BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040415
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 275 bits (702), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 145/346 (41%), Positives = 211/346 (60%), Gaps = 10/346 (2%)
Query: 33 VKAAYW-PSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHH 91
VKA+YW P A FP + I+++LFTH++ AF N+ T + + ++ + S FT T+
Sbjct: 5 VKASYWFP--ASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQR 62
Query: 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP 151
+NP VKTL SIGG AD + + MAS+P SR++FI SSI VAR +GF GLDLDWE+P +
Sbjct: 63 RNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSA 122
Query: 152 KEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLD 211
EM + G LL EWR A+ EA ++ +P LL AAV++S +++ YPV ++ +LD
Sbjct: 123 TEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSV----LYPVSAVASSLD 178
Query: 212 WINAMCFDYHG-GWDNTTTGAHAALYDP-KSNLSTSYGLKSWLRAGVHRSKLVMGLPLYG 269
W+N M +D++G GW TG AAL+DP + S G +SW++AG+ K V+G P YG
Sbjct: 179 WVNLMAYDFYGPGWSR-VTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYG 237
Query: 270 RSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGST 329
+W+L + NSH +P G + + Q+ +F NGAT VY+ V Y +AG+
Sbjct: 238 YAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTN 297
Query: 330 WIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVARAW 375
WIGYDD S K+ +A+ GL GYF W + D+ +S ++AW
Sbjct: 298 WIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAW 343
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 255 bits (652), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 202/347 (58%), Gaps = 9/347 (2%)
Query: 33 VKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHK 92
VK YW + I++ LFTH++ AF N + I FT+T+ K
Sbjct: 4 VKGGYWFK-DSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRK 62
Query: 93 NPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
NP VKT SI G A+++ + MA P SR++FI SSI +AR+ GF GLDLDWE+P +
Sbjct: 63 NPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA 122
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDW 212
+M +LG LL+EWR A+ EA+ + + LL TAAV S + YPV S+ RNLDW
Sbjct: 123 DMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLN----YPVESLARNLDW 178
Query: 213 INAMCFDYHG-GWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRS 271
IN M +D++G W + T +HA L+DP +++S S G+ +W++AGV KLV+G+P YG +
Sbjct: 179 INLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYA 238
Query: 272 WKLKDPNSHEIGSPAV---DVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGS 328
W+L + N H + +PA +VG D G M + ++ ++ + AT VY+ V Y ++GS
Sbjct: 239 WRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGS 298
Query: 329 TWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVARAW 375
WI YDD + K+ + + GL GYF W ++ D W +S ++ W
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTW 345
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 254 bits (648), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 202/347 (58%), Gaps = 9/347 (2%)
Query: 33 VKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHK 92
VK YW + I++ LFTH++ AF N + I FT+T+ K
Sbjct: 4 VKGGYWFK-DSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRK 62
Query: 93 NPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
NP VKT SI G A+++ + MA P SR++FI SSI +AR+ GF GLDLDW++P +
Sbjct: 63 NPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAA 122
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDW 212
+M +LG LL+EWR A+ EA+ + + LL TAAV S + YPV S+ RNLDW
Sbjct: 123 DMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLN----YPVESLARNLDW 178
Query: 213 INAMCFDYHG-GWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRS 271
IN M +D++G W + T +HA L+DP +++S S G+ +W++AGV KLV+G+P YG +
Sbjct: 179 INLMAYDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYA 238
Query: 272 WKLKDPNSHEIGSPAV---DVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGS 328
W+L + N H + +PA +VG D G M + ++ ++ + AT VY+ V Y ++GS
Sbjct: 239 WRLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGS 298
Query: 329 TWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVARAW 375
WI YDD + K+ + + GL GYF W ++ D W +S ++ W
Sbjct: 299 NWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTW 345
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 181/350 (51%), Gaps = 31/350 (8%)
Query: 36 AYWPSWAESFP------PSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ P P IN L TH+ YAF M NN ++ T Q N
Sbjct: 5 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L +KN +KTL +IGG T+ F M S P +RQ FI S I+ R++ FDGLD DWE+P
Sbjct: 62 LKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 121
Query: 149 QN----PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ P++ H +L+ E R A E+EAK +P L+ TAAV ++++ Y +
Sbjct: 122 GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAG----ISNIQSGYEIP 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALY----DPKSN--LSTSYGLKSWLRAGVHR 258
+++ LD+I+ M +D HG W+ TG ++ LY D SN L+ Y + W G
Sbjct: 178 QLSQYLDYIHVMTYDLHGSWEG-YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-----DKGLMQFVQVGEFNRMNGATV 313
KL++G P YG ++ L +P++ IG+P GP + G+ + ++ F + NGAT
Sbjct: 237 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLK-NGATQ 295
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+D Y++ G+ W+GYD+ S IK + + G WA+ D+
Sbjct: 296 GWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 178 bits (451), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/350 (33%), Positives = 181/350 (51%), Gaps = 31/350 (8%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P IN L TH+ YAF M NN ++ T Q N
Sbjct: 9 CYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAFN---G 65
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L +KN +KTL +IGG T+ F M S P +RQ FI S I+ R++ FDGLD DWE+P
Sbjct: 66 LKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYP 125
Query: 149 QN----PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ P++ H +L+ E R A E+EAK +P L+ TAAV ++++ Y +
Sbjct: 126 GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAG----ISNIQSGYEIP 181
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALY----DPKSN--LSTSYGLKSWLRAGVHR 258
+++ LD+I+ M +D HG W+ TG ++ LY D SN L+ Y + W G
Sbjct: 182 QLSQYLDYIHVMTYDLHGSWEG-YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPA 240
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-----DKGLMQFVQVGEFNRMNGATV 313
