCCCCT--T---SCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTT
T ss_pred             -CCHHHHHHHHHhCCCCCCC--C---CCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccC
Confidence             2223333333333332221  1   112357899999999999999     4799999999975

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.92  E-value=4.8e-26  Score=161.67  Aligned_cols=129  Identities=22%  Similarity=0.286  Sum_probs=96.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|..||...     
T Consensus       278 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----  352 (446)
T 4ejn_A          278 ENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ-----  352 (446)
T ss_dssp             GGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----
T ss_pred             HHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC-----
Confidence            599999999999999999986444433444567899999999999888999999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                        ................+.  ..   ...+.+|+.+||+.||++||     +++++++|+|+...
T Consensus       353 --~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~  411 (446)
T 4ejn_A          353 --DHEKLFELILMEEIRFPR--TL---GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI  411 (446)
T ss_dssp             --SHHHHHHHHHHCCCCCCT--TS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             --CHHHHHHHHHhCCCCCCc--cC---CHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCC
Confidence              222222333333222211  11   12357899999999999999     99999999999863

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.92  E-value=1.7e-26  Score=157.84  Aligned_cols=135  Identities=16%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+ ..++.++|+||+|+++|+|++|.+||.....  
T Consensus       129 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--  206 (324)
T 3mtl_A          129 QNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTV--  206 (324)
T ss_dssp             GGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--
Confidence            5999999999999999999865544333344567899999999876 4578899999999999999999999863221  


Q ss_pred             CCCCchhhHHHh---hhcCC------------------CCCCC----HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           80 SSSDPKIMLIDV---LDQRL------------------PPPVD----QKVIQDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        80 ~~~~~~~~~~~~---~~~~~------------------~~~~~----~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                           .......   .....                  +....    .........+.+|+.+||+.||++|||++++++
T Consensus       207 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  281 (324)
T 3mtl_A          207 -----EEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK  281 (324)
T ss_dssp             -----HHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             -----HHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence                 1111111   00000                  00000    000011234578999999999999999999999


Q ss_pred             HHhhhccC
Q 040414          135 EFLITRKT  142 (160)
Q Consensus       135 ~~~~~~~~  142 (160)
                      |+|+....
T Consensus       282 hp~f~~~~  289 (324)
T 3mtl_A          282 HPFFLSLG  289 (324)
T ss_dssp             SGGGGGGC
T ss_pred             Chhhhhcc
Confidence            99998743

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.92  E-value=1.2e-25  Score=157.59  Aligned_cols=135  Identities=24%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.   ++.+||+|||+++...... ......+|+.|+|||++.+..++.++||||+||++|+|++|..||.....
T Consensus       190 ~Nill~~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  268 (400)
T 1nxk_A          190 ENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  268 (400)
T ss_dssp             GGEEESSSSTTCCEEECCCTTCEECC------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT
T ss_pred             ceEEEecCCCCccEEEEecccccccCCCC-ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc
Confidence            5999997   7889999999998654322 23345689999999999888899999999999999999999999964332


Q ss_pred             cCCCCCchhhHHHhhhcCC--CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRL--PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .....   ...........  +.+....   ....+.+|+.+||+.||++|||++++++|+|+....
T Consensus       269 ~~~~~---~~~~~i~~~~~~~~~~~~~~---~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~  329 (400)
T 1nxk_A          269 LAISP---GMKTRIRMGQYEFPNPEWSE---VSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  329 (400)
T ss_dssp             CSSCC---SHHHHHHHTCCCCCTTTTTT---SCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTTT
T ss_pred             ccccH---HHHHHHHcCcccCCCccccc---CCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCCC
Confidence            21111   11111111222  2111111   122357899999999999999999999999998744

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=3.2e-26  Score=156.39  Aligned_cols=134  Identities=22%  Similarity=0.266  Sum_probs=99.7

Q ss_pred             CceeecC--CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS--NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~--~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.  ++.+||+|||+++...... ......+++.|+|||++.+..++.++|+||+|+++|+|++|.+||..    
T Consensus       131 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~----  205 (321)
T 1tki_A          131 ENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA----  205 (321)
T ss_dssp             GGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCC----
T ss_pred             HHEEEccCCCCCEEEEECCCCeECCCCC-ccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcC----
Confidence            5999987  7899999999998764332 23345689999999999888788899999999999999999999862    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                         .................+ ..........+.+++.+||+.||.+|||++++++|+|+.....
T Consensus       206 ---~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~~  266 (321)
T 1tki_A          206 ---ETNQQIIENIMNAEYTFD-EEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIE  266 (321)
T ss_dssp             ---SSHHHHHHHHHHTCCCCC-HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCGG
T ss_pred             ---CCHHHHHHHHHcCCCCCC-hhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccCcc
Confidence               222233333333333221 1111122334678999999999999999999999999987544

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.92  E-value=6.9e-26  Score=156.43  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=98.1

Q ss_pred             CceeecCCCc---eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLE---AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~---~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.   +||+|||+++.............+|+.|+|||++.+..++.++|+||+|+++|+|++|..||...  
T Consensus       159 ~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--  236 (351)
T 3c0i_A          159 HCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGT--  236 (351)
T ss_dssp             GGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSS--
T ss_pred             HHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCc--
Confidence            5999986654   99999999987665444344567899999999999888899999999999999999999998621  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ...............+ ..........+.+++.+||+.||++|||++++++|+|+...
T Consensus       237 ------~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          237 ------KERLFEGIIKGKYKMN-PRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             ------HHHHHHHHHHTCCCCC-HHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             ------HHHHHHHHHcCCCCCC-ccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence                  1122222222222211 11111123346789999999999999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.92  E-value=6.1e-26  Score=160.41  Aligned_cols=136  Identities=21%  Similarity=0.194  Sum_probs=92.3

Q ss_pred             CceeecCCCc--eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLE--AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.  +||+|||++......   .....+|+.|+|||++.+..++.++||||+||++|+|++|.+||..... 
T Consensus       229 ~NILl~~~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~-  304 (429)
T 3kvw_A          229 ENILLKQQGRSGIKVIDFGSSCYEHQR---VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDE-  304 (429)
T ss_dssp             GGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             HHeEEccCCCcceEEeecccceecCCc---ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCH-
Confidence            5999999887  999999999764432   2345689999999999988899999999999999999999999863221 


Q ss_pred             CCCCCchhhHHHhhhc--C--------------------C---------------------------CCCCCHHHHHH--
Q 040414           79 SSSSDPKIMLIDVLDQ--R--------------------L---------------------------PPPVDQKVIQD--  107 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~--~--------------------~---------------------------~~~~~~~~~~~--  107 (160)
                            ...+......  .                    .                           .++........  
T Consensus       305 ------~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  378 (429)
T 3kvw_A          305 ------GDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALK  378 (429)
T ss_dssp             ------HHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTT
T ss_pred             ------HHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhcc
Confidence                  1111000000  0                    0                           00000000000  


Q ss_pred             ---HHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcccc
Q 040414          108 ---ILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVK  146 (160)
Q Consensus       108 ---~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~  146 (160)
                         ...+.+|+.+||+.||++|||++++++|+|+....+...
T Consensus       379 ~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~~~~~  420 (429)
T 3kvw_A          379 GCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLPKPP  420 (429)
T ss_dssp             TCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC-------
T ss_pred             ccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccCCCCCC
Confidence               233578999999999999999999999999998654443

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.92  E-value=2e-26  Score=158.68  Aligned_cols=129  Identities=23%  Similarity=0.321  Sum_probs=98.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||...     
T Consensus       147 ~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~-----  221 (345)
T 1xjd_A          147 DNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ-----  221 (345)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS-----
T ss_pred             hhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC-----
Confidence            599999999999999999986443333445567899999999999888899999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH-HHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ-YVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~-~~~~~~~~~~~  141 (160)
                        ................+  ...   ...+.+++.+||+.||++||+++ ++++|+|+...
T Consensus       222 --~~~~~~~~i~~~~~~~p--~~~---s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~  276 (345)
T 1xjd_A          222 --DEEELFHSIRMDNPFYP--RWL---EKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  276 (345)
T ss_dssp             --SHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             --CHHHHHHHHHhCCCCCC--ccc---CHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCC
Confidence              22222333332222221  111   12357899999999999999998 99999999763

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.92  E-value=1.9e-26  Score=161.08  Aligned_cols=134  Identities=24%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCC---------------------CCccccccccccccCCccccc-CCCCCCcCeeeh
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD---------------------SSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSF   58 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~---------------------~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~   58 (160)
                      +|||++.++.+||+|||+++.....                     ........+|+.|+|||++.+ ..++.++||||+
T Consensus       138 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSl  217 (388)
T 3oz6_A          138 SNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSL  217 (388)
T ss_dssp             GGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHH
T ss_pred             HHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHH
Confidence            5999999999999999999865321                     111223578999999999876 567889999999


Q ss_pred             HHHHHHHHhcCCccccccccCCCCCchhhHHHhhhc-------------------------------CCCCCCCHHHH--
Q 040414           59 GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-------------------------------RLPPPVDQKVI--  105 (160)
Q Consensus        59 G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~--  105 (160)
                      ||++++|++|.+||.....       .......+..                               ...........  
T Consensus       218 G~il~ell~g~~pf~~~~~-------~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (388)
T 3oz6_A          218 GCILGEILCGKPIFPGSST-------MNQLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKN  290 (388)
T ss_dssp             HHHHHHHHHSSCSCCCSSH-------HHHHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCH-------HHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhh
Confidence            9999999999999963221       1111111000                               00000000000  


Q ss_pred             ---------HHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414          106 ---------QDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus       106 ---------~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                               .....+.+|+.+||+.||++|||++++++|+|+..-
T Consensus       291 ~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~  335 (388)
T 3oz6_A          291 LLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIF  335 (388)
T ss_dssp             HHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTT
T ss_pred             hcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHh
Confidence                     012246789999999999999999999999998763

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.92  E-value=5.8e-26  Score=156.46  Aligned_cols=135  Identities=20%  Similarity=0.359  Sum_probs=97.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||........
T Consensus       139 ~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  218 (345)
T 3a8x_A          139 DNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDN  218 (345)
T ss_dssp             GGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC---
T ss_pred             HHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccc
Confidence            59999999999999999998644333344456789999999999988889999999999999999999999963221111


Q ss_pred             C--CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH------HHHHHHHhhhc
Q 040414           81 S--SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM------QYVSQEFLITR  140 (160)
Q Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~------~~~~~~~~~~~  140 (160)
                      .  .................+  ...   ...+.+++.+||+.||.+||++      +++++|+|+..
T Consensus       219 ~~~~~~~~~~~~i~~~~~~~p--~~~---s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~  281 (345)
T 3a8x_A          219 PDQNTEDYLFQVILEKQIRIP--RSL---SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRN  281 (345)
T ss_dssp             ----CHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTT
T ss_pred             cccccHHHHHHHHHcCCCCCC--CCC---CHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCC
Confidence            0  111112222222222222  111   1235789999999999999995      89999999975

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.92  E-value=2.2e-26  Score=154.92  Aligned_cols=134  Identities=19%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+. .++.++|+||+|+++|+|++|.+||.....  
T Consensus       129 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--  206 (288)
T 1ob3_A          129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSE--  206 (288)
T ss_dssp             GGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--
Confidence            59999999999999999998654333333345678999999998764 478899999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhh---c-----------------CCC--CCCC--HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           80 SSSDPKIMLIDVLD---Q-----------------RLP--PPVD--QKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        80 ~~~~~~~~~~~~~~---~-----------------~~~--~~~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                           .........   .                 ...  .+..  .........+.+++.+||+.||++|||++++++|
T Consensus       207 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~h  281 (288)
T 1ob3_A          207 -----ADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEH  281 (288)
T ss_dssp             -----HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -----HHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcC
Confidence                 111111100   0                 000  0000  0000012235789999999999999999999999


Q ss_pred             Hhhhcc
Q 040414          136 FLITRK  141 (160)
Q Consensus       136 ~~~~~~  141 (160)
                      +|+...
T Consensus       282 p~f~~~  287 (288)
T 1ob3_A          282 AYFKEN  287 (288)
T ss_dssp             GGGGC-
T ss_pred             cchhhc
Confidence            999764

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.92  E-value=9e-26  Score=156.32  Aligned_cols=132  Identities=23%  Similarity=0.224  Sum_probs=97.5

Q ss_pred             CceeecCCC----ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNL----EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++    .+||+|||+++...... ......||+.|+|||++.+..++.++|+||+|+++|+|++|.+||..  
T Consensus       144 ~NIll~~~~~~~~~vkl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~--  220 (361)
T 2yab_A          144 ENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--  220 (361)
T ss_dssp             GGEEESCTTSSSCCEEECCCSSCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCC--
T ss_pred             HHEEEeCCCCCccCEEEEecCCceEcCCCC-ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCC--
Confidence            589998776    79999999998765432 23345689999999999988889999999999999999999999862  


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           .................+ ..........+.+|+.+||..||.+|||++++++|+|+...
T Consensus       221 -----~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  279 (361)
T 2yab_A          221 -----DTKQETLANITAVSYDFD-EEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPV  279 (361)
T ss_dssp             -----SSHHHHHHHHHTTCCCCC-HHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCS
T ss_pred             -----CCHHHHHHHHHhcCCCCC-chhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCC
Confidence                 222222333322222211 01111123346889999999999999999999999999853

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.92  E-value=1.1e-25  Score=166.60  Aligned_cols=128  Identities=23%  Similarity=0.339  Sum_probs=100.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||..      
T Consensus       471 ~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~------  544 (674)
T 3pfq_A          471 DNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEG------  544 (674)
T ss_dssp             TTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             hhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCC------
Confidence            69999999999999999998654444445567799999999999988899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH-----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM-----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~-----~~~~~~~~~~~  140 (160)
                       .................+.  .   ....+.+|+.+||+.||++|+++     ++|++|+||..
T Consensus       545 -~~~~~~~~~i~~~~~~~p~--~---~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~  603 (674)
T 3pfq_A          545 -EDEDELFQSIMEHNVAYPK--S---MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRY  603 (674)
T ss_dssp             -SSHHHHHHHHHSSCCCCCT--T---SCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSS
T ss_pred             -CCHHHHHHHHHhCCCCCCc--c---CCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccC
Confidence             2233334444443333221  1   12235789999999999999997     99999999985

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.92  E-value=7.1e-26  Score=155.46  Aligned_cols=128  Identities=23%  Similarity=0.332  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||++....... ......|++.|+|||++.+..+ +.++|+||+|+++|+|++|..||.......
T Consensus       137 ~NIll~~~~~~kl~DFG~s~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~  215 (336)
T 3h4j_B          137 ENLLLDDNLNVKIADFGLSNIMTDGN-FLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPN  215 (336)
T ss_dssp             TTEEECTTCCEEECCSSCTBTTTTSB-TTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTT
T ss_pred             hhEEEcCCCCEEEEEeccceeccCCc-ccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHH
Confidence            69999999999999999998654332 2334568999999999987765 678999999999999999999997432111


Q ss_pred             CCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           80 SSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      .       .......  ..+...+       ..+.+++.+||+.||.+|||++++++|+|+....+
T Consensus       216 ~-------~~~i~~~~~~~p~~~s-------~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~~~  267 (336)
T 3h4j_B          216 L-------FKKVNSCVYVMPDFLS-------PGAQSLIRRMIVADPMQRITIQEIRRDPWFNVNLP  267 (336)
T ss_dssp             C-------BCCCCSSCCCCCTTSC-------HHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTTCC
T ss_pred             H-------HHHHHcCCCCCcccCC-------HHHHHHHHHHcCCChhHCcCHHHHHhChhhccCCc
Confidence            0       0000111  1111111       22478999999999999999999999999987543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.92  E-value=1.6e-25  Score=154.92  Aligned_cols=134  Identities=20%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++. ++.+||+|||+++...... ......+++.|+|||++.+.. ++.++|+||+|+++|+|++|..||..... 
T Consensus       160 ~NIll~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-  237 (360)
T 3e3p_A          160 HNVLVNEADGTLKLCDFGSAKKLSPSE-PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNS-  237 (360)
T ss_dssp             GGEEEETTTTEEEECCCTTCBCCCTTS-CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             HHEEEeCCCCcEEEeeCCCceecCCCC-CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCCh-
Confidence            5999996 8999999999998655432 223456789999999986654 78899999999999999999999863221 


Q ss_pred             CCCCCchhhHHHhhhc--------------CC-------CCCCCHHH------HHHHHHHHHHHHhhhccCCCCCCCHHH
Q 040414           79 SSSSDPKIMLIDVLDQ--------------RL-------PPPVDQKV------IQDILLASTISFACLQSNPKSRPTMQY  131 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~--------------~~-------~~~~~~~~------~~~~~~~~~l~~~cl~~dp~~Rps~~~  131 (160)
                            ..........              ..       ........      ......+.+|+.+||+.||++|||+++
T Consensus       238 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e  311 (360)
T 3e3p_A          238 ------AGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYE  311 (360)
T ss_dssp             ------HHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             ------HHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHH
Confidence                  1111111100              00       00000000      001234688999999999999999999


Q ss_pred             HHHHHhhhccC
Q 040414          132 VSQEFLITRKT  142 (160)
Q Consensus       132 ~~~~~~~~~~~  142 (160)
                      +++|+|+....
T Consensus       312 ~l~hp~f~~~~  322 (360)
T 3e3p_A          312 ALCHPYFDELH  322 (360)
T ss_dssp             HTTSGGGGGGG
T ss_pred             HhcCccccccC
Confidence            99999999743

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.92  E-value=1e-25  Score=155.90  Aligned_cols=129  Identities=22%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC--------
Q 040414            8 NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS--------   79 (160)
Q Consensus         8 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~--------   79 (160)
                      ++.+||+|||+++.....   .....+++.|+|||++.+..++.++||||+|+++|+|++|..||.......        
T Consensus       198 ~~~~kl~DFG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~  274 (360)
T 3llt_A          198 STGIKLIDFGCATFKSDY---HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESI  274 (360)
T ss_dssp             CCCEEECCCTTCEETTSC---CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             CCCEEEEeccCceecCCC---CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHh
Confidence            788999999999864432   234568999999999998889999999999999999999999986322100        


Q ss_pred             CCCCchhhHHHhh-------------hcCCCCCCC-HHHH------------HHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           80 SSSDPKIMLIDVL-------------DQRLPPPVD-QKVI------------QDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        80 ~~~~~~~~~~~~~-------------~~~~~~~~~-~~~~------------~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                      ....+........             ....+.... ....            .....+.+|+.+||+.||++|||+++++
T Consensus       275 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL  354 (360)
T 3llt_A          275 IQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELL  354 (360)
T ss_dssp             TCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHT
T ss_pred             cCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHh
Confidence            0000000000000             000000000 0000            0013456899999999999999999999


Q ss_pred             HHHhhh
Q 040414          134 QEFLIT  139 (160)
Q Consensus       134 ~~~~~~  139 (160)
                      +|+|++
T Consensus       355 ~hp~f~  360 (360)
T 3llt_A          355 KHKFLE  360 (360)
T ss_dssp             TSGGGC
T ss_pred             cCcccC
Confidence            999984

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.92  E-value=4.1e-26  Score=155.55  Aligned_cols=134  Identities=20%  Similarity=0.201  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+. .++.++|+||+|+++|+|++|.+||.....  
T Consensus       137 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--  214 (317)
T 2pmi_A          137 QNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTND--  214 (317)
T ss_dssp             GGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--
Confidence            59999999999999999998765443333445689999999998764 578899999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhh--c----------------------CCCCCCCHHHH------HHHHHHHHHHHhhhccCCCCCCCH
Q 040414           80 SSSDPKIMLIDVLD--Q----------------------RLPPPVDQKVI------QDILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        80 ~~~~~~~~~~~~~~--~----------------------~~~~~~~~~~~------~~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                           .........  .                      ..+... ....      .....+.+|+.+||+.||++|||+
T Consensus       215 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~  288 (317)
T 2pmi_A          215 -----EEQLKLIFDIMGTPNESLWPSVTKLPKYNPNIQQRPPRDL-RQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSA  288 (317)
T ss_dssp             -----HHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTCCCCCCCCS-HHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             -----HHHHHHHHHHhCCCChhHhhhhhhhhhcccccccccchhH-HHhhcccccccCCHHHHHHHHHHCCCCcccCCCH
Confidence                 111100000  0                      000000 0000      011245789999999999999999


Q ss_pred             HHHHHHHhhhccC
Q 040414          130 QYVSQEFLITRKT  142 (160)
Q Consensus       130 ~~~~~~~~~~~~~  142 (160)
                      +++++|+|+..-.
T Consensus       289 ~e~l~hp~f~~~~  301 (317)
T 2pmi_A          289 KQALHHPWFAEYY  301 (317)
T ss_dssp             HHHTTSGGGGGGC
T ss_pred             HHHhCChhhhccc
Confidence            9999999998743

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.92  E-value=3.8e-26  Score=154.03  Aligned_cols=135  Identities=19%  Similarity=0.154  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||++.+.. ++.++|+||+|+++++|++|..||....   
T Consensus       130 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~---  206 (292)
T 3o0g_A          130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGN---  206 (292)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS---
T ss_pred             HHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCC---
Confidence            599999999999999999987654444444567899999999987765 6889999999999999998877753111   


Q ss_pred             CCCCchhhHHHhhh--cCCCC----------------------CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           80 SSSDPKIMLIDVLD--QRLPP----------------------PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        80 ~~~~~~~~~~~~~~--~~~~~----------------------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                         ...........  .....                      ............+.+|+.+||+.||++|||++++++|
T Consensus       207 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h  283 (292)
T 3o0g_A          207 ---DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             ---SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTS
T ss_pred             ---CHHHHHHHHHHHhCCCChhhhhhhcccccccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcC
Confidence               11111111100  00000                      0000000112235789999999999999999999999


Q ss_pred             Hhhhcc
Q 040414          136 FLITRK  141 (160)
Q Consensus       136 ~~~~~~  141 (160)
                      +|+...
T Consensus       284 p~f~~~  289 (292)
T 3o0g_A          284 PYFSDF  289 (292)
T ss_dssp             GGGTTC
T ss_pred             cccccC
Confidence            999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.92  E-value=1.2e-25  Score=156.76  Aligned_cols=138  Identities=20%  Similarity=0.274  Sum_probs=92.9

Q ss_pred             Cceeec--CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN--SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~--~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++  .++.+||+|||+++.....   .....+++.|+|||++.+..++.++|+||+||++|+|++|.+||......
T Consensus       188 ~NIll~~~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~  264 (382)
T 2vx3_A          188 ENILLCNPKRSAIKIVDFGSSCQLGQR---IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEV  264 (382)
T ss_dssp             GGEEESSTTSCCEEECCCTTCEETTCC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH
T ss_pred             ccEEEecCCCCcEEEEeccCceecccc---cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH
Confidence            599994  5788999999999876432   22356889999999999888899999999999999999999998632210


Q ss_pred             CC-------CCCchhhH-------HHhhhc----------------CCCCCCC----------------------HHHHH
Q 040414           79 SS-------SSDPKIML-------IDVLDQ----------------RLPPPVD----------------------QKVIQ  106 (160)
Q Consensus        79 ~~-------~~~~~~~~-------~~~~~~----------------~~~~~~~----------------------~~~~~  106 (160)
                      ..       ...+....       ...+..                ...++..                      .....
T Consensus       265 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  344 (382)
T 2vx3_A          265 DQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVA  344 (382)
T ss_dssp             HHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHH
T ss_pred             HHHHHHHHHhCCCCHHHHHhhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccch
Confidence            00       00000000       000000                0000000                      00111


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414          107 DILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus       107 ~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      +...+.+|+.+||+.||++|||++++++|+|+...
T Consensus       345 ~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          345 DYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             HHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             hhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence            22356899999999999999999999999999763

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.92  E-value=1.3e-25  Score=154.93  Aligned_cols=129  Identities=24%  Similarity=0.353  Sum_probs=95.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.....    ....+++.|+|||++.   ...++.++|+||+|+++++|++|.+||.... 
T Consensus       183 ~NIll~~~~~~kL~DfG~a~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~-  257 (348)
T 1u5q_A          183 GNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMN-  257 (348)
T ss_dssp             GGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC-
T ss_pred             HHEEECCCCCEEEeeccCceecCCC----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-
Confidence            5999999999999999998765432    2356899999999884   4567889999999999999999999986222 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                            .............+........   ..+.+++.+||+.||++|||++++++|+|+....+
T Consensus       258 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~~  314 (348)
T 1u5q_A          258 ------AMSALYHIAQNESPALQSGHWS---EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  314 (348)
T ss_dssp             ------HHHHHHHHHHSCCCCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCC
T ss_pred             ------hHHHHHHHHhcCCCCCCCCCCC---HHHHHHHHHHcccChhhCcCHHHHhhChhhhccCC
Confidence                  1222223332222221111111   22478999999999999999999999999987654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=3.2e-25  Score=153.97  Aligned_cols=139  Identities=22%  Similarity=0.211  Sum_probs=93.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.....   .....+|+.|+|||++.+ ..++.++|+||+||++++|++|.+||.......
T Consensus       157 ~NIll~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  233 (367)
T 1cm8_A          157 GNLAVNEDCELKILDFGLARQADSE---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD  233 (367)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSS---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             HHEEEcCCCCEEEEeeecccccccc---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            5999999999999999999875432   223567899999999877 568889999999999999999999986322110


Q ss_pred             C-------CCCchhh------------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S-------SSDPKIM------------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~-------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ...+...            ....+..................+.+|+.+||+.||++|||++++++|+|+..
T Consensus       234 ~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~  313 (367)
T 1cm8_A          234 QLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFES  313 (367)
T ss_dssp             HHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTT
T ss_pred             HHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHh
Confidence            0       0000000            00000000000000000011234578999999999999999999999999987


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      -.
T Consensus       314 ~~  315 (367)
T 1cm8_A          314 LH  315 (367)
T ss_dssp             TC
T ss_pred             hc
Confidence            44

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.92  E-value=2.7e-25  Score=154.49  Aligned_cols=139  Identities=21%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS-   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~-   79 (160)
                      +||+++.++.+||+|||+++...... ......+++.|+|||++.+..++.++|+||+|+++++|++|..||....... 
T Consensus       156 ~NIl~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~  234 (371)
T 2xrw_A          156 SNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQ  234 (371)
T ss_dssp             GGEEECTTSCEEECCCCC-----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHEEEcCCCCEEEEEeeccccccccc-ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            59999999999999999998654322 2233568899999999998888999999999999999999999986322100 


Q ss_pred             ------CCCCch--------hhHHHhhhcCC---------------CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           80 ------SSSDPK--------IMLIDVLDQRL---------------PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        80 ------~~~~~~--------~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                            ....+.        ...........               .+............+.+|+.+||..||++|||++
T Consensus       235 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~  314 (371)
T 2xrw_A          235 WNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVD  314 (371)
T ss_dssp             HHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHH
T ss_pred             HHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHH
Confidence                  000000        00000000000               0111111222244578999999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       315 e~l~hp~~~~  324 (371)
T 2xrw_A          315 EALQHPYINV  324 (371)
T ss_dssp             HHHHSHHHHT
T ss_pred             HHhCCcchhh
Confidence            9999999985

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.92  E-value=2.7e-25  Score=152.16  Aligned_cols=128  Identities=23%  Similarity=0.284  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............|++.|+|||++.+..++.++|+||+|+++|+|++|..||...     
T Consensus       150 ~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~-----  224 (327)
T 3a62_A          150 ENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE-----  224 (327)
T ss_dssp             TTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS-----
T ss_pred             HHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC-----
Confidence            599999999999999999876443333334466899999999998888889999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                        ................+.  ..   ...+.+++.+||+.||++||     +++++++|+|+..
T Consensus       225 --~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~  282 (327)
T 3a62_A          225 --NRKKTIDKILKCKLNLPP--YL---TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRH  282 (327)
T ss_dssp             --SHHHHHHHHHHTCCCCCT--TS---CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSS
T ss_pred             --CHHHHHHHHHhCCCCCCC--CC---CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccC
Confidence              222333333333322221  11   12347899999999999999     8999999999975

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.92  E-value=1.3e-25  Score=154.70  Aligned_cols=135  Identities=20%  Similarity=0.150  Sum_probs=95.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||.+.+. .++.++|+||+|+++|+|++|.+||.....  
T Consensus       141 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~--  218 (346)
T 1ua2_A          141 NNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD--  218 (346)
T ss_dssp             GGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--
T ss_pred             HHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCH--
Confidence            59999999999999999998765444344456689999999998764 367889999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhhc--CC-------------------CCCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPKIMLIDVLDQ--RL-------------------PPPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~-------------------~~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ..........  ..                   .+..+..  .......+.+|+.+||+.||++|||++++++|+
T Consensus       219 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~  293 (346)
T 1ua2_A          219 -----LDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  293 (346)
T ss_dssp             -----HHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             -----HHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcCh
Confidence                 1111111110  00                   0000000  011123467899999999999999999999999


Q ss_pred             hhhccC
Q 040414          137 LITRKT  142 (160)
Q Consensus       137 ~~~~~~  142 (160)
                      |+....
T Consensus       294 ~f~~~~  299 (346)
T 1ua2_A          294 YFSNRP  299 (346)
T ss_dssp             GGTSSS
T ss_pred             hhhcCC
Confidence            998643

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.92  E-value=8.5e-26  Score=153.44  Aligned_cols=140  Identities=24%  Similarity=0.282  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.+..............+++.|+|||.+.+ ..++.++|+||+|++++++++|.+||.......
T Consensus       131 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~  210 (311)
T 4agu_A          131 ENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD  210 (311)
T ss_dssp             GGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            5999999999999999999876544433444568889999999876 456889999999999999999999986322110


Q ss_pred             CCCCchhhHHHhhh------------------cCCCCC--CCH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPKIMLIDVLD------------------QRLPPP--VDQ---KVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~~~~~~~~~------------------~~~~~~--~~~---~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      .    .........                  ...+.+  ...   ........+.+|+.+||+.||++|||++++++|+
T Consensus       211 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp  286 (311)
T 4agu_A          211 Q----LYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHP  286 (311)
T ss_dssp             H----HHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSG
T ss_pred             H----HHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcCh
Confidence            0    000000000                  000000  000   0001122357899999999999999999999999


Q ss_pred             hhhccCcc
Q 040414          137 LITRKTPL  144 (160)
Q Consensus       137 ~~~~~~~~  144 (160)
                      |+......
T Consensus       287 ~f~~~~~~  294 (311)
T 4agu_A          287 YFENIREI  294 (311)
T ss_dssp             GGTTCC--
T ss_pred             HHHhccCH
Confidence            99975433

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.91  E-value=5.1e-25  Score=150.23  Aligned_cols=125  Identities=25%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.+|.+||+|||+++.....   .....||+.|+|||++.+..++.++|+||+|+++|+|++|..||..      
T Consensus       135 ~NIll~~~g~~kL~Dfg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~------  205 (318)
T 1fot_A          135 ENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD------  205 (318)
T ss_dssp             GGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC------
T ss_pred             heEEEcCCCCEEEeecCcceecCCc---cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCC------
Confidence            5999999999999999999865432   2345689999999999988889999999999999999999999862      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                       .................+.  ..   ...+.+++.+||..||++||     +++++++|+|+..
T Consensus       206 -~~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~  264 (318)
T 1fot_A          206 -SNTMKTYEKILNAELRFPP--FF---NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKE  264 (318)
T ss_dssp             -SSHHHHHHHHHHCCCCCCT--TS---CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSS
T ss_pred             -CCHHHHHHHHHhCCCCCCC--CC---CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccC
Confidence             2222333333333332221  11   12347899999999999999     9999999999975

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.91  E-value=2.1e-25  Score=152.61  Aligned_cols=133  Identities=26%  Similarity=0.251  Sum_probs=97.2

Q ss_pred             CceeecCCC----ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNL----EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++    .+||+|||+++...... ......+++.|+|||++.+..++.++|+||+|+++|+|++|..||... 
T Consensus       143 ~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~-  220 (326)
T 2y0a_A          143 ENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-  220 (326)
T ss_dssp             GGEEESCSSSSSCCEEECCCTTCEECCTTS-CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-
T ss_pred             HHEEEecCCCCCCCEEEEECCCCeECCCCC-ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC-
Confidence            599998877    79999999998764332 223456899999999998888889999999999999999999998622 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ................+ ..........+.+|+.+||+.||++|||++++++|+|+....
T Consensus       221 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  279 (326)
T 2y0a_A          221 ------TKQETLANVSAVNYEFE-DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  279 (326)
T ss_dssp             ------SHHHHHHHHHHTCCCCC-HHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCCS
T ss_pred             ------CHHHHHHHHHhcCCCcC-ccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCCc
Confidence                  12222222222222111 011111223457899999999999999999999999998654

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.91  E-value=1.2e-25  Score=155.16  Aligned_cols=135  Identities=22%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.   ++.+||+|||+++..... .......+++.|+|||++.+..++.++|+||+|+++|+|++|..||.... 
T Consensus       177 ~NIll~~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-  254 (349)
T 2w4o_A          177 ENLLYATPAPDAPLKIADFGLSKIVEHQ-VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER-  254 (349)
T ss_dssp             GGEEESSSSTTCCEEECCCC-----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT-
T ss_pred             ccEEEecCCCCCCEEEccCccccccCcc-cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc-
Confidence            5899975   889999999998865432 22234568999999999998888999999999999999999999985221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                           ..................+ ........+.+|+.+||..||++|||++++++|+|+.....
T Consensus       255 -----~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          255 -----GDQFMFRRILNCEYYFISP-WWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAA  314 (349)
T ss_dssp             -----CHHHHHHHHHTTCCCCCTT-TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTTC
T ss_pred             -----ccHHHHHHHHhCCCccCCc-hhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCcc
Confidence                 1111222222222211110 00111223578999999999999999999999999987554

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.91  E-value=1.1e-25  Score=160.28  Aligned_cols=142  Identities=25%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---------------------------ccccccccccccCCccc-ccCCCCCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---------------------------NRTLLAGTYGYIAPELA-YTMVMTEK   52 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---------------------------~~~~~~~~~~~~~Pe~~-~~~~~~~~   52 (160)
                      +|||++.++.+||+|||+++.......                           .....++|+.|+|||++ ....++.+
T Consensus       185 ~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~  264 (458)
T 3rp9_A          185 ANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEA  264 (458)
T ss_dssp             GGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTH
T ss_pred             hhEEECCCCCEeecccccchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcH
Confidence            599999999999999999986542211                           12234679999999976 45568889


Q ss_pred             cCeeehHHHHHHHHh-----------cCCccccccccCCCCCc-------------hhhH---HHhh-------------
Q 040414           53 CDVYSFGVVTLEVLM-----------GKHPRDLLSSLSSSSDP-------------KIML---IDVL-------------   92 (160)
Q Consensus        53 ~di~s~G~~~~~l~~-----------g~~~~~~~~~~~~~~~~-------------~~~~---~~~~-------------   92 (160)
                      +||||+||++|+|++           |.++|.....+......             ...+   ...+             
T Consensus       265 ~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~  344 (458)
T 3rp9_A          265 IDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEK  344 (458)
T ss_dssp             HHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSC
T ss_pred             hHHHHHHHHHHHHHHhccccccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCC
Confidence            999999999999998           55555432211100000             0000   0000             


Q ss_pred             ----------hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           93 ----------DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        93 ----------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                                ..................+.+|+.+||..||++|||++++++|+|+....
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~  404 (458)
T 3rp9_A          345 EDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAHPFFKEVR  404 (458)
T ss_dssp             HHHHHHHTTSCCCCCCCGGGGSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             HHHHHHHHhcCCCCCCCHHHHCCCCCHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcC
Confidence                      00000000000111123457899999999999999999999999999743

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.91  E-value=3.9e-25  Score=150.29  Aligned_cols=131  Identities=25%  Similarity=0.339  Sum_probs=86.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............+++.|+|||.+.+..++.++|+||+|+++|++++|..||...     
T Consensus       168 ~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~-----  242 (309)
T 3p86_A          168 PNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNL-----  242 (309)
T ss_dssp             GGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTS-----
T ss_pred             hhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----
Confidence            599999999999999999986544333334456899999999999888899999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                        ..................+.....   .+.+++.+||+.||++|||++++++.+....+
T Consensus       243 --~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~  298 (309)
T 3p86_A          243 --NPAQVVAAVGFKCKRLEIPRNLNP---QVAAIIEGCWTNEPWKRPSFATIMDLLRPLIK  298 (309)
T ss_dssp             --CHHHHHHHHHHSCCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC
T ss_pred             --CHHHHHHHHHhcCCCCCCCccCCH---HHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence              222222222112222222222211   24789999999999999999999997655443

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.91  E-value=8.2e-26  Score=155.55  Aligned_cols=136  Identities=21%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             CceeecCC----CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSN----LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~----~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||++..+    +.+||+|||+++.............+|+.|+|||++.+..++.++|+||+|+++|+|++|..||....
T Consensus       145 ~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~  224 (342)
T 2qr7_A          145 SNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGP  224 (342)
T ss_dssp             GGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSST
T ss_pred             HHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCC
Confidence            58998432    35999999999876554444445678999999999987778889999999999999999999986321


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          ..................+.. ........+.+|+.+||+.||++|||++++++|+|+...
T Consensus       225 ----~~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~~  284 (342)
T 2qr7_A          225 ----DDTPEEILARIGSGKFSLSGG-YWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVHW  284 (342)
T ss_dssp             ----TSCHHHHHHHHHHCCCCCCST-TTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHTG
T ss_pred             ----cCCHHHHHHHHccCCcccCcc-ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecCc
Confidence                111222223332232222110 001112235789999999999999999999999999763

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.91  E-value=4.1e-25  Score=153.60  Aligned_cols=128  Identities=22%  Similarity=0.281  Sum_probs=97.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.............||+.|+|||++.+..++.++|+||+|+++|+|++|.+||...     
T Consensus       168 ~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~-----  242 (373)
T 2r5t_A          168 ENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR-----  242 (373)
T ss_dssp             GGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-----
T ss_pred             HHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC-----
Confidence            599999999999999999986444434445567999999999999888899999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCH----HHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTM----QYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~----~~~~~~~~~~~  140 (160)
                        ................+.  ..   ...+.+++.+||+.||++||++    ++++.|+|+..
T Consensus       243 --~~~~~~~~i~~~~~~~~~--~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~  299 (373)
T 2r5t_A          243 --NTAEMYDNILNKPLQLKP--NI---TNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSL  299 (373)
T ss_dssp             --BHHHHHHHHHHSCCCCCS--SS---CHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTT
T ss_pred             --CHHHHHHHHHhcccCCCC--CC---CHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccC
Confidence              222333333333222111  11   1234789999999999999996    69999999975

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.91  E-value=3.9e-25  Score=153.39  Aligned_cols=131  Identities=24%  Similarity=0.328  Sum_probs=94.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC------CCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM------VMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||++..+.... ......|++.|+|||++.+.      .++.++|+||+|+++|+|++|..||..
T Consensus       229 ~NIl~~~~~~ikl~DfG~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~  307 (365)
T 2y7j_A          229 ENILLDDNMQIRLSDFGFSCHLEPGE-KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWH  307 (365)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HHEEECCCCCEEEEecCcccccCCCc-ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCC
Confidence            59999999999999999988665332 23345689999999988643      467789999999999999999999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ................+ ..........+.+++.+||+.||++|||++++++|+|+.+
T Consensus       308 ~-------~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          308 R-------RQILMLRMIMEGQYQFS-SPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             S-------SHHHHHHHHHHTCCCCC-HHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             C-------CHHHHHHHHHhCCCCCC-CcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccCC
Confidence            1       12222222222222211 1111112234578999999999999999999999999863

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.91  E-value=1.2e-25  Score=152.88  Aligned_cols=125  Identities=22%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||++....... ......||+.|+|||++.+ .++.++|+||+|++++++++|..++....    
T Consensus       186 ~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~----  259 (311)
T 3p1a_A          186 ANIFLGPRGRCKLGDFGLLVELGTAG-AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGE----  259 (311)
T ss_dssp             GGEEECGGGCEEECCCTTCEECC-------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHH----
T ss_pred             HHEEECCCCCEEEccceeeeecccCC-CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCcc----
Confidence            59999999999999999988654332 2334568999999999876 67889999999999999999976653211    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ..........+.   .........+.+++.+||+.||++|||++++++|+|++.
T Consensus       260 ------~~~~~~~~~~~~---~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          260 ------GWQQLRQGYLPP---EFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             ------HHHHHTTTCCCH---HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             ------HHHHHhccCCCc---ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence                  111111111111   011111234678999999999999999999999999864

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.91  E-value=1.7e-25  Score=158.29  Aligned_cols=141  Identities=23%  Similarity=0.184  Sum_probs=88.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----------------------ccccccccccccCCccc-ccCCCCCCcCeee
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----------------------NRTLLAGTYGYIAPELA-YTMVMTEKCDVYS   57 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----------------------~~~~~~~~~~~~~Pe~~-~~~~~~~~~di~s   57 (160)
                      +|||++.++.+||+|||+++.......                      ......+|+.|+|||++ ....++.++||||
T Consensus       158 ~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwS  237 (432)
T 3n9x_A          158 ANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWS  237 (432)
T ss_dssp             GGEEECTTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHH
T ss_pred             HHeEECCCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccch
Confidence            599999999999999999987643221                      12346789999999986 4556888999999


Q ss_pred             hHHHHHHHHhcCCccccccccCCCCC--------------------------------------------chhhHHHhhh
Q 040414           58 FGVVTLEVLMGKHPRDLLSSLSSSSD--------------------------------------------PKIMLIDVLD   93 (160)
Q Consensus        58 ~G~~~~~l~~g~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~   93 (160)
                      +||++|+|++|..||...........                                            ........+.
T Consensus       238 lG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~  317 (432)
T 3n9x_A          238 TGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIK  317 (432)
T ss_dssp             HHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHH
Confidence            99999999986555432111000000                                            0000000000


Q ss_pred             ---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           94 ---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        94 ---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         ...+.+...........+.+|+.+||+.||++|||++++++|+|+...
T Consensus       318 ~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  368 (432)
T 3n9x_A          318 LFPHRKPINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLKDV  368 (432)
T ss_dssp             TSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTT
T ss_pred             hCCCCCCCCHHHHCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhc
Confidence               001100000001122346789999999999999999999999999974

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.91  E-value=6.7e-25  Score=150.96  Aligned_cols=134  Identities=25%  Similarity=0.241  Sum_probs=95.3

Q ss_pred             CceeecCCC--ceEEcccccceeccCCCC----ccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSNL--EAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~~--~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +||+++.++  .+||+|||+++.+.....    ......+++.|+|||.+.+  ..++.++|+||+|+++|+|++|..||
T Consensus       197 ~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf  276 (345)
T 3hko_A          197 ENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPF  276 (345)
T ss_dssp             GGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             hhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            599998766  899999999986543211    1234568999999999875  45778999999999999999999998


Q ss_pred             ccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..       .................+.+ ........+.+++.+||+.||++|||+.++++|+|+..-.
T Consensus       277 ~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~  338 (345)
T 3hko_A          277 PG-------VNDADTISQVLNKKLCFENP-NYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQFS  338 (345)
T ss_dssp             CC-------SSHHHHHHHHHHCCCCTTSG-GGGGSCHHHHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTS
T ss_pred             CC-------CChHHHHHHHHhcccccCCc-ccccCCHHHHHHHHHHcCCChhHCCCHHHHhcChhhccCh
Confidence            62       22233334444443332221 1111223457899999999999999999999999998743

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.91  E-value=8.5e-25  Score=150.92  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=96.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.....   .....||+.|+|||++.+..++.++|+||+|+++|+|++|.+||..      
T Consensus       170 ~NIll~~~g~~kL~DFg~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~------  240 (350)
T 1rdq_E          170 ENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA------  240 (350)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             ceEEECCCCCEEEcccccceeccCC---cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCC------
Confidence            5999999999999999999875433   2345689999999999988889999999999999999999999862      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                       .................+.  ..   ...+.+++.+||+.||.+||+     ++++++|+|+..
T Consensus       241 -~~~~~~~~~i~~~~~~~p~--~~---~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~  299 (350)
T 1rdq_E          241 -DQPIQIYEKIVSGKVRFPS--HF---SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFAT  299 (350)
T ss_dssp             -SSHHHHHHHHHHCCCCCCT--TC---CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTT
T ss_pred             -CCHHHHHHHHHcCCCCCCC--CC---CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCC
Confidence             2223333333333332221  11   123578999999999999998     999999999975

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.91  E-value=2.7e-25  Score=153.06  Aligned_cols=132  Identities=20%  Similarity=0.295  Sum_probs=89.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCccccc-----------CCCCCCcCeeehHHHHHHHHh
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYT-----------MVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~-----------~~~~~~~di~s~G~~~~~l~~   67 (160)
                      +|||++ ++.+||+|||+++.......  ......||+.|+|||++.+           ..++.++||||+|+++|+|++
T Consensus       137 ~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~  215 (343)
T 3dbq_A          137 ANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY  215 (343)
T ss_dssp             GGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHh
Confidence            589997 57899999999986543322  1234568999999999865           556778999999999999999


Q ss_pred             cCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           68 GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      |..||....      ..................+....   ..+.+++.+||+.||.+|||++++++|+|+....
T Consensus       216 g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  281 (343)
T 3dbq_A          216 GKTPFQQII------NQISKLHAIIDPNHEIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  281 (343)
T ss_dssp             SSCTTTTCC------SHHHHHHHHHCTTSCCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             CCCcchhhh------hHHHHHHHHhcCCcccCCcccCC---HHHHHHHHHHcCCChhHCCCHHHHHhCccccccC
Confidence            999986211      11122233332222222221111   1246899999999999999999999999998644

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.91  E-value=3.2e-25  Score=154.24  Aligned_cols=132  Identities=19%  Similarity=0.160  Sum_probs=97.2