KL++G P YG ++ L +P++ IG+P GP + G+ + ++ F + NGAT
Sbjct: 241 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLK-NGATQ 299
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+D Y++ G+ W+GYD+ S IK + + G WA+ D+
Sbjct: 300 GWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 178/350 (50%), Gaps = 33/350 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P ++ +L TH+ YAF M N+ ++ T Q N
Sbjct: 5 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L NP +KTL +IGG T F DM + +RQ F++S+I RK+ FDGLDLDWE+P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 149 QNPK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ + L+ + A ++EA+ + + LL +AAV + A Y V
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAG----YEVD 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK------SNLSTSYGLKSWLRAGVHR 258
I +NLD++N M +D+HG W+ TG ++ LY + ++L+ ++ WL+ G
Sbjct: 178 KIAQNLDFVNLMAYDFHGSWEK-VTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
SKL++G+P YGRS+ L + +G+PA G PG + G++ + +V + GAT
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATK 293
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y F + W+G+DD S K+ + + GL G WAL D+
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 178/350 (50%), Gaps = 33/350 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P ++ +L TH+ YAF M N+ ++ T Q N
Sbjct: 5 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L NP +KTL +IGG T F DM + +RQ F++S+I RK+ FDGLDLDWE+P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 149 QNPK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ + L+ + A ++EA+ + + LL +AAV + A Y V
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAG----YEVD 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK------SNLSTSYGLKSWLRAGVHR 258
I +NLD++N M +D+HG W+ TG ++ LY + ++L+ ++ WL+ G
Sbjct: 178 KIAQNLDFVNLMAYDFHGSWEK-VTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
SKL++G+P YGRS+ L + +G+PA G PG + G++ + +V + GAT
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATK 293
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y F + W+G+DD S K+ + + GL G WAL D+
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 178/350 (50%), Gaps = 33/350 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P ++ +L TH+ YAF M N+ ++ T Q N
Sbjct: 5 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L NP +KTL +IGG T F DM + +RQ F++S+I RK+ FDGLDLDWE+P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 149 QNPK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ + L+ + A ++EA+ + + LL +AAV + A Y V
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAG----YEVD 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK------SNLSTSYGLKSWLRAGVHR 258
I +NLD++N M +D+HG W+ TG ++ LY + ++L+ ++ WL+ G
Sbjct: 178 KIAQNLDFVNLMAYDFHGSWEK-VTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
SKL++G+P YGRS+ L + +G+PA G PG + G++ + +V + GAT
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATK 293
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y F + W+G+DD S K+ + + GL G WAL D+
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 177/350 (50%), Gaps = 33/350 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P ++ +L TH+ YAF M N+ ++ T Q N
Sbjct: 5 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L NP +KTL +IGG T F DM + +RQ F++S+I RK+ FDGLDLDWE+P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 149 QNPK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ + L+ + A ++EA+ + + LL +AAV + A Y V
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAG----YEVD 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK------SNLSTSYGLKSWLRAGVHR 258
I +NLD++N M +D+HG W+ TG ++ LY + ++L+ ++ WL G
Sbjct: 178 KIAQNLDFVNLMAYDFHGSWEK-VTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
SKL++G+P YGRS+ L + +G+PA G PG + G++ + +V + GAT
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATK 293
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y F + W+G+DD S K+ + + GL G WAL D+
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 114/360 (31%), Positives = 180/360 (50%), Gaps = 33/360 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTTT 88
Y+ +WA+ F P ++ +L TH+ YAF M N+ ++ T Q N
Sbjct: 5 CYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWNDETLYQEFN---G 61
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L NP +KTL +IGG T F DM + +RQ F++S+I RK+ FDGLDLDWE+P
Sbjct: 62 LKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYP 121
Query: 149 QNPK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204
+ + L+ + A ++EA+ + + LL +AAV + A Y V
Sbjct: 122 GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAG----YEVD 177
Query: 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK------SNLSTSYGLKSWLRAGVHR 258
I +NLD++N M +D+HG W+ TG ++ LY + ++L+ ++ WL+ G
Sbjct: 178 KIAQNLDFVNLMAYDFHGSWEK-VTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPA 236
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
SKL++G+P YGRS+ L + +G+PA G PG + G++ + +V + GAT
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATK 293
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVAR 373
+ Y F + W+G+DD S K+ + + GL G WAL D+ S R
Sbjct: 294 QRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 114/351 (32%), Positives = 170/351 (48%), Gaps = 33/351 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAF--LMPNNVTYKFNIDNSTAIQLSNFTT 87
Y+ SWA+ SF P I+ L TH+ YAF + N +TY D L+
Sbjct: 5 CYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRDYEALNG--- 61
Query: 88 TLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEF 147
L KN +KTL +IGG + F M S P++RQ FI S I R++ FDGL+LDW++
Sbjct: 62 -LKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQY 120
Query: 148 PQN----PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPV 203
P + PK+ H +L+ E R A E E+ P LL T+ +D + Y +
Sbjct: 121 PGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV----IKSGYKI 176
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKS------WLRAGVH 257
++++LD+I M +D H D TG ++ LY ++ S L W G
Sbjct: 177 PELSQSLDYIQVMTYDLHDPKDG-YTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAA 235
Query: 258 RSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDK-----GLMQFVQVGEFNRMNGAT 312
KL++G P YG ++ L DP+ IG+P + GP K GL+ + +V F GAT
Sbjct: 236 SEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLN-EGAT 294
Query: 313 VVYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
V+D Y++ G+ W+GYD+ S +K + + L G W L D+