Q ss_pred             Cceee--cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIIL--NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill--~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||+  +.++.+||+|||+++...... ......+++.|+|||++.+..++.++|+||+|+++|+|++|..||...   
T Consensus       216 ~NIll~~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~---  291 (373)
T 2x4f_A          216 ENILCVNRDAKQIKIIDFGLARRYKPRE-KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD---  291 (373)
T ss_dssp             GGEEEEETTTTEEEECCCSSCEECCTTC-BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS---
T ss_pred             HHEEEecCCCCcEEEEeCCCceecCCcc-ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC---
Confidence            58998  567899999999998765432 223346899999999998888888999999999999999999998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          ................+. .........+.+|+.+||+.||.+|||++++++|+|+...
T Consensus       292 ----~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~  349 (373)
T 2x4f_A          292 ----NDAETLNNILACRWDLED-EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDH  349 (373)
T ss_dssp             ----SHHHHHHHHHHTCCCSCS-GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCH
T ss_pred             ----CHHHHHHHHHhccCCCCh-hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCC
Confidence                222333333333322211 1111122345789999999999999999999999999864

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.91  E-value=3e-25  Score=153.84  Aligned_cols=132  Identities=23%  Similarity=0.259  Sum_probs=96.1

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++   .+||+|||++....... ......|++.|+|||++.+..++.++|+||+|+++|+|++|.+||...  
T Consensus       157 ~NIll~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~--  233 (362)
T 2bdw_A          157 ENLLLASKAKGAAVKLADFGLAIEVNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--  233 (362)
T ss_dssp             GGEEESCSSTTCCEEECCCTTCBCCTTCC-SCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--
T ss_pred             HHEEEecCCCCCCEEEeecCcceEecCCc-ccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--
Confidence            599998654   59999999998655332 233456899999999999888899999999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           ................+.. ........+.+|+.+||+.||++|||++++++|+|+...
T Consensus       234 -----~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~  291 (362)
T 2bdw_A          234 -----DQHRLYAQIKAGAYDYPSP-EWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNR  291 (362)
T ss_dssp             -----SHHHHHHHHHHTCCCCCTT-GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHTH
T ss_pred             -----CHHHHHHHHHhCCCCCCcc-cccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCCC
Confidence                 2222233333332222211 111112235789999999999999999999999999753

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.91  E-value=2.8e-25  Score=151.92  Aligned_cols=127  Identities=20%  Similarity=0.257  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC------------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS------------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~------------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||+++.++.+||+|||+++.......            ......+++.|+|||.+.+..++.++|+||+|+++++|++|
T Consensus       193 ~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~  272 (332)
T 3qd2_B          193 SNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYS  272 (332)
T ss_dssp             GGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSC
T ss_pred             ccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHc
Confidence            599999999999999999987654321            12234689999999999988889999999999999999998


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..++....          .........   ..+.........+.+++.+||+.||++|||++++++|+|+..
T Consensus       273 ~~~~~~~~----------~~~~~~~~~---~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          273 FSTQMERV----------RIITDVRNL---KFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             CCCHHHHH----------HHHHHHHTT---CCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred             CCChhHHH----------HHHHHhhcc---CCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhc
Confidence            77753111          111111111   122333333445678999999999999999999999999864

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.91  E-value=3e-25  Score=154.03  Aligned_cols=139  Identities=19%  Similarity=0.180  Sum_probs=85.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++.....   .....+++.|+|||++.+ ..++.++|+||+||++++|++|.+||.......
T Consensus       161 ~NIll~~~~~~kL~DFG~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  237 (367)
T 2fst_X          161 SNLAVNEDCELKILDFGLARHTADE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID  237 (367)
T ss_dssp             GGEEECTTCCEEECC------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             hhEEECCCCCEEEeecccccccccc---CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            5999999999999999999865432   223568899999999876 567889999999999999999999986322110


Q ss_pred             C--------C--------CCchhhHHHhhhc---CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S--------S--------SDPKIMLIDVLDQ---RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~--------~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .        +        ..........+..   ....+...........+.+|+.+||..||++|||++++++|+|+..
T Consensus       238 ~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~  317 (367)
T 2fst_X          238 QLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ  317 (367)
T ss_dssp             HHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTT
T ss_pred             HHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhh
Confidence            0        0        0000000000000   0000000000111234678999999999999999999999999987


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      -.
T Consensus       318 ~~  319 (367)
T 2fst_X          318 YH  319 (367)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.91  E-value=3.5e-25  Score=152.79  Aligned_cols=136  Identities=18%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC----CccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS----SNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||+++.+....    .......+++.|+|||++.+. .++.++|+||+|+++++|++|.+||...
T Consensus       153 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  232 (351)
T 3mi9_A          153 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  232 (351)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             HHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC
Confidence            59999999999999999998654221    122335678999999988764 4688999999999999999999998632


Q ss_pred             cccCCCCCchhhHHH--hhhcCCCCCCC----------------------HHHHH---HHHHHHHHHHhhhccCCCCCCC
Q 040414           76 SSLSSSSDPKIMLID--VLDQRLPPPVD----------------------QKVIQ---DILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~--~~~~~~~~~~~----------------------~~~~~---~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      ..       ......  ......+....                      .....   ....+.+|+.+||+.||++|||
T Consensus       233 ~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  305 (351)
T 3mi9_A          233 TE-------QHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRID  305 (351)
T ss_dssp             SH-------HHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCC
T ss_pred             Ch-------HHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCC
Confidence            11       111111  01111111100                      00000   0223678999999999999999


Q ss_pred             HHHHHHHHhhhccCc
Q 040414          129 MQYVSQEFLITRKTP  143 (160)
Q Consensus       129 ~~~~~~~~~~~~~~~  143 (160)
                      ++++++|+|+.....
T Consensus       306 ~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          306 SDDALNHDFFWSDPM  320 (351)
T ss_dssp             HHHHHTSGGGGSSSC
T ss_pred             HHHHhCCCCcCCCCC
Confidence            999999999987543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.91  E-value=7.7e-25  Score=146.97  Aligned_cols=135  Identities=23%  Similarity=0.260  Sum_probs=96.9

Q ss_pred             CceeecCCCc---eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLE---AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~---~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.   +||+|||.+....... ......+++.|+|||.+.+..++.++|+||+|++++++++|..||...  
T Consensus       134 ~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~--  210 (284)
T 3kk8_A          134 ENLLLASKAKGAAVKLADFGLAIEVNDSE-AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE--  210 (284)
T ss_dssp             GGEEESSSSTTCCEEECCCTTCEECCSSC-BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS--
T ss_pred             HHEEEecCCCCCcEEEeeceeeEEcccCc-cccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC--
Confidence            5899986655   9999999997654332 223456889999999999888889999999999999999999998522  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                           ................+... .......+.+++.+||+.||++|||++++++|+|+......
T Consensus       211 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~  271 (284)
T 3kk8_A          211 -----DQHRLYAQIKAGAYDYPSPE-WDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRERV  271 (284)
T ss_dssp             -----SHHHHHHHHHHTCCCCCTTT-TTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCCG
T ss_pred             -----chhHHHHHHHhccccCCchh-hcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCChhH
Confidence                 22222222222222211110 00111235789999999999999999999999999985543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.91  E-value=4.1e-25  Score=155.78  Aligned_cols=134  Identities=22%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.++   .+||+|||+++..... .......|++.|+|||++.+   ..++.++|+||+|+++|+|++|.+||..
T Consensus       268 ~NIll~~~~~~~~~kl~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~  346 (419)
T 3i6u_A          268 ENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE  346 (419)
T ss_dssp             GGEEESSSSSSCCEEECCSSTTTSCC------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HhEEEecCCCcceEEEeecccceecCCC-ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            599997544   5999999999865432 22334668999999999853   4567789999999999999999999963


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ...       .......+........+.........+.+|+.+||+.||++|||++++++|+|+....
T Consensus       347 ~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          347 HRT-------QVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             CSS-------SCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred             Ccc-------hHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence            221       1112222222111111111112233467899999999999999999999999997643

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=148.10  Aligned_cols=133  Identities=25%  Similarity=0.355  Sum_probs=98.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+..............+++.|+|||.+.+..++.++|+||+|+++|+|++|..||....    
T Consensus       154 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  229 (314)
T 3com_A          154 GNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIH----  229 (314)
T ss_dssp             GGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSC----
T ss_pred             HHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCC----
Confidence            5999999999999999999876544333344568889999999988888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCC--CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPV--DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                         ........... .....  +...   ...+.+++.+||+.||.+|||++++++|+|+......
T Consensus       230 ---~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~~~  288 (314)
T 3com_A          230 ---PMRAIFMIPTN-PPPTFRKPELW---SDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGV  288 (314)
T ss_dssp             ---HHHHHHHHHHS-CCCCCSSGGGS---CHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCCCG
T ss_pred             ---hHHHHHHHhcC-CCcccCCcccC---CHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCCcc
Confidence               11111111111 11111  1111   1235789999999999999999999999999975533

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.91  E-value=1.5e-24  Score=154.87  Aligned_cols=129  Identities=21%  Similarity=0.315  Sum_probs=97.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++..... .......|++.|+|||++.+..+ +.++|+||+|+++|+|++|..||...    
T Consensus       145 ~NIll~~~~~vkL~DFG~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~----  219 (476)
T 2y94_A          145 ENVLLDAHMNAKIADFGLSNMMSDG-EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD----  219 (476)
T ss_dssp             GGEEECTTCCEEECCCSSCEECCTT-CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS----
T ss_pred             HHEEEecCCCeEEEeccchhhcccc-ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC----
Confidence            5999999999999999999876443 22344568999999999987765 57899999999999999999999622    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ................+..  .   ...+.+|+.+||+.||.+|||++++++|+|+....
T Consensus       220 ---~~~~~~~~i~~~~~~~p~~--~---s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~~  274 (476)
T 2y94_A          220 ---HVPTLFKKICDGIFYTPQY--L---NPSVISLLKHMLQVDPMKRATIKDIREHEWFKQDL  274 (476)
T ss_dssp             ---SSHHHHHHHHTTCCCCCTT--C---CHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTTC
T ss_pred             ---CHHHHHHHHhcCCcCCCcc--C---CHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhcC
Confidence               2223333333332222211  1   12347899999999999999999999999998754

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.91  E-value=3.8e-25  Score=151.17  Aligned_cols=132  Identities=23%  Similarity=0.288  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.+....  .......|++.|+|||++.+..+ +.++|+||+|+++|+|++|..||.....
T Consensus       134 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~  213 (323)
T 3tki_A          134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (323)
T ss_dssp             GGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCT
T ss_pred             HHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCch
Confidence            59999999999999999998654222  22234568999999999987765 6689999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ...............+....   ....+.+|+.+||+.||++|||++++++|+|+...
T Consensus       214 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~  268 (323)
T 3tki_A          214 ------SCQEYSDWKEKKTYLNPWKK---IDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (323)
T ss_dssp             ------TSHHHHHHHTTCTTSTTGGG---SCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             ------HHHHHHHHhcccccCCcccc---CCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence                  11122222222222111111   12234689999999999999999999999999863

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.91  E-value=4.4e-25  Score=154.32  Aligned_cols=132  Identities=20%  Similarity=0.290  Sum_probs=91.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCccccc-----------CCCCCCcCeeehHHHHHHHHh
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYT-----------MVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~-----------~~~~~~~di~s~G~~~~~l~~   67 (160)
                      +|||++ ++.+||+|||+++.+.....  ......||+.|+|||++.+           ..++.++||||+||++|+|++
T Consensus       184 ~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~  262 (390)
T 2zmd_A          184 ANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY  262 (390)
T ss_dssp             GGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHH
T ss_pred             HHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHH
Confidence            599996 58899999999986643322  1234568999999999865           346778999999999999999


Q ss_pred             cCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           68 GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      |..||....      ..................+....   ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       263 G~~Pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          263 GKTPFQQII------NQISKLHAIIDPNHEIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             SSCTTTTCC------CHHHHHHHHHCTTSCCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             CCCcchhhh------HHHHHHHHHhCccccCCCCccch---HHHHHHHHHHcccChhhCCCHHHHhhCcCccccC
Confidence            999986221      11122333333332222221111   2347899999999999999999999999998644

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.91  E-value=3.3e-25  Score=148.40  Aligned_cols=130  Identities=27%  Similarity=0.392  Sum_probs=73.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+..............+++.|+|||.+.+..++.++|+||+|++++++++|..||......  
T Consensus       141 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--  218 (278)
T 3cok_A          141 SNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVK--  218 (278)
T ss_dssp             GGEEECTTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC--
T ss_pred             HHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHH--
Confidence            599999999999999999987653333333456888999999998888888999999999999999999998633211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           .............+  ...   ...+.+++.+||+.||++|||++++++|+|+....
T Consensus       219 -----~~~~~~~~~~~~~~--~~~---~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          219 -----NTLNKVVLADYEMP--SFL---SIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             ----------CCSSCCCCC--TTS---CHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             -----HHHHHHhhcccCCc--ccc---CHHHHHHHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence                 11111111111111  111   12347899999999999999999999999998644

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.91  E-value=9.3e-25  Score=146.33  Aligned_cols=129  Identities=29%  Similarity=0.377  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.++|+|||.+......  ......+++.|+|||.+.+..++.++|+||+|++++++++|..||...     
T Consensus       138 ~Nili~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-----  210 (279)
T 3fdn_A          138 ENLLLGSAGELKIADFGWSVHAPSS--RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN-----  210 (279)
T ss_dssp             GGEEECTTSCEEECSCCEESCC----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS-----
T ss_pred             HhEEEcCCCCEEEEeccccccCCcc--cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCC-----
Confidence            5999999999999999988644322  223356788999999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                        ................+  ...   ...+.+++.+||+.||++|||++++++|+|+.....
T Consensus       211 --~~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~~  266 (279)
T 3fdn_A          211 --TYQETYKRISRVEFTFP--DFV---TEGARDLISRLLKHNPSQRPMLREVLEHPWITANSS  266 (279)
T ss_dssp             --SHHHHHHHHHHTCCCCC--TTS---CHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHCS
T ss_pred             --cHHHHHHHHHhCCCCCC--CcC---CHHHHHHHHHHhccChhhCCCHHHHhhCccccCCcc
Confidence              12222222222222211  111   122468999999999999999999999999997543

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.91  E-value=4.7e-25  Score=159.28  Aligned_cols=132  Identities=24%  Similarity=0.323  Sum_probs=98.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.+...........||+.|+|||++.+..++.++|+||+||++|+|++|.+||.....   
T Consensus       318 ~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~---  394 (543)
T 3c4z_A          318 ENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGE---  394 (543)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTC---
T ss_pred             HHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCcc---
Confidence            59999999999999999998765544444456799999999999988889999999999999999999999963321   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                      ..................+  ...   ...+.+++.+||+.||++||+     +++++.|+||..
T Consensus       395 ~~~~~~~~~~i~~~~~~~p--~~~---s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~  454 (543)
T 3c4z_A          395 KVENKELKQRVLEQAVTYP--DKF---SPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRD  454 (543)
T ss_dssp             CCCHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTT
T ss_pred             chhHHHHHHHHhhcccCCC--ccc---CHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccC
Confidence            1111222222333322221  111   123478999999999999996     589999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.91  E-value=4.8e-25  Score=150.63  Aligned_cols=132  Identities=23%  Similarity=0.341  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||++..............+++.|+|||.+.     ...++.++|+||+|+++|++++|..||...
T Consensus       158 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          158 QNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  237 (326)
T ss_dssp             GGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            599999999999999999876544333333456889999999986     455778899999999999999999998622


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .       .............+.......   ...+.+++.+||+.||.+|||++++++|+|+....
T Consensus       238 ~-------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~  294 (326)
T 2x7f_A          238 H-------PMRALFLIPRNPAPRLKSKKW---SKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQP  294 (326)
T ss_dssp             C-------HHHHHHHHHHSCCCCCSCSCS---CHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCT
T ss_pred             c-------HHHHHHHhhcCccccCCcccc---CHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCc
Confidence            2       112222222221111111111   12347899999999999999999999999998643

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.91  E-value=1.9e-24  Score=145.18  Aligned_cols=135  Identities=22%  Similarity=0.263  Sum_probs=98.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+......  ......+++.|+|||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       143 ~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~----  216 (284)
T 2vgo_A          143 ENLLMGYKGELKIADFGWSVHAPSL--RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPS----  216 (284)
T ss_dssp             GGEEECTTCCEEECCCTTCEECSSS--CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS----
T ss_pred             HHEEEcCCCCEEEecccccccCccc--ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCC----
Confidence            5999999999999999998765432  2233568889999999998888899999999999999999999986221    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccccccc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAA  149 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~~~~~  149 (160)
                         ...............+  ...   ...+.+++.+||+.||.+|||++++++|+|+.........+.
T Consensus       217 ---~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~~~~~p~~  277 (284)
T 2vgo_A          217 ---HTETHRRIVNVDLKFP--PFL---SDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLPPV  277 (284)
T ss_dssp             ---HHHHHHHHHTTCCCCC--TTS---CHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHCCCCCCCC
T ss_pred             ---HhHHHHHHhccccCCC--CcC---CHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhccccCCCc
Confidence               1222222222222211  111   123478999999999999999999999999997554444433

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.5e-25  Score=157.51  Aligned_cols=130  Identities=22%  Similarity=0.252  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCccccc-------CCCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYT-------MVMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~-------~~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +|||++.++.+||+|||+++........ .....||+.|+|||++..       ..++.++|+||+||++|+|++|.+||
T Consensus       191 ~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf  270 (412)
T 2vd5_A          191 DNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPF  270 (412)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCC
Confidence            5999999999999999999876543322 234578999999999873       45788999999999999999999999


Q ss_pred             ccccccCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC---CCHHHHHHHHhhhc
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSR---PTMQYVSQEFLITR  140 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R---ps~~~~~~~~~~~~  140 (160)
                      ...       ............  ....+.  ........+.+|+.+||. +|.+|   ++++++++|+||..
T Consensus       271 ~~~-------~~~~~~~~i~~~~~~~~~p~--~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~  333 (412)
T 2vd5_A          271 YAD-------STAETYGKIVHYKEHLSLPL--VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFG  333 (412)
T ss_dssp             CCS-------SHHHHHHHHHTHHHHCCCC------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTT
T ss_pred             CCC-------CHHHHHHHHHhcccCcCCCc--cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCC
Confidence            622       222222222211  111110  001112235789999999 99998   69999999999976

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.91  E-value=4e-25  Score=149.40  Aligned_cols=135  Identities=21%  Similarity=0.268  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccC------CCCCCcCeeehHHHHHHHHhc--
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTM------VMTEKCDVYSFGVVTLEVLMG--   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~------~~~~~~di~s~G~~~~~l~~g--   68 (160)
                      +|||++.++.+||+|||+++........    .....+|+.|+|||.+.+.      .++.++|+||+|+++|+|++|  
T Consensus       142 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~  221 (301)
T 3q4u_A          142 KNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMV  221 (301)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HhEEEcCCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhc
Confidence            5999999999999999999865443222    1234689999999998766      344689999999999999999  


Q ss_pred             --------CCccccccccCCCCCchhhHHHhh-hcCCCCCCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           69 --------KHPRDLLSSLSSSSDPKIMLIDVL-DQRLPPPVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        69 --------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                              ..||......   ........... .....+..+.  ........+.+++.+||+.||++|||++++++.+.
T Consensus       222 ~~~~~~~~~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~  298 (301)
T 3q4u_A          222 SNGIVEDYKPPFYDVVPN---DPSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLT  298 (301)
T ss_dssp             BTTBCCCCCCTTTTTSCS---SCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHH
T ss_pred             CccccccccccccccCCC---CcchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHh
Confidence                    6666422211   11111222221 1122222221  11223345688999999999999999999999875


Q ss_pred             h
Q 040414          138 I  138 (160)
Q Consensus       138 ~  138 (160)
                      .
T Consensus       299 ~  299 (301)
T 3q4u_A          299 K  299 (301)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.91  E-value=9.8e-25  Score=151.68  Aligned_cols=130  Identities=24%  Similarity=0.214  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.++.....   .....+++.|+|||.+.+ ..++.++|+||+|+++++|++|..||.....  
T Consensus       173 ~NIll~~~~~~kL~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--  247 (371)
T 4exu_A          173 GNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDY--  247 (371)
T ss_dssp             GGEEECTTCCEEECSTTCC-----------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHeEECCCCCEEEEecCcccccccC---cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCh--
Confidence            5999999999999999999865432   223567899999999877 5678899999999999999999999863221  


Q ss_pred             CCCCchhhHHHhh-----------------------h---cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           80 SSSDPKIMLIDVL-----------------------D---QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        80 ~~~~~~~~~~~~~-----------------------~---~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                           ........                       .   .................+.+|+.+||+.||++|||+++++
T Consensus       248 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell  322 (371)
T 4exu_A          248 -----LDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQAL  322 (371)
T ss_dssp             -----HHHHHHHHHHHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHH
T ss_pred             -----HHHHHHHHHHhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHh
Confidence                 11111110                       0   0000000000011123468899999999999999999999


Q ss_pred             HHHhhhc
Q 040414          134 QEFLITR  140 (160)
Q Consensus       134 ~~~~~~~  140 (160)
                      +|+|+..
T Consensus       323 ~hp~f~~  329 (371)
T 4exu_A          323 THPFFEP  329 (371)
T ss_dssp             TSGGGTT
T ss_pred             cCccccc
Confidence            9999985

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.91  E-value=8.9e-25  Score=147.99  Aligned_cols=131  Identities=27%  Similarity=0.441  Sum_probs=97.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+..............+++.|+|||.+.+..++.++|+||+|++++++++|..||....    
T Consensus       148 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  223 (303)
T 3a7i_A          148 ANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELH----  223 (303)
T ss_dssp             GGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSC----
T ss_pred             heEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcC----
Confidence            5999999999999999999876544433444568889999999988888889999999999999999999986321    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ......... ............   ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       224 ---~~~~~~~~~-~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  278 (303)
T 3a7i_A          224 ---PMKVLFLIP-KNNPPTLEGNYS---KPLKEFVEACLNKEPSFRPTAKELLKHKFILRNA  278 (303)
T ss_dssp             ---HHHHHHHHH-HSCCCCCCSSCC---HHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHHC
T ss_pred             ---HHHHHHHhh-cCCCCCCccccC---HHHHHHHHHHcCCChhhCcCHHHHhhChhhhcCC
Confidence               111111111 111111111111   1247899999999999999999999999998643

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.91  E-value=6.7e-26  Score=160.26  Aligned_cols=129  Identities=22%  Similarity=0.296  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.++.+||+|||+++........ .....||+.|+|||++.     ...++.++|+||+|+++|+|++|.+||..
T Consensus       204 ~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~  283 (437)
T 4aw2_A          204 DNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYA  283 (437)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             HHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCC
Confidence            5999999999999999999866543322 23357999999999986     44578899999999999999999999962


Q ss_pred             ccccCCCCCchhhHHHhhh----cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLD----QRLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~  140 (160)
                      .       .........+.    ...+... ..   ....+.+|+.+||..+|++  |++++++++|+||..
T Consensus       284 ~-------~~~~~~~~i~~~~~~~~~p~~~-~~---~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~  344 (437)
T 4aw2_A          284 E-------SLVETYGKIMNHKERFQFPTQV-TD---VSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSG  344 (437)
T ss_dssp             S-------SHHHHHHHHHTHHHHCCCCSSC-CC---SCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTT
T ss_pred             C-------ChhHHHHhhhhccccccCCccc-cc---CCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCC
Confidence            2       22222222221    1222111 01   1123478999999888877  999999999999986

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.91  E-value=5e-25  Score=154.24  Aligned_cols=133  Identities=22%  Similarity=0.240  Sum_probs=93.6

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++ .++.+||+|||+++...... ......+++.|+|||++.+. .++.++|+||+||++|+|++|.+||..... 
T Consensus       170 ~Nill~~~~~~~kL~DFG~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~-  247 (394)
T 4e7w_A          170 QNLLLDPPSGVLKLIDFGSAKILIAGE-PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESG-  247 (394)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCTTC-CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             HHEEEcCCCCcEEEeeCCCcccccCCC-CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            599999 78999999999998764332 23345688999999998765 478899999999999999999999963221 


Q ss_pred             CCCCCchhhHHHhhh-------------------cCCCC--CCCHHH---HHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           79 SSSSDPKIMLIDVLD-------------------QRLPP--PVDQKV---IQDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~-------------------~~~~~--~~~~~~---~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                            .......+.                   ...+.  +.+...   ......+.+|+.+||+.||.+|||++++++
T Consensus       248 ------~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          248 ------IDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             ------HHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ------HHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence                  111111100                   00000  000000   001224678999999999999999999999


Q ss_pred             HHhhhcc
Q 040414          135 EFLITRK  141 (160)
Q Consensus       135 ~~~~~~~  141 (160)
                      |+|+..-
T Consensus       322 hp~f~~~  328 (394)
T 4e7w_A          322 HPFFDEL  328 (394)
T ss_dssp             SGGGSTT
T ss_pred             Chhhhhh
Confidence            9999863

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.90  E-value=1.1e-24  Score=149.60  Aligned_cols=130  Identities=28%  Similarity=0.430  Sum_probs=97.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||+++.............+++.|++||.+.+..++.++|+||+|+++|+|++|..||...     
T Consensus       170 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-----  244 (335)
T 2owb_A          170 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----  244 (335)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----
T ss_pred             hhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC-----
Confidence            599999999999999999987654433344456889999999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        ................+.  ..   ...+.+++.+||+.||++|||++++++|+|+....
T Consensus       245 --~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          245 --CLKETYLRIKKNEYSIPK--HI---NPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             --SHHHHHHHHHHTCCCCCT--TS---CHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             --CHHHHHHHHhcCCCCCCc--cC---CHHHHHHHHHHccCChhHCcCHHHHhcCccccCCC
Confidence              112222222222222111  11   11246799999999999999999999999998754

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.90  E-value=1.3e-24  Score=146.67  Aligned_cols=130  Identities=28%  Similarity=0.430  Sum_probs=97.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+..............+++.|+|||.+.+..++.++|+||+|++++++++|..||...     
T Consensus       144 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~-----  218 (294)
T 2rku_A          144 GNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS-----  218 (294)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS-----
T ss_pred             HhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC-----
Confidence            599999999999999999987654433334456888999999998888888999999999999999999998622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                        ................+.  ..   ...+.+++.+||+.||++|||++++++|+|+....
T Consensus       219 --~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  273 (294)
T 2rku_A          219 --CLKETYLRIKKNEYSIPK--HI---NPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  273 (294)
T ss_dssp             --SHHHHHHHHHTTCCCCCT--TS---CHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             --CHHHHHHHHhhccCCCcc--cc---CHHHHHHHHHHcccChhhCcCHHHHhhChheecCC
Confidence              112222222222222111  11   12346799999999999999999999999998754

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.90  E-value=1.1e-24  Score=151.03  Aligned_cols=134  Identities=22%  Similarity=0.193  Sum_probs=93.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++........   .....+++.|+|||++.+. .++.++|+||+|+++|+|++|.+||....
T Consensus       157 ~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  236 (364)
T 3qyz_A          157 SNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  236 (364)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             HhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC
Confidence            5999999999999999999866433221   2335689999999987654 47889999999999999999999986322


Q ss_pred             ccCCCCCchhhHHHhh-----------------------hcCC-CCCCCHHH--HHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           77 SLSSSSDPKIMLIDVL-----------------------DQRL-PPPVDQKV--IQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~-----------------------~~~~-~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      ..       .......                       .... ........  ......+.+|+.+||+.||++|||++
T Consensus       237 ~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~  309 (364)
T 3qyz_A          237 YL-------DQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVE  309 (364)
T ss_dssp             GG-------GHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             hH-------HHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHH
Confidence            11       1111110                       0000 00000000  01123457899999999999999999


Q ss_pred             HHHHHHhhhcc
Q 040414          131 YVSQEFLITRK  141 (160)
Q Consensus       131 ~~~~~~~~~~~  141 (160)
                      ++++|+|+...
T Consensus       310 e~l~hp~~~~~  320 (364)
T 3qyz_A          310 QALAHPYLEQY  320 (364)
T ss_dssp             HHHTSGGGTTT
T ss_pred             HHhcCcchhhc
Confidence            99999999874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.90  E-value=3.3e-25  Score=154.36  Aligned_cols=121  Identities=15%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-----------CCCCCcCeeehHHHHHHHHhcC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-----------VMTEKCDVYSFGVVTLEVLMGK   69 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-----------~~~~~~di~s~G~~~~~l~~g~   69 (160)
                      +|||++.++.+||+|||+++....   ......| +.|+|||++.+.           .++.++|+||+|+++|+|++|.
T Consensus       235 ~NIll~~~~~~kL~DFG~a~~~~~---~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~  310 (377)
T 3byv_A          235 VDIVLDQRGGVFLTGFEHLVRDGA---RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCAD  310 (377)
T ss_dssp             GGEEECTTCCEEECCGGGCEETTC---EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHEEEcCCCCEEEEechhheecCC---cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCC
Confidence            599999999999999999986432   2233456 889999999877           7888999999999999999999


Q ss_pred             CccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           70 HPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      .||........       ..... .. ....+       ..+.+++.+||+.||++|||++++++|+|+...
T Consensus       311 ~Pf~~~~~~~~-------~~~~~-~~-~~~~~-------~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~  366 (377)
T 3byv_A          311 LPITKDAALGG-------SEWIF-RS-CKNIP-------QPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  366 (377)
T ss_dssp             CCC------CC-------SGGGG-SS-CCCCC-------HHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHH
T ss_pred             CCCcccccccc-------hhhhh-hh-ccCCC-------HHHHHHHHHHcCCCchhCCCHHHHhhChHHHHH
Confidence            99863332111       01111 11 11222       224789999999999999999999999999863

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.90  E-value=1.2e-25  Score=153.98  Aligned_cols=135  Identities=23%  Similarity=0.242  Sum_probs=89.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.++.............+++.|+|||.+.+. .++.++|+||+|+++|+|++|.+||.....  
T Consensus       153 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--  230 (331)
T 4aaa_A          153 ENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSD--  230 (331)
T ss_dssp             GGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             heEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCc--
Confidence            59999999999999999998665443334445688899999998765 578889999999999999999999863221  


Q ss_pred             CCCCchhhHHHhh--------------------hc-CCC---CCCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           80 SSSDPKIMLIDVL--------------------DQ-RLP---PPVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        80 ~~~~~~~~~~~~~--------------------~~-~~~---~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                           ........                    .. ..+   .....  ........+.+|+.+||+.||++|||+++++
T Consensus       231 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell  305 (331)
T 4aaa_A          231 -----IDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELL  305 (331)
T ss_dssp             -----HHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGG
T ss_pred             -----HHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHh
Confidence                 11111000                    00 000   00000  0001123467899999999999999999999


Q ss_pred             HHHhhhccC
Q 040414          134 QEFLITRKT  142 (160)
Q Consensus       134 ~~~~~~~~~  142 (160)
                      +|+|+....
T Consensus       306 ~hp~f~~~~  314 (331)
T 4aaa_A          306 HHDFFQMDG  314 (331)
T ss_dssp             GSHHHHGGG
T ss_pred             cCchhccCC
Confidence            999998643

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.90  E-value=6.6e-25  Score=150.69  Aligned_cols=123  Identities=21%  Similarity=0.309  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++...... ......+++.|+|||++.+..+ +.++|+||+|+++|++++|..||.......
T Consensus       159 ~NIll~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~  237 (335)
T 3dls_A          159 ENIVIAEDFTIKLIDFGSAAYLERGK-LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV  237 (335)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTC-CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT
T ss_pred             HHEEEcCCCcEEEeecccceECCCCC-ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH
Confidence            59999999999999999998765432 2334568999999999987776 678999999999999999999986322211


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                                   ......+..     ....+.+++.+||+.||++|||++++++|+|+....
T Consensus       238 -------------~~~~~~~~~-----~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          238 -------------EAAIHPPYL-----VSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             -------------TTCCCCSSC-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             -------------hhccCCCcc-----cCHHHHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence                         111111111     111247899999999999999999999999997643

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.90  E-value=5.6e-25  Score=153.58  Aligned_cols=131  Identities=20%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             CceeecC--CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS--NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~--~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.  ++.+||+|||+++...... ......+|+.|+|||++.+..++.++|+||+|+++|+|++|..||....  
T Consensus       178 ~NIll~~~~~~~vkL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~--  254 (387)
T 1kob_A          178 ENIMCETKKASSVKIIDFGLATKLNPDE-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGED--  254 (387)
T ss_dssp             GGEEESSTTCCCEEECCCTTCEECCTTS-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSS--
T ss_pred             HHeEEecCCCCceEEEecccceecCCCc-ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCC--
Confidence            5999974  5779999999998764432 2233568999999999988888899999999999999999999986321  


Q ss_pred             CCCCCchhhHHHhhhcCCC--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLP--PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           ..............  ......   ....+.+|+.+||+.||++|||++++++|+|+....
T Consensus       255 -----~~~~~~~i~~~~~~~~~~~~~~---~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          255 -----DLETLQNVKRCDWEFDEDAFSS---VSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             -----HHHHHHHHHHCCCCCCSSTTTT---SCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             -----HHHHHHHHHhCCCCCCcccccc---CCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCCc
Confidence                 12222222222221  111111   122357899999999999999999999999998744

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.90  E-value=8.1e-25  Score=147.55  Aligned_cols=133  Identities=21%  Similarity=0.383  Sum_probs=92.0

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++. ++.+||+|||.++.............+++.|+|||.+.+..  ++.++|+||+|+++|+|++|..||.....
T Consensus       151 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  230 (295)
T 2clq_A          151 DNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGE  230 (295)
T ss_dssp             GGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSS
T ss_pred             hhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCc
Confidence            5899987 89999999999987654333334456888999999987653  67789999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ..............+..+....   ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       231 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          231 ------PQAAMFKVGMFKVHPEIPESMS---AEAKAFILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             ------HHHHHHHHHHHCCCCCCCTTSC---HHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             ------hhHHHHhhccccccccccccCC---HHHHHHHHHHccCChhhCCCHHHHhcChhhhhcc
Confidence                  1111111111111112221111   2246799999999999999999999999998744

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.90  E-value=2.1e-24  Score=147.29  Aligned_cols=132  Identities=23%  Similarity=0.239  Sum_probs=96.7

Q ss_pred             CceeecCCC----ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNL----EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++    .+||+|||+++...... ......+++.|+|||.+.+..++.++|+||+|+++|+|++|..||... 
T Consensus       144 ~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~-  221 (321)
T 2a2a_A          144 ENIMLLDKNIPIPHIKLIDFGLAHEIEDGV-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD-  221 (321)
T ss_dssp             GGEEESCTTSSSCCEEECCCTTCEECCTTC-CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS-
T ss_pred             HHEEEecCCCCcCCEEEccCccceecCccc-cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC-
Confidence            589999887    79999999998765432 223456899999999998888889999999999999999999998622 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHH-HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKV-IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ...............  ..... ......+.+++.+||+.||++|||++++++|+|+....
T Consensus       222 ------~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~~  280 (321)
T 2a2a_A          222 ------TKQETLANITSVSYD--FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVD  280 (321)
T ss_dssp             ------SHHHHHHHHHTTCCC--CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCSS
T ss_pred             ------CHHHHHHHHHhcccc--cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCCC
Confidence                  122222222222211  11111 11223457899999999999999999999999998643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.90  E-value=1.8e-24  Score=151.21  Aligned_cols=126  Identities=17%  Similarity=0.138  Sum_probs=85.7

Q ss_pred             ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhhHH
Q 040414           10 EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLI   89 (160)
Q Consensus        10 ~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~   89 (160)
                      .+||+|||.++.....   .....+|+.|+|||++.+..++.++||||+||++|+|++|..||......... .......
T Consensus       234 ~~kl~DfG~a~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~-~~~~~~~  309 (397)
T 1wak_A          234 KVKIADLGNACWVHKH---FTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYT-RDEDHIA  309 (397)
T ss_dssp             CEEECCGGGCEETTBC---SCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSC-HHHHHHH
T ss_pred             ceEecccccccccccc---CccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccC-chHHHHH
Confidence            7999999999875432   22346899999999999888899999999999999999999999633221100 0000000


Q ss_pred             Hh--hhcCCC------------------------C--CCC---------HHHHHHHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           90 DV--LDQRLP------------------------P--PVD---------QKVIQDILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        90 ~~--~~~~~~------------------------~--~~~---------~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                      ..  .....+                        .  +..         .........+.+|+.+||+.||++|||++++
T Consensus       310 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~  389 (397)
T 1wak_A          310 LIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAEC  389 (397)
T ss_dssp             HHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHH
T ss_pred             HHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHH
Confidence            00  000000                        0  000         0012223456899999999999999999999


Q ss_pred             HHHHhhh
Q 040414          133 SQEFLIT  139 (160)
Q Consensus       133 ~~~~~~~  139 (160)
                      ++|+|+.
T Consensus       390 l~hp~~~  396 (397)
T 1wak_A          390 LRHPWLN  396 (397)
T ss_dssp             HTSGGGG
T ss_pred             hhCcccc
Confidence            9999986

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.90  E-value=1.3e-24  Score=150.66  Aligned_cols=134  Identities=21%  Similarity=0.298  Sum_probs=85.5

Q ss_pred             CceeecCCCc--eEEcccccceeccCCCCccccccccccccCCcccccCCCCCC-cCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLE--AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEK-CDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~--~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~-~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.  +||+|||+++..... .......|++.|+|||++.+..+..+ +|+||+|+++|+|++|..||.....
T Consensus       145 ~Nill~~~~~~~~kl~Dfg~a~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~  223 (361)
T 3uc3_A          145 ENTLLDGSPAPRLKICDFGYSKSSVLH-SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE  223 (361)
T ss_dssp             GGEEECSSSSCCEEECCCCCC----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----
T ss_pred             HHEEEcCCCCceEEEeecCcccccccc-CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc
Confidence            5999987765  999999998743322 22233568999999999987776544 8999999999999999999963322


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         ..................+.....   ...+.+|+.+||+.||++|||++++++|+|+...
T Consensus       224 ---~~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          224 ---PRDYRKTIQRILSVKYSIPDDIRI---SPECCHLISRIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             ---CCCHHHHHHHHHTTCCCCCTTSCC---CHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             ---HHHHHHHHHHHhcCCCCCCCcCCC---CHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence               111122222232222222211111   1234789999999999999999999999999764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.90  E-value=2.2e-24  Score=147.40  Aligned_cols=137  Identities=31%  Similarity=0.444  Sum_probs=97.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++....... ......+++.|+|||.+.+..++.++|+||+|+++|+|++|..||.......
T Consensus       163 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  242 (326)
T 3uim_A          163 ANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLAN  242 (326)
T ss_dssp             GGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTT
T ss_pred             hhEEECCCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccccccc
Confidence            599999999999999999987653332 2233458999999999988888899999999999999999999996332211


Q ss_pred             CCCCchhh----------HHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIM----------LIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ........          ...............   .....+.+++..||+.||.+|||++++++++....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~~  310 (326)
T 3uim_A          243 DDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD---EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDG  310 (326)
T ss_dssp             TSCSBHHHHHTTTTSSCCSTTSSCTTCTTSCCH---HHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTSS
T ss_pred             ccchhHHHHHHHHhhchhhhhhcChhhccccCH---HHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCcc
Confidence            11110000          011111112222222   23345678999999999999999999999998654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.90  E-value=7e-25  Score=150.07  Aligned_cols=130  Identities=22%  Similarity=0.293  Sum_probs=92.5

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.   ++.+||+|||+++...... ......+++.|+|||.+.+..++.++|+||+|+++|+|++|..||...  
T Consensus       160 ~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~--  236 (327)
T 3lm5_A          160 QNILLSSIYPLGDIKIVDFGMSRKIGHAC-ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE--  236 (327)
T ss_dssp             GGEEESCBTTBCCEEECCGGGCEEC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS--
T ss_pred             HHEEEecCCCCCcEEEeeCccccccCCcc-ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--
Confidence            5899987   7899999999998764332 223356899999999999888889999999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           ............  ..+.+.....   ...+.+++.+||+.||++|||++++++|+|+...
T Consensus       237 -----~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~  294 (327)
T 3lm5_A          237 -----DNQETYLNISQVNVDYSEETFSSV---SQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQW  294 (327)
T ss_dssp             -----SHHHHHHHHHHTCCCCCTTTTTTS---CHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCC
T ss_pred             -----CchHHHHHHHhcccccCchhhccc---CHHHHHHHHHHcCCChhhCcCHHHHhCCHhhccc
Confidence                 122222222211  1222111111   2235789999999999999999999999999863

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.90  E-value=6e-25  Score=154.33  Aligned_cols=131  Identities=22%  Similarity=0.314  Sum_probs=95.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC----CCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV----MTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~----~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.+|.+||+|||+++....... ......||+.|+|||++.+..    ++.++|+||+|+++|+|++|.+||...
T Consensus       197 ~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          197 DNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             HHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            599999999999999999987654322 223567999999999987654    678899999999999999999999622


Q ss_pred             cccCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCC--CCCHHHHHHHHhhhcc
Q 040414           76 SSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKS--RPTMQYVSQEFLITRK  141 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~--Rps~~~~~~~~~~~~~  141 (160)
                             ............  ....+....   ....+.+|+.+||..+|.+  |++++++++|+||...
T Consensus       277 -------~~~~~~~~i~~~~~~~~~p~~~~---~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          277 -------SLVGTYSKIMNHKNSLTFPDDND---ISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             -------SHHHHHHHHHTHHHHCCCCTTCC---CCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             -------ChhhHHHHHHhccccccCCCccc---ccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCC
Confidence                   222222222221  111111101   1123478999999988988  9999999999999863

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=2.2e-24  Score=147.89  Aligned_cols=139  Identities=24%  Similarity=0.311  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccCCCCCC------cCeeehHHHHHHHHhcC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMVMTEK------CDVYSFGVVTLEVLMGK-   69 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~~~~~~------~di~s~G~~~~~l~~g~-   69 (160)
                      +||+++.++.+||+|||+++........    .....|++.|+|||.+.+......      +|+||+|+++|+|++|. 
T Consensus       171 ~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~  250 (337)
T 3mdy_A          171 KNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCV  250 (337)
T ss_dssp             GGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccC
Confidence            5999999999999999999765433221    124568999999999987665554      89999999999999994 


Q ss_pred             ---------CccccccccCCCCCchhhHHH-hhhcCCCCCCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           70 ---------HPRDLLSSLSSSSDPKIMLID-VLDQRLPPPVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        70 ---------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                               .||.....   .......... .......+..+.  ........+.+++.+||+.||++|||++++++++.
T Consensus       251 ~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~  327 (337)
T 3mdy_A          251 SGGIVEEYQLPYHDLVP---SDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLA  327 (337)
T ss_dssp             BTTBCCCCCCTTTTTSC---SSCCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHH
T ss_pred             cccccccccccHhhhcC---CCCchhhhHHHHhhhccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHH
Confidence                     44432211   1111111111 222222222222  11123344678999999999999999999999987


Q ss_pred             hhccC
Q 040414          138 ITRKT  142 (160)
Q Consensus       138 ~~~~~  142 (160)
                      ...+.
T Consensus       328 ~l~~~  332 (337)
T 3mdy_A          328 KMSES  332 (337)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.90  E-value=1.4e-24  Score=151.69  Aligned_cols=135  Identities=17%  Similarity=0.286  Sum_probs=91.1

Q ss_pred             CceeecCCCceEEcccccceeccCCC-------CccccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-------SNRTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-------~~~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +|||++.++.+||+|||.+.......       .......+++.|+|||++.+  ..++.++|+||+||++|+|++|..|
T Consensus       157 ~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~p  236 (389)
T 3gni_B          157 SHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVP  236 (389)
T ss_dssp             GGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCC
Confidence            59999999999999999876543211       11122467888999999987  4678899999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCC-----------------------------------C------CCCHHHHHHHHH
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLP-----------------------------------P------PVDQKVIQDILL  110 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~------~~~~~~~~~~~~  110 (160)
                      |......       ...........+                                   .      +...........
T Consensus       237 f~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  309 (389)
T 3gni_B          237 FKDMPAT-------QMLLEKLNGTVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPH  309 (389)
T ss_dssp             TTTCCST-------THHHHC--------------------------------------------------------CCHH
T ss_pred             CCCCCHH-------HHHHHHhcCCCCccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHH
Confidence            9632211       011110000000                                   0      000001111234


Q ss_pred             HHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414          111 ASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       111 ~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      +.+|+.+||+.||++|||++++++|+|+....
T Consensus       310 ~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~  341 (389)
T 3gni_B          310 FHHFVEQCLQRNPDARPSASTLLNHSFFKQIK  341 (389)
T ss_dssp             HHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC-
T ss_pred             HHHHHHHHhhcCcccCCCHHHHhcCHHHHHHh
Confidence            67899999999999999999999999998643

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.90  E-value=3e-25  Score=152.02  Aligned_cols=135  Identities=18%  Similarity=0.140  Sum_probs=87.0

Q ss_pred             Cceeec-----CCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILN-----SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~-----~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++     .++.+||+|||+++.............+++.|+|||++.+.. ++.++|+||+|+++|+|++|.+||..
T Consensus       161 ~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  240 (329)
T 3gbz_A          161 QNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPG  240 (329)
T ss_dssp             GGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             HHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence            599994     455699999999986654433334456789999999987754 78899999999999999999999863


Q ss_pred             ccccCCCCCchhhHHHhhhc--C------------------CCCCCCHHHHH-----HHHHHHHHHHhhhccCCCCCCCH
Q 040414           75 LSSLSSSSDPKIMLIDVLDQ--R------------------LPPPVDQKVIQ-----DILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~~-----~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                      ...       ..........  .                  .+.-.......     ....+.+|+.+||+.||++|||+
T Consensus       241 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~  313 (329)
T 3gbz_A          241 DSE-------IDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISA  313 (329)
T ss_dssp             SSH-------HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCH
T ss_pred             CCH-------HHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCH
Confidence            221       1111111100  0                  00000000000     12345789999999999999999


Q ss_pred             HHHHHHHhhhccC
Q 040414          130 QYVSQEFLITRKT  142 (160)
Q Consensus       130 ~~~~~~~~~~~~~  142 (160)
                      +++++|+||....
T Consensus       314 ~e~l~hp~f~~~~  326 (329)
T 3gbz_A          314 KNALEHPYFSHND  326 (329)
T ss_dssp             HHHHTSGGGSSSC
T ss_pred             HHHhCCcccCCCC
Confidence            9999999998743

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.90  E-value=7.7e-25  Score=147.32  Aligned_cols=131  Identities=26%  Similarity=0.377  Sum_probs=86.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccc----ccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELA----YTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~----~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++...... ......+++.|+|||.+    ....++.++|+||+|++++++++|..||... 
T Consensus       139 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-  216 (290)
T 3fme_A          139 SNVLINALGQVKMCDFGISGYLVDDV-AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSW-  216 (290)
T ss_dssp             GGCEECTTCCEEBCCC----------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCC-
T ss_pred             HHEEECCCCCEEEeecCCcccccccc-cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCcccc-
Confidence            59999999999999999997654332 22334688899999996    4455778899999999999999999998621 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           ...............+.......   ...+.+++.+||+.||++|||++++++|+|+...
T Consensus       217 -----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~~  273 (290)
T 3fme_A          217 -----GTPFQQLKQVVEEPSPQLPADKF---SAEFVDFTSQCLKKNSKERPTYPELMQHPFFTLH  273 (290)
T ss_dssp             -----SCHHHHHHHHHHSCCCCCCTTTS---CHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             -----CchHHHHHHHhccCCCCcccccC---CHHHHHHHHHHhhcChhhCcCHHHHHhCcccccC
Confidence                 12223333333332222111111   1235789999999999999999999999999864

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.90  E-value=2.1e-24  Score=145.36  Aligned_cols=128  Identities=22%  Similarity=0.345  Sum_probs=91.0

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++ .++.+||+|||++......  ......+++.|+|||.+.+ .++.++|+||+|+++++|++|..||...    
T Consensus       160 ~Nil~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~----  232 (290)
T 1t4h_A          160 DNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----  232 (290)
T ss_dssp             GGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----
T ss_pred             HHEEEECCCCCEEEeeCCCccccccc--ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCc----
Confidence            589997 7899999999998654322  2234568899999998864 4788999999999999999999998622    


Q ss_pred             CCCCchhhHHHhhhcCC-CCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           80 SSSDPKIMLIDVLDQRL-PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                         .............. +.......   ...+.+++.+||+.||++|||++++++|+|+.+.
T Consensus       233 ---~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~~  289 (290)
T 1t4h_A          233 ---QNAAQIYRRVTSGVKPASFDKVA---IPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             ---SSHHHHHHHHTTTCCCGGGGGCC---CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             ---CcHHHHHHHHhccCCccccCCCC---CHHHHHHHHHHccCChhhCCCHHHHhhCcccccC
Confidence               12222222222221 11111111   1235789999999999999999999999999764

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.90  E-value=5.5e-25  Score=154.86  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=90.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccc----------ccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELA----------YTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~----------~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|||++.++.+||+|||+++.....   .....| +.|+|||++          ....++.++|+||+||++|+|++|..
T Consensus       240 ~NILl~~~~~~kL~DFG~a~~~~~~---~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~  315 (413)
T 3dzo_A          240 VDIVLDQRGGVFLTGFEHLVRDGAS---AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADL  315 (413)
T ss_dssp             GGEEECTTCCEEECCGGGCEETTEE---ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSC
T ss_pred             ceEEEecCCeEEEEeccceeecCCc---cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCC
Confidence            5999999999999999998865433   233456 899999998          44456778999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ||........       ........  ...+       ..+.+++.+||+.||++|||+.++++|+|+..
T Consensus       316 Pf~~~~~~~~-------~~~~~~~~--~~~~-------~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~  369 (413)
T 3dzo_A          316 PNTDDAALGG-------SEWIFRSC--KNIP-------QPVRALLEGFLRYPKEDRLLPLQAMETPEYEQ  369 (413)
T ss_dssp             CCCTTGGGSC-------SGGGGSSC--CCCC-------HHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             CCCCcchhhh-------HHHHHhhc--ccCC-------HHHHHHHHHHccCChhhCcCHHHHHhCHHHHH
Confidence            9964332111       11111111  1122       23578999999999999999999999999976

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.90  E-value=7.5e-24  Score=147.65  Aligned_cols=130  Identities=25%  Similarity=0.342  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.+|.+||+|||+++..... .......||+.|+|||++..   ..++.++|+||+|+++|+|++|..||.....
T Consensus       144 ~NIll~~~g~vkL~DFG~a~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~  222 (384)
T 4fr4_A          144 DNILLDEHGHVHITDFNIAAMLPRE-TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSS  222 (384)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTT-CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTT
T ss_pred             HHeEECCCCCEEEeccceeeeccCC-CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCC
Confidence            5999999999999999999875433 23345679999999999864   3478899999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-HHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-MQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-~~~~~~~~~~~~  140 (160)
                          .................+  ...   ...+.+++.+||+.||++||+ +++++.|+|+..
T Consensus       223 ----~~~~~~~~~~~~~~~~~p--~~~---s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~  277 (384)
T 4fr4_A          223 ----TSSKEIVHTFETTVVTYP--SAW---SQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMND  277 (384)
T ss_dssp             ----SCHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTT
T ss_pred             ----ccHHHHHHHHhhcccCCC--CcC---CHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhc
Confidence                111122222222222211  111   123478999999999999998 999999999975

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.90  E-value=2.4e-24  Score=144.14  Aligned_cols=132  Identities=18%  Similarity=0.260  Sum_probs=96.4

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||++   +.++.++|+|||.+....... ......+++.|+|||.+.+. ++.++|+||+|++++++++|..||..   
T Consensus       135 ~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~---  209 (277)
T 3f3z_A          135 ENFLFLTDSPDSPLKLIDFGLAARFKPGK-MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSA---  209 (277)
T ss_dssp             GGEEESSSSTTCCEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCC---
T ss_pred             HHEEEecCCCCCcEEEEecccceeccCcc-chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCC---
Confidence            58999   788999999999998655332 23345688999999998654 78899999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .................+. .........+.+++.+||+.||++|||+.++++|+|+....
T Consensus       210 ----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~~~  269 (277)
T 3f3z_A          210 ----PTDSEVMLKIREGTFTFPE-KDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEKQL  269 (277)
T ss_dssp             ----SSHHHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHHHH
T ss_pred             ----CCHHHHHHHHHhCCCCCCc-hhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhccc
Confidence                2222233333333222211 11111233467899999999999999999999999998744

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.90  E-value=2.3e-24  Score=149.64  Aligned_cols=135  Identities=16%  Similarity=0.197  Sum_probs=91.7

Q ss_pred             Cceeec------CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILN------SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~------~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++      ..+.+||+|||+++.....   .....+++.|+|||++.+..++.++|+||+|+++|+|++|..||..
T Consensus       161 ~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~  237 (373)
T 1q8y_A          161 ENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  237 (373)
T ss_dssp             GGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             HHeEEeccCCCcCcceEEEcccccccccCCC---CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            589994      4457999999999865432   2234688999999999988889999999999999999999999963


Q ss_pred             ccccCCCCCchhhHHHhhh--cCCC--------------------------------------CCCCHHHHHHHHHHHHH
Q 040414           75 LSSLSSSSDPKIMLIDVLD--QRLP--------------------------------------PPVDQKVIQDILLASTI  114 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~--~~~~--------------------------------------~~~~~~~~~~~~~~~~l  114 (160)
                      ....... ...........  ..++                                      ...+   ......+.+|
T Consensus       238 ~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l  313 (373)
T 1q8y_A          238 DEGHSYT-KDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFS---KDEAKEISDF  313 (373)
T ss_dssp             --------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCC---HHHHHHHHHH
T ss_pred             CcccccC-ChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCC---cchHHHHHHH
Confidence            3211100 00011111000  0000                                      0011   1223456789


Q ss_pred             HHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414          115 SFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       115 ~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      +.+||+.||++|||++++++|+|+....
T Consensus       314 i~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          314 LSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             HGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             HHHHhccCccccCCHHHHhhChhhhccc
Confidence            9999999999999999999999999744

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.90  E-value=4.7e-24  Score=152.91  Aligned_cols=132  Identities=24%  Similarity=0.251  Sum_probs=94.6

Q ss_pred             Cceeec---CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILN---SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~---~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++   .++.+||+|||+++...... ......|++.|+|||++.+ .++.++|+||+|+++|+|++|.+||..   
T Consensus       150 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~---  224 (486)
T 3mwu_A          150 ENILLESKEKDCDIKIIDFGLSTCFQQNT-KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYG---  224 (486)
T ss_dssp             GGEEESSSSTTCCEEECSCSCTTTBCCC-----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCC---
T ss_pred             HHEEEecCCCCCCEEEEECCcCeECCCCC-ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCC---
Confidence            599995   45679999999997654332 2334568999999999875 478899999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .................+.+ ........+.+|+.+||+.||.+|||++++++|+|+....
T Consensus       225 ----~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          225 ----KNEYDILKRVETGKYAFDLP-QWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             ----SSHHHHHHHHHHTCCCSCSG-GGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             ----CCHHHHHHHHHhCCCCCCCc-ccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCc
Confidence                22223333333333332221 1111223457899999999999999999999999998744

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.90  E-value=5.2e-24  Score=146.94  Aligned_cols=143  Identities=18%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----------ccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----------NRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGK   69 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----------~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~   69 (160)
                      +||+++.++.+||+|||+++.......          ......+++.|+|||++.. ..++.++|+||+|+++++|++|.
T Consensus       141 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~  220 (353)
T 2b9h_A          141 SNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRR  220 (353)
T ss_dssp             GGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHeEEcCCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCC
Confidence            599999999999999999987643211          1122467889999998764 56788899999999999999999


Q ss_pred             CccccccccC-----------------CCCCchhhHHHhhhcCCCCC-CC--HHHHHHHHHHHHHHHhhhccCCCCCCCH
Q 040414           70 HPRDLLSSLS-----------------SSSDPKIMLIDVLDQRLPPP-VD--QKVIQDILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        70 ~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                      +||.......                 ...................+ ..  .........+.+++.+||+.||++|||+
T Consensus       221 ~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~  300 (353)
T 2b9h_A          221 PIFPGRDYRHQLLLIFGIIGTPHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITA  300 (353)
T ss_dssp             CSCCCSSHHHHHHHHHHHHCCCCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             CCCCCCCcHHHHHHHHHHhCCCchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCH
Confidence            9986322100                 00000000011111000000 00  0001112345789999999999999999


Q ss_pred             HHHHHHHhhhccCc
Q 040414          130 QYVSQEFLITRKTP  143 (160)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (160)
                      +++++|+|+.....
T Consensus       301 ~ell~hp~~~~~~~  314 (353)
T 2b9h_A          301 KEALEHPYLQTYHD  314 (353)
T ss_dssp             HHHHTSGGGTTTCC
T ss_pred             HHHhcCccccccCC
Confidence            99999999987443

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.90  E-value=4.3e-24  Score=150.65  Aligned_cols=132  Identities=22%  Similarity=0.245  Sum_probs=92.0

Q ss_pred             CceeecCC-CceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN-LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~-~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.+ +.+||+|||+++.+.... ......+++.|+|||++.+. .++.++||||+||++|+|++|++||..... 
T Consensus       185 ~NILl~~~~~~~kl~DFG~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~-  262 (420)
T 1j1b_A          185 QNLLLDPDTAVLKLCDFGSAKQLVRGE-PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSG-  262 (420)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCTTC-CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             hhEEEeCCCCeEEeccchhhhhcccCC-CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCH-
Confidence            59999965 678999999998754332 22345689999999998765 578899999999999999999999963221 


Q ss_pred             CCCCCchhhHHHhh--------------hcC-----CCC--CCCHHH---HHHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           79 SSSSDPKIMLIDVL--------------DQR-----LPP--PVDQKV---IQDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        79 ~~~~~~~~~~~~~~--------------~~~-----~~~--~~~~~~---~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                            ...+...+              ...     .+.  ..+...   ......+.+|+.+||+.||++|||++++++
T Consensus       263 ------~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          263 ------VDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             ------HHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ------HHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence                  11111111              000     000  000000   001234678999999999999999999999


Q ss_pred             HHhhhc
Q 040414          135 EFLITR  140 (160)
Q Consensus       135 ~~~~~~  140 (160)
                      |+|+..
T Consensus       337 hp~f~~  342 (420)
T 1j1b_A          337 HSFFDE  342 (420)
T ss_dssp             SGGGGG
T ss_pred             CHhhcc
Confidence            999976

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.90  E-value=4.6e-25  Score=154.93  Aligned_cols=142  Identities=20%  Similarity=0.159  Sum_probs=87.7

Q ss_pred             Cceee----cCCCceEEcccccceeccCCC---CccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIIL----NSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill----~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +|||+    +.++.+||+|||+++......   .......+|+.|+|||++.+. .++.++||||+||++|+|++|.+||
T Consensus       157 ~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf  236 (405)
T 3rgf_A          157 ANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  236 (405)
T ss_dssp             GGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCC
Confidence            59999    677899999999998664322   122345689999999998874 4788999999999999999999999


Q ss_pred             ccccccC--CCCCchhhHHHhhh--cCCCCCCCH-----------------------HHHH--------HHHHHHHHHHh
Q 040414           73 DLLSSLS--SSSDPKIMLIDVLD--QRLPPPVDQ-----------------------KVIQ--------DILLASTISFA  117 (160)
Q Consensus        73 ~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~-----------------------~~~~--------~~~~~~~l~~~  117 (160)
                      .......  ........+.....  +.+......                       ....        ....+.+|+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~  316 (405)
T 3rgf_A          237 HCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQK  316 (405)
T ss_dssp             CCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHH
T ss_pred             CCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHH
Confidence            5322110  00000111111100  000000000                       0000        01235789999


Q ss_pred             hhccCCCCCCCHHHHHHHHhhhccC
Q 040414          118 CLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus       118 cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ||+.||.+|||++++++|+||....
T Consensus       317 ~L~~dP~~R~ta~e~L~hp~f~~~~  341 (405)
T 3rgf_A          317 LLTMDPIKRITSEQAMQDPYFLEDP  341 (405)
T ss_dssp             HSCSSGGGSCCHHHHHTSGGGTSSS
T ss_pred             HccCCcccCCCHHHHhcChhhccCC
Confidence            9999999999999999999998743

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.90  E-value=4.7e-24  Score=147.32  Aligned_cols=138  Identities=24%  Similarity=0.210  Sum_probs=90.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.++.....   .....+++.|+|||.+.+ ..++.++|+||+|+++++|++|..||.......
T Consensus       155 ~NIl~~~~~~~kl~Dfg~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~  231 (353)
T 3coi_A          155 GNLAVNEDCELKILDFGLARHADAE---MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD  231 (353)
T ss_dssp             GGEEECTTCCEEECSTTCTTC-----------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH
T ss_pred             HHEeECCCCcEEEeecccccCCCCC---ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            5999999999999999998764322   223467889999999876 567889999999999999999999986322100


Q ss_pred             CC-------CCc---------hh---hHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SS-------SDP---------KI---MLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~-------~~~---------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..       ..+         ..   ........................+.+++.+||+.||++|||++++++|+|+..
T Consensus       232 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~  311 (353)
T 3coi_A          232 QLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEP  311 (353)
T ss_dssp             HHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhh
Confidence            00       000         00   000000011111111101111234578999999999999999999999999986


Q ss_pred             c
Q 040414          141 K  141 (160)
Q Consensus       141 ~  141 (160)
                      .
T Consensus       312 ~  312 (353)
T 3coi_A          312 F  312 (353)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.90  E-value=2.4e-24  Score=148.53  Aligned_cols=129  Identities=22%  Similarity=0.266  Sum_probs=89.2

Q ss_pred             cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCch
Q 040414            6 NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPK   85 (160)
Q Consensus         6 ~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~   85 (160)
                      +.++.+||+|||+++.....   .....+++.|+|||++.+..++.++|+||+|+++|+|++|..||.......    ..
T Consensus       176 ~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~  248 (355)
T 2eu9_A          176 VKNTSIRVADFGSATFDHEH---HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENRE----HL  248 (355)
T ss_dssp             ESCCCEEECCCTTCEETTSC---CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH----HH
T ss_pred             cCCCcEEEeecCcccccccc---ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHH----HH
Confidence            56789999999999864332   233568999999999998888999999999999999999999986322100    00


Q ss_pred             hhHHHhhhcCCCC--------------------CCC-----------------HHHHHHHHHHHHHHHhhhccCCCCCCC
Q 040414           86 IMLIDVLDQRLPP--------------------PVD-----------------QKVIQDILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        86 ~~~~~~~~~~~~~--------------------~~~-----------------~~~~~~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      ....... ...+.                    ...                 .........+.+|+.+||+.||++|||
T Consensus       249 ~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt  327 (355)
T 2eu9_A          249 VMMEKIL-GPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT  327 (355)
T ss_dssp             HHHHHHH-CCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred             HHHHHHc-CCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC
Confidence            0000000 00000                    000                 000111234678999999999999999


Q ss_pred             HHHHHHHHhhhccC
Q 040414          129 MQYVSQEFLITRKT  142 (160)
Q Consensus       129 ~~~~~~~~~~~~~~  142 (160)
                      ++++++|+|+....
T Consensus       328 ~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          328 LAEALLHPFFAGLT  341 (355)
T ss_dssp             HHHHTTSGGGGGCC
T ss_pred             HHHHhcChhhcCCC
Confidence            99999999999754

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.90  E-value=1.9e-24  Score=147.59  Aligned_cols=134  Identities=24%  Similarity=0.252  Sum_probs=94.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.++...... ......+++.|+|||++.+..++.++|+||+|+++|++++|..||.....   
T Consensus       149 ~Nili~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---  224 (326)
T 1blx_A          149 QNILVTSSGQIKLADFGLARIYSFQM-ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD---  224 (326)
T ss_dssp             GGEEECTTCCEEECSCCSCCCCCGGG-GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---
T ss_pred             HHeEEcCCCCEEEecCcccccccCCC-CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH---
Confidence            59999999999999999987654322 22335678899999999888888999999999999999999999863221   


Q ss_pred             CCCchhhHHHhhh----------------------cCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLD----------------------QRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          .........                      .....+...........+.+|+.+||+.||++|||++++++|+|+
T Consensus       225 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~  300 (326)
T 1blx_A          225 ----VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  300 (326)
T ss_dssp             ----HHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGG
T ss_pred             ----HHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccc
Confidence                111111110                      000000000000112235789999999999999999999999999


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ....
T Consensus       301 ~~~~  304 (326)
T 1blx_A          301 QDLE  304 (326)
T ss_dssp             TTCC
T ss_pred             cccc
Confidence            8643

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.90  E-value=3.8e-24  Score=145.00  Aligned_cols=130  Identities=22%  Similarity=0.288  Sum_probs=95.1

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||++   +.++.+||+|||.++.....  ......+++.|+|||.+.+..++.++|+||+|++++++++|..||...  
T Consensus       135 ~NIl~~~~~~~~~~kl~Dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~--  210 (304)
T 2jam_A          135 ENLLYLTPEENSKIMITDFGLSKMEQNG--IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE--  210 (304)
T ss_dssp             GGCEESSSSTTCCEEBCSCSTTCCCCCB--TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS--
T ss_pred             HHEEEecCCCCCCEEEccCCcceecCCC--ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC--
Confidence            48999   77889999999998754322  223345888999999998888888999999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCC--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLP--PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           ...............  .+....   ....+.+++.+||+.||++|||++++++|+|+....
T Consensus       211 -----~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          211 -----TESKLFEKIKEGYYEFESPFWDD---ISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             -----CHHHHHHHHHHCCCCCCTTTTTT---SCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSSC
T ss_pred             -----CHHHHHHHHHcCCCCCCcccccc---CCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCCC
Confidence                 122222222222221  111111   122357899999999999999999999999998754

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.90  E-value=1.6e-23  Score=141.87  Aligned_cols=132  Identities=19%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCC--CCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVM--TEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~--~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.+.......  .......+++.|++||.+.+...  +.++|+||+|++++++++|..||... 
T Consensus       138 ~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-  216 (305)
T 2wtk_C          138 GNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD-  216 (305)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS-
T ss_pred             ccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc-
Confidence            59999999999999999998654321  12233458889999999876443  56899999999999999999998622 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                            ................+.  ...   ..+.+++.+||+.||++|||++++++|+|+......
T Consensus       217 ------~~~~~~~~i~~~~~~~~~--~~~---~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~  273 (305)
T 2wtk_C          217 ------NIYKLFENIGKGSYAIPG--DCG---PPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPP  273 (305)
T ss_dssp             ------SHHHHHHHHHHCCCCCCS--SSC---HHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC
T ss_pred             ------hHHHHHHHHhcCCCCCCC--ccC---HHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCC
Confidence                  122222222222222211  111   124679999999999999999999999999875543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.90  E-value=4.3e-25  Score=147.85  Aligned_cols=131  Identities=24%  Similarity=0.321  Sum_probs=94.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.++.............+++.|+|||.+.+..++.++|+||+|+++|++++|..||....    
T Consensus       145 ~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~----  220 (279)
T 2w5a_A          145 ANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS----  220 (279)
T ss_dssp             GGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS----
T ss_pred             hhEEEcCCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC----
Confidence            5999999999999999998765433222233467889999999988888889999999999999999999986321    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ............. ...+....   ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       221 ---~~~~~~~i~~~~~-~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          221 ---QKELAGKIREGKF-RRIPYRYS---DELNEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             ---HHHHHHHHHHTCC-CCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             ---HHHHHHHHhhccc-ccCCcccC---HHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence               1222222222221 12221111   2347899999999999999999999999988643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.90  E-value=1.5e-24  Score=146.32  Aligned_cols=136  Identities=17%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +||++   +.++.+||+|||+++.......       ......+++.|+|||.+.+..++.++|+||+|+++|++++|..
T Consensus       134 ~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  213 (296)
T 3uzp_A          134 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL  213 (296)
T ss_dssp             GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCC
Confidence            58999   4788999999999987654322       1234568899999999998888899999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ||.........    .............+...........+.+++.+||+.||++|||++++++.+....
T Consensus       214 pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~  279 (296)
T 3uzp_A          214 PWQGLKAATKR----QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF  279 (296)
T ss_dssp             TTSSCCCSSSS----SHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCcCchhhh----hhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHH
Confidence            99743321111    1111111111111100000001123578999999999999999999999877654

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.90  E-value=5.9e-24  Score=142.10  Aligned_cols=133  Identities=23%  Similarity=0.283  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.+.......  .......+++.|+|||.+.+..+ +.++|+||+|++++++++|..||.....
T Consensus       134 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  213 (276)
T 2yex_A          134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  213 (276)
T ss_dssp             GGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCT
T ss_pred             HHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCch
Confidence            59999999999999999987654221  12234568889999999987665 6689999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ...............+....   ....+.+++.+||+.||++|||++++++|+|+....
T Consensus       214 ------~~~~~~~~~~~~~~~~~~~~---~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (276)
T 2yex_A          214 ------SCQEYSDWKEKKTYLNPWKK---IDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (276)
T ss_dssp             ------TSHHHHHHHTTCTTSTTGGG---SCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             ------HHHHHHHhhhcccccCchhh---cCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChh
Confidence                  11111222111111111111   122357899999999999999999999999998643

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.90  E-value=4.4e-24  Score=153.35  Aligned_cols=131  Identities=24%  Similarity=0.258  Sum_probs=94.8

Q ss_pred             CceeecCC---CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSN---LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~---~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++..   +.+||+|||+++...... ......||+.|+|||++. ..++.++|+||+|+++|+|++|.+||..   
T Consensus       165 ~Nil~~~~~~~~~~kl~DfG~a~~~~~~~-~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~---  239 (494)
T 3lij_A          165 ENLLLESKEKDALIKIVDFGLSAVFENQK-KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGG---  239 (494)
T ss_dssp             GGEEESCSSTTCCEEECCCTTCEECBTTB-CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCC---
T ss_pred             hhEEEeCCCCCCcEEEEECCCCeECCCCc-cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCC---
Confidence            59999764   459999999998765432 233456899999999986 4578899999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          .................+. .........+.+|+.+||+.||.+|||++++++|+|+...
T Consensus       240 ----~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          240 ----QTDQEILRKVEKGKYTFDS-PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             ----SSHHHHHHHHHHTCCCCCS-GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             ----CCHHHHHHHHHhCCCCCCc-hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccC
Confidence                2223333333333332221 1111122335789999999999999999999999999863

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.90  E-value=6.8e-24  Score=145.36  Aligned_cols=126  Identities=22%  Similarity=0.252  Sum_probs=86.8

Q ss_pred             CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCchhh
Q 040414            8 NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIM   87 (160)
Q Consensus         8 ~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~~~   87 (160)
                      ++.+||+|||.++.....   .....+++.|+|||++.+..++.++|+||+|+++|++++|..||.......    ....
T Consensus       173 ~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~----~~~~  245 (339)
T 1z57_A          173 NPDIKVVDFGSATYDDEH---HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKE----HLAM  245 (339)
T ss_dssp             CCCEEECCCSSCEETTSC---CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHH----HHHH
T ss_pred             CCCceEeeCcccccCccc---cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHH----HHHH
Confidence            667999999999864332   233568899999999998888999999999999999999999986322100    0000


Q ss_pred             HHHhhhcCCCC-------------------------------------CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           88 LIDVLDQRLPP-------------------------------------PVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        88 ~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      ..... ...+.                                     ............+.+|+.+||+.||.+|||++
T Consensus       246 ~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~  324 (339)
T 1z57_A          246 MERIL-GPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLR  324 (339)
T ss_dssp             HHHHH-CSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHH
T ss_pred             HHHHh-CCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHH
Confidence            00000 00000                                     00000011233467899999999999999999


Q ss_pred             HHHHHHhhhcc
Q 040414          131 YVSQEFLITRK  141 (160)
Q Consensus       131 ~~~~~~~~~~~  141 (160)
                      ++++|+|+...
T Consensus       325 ell~hp~f~~~  335 (339)
T 1z57_A          325 EALKHPFFDLL  335 (339)
T ss_dssp             HHTTSGGGGGG
T ss_pred             HHhcCHHHHHH
Confidence            99999999864

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.90  E-value=3.2e-24  Score=151.82  Aligned_cols=131  Identities=25%  Similarity=0.326  Sum_probs=87.2

Q ss_pred             CceeecCC-------------CceEEcccccceeccCCCCc----cccccccccccCCccccc-------CCCCCCcCee
Q 040414            1 NNIILNSN-------------LEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYT-------MVMTEKCDVY   56 (160)
Q Consensus         1 ~nill~~~-------------~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~-------~~~~~~~di~   56 (160)
                      +|||++.+             +.+||+|||+++........    .....||+.|+|||++.+       ..++.++|||
T Consensus       144 ~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~Diw  223 (434)
T 2rio_A          144 QNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIF  223 (434)
T ss_dssp             GGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHH
T ss_pred             HhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhH
Confidence            58999754             48999999999876543221    123568999999999865       4577889999


Q ss_pred             ehHHHHHHHHh-cCCccccccccCCCCCchhhHHHhhhcCCCCCC--CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHH
Q 040414           57 SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPV--DQKVIQDILLASTISFACLQSNPKSRPTMQYVS  133 (160)
Q Consensus        57 s~G~~~~~l~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~  133 (160)
                      |+||++|+|++ |..||....       ...  ..........+.  ..........+.+++.+||+.||.+|||+++++
T Consensus       224 SlG~il~ellt~g~~Pf~~~~-------~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil  294 (434)
T 2rio_A          224 SMGCVFYYILSKGKHPFGDKY-------SRE--SNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVL  294 (434)
T ss_dssp             HHHHHHHHHHTTSCCTTCSTT-------THH--HHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             hHHHHHHHHHhCCCCCCCCch-------hhH--HHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHH
Confidence            99999999998 899985211       111  111111111110  001112233468899999999999999999999


Q ss_pred             HHHhhhc
Q 040414          134 QEFLITR  140 (160)
Q Consensus       134 ~~~~~~~  140 (160)
                      +|+|+..
T Consensus       295 ~hp~f~~  301 (434)
T 2rio_A          295 RHPLFWP  301 (434)
T ss_dssp             TSGGGSC
T ss_pred             hCCccCC
Confidence            9999954

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.90  E-value=1.6e-24  Score=157.08  Aligned_cols=131  Identities=20%  Similarity=0.272  Sum_probs=96.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++...... ......||+.|+|||++.+..++.++|+||+|+++|+|++|.+||......  
T Consensus       315 eNILld~~g~vKL~DFGla~~~~~~~-~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~--  391 (576)
T 2acx_A          315 ENILLDDHGHIRISDLGLAVHVPEGQ-TIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK--  391 (576)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCTTC-CEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC--
T ss_pred             heEEEeCCCCeEEEecccceecccCc-cccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc--
Confidence            59999999999999999998764332 233457899999999999888899999999999999999999999632211  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                        .....+...+... +...+...   ...+.+|+.+||+.||.+||     +++++++|+||..
T Consensus       392 --~~~~~i~~~i~~~-~~~~p~~~---s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~  450 (576)
T 2acx_A          392 --IKREEVERLVKEV-PEEYSERF---SPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKK  450 (576)
T ss_dssp             --CCHHHHHHHHHHC-CCCCCTTS---CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTT
T ss_pred             --hhHHHHHHHhhcc-cccCCccC---CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhcc
Confidence              1112222222111 11111111   12357899999999999999     8999999999986

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.89  E-value=1.3e-24  Score=155.72  Aligned_cols=132  Identities=24%  Similarity=0.253  Sum_probs=97.0

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||+   +.++.+||+|||+++...... ......||+.|+|||++.+ .++.++|+||+|+++|+|++|.+||..   
T Consensus       155 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~---  229 (484)
T 3nyv_A          155 ENLLLESKSKDANIRIIDFGLSTHFEASK-KMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNG---  229 (484)
T ss_dssp             GGEEESSSSTTCCEEECCTTHHHHBCCCC-SHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCC---
T ss_pred             HHEEEecCCCCCcEEEEeeeeeEEccccc-ccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCC---
Confidence            59999   467899999999998654432 2334568999999999876 578899999999999999999999962   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .................+.+ ........+.+|+.+||+.||.+|||++++++|+|+....
T Consensus       230 ----~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~~  289 (484)
T 3nyv_A          230 ----ANEYDILKKVEKGKYTFELP-QWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYT  289 (484)
T ss_dssp             ----SSHHHHHHHHHHCCCCCCSG-GGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHHT
T ss_pred             ----CCHHHHHHHHHcCCCCCCCc-ccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhcccc
Confidence                22233333333333332221 1111223457899999999999999999999999998743

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.89  E-value=1.5e-24  Score=148.36  Aligned_cols=141  Identities=15%  Similarity=0.125  Sum_probs=92.3

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++ .+||+|||+++...... ......++..|+|||.+.+ ..++.++|+||+|+++++|++|..||......
T Consensus       159 ~Nil~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~  237 (330)
T 3nsz_A          159 HNVMIDHEHRKLRLIDWGLAEFYHPGQ-EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN  237 (330)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCTTC-CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred             HHEEEcCCCCEEEEEeCCCceEcCCCC-ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCch
Confidence            599999776 89999999998654332 2334568889999999876 55788999999999999999999998421100


Q ss_pred             CCC------CCchhhHHHhhhc-CCCCCC-------------------CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           79 SSS------SDPKIMLIDVLDQ-RLPPPV-------------------DQKVIQDILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        79 ~~~------~~~~~~~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                      ...      ..........+.. ......                   ..........+.+|+.+||+.||++|||++++
T Consensus       238 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~  317 (330)
T 3nsz_A          238 YDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREA  317 (330)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHH
T ss_pred             HHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHH
Confidence            000      0000000000000 000000                   00000012345789999999999999999999


Q ss_pred             HHHHhhhccC
Q 040414          133 SQEFLITRKT  142 (160)
Q Consensus       133 ~~~~~~~~~~  142 (160)
                      ++|+|+....
T Consensus       318 l~hp~f~~~~  327 (330)
T 3nsz_A          318 MEHPYFYTVV  327 (330)
T ss_dssp             HTSGGGTTCC
T ss_pred             hcCccHhhhc
Confidence            9999998754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.89  E-value=4.7e-24  Score=145.70  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=95.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccC-----CCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTM-----VMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~-----~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||++.+.     .++.++||||+|+++|+|++|..||.
T Consensus       160 ~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~  239 (322)
T 3soc_A          160 KNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAAD  239 (322)
T ss_dssp             GGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSS
T ss_pred             HhEEECCCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCC
Confidence            5999999999999999999876543322  2235689999999998763     34567899999999999999999986


Q ss_pred             cccccCCC---------CCchhhHHHhhhcCCCCCCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           74 LLSSLSSS---------SDPKIMLIDVLDQRLPPPVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        74 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ........         ................+....  ........+.+++.+||+.||++|||++++++.+....
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~  317 (322)
T 3soc_A          240 GPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ  317 (322)
T ss_dssp             SCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCcchhccchhhhhccCCchhhhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            43221110         011111112222222222221  11122334688999999999999999999999887654

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.89  E-value=7.9e-24  Score=147.10  Aligned_cols=128  Identities=23%  Similarity=0.330  Sum_probs=93.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......+++.|+|||++.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~-  310 (370)
T 2psq_A          232 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-  310 (370)
T ss_dssp             GGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             hhEEECCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC-
Confidence            599999999999999999986654322  1223446778999999988888999999999999999998 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            ... ....+........+.....   .+.+++.+||+.||++|||++++++++...
T Consensus       311 ------~~~-~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dP~~Rpt~~ell~~L~~i  362 (370)
T 2psq_A          311 ------VEE-LFKLLKEGHRMDKPANCTN---ELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  362 (370)
T ss_dssp             ------GGG-HHHHHHTTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------HHH-HHHHHhcCCCCCCCCCCCH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                  112 2222222222222222222   247799999999999999999999988654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.89  E-value=1.7e-24  Score=146.03  Aligned_cols=136  Identities=17%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +||++   +.++.+||+|||+++.......       ......+++.|+|||.+.+..++.++|+||+|+++|++++|..
T Consensus       134 ~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  213 (296)
T 4hgt_A          134 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL  213 (296)
T ss_dssp             GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCC
Confidence            59999   7889999999999987654322       1224568899999999998888899999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ||.........    .............+...........+.+++..||+.||++|||++++++.+...-
T Consensus       214 pf~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~  279 (296)
T 4hgt_A          214 PWQGLKAATKR----QKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLF  279 (296)
T ss_dssp             TTSSCCCSSSS----SHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHH
T ss_pred             CCcccchhhhh----hhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence            99743322111    1111111111111100000001223578999999999999999999998876554

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.89  E-value=1.6e-23  Score=142.77  Aligned_cols=135  Identities=19%  Similarity=0.189  Sum_probs=94.6

Q ss_pred             Cceee----cCCCceEEcccccceeccCCCCccccccccccccCCcccc--------cCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIIL----NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY--------TMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill----~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~--------~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||++    +.++.+||+|||+++...... ......+++.|+|||++.        +..++.++|+||+|+++|+|++|
T Consensus       141 ~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g  219 (319)
T 4euu_A          141 GNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATG  219 (319)
T ss_dssp             GGEEEEECTTSCEEEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHS
T ss_pred             HHEEEeccCCCCceEEEccCCCceecCCCC-ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhC
Confidence            58998    788889999999998765433 223456899999999886        45678899999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCC---------------------CCCCCHHHHHHHHHHHHHHHhhhccCCCCCC
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRL---------------------PPPVDQKVIQDILLASTISFACLQSNPKSRP  127 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp  127 (160)
                      ..||......   ..............+                     +.. ..........+.+++.+||+.||++||
T Consensus       220 ~~pf~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~~~L~~dP~~R~  295 (319)
T 4euu_A          220 SLPFRPFEGP---RRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVS-CSLSRGLQVLLTPVLANILEADQEKCW  295 (319)
T ss_dssp             SCSEECTTCG---GGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTT-CSSCHHHHHHHHHHHHHHSCCCTTTSC
T ss_pred             CCCCCCCCcc---chhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcc-cccchhHHHHhHHHHHHhccCChhhhc
Confidence            9999632211   111222222222211                     111 111122333467899999999999999


Q ss_pred             CHHHHHHHHhhhc
Q 040414          128 TMQYVSQEFLITR  140 (160)
Q Consensus       128 s~~~~~~~~~~~~  140 (160)
                      |++++++|+--..
T Consensus       296 s~~ell~h~~d~~  308 (319)
T 4euu_A          296 GFDQFFAETSDIL  308 (319)
T ss_dssp             CHHHHHHHHHHHT
T ss_pred             cHHHhhhccHHHh
Confidence            9999999987554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.89  E-value=1.9e-24  Score=145.95  Aligned_cols=136  Identities=15%  Similarity=0.194  Sum_probs=93.6

Q ss_pred             CceeecCCCc-----eEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLE-----AFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~-----~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||+++.++.     +||+|||+++.......       ......+++.|+|||.+.+..++.++|+||+|+++|+|++|
T Consensus       135 ~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g  214 (298)
T 1csn_A          135 DNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG  214 (298)
T ss_dssp             GGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcC
Confidence            5999987776     99999999987654322       12345688999999999888888999999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..||.....    .................+...........+.+++.+||+.||++|||++++++.+....
T Consensus       215 ~~pf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~  282 (298)
T 1csn_A          215 SLPWQGLKA----ATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVL  282 (298)
T ss_dssp             SCTTSSCCS----CCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHH
T ss_pred             CCCcchhhc----cccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHH
Confidence            999974321    11111111111111111100000011224578999999999999999999999877654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.89  E-value=1.7e-24  Score=149.85  Aligned_cols=138  Identities=24%  Similarity=0.346  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS-   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~-   79 (160)
                      +||+++.++.+||+|||++......  ......+++.|+|||++.+..++.++|+||+|+++|+|++|..||....... 
T Consensus       161 ~Nil~~~~~~~kl~Dfg~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~  238 (360)
T 3eqc_A          161 SNILVNSRGEIKLCDFGVSGQLIDS--MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL  238 (360)
T ss_dssp             GGEEECTTCCEEECCCCCCHHHHHH--C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHH
T ss_pred             HHEEECCCCCEEEEECCCCcccccc--cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence            5999999999999999998754322  1223568899999999998888899999999999999999999985321100 


Q ss_pred             ------------------------------CC---CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 040414           80 ------------------------------SS---SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR  126 (160)
Q Consensus        80 ------------------------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  126 (160)
                                                    ..   ..........+............  ....+.+|+.+||+.||++|
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~L~~dP~~R  316 (360)
T 3eqc_A          239 ELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGV--FSLEFQDFVNKCLIKNPAER  316 (360)
T ss_dssp             HHHHC------------------------------CCCHHHHHHHHHHSCCCCCCTTT--SCHHHHHHHHHHHCSSTTTS
T ss_pred             HHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCccc--ccHHHHHHHHHHhhcChhhC
Confidence                                          00   00000001111111111111100  11235789999999999999


Q ss_pred             CCHHHHHHHHhhhccC
Q 040414          127 PTMQYVSQEFLITRKT  142 (160)
Q Consensus       127 ps~~~~~~~~~~~~~~  142 (160)
                      ||++++++|+|+....
T Consensus       317 pt~~ell~hp~~~~~~  332 (360)
T 3eqc_A          317 ADLKQLMVHAFIKRSD  332 (360)
T ss_dssp             CCHHHHHTSHHHHHHH
T ss_pred             CCHHHHhhChHhhcch
Confidence            9999999999998743

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.89  E-value=2.3e-24  Score=146.68  Aligned_cols=141  Identities=18%  Similarity=0.237  Sum_probs=89.0

Q ss_pred             CceeecCCCc---eEEcccccceeccCCCC-------ccccccccccccCCccccc-----CCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLE---AFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYT-----MVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~---~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~-----~~~~~~~di~s~G~~~~~l   65 (160)
                      +||+++.++.   +||+|||+++.......       ......+++.|+|||++..     ..++.++|+||+|+++|+|
T Consensus       140 ~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l  219 (316)
T 2ac3_A          140 ENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYIL  219 (316)
T ss_dssp             GGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHH
Confidence            5999988776   99999999875532111       1123458899999999875     4467899999999999999


Q ss_pred             HhcCCccccccccCCCCC--------chhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           66 LMGKHPRDLLSSLSSSSD--------PKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ++|..||...........        ...............+. .........+.+|+.+||+.||++|||++++++|+|
T Consensus       220 ~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~  298 (316)
T 2ac3_A          220 LSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPD-KDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPW  298 (316)
T ss_dssp             HHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTT
T ss_pred             HHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCc-hhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChh
Confidence            999999964322110000        01111222222222110 111112234678999999999999999999999999


Q ss_pred             hhccC
Q 040414          138 ITRKT  142 (160)
Q Consensus       138 ~~~~~  142 (160)
                      +....
T Consensus       299 ~~~~~  303 (316)
T 2ac3_A          299 VQGCA  303 (316)
T ss_dssp             CC---
T ss_pred             hcCCC
Confidence            98743

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.89  E-value=1.6e-23  Score=142.89  Aligned_cols=138  Identities=27%  Similarity=0.369  Sum_probs=96.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|+++|++++|..||......
T Consensus       168 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~  247 (321)
T 2qkw_B          168 INILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPR  247 (321)
T ss_dssp             TTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSS
T ss_pred             HHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcH
Confidence            599999999999999999986443221  122345788999999998888899999999999999999999998643321


Q ss_pred             CCCCCchhhHHH--------hhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLID--------VLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ............        ............   .....+.+++.+||+.||++|||++++++++...-+
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          248 EMVNLAEWAVESHNNGQLEQIVDPNLADKIRP---ESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             SCCCHHHHTHHHHTTTCCCSSSSSSCTTCSCH---HHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccHHHhcChhhccccCH---HHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            111000000000        111112222222   233456789999999999999999999999986643

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.89  E-value=1.7e-23  Score=139.93  Aligned_cols=130  Identities=22%  Similarity=0.351  Sum_probs=87.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.+....... ......+++.|+|||.+.+... +.++|+||+|++++++++|..||...    
T Consensus       140 ~Nil~~~~~~~~l~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~----  214 (276)
T 2h6d_A          140 ENVLLDAHMNAKIADFGLSNMMSDGE-FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE----  214 (276)
T ss_dssp             GGEEECTTSCEEECCCCGGGCCCC--------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS----
T ss_pred             hhEEECCCCCEEEeecccccccCCCc-ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC----
Confidence            59999999999999999987654322 2233457889999999987655 57899999999999999999998622    


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                         ................+  ...   ...+.+++.+||+.||++|||++++++|+|+....+
T Consensus       215 ---~~~~~~~~~~~~~~~~~--~~~---~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~~~  270 (276)
T 2h6d_A          215 ---HVPTLFKKIRGGVFYIP--EYL---NRSVATLLMHMLQVDPLKRATIKDIREHEWFKQDLP  270 (276)
T ss_dssp             ---SHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTTCC
T ss_pred             ---cHHHHHHHhhcCcccCc--hhc---CHHHHHHHHHHccCChhhCCCHHHHHhChhhccCch
Confidence               11222222222222111  111   122467999999999999999999999999987543

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.89  E-value=2.6e-24  Score=148.77  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||++.+..++.++||||+|+++|+|++ |..||.... 
T Consensus       222 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-  300 (359)
T 3vhe_A          222 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-  300 (359)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-
T ss_pred             hhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc-
Confidence            599999999999999999986543322  2223457888999999988888999999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            ........+........+....   ..+.+++.+||+.||++|||++++++|+...
T Consensus       301 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~ell~~L~~~  353 (359)
T 3vhe_A          301 ------IDEEFCRRLKEGTRMRAPDYTT---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNL  353 (359)
T ss_dssp             ------CSHHHHHHHHHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence                  1222222222222222221111   1247789999999999999999999998654

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.89  E-value=1e-24  Score=147.51  Aligned_cols=132  Identities=21%  Similarity=0.327  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||++..............+++.|+|||.+.     ...++.++|+||+|+++++|++|..||...
T Consensus       146 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  225 (302)
T 2j7t_A          146 GNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  225 (302)
T ss_dssp             GGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             HHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC
Confidence            599999999999999998754322211222346888999999883     455778899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCC-CHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPV-DQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .       .............+... ....   ...+.+++.+||+.||++|||++++++|+|+....
T Consensus       226 ~-------~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  283 (302)
T 2j7t_A          226 N-------PMRVLLKIAKSDPPTLLTPSKW---SVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSIT  283 (302)
T ss_dssp             C-------HHHHHHHHHHSCCCCCSSGGGS---CHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTCC
T ss_pred             C-------HHHHHHHHhccCCcccCCcccc---CHHHHHHHHHHcccChhhCCCHHHHhcChHHhhhc
Confidence            2       22222222222222111 1111   12357899999999999999999999999998744

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.89  E-value=4.7e-24  Score=143.40  Aligned_cols=129  Identities=27%  Similarity=0.298  Sum_probs=86.5

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||++   +.++.+||+|||+++...... ......+++.|+|||.+. ..++.++|+||+|+++++|++|..||.... 
T Consensus       153 ~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~-  229 (285)
T 3is5_A          153 ENILFQDTSPHSPIKIIDFGLAELFKSDE-HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS-  229 (285)
T ss_dssp             GGEEESSSSTTCCEEECCCCCCCC-----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS-
T ss_pred             HHEEEecCCCCCCEEEEeeecceecCCcc-cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC-
Confidence            58999   456789999999997654332 223456888999999876 457788999999999999999999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ..................  .......+.+++.+||+.||++|||++++++|+|+++
T Consensus       230 ------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          230 ------LEEVQQKATYKEPNYAVE--CRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             ------HHHHHHHHHHCCCCCCC----CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             ------HHHHHhhhccCCcccccc--cCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence                  112222221111111110  0001123468999999999999999999999999975

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=3.3e-24  Score=149.60  Aligned_cols=132  Identities=22%  Similarity=0.230  Sum_probs=92.1

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++ .++.+||+|||+++...... ......+++.|+|||.+.+.. ++.++|+||+|+++|+|++|.+||..... 
T Consensus       170 ~Nil~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~-  247 (383)
T 3eb0_A          170 QNLLVNSKDNTLKLCDFGSAKKLIPSE-PSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETS-  247 (383)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCTTS-CCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             HHEEEcCCCCcEEEEECCCCcccCCCC-CCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCCh-
Confidence            599997 68899999999998664432 233456788999999987654 78899999999999999999999963221 