Sbjct: 295 EVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 180/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTALVKEMKAEFAREAQAGTE-RLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ S+ S+ Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + ++G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSFTLASSKT-DVGAPISGPGIPGRFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 179/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG + F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL A + + R Y + I
Sbjct: 120 YPGWRDKRH-LTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKI-----AIDRGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HGGW T G H+ L+ S+ S+ Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGGWRG-TVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L +S +G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSYTLAS-SSTRVGAPISGPGIPGQFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 155 bits (391), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 179/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTTLVKEMKAEFIREAQAGTE-QLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALY----DPKSNLSTS-YGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ D S S + Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + ++G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSFTLASSKT-DVGAPVSGPGIPGRFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 155 bits (391), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/347 (33%), Positives = 180/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTTLVKEMKAEFIREAQAGTE-QLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALY----DPKSNLSTS-YGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ D S S + Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + ++G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSFTLASSKT-DVGAPVSGPGVPGRFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 154 bits (389), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 182/350 (52%), Gaps = 40/350 (11%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG + F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAV---YFSVDFFVADVYRKYPV 203
+P + H L L+ E + REA+A + LL +AAV ++D R Y +
Sbjct: 120 YPGWRDKRH-LTTLVKEMKAEFVREAQAGTE-QLLLSAAVPAGKIAID-------RGYDI 170
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHR 258
I+R+LD+I+ + +D+HGGW T G H+ L+ S+ S+ Y + LR G
Sbjct: 171 AQISRHLDFISLLTYDFHGGW-RGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPA 229
Query: 259 SKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATV 313
+KLVMG+P +GRS+ L + ++G+P G PG +KG + + ++ +F ++GAT
Sbjct: 230 NKLVMGIPTFGRSYTLASSKT-DVGAPISGPGIPGQFTKEKGTLAYYEICDF--LHGATT 286
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 287 HRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/347 (32%), Positives = 179/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTTLVKEMKAEFIREAQAGTE-QLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ + + S+ Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +G+S+ L + ++G+P G PG +KG++ + ++ +F + GAT
Sbjct: 233 VMGIPTFGKSFTLASSKT-DVGAPVSGPGIPGQFTKEKGILAYYEICDF--LQGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 154 bits (388), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTALVKEMKAEFAREAQAGTE-RLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ S+ S+ Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + + G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSFTLASSKT-DGGAPISGPGIPGRFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 116/350 (33%), Positives = 176/350 (50%), Gaps = 39/350 (11%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFLMPNNV---TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P A++ L THI Y+F +N T+++N + L
Sbjct: 5 CYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHIDTWEWN-----DVTLYGML 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG + F +AS+ +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L+ E + +EA+ + LL +AA+ S D Y + I
Sbjct: 120 YPGRRDKQH-FTTLIKEMKAEFIKEAQPG-KKQLLLSAAL--SAGKVTID--SSYDIAKI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLS------TSYGLKSWLRAGVHRSK 260
+++LD+I+ M +D+HG W TTG H+ L+ + + S T Y + LR G SK
Sbjct: 174 SQHLDFISIMTYDFHGAW-RGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPASK 232
Query: 261 LVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-------DKGLMQFVQVGEFNRMNGATV 313
LVMG+P +GRS+ L S E G A GPG + G + + ++ +F R GATV
Sbjct: 233 LVMGIPTFGRSFTLA---SSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR--GATV 287
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+GYDD+ S K+ + + L G WAL D+
Sbjct: 288 HRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDD 337
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL +AAV S D R Y + I
Sbjct: 120 YPGRRDKRH-LTALVKEMKAEFAREAQAGTE-RLLLSAAV--SAGKIAID--RGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLST-----SYGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ S+ S+ Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PG----DKGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + + G+P G PG +KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSFTLASSKT-DGGAPISGPGIPGRFTKEKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 151 bits (382), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 177/347 (51%), Gaps = 34/347 (9%)
Query: 36 AYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNV--TYKFNIDNSTAIQLSNFT 86
Y+ SW++ S P AI+ L TH+ Y+F + NN T+++N + L +
Sbjct: 5 CYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEIDTWEWN-----DVTLYDTL 59
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TL ++NP +KTL S+GG + F +AS +SR+ FI S R GFDGLDL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 147 FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+P + H L L+ E + REA+A + LL A + + R Y + I
Sbjct: 120 WPGWRDKRH-LTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKI-----AIDRGYDIAQI 173
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALY----DPKSNLSTS-YGLKSWLRAGVHRSKL 261
+R+LD+I+ + +D+HG W T G H+ L+ D S S + Y + LR G +KL
Sbjct: 174 SRHLDFISLLTYDFHGAW-RQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKL 232
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVG-PGD----KGLMQFVQVGEFNRMNGATVVYD 316
VMG+P +GRS+ L + ++G+P G PG KG++ + ++ +F ++GAT
Sbjct: 233 VMGIPTFGRSYTLASSKT-DVGAPISGPGIPGRFTKWKGILAYYEICDF--LHGATTHRF 289