Q ss_pred             CCCCCchhhHHHhhh--------------c-----CCCCCCCHHHH-----HHHHHHHHHHHhhhccCCCCCCCHHHHHH
Q 040414           79 SSSSDPKIMLIDVLD--------------Q-----RLPPPVDQKVI-----QDILLASTISFACLQSNPKSRPTMQYVSQ  134 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~--------------~-----~~~~~~~~~~~-----~~~~~~~~l~~~cl~~dp~~Rps~~~~~~  134 (160)
                            .......+.              .     ..+........     .....+.+|+.+||+.||++|||++++++
T Consensus       248 ------~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          248 ------IDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             ------HHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ------HHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence                  111111110              0     00000000000     01123578999999999999999999999


Q ss_pred             HHhhhc
Q 040414          135 EFLITR  140 (160)
Q Consensus       135 ~~~~~~  140 (160)
                      |+|+..
T Consensus       322 hp~f~~  327 (383)
T 3eb0_A          322 HPFFDH  327 (383)
T ss_dssp             SGGGHH
T ss_pred             CHHHHH
Confidence            999975

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.89  E-value=5.3e-25  Score=150.55  Aligned_cols=131  Identities=23%  Similarity=0.295  Sum_probs=74.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccc----ccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELA----YTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~----~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||+++...... ......+++.|+|||.+    .+..++.++|+||+|+++|+|++|..||....
T Consensus       155 ~NIll~~~~~~kl~Dfg~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  233 (327)
T 3aln_A          155 SNILLDRSGNIKLCDFGISGQLVDSI-AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWN  233 (327)
T ss_dssp             GGEEEETTTEEEECCCSSSCC-------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-
T ss_pred             HHEEEcCCCCEEEccCCCceeccccc-ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcc
Confidence            59999999999999999997654332 22234588899999998    44557889999999999999999999986322


Q ss_pred             ccCCCCCchhhHHHhhhcC---CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQR---LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ...      ..........   .+.......   ...+.+++.+||+.||++|||++++++|+|+...
T Consensus       234 ~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~  292 (327)
T 3aln_A          234 SVF------DQLTQVVKGDPPQLSNSEEREF---SPSFINFVNLCLTKDESKRPKYKELLKHPFILMY  292 (327)
T ss_dssp             ------------CCCCCSCCCCCCCCSSCCC---CHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             hHH------HHHHHHhcCCCCCCCCcccccC---CHHHHHHHHHHhhCChhhCcCHHHHHhChHHHHh
Confidence            110      0011111111   111000011   1235789999999999999999999999999863

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.89  E-value=8.2e-24  Score=152.26  Aligned_cols=132  Identities=23%  Similarity=0.234  Sum_probs=96.9

Q ss_pred             CceeecCCC---ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++   .+||+|||+++...... ......|++.|+|||++.+ .++.++|+||+|+++|+|++|.+||..   
T Consensus       175 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~---  249 (504)
T 3q5i_A          175 ENILLENKNSLLNIKIVDFGLSSFFSKDY-KLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGG---  249 (504)
T ss_dssp             GGEEESSTTCCSSEEECCCTTCEECCTTS-CBCCCCSCTTTCCHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCC---
T ss_pred             HHEEEecCCCCccEEEEECCCCEEcCCCC-ccccccCCcCCCCHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCC---
Confidence            599998765   69999999998765432 2334568999999999874 578899999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .................+. .........+.+|+.+||+.||.+|||++++++|+|+....
T Consensus       250 ----~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          250 ----QNDQDIIKKVEKGKYYFDF-NDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             ----SSHHHHHHHHHHCCCCCCH-HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             ----CCHHHHHHHHHcCCCCCCc-cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhch
Confidence                2223333333333332221 11111233468899999999999999999999999998744

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.89  E-value=6e-24  Score=142.55  Aligned_cols=132  Identities=23%  Similarity=0.239  Sum_probs=92.6

Q ss_pred             CceeecCCC----ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNL----EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++    .+||+|||.+....... ......+++.|+|||.+.+..++.++|+||+|++++++++|..||... 
T Consensus       137 ~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~-  214 (283)
T 3bhy_A          137 ENIMLLDKNVPNPRIKLIDFGIAHKIEAGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGE-  214 (283)
T ss_dssp             GGEEESCSSSSSCCEEECCCTTCEECC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS-
T ss_pred             HHEEEecCCCCCCceEEEecccceeccCCC-cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCc-
Confidence            589998777    79999999998654332 223345888999999998888889999999999999999999998622 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ................+ ..........+.+++.+||+.||++|||++++++|+|+...
T Consensus       215 ------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  272 (283)
T 3bhy_A          215 ------TKQETLTNISAVNYDFD-EEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAI  272 (283)
T ss_dssp             ------SHHHHHHHHHTTCCCCC-HHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHH
T ss_pred             ------chHHHHHHhHhcccCCc-chhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHH
Confidence                  11222222221211111 11111122345789999999999999999999999999863

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.89  E-value=5.1e-24  Score=146.73  Aligned_cols=134  Identities=19%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCC-CcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTE-KCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~-~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+......  ......++..|+|||.+.+. .++. ++|+||+|++++++++|..||..... 
T Consensus       181 ~Nil~~~~~~~kl~dfg~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-  257 (348)
T 2pml_X          181 SNILMDKNGRVKLSDFGESEYMVDK--KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-  257 (348)
T ss_dssp             GGEEECTTSCEEECCCTTCEECBTT--EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-
T ss_pred             HhEEEcCCCcEEEeccccccccccc--cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-
Confidence            5999999999999999999865433  23345688899999999877 5555 89999999999999999999863221 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCC--------------HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVD--------------QKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           ...............+..              .........+.+++.+||+.||++|||++++++|+|+....
T Consensus       258 -----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~  330 (348)
T 2pml_X          258 -----LVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTN  330 (348)
T ss_dssp             -----SHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             -----HHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCC
Confidence                 012222222222211100              00011122457899999999999999999999999998754

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.89  E-value=6.7e-24  Score=144.30  Aligned_cols=134  Identities=20%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCccccc-----------CCCCCCcCeeehHHHHHHHHh
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYT-----------MVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~-----------~~~~~~~di~s~G~~~~~l~~   67 (160)
                      +||+++. +.+||+|||+++.......  ......+++.|+|||.+.+           ..++.++|+||+|+++++|++
T Consensus       156 ~NIl~~~-~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~  234 (313)
T 3cek_A          156 ANFLIVD-GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTY  234 (313)
T ss_dssp             GGEEEET-TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEC-CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHh
Confidence            5899974 8899999999986543322  1223468899999999865           356778999999999999999


Q ss_pred             cCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           68 GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                      |..||....      ..................+....   ..+.+++.+||+.||++|||++++++|+|+......
T Consensus       235 g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~~~  302 (313)
T 3cek_A          235 GKTPFQQII------NQISKLHAIIDPNHEIEFPDIPE---KDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQTHP  302 (313)
T ss_dssp             SSCTTTTCC------SHHHHHHHHHCTTSCCCCCCCSC---HHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC---
T ss_pred             CCCchhhHH------HHHHHHHHHHhcccccCCcccch---HHHHHHHHHHccCCcccCcCHHHHhcCccccCCCCc
Confidence            999986221      11122223333222222221111   234789999999999999999999999999875533

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.89  E-value=2.4e-24  Score=149.12  Aligned_cols=133  Identities=24%  Similarity=0.193  Sum_probs=85.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++...... ......+++.|+|||.+.+ ..++.++|+||+|+++|++++|..||.....  
T Consensus       163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--  239 (362)
T 3pg1_A          163 GNILLADNNDITICDFNLAREDTADA-NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTF--  239 (362)
T ss_dssp             GGEEECTTCCEEECCTTC----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             HHEEEcCCCCEEEEecCccccccccc-ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCH--
Confidence            59999999999999999997543322 2233567889999998876 5578889999999999999999999863221  


Q ss_pred             CCCCchhhHHHhh-----------------------hcCCCC--CCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHH
Q 040414           80 SSSDPKIMLIDVL-----------------------DQRLPP--PVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYV  132 (160)
Q Consensus        80 ~~~~~~~~~~~~~-----------------------~~~~~~--~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~  132 (160)
                           ........                       ......  ....  ........+.+|+.+||+.||++|||++++
T Consensus       240 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~el  314 (362)
T 3pg1_A          240 -----YNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQA  314 (362)
T ss_dssp             -----HHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred             -----HHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHH
Confidence                 11111110                       000000  0000  000112335789999999999999999999


Q ss_pred             HHHHhhhcc
Q 040414          133 SQEFLITRK  141 (160)
Q Consensus       133 ~~~~~~~~~  141 (160)
                      ++|+|+...
T Consensus       315 l~hp~f~~~  323 (362)
T 3pg1_A          315 LRHPYFESL  323 (362)
T ss_dssp             HTSGGGTTT
T ss_pred             HcCchhhhc
Confidence            999999874

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.89  E-value=3e-24  Score=146.58  Aligned_cols=132  Identities=23%  Similarity=0.256  Sum_probs=91.3

Q ss_pred             CceeecCCCc---eEEcccccceeccCCCCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLE---AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~---~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.   +||+|||+++..... .......+++.|+|||++.   ...++.++|+||+|+++|++++|..||..
T Consensus       143 ~NIl~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  221 (322)
T 2ycf_A          143 ENVLLSSQEEDCLIKITDFGHSKILGET-SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSE  221 (322)
T ss_dssp             GGEEESSSSSSCCEEECCCTTCEECCCC-HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             HHEEEecCCCCCeEEEccCccceecccc-cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            5899987654   999999999865432 1223345888999999874   34567889999999999999999999863


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ....      ............. ..+.........+.+++.+||+.||++|||++++++|+|+..
T Consensus       222 ~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~  280 (322)
T 2ycf_A          222 HRTQ------VSLKDQITSGKYN-FIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  280 (322)
T ss_dssp             TTCS------SCHHHHHHHTCCC-CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCC
T ss_pred             cchH------HHHHHHHHhCccc-cCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCC
Confidence            2211      0111111111111 111111112334678999999999999999999999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=6.7e-24  Score=145.98  Aligned_cols=132  Identities=19%  Similarity=0.273  Sum_probs=95.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||++.........  .....+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       201 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  279 (344)
T 1rjb_A          201 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP-  279 (344)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-
T ss_pred             hhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC-
Confidence            5999999999999999999865433221  223446778999999988888899999999999999998 999986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            ........+......+.+....   ..+.+++.+||+.||.+|||++++++++...-..
T Consensus       280 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  335 (344)
T 1rjb_A          280 ------VDANFYKLIQNGFKMDQPFYAT---EEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLAD  335 (344)
T ss_dssp             ------CSHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred             ------cHHHHHHHHhcCCCCCCCCCCC---HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHH
Confidence                  2222333333333222222222   2357899999999999999999999999876543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.89  E-value=4.1e-24  Score=146.81  Aligned_cols=136  Identities=22%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.   ++.+||+|||+++......  .....+++.|+|||++.+..++.++|+||+|+++|++++|..||.....
T Consensus       157 ~NIll~~~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~  234 (336)
T 3fhr_A          157 ENLLYTSKEKDAVLKLTDFGFAKETTQNA--LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTG  234 (336)
T ss_dssp             GGEEESCSSTTCCEEECCCTTCEEC------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----
T ss_pred             HHEEEEecCCCceEEEeccccceeccccc--cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccc
Confidence            5899976   4559999999998654322  2234578899999999887788899999999999999999999863322


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .......... ........+.+....   ....+.+++.+||+.||++|||++++++|+|+....
T Consensus       235 ~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          235 QAISPGMKRR-IRLGQYGFPNPEWSE---VSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             -----------------CCCTTTSTT---CCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             hhhhhhHHHh-hhccccccCchhhcc---CCHHHHHHHHHHCCCChhHCcCHHHHhcCccccccc
Confidence            1110000000 001111111111111   122357899999999999999999999999998754

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.89  E-value=5e-24  Score=147.75  Aligned_cols=133  Identities=13%  Similarity=0.159  Sum_probs=90.7

Q ss_pred             Cceeec--CCCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILN--SNLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~--~~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +|||++  .++.+||+|||+++.+.....       ......||+.|+|||.+.+..++.++||||+|+++|+|++|..|
T Consensus       181 ~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~P  260 (364)
T 3op5_A          181 SNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLP  260 (364)
T ss_dssp             GGEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred             HHEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            599999  889999999999987643221       11234589999999999988889999999999999999999999


Q ss_pred             cccccccCCCCC-----chhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           72 RDLLSSLSSSSD-----PKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        72 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      |...........     ............++....      ...+.+++..||+.||++||+++++++.+...
T Consensus       261 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~  327 (364)
T 3op5_A          261 WEDNLKDPKYVRDSKIRYRENIASLMDKCFPAANA------PGEIAKYMETVKLLDYTEKPLYENLRDILLQG  327 (364)
T ss_dssp             TGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCC------CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHHHhhhhHHHHHHHhcccccC------HHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence            973211000000     000001111111110100      12357899999999999999999999876544

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.1e-23  Score=148.95  Aligned_cols=131  Identities=24%  Similarity=0.329  Sum_probs=85.3

Q ss_pred             CceeecC-----CCceEEcccccceeccCCC---CccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHh-c
Q 040414            1 NNIILNS-----NLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLM-G   68 (160)
Q Consensus         1 ~nill~~-----~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~-g   68 (160)
                      +|||++.     ...+||+|||+++......   .......||+.|+|||++.+   ..++.++||||+||+++++++ |
T Consensus       147 ~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g  226 (432)
T 3p23_A          147 HNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEG  226 (432)
T ss_dssp             TSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTS
T ss_pred             HHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCC
Confidence            5999953     3357899999998664332   12233568999999999873   446678999999999999999 8


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..||....       .. ............... ........+.+|+.+||+.||.+|||++++++|+|+..
T Consensus       227 ~~pf~~~~-------~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~  289 (432)
T 3p23_A          227 SHPFGKSL-------QR-QANILLGACSLDCLH-PEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWS  289 (432)
T ss_dssp             CBTTBSTT-------TH-HHHHHTTCCCCTTSC-TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCC
T ss_pred             CCCcchhh-------HH-HHHHHhccCCccccC-ccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccC
Confidence            88885111       11 111111111111111 11112223578999999999999999999999999964

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.89  E-value=1e-23  Score=140.65  Aligned_cols=125  Identities=26%  Similarity=0.459  Sum_probs=85.8

Q ss_pred             CceeecC--------CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcc
Q 040414            1 NNIILNS--------NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPR   72 (160)
Q Consensus         1 ~nill~~--------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~   72 (160)
                      +||+++.        ++.+||+|||.++.......  ....+++.|+|||.+.+..++.++|+||+|++++++++|..||
T Consensus       137 ~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  214 (271)
T 3dtc_A          137 SNILILQKVENGDLSNKILKITDFGLAREWHRTTK--MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF  214 (271)
T ss_dssp             GGEEESSCCSSSCCSSCCEEECCCCC---------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHEEEecccccccccCcceEEccCCcccccccccc--cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            5899985        67899999999976543322  2346888999999998888889999999999999999999998


Q ss_pred             ccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           73 DLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ...       ................+.+.....   .+.+++.+||+.||++|||++++++++.
T Consensus       215 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~e~l~~L~  269 (271)
T 3dtc_A          215 RGI-------DGLAVAYGVAMNKLALPIPSTCPE---PFAKLMEDCWNPDPHSRPSFTNILDQLT  269 (271)
T ss_dssp             TTS-------CHHHHHHHHHTSCCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCC-------CHHHHHHhhhcCCCCCCCCcccCH---HHHHHHHHHhcCCcccCcCHHHHHHHHh
Confidence            622       122222333333333222222222   3578999999999999999999999874

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.89  E-value=6.5e-24  Score=145.29  Aligned_cols=130  Identities=22%  Similarity=0.331  Sum_probs=93.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       146 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-  224 (327)
T 3poz_A          146 RNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-  224 (327)
T ss_dssp             GGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred             heEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC-
Confidence            5999999999999999999876543222  122345778999999998888999999999999999999 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                             .......+......+.+.....   .+.+++.+||+.||++|||++++++++.....
T Consensus       225 -------~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~  278 (327)
T 3poz_A          225 -------ASEISSILEKGERLPQPPICTI---DVYMIMVKCWMIDADSRPKFRELIIEFSKMAR  278 (327)
T ss_dssp             -------GGGHHHHHHTTCCCCCCTTBCH---HHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcCCChhhCCCHHHHHHHHHHHHh
Confidence                   1222223322222222222222   34679999999999999999999999866543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=1.6e-23  Score=144.80  Aligned_cols=133  Identities=25%  Similarity=0.387  Sum_probs=93.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccC--CCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTM--VMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~--~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++....... ......+|+.|+|||++.+.  .++.++|+||+|+++|+|++|..||.....
T Consensus       188 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~  267 (355)
T 1vzo_A          188 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  267 (355)
T ss_dssp             GGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             HHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCc
Confidence            599999999999999999986543222 22345689999999998853  357789999999999999999999863221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~~  141 (160)
                         ................+.+  ...   ...+.+++.+||+.||.+||     +++++++|+|+...
T Consensus       268 ---~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~  328 (355)
T 1vzo_A          268 ---KNSQAEISRRILKSEPPYP--QEM---SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  328 (355)
T ss_dssp             ---CCCHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             ---cchHHHHHHHHhccCCCCC--ccc---CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcC
Confidence               1111122222222222211  111   12246899999999999999     99999999999863

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.89  E-value=7.6e-24  Score=145.91  Aligned_cols=134  Identities=17%  Similarity=0.201  Sum_probs=92.9

Q ss_pred             CceeecCCC--ceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNL--EAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~--~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +||+++.++  .+||+|||+++.+.....       ......+++.|+|||++.+..++.++|+||+|+++|+|++|..|
T Consensus       180 ~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p  259 (345)
T 2v62_A          180 ANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLP  259 (345)
T ss_dssp             GGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHEEEccCCCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            599998877  999999999987643211       11335688999999999988888999999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHHH------HHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVI------QDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      |.....   ................+    ....      .....+.+++.+||+.||++|||++++++.+.....
T Consensus       260 f~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          260 WEQNLK---DPVAVQTAKTNLLDELP----QSVLKWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             TGGGTT---CHHHHHHHHHHHHHTTT----HHHHHHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             cccccc---ccHHHHHHHHhhccccc----HHHHhhccccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            952111   00000111111111111    1110      111245789999999999999999999999876553

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.88  E-value=3.8e-24  Score=145.46  Aligned_cols=133  Identities=25%  Similarity=0.329  Sum_probs=89.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......   ......|++.|+|||.+.+..++.++|+||+|+++|+|++|..||...  
T Consensus       145 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~--  222 (311)
T 3ork_A          145 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD--  222 (311)
T ss_dssp             GGEEEETTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS--
T ss_pred             HHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC--
Confidence            599999999999999999986543321   122345899999999998888888999999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           ...............++ ..........+.+++.+||+.||++||++.+++.+.|+...
T Consensus       223 -----~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          223 -----SPVSVAYQHVREDPIPP-SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             -----SHHHHHHHHHHCCCCCH-HHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             -----ChHHHHHHHhcCCCCCc-ccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence                 22222233332222211 00001112335789999999999999999999999998863

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.88  E-value=4e-23  Score=140.33  Aligned_cols=131  Identities=25%  Similarity=0.380  Sum_probs=93.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--------------ccccccccccCCcccccCCCCCCcCeeehHHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--------------TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVL   66 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--------------~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~   66 (160)
                      +||+++.++.+||+|||+++.........              ....||+.|+|||.+.+..++.++|+||+|+++|+++
T Consensus       137 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~  216 (310)
T 3s95_A          137 HNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEII  216 (310)
T ss_dssp             TSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHH
T ss_pred             CeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHh
Confidence            59999999999999999998764332211              1356899999999999888899999999999999999


Q ss_pred             hcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           67 MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      +|..|+..........  ............+...+.       .+.+++.+||+.||++|||++++++.+....
T Consensus       217 ~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~  281 (310)
T 3s95_A          217 GRVNADPDYLPRTMDF--GLNVRGFLDRYCPPNCPP-------SFFPITVRCCDLDPEKRPSFVKLEHWLETLR  281 (310)
T ss_dssp             HTCCSSTTTSCBCTTS--SBCHHHHHHHTCCTTCCT-------THHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             cCCCCCcchhhhHHHH--hhhhhccccccCCCCCCH-------HHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence            9999876432221111  111222222222332222       2467899999999999999999999876654

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.88  E-value=1.4e-23  Score=143.16  Aligned_cols=123  Identities=22%  Similarity=0.301  Sum_probs=92.2

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++ .++.+||+|||+++......  .....+++.|+|||.+.+... +.++|+||+|+++|++++|..||..... 
T Consensus       178 ~NIll~~~~~~~kL~Dfg~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-  254 (320)
T 3a99_A          178 ENILIDLNRGELKLIDFGSGALLKDTV--YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-  254 (320)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCSSC--BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-
T ss_pred             HHEEEeCCCCCEEEeeCcccccccccc--ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhh-
Confidence            599999 77999999999998765332  233568899999999887665 5678999999999999999999863211 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                               ... .....+...+       ..+.+++.+||+.||++|||++++++|+|+.....
T Consensus       255 ---------~~~-~~~~~~~~~~-------~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~  302 (320)
T 3a99_A          255 ---------IIR-GQVFFRQRVS-------SECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLL  302 (320)
T ss_dssp             ---------HHH-CCCCCSSCCC-------HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCC
T ss_pred             ---------hhc-ccccccccCC-------HHHHHHHHHHccCChhhCcCHHHHhcCHhhcCccC
Confidence                     100 0111112222       12468999999999999999999999999987553

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.88  E-value=1.4e-23  Score=143.45  Aligned_cols=130  Identities=25%  Similarity=0.309  Sum_probs=91.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......++..|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       144 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-  222 (325)
T 3kex_A          144 RNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR-  222 (325)
T ss_dssp             TTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC-
T ss_pred             heEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC-
Confidence            599999999999999999987643322  2233456778999999998888999999999999999999 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ... ....+........+.....   .+.+++.+||+.||.+|||++++++++.....
T Consensus       223 ------~~~-~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~  276 (325)
T 3kex_A          223 ------LAE-VPDLLEKGERLAQPQICTI---DVYMVMVKCWMIDENIRPTFKELANEFTRMAR  276 (325)
T ss_dssp             ------TTH-HHHHHHTTCBCCCCTTBCT---TTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTT
T ss_pred             ------HHH-HHHHHHcCCCCCCCCcCcH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence                  111 2222222211111111111   24678999999999999999999999876643

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.88  E-value=1.1e-23  Score=142.31  Aligned_cols=133  Identities=20%  Similarity=0.226  Sum_probs=94.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc------cCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY------TMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~------~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||.+....... ......+++.|+|||.+.      ...++.++|+||+|++++++++|..||..
T Consensus       153 ~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  231 (298)
T 1phk_A          153 ENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH  231 (298)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ceEEEcCCCcEEEecccchhhcCCCc-ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC
Confidence            59999999999999999998654332 233456888999999885      33467789999999999999999999852


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .       ................+.+ ........+.+++.+||+.||++|||++++++|+|+....
T Consensus       232 ~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (298)
T 1phk_A          232 R-------KQMLMLRMIMSGNYQFGSP-EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYV  291 (298)
T ss_dssp             S-------SHHHHHHHHHHTCCCCCTT-TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC
T ss_pred             c-------cHHHHHHHHhcCCcccCcc-cccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhcc
Confidence            2       1222222222222222111 0111122357899999999999999999999999998643

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.88  E-value=6.9e-24  Score=144.37  Aligned_cols=130  Identities=25%  Similarity=0.332  Sum_probs=85.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||++....... ......+++.|+|||.+.     ...++.++|+||+|+++|+|++|..||...
T Consensus       154 ~Nil~~~~~~~kl~dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (318)
T 2dyl_A          154 SNILLDERGQIKLCDFGISGRLVDDK-AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC  232 (318)
T ss_dssp             GGEEECTTSCEEECCCTTC---------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             HHEEECCCCCEEEEECCCchhccCCc-cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence            59999999999999999987654322 223345888999999985     345677899999999999999999998621


Q ss_pred             cccCCCCCchhhHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .      ..............+. +....   ....+.+++.+||+.||.+|||++++++|+|+.+
T Consensus       233 ~------~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~  289 (318)
T 2dyl_A          233 K------TDFEVLTKVLQEEPPLLPGHMG---FSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR  289 (318)
T ss_dssp             C------SHHHHHHHHHHSCCCCCCSSSC---CCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHH
T ss_pred             C------ccHHHHHHHhccCCCCCCccCC---CCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHh
Confidence            1      1122222222222211 11001   1123468999999999999999999999999986

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.88  E-value=2.6e-23  Score=145.02  Aligned_cols=129  Identities=22%  Similarity=0.317  Sum_probs=94.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|++++++++ |..||.... 
T Consensus       220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~-  298 (382)
T 3tt0_A          220 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP-  298 (382)
T ss_dssp             GGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ceEEEcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            599999999999999999986543321  2223446778999999998888899999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .......+........+.....   .+.+++.+||+.||++|||++++++++....
T Consensus       299 -------~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  351 (382)
T 3tt0_A          299 -------VEELFKLLKEGHRMDKPSNCTN---ELYMMMRDCWHAVPSQRPTFKQLVEDLDRIV  351 (382)
T ss_dssp             -------HHHHHHHHHTTCCCCCCSSCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                   1222233322222222222222   2478999999999999999999999987664

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.88  E-value=7.5e-24  Score=145.09  Aligned_cols=133  Identities=16%  Similarity=0.166  Sum_probs=92.1

Q ss_pred             CceeecCCCc-----eEEcccccceeccCCCCc-------cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLE-----AFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~-----~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +|||++.++.     +||+|||+++........       .....||+.|+|||++.+..++.++|+||+|+++|+|++|
T Consensus       134 ~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g  213 (330)
T 2izr_A          134 ENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG  213 (330)
T ss_dssp             GGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcC
Confidence            5999998887     999999999876443221       2345689999999999988888999999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                      ..||.....    ...............+.+......... .+.+++..||+.||.+||+++++.+.+.-
T Consensus       214 ~~Pf~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~  278 (330)
T 2izr_A          214 SLPWQGLKA----DTLKERYQKIGDTKRATPIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTD  278 (330)
T ss_dssp             SCTTTTCCC----SSHHHHHHHHHHHHHHSCHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHH
T ss_pred             CCCcccccc----ccHHHHHHHHHhhhccCCHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence            999973321    111111111111111111000000011 46789999999999999999999887653

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.1e-23  Score=146.16  Aligned_cols=132  Identities=22%  Similarity=0.262  Sum_probs=94.0

Q ss_pred             CceeecCCC---ceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccc
Q 040414            1 NNIILNSNL---EAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~---~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~   74 (160)
                      +|||++.++   .+||+|||+++......  .......+++.|+|||++.+..++.++|+||+|+++|+|++ |..||..
T Consensus       210 ~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~  289 (367)
T 3l9p_A          210 RNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS  289 (367)
T ss_dssp             GGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            599999555   49999999997543221  22233457889999999988888999999999999999998 9999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      .       .......... .......+.....   .+.+++.+||+.||++|||+++++++++......
T Consensus       290 ~-------~~~~~~~~i~-~~~~~~~~~~~~~---~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~  347 (367)
T 3l9p_A          290 K-------SNQEVLEFVT-SGGRMDPPKNCPG---PVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  347 (367)
T ss_dssp             C-------CHHHHHHHHH-TTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             C-------CHHHHHHHHH-cCCCCCCCccCCH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence            2       1222222222 2221111111111   2468999999999999999999999999887553

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.88  E-value=4.7e-24  Score=144.25  Aligned_cols=134  Identities=25%  Similarity=0.389  Sum_probs=87.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-----ccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-----NRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-----~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||.+........     ......+++.|+|||.+.+ ..++.++|+||+|++++++++|..||..
T Consensus       150 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  229 (303)
T 2vwi_A          150 GNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHK  229 (303)
T ss_dssp             GGEEECTTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             hhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence            599999999999999999875543211     1223468889999999875 4578899999999999999999999863


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHH------HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKV------IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ...       ............+. .....      ......+.+++.+||+.||++|||++++++|+|+....
T Consensus       230 ~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  295 (303)
T 2vwi_A          230 YPP-------MKVLMLTLQNDPPS-LETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAK  295 (303)
T ss_dssp             SCG-------GGHHHHHHTSSCCC-TTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC----
T ss_pred             Cch-------hhHHHHHhccCCCc-cccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcCC
Confidence            221       11111111111111 00000      00112357899999999999999999999999998643

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.88  E-value=8.4e-24  Score=145.03  Aligned_cols=139  Identities=17%  Similarity=0.229  Sum_probs=89.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--------ccccccccccccCCccccc-------CCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--------NRTLLAGTYGYIAPELAYT-------MVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--------~~~~~~~~~~~~~Pe~~~~-------~~~~~~~di~s~G~~~~~l   65 (160)
                      +|||++.++.+||+|||+++.+.....        ......||+.|+|||++.+       ..++.++||||+|+++|+|
T Consensus       149 ~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~el  228 (336)
T 3g2f_A          149 RNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEI  228 (336)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHH
Confidence            599999999999999999987643221        1123468999999999876       3345679999999999999


Q ss_pred             HhcCCccccccccCCCCC---------ch-hhHHH-hhhcCCCCCCCH---HHHHHHHHHHHHHHhhhccCCCCCCCHHH
Q 040414           66 LMGKHPRDLLSSLSSSSD---------PK-IMLID-VLDQRLPPPVDQ---KVIQDILLASTISFACLQSNPKSRPTMQY  131 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~---------~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~l~~~cl~~dp~~Rps~~~  131 (160)
                      ++|..||...........         +. ..... .......+..+.   ........+.+++.+||+.||++|||+++
T Consensus       229 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e  308 (336)
T 3g2f_A          229 FMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQX  308 (336)
T ss_dssp             HTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHH
T ss_pred             HhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHH
Confidence            999776543222111000         00 01111 111111111111   11112334688999999999999999999


Q ss_pred             HHHHHhhh
Q 040414          132 VSQEFLIT  139 (160)
Q Consensus       132 ~~~~~~~~  139 (160)
                      +++.+...
T Consensus       309 ~l~~L~~l  316 (336)
T 3g2f_A          309 AEERMAEL  316 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98876544

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.88  E-value=2.4e-23  Score=141.43  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++++|++ |..||.... 
T Consensus       174 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-  252 (313)
T 1t46_A          174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP-  252 (313)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC-
T ss_pred             ceEEEcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc-
Confidence            5999999999999999999866543321  223446778999999988888899999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            .................+....   ..+.+++.+||+.||.+|||++++++++...-
T Consensus       253 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  306 (313)
T 1t46_A          253 ------VDSKFYKMIKEGFRMLSPEHAP---AEMYDIMKTCWDADPLKRPTFKQIVQLIEKQI  306 (313)
T ss_dssp             ------SSHHHHHHHHHTCCCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------chhHHHHHhccCCCCCCcccCC---HHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence                  1222222222222222111111   23478999999999999999999999986543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.88  E-value=4.6e-23  Score=137.31  Aligned_cols=131  Identities=24%  Similarity=0.332  Sum_probs=92.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+......... .....+++.|+|||.+.+..++.++|+||+|++++++++ |..||....  
T Consensus       133 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~--  210 (268)
T 3sxs_A          133 RNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT--  210 (268)
T ss_dssp             GGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred             ceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC--
Confidence            5999999999999999999865443221 122335667999999988888899999999999999998 999986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           ........... .....+....   ..+.+++..||+.||++|||++++++++....+.
T Consensus       211 -----~~~~~~~~~~~-~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          211 -----NSEVVLKVSQG-HRLYRPHLAS---DTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             -----HHHHHHHHHTT-CCCCCCTTSC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             -----hHHHHHHHHcC-CCCCCCCcCh---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence                 22222222222 1111111111   1357899999999999999999999998776543

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.88  E-value=1.5e-23  Score=141.10  Aligned_cols=132  Identities=23%  Similarity=0.357  Sum_probs=83.5

Q ss_pred             CceeecCCCceEEcccccceeccCC--CCccccccccccccCCcccc---cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD--SSNRTLLAGTYGYIAPELAY---TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++.++.+||+|||+++.....  ........+++.|+|||.+.   +..++.++|+||+|++++++++|..||...
T Consensus       149 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  228 (289)
T 3og7_A          149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI  228 (289)
T ss_dssp             GGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence            5999999999999999998754421  11223356889999999986   455677899999999999999999998622


Q ss_pred             cccCCCCCchhhHHHhh-hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           76 SSLSSSSDPKIMLIDVL-DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      .       ......... ..................+.+++.+||+.||++|||++++++.+...
T Consensus       229 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l  286 (289)
T 3og7_A          229 N-------NRDQIIEMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEEL  286 (289)
T ss_dssp             C-------CHHHHHHHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             c-------hHHHHHHHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHH
Confidence            1       122222222 22222211110011122357899999999999999999999987654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.88  E-value=2.2e-23  Score=141.79  Aligned_cols=130  Identities=22%  Similarity=0.286  Sum_probs=93.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++........  .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       177 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~-  255 (316)
T 2xir_A          177 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-  255 (316)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccc-
Confidence            5999999999999999999865433221  223456788999999988888899999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ........+........+....   ..+.+++.+||+.||.+|||++++++++...-
T Consensus       256 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  309 (316)
T 2xir_A          256 ------IDEEFCRRLKEGTRMRAPDYTT---PEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL  309 (316)
T ss_dssp             ------CSHHHHHHHHHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHhccCccCCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                  1222222222222111111111   12467999999999999999999999987553

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.88  E-value=8.2e-24  Score=144.00  Aligned_cols=135  Identities=20%  Similarity=0.164  Sum_probs=90.2

Q ss_pred             Cceeec-CCCceEEcccccceeccCCC---CccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +||+++ .++.+||+|||.++......   .......++..|+|||.+.. ..++.++|+||+|+++|++++|..||...
T Consensus       149 ~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  228 (320)
T 2i6l_A          149 ANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGA  228 (320)
T ss_dssp             GGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             HHEEEcCCCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCC
Confidence            599997 56799999999998654221   11223456888999998765 56788899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcC-------------------------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           76 SSLSSSSDPKIMLIDVLDQR-------------------------LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                      ..       ...........                         ...+...........+.+++.+||+.||++|||++
T Consensus       229 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~  301 (320)
T 2i6l_A          229 HE-------LEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAE  301 (320)
T ss_dssp             SH-------HHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHH
T ss_pred             CH-------HHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHH
Confidence            21       11111111100                         00000000001123467899999999999999999


Q ss_pred             HHHHHHhhhccC
Q 040414          131 YVSQEFLITRKT  142 (160)
Q Consensus       131 ~~~~~~~~~~~~  142 (160)
                      ++++|+|+....
T Consensus       302 ell~hp~~~~~~  313 (320)
T 2i6l_A          302 EALSHPYMSIYS  313 (320)
T ss_dssp             HHHTSHHHHTTC
T ss_pred             HHhCCccccccc
Confidence            999999998643

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.88  E-value=1.7e-23  Score=143.74  Aligned_cols=140  Identities=21%  Similarity=0.300  Sum_probs=94.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccCC------CCCCcCeeehHHHHHHHHhc--
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMV------MTEKCDVYSFGVVTLEVLMG--   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~~------~~~~~di~s~G~~~~~l~~g--   68 (160)
                      +||+++.++.+||+|||+++........    .....+++.|+|||.+.+..      ++.++|+||+|+++|+|++|  
T Consensus       176 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~  255 (342)
T 1b6c_B          176 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS  255 (342)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccC
Confidence            5999999999999999999876543321    23346889999999987652      23579999999999999999  


Q ss_pred             --------CCccccccccCCCCCchhhHHHhhhcCCCCCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           69 --------KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        69 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                              ..||......  .................+..+..  .......+.+++.+||+.||++|||++++++++..
T Consensus       256 ~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~  333 (342)
T 1b6c_B          256 IGGIHEDYQLPYYDLVPS--DPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ  333 (342)
T ss_dssp             BTTBCCCCCCTTTTTSCS--SCCHHHHHHHHTTSCCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHH
T ss_pred             cCCcccccccCccccCcC--cccHHHHHHHHHHHHhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHH
Confidence                    5565422110  01111112222233333333321  12233446889999999999999999999999887


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ..+.
T Consensus       334 i~~~  337 (342)
T 1b6c_B          334 LSQQ  337 (342)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            6543

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.88  E-value=3.2e-23  Score=141.76  Aligned_cols=131  Identities=24%  Similarity=0.362  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||+++.........   ....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||... 
T Consensus       180 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~-  258 (325)
T 3kul_A          180 RNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNM-  258 (325)
T ss_dssp             GGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTS-
T ss_pred             ceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccC-
Confidence            59999999999999999998765432211   12334668999999988888889999999999999998 99998522 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                            .... ....+......+.+.....   .+.+++..||+.||++|||++++++.+......
T Consensus       259 ------~~~~-~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          259 ------TNRD-VISSVEEGYRLPAPMGCPH---ALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             ------CHHH-HHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             ------CHHH-HHHHHHcCCCCCCCCCcCH---HHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence                  1222 2222222222222222222   347899999999999999999999998776544

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=5.1e-23  Score=143.15  Aligned_cols=131  Identities=24%  Similarity=0.284  Sum_probs=84.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~   75 (160)
                      +||+++.++.+||+|||+++.......    ......+++.|+|||.+.+..++.++|+||+|+++|++++ |.+||...
T Consensus       221 ~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~  300 (373)
T 3c1x_A          221 RNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  300 (373)
T ss_dssp             GGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             heEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence            599999999999999999986543221    1122346678999999998888999999999999999999 67777532


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..       ........... ....+.....   .+.+++.+||+.||++|||++++++++......
T Consensus       301 ~~-------~~~~~~~~~~~-~~~~p~~~~~---~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~  356 (373)
T 3c1x_A          301 NT-------FDITVYLLQGR-RLLQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELVSRISAIFST  356 (373)
T ss_dssp             CS-------SCHHHHHHTTC-CCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CH-------HHHHHHHHcCC-CCCCCCCCCH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            21       11111111111 1111111111   246799999999999999999999998876543

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.88  E-value=2.9e-23  Score=142.07  Aligned_cols=131  Identities=22%  Similarity=0.320  Sum_probs=88.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       146 ~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~-  224 (327)
T 3lzb_A          146 RNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-  224 (327)
T ss_dssp             GGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred             HHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC-
Confidence            5999999999999999999865433221  122345778999999998888999999999999999999 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                             .......+......+.+.....   .+.+++.+||+.||.+|||++++++.+......
T Consensus       225 -------~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~  279 (327)
T 3lzb_A          225 -------ASEISSILEKGERLPQPPICTI---DVYMIMRKCWMIDADSRPKFRELIIEFSKMARD  279 (327)
T ss_dssp             -------GGGHHHHHHTTCCCCCCTTBCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred             -------HHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence                   1222222222222222222222   247799999999999999999999988766543

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.88  E-value=1.4e-23  Score=141.70  Aligned_cols=132  Identities=24%  Similarity=0.327  Sum_probs=86.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++....... ......+++.|+|||.+.+..++.++|+||+|+++|++++|..||....   
T Consensus       140 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~---  216 (294)
T 4eqm_A          140 QNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET---  216 (294)
T ss_dssp             GGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC---
T ss_pred             HHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC---
Confidence            599999999999999999976543321 2233568999999999998888889999999999999999999996221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-CHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-TMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-s~~~~~~~~~~~  139 (160)
                          ........+....+.............+.+++.+||+.||.+|| +++++.+.+...
T Consensus       217 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~  273 (294)
T 4eqm_A          217 ----AVSIAIKHIQDSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSV  273 (294)
T ss_dssp             ----HHHHHHHHHSSCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTS
T ss_pred             ----hHHHHHHHhhccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHH
Confidence                22222222222221100000001122357899999999999999 666666655443

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.88  E-value=8.2e-23  Score=137.34  Aligned_cols=126  Identities=29%  Similarity=0.430  Sum_probs=88.6

Q ss_pred             CceeecCCCc-----eEEcccccceeccCCCCccccccccccccCCcccc--cCCCCCCcCeeehHHHHHHHHhcCCccc
Q 040414            1 NNIILNSNLE-----AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY--TMVMTEKCDVYSFGVVTLEVLMGKHPRD   73 (160)
Q Consensus         1 ~nill~~~~~-----~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~--~~~~~~~~di~s~G~~~~~l~~g~~~~~   73 (160)
                      +||+++.++.     +||+|||+++....   ......+++.|+|||.+.  ...++.++|+||+|+++|++++|..||.
T Consensus       153 ~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~---~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  229 (287)
T 4f0f_A          153 PNIFLQSLDENAPVCAKVADFGLSQQSVH---SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFD  229 (287)
T ss_dssp             GGEEESCCCTTCSCCEEECCCTTCBCCSS---CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             ceEEEeccCCCCceeEEeCCCCccccccc---cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCc
Confidence            5999987776     99999999875432   223356889999999984  3446778999999999999999999986


Q ss_pred             cccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           74 LLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ....     ..................+.....   .+.+++.+||+.||++|||++++++.+.
T Consensus       230 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~~ll~~L~  285 (287)
T 4f0f_A          230 EYSY-----GKIKFINMIREEGLRPTIPEDCPP---RLRNVIELCWSGDPKKRPHFSYIVKELS  285 (287)
T ss_dssp             TCCC-----CHHHHHHHHHHSCCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             cccc-----cHHHHHHHHhccCCCCCCCcccCH---HHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence            2221     111112222223333333222222   3578999999999999999999998764

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.88  E-value=1.9e-23  Score=143.12  Aligned_cols=130  Identities=23%  Similarity=0.312  Sum_probs=93.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  271 (333)
T 2i1m_A          193 RNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGIL-  271 (333)
T ss_dssp             GGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC-
T ss_pred             ceEEECCCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccc-
Confidence            5999999999999999999865433221  223446778999999988888899999999999999998 889986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            .................+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       272 ------~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  325 (333)
T 2i1m_A          272 ------VNSKFYKLVKDGYQMAQPAFAP---KNIYSIMQACWALEPTHRPTFQQICSFLQEQA  325 (333)
T ss_dssp             ------SSHHHHHHHHHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHhcCCCCCCCCCCC---HHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence                  1222222222222222221111   23467999999999999999999999886543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.88  E-value=3.4e-23  Score=141.33  Aligned_cols=129  Identities=19%  Similarity=0.313  Sum_probs=80.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       166 ~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~-  244 (323)
T 3qup_A          166 RNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE-  244 (323)
T ss_dssp             GGEEECTTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred             ceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC-
Confidence            5999999999999999999865433211  122345678999999988888999999999999999999 899986322 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-------HHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-------MQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-------~~~~~~~~~~~~  140 (160)
                            ............ ....+....   ..+.+++.+||+.||++|||       +++++.|+|+..
T Consensus       245 ------~~~~~~~~~~~~-~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~  304 (323)
T 3qup_A          245 ------NAEIYNYLIGGN-RLKQPPECM---EEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLS  304 (323)
T ss_dssp             ------GGGHHHHHHTTC-CCCCCTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred             ------hHHHHHHHhcCC-CCCCCCccC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcC
Confidence                  222222222221 111111111   23578999999999999999       455555555554

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.87  E-value=2.8e-23  Score=144.62  Aligned_cols=129  Identities=21%  Similarity=0.267  Sum_probs=91.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc--ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~--~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.........  ....++..|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       242 ~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~-  320 (377)
T 3cbl_A          242 RNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS-  320 (377)
T ss_dssp             GGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC-
T ss_pred             HHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            59999999999999999998644321111  11234667999999988888899999999999999998 999986321 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .......+......+.+..++.   .+.+++.+||+.||++|||++++++.+....
T Consensus       321 -------~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~  373 (377)
T 3cbl_A          321 -------NQQTREFVEKGGRLPCPELCPD---AVFRLMEQCWAYEPGQRPSFSTIYQELQSIR  373 (377)
T ss_dssp             -------HHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCCCCCCCCCCH---HHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence                   1122222222222222222222   2467999999999999999999999876543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.87  E-value=3.6e-23  Score=147.26  Aligned_cols=130  Identities=25%  Similarity=0.392  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++....... ......++..|+|||++....++.++|+||+|+++|+|++ |..||...   
T Consensus       313 ~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~---  389 (454)
T 1qcf_A          313 ANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM---  389 (454)
T ss_dssp             GGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC---
T ss_pred             HHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC---
Confidence            599999999999999999986543211 1112335678999999998888999999999999999998 99998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          ....... .+......+.+..+..   .+.+++.+||+.||++|||+++++..+.....
T Consensus       390 ----~~~~~~~-~i~~~~~~~~~~~~~~---~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          390 ----SNPEVIR-ALERGYRMPRPENCPE---ELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             ----CHHHHHH-HHHHTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             ----CHHHHHH-HHHcCCCCCCCCCCCH---HHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence                1222222 2222222222222222   24689999999999999999999988876543

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.87  E-value=1e-22  Score=136.51  Aligned_cols=127  Identities=24%  Similarity=0.357  Sum_probs=94.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||.+....... ......+++.|+|||.+.+..++.++|+||+|+++++|++|..|+....    
T Consensus       151 ~Nil~~~~~~~kl~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~----  225 (284)
T 2a19_B          151 SNIFLVDTKQVKIGDFGLVTSLKNDG-KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETS----  225 (284)
T ss_dssp             GGEEEEETTEEEECCCTTCEESSCCS-CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHH----
T ss_pred             HHEEEcCCCCEEECcchhheeccccc-cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHH----
Confidence            59999999999999999998765432 2233458889999999988888899999999999999999988875211    


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPL  144 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~  144 (160)
                           ...........+...+.       .+.+++.+||+.||.+|||+++++++++.......
T Consensus       226 -----~~~~~~~~~~~~~~~~~-------~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~  277 (284)
T 2a19_B          226 -----KFFTDLRDGIISDIFDK-------KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE  277 (284)
T ss_dssp             -----HHHHHHHTTCCCTTSCH-------HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred             -----HHHHHhhcccccccCCH-------HHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence                 11111222222222221       24679999999999999999999999999876544

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.87  E-value=5.3e-23  Score=139.66  Aligned_cols=132  Identities=18%  Similarity=0.249  Sum_probs=83.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.++.+||+|||++..............+++.|+|||.+.+..++.++|+||+|++++++++|..||.....   
T Consensus       165 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~---  241 (310)
T 2wqm_A          165 ANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKM---  241 (310)
T ss_dssp             GGEEECTTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---C---
T ss_pred             HHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch---
Confidence            59999999999999999988655443333345688899999999888888899999999999999999999852211   


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                        ..............+.......   ...+.+++.+||+.||++|||++++++++....
T Consensus       242 --~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~  296 (310)
T 2wqm_A          242 --NLYSLCKKIEQCDYPPLPSDHY---SEELRQLVNMCINPDPEKRPDVTYVYDVAKRMH  296 (310)
T ss_dssp             --CHHHHHHHHHTTCSCCCCTTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --hHHHHHHHhhcccCCCCccccc---CHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence              1111112222222221111111   123578999999999999999999999987665

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.87  E-value=2.7e-23  Score=148.60  Aligned_cols=135  Identities=17%  Similarity=0.246  Sum_probs=92.4

Q ss_pred             Cceee---cCCCceEEcccccceeccCCCCc-------cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIIL---NSNLEAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill---~~~~~~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|||+   +.++.+||+|||+++.+......       .....+++.|++||.+.+..++.++||||+|+++|+|++|..
T Consensus       132 ~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~  211 (483)
T 3sv0_A          132 DNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSL  211 (483)
T ss_dssp             GGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             ceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCC
Confidence            59999   58899999999999876543221       124568999999999998888999999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ||......    .....+...............+......+.+++..||+.||++||++++|++.+...
T Consensus       212 Pf~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l  276 (483)
T 3sv0_A          212 PWQGLKAG----TKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL  276 (483)
T ss_dssp             TTSSCCCS----SHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred             CCccccch----hHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence            99743211    111111111111111100001111122457899999999999999999998865443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.87  E-value=7.3e-23  Score=139.07  Aligned_cols=128  Identities=22%  Similarity=0.364  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       179 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~-  257 (314)
T 2ivs_A          179 RNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP-  257 (314)
T ss_dssp             GGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             heEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC-
Confidence            5999999999999999999866433221  122346778999999988888889999999999999999 999986222 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            .. .....+........+....   ..+.+++.+||+.||++|||++++++++...
T Consensus       258 ------~~-~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~  309 (314)
T 2ivs_A          258 ------PE-RLFNLLKTGHRMERPDNCS---EEMYRLMLQCWKQEPDKRPVFADISKDLEKM  309 (314)
T ss_dssp             ------GG-GHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------HH-HHHHHhhcCCcCCCCccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                  11 2222222222222222111   2357899999999999999999999987654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.87  E-value=6.8e-23  Score=145.74  Aligned_cols=129  Identities=27%  Similarity=0.380  Sum_probs=88.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++........ .....++..|+|||.+.+..++.++|+||+|+++|+|++ |..||...   
T Consensus       309 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~---  385 (452)
T 1fmk_A          309 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM---  385 (452)
T ss_dssp             GGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC---
T ss_pred             hhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC---
Confidence            5999999999999999999865432211 122345678999999988888999999999999999999 89998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ........ +......+.+..+..   .+.+++.+||+.||++|||++++++.+.-.-
T Consensus       386 ----~~~~~~~~-i~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~  439 (452)
T 1fmk_A          386 ----VNREVLDQ-VERGYRMPCPPECPE---SLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  439 (452)
T ss_dssp             ----CHHHHHHH-HHTTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTT
T ss_pred             ----CHHHHHHH-HHcCCCCCCCCCCCH---HHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence                12222222 222222222222222   3468999999999999999999999876554

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=1.4e-22  Score=136.80  Aligned_cols=129  Identities=26%  Similarity=0.299  Sum_probs=90.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC----CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcC-Cccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS----SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGK-HPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~-~~~~~~   75 (160)
                      +||+++.++.+||+|||+++......    .......+++.|++||.+.+..++.++|+||+|+++|++++|. +||...
T Consensus       153 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~  232 (298)
T 3pls_A          153 RNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI  232 (298)
T ss_dssp             GGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             ceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC
Confidence            59999999999999999997554321    1222345678899999999888889999999999999999955 444311


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             . .......+......+.+....   ..+.+++.+||+.||.+|||++++++.+....
T Consensus       233 -------~-~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~  286 (298)
T 3pls_A          233 -------D-PFDLTHFLAQGRRLPQPEYCP---DSLYQVMQQCWEADPAVRPTFRVLVGEVEQIV  286 (298)
T ss_dssp             -------C-GGGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------C-HHHHHHHhhcCCCCCCCccch---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                   1 112222222222222222111   23578999999999999999999999887654

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.3e-22  Score=137.66  Aligned_cols=128  Identities=24%  Similarity=0.425  Sum_probs=85.9

Q ss_pred             CceeecCCCc-eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLE-AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~-~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++. +||+|||.+......   .....+++.|+|||.+.+..++.++|+||+|+++++|++|..||.....  
T Consensus       134 ~NIll~~~~~~~kl~Dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--  208 (307)
T 2eva_A          134 PNLLLVAGGTVLKICDFGTACDIQTH---MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGG--  208 (307)
T ss_dssp             GGEEEETTTTEEEECCCCC---------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCS--
T ss_pred             hHEEEeCCCCEEEEcccccccccccc---cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCc--
Confidence            5999988886 799999998754322   1234588899999999988889999999999999999999999863211  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ..............++......   ..+.+++.+||+.||++|||++++++++....
T Consensus       209 ----~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  262 (307)
T 2eva_A          209 ----PAFRIMWAVHNGTRPPLIKNLP---KPIESLMTRCWSKDPSQRPSMEEIVKIMTHLM  262 (307)
T ss_dssp             ----SHHHHHHHHHTTCCCCCBTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHG
T ss_pred             ----cHHHHHHHHhcCCCCCcccccC---HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHH
Confidence                1111111111222222211111   22478999999999999999999999877654

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.87  E-value=5.8e-23  Score=137.76  Aligned_cols=128  Identities=20%  Similarity=0.283  Sum_probs=82.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||+++........ .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       145 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~--  222 (281)
T 1mp8_A          145 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--  222 (281)
T ss_dssp             GGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--
T ss_pred             HHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC--
Confidence            5999999999999999999865443221 122345678999999988888889999999999999996 899986322  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ......... .....+.+....   ..+.+++.+||+.||++|||++++++++...
T Consensus       223 -----~~~~~~~i~-~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  274 (281)
T 1mp8_A          223 -----NNDVIGRIE-NGERLPMPPNCP---PTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  274 (281)
T ss_dssp             -----GGGHHHHHH-TTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHH-cCCCCCCCCCCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHH
Confidence                 122222222 211122222222   2346899999999999999999999998755

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.87  E-value=7.5e-23  Score=140.15  Aligned_cols=127  Identities=19%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc------------cccccccccccCCccc---ccCCCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN------------RTLLAGTYGYIAPELA---YTMVMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~------------~~~~~~~~~~~~Pe~~---~~~~~~~~~di~s~G~~~~~l   65 (160)
                      +||+++.++.+||+|||+++........            .....+++.|+|||++   .+..++.++|+||+|+++|+|
T Consensus       167 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el  246 (337)
T 3ll6_A          167 ENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLL  246 (337)
T ss_dssp             GGCEECTTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHH
T ss_pred             ccEEECCCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHH
Confidence            5999999999999999999865432211            1134578899999998   455577899999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ++|..||.......       ................       .+.+++.+||+.||.+|||++++++++.....
T Consensus       247 ~~g~~p~~~~~~~~-------~~~~~~~~~~~~~~~~-------~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~  308 (337)
T 3ll6_A          247 CFRQHPFEDGAKLR-------IVNGKYSIPPHDTQYT-------VFHSLIRAMLQVNPEERLSIAEVVHQLQEIAA  308 (337)
T ss_dssp             HHSSCCC-------------------CCCCTTCCSSG-------GGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             HhCCCCCcchhHHH-------hhcCcccCCcccccch-------HHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            99999986322211       1111111111111111       14678999999999999999999999987753

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.87  E-value=8.2e-23  Score=145.25  Aligned_cols=126  Identities=19%  Similarity=0.285  Sum_probs=90.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++......   ....++..|+|||++.+..++.++|+||+|+++|+|++ |..||....   
T Consensus       318 ~Nill~~~~~~kl~DfG~a~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~---  391 (450)
T 1k9a_A          318 RNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---  391 (450)
T ss_dssp             GGEEECTTSCEEECCCTTCEECC---------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC---
T ss_pred             hhEEECCCCCEEEeeCCCcccccccc---cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC---
Confidence            59999999999999999998543221   12346778999999998889999999999999999998 999986322   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ....... +......+.+..+..   .+.+++.+||+.||++|||++++++.+....
T Consensus       392 ----~~~~~~~-i~~~~~~~~p~~~~~---~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~  444 (450)
T 1k9a_A          392 ----LKDVVPR-VEKGYKMDAPDGCPP---AVYDVMKNCWHLDAATRPTFLQLREQLEHIR  444 (450)
T ss_dssp             ----TTTHHHH-HHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ----HHHHHHH-HHcCCCCCCCCcCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence                1112222 222222222222222   2467999999999999999999998876544

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.87  E-value=7.7e-23  Score=137.13  Aligned_cols=129  Identities=21%  Similarity=0.260  Sum_probs=89.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+......... .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       142 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~--  219 (281)
T 3cc6_A          142 RNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLE--  219 (281)
T ss_dssp             GGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred             ceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCC--
Confidence            5999999999999999998865433221 122345778999999988888889999999999999998 999986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ........ ......+.+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       220 -----~~~~~~~~-~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~  272 (281)
T 3cc6_A          220 -----NKDVIGVL-EKGDRLPKPDLCP---PVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY  272 (281)
T ss_dssp             -----GGGHHHHH-HHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----hHHHHHHH-hcCCCCCCCCCCC---HHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence                 11111111 1111111111111   22578999999999999999999999986543

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=7.9e-23  Score=137.49  Aligned_cols=129  Identities=22%  Similarity=0.282  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++........   .....+++.|+|||.+.+..++.++|+||+|++++++++ |..||....
T Consensus       139 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  218 (287)
T 1u59_A          139 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  218 (287)
T ss_dssp             GGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             heEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC
Confidence            5999999999999999999876433221   122345788999999988878889999999999999998 999986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             ... ....+........+....   ..+.+++.+||+.||++||++++++++++..-
T Consensus       219 -------~~~-~~~~i~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~  271 (287)
T 1u59_A          219 -------GPE-VMAFIEQGKRMECPPECP---PELYALMSDCWIYKWEDRPDFLTVEQRMRACY  271 (287)
T ss_dssp             -------THH-HHHHHHTTCCCCCCTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------HHH-HHHHHhcCCcCCCCCCcC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                   112 222222222222222222   23578999999999999999999999987663

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.87  E-value=5.6e-23  Score=138.20  Aligned_cols=131  Identities=25%  Similarity=0.244  Sum_probs=92.0

Q ss_pred             CceeecCC---CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSN---LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~---~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.+   +.+||+|||.+....... ......+++.|+|||.+.+. ++.++|+||+|++++++++|..||...  
T Consensus       150 ~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~--  225 (287)
T 2wei_A          150 ENILLESKEKDCDIKIIDFGLSTCFQQNT-KMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGK--  225 (287)
T ss_dssp             GGEEESCSSTTCCEEECSTTGGGTBCCCS-SCSCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCS--
T ss_pred             hhEEEecCCCcccEEEeccCcceeecCCC-ccccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCC--
Confidence            48999754   469999999987654332 22234578899999988754 788899999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                           ................+.+ ........+.+++.+||+.||++|||++++++|+|+.+-
T Consensus       226 -----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          226 -----NEYDILKRVETGKYAFDLP-QWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             -----SHHHHHHHHHHCCCCCCSG-GGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             -----CHHHHHHHHHcCCCCCCch-hhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence                 1222222222232222211 111112235789999999999999999999999999864

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.87  E-value=6.3e-23  Score=138.03  Aligned_cols=131  Identities=21%  Similarity=0.313  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++........   .....+++.|+|||.+.+..++.++|+||+|++++++++ |..||... 
T Consensus       150 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~-  228 (291)
T 1u46_A          150 RNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGL-  228 (291)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTC-
T ss_pred             heEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccC-
Confidence            5999999999999999999876443221   122346778999999988878889999999999999999 99998622 


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ................+......   ..+.+++.+||+.||++|||++++++++.....
T Consensus       229 ------~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~  284 (291)
T 1u46_A          229 ------NGSQILHKIDKEGERLPRPEDCP---QDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQP  284 (291)
T ss_dssp             ------CHHHHHHHHHTSCCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-
T ss_pred             ------CHHHHHHHHHccCCCCCCCcCcC---HHHHHHHHHHccCCcccCcCHHHHHHHHHHhCc
Confidence                  22222233322222222222221   235789999999999999999999998876553

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.87  E-value=1.8e-22  Score=136.89  Aligned_cols=134  Identities=29%  Similarity=0.432  Sum_probs=92.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.++........  .....+++.|+|||.+.+ .++.++|+||+|+++|++++|.+||......
T Consensus       162 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~  240 (307)
T 2nru_A          162 ANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREP  240 (307)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSS
T ss_pred             HHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcch
Confidence            5999999999999999999865432221  223468899999998865 4678899999999999999999998743321


Q ss_pred             CCCCCchh-------hHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKI-------MLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ........       .+...+.... ......   ....+.+++.+||+.||.+|||++++++++...
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l  304 (307)
T 2nru_A          241 QLLLDIKEEIEDEEKTIEDYIDKKM-NDADST---SVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEM  304 (307)
T ss_dssp             SBTTHHHHHHHTTSCCHHHHSCSSC-SCCCHH---HHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhccccc-cccchH---HHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHH
Confidence            10000000       0111111111 112222   233467899999999999999999999988654

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.87  E-value=1.9e-22  Score=137.07  Aligned_cols=122  Identities=23%  Similarity=0.399  Sum_probs=90.4

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +||+++ .++.+||+|||.++......  .....++..|++||.+.+..+ +.++|+||+|+++|++++|..||..... 
T Consensus       168 ~Nil~~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-  244 (312)
T 2iwi_A          168 ENILIDLRRGCAKLIDFGSGALLHDEP--YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQE-  244 (312)
T ss_dssp             GGEEEETTTTEEEECCCSSCEECCSSC--BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-
T ss_pred             hhEEEeCCCCeEEEEEcchhhhcccCc--ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHH-
Confidence            589999 88999999999998765432  234558889999999877665 3479999999999999999999862211 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                               ... .....+....       ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       245 ---------~~~-~~~~~~~~~~-------~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          245 ---------ILE-AELHFPAHVS-------PDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             ---------HHH-TCCCCCTTSC-------HHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC--
T ss_pred             ---------Hhh-hccCCcccCC-------HHHHHHHHHHccCChhhCcCHHHHhcChhhcCch
Confidence                     111 1111122221       1246799999999999999999999999998743

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.87  E-value=4.3e-23  Score=138.48  Aligned_cols=117  Identities=12%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             CCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccCCCCCch
Q 040414            7 SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPK   85 (160)
Q Consensus         7 ~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~~~~~~   85 (160)
                      ....+||+|||.+.......    ...+++.|+|||.+.+. .++.++|+||+|++++++++|.+++....         
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~---------  235 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISSPQ----VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGD---------  235 (289)
T ss_dssp             -CCCEEECCCTTCEETTCSC----CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSH---------
T ss_pred             CceEEEEcccccccccCCcc----ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchh---------
Confidence            34478999999998754332    23478899999998765 45578999999999999999987754111         


Q ss_pred             hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           86 IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                       .......... +..+....   ..+.+++.+||+.||++|||++++++|+|+...
T Consensus       236 -~~~~~~~~~~-~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          236 -QWHEIRQGRL-PRIPQVLS---QEFTELLKVMIHPDPERRPSAMALVKHSVLLSA  286 (289)
T ss_dssp             -HHHHHHTTCC-CCCSSCCC---HHHHHHHHHHTCSSGGGSCCHHHHHTCTTC---
T ss_pred             -HHHHHHcCCC-CCCCcccC---HHHHHHHHHHhCCCcccCCCHHHHhhChHhhhh
Confidence             1111111111 11111111   224789999999999999999999999999864

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.87  E-value=1.1e-22  Score=138.71  Aligned_cols=129  Identities=22%  Similarity=0.268  Sum_probs=92.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|+++|++++ |..||...  
T Consensus       167 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~--  244 (322)
T 1p4o_A          167 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL--  244 (322)
T ss_dssp             GGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS--
T ss_pred             ceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC--
Confidence            599999999999999999876543321  1122346778999999988888899999999999999999 88888622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ............... ..+....   ..+.+++.+||+.||.+|||++++++++...-
T Consensus       245 -----~~~~~~~~~~~~~~~-~~~~~~~---~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~  298 (322)
T 1p4o_A          245 -----SNEQVLRFVMEGGLL-DKPDNCP---DMLFELMRMCWQYNPKMRPSFLEIISSIKEEM  298 (322)
T ss_dssp             -----CHHHHHHHHHTTCCC-CCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGS
T ss_pred             -----CHHHHHHHHHcCCcC-CCCCCCC---HHHHHHHHHHcCCCcccCcCHHHHHHHHHHhh
Confidence                 122222222222221 1111111   22478999999999999999999999986653

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.87  E-value=1.9e-23  Score=141.16  Aligned_cols=130  Identities=24%  Similarity=0.364  Sum_probs=84.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC--------------CccccccccccccCCcccccC-CCCCCcCeeehHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--------------SNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEV   65 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--------------~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l   65 (160)
                      +||+++.++.+||+|||.+.......              .......+++.|+|||.+.+. .++.++|+||+|+++|+|
T Consensus       145 ~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l  224 (303)
T 1zy4_A          145 MNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEM  224 (303)
T ss_dssp             GGEEECTTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHH
T ss_pred             HhEEEcCCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHH
Confidence            59999999999999999987654221              112234578899999998764 578899999999999999


Q ss_pred             HhcCCccccccccCCCCCchhhHHHh--hhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           66 LMGKHPRDLLSSLSSSSDPKIMLIDV--LDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        66 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ++   ||....      .........  .....+........   ..+.+++.+||+.||++|||++++++|+|+....
T Consensus       225 ~~---p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (303)
T 1zy4_A          225 IY---PFSTGM------ERVNILKKLRSVSIEFPPDFDDNKM---KVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVKH  291 (303)
T ss_dssp             HS---CCSSHH------HHHHHHHHHHSTTCCCCTTCCTTTS---HHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCC
T ss_pred             Hh---ccCCch------hHHHHHHhccccccccCccccccch---HHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCCC
Confidence            97   332100      001111111  11122222222221   2247899999999999999999999999997644

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.87  E-value=4.9e-23  Score=137.30  Aligned_cols=130  Identities=22%  Similarity=0.296  Sum_probs=92.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||+++....... ......+++.|+|||.+.+..++.++|+||+|++++++++ |..||...   
T Consensus       135 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~---  211 (269)
T 4hcu_A          135 RNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR---  211 (269)
T ss_dssp             GGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC---
T ss_pred             heEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCC---
Confidence            599999999999999999976543211 1122345678999999988888999999999999999999 89998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                          ......... ........+....   ..+.+++.+||+.||++|||++++++++....+
T Consensus       212 ----~~~~~~~~~-~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~  266 (269)
T 4hcu_A          212 ----SNSEVVEDI-STGFRLYKPRLAS---THVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  266 (269)
T ss_dssp             ----CHHHHHHHH-HTTCCCCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHH-hcCccCCCCCcCC---HHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence                122222222 2222221111111   224789999999999999999999999876543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.87  E-value=5.2e-23  Score=138.82  Aligned_cols=137  Identities=20%  Similarity=0.280  Sum_probs=89.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......   ......++..|+|||.+.+..++.++|+||+|+++|++++|..|+.....
T Consensus       143 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~  222 (295)
T 3ugc_A          143 RNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA  222 (295)
T ss_dssp             GGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHH
T ss_pred             hhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChH
Confidence            599999999999999999986643322   11223466679999999988889999999999999999999888642210


Q ss_pred             -----cCCCCCch---hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 -----LSSSSDPK---IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 -----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ........   ......+......+.+.....   .+.+++.+||+.||++|||++++++.+....
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~el~~~L~~l~  290 (295)
T 3ugc_A          223 EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCPD---EIYMIMTECWNNNVNQRPSFRDLALRVDQIR  290 (295)
T ss_dssp             HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHhhhcCccccchhHHHHHHHHhccCcCCCCcCcCH---HHHHHHHHHcCCChhhCCCHHHHHHHHHHHH
Confidence                 01111111   111222222222222222222   3478999999999999999999999886554

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.87  E-value=7.9e-23  Score=137.16  Aligned_cols=129  Identities=22%  Similarity=0.298  Sum_probs=91.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.++....... ......+++.|+|||.+.+..++.++|+||+|+++|++++ |..||....  
T Consensus       149 ~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~--  226 (283)
T 3gen_A          149 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT--  226 (283)
T ss_dssp             GGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC--
T ss_pred             ceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC--
Confidence            599999999999999999976543211 1122345678999999998888899999999999999998 999986222  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ....... +........+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       227 -----~~~~~~~-~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~  279 (283)
T 3gen_A          227 -----NSETAEH-IAQGLRLYRPHLAS---EKVYTIMYSCWHEKADERPTFKILLSNILDVM  279 (283)
T ss_dssp             -----HHHHHHH-HHTTCCCCCCTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----hhHHHHH-HhcccCCCCCCcCC---HHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence                 1222222 22222111111111   22468999999999999999999999987543

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.87  E-value=7.8e-23  Score=140.51  Aligned_cols=131  Identities=20%  Similarity=0.277  Sum_probs=92.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||...  
T Consensus       203 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~--  280 (343)
T 1luf_A          203 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGM--  280 (343)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS--
T ss_pred             ceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCC--
Confidence            599999999999999999876543221  1223456888999999988888899999999999999998 99998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           .............. ...+....   ..+.+++.+||+.||++|||++++++++......
T Consensus       281 -----~~~~~~~~~~~~~~-~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~  336 (343)
T 1luf_A          281 -----AHEEVIYYVRDGNI-LACPENCP---LELYNLMRLCWSKLPADRPSFCSIHRILQRMCER  336 (343)
T ss_dssp             -----CHHHHHHHHHTTCC-CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC-
T ss_pred             -----ChHHHHHHHhCCCc-CCCCCCCC---HHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhh
Confidence                 12222222222222 11121111   2357899999999999999999999998766543

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.86  E-value=1.8e-22  Score=137.18  Aligned_cols=128  Identities=23%  Similarity=0.315  Sum_probs=86.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......  ......+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||.... 
T Consensus       176 ~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-  254 (313)
T 3brb_A          176 RNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ-  254 (313)
T ss_dssp             GGEEECTTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC-
Confidence            599999999999999999876543221  1122346778999999988888899999999999999999 888886221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                            ........... .....+....   ..+.+++.+||+.||++|||++++++++...
T Consensus       255 ------~~~~~~~~~~~-~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l  306 (313)
T 3brb_A          255 ------NHEMYDYLLHG-HRLKQPEDCL---DELYEIMYSCWRTDPLDRPTFSVLRLQLEKL  306 (313)
T ss_dssp             ------GGGHHHHHHTT-CCCCCBTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHcC-CCCCCCcccc---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                  12222222222 1112211111   2357899999999999999999999998654

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.86  E-value=1.3e-22  Score=139.07  Aligned_cols=129  Identities=23%  Similarity=0.306  Sum_probs=92.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++........  .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||.... 
T Consensus       186 ~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~-  264 (334)
T 2pvf_A          186 RNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP-  264 (334)
T ss_dssp             GGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             ceEEEcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC-
Confidence            5999999999999999999866543221  122345778999999988888889999999999999998 999986221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                            ... ....+........+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       265 ------~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~  317 (334)
T 2pvf_A          265 ------VEE-LFKLLKEGHRMDKPANCT---NELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL  317 (334)
T ss_dssp             ------HHH-HHHHHHHTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ------HHH-HHHHHhcCCCCCCCccCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                  112 222222222222221111   22467999999999999999999999987654

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.86  E-value=8.8e-23  Score=146.60  Aligned_cols=129  Identities=25%  Similarity=0.328  Sum_probs=93.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++........ .....++..|+|||++.+..++.++|+||+|+++|+|++ |..||....  
T Consensus       347 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--  424 (495)
T 1opk_A          347 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--  424 (495)
T ss_dssp             GGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--
T ss_pred             hhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--
Confidence            5999999999999999999876433211 122335678999999988888899999999999999998 899986322  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           .. .....+......+.+..+..   .+.+++.+||+.||++|||++++++.+...-
T Consensus       425 -----~~-~~~~~~~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          425 -----LS-QVYELLEKDYRMERPEGCPE---KVYELMRACWQWNPSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             -----GG-GHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             -----HH-HHHHHHHcCCCCCCCCCCCH---HHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence                 11 22223333332222222222   2467999999999999999999999876543

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.86  E-value=9.1e-23  Score=139.52  Aligned_cols=137  Identities=23%  Similarity=0.306  Sum_probs=94.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||+++.......   ......++..|+|||.+.+..++.++|+||+|++++++++|..||.....
T Consensus       156 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~  235 (327)
T 3lxl_A          156 RNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSA  235 (327)
T ss_dssp             GGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred             hhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccc
Confidence            599999999999999999987654322   11234467789999999888888899999999999999999999853221


Q ss_pred             c-------CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 L-------SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ....................+.+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~  302 (327)
T 3lxl_A          236 EFLRMMGCERDVPALSRLLELLEEGQRLPAPPACP---AEVHELMKLCWAPSPQDRPSFSALGPQLDMLW  302 (327)
T ss_dssp             HHHHHCC----CCHHHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-
T ss_pred             hhhhhcccccccccHHHHHHHhhcccCCCCCCccc---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            0       001111122222233333222222222   23478999999999999999999999887654

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=3e-22  Score=137.33  Aligned_cols=129  Identities=26%  Similarity=0.350  Sum_probs=86.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.++........   .....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||....
T Consensus       176 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~  255 (333)
T 1mqb_A          176 RNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELS  255 (333)
T ss_dssp             GGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             heEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCC
Confidence            5999999999999999999865433211   112335678999999988888889999999999999998 999985221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             ... ....+......+.+....   ..+.+++.+||+.||++||++.++++++....
T Consensus       256 -------~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~  308 (333)
T 1mqb_A          256 -------NHE-VMKAINDGFRLPTPMDCP---SAIYQLMMQCWQQERARRPKFADIVSILDKLI  308 (333)
T ss_dssp             -------HHH-HHHHHHTTCCCCCCTTCB---HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             -------HHH-HHHHHHCCCcCCCcccCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                   122 222222222222222222   23478999999999999999999999987654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.86  E-value=8.9e-23  Score=141.95  Aligned_cols=129  Identities=26%  Similarity=0.350  Sum_probs=81.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||+++.........   ....++..|+|||.+.+..++.++|+||+|+++|++++ |..||....
T Consensus       176 ~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~  255 (373)
T 2qol_A          176 RNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMS  255 (373)
T ss_dssp             GGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCC
T ss_pred             ceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence            59999999999999999998664432211   11234667999999998888999999999999999997 999985221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .. .....+......+.+....   ..+.+++.+||+.||++||+++++++.+....
T Consensus       256 -------~~-~~~~~i~~~~~~~~~~~~~---~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~  308 (373)
T 2qol_A          256 -------NQ-DVIKAVDEGYRLPPPMDCP---AALYQLMLDCWQKDRNNRPKFEQIVSILDKLI  308 (373)
T ss_dssp             -------HH-HHHHHHHTTEECCCCTTCB---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------HH-HHHHHHHcCCCCCCCcccc---HHHHHHHHHHhCcChhhCcCHHHHHHHHHHHH
Confidence                   11 2222222222111111111   23478999999999999999999999876654

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.86  E-value=1.6e-22  Score=148.48  Aligned_cols=127  Identities=23%  Similarity=0.297  Sum_probs=87.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +|||++.++.+||+|||+++........   .....+++.|+|||++.+..++.++||||+|+++|+|++ |..||....
T Consensus       465 ~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  544 (613)
T 2ozo_A          465 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  544 (613)
T ss_dssp             GGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             HHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence            5999999999999999999865432211   112334578999999988889999999999999999998 999986322


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             .... ...+......+.+..+..   .+.+++.+||+.||++||+++++++.+..
T Consensus       545 -------~~~~-~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~RPs~~~l~~~L~~  595 (613)
T 2ozo_A          545 -------GPEV-MAFIEQGKRMECPPECPP---ELYALMSDCWIYKWEDRPDFLTVEQRMRA  595 (613)
T ss_dssp             -------SHHH-HHHHHTTCCCCCCTTCCH---HHHHHHHHTTCSSTTTSCCHHHHHHHHHH
T ss_pred             -------HHHH-HHHHHcCCCCCCCCcCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                   1222 222222222222222222   24679999999999999999998766543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.86  E-value=1.3e-22  Score=149.42  Aligned_cols=127  Identities=22%  Similarity=0.283  Sum_probs=89.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +|||++.++.+||+|||+++.+.....   ......+++.|+|||++.+..++.++||||+|+++|+|++ |..||....
T Consensus       498 ~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~  577 (635)
T 4fl3_A          498 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  577 (635)
T ss_dssp             GGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             HhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            599999999999999999986643321   1122345678999999998889999999999999999998 999986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             . ......+......+.+..+..   .+.+++..||+.||++|||+++|++.+..
T Consensus       578 -------~-~~~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~RPs~~~l~~~L~~  628 (635)
T 4fl3_A          578 -------G-SEVTAMLEKGERMGCPAGCPR---EMYDLMNLCWTYDVENRPGFAAVELRLRN  628 (635)
T ss_dssp             -------H-HHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSTTTSCCHHHHHHHHHH
T ss_pred             -------H-HHHHHHHHcCCCCCCCCCCCH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHH
Confidence                   1 222223333222222222222   34689999999999999999999887653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.86  E-value=4.1e-22  Score=132.69  Aligned_cols=125  Identities=15%  Similarity=0.236  Sum_probs=89.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCC---CcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTE---KCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~---~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.++++|||.......     ....+++.|+|||.+.+.....   ++|+||+|+++|++++|..||...  
T Consensus       142 ~Nil~~~~~~~~l~~~~~~~~~~~-----~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~--  214 (271)
T 3kmu_A          142 RSVMIDEDMTARISMADVKFSFQS-----PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADL--  214 (271)
T ss_dssp             GGEEECTTSCEEEEGGGSCCTTSC-----TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTS--
T ss_pred             ceEEEcCCcceeEEeccceeeecc-----cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCcccc--
Confidence            599999999999998887653222     2245788999999988765444   699999999999999999998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ...............+..+.....   .+.+++.+||+.||++|||++++++.+....
T Consensus       215 -----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~~il~~L~~l~  269 (271)
T 3kmu_A          215 -----SNMEIGMKVALEGLRPTIPPGISP---HVSKLMKICMNEDPAKRPKFDMIVPILEKMQ  269 (271)
T ss_dssp             -----CHHHHHHHHHHSCCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC
T ss_pred             -----ChHHHHHHHHhcCCCCCCCCCCCH---HHHHHHHHHcCCChhhCcCHHHHHHHHHHhh
Confidence                 222223333333333322222222   2478999999999999999999999876543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.86  E-value=5.9e-23  Score=140.03  Aligned_cols=137  Identities=19%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.++........   .....++..|+|||.+.+..++.++|+||+|++++++++|..||.....
T Consensus       163 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~  242 (318)
T 3lxp_A          163 RNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPT  242 (318)
T ss_dssp             GGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred             heEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccch
Confidence            5999999999999999999876543221   2234467789999999888888899999999999999999999863211


Q ss_pred             c-------CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 L-------SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       .............+......+.+....   ..+.+++.+||+.||++|||++++++.+....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~  309 (318)
T 3lxp_A          243 KFLELIGIAQGQMTVLRLTELLERGERLPRPDKCP---AEVYHLMKNCWETEASFRPTFENLIPILKTVH  309 (318)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             hhhhhhcccccchhHHHHHHHHhcccCCCCCcccc---HHHHHHHHHHcCCCcccCcCHHHHHHHHHHHH
Confidence            0       000001111222223332222222222   23578999999999999999999998876554

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.86  E-value=2.8e-22  Score=135.03  Aligned_cols=128  Identities=22%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc---ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR---TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~---~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||.+..........   ....+++.|+|||.+.+..++.++|+||+|+++|++++ |..||....
T Consensus       146 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  225 (291)
T 1xbb_A          146 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  225 (291)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             ceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            59999999999999999998764432211   12335678999999988878889999999999999998 999986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                             . ......+........+....   ..+.+++.+||+.||++|||++++++.+.-.
T Consensus       226 -------~-~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~  277 (291)
T 1xbb_A          226 -------G-SEVTAMLEKGERMGCPAGCP---REMYDLMNLCWTYDVENRPGFAAVELRLRNY  277 (291)
T ss_dssp             -------H-HHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             -------H-HHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHH
Confidence                   1 12222222222222222222   2357899999999999999999998876543

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.86  E-value=3.1e-22  Score=134.01  Aligned_cols=126  Identities=17%  Similarity=0.269  Sum_probs=85.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||.+.......   ....+++.|+|||.+.+..++.++|+||+|++++++++ |..||....   
T Consensus       146 ~Nil~~~~~~~~l~Dfg~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~---  219 (278)
T 1byg_A          146 RNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---  219 (278)
T ss_dssp             GGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC---
T ss_pred             ceEEEeCCCcEEEeeccccccccccc---cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC---
Confidence            59999999999999999987544322   22346778999999988888899999999999999998 999986221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ... ....+........+....   ..+.+++.+||+.||++|||++++++.+....
T Consensus       220 ----~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~  272 (278)
T 1byg_A          220 ----LKD-VVPRVEKGYKMDAPDGCP---PAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK  272 (278)
T ss_dssp             ----GGG-HHHHHTTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ----HHH-HHHHHhcCCCCCCcccCC---HHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence                111 222222222222221111   23478999999999999999999999876554

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.86  E-value=2.6e-22  Score=134.89  Aligned_cols=129  Identities=25%  Similarity=0.317  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.++|+|||.+......... .....+++.|+|||.+.+..++.++|+||+|++++++++ |..||....  
T Consensus       140 ~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~--  217 (288)
T 3kfa_A          140 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--  217 (288)
T ss_dssp             GGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC--
T ss_pred             ceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--
Confidence            5999999999999999999865543322 222345778999999988888899999999999999999 899986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           .. .....+........+....   ..+.+++.+||+.||.+|||++++++.+....
T Consensus       218 -----~~-~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~  270 (288)
T 3kfa_A          218 -----LS-QVYELLEKDYRMERPEGCP---EKVYELMRACWQWNPSDRPSFAEIHQAFETMF  270 (288)
T ss_dssp             -----GG-GHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -----HH-HHHHHHhccCCCCCCCCCC---HHHHHHHHHHhCCChhhCcCHHHHHHHHHHHH
Confidence                 11 2222222222222222221   23578999999999999999999999876543

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.86  E-value=1.9e-22  Score=137.93  Aligned_cols=132  Identities=22%  Similarity=0.287  Sum_probs=91.5

Q ss_pred             CceeecC---CCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDL   74 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~   74 (160)
                      +||+++.   +..+||+|||.++.......  ......+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||..
T Consensus       169 ~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~  248 (327)
T 2yfx_A          169 RNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPS  248 (327)
T ss_dssp             GGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             hHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            5899984   44699999999875433221  1223456888999999988888899999999999999998 8899862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      .       ...... ..+........+....   ..+.+++.+||+.||.+|||+++++++++......
T Consensus       249 ~-------~~~~~~-~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~  306 (327)
T 2yfx_A          249 K-------SNQEVL-EFVTSGGRMDPPKNCP---GPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP  306 (327)
T ss_dssp             C-------CHHHHH-HHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred             c-------CHHHHH-HHHhcCCCCCCCCCCC---HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence            2       111222 2222211111111111   23468999999999999999999999999886543

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.85  E-value=2e-22  Score=137.78  Aligned_cols=128  Identities=23%  Similarity=0.239  Sum_probs=90.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||+++...... ......+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||....   
T Consensus       171 ~NIl~~~~~~~kL~Dfg~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~---  246 (327)
T 1fvr_A          171 RNILVGENYVAKIADFGLSRGQEVYV-KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT---  246 (327)
T ss_dssp             GGEEECGGGCEEECCTTCEESSCEEC-CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC---
T ss_pred             ceEEEcCCCeEEEcccCcCccccccc-cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc---
Confidence            59999999999999999987433211 1122345778999999988878889999999999999998 999986221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ... ....+........+....   ..+.+++.+||+.||++|||++++++++....
T Consensus       247 ----~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~  299 (327)
T 1fvr_A          247 ----CAE-LYEKLPQGYRLEKPLNCD---DEVYDLMRQCWREKPYERPSFAQILVSLNRML  299 (327)
T ss_dssp             ----HHH-HHHHGGGTCCCCCCTTBC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ----HHH-HHHHhhcCCCCCCCCCCC---HHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                122 222222222222221111   23578999999999999999999999987654

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.85  E-value=6.2e-23  Score=141.70  Aligned_cols=136  Identities=14%  Similarity=0.140  Sum_probs=92.2

Q ss_pred             CceeecCCC--ceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNL--EAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~--~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +||+++.++  .+||+|||+++.+.....       ......+++.|+|||.+.+..++.++|+||+|+++|+|++|..|
T Consensus       188 ~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  267 (352)
T 2jii_A          188 ENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLP  267 (352)
T ss_dssp             GGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCT
T ss_pred             HHEEEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            599999988  899999999986543221       11234688899999999988888999999999999999999999


Q ss_pred             cccccccCCCCCchhhHHHhhhcCCCCCCCHHH---HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           72 RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      |.......   ................ .....   ......+.+++.+||+.||++|||++++++.+....
T Consensus       268 f~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~  335 (352)
T 2jii_A          268 WTNCLPNT---EDIMKQKQKFVDKPGP-FVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALL  335 (352)
T ss_dssp             TGGGTTCH---HHHHHHHHHHHHSCCC-EECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHH
T ss_pred             cccCCcCH---HHHHHHHHhccCChhh-hhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHH
Confidence            87332100   0000111111111110 00000   000123578999999999999999999999876654

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.85  E-value=5.4e-22  Score=134.01  Aligned_cols=129  Identities=23%  Similarity=0.264  Sum_probs=88.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC----ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~   75 (160)
                      +||+++.++.+||+|||.++.......    ......+++.|+|||.+.+..++.++|+||+|++++++++ +.+||...
T Consensus       157 ~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~  236 (298)
T 3f66_A          157 RNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  236 (298)
T ss_dssp             GGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTS
T ss_pred             heEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccC
Confidence            599999999999999999986543221    1122446778999999988888899999999999999999 56666422


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .       ............. ...+....   ..+.+++.+||+.||++|||++++++.+....
T Consensus       237 ~-------~~~~~~~~~~~~~-~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~  290 (298)
T 3f66_A          237 N-------TFDITVYLLQGRR-LLQPEYCP---DPLYEVMLKCWHPKAEMRPSFSELVSRISAIF  290 (298)
T ss_dssp             C-------TTTHHHHHHTTCC-CCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             C-------HHHHHHHHhcCCC-CCCCccCC---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence            1       1111222221111 11111111   12478999999999999999999999876553

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.85  E-value=2.2e-22  Score=136.07  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=92.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.+||+|||.+........   ......++..|+|||.+.+..++.++|+||+|++++++++|..|+.....
T Consensus       155 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~  234 (302)
T 4e5w_A          155 RNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA  234 (302)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH
T ss_pred             heEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh
Confidence            599999999999999999987654432   12234567789999999888888899999999999999999988642110


Q ss_pred             -------cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 -------LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                             .....................+.+....   ..+.+++.+||+.||.+|||++++++.+..
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~ll~~L~~  299 (302)
T 4e5w_A          235 LFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCP---DEVYQLMRKCWEFQPSNRTSFQNLIEGFEA  299 (302)
T ss_dssp             HHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHTTCSSGGGSCCHHHHHHHHHH
T ss_pred             HHhhccCCcccccCHHHHHHHHhccCCCCCCCCCC---HHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence                   0001111112222222222222222221   235789999999999999999999988753

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.85  E-value=2e-22  Score=145.97  Aligned_cols=129  Identities=27%  Similarity=0.383  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++....... ......++..|+|||++.+..++.++||||+|+++|+|++ |..||....  
T Consensus       392 ~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~--  469 (535)
T 2h8h_A          392 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMV--  469 (535)
T ss_dssp             GGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCC--
T ss_pred             hhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC--
Confidence            599999999999999999986542211 1112335678999999988888999999999999999999 899986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                           ....... +......+.+..+..   .+.+++.+||+.||++|||+++|++.+...-
T Consensus       470 -----~~~~~~~-i~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~  522 (535)
T 2h8h_A          470 -----NREVLDQ-VERGYRMPCPPECPE---SLHDLMCQCWRKEPEERPTFEYLQAFLEDYF  522 (535)
T ss_dssp             -----HHHHHHH-HHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTSS
T ss_pred             -----HHHHHHH-HHcCCCCCCCCCCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence                 1222222 222222222222222   2468999999999999999999999876554

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.85  E-value=5.5e-22  Score=132.82  Aligned_cols=128  Identities=25%  Similarity=0.354  Sum_probs=90.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.+......... .....++..|+|||.+.+..++.++|+||+|+++++|++ |..||....  
T Consensus       138 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~--  215 (279)
T 1qpc_A          138 ANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT--  215 (279)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC--
T ss_pred             hhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccC--
Confidence            5999999999999999999876543211 122345678999999988878889999999999999999 899986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ... ....+........+....   ..+.+++.+||+.||++|||++++++.+.-.
T Consensus       216 -----~~~-~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~  267 (279)
T 1qpc_A          216 -----NPE-VIQNLERGYRMVRPDNCP---EELYQLMRLCWKERPEDRPTFDYLRSVLEDF  267 (279)
T ss_dssp             -----HHH-HHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHH-HHHHHhcccCCCCccccc---HHHHHHHHHHhccChhhCCCHHHHHHHHHHH
Confidence                 122 222222222222221111   2357899999999999999999998876543

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.85  E-value=2.5e-22  Score=133.61  Aligned_cols=129  Identities=22%  Similarity=0.295  Sum_probs=91.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||.++....... ......++..|+|||.+.+..++.++|+||+|++++++++ |..||...   
T Consensus       133 ~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~---  209 (267)
T 3t9t_A          133 RNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR---  209 (267)
T ss_dssp             GGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC---
T ss_pred             heEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC---
Confidence            599999999999999999876532211 1122345678999999988888889999999999999999 89998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ......... ........+...   ...+.+++.+||+.||++|||++++++++....
T Consensus       210 ----~~~~~~~~i-~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~  263 (267)
T 3t9t_A          210 ----SNSEVVEDI-STGFRLYKPRLA---STHVYQIMNHCWRERPEDRPAFSRLLRQLAEIA  263 (267)
T ss_dssp             ----CHHHHHHHH-HTTCCCCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHH-hcCCcCCCCccC---cHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence                112222222 222211111111   123478999999999999999999999987654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.85  E-value=6.9e-22  Score=138.44  Aligned_cols=136  Identities=18%  Similarity=0.169  Sum_probs=94.0

Q ss_pred             Cceee----cCCCceEEcccccceeccCCCCccccccccccccCCccccc--------CCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIIL----NSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT--------MVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill----~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~--------~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||++    +.++.+||+|||+++...... ......+++.|+|||++..        ..++.++|+||+|+++|+|++|
T Consensus       141 ~NIll~~~~~~~~~~kL~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg  219 (396)
T 4eut_A          141 GNIMRVIGEDGQSVYKLTDFGAARELEDDE-QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATG  219 (396)
T ss_dssp             GGEEEEECTTSCEEEEECCGGGCEECCCGG-GSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHEEEeecCCCceeEEEecCCCceEccCCC-ccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHC
Confidence            58998    778889999999998764432 2234568999999998864        4466789999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCC--------------------CCCHHHHHHHHHHHHHHHhhhccCCCCCCC
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPP--------------------PVDQKVIQDILLASTISFACLQSNPKSRPT  128 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps  128 (160)
                      ..||.....   ...............++.                    ............+.+++.+||+.||++||+
T Consensus       220 ~~Pf~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s  296 (396)
T 4eut_A          220 SLPFRPFEG---PRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWG  296 (396)
T ss_dssp             SCSEECTTC---TTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCC
T ss_pred             CCCCCCCCc---ccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhcc
Confidence            999963321   112222233333222110                    001111223344678999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 040414          129 MQYVSQEFLITR  140 (160)
Q Consensus       129 ~~~~~~~~~~~~  140 (160)
                      ++++++.+...-
T Consensus       297 ~~e~l~~l~~il  308 (396)
T 4eut_A          297 FDQFFAETSDIL  308 (396)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999876653

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.85  E-value=9.5e-22  Score=133.57  Aligned_cols=129  Identities=23%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC-CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS-SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~-~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +||+++.++.+||+|||++....... .......+++.|+|||.+.+..++.++|+||+|+++|++++|..||.....  
T Consensus       163 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--  240 (309)
T 2h34_A          163 ENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQL--  240 (309)
T ss_dssp             GGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHH--
T ss_pred             HHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchH--
Confidence            59999999999999999987654332 122234578899999999888888999999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhhcCCCCC--CCHHHHHHHHHHHHHHHhhhccCCCCCC-CHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPP--VDQKVIQDILLASTISFACLQSNPKSRP-TMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-s~~~~~~~~~~~~  140 (160)
                            ......+....+.+  .....   ...+.+++.+||+.||++|| +++++++.+...-
T Consensus       241 ------~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l  295 (309)
T 2h34_A          241 ------SVMGAHINQAIPRPSTVRPGI---PVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAAL  295 (309)
T ss_dssp             ------HHHHHHHHSCCCCGGGTSTTC---CTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTC
T ss_pred             ------HHHHHHhccCCCCccccCCCC---CHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHH
Confidence                  12222222222111  01111   11246799999999999999 8999998876554

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.84  E-value=1.6e-21  Score=132.83  Aligned_cols=131  Identities=17%  Similarity=0.226  Sum_probs=84.8