Query: 317 VESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+ YDD+ S K + + L G WAL D+
Sbjct: 290 RDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 164/350 (46%), Gaps = 34/350 (9%)
Query: 35 AAYWPSWAE------SFPPSAINTNLFTHIYYAFL-MPNNVTYKFNIDNSTAIQLSNFTT 87
Y+ +W++ F P I+ L +H+ Y+F + NN K I + + + L
Sbjct: 5 VCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENN---KVIIKDKSEVMLYQTIN 61
Query: 88 TLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEF 147
+L KNP +K L SIGG + F M SR FI+S I R FDGLD+ W +
Sbjct: 62 SLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIY 121
Query: 148 PQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSIN 207
P + H +L+ E A +++ + + LL TA V + Y V +
Sbjct: 122 PDQKENTH-FTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQM----IDNSYQVEKLA 176
Query: 208 RNLDWINAMCFDYHGGWDN-TTTGAHAALYD------PKSNLSTSYGLKSWLRAGVHRSK 260
++LD+IN + FD+HG W+ TG ++ L P S + Y + W+ G+ K
Sbjct: 177 KDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEK 236
Query: 261 LVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-------DKGLMQFVQVGEFNRMNGATV 313
+VMG+P YG S+ L + +G+PA GPG G + + ++ +F + GA +
Sbjct: 237 VVMGIPTYGHSFTLASAET-TVGAPA--SGPGAAGPITESSGFLAYYEICQF--LKGAKI 291
Query: 314 VYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+ Y+ G+ W+GYDD S K+ F + L L G W++ D+
Sbjct: 292 TRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/372 (27%), Positives = 171/372 (45%), Gaps = 43/372 (11%)
Query: 20 IAATGHITASPPPVKAAYWPSWA---ESFPPSAINTNLFTHIYYAF--LMPNNVTYK--- 71
+A+T T + + A Y+ +W +F P+ + + H+ Y+F L + Y
Sbjct: 9 LASTDLSTRATGSINAVYFTNWGIYGRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDT 68
Query: 72 ------------FNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHP 119
+N + A L N +K + SIGG T+ F AS
Sbjct: 69 YADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWSTN-FPAAASTE 127
Query: 120 RSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPP 179
+R F +++E + +GFDG+D+DWE+P + + +++ LLL R L+ + AT
Sbjct: 128 ATRATFAKTAVEFMKDWGFDGIDVDWEYPASETDANNMVLLLQRVRQELDSYS-ATYANG 186
Query: 180 LLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK 239
F ++ +V + +GS+ LD IN M +DY G WD + +G LY
Sbjct: 187 YHFQLSIAAPAGPSHYNVLKLAQLGSV---LDNINLMAYDYAGSWD-SVSGHQTNLYPST 242
Query: 240 SN-----LSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-- 292
SN ST + +++ AGV SK+++G+P+YGR++ D G P +G G
Sbjct: 243 SNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD----GPGKPYSTIGEGSW 298
Query: 293 DKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGS--TWIGYDDEISATIKIGFAQALG 350
+ G+ + + + GATV+ D + + YS+ S T I YD K+ +A+ LG
Sbjct: 299 ESGIWDYKVLPKA----GATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLG 354
Query: 351 LRGYFFWALSYD 362
L G FW S D
Sbjct: 355 LGGSMFWEASAD 366
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 106/398 (26%), Positives = 165/398 (41%), Gaps = 78/398 (19%)
Query: 36 AYWPSWA---ESFPPSAINTNLFTHIYYAFL--------------MPNNVTYKFNIDNST 78
Y+PSWA ++ + I+ THI YAF PN VT+ + S
Sbjct: 16 GYYPSWAAYGRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWTCQNEKSQ 75
Query: 79 AIQLSNFT------------------------------TTLHHKNPPVKTLFSIGGAGAD 108
I + N T L NP +KT+ S+GG
Sbjct: 76 TINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIISVGGWTW- 134
Query: 109 TSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP---------QNPKEMHDLGL 159
++ F D+A+ +R+ F +S+++ RK+ FDG+DLDWE+P + P++ + L
Sbjct: 135 SNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRPEDKQNYTL 194
Query: 160 LLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFD 219
LL + R L+ A A L T A S + + I +DWIN M +D
Sbjct: 195 LLSKIREKLD-AAGAVDGKKYLLTIASGASATYAA-----NTELAKIAAIVDWINIMTYD 248
Query: 220 YHGGWDNTTTGAHAALYDPKSN---------LSTSYGLKSWLRAGVHRSKLVMGLPLYGR 270
++G W + YDP ++ + + G + L AGV +KLV+G+P YGR
Sbjct: 249 FNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGR 308
Query: 271 SWK---LKDPNSHEIGSPAVDVGPGDKGLMQFVQV-GEFNRMNGATVVYDVESVSAYSFA 326
W ++ + VG + G F + + NG T ++ + Y +
Sbjct: 309 GWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNGYTRYWNDTAKVPYLYN 368
Query: 327 GST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYD 362
S +I YDD S K + ++ GL G FW LS D
Sbjct: 369 ASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/285 (32%), Positives = 149/285 (52%), Gaps = 27/285 (9%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L +N +K L SIGG + F AS R+ F +++++ + GFDGLD+DWE+P
Sbjct: 121 LKKQNRNLKVLLSIGGWTYSPN-FAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP 179
Query: 149 QNPKEMHDLGLLLDEWRLALE--REAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+N ++ +D LLL E R AL+ A A Q LL A+ D + + +
Sbjct: 180 ENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASP------AGPDKIKVLHLKDM 233
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSN-LSTSYGLKSWL---RA-GVHRSKL 261
++ LD+ N M +DY G + ++ +G A +Y+ SN LST + ++ L RA GV +K+
Sbjct: 234 DQQLDFWNLMAYDYAGSF-SSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKI 292
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG--DKGLMQFVQVGEFNRMNGAT--VVYDV 317
V+G+PLYGRS+ N+ G P VG G + G+ + + + GAT V+ D+
Sbjct: 293 VLGMPLYGRSFA----NTDGPGKPYNGVGQGSWENGVWDYKALPQA----GATEHVLPDI 344
Query: 318 ESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYD 362
+ +Y I YD+ A +K G+ ++LGL G +W S D
Sbjct: 345 MASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 147/285 (51%), Gaps = 27/285 (9%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148
L +N +K L SIGG + F AS R+ F +++++ + GFDGLD+DWE+P
Sbjct: 83 LKKQNRNLKVLLSIGGWTYSPN-FAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP 141
Query: 149 QNPKEMHDLGLLLDEWRLALE--REAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
+N ++ +D LLL E R AL+ A A Q LL A+ D + + +
Sbjct: 142 ENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASP------AGPDKIKVLHLKDM 195
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSN-LSTSYGLKSWLR----AGVHRSKL 261
++ LD+ N M +DY G + ++ +G A +Y+ SN LST + ++ L GV +K+
Sbjct: 196 DQQLDFWNLMAYDYAGSF-SSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKI 254
Query: 262 VMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG--DKGLMQFVQVGEFNRMNGAT--VVYDV 317
V+G+PLYGRS+ N+ G P VG G + G+ + + + GAT V+ D+
Sbjct: 255 VLGMPLYGRSFA----NTDGPGKPYNGVGQGSWENGVWDYKALPQA----GATEHVLPDI 306
Query: 318 ESVSAYSFAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYD 362
+ +Y I YD+ A +K G+ ++LGL G +W S D
Sbjct: 307 MASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/363 (27%), Positives = 161/363 (44%), Gaps = 43/363 (11%)
Query: 38 WPSWAESFPPSAINTNLFTHIYYAF--LMPNNVTY---------------KFNIDNSTAI 80
W + P + + FTHI YAF + P+ Y K++ +
Sbjct: 12 WAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVY 71
Query: 81 QLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDG 140
L N +KTL SIGG + F AS R+ F +S+++ + GFDG
Sbjct: 72 GCIKQMYLLKKNNRNLKTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDG 130
Query: 141 LDLDWEFPQNPKEMHDLGLLLDEWRLALER-EAKATCQPPLLFTAAVYFSVDFFVADVYR 199
+D+DWE+P++ K+ +D LLL R AL+ AK L T A Y
Sbjct: 131 IDIDWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAG-----PQNYN 185
Query: 200 KYPVGSINRNLDWINAMCFDYHGGWDNTT---TGAHAALYDPKSN-LSTSYGLKSWLRAG 255
K + +++ LD+ N M +D+ G WD + + + P+S S+ +K +++AG
Sbjct: 186 KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 256 VHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG--DKGLMQFVQVGEFNRMNGATV 313
V +K+V+G+PLYGR++ D IG+ VG G + G+ + + + GA V
Sbjct: 246 VPANKIVLGMPLYGRAFASTDG----IGTSFNGVGGGSWENGVWDYKDMPQ----QGAQV 297
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYD---NEWKIS 368
+ ++YS+ + I YD A K + G+ G +W S D NE +
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 369 TQV 371
T V
Sbjct: 358 TVV 360
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 43/363 (11%)
Query: 38 WPSWAESFPPSAINTNLFTHIYYAF--LMPNNVTY---------------KFNIDNSTAI 80
W + P + + FTHI YAF + P+ Y K++ +
Sbjct: 12 WAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVY 71
Query: 81 QLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDG 140
L N +KTL SIGG + F AS R+ F +S+++ + GFDG
Sbjct: 72 GCIKQMYLLKKNNRNLKTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDG 130
Query: 141 LDLDWEFPQNPKEMHDLGLLLDEWRLALER-EAKATCQPPLLFTAAVYFSVDFFVADVYR 199
+D+DW++P++ K+ +D LLL R AL+ AK L T A Y
Sbjct: 131 IDIDWQYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAG-----PQNYN 185
Query: 200 KYPVGSINRNLDWINAMCFDYHGGWDNTT---TGAHAALYDPKSN-LSTSYGLKSWLRAG 255
K + +++ LD+ N M +D+ G WD + + + P+S S+ +K +++AG
Sbjct: 186 KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 256 VHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG--DKGLMQFVQVGEFNRMNGATV 313
V +K+V+G+PLYGR++ D IG+ VG G + G+ + + + GA V
Sbjct: 246 VPANKIVLGMPLYGRAFASTDG----IGTSFNGVGGGSWENGVWDYKDMPQ----QGAQV 297
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYD---NEWKIS 368
+ ++YS+ + I YD A K + G+ G +W S D NE +
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 369 TQV 371
T V
Sbjct: 358 TVV 360
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 161/363 (44%), Gaps = 43/363 (11%)
Query: 38 WPSWAESFPPSAINTNLFTHIYYAF--LMPNNVTY---------------KFNIDNSTAI 80
W + P + + FTHI YAF + P+ Y K++ +
Sbjct: 12 WAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVY 71
Query: 81 QLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDG 140
L N +KTL SIGG + F AS R+ F +S+++ + GFDG
Sbjct: 72 GCIKQMYLLKKNNRNLKTLLSIGGWTYSPN-FKTPASTEEGRKKFADTSLKLMKDLGFDG 130
Query: 141 LDLDWEFPQNPKEMHDLGLLLDEWRLALER-EAKATCQPPLLFTAAVYFSVDFFVADVYR 199
+D++WE+P++ K+ +D LLL R AL+ AK L T A Y
Sbjct: 131 IDINWEYPEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPAG-----PQNYN 185
Query: 200 KYPVGSINRNLDWINAMCFDYHGGWDNTT---TGAHAALYDPKSN-LSTSYGLKSWLRAG 255
K + +++ LD+ N M +D+ G WD + + + P+S S+ +K +++AG
Sbjct: 186 KLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPESTPFSSDKAVKDYIKAG 245
Query: 256 VHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG--DKGLMQFVQVGEFNRMNGATV 313
V +K+V+G+PLYGR++ D IG+ VG G + G+ + + + GA V
Sbjct: 246 VPANKIVLGMPLYGRAFASTDG----IGTSFNGVGGGSWENGVWDYKDMPQ----QGAQV 297
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYD---NEWKIS 368
+ ++YS+ + I YD A K + G+ G +W S D NE +
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDKTGNESLVG 357
Query: 369 TQV 371
T V
Sbjct: 358 TVV 360
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 89
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D+DWE+PQ
Sbjct: 90 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQ-AA 148
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 149 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 206
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 207 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 265
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 266 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 325
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 326 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 385
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 386 YKAKYIKQQQLGGVMFWHLGQDNR 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D+DWE+PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D+DWE+PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D+DW++PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D++WE+PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+D++WE+PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/384 (25%), Positives = 160/384 (41%), Gaps = 68/384 (17%)
Query: 45 FPPSAI---NTNLFTHIYYAFLMPNN---VTYKFNIDNSTAIQLSNFTTTLHHKNPPVKT 98
FP S I THI ++FL N+ + +++ A + N T L NP ++
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRI 90
Query: 99 LFSIGG------AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK 152
+FSIGG G + +V+ P SR F S + + + +GFDG+++DWE+PQ
Sbjct: 91 MFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQ-AA 149
Query: 153 EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD-FFVADVYRKYPVGSINRNLD 211
E+ L E R L ++ + L + + + FF++ Y K + I LD
Sbjct: 150 EVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLD 207
Query: 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK------SW-------------- 251
+IN M +D G W+ T AAL+ + + L+ SW
Sbjct: 208 YINLMTYDLAGPWEKVTN-HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLT 266
Query: 252 ---------LRAGVHRSKLVMGLPLYGRSWK-LKDPNSHEIGS---------PAVD---- 288
+ GV +K+VMG+P YGR++K + N + S P+ D
Sbjct: 267 VDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLV 326
Query: 289 -----VGPGDKGLMQFVQVGEFNRMN-GATVVYDVESVSAYSFAGST--WIGYDDEISAT 340
V D + + Q+ + + N G +++ ++ + Y + ++ YDD S
Sbjct: 327 GCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFK 386
Query: 341 IKIGFAQALGLRGYFFWALSYDNE 364
K + + L G FW L DN