Q ss_pred             CceeecCCCceEEcccccceeccCC-----CCccccccccccccCCccccc---------CCCCCCcCeeehHHHHHHHH
Q 040414            1 NNIILNSNLEAFVADFGTARLLHAD-----SSNRTLLAGTYGYIAPELAYT---------MVMTEKCDVYSFGVVTLEVL   66 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~-----~~~~~~~~~~~~~~~Pe~~~~---------~~~~~~~di~s~G~~~~~l~   66 (160)
                      +||+++ ++.+||+|||++......     ........+++.|+|||.+.+         ..++.++|+||+|+++|+++
T Consensus       159 ~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~  237 (319)
T 2y4i_B          159 KNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELH  237 (319)
T ss_dssp             TTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHH
T ss_pred             hhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHH
Confidence            599998 679999999997754321     112223457889999999864         23577899999999999999


Q ss_pred             hcCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           67 MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        67 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      +|..||...       ..............+.......   ...+.+++.+||+.||++|||++++++.+......
T Consensus       238 ~g~~p~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~  303 (319)
T 2y4i_B          238 AREWPFKTQ-------PAEAIIWQMGTGMKPNLSQIGM---GKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKR  303 (319)
T ss_dssp             HSSCSSSSC-------CHHHHHHHHHTTCCCCCCCSSC---CTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred             hCCCCCCCC-------CHHHHHHHhccCCCCCCCcCCC---CHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence            999998622       1222222222222211111111   11246799999999999999999999998776543

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.84  E-value=7.9e-22  Score=145.69  Aligned_cols=128  Identities=20%  Similarity=0.287  Sum_probs=89.1

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++........ .....+++.|+|||.+.+..++.++|+||+|+++|+|++ |..||....  
T Consensus       520 ~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~--  597 (656)
T 2j0j_A          520 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--  597 (656)
T ss_dssp             GGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC--
T ss_pred             HhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC--
Confidence            5999999999999999999865433221 122345678999999988888899999999999999996 899986221  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ........... ...+.+....   ..+.+++.+||+.||++|||++++++.+...
T Consensus       598 -----~~~~~~~i~~~-~~~~~~~~~~---~~l~~li~~~l~~dP~~RPs~~el~~~L~~i  649 (656)
T 2j0j_A          598 -----NNDVIGRIENG-ERLPMPPNCP---PTLYSLMTKCWAYDPSRRPRFTELKAQLSTI  649 (656)
T ss_dssp             -----HHHHHHHHHHT-CCCCCCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcC-CCCCCCcccc---HHHHHHHHHHcCCChhHCcCHHHHHHHHHHH
Confidence                 12222222221 2122222222   2347899999999999999999999887654

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.84  E-value=1.1e-21  Score=133.53  Aligned_cols=133  Identities=19%  Similarity=0.304  Sum_probs=90.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---------cccccccccccCCcccccCC---CCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---------RTLLAGTYGYIAPELAYTMV---MTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---------~~~~~~~~~~~~Pe~~~~~~---~~~~~di~s~G~~~~~l~~g   68 (160)
                      +||+++.++.+||+|||.+.........         .....+++.|+|||.+.+..   ++.++|+||+|+++|++++|
T Consensus       163 ~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g  242 (317)
T 2buj_A          163 TNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFG  242 (317)
T ss_dssp             GGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHS
T ss_pred             HHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhC
Confidence            5999999999999999988754321110         01234688899999987543   57789999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      ..||.......  ..    ...........+.....   ...+.+++.+||+.||.+|||++++++++......
T Consensus       243 ~~p~~~~~~~~--~~----~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~  307 (317)
T 2buj_A          243 EGPYDMVFQKG--DS----VALAVQNQLSIPQSPRH---SSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPP  307 (317)
T ss_dssp             SCTTHHHHHTT--SC----HHHHHHCC--CCCCTTS---CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCC
T ss_pred             CCChhhhhccc--ch----hhHHhhccCCCCccccC---CHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCC
Confidence            99986322111  00    11111111111111111   12357899999999999999999999999876543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.84  E-value=6.4e-22  Score=135.31  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS-   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~-   76 (160)
                      +||+++.++.+||+|||+++........   .....++..|+|||.+.+..++.++|+||+|++++++++|..|+.... 
T Consensus       174 ~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~  253 (326)
T 2w1i_A          174 RNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA  253 (326)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH
T ss_pred             ceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH
Confidence            5999999999999999999876543221   122345667999999988878889999999999999999998875221 


Q ss_pred             ----ccCCCCCch---hhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           77 ----SLSSSSDPK---IMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        77 ----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          .........   ......+......+.+....   ..+.+++.+||+.||++|||++++++.+....
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~  321 (326)
T 2w1i_A          254 EFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPDGCP---DEIYMIMTECWNNNVNQRPSFRDLALRVDQIR  321 (326)
T ss_dssp             HHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHhhccccchhhhHHHHHHHhhcCCCCCCCCccc---HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence                001111101   11122222222222222222   23578999999999999999999998876553

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.83  E-value=7.3e-22  Score=132.77  Aligned_cols=121  Identities=19%  Similarity=0.330  Sum_probs=85.7

Q ss_pred             CceeecCCCc--------eEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcC-C
Q 040414            1 NNIILNSNLE--------AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGK-H   70 (160)
Q Consensus         1 ~nill~~~~~--------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~-~   70 (160)
                      +||+++.++.        +||+|||.+......    ....+++.|+|||.+.+ ..++.++|+||+|+++|+|++|. +
T Consensus       142 ~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~  217 (289)
T 4fvq_A          142 KNILLIREEDRKTGNPPFIKLSDPGISITVLPK----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDK  217 (289)
T ss_dssp             GGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceEEEecCCcccccccceeeeccCcccccccCc----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCC
Confidence            5999988877        999999998654321    23457788999999887 56788999999999999999954 4


Q ss_pred             ccccccccCCCCCchhhHHHhhhc--CCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQ--RLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      |+...        ...........  ..+...+       ..+.+++.+||+.||++|||++++++++...-
T Consensus       218 ~~~~~--------~~~~~~~~~~~~~~~~~~~~-------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~  274 (289)
T 4fvq_A          218 PLSAL--------DSQRKLQFYEDRHQLPAPKA-------AELANLINNCMDYEPDHRPSFRAIIRDLNSLF  274 (289)
T ss_dssp             TTTTS--------CHHHHHHHHHTTCCCCCCSS-------CTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC
T ss_pred             Ccccc--------chHHHHHHhhccCCCCCCCC-------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            44311        11111122111  2222221       12467999999999999999999999987654

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.83  E-value=4.6e-22  Score=146.07  Aligned_cols=138  Identities=22%  Similarity=0.198  Sum_probs=90.8

Q ss_pred             CceeecCCCc---eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLE---AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~---~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.++.   +||+|||.+....... ......+++.|+|||.+.+..++.++|+||+|+++|++++|..||.....
T Consensus       150 ~NILl~~~g~~~~vKL~DFG~a~~~~~~~-~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~  228 (676)
T 3qa8_A          150 ENIVLQPGPQRLIHKIIDLGYAKELDQGE-LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ  228 (676)
T ss_dssp             TTEEEECCSSSCEEEECSCCCCCBTTSCC-CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH
T ss_pred             HHeEeecCCCceeEEEccccccccccccc-ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc
Confidence            5999997664   8999999998654332 23345689999999999988899999999999999999999999853210


Q ss_pred             c---CCCCCchh----hHHH------hhhcCCC--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 L---SSSSDPKI----MLID------VLDQRLP--PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~---~~~~~~~~----~~~~------~~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                      .   ........    ....      ......+  .......   ...+.+++..||..||++|||++++++|+||..-.
T Consensus       229 ~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~l---s~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          229 PVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGIL---AGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             HHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGG---HHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred             hhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhh---hHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence            0   00000000    0000      0000111  1112222   23457899999999999999999999999988643

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.80  E-value=1.1e-20  Score=127.85  Aligned_cols=118  Identities=20%  Similarity=0.218  Sum_probs=76.8

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||+++.   ++.+||+|||++.....                      ..++.++|+||+|+++|+|++|..||.....
T Consensus       146 ~Nil~~~~~~~~~~kl~Dfg~a~~~~~----------------------~~~~~~~DiwslG~il~el~tg~~pf~~~~~  203 (299)
T 3m2w_A          146 ENLLYTSKRPNAILKLTDFGFAKETTG----------------------EKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  203 (299)
T ss_dssp             GGEEESSSSTTCCEEECCCTTCEECTT----------------------CGGGGHHHHHHHHHHHHHHHHSSCSCCC---
T ss_pred             HHEEEecCCCCCcEEEecccccccccc----------------------ccCCchhhHHHHHHHHHHHHHCCCCCCCCcc
Confidence            5999997   78899999999875321                      2245678999999999999999999863322


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCH-HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQ-KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                      ........   ........  ..+. ........+.+++.+||+.||++|||++++++|+|+.......
T Consensus       204 ~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~~~~  267 (299)
T 3m2w_A          204 LAISPGMK---TRIRMGQY--EFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVP  267 (299)
T ss_dssp             ----CCSC---CSSCTTCC--SSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGGGSC
T ss_pred             hhhhHHHH---HHHhhccc--cCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccccCC
Confidence            11000000   00000000  1111 0111223457899999999999999999999999998755433

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.79  E-value=4.5e-20  Score=127.93  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=83.0

Q ss_pred             CceeecC-----------CCceEEcccccceeccCC--CCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh
Q 040414            1 NNIILNS-----------NLEAFVADFGTARLLHAD--SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus         1 ~nill~~-----------~~~~kl~d~g~~~~~~~~--~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~   67 (160)
                      +|||++.           ++.+||+|||+++.+...  ........||+.|+|||++.+..++.++|+||+|+++|+|++
T Consensus       201 ~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ellt  280 (365)
T 3e7e_A          201 DNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLF  280 (365)
T ss_dssp             GGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHH
T ss_pred             HHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHh
Confidence            5999988           899999999999765422  222334568999999999998889999999999999999999


Q ss_pred             cCCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-HHHHHH
Q 040414           68 GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-MQYVSQ  134 (160)
Q Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-~~~~~~  134 (160)
                      |..||........      .    ....... ...     ...+.+++..||+.+|.+|++ ++++.+
T Consensus       281 g~~pf~~~~~~~~------~----~~~~~~~-~~~-----~~~~~~~~~~~l~~~p~~r~~~~~~l~~  332 (365)
T 3e7e_A          281 GTYMKVKNEGGEC------K----PEGLFRR-LPH-----LDMWNEFFHVMLNIPDCHHLPSLDLLRQ  332 (365)
T ss_dssp             SSCCCEEEETTEE------E----ECSCCTT-CSS-----HHHHHHHHHHHHCCCCTTCCCCHHHHHH
T ss_pred             CCCccccCCCCce------e----echhccc-cCc-----HHHHHHHHHHHcCCCCCCcchHHHHHHH
Confidence            9999853221100      0    0011111 111     122467888999999999955 555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.76  E-value=4e-19  Score=132.01  Aligned_cols=115  Identities=22%  Similarity=0.256  Sum_probs=84.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.+ .+||+|||+++.....    ....||+.|++||.+.+.. +.++||||+|+++++|++|.+||......  
T Consensus       211 ~NIll~~~-~~kl~DFG~a~~~~~~----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~--  282 (681)
T 2pzi_A          211 ENIMLTEE-QLKLIDLGAVSRINSF----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVD--  282 (681)
T ss_dssp             GGEEECSS-CEEECCCTTCEETTCC----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECS--
T ss_pred             HHeEEeCC-cEEEEecccchhcccC----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCcccccc--
Confidence            59999875 8999999999875433    3356899999999987654 77899999999999999999887632110  


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                                    ..+..  .........+.+++.+||+.||++||+..+.+.+.+..
T Consensus       283 --------------~~~~~--~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          283 --------------GLPED--DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             --------------SCCTT--CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             --------------ccccc--ccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence                          00111  11112223467899999999999999877777776654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.72  E-value=2.7e-18  Score=117.75  Aligned_cols=122  Identities=14%  Similarity=0.050  Sum_probs=85.0

Q ss_pred             CceeecCCC--------------------ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHH
Q 040414            1 NNIILNSNL--------------------EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV   60 (160)
Q Consensus         1 ~nill~~~~--------------------~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~   60 (160)
                      +|||++.++                    .+||+|||+++.....     ...||+.|+|||++.+.. +.++||||+++
T Consensus       191 ~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-----~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~  264 (336)
T 2vuw_A          191 GNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-----IVVFCDVSMDEDLFTGDG-DYQFDIYRLMK  264 (336)
T ss_dssp             GGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----EEECCCCTTCSGGGCCCS-SHHHHHHHHHH
T ss_pred             HHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----cEEEeecccChhhhcCCC-ccceehhhhhC
Confidence            599999887                    8999999999876432     346899999999998765 77899999876


Q ss_pred             H-HHHHHhcCCccccccccCCCCCchhhHHHhhhc-C-CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHH-HHH
Q 040414           61 V-TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQ-R-LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVS-QEF  136 (160)
Q Consensus        61 ~-~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~-~~~  136 (160)
                      + .++++.|..||......      .......... . ...............+.+|+.+||+.|     |+++++ +|+
T Consensus       265 ~~~~~~~~g~~p~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp  333 (336)
T 2vuw_A          265 KENNNRWGEYHPYSNVLWL------HYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHS  333 (336)
T ss_dssp             HHHTTCTTSCCTHHHHHHH------HHHHHHHHHTCCCSSCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCG
T ss_pred             CCCcccccccCCCcchhhh------hHHHHhhhhhhccCcccchhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCC
Confidence            6 77788898988521100      0011111111 1 111222333445556789999999986     999999 999


Q ss_pred             hhh
Q 040414          137 LIT  139 (160)
Q Consensus       137 ~~~  139 (160)
                      |+.
T Consensus       334 ~f~  336 (336)
T 2vuw_A          334 LFK  336 (336)
T ss_dssp             GGC
T ss_pred             CcC
Confidence            984

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.53  E-value=6.1e-15  Score=99.14  Aligned_cols=108  Identities=9%  Similarity=0.020  Sum_probs=68.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +||+++.+|.+||++++                    |++|       ++.++|+||+|+++|+|++|..||........
T Consensus       158 ~NIll~~~g~~kl~~~~--------------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~  210 (286)
T 3uqc_A          158 SRVRVSIDGDVVLAYPA--------------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSG  210 (286)
T ss_dssp             GGEEEETTSCEEECSCC--------------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCC
T ss_pred             ccEEEcCCCCEEEEecc--------------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchh
Confidence            58999999999987432                    2222       46789999999999999999999974432110


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ..    ............+ ..........+.+++.+||+.||++| |++++++.+.....
T Consensus       211 ~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~  265 (286)
T 3uqc_A          211 LA----PAERDTAGQPIEP-ADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATA  265 (286)
T ss_dssp             SE----ECCBCTTSCBCCH-HHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC
T ss_pred             hH----HHHHHhccCCCCh-hhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhc
Confidence            00    0000000100000 00000111235789999999999999 99999999887654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.22  E-value=1.2e-13  Score=100.87  Aligned_cols=68  Identities=19%  Similarity=0.059  Sum_probs=40.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGK   69 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~   69 (160)
                      +|||++.+|.+||+|||+++..........+.+||+.|++||.+.+. ....+|+|++|++.+++.++.
T Consensus       368 eNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~  435 (569)
T 4azs_A          368 WNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPW  435 (569)
T ss_dssp             GGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCCCTTH
T ss_pred             HhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-CCCcccccccccchhhhcccc
Confidence            59999999999999999998766555555567899999999998764 556789999999877665443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=98.32  E-value=2.2e-08  Score=72.83  Aligned_cols=70  Identities=13%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-------cccccccccccCCccccc--CCCCCCcCeeehHHHHHHHHhcCCc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYT--MVMTEKCDVYSFGVVTLEVLMGKHP   71 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-------~~~~~~~~~~~~Pe~~~~--~~~~~~~di~s~G~~~~~l~~g~~~   71 (160)
                      +|||++.  .+||+|||+++........       .....||+.|++||++..  ..++..+|+|+..+-..+.+.++.+
T Consensus       460 ~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~r  537 (540)
T 3en9_A          460 SNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRAR  537 (540)
T ss_dssp             TSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSC
T ss_pred             HHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence            6999998  8999999999976543211       134678999999999976  4466678999988888777766655


Q ss_pred             c
Q 040414           72 R   72 (160)
Q Consensus        72 ~   72 (160)
                      |
T Consensus       538 Y  538 (540)
T 3en9_A          538 Y  538 (540)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=94.93  E-value=0.015  Score=38.78  Aligned_cols=20  Identities=15%  Similarity=0.331  Sum_probs=18.2

Q ss_pred             CceeecCCCceEEccccccee
Q 040414            1 NNIILNSNLEAFVADFGTARL   21 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~   21 (160)
                      +|||++ ++.+||+|||+++.
T Consensus       222 ~NILl~-~~~vkl~DFG~a~~  241 (282)
T 1zar_A          222 YNVLVS-EEGIWIIDFPQSVE  241 (282)
T ss_dssp             TSEEEE-TTEEEECCCTTCEE
T ss_pred             HHEEEE-CCcEEEEECCCCeE
Confidence            599999 99999999999874

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=91.71  E-value=0.12  Score=33.88  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=17.4

Q ss_pred             CceeecCCCceEEcccccceec
Q 040414            1 NNIILNSNLEAFVADFGTARLL   22 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~   22 (160)
                      +|||++.  .++|+|||++...
T Consensus       200 ~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          200 YNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             TSEEESS--SEEECCCTTCEET
T ss_pred             HHEEEcC--cEEEEECcccccC
Confidence            5999998  8999999998754

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=80.60  E-value=1.9  Score=27.84  Aligned_cols=30  Identities=23%  Similarity=0.281  Sum_probs=18.0

Q ss_pred             cccCCcccccCCCCCCcCeeehHHHHHHHHh
Q 040414           37 GYIAPELAYTMVMTEKCDVYSFGVVTLEVLM   67 (160)
Q Consensus        37 ~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~   67 (160)
                      .+.+||... ...+.+.-|||+|+++|.-+-
T Consensus       102 ~~~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          102 PPVAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             -----CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             CCCChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence            356777653 223456679999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	4e-24
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	5e-22
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	3e-21
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-21
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-20
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-20
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-20
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	9e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	1e-19
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-19
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-19
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-19
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-19
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	3e-19
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	8e-19
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	9e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-18
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-18
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-18
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-18
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	2e-18
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-18
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-18
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-17
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-17
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-17
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-15
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	3e-15
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	4e-15
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-15
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	1e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-14
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-14
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-14
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-14
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	6e-14
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	9e-14
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-14
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-13
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	7e-13
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-12
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-12
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-12
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-12
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	7e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-10
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-09
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	4e-09
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-08
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-07
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	8e-07
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	8e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-06

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 4e-24
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTM---VMTEKCDV 55
           NNI L+ +L   + DFG A +    S +     L+G+  ++APE+         + + DV
Sbjct: 133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDV 192

Query: 56  YSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTIS 115
           Y+FG+V  E++ G+ P       S+ ++   ++  V    L P + +           + 
Sbjct: 193 YAFGIVLYELMTGQLP------YSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLM 246

Query: 116 FACLQSNPKSRPTMQYVSQEF-LITRKTP 143
             CL+     RP    +     L+ R  P
Sbjct: 247 AECLKKKRDERPLFPQILASIELLARSLP 275

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (214), Expect = 5e-22
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 15/131 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N+ L+      + DFG AR+L+ D+S      GT  Y++PE    M   EK D++S G +
Sbjct: 144 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 203

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ--KVIQDILLASTISFACL 119
             E+     P         +   K +   + + +      +    + +I+         L
Sbjct: 204 LYELCALMPPFT-------AFSQKELAGKIREGKFRRIPYRYSDELNEIIT------RML 250

Query: 120 QSNPKSRPTMQ 130
                 RP+++
Sbjct: 251 NLKDYHRPSVE 261

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 2e-21
 Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 14/130 (10%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++L S  E  +ADFG +   HA SS RT L GT  Y+ PE+    +  EK D++S GV
Sbjct: 135 ENLLLGSAGELKIADFGWSV--HAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 192

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  E L+GK P +     +++       I  ++   P  V +   +D++         L+
Sbjct: 193 LCYEFLVGKPPFE-----ANTYQETYKRISRVEFTFPDFVTEGA-RDLIS------RLLK 240

Query: 121 SNPKSRPTMQ 130
            NP  RP ++
Sbjct: 241 HNPSQRPMLR 250

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (210), Expect = 3e-21
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 12/130 (9%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N  I        + D G A L  A  +    + GT  ++APE+ Y     E  DVY+FG+
Sbjct: 144 NIFITGPTGSVKIGDLGLATLKRASFAKA--VIGTPEFMAPEM-YEEKYDESVDVYAFGM 200

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
             LE+   ++P       S   +   +   V     P   D+  I +      I   C++
Sbjct: 201 CMLEMATSEYP------YSECQNAAQIYRRVTSGVKPASFDKVAIPE---VKEIIEGCIR 251

Query: 121 SNPKSRPTMQ 130
            N   R +++
Sbjct: 252 QNKDERYSIK 261

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 4e-21
 Identities = 31/138 (22%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA---GTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++NSNL   V+DFG +R+L  D       +       + APE       T   DV+SF
Sbjct: 140 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 199

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G+V  EV+                     ++  ++     P        I     +   C
Sbjct: 200 GIVMWEVMTYGERPY-------WELSNHEVMKAINDGFRLPTPMDCPSAIY---QLMMQC 249

Query: 119 LQSNPKSRPTMQYVSQEF 136
            Q     RP    +    
Sbjct: 250 WQQERARRPKFADIVSIL 267

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (205), Expect = 2e-20
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHAD-SSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI++  NL   VADFG ARL+  +  + R        + APE A     T K DV+SFG+
Sbjct: 143 NILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGI 202

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  E+                      ++D +++    P   +  + +     +   C +
Sbjct: 203 LLTELTTKGRVPY-------PGMVNREVLDQVERGYRMPCPPECPESLH---DLMCQCWR 252

Query: 121 SNPKSRPTMQYVSQEF 136
             P+ RPT +Y+    
Sbjct: 253 KEPEERPTFEYLQAFL 268

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (204), Expect = 2e-20
 Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           NI+++  L   +ADFG ARL+  +    R        + APE       T K DV+SFG+
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPP--VDQKVIQDILLASTISFAC 118
           +  E++               ++P+++       R+  P    +++ Q + L       C
Sbjct: 199 LLTEIVTHGRIPY-----PGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRL-------C 246

Query: 119 LQSNPKSRPTMQYVSQEF 136
            +  P+ RPT  Y+    
Sbjct: 247 WKERPEDRPTFDYLRSVL 264

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (201), Expect = 8e-20
 Identities = 34/152 (22%), Positives = 58/152 (38%), Gaps = 16/152 (10%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADS----SNRTLLAGTYGYIAPELAYTMVMTEKCDVY 56
            N +L+      VADFG AR ++        N+T       ++A E   T   T K DV+
Sbjct: 159 RNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVW 218

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTIS 115
           SFGV+  E++    P          +   I +  +  +RL  P      + +++L     
Sbjct: 219 SFGVLLWELMTRGAPPY-----PDVNTFDITVYLLQGRRLLQPEYCPDPLYEVML----- 268

Query: 116 FACLQSNPKSRPTMQYVSQEFLITRKTPLVKH 147
             C     + RP+   +         T + +H
Sbjct: 269 -KCWHPKAEMRPSFSELVSRISAIFSTFIGEH 299

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 9e-20
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 18/135 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTM-VMTEKCDVYSF 58
           N++L+      ++DFG A +   ++  R L  + GT  Y+APEL        E  DV+S 
Sbjct: 133 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 192

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTIS 115
           G+V   +L G+ P D        SD      D  +++      +K+      +L      
Sbjct: 193 GIVLTAMLAGELPWD------QPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLH----- 241

Query: 116 FACLQSNPKSRPTMQ 130
              L  NP +R T+ 
Sbjct: 242 -KILVENPSARITIP 255

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.7 bits (198), Expect = 1e-19
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 16/139 (11%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           N ++  N+   +ADFG +R +++    +     A    ++ PE  +    T + DV+++G
Sbjct: 170 NCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYG 229

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ--KVIQDILLASTISFA 117
           VV  E+                   + ++  V D  +    +     + +++        
Sbjct: 230 VVLWEIFSYGLQPY------YGMAHEEVIYYVRDGNILACPENCPLELYNLMR------L 277

Query: 118 CLQSNPKSRPTMQYVSQEF 136
           C    P  RP+   + +  
Sbjct: 278 CWSKLPADRPSFCSIHRIL 296

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.5 bits (198), Expect = 2e-19
 Identities = 34/152 (22%), Positives = 60/152 (39%), Gaps = 16/152 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N ++  N    VADFG +RL+  D+            + APE       + K DV++FGV
Sbjct: 145 NCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 204

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  E+            LS        + ++L++       +   + +     +  AC Q
Sbjct: 205 LLWEIATYGMSPYPGIDLSQ-------VYELLEKDYRMERPEGCPEKVY---ELMRACWQ 254

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQD 152
            NP  RP+   + Q F       + + ++I D
Sbjct: 255 WNPSDRPSFAEIHQAF-----ETMFQESSISD 281

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.6 bits (198), Expect = 2e-19
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 19/142 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA-----GTYGYIAPELAYTMVMTEKCDVY 56
           NI++NSNL   V+DFG +R L  D+S+ T  +         + APE       T   DV+
Sbjct: 158 NILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVW 217

Query: 57  SFGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ-KVIQDILLASTI 114
           S+G+V  EV+  G+ P          ++  ++     D RLPPP+D    +  ++L    
Sbjct: 218 SYGIVMWEVMSYGERP------YWDMTNQDVINAIEQDYRLPPPMDCPSALHQLML---- 267

Query: 115 SFACLQSNPKSRPTMQYVSQEF 136
              C Q +   RP    +    
Sbjct: 268 --DCWQKDRNHRPKFGQIVNTL 287

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (198), Expect = 2e-19
 Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 21/156 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI+L  +    + DFG    +  + S R+ + GT  ++APE+        K D++S G++
Sbjct: 146 NILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIM 205

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISFAC 118
            +E++ G+ P        + +  + + +   +        +K+    +D L        C
Sbjct: 206 AIEMIEGEPP------YLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLN------RC 253

Query: 119 LQSNPKSRPTMQYVSQ-EFLITRK-----TPLVKHA 148
           L  + + R + + + Q +FL   K     TPL+  A
Sbjct: 254 LDMDVEKRGSAKELLQHQFLKIAKPLSSLTPLIAAA 289

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.8 bits (196), Expect = 3e-19
 Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 17/139 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           N++L +   A ++DFG ++ L AD S    R+       + APE       + + DV+S+
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 198

Query: 59  GVVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISF 116
           GV   E L  G+ P            P++M      +R+  P +    +  ++       
Sbjct: 199 GVTMWEALSYGQKPYK------KMKGPEVMAFIEQGKRMECPPECPPELYALMS------ 246

Query: 117 ACLQSNPKSRPTMQYVSQE 135
            C     + RP    V Q 
Sbjct: 247 DCWIYKWEDRPDFLTVEQR 265

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 3e-19
 Identities = 36/162 (22%), Positives = 64/162 (39%), Gaps = 36/162 (22%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           NI++NS  E  + DFG +  L    +N     GT  Y++PE       + + D++S G+ 
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSF--VGTRSYMSPERLQGTHYSVQSDIWSMGLS 192

Query: 62  TLEVLMGKHP-------------------------------RDLLSSLSSSSDPKIMLID 90
            +E+ +G++P                                  LSS    S P + + +
Sbjct: 193 LVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFE 252

Query: 91  VLDQRL--PPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ 130
           +LD  +  PPP     +  +     ++  CL  NP  R  ++
Sbjct: 253 LLDYIVNEPPPKLPSGVFSLEFQDFVN-KCLIKNPAERADLK 293

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (192), Expect = 8e-19
 Identities = 28/139 (20%), Positives = 55/139 (39%), Gaps = 13/139 (9%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
            N ++N      V+DFG +R +  D    ++       +  PE+      + K D+++FG
Sbjct: 129 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 188

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           V+  E+  +GK P +  ++            + + Q L         + +    TI ++C
Sbjct: 189 VLMWEIYSLGKMPYERFTNSE--------TAEHIAQGLRLYRPHLASEKVY---TIMYSC 237

Query: 119 LQSNPKSRPTMQYVSQEFL 137
                  RPT + +    L
Sbjct: 238 WHEKADERPTFKILLSNIL 256

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 78.9 bits (194), Expect = 9e-19
 Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 26/169 (15%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM---TEKCDVYS 57
            NI+L+      + DFG+A ++   +S      GT  ++APE+   M       K DV+S
Sbjct: 144 GNILLSEPGLVKLGDFGSASIMAPANS----FVGTPYWMAPEVILAMDEGQYDGKVDVWS 199

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTI 114
            G+  +E+   K P         + +    L  +     P           ++ +     
Sbjct: 200 LGITCIELAERKPPLF-------NMNAMSALYHIAQNESPALQSGHWSEYFRNFVD---- 248

Query: 115 SFACLQSNPKSRPTMQYVSQ-EFLITRKTPLVKHAAIQDI--SISQLRN 160
             +CLQ  P+ RPT + + +  F++  + P V    IQ    ++ +L N
Sbjct: 249 --SCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRELDN 295

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 1e-18
 Identities = 33/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI+L+ +    +ADFG  +      +      GT  YIAPE+          D +SFGV
Sbjct: 132 DNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGV 191

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  E+L+G+ P           + ++     +D    P   +K  +D+L+          
Sbjct: 192 LLYEMLIGQSPFH------GQDEEELFHSIRMDNPFYPRWLEKEAKDLLV------KLFV 239

Query: 121 SNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
             P+ R  ++    +          +H   ++I+  +L  
Sbjct: 240 REPEKRLGVR---GDIR--------QHPLFREINWEELER 268

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-18
 Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYS 57
            N++L +   A ++DFG ++ L AD +    +T       + APE       + K DV+S
Sbjct: 136 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWS 195

Query: 58  FGVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTIS 115
           FGV+  E    G+ P             ++  +    +R+  P    + + D++      
Sbjct: 196 FGVLMWEAFSYGQKP------YRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMN----- 244

Query: 116 FACLQSNPKSRPTMQYVSQE 135
             C   + ++RP    V   
Sbjct: 245 -LCWTYDVENRPGFAAVELR 263

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (192), Expect = 1e-18
 Identities = 32/145 (22%), Positives = 56/145 (38%), Gaps = 14/145 (9%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           N+++ +     + DFG A+LL A+              ++A E     + T + DV+S+G
Sbjct: 141 NVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYG 200

Query: 60  VVTLEVL-MGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           V   E++  G  P D          P   +  +L++    P       D+     I   C
Sbjct: 201 VTVWELMTFGSKPYD--------GIPASEISSILEKGERLPQPPICTIDVY---MIMVKC 249

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTP 143
              +  SRP  + +  EF    + P
Sbjct: 250 WMIDADSRPKFRELIIEFSKMARDP 274

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 2e-18
 Identities = 29/138 (21%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL-LAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N ++  N    V+DFG  R +  D    +        + +PE+      + K DV+SFGV
Sbjct: 131 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGV 190

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPP--VDQKVIQDILLASTISFAC 118
           +  EV              + S+ +++       RL  P      V Q +         C
Sbjct: 191 LMWEVFSEGKI-----PYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNH-------C 238

Query: 119 LQSNPKSRPTMQYVSQEF 136
            +  P+ RP    + ++ 
Sbjct: 239 WKERPEDRPAFSRLLRQL 256

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (191), Expect = 2e-18
 Identities = 29/138 (21%), Positives = 49/138 (35%), Gaps = 22/138 (15%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-----TEKCDVY 56
           NI+   + +  +ADFG +         R    GT  ++APE+             K DV+
Sbjct: 140 NILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVW 199

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVI----QDILLAS 112
           S G+  +E+   + P           +P  +L+ +     P            +D L   
Sbjct: 200 SLGITLIEMAEIEPPHH-------ELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLK-- 250

Query: 113 TISFACLQSNPKSRPTMQ 130
                CL+ N  +R T  
Sbjct: 251 ----KCLEKNVDARWTTS 264

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (190), Expect = 3e-18
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 20/155 (12%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMVM------TE 51
           NI++  N    +AD G A    + +           GT  Y+APE+    +        +
Sbjct: 138 NILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK 197

Query: 52  KCDVYSFGVVTLEVLMGKHPRDLLSSLS--------SSSDPKIMLIDVLDQRLPPPVDQK 103
           + D+Y+ G+V  E+        +             S    + M   V +Q+L P +  +
Sbjct: 198 RADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR 257

Query: 104 VIQDILLASTISFA--CLQSNPKSRPTMQYVSQEF 136
                 L         C  +N  +R T   + +  
Sbjct: 258 WQSCEALRVMAKIMRECWYANGAARLTALRIKKTL 292

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (189), Expect = 3e-18
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 22/162 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           NI+LN ++   + DFGTA++L  +S         GT  Y++PEL       +  D+++ G
Sbjct: 138 NILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALG 197

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFAC 118
            +  +++ G  P         + +  ++   ++      P       +D++         
Sbjct: 198 CIIYQLVAGLPPFR-------AGNEYLIFQKIIKLEYDFPEKFFPKARDLVE------KL 244

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
           L  +   R   + +     +        H   + ++   L  
Sbjct: 245 LVLDATKRLGCEEMEGYGPL------KAHPFFESVTWENLHQ 280

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 3e-18
 Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 11/135 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSFG 59
           N+++       + DFG AR + +DS+            ++APE  +  + T K DV+S+G
Sbjct: 194 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 253

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           ++  E+                         ++             ++I     I  +C 
Sbjct: 254 ILLWEIFSLGVN------PYPGIPVDANFYKLIQNGFKMDQPFYATEEIY---IIMQSCW 304

Query: 120 QSNPKSRPTMQYVSQ 134
             + + RP+   ++ 
Sbjct: 305 AFDSRKRPSFPNLTS 319

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 13/137 (9%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI++  N  A +ADFG +R        +T+      ++A E     V T   DV+S+GV
Sbjct: 156 RNILVGENYVAKIADFGLSRG-QEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGV 214

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFACL 119
           +  E++               +  ++        RL  P++    + D++        C 
Sbjct: 215 LLWEIVSLGGT-----PYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMR------QCW 263

Query: 120 QSNPKSRPTMQYVSQEF 136
           +  P  RP+   +    
Sbjct: 264 REKPYERPSFAQILVSL 280

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.7 bits (183), Expect = 2e-17
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N++++ +  A V+DFG  +     SS +        + APE       + K DV+SFG+
Sbjct: 132 RNVLVSEDNVAKVSDFGLTKEA---SSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGI 188

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  E+                  P   ++  +++             +     +   C  
Sbjct: 189 LLWEIYSFGRV-------PYPRIPLKDVVPRVEKGYKMDAPDGCPPAVY---EVMKNCWH 238

Query: 121 SNPKSRPTMQYVSQEF 136
            +   RP+   + ++ 
Sbjct: 239 LDAAMRPSFLQLREQL 254

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 6e-17
 Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+L       + DFG AR +  DS+   +        ++APE  +  V T + DV+S+
Sbjct: 174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSY 233

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G+   E+                         ++ +       +    ++     I   C
Sbjct: 234 GIFLWELFSLGSSPY------PGMPVDSKFYKMIKEGFRMLSPEHAPAEMY---DIMKTC 284

Query: 119 LQSNPKSRPTMQYVSQEF 136
             ++P  RPT + + Q  
Sbjct: 285 WDADPLKRPTFKQIVQLI 302

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 29/140 (20%), Positives = 50/140 (35%), Gaps = 14/140 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           N++L +     + DFG  R L  +  +   +      + + APE   T   +   D + F
Sbjct: 141 NLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMF 200

Query: 59  GVVTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFA 117
           GV   E+   G+ P           +   +L  +  +    P  +   QDI     +   
Sbjct: 201 GVTLWEMFTYGQEPWI-------GLNGSQILHKIDKEGERLPRPEDCPQDIY---NVMVQ 250

Query: 118 CLQSNPKSRPTMQYVSQEFL 137
           C    P+ RPT   +    L
Sbjct: 251 CWAHKPEDRPTFVALRDFLL 270

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 19/137 (13%)

Query: 1   NNIILNSN----LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVY 56
            NI+L           + DFG A  +   +     + GT  ++APE+     +  + D++
Sbjct: 142 ENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE-FKNIFGTPEFVAPEIVNYEPLGLEADMW 200

Query: 57  SFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLAST 113
           S GV+T  +L G  P         +    +  +  ++               +D +    
Sbjct: 201 SIGVITYILLSGASPFL-----GDTKQETLANVSAVNYEFEDEYFSNTSALAKDFIR--- 252

Query: 114 ISFACLQSNPKSRPTMQ 130
                L  +PK R T+Q
Sbjct: 253 ---RLLVKDPKKRMTIQ 266

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 69.1 bits (168), Expect = 3e-15
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 16/147 (10%)

Query: 2   NIILNSNLE-----AFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVM 49
           N ++           +V DFG  +      +        +  L+GT  Y++         
Sbjct: 131 NFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQ 190

Query: 50  TEKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDIL 109
           + + D+ + G V +  L G  P   L   ++++  K   I    Q  P         +  
Sbjct: 191 SRRDDLEALGHVFMYFLRGSLPWQGLK--AATNKQKYERIGEKKQSTPLRELCAGFPEEF 248

Query: 110 LASTISFACLQSNPKSRPTMQYVSQEF 136
                          + P   Y+   F
Sbjct: 249 --YKYMHYARNLAFDATPDYDYLQGLF 273

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 15/138 (10%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N++++SN    + DFG +R +   +  + +       ++APE       T   DV+ FGV
Sbjct: 138 NVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGV 197

Query: 61  VTLEVLM-GKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFAC 118
              E+LM G  P           +  ++      +RLP P +    +  ++        C
Sbjct: 198 CMWEILMHGVKPFQ------GVKNNDVIGRIENGERLPMPPNCPPTLYSLMT------KC 245

Query: 119 LQSNPKSRPTMQYVSQEF 136
              +P  RP    +  + 
Sbjct: 246 WAYDPSRRPRFTELKAQL 263

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 4e-15
 Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 11/137 (8%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+L+      + DFG AR ++ D     +        ++APE  +  V T + DV+SF
Sbjct: 163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 222

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           GV+  E+            +    +    L +    R P     ++ Q +L        C
Sbjct: 223 GVLLWEIFSLGASPY--PGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLD-------C 273

Query: 119 LQSNPKSRPTMQYVSQE 135
               P  RPT   + + 
Sbjct: 274 WHGEPSQRPTFSELVEH 290

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 7e-15
 Identities = 33/163 (20%), Positives = 61/163 (37%), Gaps = 17/163 (10%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
               L+ + +  ++DFG +++    S   T   GT GY+APE+      ++  D +S GV
Sbjct: 139 LYYSLDEDSKIMISDFGLSKMEDPGSVLSTA-CGTPGYVAPEVLAQKPYSKAVDCWSIGV 197

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTISFA 117
           +   +L G  P         +       I   +     P    +    +D +        
Sbjct: 198 IAYILLCGYPPFY-----DENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIR------H 246

Query: 118 CLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
            ++ +P+ R T +   Q   I   T L K+  I      Q++ 
Sbjct: 247 LMEKDPEKRFTCEQALQHPWIAGDTALDKN--IHQSVSEQIKK 287

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (165), Expect = 8e-15
 Identities = 36/161 (22%), Positives = 62/161 (38%), Gaps = 24/161 (14%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI+L+ N    + DFG A+ +         L GT  YIAPE+  T    +  D +SFG+
Sbjct: 133 ENILLDKNGHIKITDFGFAKYVP---DVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGI 189

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFACL 119
           +  E+L G  P          S+       +L+  L  PP   + ++D+L         +
Sbjct: 190 LIYEMLAGYTPFY-------DSNTMKTYEKILNAELRFPPFFNEDVKDLLS------RLI 236

Query: 120 QSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
             +   R        E +         H   +++   +L +
Sbjct: 237 TRDLSQRLGNLQNGTEDVK-------NHPWFKEVVWEKLLS 270

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (165), Expect = 1e-14
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 11/155 (7%)

Query: 1   NNIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NII  +   + +   +FG AR L    + R L      Y APE+    V++   D++S 
Sbjct: 131 ENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLL-FTAPEYYAPEVHQHDVVSTATDMWSL 189

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G +   +L G +P         +   + ++ ++++       +      I     +    
Sbjct: 190 GTLVYVLLSGINPFL-------AETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVD-RL 241

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDI 153
           L    KSR T     Q   + +K   V    I+ +
Sbjct: 242 LVKERKSRMTASEALQHPWLKQKIERVSTKVIRTL 276

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 1e-14
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 26/152 (17%)

Query: 1   NNIILNS---NLEAFVADFGTARLLHADSSN-------RTLLAGTYGYIAPELAYTMVMT 50
           +N ++         ++ DFG A+      ++          L GT  Y +      +  +
Sbjct: 132 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQS 191

Query: 51  EKCDVYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ------KV 104
            + D+ S G V +   +G  P   L     ++  +     + ++++  P++         
Sbjct: 192 RRDDLESLGYVLMYFNLGSLPWQGL----KAATKRQKYERISEKKMSTPIEVLCKGYPSE 247

Query: 105 IQDILLASTISFACLQSNPKSRPTMQYVSQEF 136
               L        C       +P   Y+ Q F
Sbjct: 248 FATYLN------FCRSLRFDDKPDYSYLRQLF 273

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (163), Expect = 1e-14
 Identities = 30/131 (22%), Positives = 48/131 (36%), Gaps = 21/131 (16%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFG 59
           N +I  +  E  + DFG+  LL    +  T   GT  Y  PE + Y         V+S G
Sbjct: 140 NILIDLNRGELKLIDFGSGALLK--DTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLG 197

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           ++  +++ G  P +         +  I       QR+         Q ++        CL
Sbjct: 198 ILLYDMVCGDIPFE-------HDEEIIRGQVFFRQRVSSEC-----QHLIR------WCL 239

Query: 120 QSNPKSRPTMQ 130
              P  RPT +
Sbjct: 240 ALRPSDRPTFE 250

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 1   NNIILNS--NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+  +  + E  + DFG    L    S +    GT  + APE+A    +    D++S 
Sbjct: 153 ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVT-TGTAEFAAPEVAEGKPVGYYTDMWSV 211

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           GV++  +L G  P         + D  +  +   D  +       + +D      I    
Sbjct: 212 GVLSYILLSGLSPFG-----GENDDETLRNVKSCDWNMDDSAFSGISED--GKDFIR-KL 263

Query: 119 LQSNPKSRPTMQ 130
           L ++P +R T+ 
Sbjct: 264 LLADPNTRMTIH 275

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 2e-14
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 17/147 (11%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFG 59
           NN++L+ N    +ADFG A+   + +   T    T  Y APEL +   M     D+++ G
Sbjct: 129 NNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVG 188

Query: 60  VVTLEVLMGKHP--------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVI 105
            +  E+L+                    L +           L D +  +  P +    I
Sbjct: 189 CILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHI 248

Query: 106 QDILLASTISF--ACLQSNPKSRPTMQ 130
                   +         NP +R T  
Sbjct: 249 FSAAGDDLLDLIQGLFLFNPCARITAT 275

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 66.2 bits (161), Expect = 2e-14
 Identities = 28/139 (20%), Positives = 54/139 (38%), Gaps = 21/139 (15%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM------TEKCD 54
            NI+L+ ++   + DFG +  L      R +  GT  Y+APE+    +        ++ D
Sbjct: 139 ENILLDDDMNIKLTDFGFSCQLDPGEKLREV-CGTPSYLAPEIIECSMNDNHPGYGKEVD 197

Query: 55  VYSFGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLA 111
           ++S GV+   +L G  P              + +I   + +   P        ++D++  
Sbjct: 198 MWSTGVIMYTLLAGSPPFW-----HRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVS- 251

Query: 112 STISFACLQSNPKSRPTMQ 130
                  L   P+ R T +
Sbjct: 252 -----RFLVVQPQKRYTAE 265

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 5e-14
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 16/145 (11%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            NI++ S+ +  +ADFG AR+     +  ++   T  Y APE+          D++S G 
Sbjct: 145 QNILVTSSGQIKLADFGLARIYSFQMALTSV-VVTLWYRAPEVLLQSSYATPVDLWSVGC 203

Query: 61  VTLEVLMGKHP-------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQD 107
           +  E+   K                D++        P+ + +             +    
Sbjct: 204 IFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT 263

Query: 108 ILLASTISF--ACLQSNPKSRPTMQ 130
            +          CL  NP  R +  
Sbjct: 264 DIDELGKDLLLKCLTFNPAKRISAY 288

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 6e-14
 Identities = 30/161 (18%), Positives = 59/161 (36%), Gaps = 23/161 (14%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++L+ +    + DFG  +   +D +      GT  Y+APE+          D +  GVV
Sbjct: 135 NLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVV 194

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVD-QKVIQDILLASTISFACLQ 120
             E++ G+ P         + D + +   +L + +  P       + +L         L+
Sbjct: 195 MYEMMCGRLPFY-------NQDHERLFELILMEEIRFPRTLSPEAKSLLA------GLLK 241

Query: 121 SNPKSRPTMQYVS-QEFLITRKTPLVKHAAIQDISISQLRN 160
            +PK R        +E +        +H     I+   +  
Sbjct: 242 KDPKQRLGGGPSDAKEVM--------EHRFFLSINWQDVVQ 274

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 9e-14
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLA--GTYGYIAPELAYTMVMTEKCDVYSFG 59
           N+++  +    +ADFG AR +H     +          ++APE  +  + T + DV+SFG
Sbjct: 165 NVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFG 224

Query: 60  VVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACL 119
           V+  E+                  P   L  +L +            ++     +   C 
Sbjct: 225 VLLWEIFTLGGSPY-------PGVPVEELFKLLKEGHRMDKPSNCTNELY---MMMRDCW 274

Query: 120 QSNPKSRPTMQYVSQEF 136
            + P  RPT + + ++ 
Sbjct: 275 HAVPSQRPTFKQLVEDL 291

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.8 bits (157), Expect = 9e-14
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 12/140 (8%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL---LAGTYGYIAPELAYTMVMTEKCDVYSF 58
           NI++++     V DFG AR +    ++ T    + GT  Y++PE A    +  + DVYS 
Sbjct: 141 NIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSL 200

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           G V  EVL G+ P       +  S   +    V +  +PP    + +   L A  +    
Sbjct: 201 GCVLYEVLTGEPP------FTGDSPVSVAYQHVREDPIPPSARHEGLSADLDA--VVLKA 252