Sbjct: 387 YKAKYIKQQQLGGVMFWHLGQDNR 410
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 153/378 (40%), Gaps = 84/378 (22%)
Query: 38 WPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVK 97
W ++ +SFP + + YA LM L +NP +K
Sbjct: 210 WAAYQKSFPQAGHEYSTPIKGNYAMLM-----------------------ALKQRNPDLK 246
Query: 98 TLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGF-DGLDLDWEFPQNPKEMHD 156
+ SIGG G + F D ++R F+ S + + + F DG+D+DWEFP D
Sbjct: 247 IIPSIGG-GTLSDPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAAD 304
Query: 157 LG----------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI 206
G L+ E R+ L+ E +A T+A+ D + DV V
Sbjct: 305 KGDPVNDGPAYIALMRELRVMLD-ELEAETGRTYELTSAIGVGYDK-IEDVDYADAV--- 359
Query: 207 NRNLDWINAMCFDYHGGWDNTTTGAHAALY-------------------DPKSN--LSTS 245
+ +D+I AM +D++GGW+N G ALY +P +
Sbjct: 360 -QYMDYIFAMTYDFYGGWNNVP-GHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTAD 417
Query: 246 YGLKSWLRAGVHRSKLVMGLPLYGRSWK------LKDPNSHEIGSPAVDVGPGD------ 293
G++ L GV +KLV+G +YGR W+ L DPN G+ +
Sbjct: 418 NGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWE 477
Query: 294 ------KGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGST--WIGYDDEISATIKIGF 345
KG+ F+ +NG YD ++ + + + ST I +DD S K +
Sbjct: 478 DGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNY 537
Query: 346 AQALGLRGYFFWALSYDN 363
A++LGL G F W + DN
Sbjct: 538 AKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 141/327 (43%), Gaps = 61/327 (18%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGF-DGLDLDWEF 147
L +NP +K + SIGG + F D ++R F+ S + + + F DG+D+DWEF
Sbjct: 238 LKQRNPDLKIIPSIGGWTL-SDPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWEF 295
Query: 148 PQNPKEMHDLG----------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
P D G L+ E R+ L+ E +A T+A+ D + DV
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLD-ELEAETGRTYELTSAIGVGYDK-IEDV 353
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALY-------------------DP 238
V + +D+I AM +D++GGW+N G ALY +P
Sbjct: 354 DYADAV----QYMDYIFAMTYDFYGGWNNVP-GHQTALYCGSFMRPGQCDGGGVDENGEP 408
Query: 239 KSN--LSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWK------LKDPNSHEIGSPAVDV- 289
+ G++ L GV +KLV+G +YGR W+ L DPN G+ +
Sbjct: 409 YKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLK 468
Query: 290 ----------GPGD-KGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGST--WIGYDDE 336
G D KG+ F+ +NG YD ++ + + + ST I +DD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDH 528
Query: 337 ISATIKIGFAQALGLRGYFFWALSYDN 363
S K +A++LGL G F W + DN
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 130/316 (41%), Gaps = 50/316 (15%)
Query: 84 NFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG------ 137
N L KNP +K + S+GG + F A+ SRQ + S I++ K
Sbjct: 106 NQLKQLKAKNPKLKVMISLGGW-TWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEG 164
Query: 138 ----------FDGLDLDWEFPQNPKEMHDLGL-----------LLDEWRLALEREAKATC 176
FDG+D+DWE+P + G+ LL E+R L+
Sbjct: 165 RGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNN 224
Query: 177 QPPLL--FTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAA 234
+ +L F A +D D + ++LD+ + +D HG W+ T TG A
Sbjct: 225 KKYVLSAFLPANPADIDAGGWDDPANF------KSLDFGSIQGYDLHGAWNPTLTGHQAN 278
Query: 235 LYD-------PKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAV 287
LYD P S +K +L AG+ +L +GL YGR W N G PA
Sbjct: 279 LYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGW-TGAKNVSPWG-PAT 336
Query: 288 DVGPGDKGLMQFVQVGEFNRMNG-ATVVYDVESVSAYSFAGSTWIGYDDEISATIKIGFA 346
D PG +++++ T YD + SA+ + G+ W YD+ + K +
Sbjct: 337 DGAPG----TYETANEDYDKLKTLGTDHYDAATGSAWRYDGTQWWSYDNIATTKQKTDYI 392
Query: 347 QALGLRGYFFWALSYD 362
+ GL G +W LS D
Sbjct: 393 VSKGLGGGMWWELSGD 408
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 100/390 (25%), Positives = 167/390 (42%), Gaps = 85/390 (21%)
Query: 46 PPSAINTNLFTHIYYAF--LMPNNVTYKFNIDNSTAIQLSNFT--TTLHHKNPPVKTLFS 101
P I +H+ Y + L N+ ++++ + I F+ T+L K P +K L S
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQ-AYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLS 82
Query: 102 IGGAGADTSI-------FVDMASHPRSRQ-AFIHSSIEVARKFGFDGLDLDWEFPQN-PK 152
+GG D I ++D+ + RQ FI S+ E+ + +GFDGLDL ++FP+N P+
Sbjct: 83 VGG---DHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPR 139
Query: 153 EMH-DLGL------------LLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYR 199
++H DLGL + + AL +E FTA V D AD +
Sbjct: 140 KVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQ---------FTALVRDVKDSLRADGFL 190
Query: 200 -------------KYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAA-LYDPK------ 239
+ + ++N +D++N FD+ N ++A +Y P
Sbjct: 191 LSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRL 250
Query: 240 SNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWKL-KD------PNSHEIGSPAVDVGPG 292
++L+ + ++ WL G +K+ +G+ YG +WKL KD P E PA +
Sbjct: 251 AHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQS 310
Query: 293 DK-GLMQFVQV-GEFNR-----MNGATVVYDVESVSAYSFAG------------STWIGY 333
K GL+ + ++ G+ + + G S F G W+ Y
Sbjct: 311 QKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSY 370
Query: 334 DDEISATIKIGFAQALGLRGYFFWALSYDN 363
DD SA+ K +A+ L G + LSYD+
Sbjct: 371 DDPDSASNKAAYARVKNLGGVALFDLSYDD 400
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 61/327 (18%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGF-DGLDLDWEF 147
L +NP +K + SIGG + F D ++R F+ S + + + F DG+D+DW F
Sbjct: 238 LKQRNPDLKIIPSIGGWTL-SDPFYDFVDK-KNRDTFVASVKKFLKTWKFYDGVDIDWMF 295
Query: 148 PQNPKEMHDLG----------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
P D G L+ E R+ L+ E +A T+A+ D + DV
Sbjct: 296 PGGGGAAADKGDPVNDGPAYIALMRELRVMLD-ELEAETGRTYELTSAIGVGYDK-IEDV 353
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALY-------------------DP 238
V + +D+I AM +D++GGW+N G ALY +P
Sbjct: 354 DYADAV----QYMDYIFAMTYDFYGGWNNVP-GHQTALYCGSFMRPGQCDGGGVDENGEP 408
Query: 239 KSN--LSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWK------LKDPNSHEIGSPAVDV- 289
+ G++ L GV +KLV+G +YGR W+ L DPN G+ +
Sbjct: 409 YKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLK 468
Query: 290 ----------GPGD-KGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGST--WIGYDDE 336
G D KG+ F+ +NG YD ++ + + + ST I +DD
Sbjct: 469 GSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDH 528
Query: 337 ISATIKIGFAQALGLRGYFFWALSYDN 363
S K +A++LGL G F W + DN
Sbjct: 529 RSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 124/292 (42%), Gaps = 22/292 (7%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M FD++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRMNGA-TV 313
K+V+G +YGR W + + I GP + G++ + Q+ G+F M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGEWQY 470
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 128/298 (42%), Gaps = 34/298 (11%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLG---------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
FP +LG LL+ E R L++ + T + L T+A+ D
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYEL-TSAISAGKDKIDKVA 351
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLR 253
Y ++D I M +D++G +D G AL + P + +T G+ + L
Sbjct: 352 YN-----VAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLA 406
Query: 254 AGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRM 308
GV K+V+G +YGR W + + I GP + G++ + Q+ G+F M
Sbjct: 407 QGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--M 464
Query: 309 NGA-TVVYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
+G YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 465 SGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 124/292 (42%), Gaps = 22/292 (7%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M +D++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRMNGA-TV 313
K+V+G +YGR W + + I GP + G++ + Q+ G+F M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGEWQY 470
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 124/292 (42%), Gaps = 22/292 (7%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DW+
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWQ 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M +D++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRMNGA-TV 313
K+V+G +YGR W + + I GP + G++ + Q+ G+F M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGEWQY 470
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 125/297 (42%), Gaps = 32/297 (10%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLG---------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
FP +LG LL+ E R L++ + T + L T+A+ D
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYEL-TSAISAGKDKIDKVA 351
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLR 253
Y ++D I M +D++G +D G AL + P + +T G+ + L
Sbjct: 352 YN-----VAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLT 406
Query: 254 AGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQVGEFNRMN 309
GV K+V+G +YGR W + + I GP + G++ + Q+ M+
Sbjct: 407 QGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAS-QFMS 465
Query: 310 GA-TVVYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
G YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 466 GEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 125/297 (42%), Gaps = 32/297 (10%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 259 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 315
Query: 147 FPQNPKEMHDLG---------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
FP +LG LL+ E R L++ + T + L T+A+ D
Sbjct: 316 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYEL-TSAISAGKDKIDKVA 374
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLR 253
Y ++D I M +D++G +D G AL + P + +T G+ + L
Sbjct: 375 YN-----VAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLA 429
Query: 254 AGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQVGEFNRMN 309
GV K+V+G +YGR W + + I GP + G++ + Q+ M+
Sbjct: 430 QGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAS-QFMS 488
Query: 310 GA-TVVYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
G YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 489 GEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 122/296 (41%), Gaps = 30/296 (10%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLG---------LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
FP +LG LL+ E R L++ + T + L T+A+ D
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYEL-TSAISAGKDKIDKVA 351
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLR 253
Y ++D I M +D++G +D G AL + P + +T G+ + L
Sbjct: 352 YN-----VAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLT 406
Query: 254 AGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQVGEFNRMN 309
GV K+V+G +YGR W + + I GP + G++ + Q+
Sbjct: 407 QGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSG 466
Query: 310 GATVVYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 467 EWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 123/292 (42%), Gaps = 22/292 (7%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+ WE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIAWE 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M +D++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRMNGA-TV 313
K+V+G +YGR W + + I GP + G++ + Q+ G+F M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGEWQY 470
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 123/292 (42%), Gaps = 22/292 (7%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DWE
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWE 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M + ++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQV-GEFNRMNGA-TV 313
K+V+G +YGR W + + I GP + G++ + Q+ G+F M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQF--MSGEWQY 470
Query: 314 VYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 471 TYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 120/291 (41%), Gaps = 20/291 (6%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVAR--KFGFDGLDLDWE 146
L +P +K L SIGG F R R F+ S E + KF FDG+D+DW
Sbjct: 236 LKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDR--FVGSVKEFLQTWKF-FDGVDIDWL 292
Query: 147 FPQNPKEMHDLGLLLD-EWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--DVYRKYPV 203
FP +LG D E + L +E +A + T Y A D K
Sbjct: 293 FPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY 352
Query: 204 GSINRNLDWINAMCFDYHGGWDNTTTGAHAAL----YDPKSNLSTSYGLKSWLRAGVHRS 259
++D I M +D++G +D G AL + P + +T G+ + L GV
Sbjct: 353 NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 260 KLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPG----DKGLMQFVQVGEFNRMNGA-TVV 314
K+V+G +YGR W + + I GP + G++ + Q+ M+G
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAS-QFMSGEWQYT 471