Query: 119 LQSNPKSRP-TMQYVSQEFL 137
           L  NP++R  T   +  + +
Sbjct: 253 LAKNPENRYQTAAEMRADLV 272

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 16/140 (11%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNR--TLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            N ++  +    + DFG  R ++     R          +++PE     V T   DV+SF
Sbjct: 162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF 221

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ--KVIQDILLASTISF 116
           GVV  E+                   + +L  V++  L    D    ++ +++       
Sbjct: 222 GVVLWEIATLAEQ------PYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMR------ 269

Query: 117 ACLQSNPKSRPTMQYVSQEF 136
            C Q NPK RP+   +    
Sbjct: 270 MCWQYNPKMRPSFLEIISSI 289

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 62.8 bits (152), Expect = 7e-13
 Identities = 27/135 (20%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 1   NNIILNSNLEAFV--ADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
            NI+  +   + V   DFG A  L+ D   +     T  + APE+     +    D+++ 
Sbjct: 156 ENIMCETKKASSVKIIDFGLATKLNPDEIVKVT-TATAEFAAPEIVDREPVGFYTDMWAI 214

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTIS 115
           GV+   +L G  P              +  +   D          V    +D +      
Sbjct: 215 GVLGYVLLSGLSPFA-----GEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIK----- 264

Query: 116 FACLQSNPKSRPTMQ 130
              LQ  P+ R T+ 
Sbjct: 265 -NLLQKEPRKRLTVH 278

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 2e-12
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 32/178 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGV 60
           N+++N+     +ADFG AR         T    T  Y APE L      +   D++S G 
Sbjct: 132 NLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGC 191

Query: 61  VTLEVLMGKHP-------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQD 107
           +  E++  +                  L +      P +  +       P    Q   + 
Sbjct: 192 IFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKV 251

Query: 108 ILLAST--ISF--ACLQSNPKSRPTMQYVSQEFLITRKTPLVKHAAIQDIS--ISQLR 159
           +        S     L  +P  R +     +  L         H   QD++  +  LR
Sbjct: 252 VPPLDEDGRSLLSQMLHYDPNKRISA----KAAL--------AHPFFQDVTKPVPHLR 297

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 8/132 (6%)

Query: 2   NIILNSNLE---AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSF 58
           N++  S        + DFG A+   + +S  T    T  Y+APE+       + CD++S 
Sbjct: 141 NLLYTSKRPNAILKLTDFGFAKETTSHNSLTTP-CYTPYYVAPEVLGPEKYDKSCDMWSL 199

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
           GV+   +L G  P      L+ S   K   I +     P P   +V ++  +   I    
Sbjct: 200 GVIMYILLCGYPPFYSNHGLAISPGMK-TRIRMGQYEFPNPEWSEVSEE--VKMLIR-NL 255

Query: 119 LQSNPKSRPTMQ 130
           L++ P  R T+ 
Sbjct: 256 LKTEPTQRMTIT 267

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 3e-12
 Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-TMVMTEKCDVYSFG 59
            N+++N N E  +A+FG AR         +    T  Y  P++ +   + +   D++S G
Sbjct: 130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189

Query: 60  VVTLEVLMGKHP-----------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDI 108
            +  E+     P           + +   L + ++ +   +  L    P P+       +
Sbjct: 190 CIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLV 249

Query: 109 LLASTISFA-------CLQSNPKSRPTMQ 130
            +   ++          L+ NP  R + +
Sbjct: 250 NVVPKLNATGRDLLQNLLKCNPVQRISAE 278

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 32/148 (21%), Positives = 55/148 (37%), Gaps = 18/148 (12%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFG 59
            N+++N   E  +ADFG AR         T    T  Y AP+ L  +   +   D++S G
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVG 188

Query: 60  VVTLEVLMGKHP-------------RDLLSSLSSSSDPKIMLIDVLDQRLP--PPVDQKV 104
            +  E++ G                  +L + +S + P +  +   D       P+  + 
Sbjct: 189 CIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWES 248

Query: 105 IQDILLASTISF--ACLQSNPKSRPTMQ 130
               L  S I      L+ +P  R T +
Sbjct: 249 FLKGLDESGIDLLSKMLKLDPNQRITAK 276

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 25/155 (16%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSS----NRTLLAGTYGYIAPE-LAYTMVMTEKCDV 55
            N+++  +    +ADFG AR      +      T    T  Y  PE L          D+
Sbjct: 146 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDL 205

Query: 56  YSFGVVTLEVLMGKHP-------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQ 102
           +  G +  E+                     L  S++    P +   ++ ++       +
Sbjct: 206 WGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQK 265

Query: 103 KVIQDILLASTISFA-------CLQSNPKSRPTMQ 130
           + ++D L A              L  +P  R    
Sbjct: 266 RKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSD 300

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 33/192 (17%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTL---LAGTYGYIAPELAYT-MVMTEKCDVYS 57
           N++LN+  +  + DFG AR+   D  +         T  Y APE+       T+  D++S
Sbjct: 139 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 198

Query: 58  FGVVTLEVLMGKHP-------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV 104
            G +  E+L  +                 +L S S      I+ +   +  L  P   KV
Sbjct: 199 VGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKV 258

Query: 105 IQDILLASTISFA------CLQSNPKSRPTM----------QYVSQEFLITRKTPLVKHA 148
             + L  +  S A       L  NP  R  +          QY         + P     
Sbjct: 259 PWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDM 318

Query: 149 AIQDISISQLRN 160
            + D+   +L+ 
Sbjct: 319 ELDDLPKEKLKE 330

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (144), Expect = 7e-12
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 21/161 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPE-LAYTMVMTEKCDVYSFGV 60
           NI+L+ +    ++D G A        + +   GT+GY+APE L   +      D +S G 
Sbjct: 137 NILLDEHGHVRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLQKGVAYDSSADWFSLGC 194

Query: 61  VTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQ 120
           +  ++L G  P                 ID +   +   +      +  L S +    LQ
Sbjct: 195 MLFKLLRGHSPFR------QHKTKDKHEIDRMTLTMAVELPDSFSPE--LRSLLE-GLLQ 245

Query: 121 SNPKSRPTMQYVS-QEFLITRKTPLVKHAAIQDISISQLRN 160
            +   R        QE          +    + +    +  
Sbjct: 246 RDVNRRLGCLGRGAQEVK--------ESPFFRSLDWQMVFL 278

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 38/167 (22%), Positives = 60/167 (35%), Gaps = 26/167 (15%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLA-GTYGYIAPELAYTMVM--TEKCDVYS 57
            NI+L+SN    + DFG ++   AD + R     GT  Y+AP++         +  D +S
Sbjct: 158 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWS 217

Query: 58  FGVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKV---IQDILLASTI 114
            GV+  E+L G  P                 I     +  PP  Q++    +D++     
Sbjct: 218 LGVLMYELLTGASPFT-----VDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQ---- 268

Query: 115 SFACLQSNPKSRPTMQYVS-QEFLITRKTPLVKHAAIQDISISQLRN 160
               L  +PK R         E          +H   Q I+   L  
Sbjct: 269 --RLLMKDPKKRLGCGPRDADEIK--------EHLFFQKINWDDLAA 305

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 17/135 (12%)

Query: 13  VADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHP- 71
           + DFG+A+ L     N + +   Y      +      T   DV+S G V  E+L+G+   
Sbjct: 164 LCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIF 223

Query: 72  ---------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFA----- 117
                     +++  L + +  +I  ++        P  +      +             
Sbjct: 224 PGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALC 283

Query: 118 --CLQSNPKSRPTMQ 130
              L+  P +R T  
Sbjct: 284 SRLLEYTPTARLTPL 298

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (123), Expect = 4e-09
 Identities = 25/159 (15%), Positives = 45/159 (28%), Gaps = 22/159 (13%)

Query: 2   NIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVV 61
           N++++      V DFG A+ +         L GT   +APE+  +    +  D ++ GV+
Sbjct: 171 NLLIDQQGYIQVTDFGFAKRVK---GRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVL 227

Query: 62  TLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQS 121
             E+  G  P       +         I     R P      +   +          LQ 
Sbjct: 228 IYEMAAGYPPFF-----ADQPIQIYEKIVSGKVRFPSHFSSDLKDLLR-------NLLQV 275

Query: 122 NPKSRPTMQYVSQEFLITRKTPLVKHAAIQDISISQLRN 160
           +   R                 +  H          +  
Sbjct: 276 DLTKRFGNLKNGVN-------DIKNHKWFATTDWIAIYQ 307

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 49.8 bits (118), Expect = 2e-08
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 26/156 (16%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           N +I + + +  + D+G A   H        +A  Y      L    +     D++S G 
Sbjct: 159 NVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGC 218

Query: 61  VTLEVLMGKHP-----------------------RDLLSSLSSSSDPKIMLIDVLDQRLP 97
           +   ++  K P                        D +   +   DP+   I     R  
Sbjct: 219 MLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKR 278

Query: 98  -PPVDQKVIQDILLASTISF--ACLQSNPKSRPTMQ 130
                    Q ++    + F    L+ + +SR T +
Sbjct: 279 WERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAR 314

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 29/160 (18%), Positives = 47/160 (29%), Gaps = 31/160 (19%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +NI++ S+    + DFG AR     S   T    T  Y APE+   M   E  D++S G 
Sbjct: 148 SNIVVKSDCTLKILDFGLART-AGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGC 206

Query: 61  VTLEVLMGKHP-----------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQK 103
           +  E++  K                               P +        +       K
Sbjct: 207 IMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPK 266

Query: 104 VIQDILLASTISFA-------------CLQSNPKSRPTMQ 130
           +  D L  +                   L  +P  R ++ 
Sbjct: 267 LFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD 306

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 8e-07
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 21/149 (14%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
            N+ +N + E  + DFG AR   ADS     +   +      +   M  T+  D++S G 
Sbjct: 150 GNLAVNEDCELKILDFGLAR--QADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGC 207

Query: 61  VTLEVLMGKHP--------------RDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQ 106
           +  E++ GK                +   +  +               +  P +++K   
Sbjct: 208 IMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFA 267

Query: 107 DILLASTISFA-----CLQSNPKSRPTMQ 130
            IL  ++          L  + + R T  
Sbjct: 268 SILTNASPLAVNLLEKMLVLDAEQRVTAG 296

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 8e-06
 Identities = 31/149 (20%), Positives = 49/149 (32%), Gaps = 21/149 (14%)

Query: 1   NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGV 60
           +N+ +N + E  + DFG AR  H D      +A  +      +   M   +  D++S G 
Sbjct: 150 SNLAVNEDCELKILDFGLAR--HTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGC 207

Query: 61  VTLEVLMGKHP------RDLLSSL-------------SSSSDPKIMLIDVLDQRLPPPVD 101
           +  E+L G+         D L  +               SS+     I  L Q       
Sbjct: 208 IMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFA 267

Query: 102 QKVIQDILLASTISFACLQSNPKSRPTMQ 130
              I    LA  +    L  +   R T  
Sbjct: 268 NVFIGANPLAVDLLEKMLVLDSDKRITAA 296

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 8e-06
 Identities = 22/151 (14%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 2   NIILNSN-LEAFVADFGTARLLHADSSNRTL--LAGTYGYIAPELAYTMVMTEKCDVYSF 58
           N+++        +     A L +A   +        T  Y +PE+          D++S 
Sbjct: 156 NVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWST 215

Query: 59  GVVTLEVLMGKHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFAC 118
             +  E++ G    +     S + D   +   +      P    +  +      T +F  
Sbjct: 216 ACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGK-----YTRTFFN 270

Query: 119 LQSNPKSRPTMQYVSQEFLITRKTPLVKHAA 149
            +   ++   +++   E ++T K    K  A
Sbjct: 271 SRGLLRNISKLKFWPLEDVLTEKYKFSKDEA 301

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.97
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.96
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.96
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.96
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.96
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.96
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.96
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.96
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.95
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.95
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.95
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.95
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.95
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.95
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.95
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.95
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.95
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.95
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.95
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.95
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.95
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.95
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.95
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.95
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.94
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.94
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.94
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.94
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.94
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.94
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.94
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.94
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.94
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.94
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.93
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.93
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.93
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.93
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.93
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.93
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.93
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.93
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.92
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.92
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.92
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.92
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.92
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.92
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.91
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.91
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.91
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.9
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.9
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.9
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.9
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.87
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	94.11

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-32  Score=182.09  Aligned_cols=135  Identities=21%  Similarity=0.333  Sum_probs=103.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.+...........||+.|+|||++.+..++.++||||+||++|+|++|.+||...     
T Consensus       145 ~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~-----  219 (293)
T d1yhwa1         145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE-----  219 (293)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS-----
T ss_pred             HHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC-----
Confidence            599999999999999999997765555555677999999999999988999999999999999999999999622     


Q ss_pred             CCCchhhHHHhhhcC-CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCccc
Q 040414           81 SSDPKIMLIDVLDQR-LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTPLV  145 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~~~  145 (160)
                        ............. +....+...   ...+++|+.+||+.||++|||++++++|+|++...+..
T Consensus       220 --~~~~~~~~~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~~~~~~  280 (293)
T d1yhwa1         220 --NPLRALYLIATNGTPELQNPEKL---SAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPLS  280 (293)
T ss_dssp             --CHHHHHHHHHHHCSCCCSSGGGS---CHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGGCCCGG
T ss_pred             --CHHHHHHHHHhCCCCCCCCcccC---CHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCCCCCC
Confidence              2222222222222 222222222   22357899999999999999999999999998655443

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=176.84  Aligned_cols=127  Identities=30%  Similarity=0.395  Sum_probs=98.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.....  ......||+.|+|||++.+..++.++||||+||++|+|++|..||..      
T Consensus       135 ~Nill~~~~~~kl~DFG~a~~~~~~--~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~------  206 (263)
T d2j4za1         135 ENLLLGSAGELKIADFGWSVHAPSS--RRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEA------  206 (263)
T ss_dssp             GGEEECTTSCEEECCCCSCSCCCCC--CCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCC------
T ss_pred             ccceecCCCCEeecccceeeecCCC--cccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCC------
Confidence            5999999999999999999865433  23346799999999999998899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                       .................+  ....   ..+.+|+.+||+.||++|||++++++|+|+...
T Consensus       207 -~~~~~~~~~i~~~~~~~p--~~~s---~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~~  261 (263)
T d2j4za1         207 -NTYQETYKRISRVEFTFP--DFVT---EGARDLISRLLKHNPSQRPMLREVLEHPWITAN  261 (263)
T ss_dssp             -SSHHHHHHHHHTTCCCCC--TTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHHH
T ss_pred             -CCHHHHHHHHHcCCCCCC--ccCC---HHHHHHHHHHccCCHhHCcCHHHHHcCcCcCCc
Confidence             222333333333333222  1111   235789999999999999999999999999753

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-32  Score=179.98  Aligned_cols=127  Identities=24%  Similarity=0.328  Sum_probs=91.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.+...........||+.|+|||++.+..++.++||||+||++|+|++|.+||...     
T Consensus       143 ~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~-----  217 (269)
T d2java1         143 ANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAF-----  217 (269)
T ss_dssp             GGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS-----
T ss_pred             hhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCC-----
Confidence            599999999999999999987665444445567899999999999888999999999999999999999999622     


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                        ..............+ ..+....   ..+.+|+.+||+.||++|||++++++|+|+
T Consensus       218 --~~~~~~~~i~~~~~~-~~~~~~s---~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         218 --SQKELAGKIREGKFR-RIPYRYS---DELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             --SHHHHHHHHHHTCCC-CCCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             --CHHHHHHHHHcCCCC-CCCcccC---HHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence              222222232222222 2222222   235789999999999999999999999985

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.9e-31  Score=175.47  Aligned_cols=132  Identities=23%  Similarity=0.306  Sum_probs=96.0

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++......  .......||+.|+|||++.+..+ +.++||||+||++|+|++|.+||.....
T Consensus       132 ~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~  211 (271)
T d1nvra_         132 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSD  211 (271)
T ss_dssp             GGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSST
T ss_pred             HHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCCh
Confidence            59999999999999999998764332  22344679999999999988776 5679999999999999999999962221


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                            ...............+.....   ...+.+|+.+||+.||++|||++++++|+|+.+.
T Consensus       212 ------~~~~~~~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~~  266 (271)
T d1nvra_         212 ------SCQEYSDWKEKKTYLNPWKKI---DSAPLALLHKILVENPSARITIPDIKKDRWYNKP  266 (271)
T ss_dssp             ------TSHHHHHHHTTCTTSTTGGGS---CHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             ------HHHHHHHHhcCCCCCCccccC---CHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCcC
Confidence                  111222222222221111111   2235789999999999999999999999999753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-31  Score=179.07  Aligned_cols=132  Identities=23%  Similarity=0.302  Sum_probs=97.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccc-----cCCCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAY-----TMVMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~-----~~~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.     ...++.++||||+||++|+|++|.+||...
T Consensus       139 ~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~  218 (288)
T d2jfla1         139 GNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL  218 (288)
T ss_dssp             GGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             hheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence            599999999999999999986543322333467899999999984     344678899999999999999999999632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCC-CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPP-PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                             ..............+. ..+...   ...+.+|+.+||+.||++|||++++++|+|+....
T Consensus       219 -------~~~~~~~~i~~~~~~~~~~~~~~---s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~~~  276 (288)
T d2jfla1         219 -------NPMRVLLKIAKSEPPTLAQPSRW---SSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTVDS  276 (288)
T ss_dssp             -------CGGGHHHHHHHSCCCCCSSGGGS---CHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCCCC
T ss_pred             -------CHHHHHHHHHcCCCCCCCccccC---CHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCC
Confidence                   2233333333333222 111221   22357899999999999999999999999997543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.4e-30  Score=174.95  Aligned_cols=128  Identities=22%  Similarity=0.311  Sum_probs=100.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++............+||+.|+|||++.+..++.++|+||+||++|+|++|.+||..      
T Consensus       134 ~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~------  207 (337)
T d1o6la_         134 ENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYN------  207 (337)
T ss_dssp             GGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             HHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCC------
Confidence            59999999999999999998765544455567899999999999999999999999999999999999999862      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                       ..............+..+  ...   ...+++|+.+||+.||.+|++     ++++++|+||..
T Consensus       208 -~~~~~~~~~i~~~~~~~p--~~~---s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~  266 (337)
T d1o6la_         208 -QDHERLFELILMEEIRFP--RTL---SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             -SSHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             -cCHHHHHHHHhcCCCCCC--ccC---CHHHHHHHHhhccCCchhhcccccccHHHHHcCccccc
Confidence             222333333333333222  111   123578999999999999994     999999999975

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-30  Score=172.54  Aligned_cols=126  Identities=21%  Similarity=0.325  Sum_probs=92.6

Q ss_pred             Cceeec-CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILN-SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~-~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++ .++.+||+|||+++.....  ......||+.|+|||++.+ .++.++||||+||++|+|++|..||...    
T Consensus       143 ~NILl~~~~~~~Kl~DFGla~~~~~~--~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~----  215 (270)
T d1t4ha_         143 DNIFITGPTGSVKIGDLGLATLKRAS--FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC----  215 (270)
T ss_dssp             GGEEESSTTSCEEECCTTGGGGCCTT--SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC----
T ss_pred             hhceeeCCCCCEEEeecCcceeccCC--ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc----
Confidence            599996 5789999999999854322  2335679999999999875 5889999999999999999999998621    


Q ss_pred             CCCCchhhHHHhhhcCCC-CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLP-PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                         .........+..... .......   ...+.+++.+||+.||++|||++|+++|+|++
T Consensus       216 ---~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         216 ---QNAAQIYRRVTSGVKPASFDKVA---IPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             ---SSHHHHHHHHTTTCCCGGGGGCC---CHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             ---ccHHHHHHHHHcCCCCcccCccC---CHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence               222223232222222 2111111   12357899999999999999999999999984

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1e-30  Score=175.72  Aligned_cols=129  Identities=24%  Similarity=0.347  Sum_probs=97.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc---CCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT---MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~---~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.....    ....||+.|+|||++.+   +.++.++||||+||++|+|++|..||..   
T Consensus       144 ~NILl~~~~~~Kl~DFG~a~~~~~~----~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~---  216 (309)
T d1u5ra_         144 GNILLSEPGLVKLGDFGSASIMAPA----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFN---  216 (309)
T ss_dssp             GGEEEETTTEEEECCCTTCBSSSSB----CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTT---
T ss_pred             ceEEECCCCCEEEeecccccccCCC----CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCC---
Confidence            5999999999999999999865432    23569999999999864   3478899999999999999999999862   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                          ...............+........   ..+.+|+.+||+.||++|||++++++|+|+.+..+
T Consensus       217 ----~~~~~~~~~i~~~~~~~~~~~~~s---~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~~~~  275 (309)
T d1u5ra_         217 ----MNAMSALYHIAQNESPALQSGHWS---EYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  275 (309)
T ss_dssp             ----SCHHHHHHHHHHSCCCCCSCTTSC---HHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCC
T ss_pred             ----CCHHHHHHHHHhCCCCCCCCCCCC---HHHHHHHHHHCcCChhHCcCHHHHHhCHHhcCCCC
Confidence                222333334444433322222111   23578999999999999999999999999987543

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-30  Score=176.59  Aligned_cols=137  Identities=24%  Similarity=0.354  Sum_probs=94.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC-
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS-   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~-   79 (160)
                      +|||++.+|.+||+|||+|+......  ..+.+||+.|+|||++.+..++.++||||+||++|+|++|+.||....... 
T Consensus       134 ~NILl~~~~~vkl~DFGla~~~~~~~--~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~~~~~~  211 (322)
T d1s9ja_         134 SNILVNSRGEIKLCDFGVSGQLIDSM--ANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKEL  211 (322)
T ss_dssp             GGEEECTTCCEEECCCCCCHHHHHHT--C---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCCCTTHH
T ss_pred             HHeeECCCCCEEEeeCCCccccCCCc--cccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
Confidence            59999999999999999998654322  234679999999999999999999999999999999999999985321100 


Q ss_pred             -----C---C-------------------------CCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCC
Q 040414           80 -----S---S-------------------------SDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSR  126 (160)
Q Consensus        80 -----~---~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~R  126 (160)
                           .   .                         ...............++..+...  ....+.+|+.+||+.||++|
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~dli~~~L~~dP~~R  289 (322)
T d1s9ja_         212 ELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPSGV--FSLEFQDFVNKCLIKNPAER  289 (322)
T ss_dssp             HHHC------------------------------CCCCHHHHHHHHHTSCCCCCCBTT--BCHHHHHHHHHHTCSSTTTS
T ss_pred             HHHHHHHhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCcccc--CCHHHHHHHHHHcCCChhHC
Confidence                 0   0                         00000001111111111111110  11235789999999999999


Q ss_pred             CCHHHHHHHHhhhcc
Q 040414          127 PTMQYVSQEFLITRK  141 (160)
Q Consensus       127 ps~~~~~~~~~~~~~  141 (160)
                      ||++++++|+|+.+.
T Consensus       290 ~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         290 ADLKQLMVHAFIKRS  304 (322)
T ss_dssp             CCHHHHHTSHHHHHH
T ss_pred             cCHHHHhhCHhhCcC
Confidence            999999999999863

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-30  Score=173.02  Aligned_cols=128  Identities=20%  Similarity=0.371  Sum_probs=93.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++.+....  .......||+.|+|||++.+..++.++||||+||++|+|++|..||..    
T Consensus       137 ~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~----  212 (288)
T d1uu3a_         137 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRA----  212 (288)
T ss_dssp             GGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCC----
T ss_pred             cccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCC----
Confidence            59999999999999999998765332  223346799999999999998899999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHH------HHHHhhhc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYV------SQEFLITR  140 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~------~~~~~~~~  140 (160)
                         ..............+..+  ...   ...+.+|+.+||+.||++|||++|+      ++|+||..
T Consensus       213 ---~~~~~~~~~i~~~~~~~p--~~~---s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~  272 (288)
T d1uu3a_         213 ---GNEYLIFQKIIKLEYDFP--EKF---FPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFES  272 (288)
T ss_dssp             ---SSHHHHHHHHHTTCCCCC--TTC---CHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTT
T ss_pred             ---cCHHHHHHHHHcCCCCCC--ccC---CHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCC
Confidence               222333333333333221  111   1235789999999999999999884      66677655

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.8e-30  Score=172.91  Aligned_cols=131  Identities=21%  Similarity=0.304  Sum_probs=86.8

Q ss_pred             Cceeec---CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILN---SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~---~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +||++.   .++.+||+|||+++..... .......||+.|+|||++.+..++.++||||+||++|+|++|.+||..   
T Consensus       136 ~Nil~~~~~~~~~vkl~DFG~a~~~~~~-~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~---  211 (307)
T d1a06a_         136 ENLLYYSLDEDSKIMISDFGLSKMEDPG-SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD---  211 (307)
T ss_dssp             GGEEESSSSTTCCEEECCC-------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC---
T ss_pred             cceeecccCCCceEEEeccceeEEccCC-CeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCC---
Confidence            589985   5789999999999865433 233446799999999999998899999999999999999999999962   


Q ss_pred             cCCCCCchhhHHHhhhcCCCC--CCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           78 LSSSSDPKIMLIDVLDQRLPP--PVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                          .................  +.....   ...+.+|+.+||+.||++|||++++++|+|+....
T Consensus       212 ----~~~~~~~~~i~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  271 (307)
T d1a06a_         212 ----ENDAKLFEQILKAEYEFDSPYWDDI---SDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGDT  271 (307)
T ss_dssp             ----SSHHHHHHHHHTTCCCCCTTTTTTS---CHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSSC
T ss_pred             ----CCHHHHHHHHhccCCCCCCccccCC---CHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCCC
Confidence                22223333333333222  111111   22357899999999999999999999999998643

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-30  Score=173.83  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=96.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++........  .....+|+.|+|||++.++.++.++||||+||++|||++ |.+||...  
T Consensus       193 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~--  270 (325)
T d1rjba_         193 RNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGI--  270 (325)
T ss_dssp             GGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC--
T ss_pred             hccccccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCC--
Confidence            5999999999999999999865543322  234557899999999999999999999999999999997 89998622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           .........+.....++.+.....   .+.+|+.+||+.||++|||+++|++|+-
T Consensus       271 -----~~~~~~~~~~~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         271 -----PVDANFYKLIQNGFKMDQPFYATE---EIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             -----CCSHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhcCCCCCCCCcCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence                 222334444444443333333322   3578999999999999999999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-29  Score=170.51  Aligned_cols=135  Identities=20%  Similarity=0.152  Sum_probs=96.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||.++.............+|+.|+|||++... .++.++||||+||++|+|++|.+||.....  
T Consensus       129 ~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~--  206 (299)
T d1ua2a_         129 NNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSD--  206 (299)
T ss_dssp             GGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--
T ss_pred             ceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCH--
Confidence            59999999999999999998765554444556789999999998755 468899999999999999999999863221  


Q ss_pred             CCCCchhhHHHhhh---c------------------CCCCCCCHHH--HHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           80 SSSDPKIMLIDVLD---Q------------------RLPPPVDQKV--IQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        80 ~~~~~~~~~~~~~~---~------------------~~~~~~~~~~--~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                           ...+.....   .                  ...+..+...  ......+.+|+.+||+.||++|||++|+++|+
T Consensus       207 -----~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp  281 (299)
T d1ua2a_         207 -----LDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMK  281 (299)
T ss_dssp             -----HHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSG
T ss_pred             -----HHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChHHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCH
Confidence                 111110000   0                  0000001000  01123468899999999999999999999999


Q ss_pred             hhhccC
Q 040414          137 LITRKT  142 (160)
Q Consensus       137 ~~~~~~  142 (160)
                      |+....
T Consensus       282 ~f~~~p  287 (299)
T d1ua2a_         282 YFSNRP  287 (299)
T ss_dssp             GGTSSS
T ss_pred             hhCCCC
Confidence            998643

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=3.7e-29  Score=168.67  Aligned_cols=125  Identities=25%  Similarity=0.286  Sum_probs=97.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.....   .....||+.|+|||++.+..++.++||||+||++|+|++|..||..      
T Consensus       133 ~NILl~~~g~vkL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~------  203 (316)
T d1fota_         133 ENILLDKNGHIKITDFGFAKYVPDV---TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD------  203 (316)
T ss_dssp             GGEEECTTSCEEECCCSSCEECSSC---BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC------
T ss_pred             hheeEcCCCCEEEecCccceEeccc---cccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCC------
Confidence            5999999999999999999876543   2346799999999999988899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                       .................+  ....   ..+.+++.+||..||.+|+     |++++++|+|+..
T Consensus       204 -~~~~~~~~~i~~~~~~~p--~~~s---~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~  262 (316)
T d1fota_         204 -SNTMKTYEKILNAELRFP--PFFN---EDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKE  262 (316)
T ss_dssp             -SSHHHHHHHHHHCCCCCC--TTSC---HHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSS
T ss_pred             -cCHHHHHHHHHcCCCCCC--CCCC---HHHHHHHHHHhhhCHHhccccchhhHHHHHcCccccc
Confidence             223333334333333222  1111   2247899999999999996     9999999999976

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.2e-30  Score=169.26  Aligned_cols=131  Identities=24%  Similarity=0.390  Sum_probs=91.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC--CccccccccccccCCcccccC---CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS--SNRTLLAGTYGYIAPELAYTM---VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~--~~~~~~~~~~~~~~Pe~~~~~---~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||+++......  .......||+.|+|||++.+.   .++.++||||+||++|||++|..||...
T Consensus       133 ~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~  212 (276)
T d1uwha_         133 NNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNI  212 (276)
T ss_dssp             GGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             HHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCC
Confidence            59999999999999999998654322  222345789999999998643   4678899999999999999999998632


Q ss_pred             cccCCCCCchhhHHHhhhcCCCCC----CCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           76 SSLSSSSDPKIMLIDVLDQRLPPP----VDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                             ................+    ....++   ..+.+++.+||+.||++|||++++++++....+
T Consensus       213 -------~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~  272 (276)
T d1uwha_         213 -------NNRDQIIFMVGRGYLSPDLSKVRSNCP---KAMKRLMAECLKKKRDERPLFPQILASIELLAR  272 (276)
T ss_dssp             -------CCHHHHHHHHHHTSCCCCGGGSCTTCC---HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             -------ChHHHHHHHHhcCCCCCcchhccccch---HHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence                   22222323222222111    111122   235789999999999999999999999876654

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-29  Score=170.95  Aligned_cols=134  Identities=23%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||.++..... .......||+.|+|||++.+..++.++||||+||++|+|++|.+||.....   
T Consensus       145 ~NILi~~~~~~kl~dfg~~~~~~~~-~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~---  220 (305)
T d1blxa_         145 QNILVTSSGQIKLADFGLARIYSFQ-MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD---  220 (305)
T ss_dssp             GGEEECTTCCEEECSCCSCCCCCGG-GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---
T ss_pred             cEEEEcCCCCeeecchhhhhhhccc-ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCH---
Confidence            5999999999999999998764432 233456789999999999999999999999999999999999999963221   


Q ss_pred             CCCchhhHHHhh----------------------hcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           81 SSDPKIMLIDVL----------------------DQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        81 ~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          ........                      ......+...........+.+|+.+||+.||++|||++++++|+|+
T Consensus       221 ----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff  296 (305)
T d1blxa_         221 ----VDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  296 (305)
T ss_dssp             ----HHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGG
T ss_pred             ----HHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhh
Confidence                11111100                      0000000000000112235789999999999999999999999999


Q ss_pred             hccC
Q 040414          139 TRKT  142 (160)
Q Consensus       139 ~~~~  142 (160)
                      ..-.
T Consensus       297 ~~i~  300 (305)
T d1blxa_         297 QDLE  300 (305)
T ss_dssp             TTCC
T ss_pred             cCch
Confidence            8643

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.95  E-value=1.4e-29  Score=172.79  Aligned_cols=133  Identities=20%  Similarity=0.192  Sum_probs=98.8

Q ss_pred             Cceeec--CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN--SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~--~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++  .++.+||+|||+++.+... .......||+.|+|||++.+..++.++||||+||++|+|++|..||..    
T Consensus       153 ~NIll~~~~~~~vkL~DFG~a~~~~~~-~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~----  227 (350)
T d1koaa2         153 ENIMFTTKRSNELKLIDFGLTAHLDPK-QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGG----  227 (350)
T ss_dssp             GGEEESSTTSCCEEECCCTTCEECCTT-SCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCC----
T ss_pred             hHeeeccCCCCeEEEeecchheecccc-cccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCC----
Confidence            599996  4678999999999876543 333456789999999999998889999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         .................+. .........+.+|+.+||+.||++|||++++++|+|+....
T Consensus       228 ---~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~  287 (350)
T d1koaa2         228 ---ENDDETLRNVKSCDWNMDD-SAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGN  287 (350)
T ss_dssp             ---SSHHHHHHHHHHTCCCSCC-GGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTT
T ss_pred             ---CCHHHHHHHHHhCCCCCCc-ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCC
Confidence               2223333333333222211 11111223457899999999999999999999999998654

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.8e-29  Score=169.35  Aligned_cols=138  Identities=22%  Similarity=0.210  Sum_probs=97.8

Q ss_pred             CceeecC---CCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.   ++.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|+|++|.+||.....
T Consensus       140 ~NIll~~~~~~~~~Kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~  218 (335)
T d2ozaa1         140 ENLLYTSKRPNAILKLTDFGFAKETTSHN-SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG  218 (335)
T ss_dssp             GGEEESCSSTTCCEEECCCTTCEECCCCC-CCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTC
T ss_pred             cccccccccccccccccccceeeeccCCC-ccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCH
Confidence            5999985   5679999999998765433 33446799999999999988899999999999999999999999974332


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccCc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKTP  143 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~~  143 (160)
                      ....   ..............+. .........+.+|+.+||+.||++|||++++++|+|+.....
T Consensus       219 ~~~~---~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~~  280 (335)
T d2ozaa1         219 LAIS---PGMKTRIRMGQYEFPN-PEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTK  280 (335)
T ss_dssp             C-----------CCCSCSSSCCT-THHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTTTS
T ss_pred             HHHH---HHHHHHHhcCCCCCCC-cccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCCCC
Confidence            1110   0000111111111111 122223345688999999999999999999999999986443

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.7e-29  Score=170.22  Aligned_cols=125  Identities=18%  Similarity=0.232  Sum_probs=97.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.+|.+||+|||+++.+...   .....||+.|+|||++.+..++.++||||+||++|+|++|..||..      
T Consensus       170 ~NILl~~~g~ikL~DFG~a~~~~~~---~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~------  240 (350)
T d1rdqe_         170 ENLLIDQQGYIQVTDFGFAKRVKGR---TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA------  240 (350)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSC---BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             HHcccCCCCCEEeeeceeeeecccc---cccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCC------
Confidence            5999999999999999999876533   2346799999999999998899999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                       ..............+..+.  ..   ...+.+++.+||+.||.+|+     |++++++|+||..
T Consensus       241 -~~~~~~~~~i~~~~~~~p~--~~---s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~  299 (350)
T d1rdqe_         241 -DQPIQIYEKIVSGKVRFPS--HF---SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFAT  299 (350)
T ss_dssp             -SSHHHHHHHHHHCCCCCCT--TC---CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTT
T ss_pred             -cCHHHHHHHHhcCCCCCCc--cC---CHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccC
Confidence             2233333333333332221  11   12347899999999999994     9999999999975

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-29  Score=167.71  Aligned_cols=128  Identities=22%  Similarity=0.280  Sum_probs=88.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc-CCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG-KHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g-~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++||||+||++|+|+++ .+||.... 
T Consensus       163 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~-  241 (299)
T d1ywna1         163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK-  241 (299)
T ss_dssp             GGEEECGGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC-
T ss_pred             cceeECCCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCC-
Confidence            599999999999999999986544322  22345689999999999999899999999999999999986 56765221 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                            ........+.....++.+.....   .+.+++.+||+.||++|||++++++|+..
T Consensus       242 ------~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rpt~~eil~~L~~  293 (299)
T d1ywna1         242 ------IDEEFCRRLKEGTRMRAPDYTTP---EMYQTMLDCWHGEPSQRPTFSELVEHLGN  293 (299)
T ss_dssp             ------CSHHHHHHHHHTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ------HHHHHHHHHhcCCCCCCCccCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                  22223333333333333222222   24789999999999999999999999864

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.95  E-value=2.4e-29  Score=171.70  Aligned_cols=131  Identities=21%  Similarity=0.200  Sum_probs=98.7

Q ss_pred             Cceeec--CCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILN--SNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~--~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++  .++.+||+|||+++.+.... ......+++.|+|||++.+..++.++||||+||++|+|++|.+||..    
T Consensus       156 ~NILl~~~~~~~vkL~DFGla~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~----  230 (352)
T d1koba_         156 ENIMCETKKASSVKIIDFGLATKLNPDE-IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAG----  230 (352)
T ss_dssp             GGEEESSTTCCCEEECCCTTCEECCTTS-CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCC----
T ss_pred             ccccccccCCCeEEEeecccceecCCCC-ceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCC----
Confidence            599998  57899999999998765432 33445689999999999998899999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCC--CCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLP--PPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         ................  .......   ...+.+|+.+||+.||++|||++++++|+|+....
T Consensus       231 ---~~~~~~~~~i~~~~~~~~~~~~~~~---s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         231 ---EDDLETLQNVKRCDWEFDEDAFSSV---SPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             ---SSHHHHHHHHHHCCCCCCSSTTTTS---CHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             ---CCHHHHHHHHHhCCCCCCcccccCC---CHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCCc
Confidence               2222333333333222  2111111   22357899999999999999999999999998643

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.1e-28  Score=169.17  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=94.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCccccc-CCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYT-MVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~-~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.+|.+||+|||+++.+....  .....||+.|+|||++.. ..++.++||||+||++|+|++|..||.....  
T Consensus       136 ~NILl~~~g~iKl~DFGla~~~~~~~--~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--  211 (364)
T d1omwa3         136 ANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKT--  211 (364)
T ss_dssp             GGEEECSSSCEEECCCTTCEECSSSC--CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCS--
T ss_pred             ceeEEcCCCcEEEeeeceeeecCCCc--ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCH--
Confidence            59999999999999999998765432  234569999999999865 4578899999999999999999999963221  


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCC-----HHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPT-----MQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps-----~~~~~~~~~~~~  140 (160)
                         ............ .+...+....   ..+.+|+.+||+.||.+|||     ++++++|+||..
T Consensus       212 ---~~~~~~~~~~~~-~~~~~~~~~s---~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~  270 (364)
T d1omwa3         212 ---KDKHEIDRMTLT-MAVELPDSFS---PELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRS  270 (364)
T ss_dssp             ---SCHHHHHHHSSS-CCCCCCSSSC---HHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTT
T ss_pred             ---HHHHHHHHhccc-CCCCCCCCCC---HHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccC
Confidence               111111221111 1111111111   23578999999999999999     799999999975

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6e-29  Score=166.26  Aligned_cols=133  Identities=26%  Similarity=0.262  Sum_probs=97.2

Q ss_pred             CceeecCCC----ceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNL----EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~----~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +||+++.++    .+|++|||+++...... ......+++.|+|||++.+..++.++||||+||++|+|++|..||..  
T Consensus       142 ~Nill~~~~~~~~~vkl~DfG~a~~~~~~~-~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~--  218 (293)
T d1jksa_         142 ENIMLLDRNVPKPRIKIIDFGLAHKIDFGN-EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLG--  218 (293)
T ss_dssp             GGEEESCSSSSSCCEEECCCTTCEECTTSC-BCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC--
T ss_pred             ceEEEecCCCcccceEecchhhhhhcCCCc-cccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCC--
Confidence            599998776    49999999998764332 23345688999999999988899999999999999999999999962  


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                           .................+ ..........+.+|+.+||+.||++|||++++++|+|++...
T Consensus       219 -----~~~~~~~~~i~~~~~~~~-~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~  278 (293)
T d1jksa_         219 -----DTKQETLANVSAVNYEFE-DEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKD  278 (293)
T ss_dssp             -----SSHHHHHHHHHTTCCCCC-HHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC--
T ss_pred             -----CCHHHHHHHHHhcCCCCC-chhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCC
Confidence                 222223333322222211 111112233467899999999999999999999999998644

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.4e-29  Score=163.91  Aligned_cols=128  Identities=24%  Similarity=0.331  Sum_probs=91.2

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++.+..... ......+++.|+|||++....++.++||||+||++|||++|..|+..     
T Consensus       138 ~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~-----  212 (272)
T d1qpca_         138 ANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP-----  212 (272)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST-----
T ss_pred             hheeeecccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC-----
Confidence            599999999999999999997654332 22335578899999999988889999999999999999996544321     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHH--HHhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQ--EFLI  138 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~--~~~~  138 (160)
                       .. ........+.....+..+.....   .+.+|+.+||+.||++|||+++|++  +.|+
T Consensus       213 -~~-~~~~~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         213 -GM-TNPEVIQNLERGYRMVRPDNCPE---ELYQLMRLCWKERPEDRPTFDYLRSVLEDFF  268 (272)
T ss_dssp             -TC-CHHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -CC-CHHHHHHHHHhcCCCCCcccChH---HHHHHHHHHcCCCHhHCcCHHHHHHHhhhhh
Confidence             11 12222222333222222222222   3578999999999999999999988  4444

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4e-29  Score=168.74  Aligned_cols=128  Identities=23%  Similarity=0.333  Sum_probs=99.4

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+||+|||+++.............||+.|+|||++.+..++.++||||+||++|+|++|..||..      
T Consensus       132 ~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~------  205 (320)
T d1xjda_         132 DNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHG------  205 (320)
T ss_dssp             GGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC------
T ss_pred             cceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCC------
Confidence            59999999999999999998765544444556799999999999999999999999999999999999999962      


Q ss_pred             CCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH-HHHHHHhhhc
Q 040414           81 SSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ-YVSQEFLITR  140 (160)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~-~~~~~~~~~~  140 (160)
                       ..............+..+  ...   ...+.+|+.+||..||++|||++ ++++|+|+..
T Consensus       206 -~~~~~~~~~i~~~~~~~p--~~~---s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~  260 (320)
T d1xjda_         206 -QDEEELFHSIRMDNPFYP--RWL---EKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFRE  260 (320)
T ss_dssp             -SSHHHHHHHHHHCCCCCC--TTS---CHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTT
T ss_pred             -CCHHHHHHHHHcCCCCCC--ccC---CHHHHHHHHHhcccCCCCCcCHHHHHHhCchhcc
Confidence             222333333333333222  111   12357899999999999999995 8999999975

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-28  Score=164.72  Aligned_cols=128  Identities=27%  Similarity=0.384  Sum_probs=84.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-----cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-----RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-----~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~   74 (160)
                      +|||++.++.+||+|||+++.+......     .....+|+.|+|||.+.+..++.++||||+||++|||++ |.+||..
T Consensus       157 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~  236 (299)
T d1jpaa_         157 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD  236 (299)
T ss_dssp             GGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             ceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCC
Confidence            5999999999999999999876543221     112346889999999998889999999999999999997 8999862


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                      ..       ... ....+......+.+.....   .+.+++.+||+.||++|||+++|++.+...
T Consensus       237 ~~-------~~~-~~~~i~~~~~~~~~~~~~~---~l~~li~~cl~~~P~~RPs~~ei~~~L~~~  290 (299)
T d1jpaa_         237 MT-------NQD-VINAIEQDYRLPPPMDCPS---ALHQLMLDCWQKDRNHRPKFGQIVNTLDKM  290 (299)
T ss_dssp             CC-------HHH-HHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSTTTSCCHHHHHHHHHHH
T ss_pred             CC-------HHH-HHHHHHcCCCCCCCccchH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence            21       222 2222323222222222222   347899999999999999999999987543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-28  Score=163.71  Aligned_cols=130  Identities=23%  Similarity=0.286  Sum_probs=87.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.+......   .....||+.|+|||++.+..++.++||||+||++|||+++..|+..   
T Consensus       139 ~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~---  215 (283)
T d1mqba_         139 RNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW---  215 (283)
T ss_dssp             GGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT---
T ss_pred             ceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc---
Confidence            5999999999999999999876543221   1224578899999999998899999999999999999986555431   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                          ..........+.....++.+.....   .+.+++.+||+.||++|||+.+|++.+....
T Consensus       216 ----~~~~~~~~~~i~~~~~~~~~~~~~~---~l~~li~~cl~~~p~~RPt~~eil~~L~~l~  271 (283)
T d1mqba_         216 ----ELSNHEVMKAINDGFRLPTPMDCPS---AIYQLMMQCWQQERARRPKFADIVSILDKLI  271 (283)
T ss_dssp             ----TCCHHHHHHHHHTTCCCCCCTTCBH---HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred             ----cCCHHHHHHHHhccCCCCCchhhHH---HHHHHHHHHCcCCHhHCcCHHHHHHHHHHHh
Confidence                1122223333333333333333222   3578999999999999999999999775443

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.4e-29  Score=163.78  Aligned_cols=128  Identities=21%  Similarity=0.286  Sum_probs=83.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc-CCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG-KHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g-~~~~~~~~~~   78 (160)
                      +|||++.++.+||+|||+++........ .....||+.|+|||++.+..++.++||||+||++|||+++ .+||..    
T Consensus       130 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~----  205 (263)
T d1sm2a_         130 RNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYEN----  205 (263)
T ss_dssp             GGEEECGGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCS----
T ss_pred             hheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCC----
Confidence            5999999999999999999876543322 2235678899999999998899999999999999999985 555541    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                         . ........+........+..+..   .+.+++.+||+.||++|||++++++++...
T Consensus       206 ---~-~~~~~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~~p~~Rps~~~il~~L~~i  259 (263)
T d1sm2a_         206 ---R-SNSEVVEDISTGFRLYKPRLAST---HVYQIMNHCWKERPEDRPAFSRLLRQLAEI  259 (263)
T ss_dssp             ---C-CHHHHHHHHHHTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             ---C-CHHHHHHHHHhcCCCCCccccCH---HHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence               1 12222222222222222222222   347899999999999999999999997644

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.4e-28  Score=163.84  Aligned_cols=129  Identities=23%  Similarity=0.271  Sum_probs=94.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCcc-ccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNR-TLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~-~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++......... ....+++.|+|||++.+..++.++||||+||++|+|++|..|+.      
T Consensus       144 ~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~------  217 (287)
T d1opja_         144 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY------  217 (287)
T ss_dssp             GGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSS------
T ss_pred             CeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCC------
Confidence            59999999999999999998765443222 22347888999999999999999999999999999999766653      


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                       ...........+.....++.+.....   .+.+|+.+||+.||++|||+++|++.+...
T Consensus       218 -~~~~~~~~~~~i~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rps~~ei~~~L~~~  273 (287)
T d1opja_         218 -PGIDLSQVYELLEKDYRMERPEGCPE---KVYELMRACWQWNPSDRPSFAEIHQAFETM  273 (287)
T ss_dssp             -TTCCHHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHT
T ss_pred             -CcchHHHHHHHHhcCCCCCCCccchH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence             11122333344444443333333322   357899999999999999999998876543

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-28  Score=161.89  Aligned_cols=127  Identities=22%  Similarity=0.311  Sum_probs=91.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +|||++.++.+||+|||+++.+......   .....||+.|+|||.+.+..++.++||||+||++|||++ |.+||....
T Consensus       136 ~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         136 RNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             hhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCC
Confidence            5999999999999999999876543221   123457889999999998889999999999999999997 899986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHH---HHHhh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVS---QEFLI  138 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~---~~~~~  138 (160)
                              .......+.....++.+..++.   .+.+++.+||+.||++|||+++|+   +++|+
T Consensus       216 --------~~~~~~~i~~~~~~~~p~~~~~---~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~  269 (277)
T d1xbba_         216 --------GSEVTAMLEKGERMGCPAGCPR---EMYDLMNLCWTYDVENRPGFAAVELRLRNYYY  269 (277)
T ss_dssp             --------HHHHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHcCCCCCCCcccCH---HHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHh
Confidence                    2222333333333333333322   347899999999999999999985   45543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-28  Score=164.29  Aligned_cols=136  Identities=20%  Similarity=0.172  Sum_probs=96.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||.++.............+|+.|+|||.+....+ +.++|+||+||++|+|++|..||.....  
T Consensus       131 eNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~~~--  208 (298)
T d1gz8a_         131 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSE--  208 (298)
T ss_dssp             GGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--
T ss_pred             hheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCCCH--
Confidence            5999999999999999999876655444555678999999998876654 7789999999999999999999863221  


Q ss_pred             CCCCchhhHHHhh--------------------hcCCCCCCCH----HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           80 SSSDPKIMLIDVL--------------------DQRLPPPVDQ----KVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        80 ~~~~~~~~~~~~~--------------------~~~~~~~~~~----~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                           ........                    ....+.....    ........+.+|+.+||+.||++|||++|+++|
T Consensus       209 -----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H  283 (298)
T d1gz8a_         209 -----IDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAH  283 (298)
T ss_dssp             -----HHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred             -----HHHHHHHHHhcCCCchhhccccccccccccccccccccchhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCC
Confidence                 11110000                    0000000000    001112346789999999999999999999999


Q ss_pred             HhhhccCc
Q 040414          136 FLITRKTP  143 (160)
Q Consensus       136 ~~~~~~~~  143 (160)
                      +|+.....
T Consensus       284 ~ff~~~~~  291 (298)
T d1gz8a_         284 PFFQDVTK  291 (298)
T ss_dssp             GGGTTCCC
T ss_pred             HhhccCCC
Confidence            99976543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-28  Score=161.56  Aligned_cols=121  Identities=22%  Similarity=0.304  Sum_probs=91.5

Q ss_pred             CceeecC-CCceEEcccccceeccCCCCccccccccccccCCcccccCCC-CCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNS-NLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVM-TEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~-~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~-~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++. ++.+||+|||+++.....  ......||+.|+|||++.+..+ +.++||||+||++|+|++|..||..... 
T Consensus       139 ~NIll~~~~~~vkl~DFG~a~~~~~~--~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~-  215 (273)
T d1xwsa_         139 ENILIDLNRGELKLIDFGSGALLKDT--VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEE-  215 (273)
T ss_dssp             GGEEEETTTTEEEECCCTTCEECCSS--CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHH-
T ss_pred             cceEEecCCCeEEECccccceecccc--cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchH-
Confidence            5999985 479999999999865432  2334679999999999987765 5668999999999999999999863211 


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhcc
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                               ... .....+...+       ..+.+|+.+||+.||++|||++++++|+|++..
T Consensus       216 ---------i~~-~~~~~~~~~s-------~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         216 ---------IIR-GQVFFRQRVS-------SECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             ---------HHH-CCCCCSSCCC-------HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             ---------Hhh-cccCCCCCCC-------HHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence                     111 1111222222       235789999999999999999999999999763

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.5e-28  Score=158.39  Aligned_cols=126  Identities=22%  Similarity=0.327  Sum_probs=93.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc-cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN-RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||++++++.+||+|||+++........ .....+|+.|+|||.+.+..++.++||||+|+++|||++ |..||...   
T Consensus       129 ~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~---  205 (258)
T d1k2pa_         129 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERF---  205 (258)
T ss_dssp             GGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTS---
T ss_pred             eeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCC---
Confidence            5999999999999999999865543322 223557889999999998889999999999999999997 79998622   


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                          ......... ......+.+.....   .+.+|+.+||+.||++|||++++++|+.
T Consensus       206 ----~~~~~~~~i-~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~RPt~~eil~~L~  256 (258)
T d1k2pa_         206 ----TNSETAEHI-AQGLRLYRPHLASE---KVYTIMYSCWHEKADERPTFKILLSNIL  256 (258)
T ss_dssp             ----CHHHHHHHH-HTTCCCCCCTTCCH---HHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             ----CHHHHHHHH-HhCCCCCCcccccH---HHHHHHHHHccCCHhHCcCHHHHHHHhh
Confidence                222222222 22222222222222   3578999999999999999999999973

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.2e-28  Score=161.34  Aligned_cols=124  Identities=23%  Similarity=0.308  Sum_probs=91.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||+++.+......   .....+|+.|+|||++.++.++.++||||+||++|||++ |..||....
T Consensus       138 ~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~  217 (285)
T d1u59a_         138 RNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMK  217 (285)
T ss_dssp             GGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             hheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCC
Confidence            5999999999999999999876543221   223457889999999998889999999999999999997 899986221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                             ... ....+.....++.+..++.   .+.+++.+||+.||++|||+.+|++.
T Consensus       218 -------~~~-~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~~p~~RPs~~~i~~~  265 (285)
T d1u59a_         218 -------GPE-VMAFIEQGKRMECPPECPP---ELYALMSDCWIYKWEDRPDFLTVEQR  265 (285)
T ss_dssp             -------THH-HHHHHHTTCCCCCCTTCCH---HHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             -------HHH-HHHHHHcCCCCCCCCcCCH---HHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                   122 2222222222223222222   34689999999999999999999554

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-28  Score=159.95  Aligned_cols=130  Identities=26%  Similarity=0.351  Sum_probs=87.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++....+.. ......+++.|+|||.+..+.++.++||||+|+++|+|++|..|+..     
T Consensus       142 ~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~-----  216 (285)
T d1fmka3         142 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP-----  216 (285)
T ss_dssp             GGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST-----
T ss_pred             eEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC-----
Confidence            599999999999999999986643332 22335578999999999999999999999999999999996555431     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH--Hhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE--FLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~--~~~~~  140 (160)
                       .. ........+......+.+..+..   .+.+++.+||+.||++|||+++|+..  .++..
T Consensus       217 -~~-~~~~~~~~i~~~~~~~~~~~~~~---~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~  274 (285)
T d1fmka3         217 -GM-VNREVLDQVERGYRMPCPPECPE---SLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  274 (285)
T ss_dssp             -TC-CHHHHHHHHHTTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred             -CC-CHHHHHHHHHhcCCCCCCcccCH---HHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcC
Confidence             11 12222222333333333333332   35789999999999999999999884  45544

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3e-28  Score=164.42  Aligned_cols=129  Identities=22%  Similarity=0.326  Sum_probs=93.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++........  .....||+.|+|||++.++.++.++||||+||++|||++ |.+||.... 
T Consensus       140 ~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~-  218 (317)
T d1xkka_         140 RNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP-  218 (317)
T ss_dssp             GGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC-
T ss_pred             hcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC-
Confidence            5999999999999999999876543322  223457899999999999989999999999999999998 788886222 


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             ...+...+.....++.+..+..   .+.+++.+||+.||++|||+.+++.++....
T Consensus       219 -------~~~~~~~i~~~~~~~~p~~~~~---~~~~li~~cl~~dP~~RPs~~eil~~l~~~~  271 (317)
T d1xkka_         219 -------ASEISSILEKGERLPQPPICTI---DVYMIMVKCWMIDADSRPKFRELIIEFSKMA  271 (317)
T ss_dssp             -------GGGHHHHHHHTCCCCCCTTBCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHcCCCCCCCcccCH---HHHHHHHHhCCCChhhCcCHHHHHHHHHHHH
Confidence                   1122222222222222222222   2478999999999999999999999977654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.94  E-value=6.7e-28  Score=159.78  Aligned_cols=131  Identities=20%  Similarity=0.242  Sum_probs=95.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC------CCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM------VMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~------~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +||+++.++.+||+|||+++...... ......||+.|++||.+.+.      .++.++||||+||++|+|++|..||..
T Consensus       139 ~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~  217 (277)
T d1phka_         139 ENILLDDDMNIKLTDFGFSCQLDPGE-KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH  217 (277)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCTTC-CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ceEEEcCCCCeEEccchheeEccCCC-ceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCC
Confidence            59999999999999999998765432 23346689999999988642      356789999999999999999999962


Q ss_pred             ccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           75 LSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                             .................+.. ........+.+|+.+||+.||++|||++++++|+|+++
T Consensus       218 -------~~~~~~~~~i~~~~~~~~~~-~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         218 -------RKQMLMLRMIMSGNYQFGSP-EWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             -------SSHHHHHHHHHHTCCCCCTT-TGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             -------CCHHHHHHHHHhCCCCCCCc-ccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence                   22223333333333221111 11112234578999999999999999999999999964

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-28  Score=159.78  Aligned_cols=128  Identities=20%  Similarity=0.294  Sum_probs=84.7

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~   78 (160)
                      +||+++.++.+||+|||+++....... ......+|+.|+|||++.+..++.++||||+||++|||++ |.+||....  
T Consensus       137 ~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~--  214 (273)
T d1mp8a_         137 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK--  214 (273)
T ss_dssp             GGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC--
T ss_pred             hheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCC--
Confidence            599999999999999999986543322 2233457889999999998889999999999999999997 889986322  


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ......... .....+.+.....   .+.+|+.+||+.||++|||+++|++++...
T Consensus       215 -----~~~~~~~i~-~~~~~~~~~~~~~---~~~~li~~cl~~dp~~Rps~~ei~~~L~~i  266 (273)
T d1mp8a_         215 -----NNDVIGRIE-NGERLPMPPNCPP---TLYSLMTKCWAYDPSRRPRFTELKAQLSTI  266 (273)
T ss_dssp             -----GGGHHHHHH-TTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHH-cCCCCCCCCCCCH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHH
Confidence                 222222222 2222223322222   357899999999999999999999997644

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-27  Score=160.43  Aligned_cols=130  Identities=21%  Similarity=0.217  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +|||+++++.+||+|||+++........    .....+|+.|++||.+....++.++||||||+++|||++|..||....
T Consensus       159 ~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~  238 (311)
T d1r0pa_         159 RNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  238 (311)
T ss_dssp             GGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC--
T ss_pred             HhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCC
Confidence            5999999999999999999876543221    122457889999999998889999999999999999999777764221


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .      ........... ..+..+..+..   .+.+|+.+||+.||++|||+.+|++++....
T Consensus       239 ~------~~~~~~~i~~g-~~~~~p~~~~~---~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~  292 (311)
T d1r0pa_         239 N------TFDITVYLLQG-RRLLQPEYCPD---PLYEVMLKCWHPKAEMRPSFSELVSRISAIF  292 (311)
T ss_dssp             ----------CHHHHHTT-CCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             C------HHHHHHHHHcC-CCCCCcccCcH---HHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence            1      11111111111 12222222222   3578999999999999999999999976654

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.2e-27  Score=161.55  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=98.7

Q ss_pred             CceeecCC--CceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSN--LEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~--~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.+  +.+||+|||+++...... ......+++.|++||.+.+..++.++||||+||++|+|++|.+||..    
T Consensus       131 ~NIll~~~~~~~ikl~DFG~~~~~~~~~-~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~----  205 (321)
T d1tkia_         131 ENIIYQTRRSSTIKIIEFGQARQLKPGD-NFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLA----  205 (321)
T ss_dssp             GGEEESSSSCCCEEECCCTTCEECCTTC-EEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCC----
T ss_pred             cceeecCCCceEEEEcccchhhccccCC-cccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCC----
Confidence            59999854  579999999998764332 23445688999999999988889999999999999999999999962    


Q ss_pred             CCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhccC
Q 040414           79 SSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITRKT  142 (160)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~~~  142 (160)
                         .................+. .........+.+|+.+||..||++|||++++++|+|+....
T Consensus       206 ---~~~~~~~~~i~~~~~~~~~-~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~~  265 (321)
T d1tkia_         206 ---ETNQQIIENIMNAEYTFDE-EAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             ---SSHHHHHHHHHHTCCCCCH-HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             ---CCHHHHHHHHHhCCCCCCh-hhccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCc
Confidence               2223333344333333221 11112233468899999999999999999999999998644

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.5e-27  Score=160.05  Aligned_cols=127  Identities=19%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcC-Cccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGK-HPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~-~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.+.....  ......+++.|+|||.+.+..++.++||||+||++|||++|. +||..   
T Consensus       169 ~NILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~---  245 (301)
T d1lufa_         169 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYG---  245 (301)
T ss_dssp             GGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTT---
T ss_pred             cceEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCC---
Confidence            599999999999999999986543322  223456788999999999999999999999999999999885 66652   


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                          .............. .++.+...+.   .+.+++..||+.||++|||+.+|++.+..
T Consensus       246 ----~~~~e~~~~v~~~~-~~~~p~~~~~---~~~~li~~cl~~~P~~RPt~~ev~~~L~~  298 (301)
T d1lufa_         246 ----MAHEEVIYYVRDGN-ILACPENCPL---ELYNLMRLCWSKLPADRPSFCSIHRILQR  298 (301)
T ss_dssp             ----SCHHHHHHHHHTTC-CCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHcCC-CCCCCccchH---HHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                22222333333222 2222222222   35789999999999999999999887754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.93  E-value=3.6e-27  Score=157.13  Aligned_cols=140  Identities=21%  Similarity=0.194  Sum_probs=89.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+|++|||.+..............+++.|++||.+.+.. ++.++|+||+||++++|++|..||.......
T Consensus       129 ~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~~~~~  208 (286)
T d1ob3a_         129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD  208 (286)
T ss_dssp             GGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCCCHHH
Confidence            599999999999999999987654444344456888999999987654 5889999999999999999999996321100


Q ss_pred             -------------CCCCchh-hHHHh---hhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 -------------SSSDPKI-MLIDV---LDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 -------------~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                                   ....... .....   .......+...........+.+|+.+||+.||++|||++|+++|+|+++
T Consensus       209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         209 QLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHhhCCCChhhccchhhhhhcccccccccCcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence                         0000000 00000   0000000000000001123578999999999999999999999999974

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2e-27  Score=157.21  Aligned_cols=127  Identities=21%  Similarity=0.321  Sum_probs=91.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc---cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN---RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~---~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~   76 (160)
                      +||+++.++.+||+|||+++........   .....++..|+|||.+.+..++.++||||+|+++|||++ |.+||..  
T Consensus       140 ~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~--  217 (273)
T d1u46a_         140 RNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIG--  217 (273)
T ss_dssp             GGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTT--
T ss_pred             HHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCC--
Confidence            5999999999999999999976543321   122446778999999998888899999999999999997 8999862  


Q ss_pred             ccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                           ................++.+...+.   .+.+++.+||+.||++|||+.+|++.+.
T Consensus       218 -----~~~~~~~~~i~~~~~~~~~~~~~~~---~l~~li~~cl~~dp~~RPt~~ei~~~L~  270 (273)
T d1u46a_         218 -----LNGSQILHKIDKEGERLPRPEDCPQ---DIYNVMVQCWAHKPEDRPTFVALRDFLL  270 (273)
T ss_dssp             -----CCHHHHHHHHHTSCCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHhCCCCCCCcccccH---HHHHHHHHHcCCChhHCcCHHHHHHHHH
Confidence                 2223333333333333333322222   3578999999999999999999987654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.1e-27  Score=158.91  Aligned_cols=139  Identities=20%  Similarity=0.172  Sum_probs=93.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+|++|||.++......   ....+++.|+|||++.+. .++.++||||+||++++|++|.+||.......
T Consensus       150 ~NIL~~~~~~~kl~Dfg~a~~~~~~~---~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~  226 (346)
T d1cm8a_         150 GNLAVNEDCELKILDFGLARQADSEM---TGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLD  226 (346)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSSC---CSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             chhhcccccccccccccceeccCCcc---ccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHH
Confidence            59999999999999999998765432   345689999999998764 45789999999999999999999986322100


Q ss_pred             C--------C---------CCc--hhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S--------S---------SDP--KIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~--------~---------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .        .         ...  ..........................+.+|+.+||..||++|||++++++|+|+..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~  306 (346)
T d1cm8a_         227 QLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFES  306 (346)
T ss_dssp             HHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTT
T ss_pred             HHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCc
Confidence            0        0         000  00000000000000000000011123578999999999999999999999999987


Q ss_pred             cC
Q 040414          141 KT  142 (160)
Q Consensus       141 ~~  142 (160)
                      ..
T Consensus       307 ~~  308 (346)
T d1cm8a_         307 LH  308 (346)
T ss_dssp             TC
T ss_pred             CC
Confidence            43

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-27  Score=156.66  Aligned_cols=140  Identities=20%  Similarity=0.277  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc----cccccccccccCCcccccCC------CCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN----RTLLAGTYGYIAPELAYTMV------MTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~~------~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|||++.++.+||+|||+++........    .....||+.|+|||++.+..      ++.++||||+||++|||++|.+
T Consensus       137 ~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~  216 (303)
T d1vjya_         137 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCS  216 (303)
T ss_dssp             GGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred             cceEEcCCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCC
Confidence            5999999999999999999876543321    23467899999999987542      4567999999999999999988


Q ss_pred             ccccccccCC-------CCCchhhH-HHhhhcCCCCCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           71 PRDLLSSLSS-------SSDPKIML-IDVLDQRLPPPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        71 ~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      |+........       ........ .........++.+..  .......+.+++.+||+.||++|||+.+|++++....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~L~~i~  296 (303)
T d1vjya_         217 IGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLS  296 (303)
T ss_dssp             BTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHH
T ss_pred             CCCcccccccchhhcccccchHHHHHHHHhccccCCCCCcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHH
Confidence            7642221110       11111222 222333333333221  2223344678999999999999999999999876544

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-26  Score=155.76  Aligned_cols=141  Identities=16%  Similarity=0.077  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCC----CccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS----SNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLL   75 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~   75 (160)
                      +|||++.++.+||+|||+++......    .......+|+.|+|||++.+. .++.++||||+||++++|++|++||...
T Consensus       146 ~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~  225 (318)
T d3blha1         146 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  225 (318)
T ss_dssp             GGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hheeecCCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC
Confidence            59999999999999999997654322    122335689999999998765 5788999999999999999999998632


Q ss_pred             cccCC----------------CCCchhhHHHhhhcCCCCCCC-HHHH---HHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           76 SSLSS----------------SSDPKIMLIDVLDQRLPPPVD-QKVI---QDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        76 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                      .....                ..................... ....   .....+.+|+.+||+.||++|||++++++|
T Consensus       226 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~H  305 (318)
T d3blha1         226 TEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH  305 (318)
T ss_dssp             SHHHHHHHHHHHHCCCCTTTSTTCCCC-------CCSSCCBCHHHHHHHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHS
T ss_pred             CHHHHHHHHHHhcCCCChhhccccchhhhhhhhcccccccccchhhhccccCCHHHHHHHHHHCcCChhHCcCHHHHHcC
Confidence            11000                000000000000000000000 1111   112245789999999999999999999999


Q ss_pred             Hhhhcc
Q 040414          136 FLITRK  141 (160)
Q Consensus       136 ~~~~~~  141 (160)
                      +||...
T Consensus       306 pff~~~  311 (318)
T d3blha1         306 DFFWSD  311 (318)
T ss_dssp             GGGSSS
T ss_pred             hhhccC
Confidence            999853

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-26  Score=152.28  Aligned_cols=125  Identities=17%  Similarity=0.258  Sum_probs=86.8

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~~~   79 (160)
                      +||+++.++.+|++|||.++......   ....++..|+|||.+.+..++.++||||||+++|||++ |.+||....   
T Consensus       132 ~Nil~~~~~~~kl~dfg~s~~~~~~~---~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~---  205 (262)
T d1byga_         132 RNVLVSEDNVAKVSDFGLTKEASSTQ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP---  205 (262)
T ss_dssp             GGEEECTTSCEEECCCCC---------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC---
T ss_pred             HhheecCCCCEeecccccceecCCCC---ccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC---
Confidence            59999999999999999998654322   23456788999999998889999999999999999998 688775221   


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ...+...+.....++.+.....   .+.+|+.+||+.||++|||+.++++++...
T Consensus       206 -----~~~~~~~i~~~~~~~~~~~~~~---~~~~li~~cl~~dP~~Rps~~~l~~~L~~i  257 (262)
T d1byga_         206 -----LKDVVPRVEKGYKMDAPDGCPP---AVYEVMKNCWHLDAAMRPSFLQLREQLEHI  257 (262)
T ss_dssp             -----GGGHHHHHTTTCCCCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHcCCCCCCCccCCH---HHHHHHHHHcccCHhHCcCHHHHHHHHHHH
Confidence                 1222222333233333332222   347899999999999999999999998644

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-26  Score=156.41  Aligned_cols=141  Identities=21%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCC---ccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS---NRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLS   76 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~---~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~   76 (160)
                      +|||++.++.+||+|||+++.......   ......+++.|+|||++... .++.++||||+||++++|++|.+||....
T Consensus       138 ~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~~  217 (345)
T d1pmea_         138 SNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH  217 (345)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             ceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCCC
Confidence            599999999999999999986543322   22345689999999998554 46788999999999999999999986322


Q ss_pred             ccCC---------CC-------CchhhHHHhhhcCCC-CCCCHH--HHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHh
Q 040414           77 SLSS---------SS-------DPKIMLIDVLDQRLP-PPVDQK--VIQDILLASTISFACLQSNPKSRPTMQYVSQEFL  137 (160)
Q Consensus        77 ~~~~---------~~-------~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~  137 (160)
                      ....         ..       ............... ...+..  .......+.+|+.+||+.||++|||++++++|+|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf  297 (345)
T d1pmea_         218 YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPY  297 (345)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred             HHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCccCCCCHHHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHh
Confidence            1000         00       000000000000000 000100  0011123578999999999999999999999999


Q ss_pred             hhcc
Q 040414          138 ITRK  141 (160)
Q Consensus       138 ~~~~  141 (160)
                      +...
T Consensus       298 ~~~~  301 (345)
T d1pmea_         298 LEQY  301 (345)
T ss_dssp             GTTT
T ss_pred             hccC
Confidence            9853

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-26  Score=154.07  Aligned_cols=128  Identities=21%  Similarity=0.197  Sum_probs=90.9

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcC-CccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGK-HPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~-~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||+++....... .....+|..|++||.+.+..++.++||||||+++|+|++|. +||..     
T Consensus       156 ~NIL~~~~~~~kl~DfG~a~~~~~~~~-~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~-----  229 (309)
T d1fvra_         156 RNILVGENYVAKIADFGLSRGQEVYVK-KTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG-----  229 (309)
T ss_dssp             GGEEECGGGCEEECCTTCEESSCEECC-C----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTT-----
T ss_pred             ceEEEcCCCceEEcccccccccccccc-ccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCC-----
Confidence            599999999999999999985443222 22345788999999999888999999999999999999965 56642     


Q ss_pred             CCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 SSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                        ......... +.....++.+.....   .+.+|+.+||+.||++|||+++|++++....
T Consensus       230 --~~~~~~~~~-i~~~~~~~~~~~~~~---~~~~li~~cl~~dP~~RPs~~eil~~L~~i~  284 (309)
T d1fvra_         230 --MTCAELYEK-LPQGYRLEKPLNCDD---EVYDLMRQCWREKPYERPSFAQILVSLNRML  284 (309)
T ss_dssp             --CCHHHHHHH-GGGTCCCCCCTTBCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --CCHHHHHHH-HHhcCCCCCCccCCH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence              122222222 222222222222222   3578999999999999999999999975543

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-26  Score=155.40  Aligned_cols=132  Identities=24%  Similarity=0.370  Sum_probs=94.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCC-ccccccccccccCCcccccCC--CCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS-NRTLLAGTYGYIAPELAYTMV--MTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~~~Pe~~~~~~--~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.+..... ......+++.|++||.+.+..  ++.++||||+||++|+|++|..||.....
T Consensus       158 ~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~  237 (322)
T d1vzoa_         158 ENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGE  237 (322)
T ss_dssp             GGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTS
T ss_pred             cceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCH
Confidence            599999999999999999987654322 234456889999999987653  56789999999999999999999974332


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-----CHHHHHHHHhhhc
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-----TMQYVSQEFLITR  140 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-----s~~~~~~~~~~~~  140 (160)
                      .   ..............++.  +...   ...+.+|+.+||+.||++||     |++|+++|+|+..
T Consensus       238 ~---~~~~~i~~~~~~~~~~~--~~~~---s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~  297 (322)
T d1vzoa_         238 K---NSQAEISRRILKSEPPY--PQEM---SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQK  297 (322)
T ss_dssp             C---CCHHHHHHHHHHCCCCC--CTTS---CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             H---HHHHHHHHhcccCCCCC--cccC---CHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcC
Confidence            1   11112222222222221  1111   22357899999999999999     5899999999976

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.2e-26  Score=153.90  Aligned_cols=128  Identities=22%  Similarity=0.266  Sum_probs=94.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc-CCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG-KHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g-~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||+++.+......  .....+++.|++||.+.+..++.++|+||+|+++|||++| .+||.    
T Consensus       162 ~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~----  237 (308)
T d1p4oa_         162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ----  237 (308)
T ss_dssp             GGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT----
T ss_pred             CceeecCCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCC----
Confidence            5999999999999999999866543222  2234578999999999999899999999999999999998 46765    


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                         ................ ++.+..+..   .+.+++.+||+.||++|||+++|++++...
T Consensus       238 ---~~~~~~~~~~i~~~~~-~~~p~~~~~---~l~~li~~cl~~~P~~RPs~~~il~~L~~~  292 (308)
T d1p4oa_         238 ---GLSNEQVLRFVMEGGL-LDKPDNCPD---MLFELMRMCWQYNPKMRPSFLEIISSIKEE  292 (308)
T ss_dssp             ---TSCHHHHHHHHHTTCC-CCCCTTCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred             ---CCCHHHHHHHHHhCCC-CCCcccchH---HHHHHHHHHcCCChhHCcCHHHHHHHHHHh
Confidence               2222333333333322 222222222   357899999999999999999999987544

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-26  Score=152.28  Aligned_cols=128  Identities=23%  Similarity=0.332  Sum_probs=95.0

Q ss_pred             CceeecCCCceEEcccccceeccCCCC--ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSS--NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +|||++.++.+||+|||.++.......  ......+++.|+|||.+.++.++.++||||+|+++|+|++ |.+||...  
T Consensus       164 ~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~--  241 (299)
T d1fgka_         164 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV--  241 (299)
T ss_dssp             GGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC--
T ss_pred             cceeecCCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCC--
Confidence            599999999999999999987654322  2233567889999999999999999999999999999997 68887521  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLIT  139 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~  139 (160)
                           ... .....+.....++.+.....   .+.+|+.+||+.||.+|||+++|++.+...
T Consensus       242 -----~~~-~~~~~i~~~~~~~~p~~~~~---~l~~li~~cl~~dP~~Rps~~eil~~L~~i  294 (299)
T d1fgka_         242 -----PVE-ELFKLLKEGHRMDKPSNCTN---ELYMMMRDCWHAVPSQRPTFKQLVEDLDRI  294 (299)
T ss_dssp             -----CHH-HHHHHHHTTCCCCCCSSCCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             -----CHH-HHHHHHHcCCCCCCCccchH---HHHHHHHHHccCCHhHCcCHHHHHHHHHHH
Confidence                 122 22233333333333332222   357899999999999999999999987543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=154.00  Aligned_cols=139  Identities=22%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccccCC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSSLSS   80 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~~   80 (160)
                      +|||++.++.+|++|||.++...... ......+|+.|+|||++.+..++.++||||+||++++|++|.+||........
T Consensus       148 ~Nil~~~~~~~kl~df~~~~~~~~~~-~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~~~~~  226 (355)
T d2b1pa1         148 SNIVVKSDCTLKILDFGLARTAGTSF-MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQ  226 (355)
T ss_dssp             GGEEECTTCCEEECCCCC----------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             cccccccccceeeechhhhhcccccc-ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCCCHHHH
Confidence            59999999999999999987654332 23345688999999999988899999999999999999999999852211000


Q ss_pred             ---------------CCCchhhHHHhhhcC---------------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHH
Q 040414           81 ---------------SSDPKIMLIDVLDQR---------------LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQ  130 (160)
Q Consensus        81 ---------------~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~  130 (160)
                                     ...............               ...............+.+|+.+||+.||++|||++
T Consensus       227 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~  306 (355)
T d2b1pa1         227 WNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVD  306 (355)
T ss_dssp             HHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHH
T ss_pred             HHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHH
Confidence                           000000111111111               11111222333445678999999999999999999


Q ss_pred             HHHHHHhhhc
Q 040414          131 YVSQEFLITR  140 (160)
Q Consensus       131 ~~~~~~~~~~  140 (160)
                      ++++|+|+..
T Consensus       307 elL~Hpw~~~  316 (355)
T d2b1pa1         307 DALQHPYINV  316 (355)
T ss_dssp             HHHTSTTTGG
T ss_pred             HHhcCcccCC
Confidence            9999999986

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.7e-26  Score=152.20  Aligned_cols=128  Identities=23%  Similarity=0.329  Sum_probs=94.3

Q ss_pred             CceeecCCCceEEcccccceeccCCCCc--cccccccccccCCcccccCCCCCCcCeeehHHHHHHHHh-cCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSN--RTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLM-GKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~--~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~-g~~~~~~~~~   77 (160)
                      +||+++.++.+|++|||.++........  .....+|+.|+|||++..+.++.++||||+|+++|+|++ |.++|...  
T Consensus       174 ~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~--  251 (311)
T d1t46a_         174 RNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM--  251 (311)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC--
T ss_pred             ccccccccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCC--
Confidence            5999999999999999999876543222  233567899999999998889999999999999999998 56665421  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLI  138 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~  138 (160)
                           .....+...+.....+..+.....   .+.+|+..||+.||++|||+++|++.+..
T Consensus       252 -----~~~~~~~~~i~~~~~~~~~~~~~~---~l~~Li~~cl~~dP~~RPs~~~il~~L~~  304 (311)
T d1t46a_         252 -----PVDSKFYKMIKEGFRMLSPEHAPA---EMYDIMKTCWDADPLKRPTFKQIVQLIEK  304 (311)
T ss_dssp             -----CSSHHHHHHHHHTCCCCCCTTSCH---HHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhcCCCCCCcccccH---HHHHHHHHHcCCChhHCcCHHHHHHHHHH
Confidence                 222333333333333333322222   35789999999999999999999987754

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8e-26  Score=154.40  Aligned_cols=139  Identities=20%  Similarity=0.207  Sum_probs=91.9

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccccC-CCCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTM-VMTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~-~~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++ .+||+|||+++...... ......+++.|+|||.+.+. .++.++||||+||++|+|++|.+||......
T Consensus       151 ~NILl~~~~~~~kl~DFG~a~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~  229 (350)
T d1q5ka_         151 QNLLLDPDTAVLKLCDFGSAKQLVRGE-PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV  229 (350)
T ss_dssp             GGEEECTTTCCEEECCCTTCEECCTTS-CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH
T ss_pred             ceEEEecCCCceeEecccchhhccCCc-ccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHH
Confidence            599999775 89999999998764432 33446788999999987654 5788999999999999999999999632211


Q ss_pred             CC--------CCCchhhHHHhh----hcCCCCC--CCH---HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           79 SS--------SSDPKIMLIDVL----DQRLPPP--VDQ---KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        79 ~~--------~~~~~~~~~~~~----~~~~~~~--~~~---~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      ..        +...........    ....+..  ...   ........+.+|+.+||..||++|||++|+++|+|+..
T Consensus       230 ~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~  308 (350)
T d1q5ka_         230 DQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDE  308 (350)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGG
T ss_pred             HHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcc
Confidence            00        000000000000    0000000  000   00001123578999999999999999999999999976

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=1.2e-25  Score=149.08  Aligned_cols=129  Identities=26%  Similarity=0.364  Sum_probs=85.3

Q ss_pred             CceeecCCCceEEcccccceeccCCC---CccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCccccccc
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADS---SNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDLLSS   77 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~---~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~~~~   77 (160)
                      +|||++.++..+++|||.++......   .......||+.|+|||++.+..++.++||||+||++|+|++|.+||...  
T Consensus       140 ~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~--  217 (277)
T d1o6ya_         140 ANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD--  217 (277)
T ss_dssp             GGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS--
T ss_pred             cccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc--
Confidence            59999999999999999987654322   1233457899999999999888899999999999999999999999622  


Q ss_pred             cCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCC-CHHHHHHHHh
Q 040414           78 LSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRP-TMQYVSQEFL  137 (160)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rp-s~~~~~~~~~  137 (160)
                           .........+.....++. .........+.+++.+||+.||++|| |+++++..+.
T Consensus       218 -----~~~~~~~~~~~~~~~~~~-~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~  272 (277)
T d1o6ya_         218 -----SPVSVAYQHVREDPIPPS-ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV  272 (277)
T ss_dssp             -----SHHHHHHHHHHCCCCCGG-GTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred             -----CHHHHHHHHHhcCCCCCc-hhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHH
Confidence                 223333333333222110 00001112357899999999999999 7787765544

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.6e-25  Score=149.51  Aligned_cols=134  Identities=19%  Similarity=0.152  Sum_probs=92.6

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+||+|||.++.............+++.|++||.+.... ++.++||||+||++++|++|..||.....  
T Consensus       130 ~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~--  207 (292)
T d1unla_         130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGND--  207 (292)
T ss_dssp             GGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSS--
T ss_pred             cccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCCCCCC--
Confidence            599999999999999999987765544444455777899999887665 57889999999999999999888631111  


Q ss_pred             CCCCchhhHHHh--hhcC----------------------CCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHH
Q 040414           80 SSSDPKIMLIDV--LDQR----------------------LPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQE  135 (160)
Q Consensus        80 ~~~~~~~~~~~~--~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~  135 (160)
                          ........  ....                      ...............+.+|+.+||+.||.+|||++|+++|
T Consensus       208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~H  283 (292)
T d1unla_         208 ----VDDQLKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQH  283 (292)
T ss_dssp             ----HHHHHHHHHHHHCCCCTTTCTTGGGSTTCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred             ----HHHHHHHHHhhcCCCChhhhhhhhhcccccccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence                00000000  0000                      0000000011112235789999999999999999999999


Q ss_pred             Hhhhc
Q 040414          136 FLITR  140 (160)
Q Consensus       136 ~~~~~  140 (160)
                      +|+.+
T Consensus       284 p~f~~  288 (292)
T d1unla_         284 PYFSD  288 (292)
T ss_dssp             GGGSS
T ss_pred             hhhcC
Confidence            99965

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=5.2e-25  Score=150.92  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=91.1

Q ss_pred             CceeecCCCc------eEEcccccceeccCCCCccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCCcccc
Q 040414            1 NNIILNSNLE------AFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKHPRDL   74 (160)
Q Consensus         1 ~nill~~~~~------~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~~~~~   74 (160)
                      +|||++.++.      ++++|||.+......   .....+++.|+|||++.+..++.++|+||+||++++|++|+.||..
T Consensus       155 ~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~  231 (362)
T d1q8ya_         155 ENVLMEIVDSPENLIQIKIADLGNACWYDEH---YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  231 (362)
T ss_dssp             GGEEEEEEETTTTEEEEEECCCTTCEETTBC---CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             hHeeeeccCcccccceeeEeecccccccccc---cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCC
Confidence            5999986553      899999998764432   2345689999999999988889999999999999999999999863


Q ss_pred             ccccCCCCCchhhHHH---hhh-----------------------cCCCC-C-CC---------HHHHHHHHHHHHHHHh
Q 040414           75 LSSLSSSSDPKIMLID---VLD-----------------------QRLPP-P-VD---------QKVIQDILLASTISFA  117 (160)
Q Consensus        75 ~~~~~~~~~~~~~~~~---~~~-----------------------~~~~~-~-~~---------~~~~~~~~~~~~l~~~  117 (160)
                      ........ .......   .+.                       ..... . ..         .........+.+|+.+
T Consensus       232 ~~~~~~~~-~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~  310 (362)
T d1q8ya_         232 DEGHSYTK-DDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSP  310 (362)
T ss_dssp             -------C-HHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGG
T ss_pred             Cccccccc-hhHHHHHHHHHhCCCCHHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHHHH
Confidence            32211100 0000000   000                       00000 0 00         0011233456899999


Q ss_pred             hhccCCCCCCCHHHHHHHHhhhcc
Q 040414          118 CLQSNPKSRPTMQYVSQEFLITRK  141 (160)
Q Consensus       118 cl~~dp~~Rps~~~~~~~~~~~~~  141 (160)
                      ||+.||.+|||++++++|+||++.
T Consensus       311 mL~~dP~~Rpta~e~L~Hp~f~~~  334 (362)
T d1q8ya_         311 MLQLDPRKRADAGGLVNHPWLKDT  334 (362)
T ss_dssp             GGCSSTTTCBCHHHHHTCGGGTTC
T ss_pred             HCCCChhHCcCHHHHhcCcccCCC
Confidence            999999999999999999999853

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.90  E-value=3e-25  Score=150.37  Aligned_cols=137  Identities=14%  Similarity=0.130  Sum_probs=91.3

Q ss_pred             CceeecCCC-ceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCcccccccc
Q 040414            1 NNIILNSNL-EAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSL   78 (160)
Q Consensus         1 ~nill~~~~-~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~   78 (160)
                      +|||++.++ .+||+|||+++...... ......+|+.|+|||.+.+.. ++.++||||+||+++++++|..||......
T Consensus       158 ~NILi~~~~~~vkl~DFG~a~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~~~~  236 (328)
T d3bqca1         158 HNVMIDHEHRKLRLIDWGLAEFYHPGQ-EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDN  236 (328)
T ss_dssp             GGEEEETTTTEEEECCGGGCEECCTTC-CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSH
T ss_pred             cceEEcCCCCeeeecccccceeccCCC-cccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCCchh
Confidence            599998655 68999999998654332 334466899999999987654 688899999999999999999998532110


Q ss_pred             CCCCCchhhHHH------------------------hhhcCCCCC-----CCHHHHHHHHHHHHHHHhhhccCCCCCCCH
Q 040414           79 SSSSDPKIMLID------------------------VLDQRLPPP-----VDQKVIQDILLASTISFACLQSNPKSRPTM  129 (160)
Q Consensus        79 ~~~~~~~~~~~~------------------------~~~~~~~~~-----~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~  129 (160)
                      ..   .......                        .........     ...........+.+|+.+||+.||++|||+
T Consensus       237 ~~---~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta  313 (328)
T d3bqca1         237 YD---QLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTA  313 (328)
T ss_dssp             HH---HHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             HH---HHHHHHHHHCCchhhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHHHHHccCChhHCcCH
Confidence            00   0000000                        000000000     000001112235789999999999999999


Q ss_pred             HHHHHHHhhhcc
Q 040414          130 QYVSQEFLITRK  141 (160)
Q Consensus       130 ~~~~~~~~~~~~  141 (160)
                      +++++|+||...
T Consensus       314 ~e~L~Hp~F~~v  325 (328)
T d3bqca1         314 REAMEHPYFYTV  325 (328)
T ss_dssp             HHHHTSGGGTTS
T ss_pred             HHHhcCcccCCC
Confidence            999999999864

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-25  Score=151.08  Aligned_cols=138  Identities=20%  Similarity=0.209  Sum_probs=88.5

Q ss_pred             CceeecCCCceEEcccccceeccCCCCccccccccccccCCcccccCC-CCCCcCeeehHHHHHHHHhcCCccccccccC
Q 040414            1 NNIILNSNLEAFVADFGTARLLHADSSNRTLLAGTYGYIAPELAYTMV-MTEKCDVYSFGVVTLEVLMGKHPRDLLSSLS   79 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~-~~~~~di~s~G~~~~~l~~g~~~~~~~~~~~   79 (160)
                      +|||++.++.+|++|||.+......   .....|++.|+|||.+.+.. ++.++||||+||++|+|++|.+||.......
T Consensus       150 ~NILi~~~~~~kl~dfg~a~~~~~~---~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~  226 (348)
T d2gfsa1         150 SNLAVNEDCELKILDFGLARHTDDE---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHID  226 (348)
T ss_dssp             GGEEECTTCCEEECCC----CCTGG---GSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ccccccccccccccccchhcccCcc---cccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHH
Confidence            5999999999999999998754322   23456888999999877654 5788999999999999999999986322100


Q ss_pred             C----------------CCCchhhHHHhhhcCCC-CCCCH--HHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHhhhc
Q 040414           80 S----------------SSDPKIMLIDVLDQRLP-PPVDQ--KVIQDILLASTISFACLQSNPKSRPTMQYVSQEFLITR  140 (160)
Q Consensus        80 ~----------------~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~~~~~  140 (160)
                      .                ................. +....  ........+.+|+.+||+.||.+|||++++++|+|+..
T Consensus       227 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~  306 (348)
T d2gfsa1         227 QLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQ  306 (348)
T ss_dssp             HHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTT
T ss_pred             HHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcchhhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCC
Confidence            0                00000000000000000 00000  00011234578999999999999999999999999986


Q ss_pred             c
Q 040414          141 K  141 (160)
Q Consensus       141 ~  141 (160)
                      -
T Consensus       307 ~  307 (348)
T d2gfsa1         307 Y  307 (348)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=4.5e-25  Score=147.74  Aligned_cols=138  Identities=15%  Similarity=0.239  Sum_probs=89.2

Q ss_pred             CceeecC---CCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhcCC
Q 040414            1 NNIILNS---NLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMGKH   70 (160)
Q Consensus         1 ~nill~~---~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g~~   70 (160)
                      +|||++.   +..+||+|||+++.+.....       ......||+.|+|||.+.+..++.++|+||+|+++|+|++|..
T Consensus       132 ~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~  211 (299)
T d1ckia_         132 DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL  211 (299)
T ss_dssp             GGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCC
Confidence            5898753   45799999999997654321       1234578999999999998889999999999999999999999


Q ss_pred             ccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHH---HHHHhhhccC
Q 040414           71 PRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYV---SQEFLITRKT  142 (160)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~---~~~~~~~~~~  142 (160)
                      ||...........    ...........+...........+.+++..||+.||++||+++++   +++++.....
T Consensus       212 P~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~~~  282 (299)
T d1ckia_         212 PWQGLKAATKRQK----YERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF  282 (299)
T ss_dssp             TTCCCC-----------HHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHHTC
T ss_pred             cccccchHHHHHH----HHHhhcccCCCChhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHcCC
Confidence            9974332221111    111111100000000000011235789999999999999998755   5666654433

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.87  E-value=1.3e-23  Score=140.14  Aligned_cols=132  Identities=16%  Similarity=0.207  Sum_probs=87.6

Q ss_pred             CceeecC-----CCceEEcccccceeccCCCC-------ccccccccccccCCcccccCCCCCCcCeeehHHHHHHHHhc
Q 040414            1 NNIILNS-----NLEAFVADFGTARLLHADSS-------NRTLLAGTYGYIAPELAYTMVMTEKCDVYSFGVVTLEVLMG   68 (160)
Q Consensus         1 ~nill~~-----~~~~kl~d~g~~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~di~s~G~~~~~l~~g   68 (160)
                      +|||++.     ++.+||+|||+++.......       ......||+.|+|||.+.+..++.++|+||+|+++|+|++|
T Consensus       130 ~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg  209 (293)
T d1csna_         130 DNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG  209 (293)
T ss_dssp             GGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             cceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhC
Confidence            5999974     57799999999987643211       12345799999999999988899999999999999999999


Q ss_pred             CCccccccccCCCCCchhhHHHhhhcCCCCCCCHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHH
Q 040414           69 KHPRDLLSSLSSSSDPKIMLIDVLDQRLPPPVDQKVIQDILLASTISFACLQSNPKSRPTMQYVSQEF  136 (160)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~cl~~dp~~Rps~~~~~~~~  136 (160)
                      ..||......    ................+...........+.+++..|+..+|++||+.+.+.+.+
T Consensus       210 ~~Pf~~~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~~l  273 (293)
T d1csna_         210 SLPWQGLKAA----TNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLF  273 (293)
T ss_dssp             SCTTSSCCSC----CHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHH
T ss_pred             CCcCCCccch----hHHHHHHHHHhccCCCChHHhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHHHH
Confidence            9999632211    111111111111110100000000112356788999999999999988776643

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.11  E-value=0.014  Score=34.88  Aligned_cols=22  Identities=14%  Similarity=0.298  Sum_probs=17.8

Q ss_pred             CceeecCCCceEEcccccceecc
Q 040414            1 NNIILNSNLEAFVADFGTARLLH   23 (160)
Q Consensus         1 ~nill~~~~~~kl~d~g~~~~~~   23 (160)
                      +|||++.++ ++|+|||.+....
T Consensus       132 ~NILv~~~~-~~liDFG~a~~~~  153 (191)
T d1zara2         132 YNVLVSEEG-IWIIDFPQSVEVG  153 (191)
T ss_dssp             TSEEEETTE-EEECCCTTCEETT
T ss_pred             hheeeeCCC-EEEEECCCcccCC
Confidence            699999654 8899999987643