Query: 315 YDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363
YD + + Y F ST I +DD S K + L G F W + DN
Sbjct: 472 YDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 69/336 (20%)
Query: 88 TLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEF 147
L +NP +K L S+GG GA F A+ SR FI S+ ++ +++G DG+DLDWEF
Sbjct: 100 ALRKQNPDLKVLLSVGGWGARG--FSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEF 157
Query: 148 PQN---------PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVA--D 196
P N P + + LL R A+ + L T AV + + + D
Sbjct: 158 PVNGAWGLVASQPADRDNFTALLKSLREAVGEQK--------LVTIAVGANAESPKSWVD 209
Query: 197 VYRKYPVGSINRNLDWINAMCFDYHGGWD----NTTTGAHAALYDPKSNLSTSYGLKSWL 252
V PV L++IN +D G N +H S + + ++L
Sbjct: 210 VKAVAPV------LNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAADKYSADFVVNNYL 263
Query: 253 RAGVHRSKLVMGLPLYGR----------SWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQV 302
AG+ S+ +G+ YGR W D ++ + P G + + F +
Sbjct: 264 AAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYF----GPQQIALFASL 319
Query: 303 G---------EFNRMNGA---------TVVYDVES----VSAYSFAGSTW--IGYDDEIS 338
G ++N + G T +D E+ +S S G + Y++ S
Sbjct: 320 GYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRS 379
Query: 339 ATIKIGFAQALGLRGYFFWALSYDNEWKISTQVARA 374
IK + +A GL G FW D++ +++ Q+A +
Sbjct: 380 VAIKADYIKAKGLAGAXFWEYGADDQNQLARQLAES 415
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/366 (21%), Positives = 134/366 (36%), Gaps = 55/366 (15%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGG 104
PP + +T++ + + + Y+ N L H + FSIGG
Sbjct: 168 LPPESADTSIESGTFLPY-------YQQNRAAGLLGGLRELQXKAHAMGHKLDLAFSIGG 220
Query: 105 AGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQNPKEMHDLG----- 158
+S F +A +P R+ F+ S ++ +F F +D+DWE+P + ++
Sbjct: 221 WSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDG 279
Query: 159 ----LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR----NL 210
LL+ E R AL+ F + + + V +I++ L
Sbjct: 280 ENYVLLIKELRSALDSR----------FGYSNRXEISIACSGVXAXLKXSNIDQLVANGL 329
Query: 211 DWINAMCFDYHGGWDNTTTGAHAALYDPKS-------NLSTSYGLKSWLRA-GVHRSKLV 262
D I M +D+ G G H LY PK +LS + G+ K+
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEKIH 389
Query: 263 MGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRM----------NGAT 312
+G YGRS D + + +G + G +F + N M NG
Sbjct: 390 LGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI-VXNYMDAEHSLSMGKNGFV 448
Query: 313 VVYDVESVSAYSF--AGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQ 370
++ D + + + F A +I D + K +A L G F W S D + +
Sbjct: 449 LMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFSW--SGDQDCGLLAN 506
Query: 371 VARAWI 376
AR +
Sbjct: 507 AAREGL 512
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 79/364 (21%), Positives = 136/364 (37%), Gaps = 51/364 (14%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGG 104
PP + +T++ + + + N L H + FSIGG
Sbjct: 168 LPPESADTSIESGTFLPYYQQNRAAGLLG-------GLRELQKKAHAMGHKLDLAFSIGG 220
Query: 105 AGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFP---------QNPKEM 154
+S F +A +P R+ F+ S ++ +F F +D+DWE+P + K+
Sbjct: 221 WSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDG 279
Query: 155 HDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN-LDWI 213
+ LL+ E R AL+ + + + + V +K + + N LD I
Sbjct: 280 ENYVLLIKELRSALDSRFGYSNRXEISIACSG-------VXAXLKKSNIDQLVANGLDNI 332
Query: 214 NAMCFDYHGGWDNTTTGAHAALYDPKS-------NLSTSYGLKSWL--RAGVHRSKLVMG 264
M +D+ G G H LY PK +LS + +L G+ + +G
Sbjct: 333 YLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAI-DYLHNELGIPMEXIHLG 391
Query: 265 LPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRM----------NGATVV 314
YGRS D + + +G + G +F + + N M NG ++
Sbjct: 392 YANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVK-NYMDAEHSLSMGKNGFVLM 450
Query: 315 YDVESVSAYSF--AGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVA 372
D + + + F A +I D + K +A L G F W S D + + A
Sbjct: 451 TDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSW--SGDQDCGLLANAA 508
Query: 373 RAWI 376
R +
Sbjct: 509 REGL 512
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 78/363 (21%), Positives = 134/363 (36%), Gaps = 49/363 (13%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGG 104
PP + +T++ + + + Y+ N L H + FSIGG
Sbjct: 168 LPPESADTSIESGTFLPY-------YQQNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGG 220
Query: 105 AGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQNPKEMHDLG----- 158
+S F +A +P R+ F+ S ++ +F F +D+DWE+P + ++
Sbjct: 221 WSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDG 279
Query: 159 ----LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN-LDWI 213
LL+ E R AL+ + + + + V +K + + N LD I
Sbjct: 280 ENYVLLIKELRSALDSRFGYSNRXEISIACSG-------VXAXLKKSNIDQLVANGLDNI 332
Query: 214 NAMCFDYHGGWDNTTTGAHAALYDPKS-------NLSTSYGLKSWLRA-GVHRSKLVMGL 265
M +D+ G G H LY PK +LS + G+ + +G
Sbjct: 333 YLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGY 392
Query: 266 PLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRM----------NGATVVY 315
YGRS D + + +G + G +F + N M NG ++
Sbjct: 393 ANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDI-VXNYMDAEHSLSMGKNGFVLMT 451
Query: 316 DVESVSAYSF--AGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVAR 373
D + + + F A +I D + K +A L G F W S D + + AR
Sbjct: 452 DTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGVFSW--SGDQDCGLLANAAR 509
Query: 374 AWI 376
+
Sbjct: 510 EGL 512
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 134/366 (36%), Gaps = 55/366 (15%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGG 104
PP + +T++ + + + Y+ N L H + FSIGG
Sbjct: 168 LPPESADTSIESGTFLPY-------YQQNRAAGLLGGLRELQKKAHAMGHKLDLAFSIGG 220
Query: 105 AGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQNPKEMHDLG----- 158
+S F +A +P R+ F+ S ++ +F F +D+DWE+P + ++
Sbjct: 221 WSL-SSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDG 279
Query: 159 ----LLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR----NL 210
LL+ E R AL+ F + + + V +I++ L
Sbjct: 280 ENYVLLIXELRSALDSR----------FGYSNRXEISIACSGVXAXLKXSNIDQLVANGL 329
Query: 211 DWINAMCFDYHGGWDNTTTGAHAALYDPKS-------NLSTSYGLKSWLRA-GVHRSKLV 262
D I M +D+ G G H LY PK +LS + G+ +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 263 MGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRM----------NGAT 312
+G YGRS D + + +G + G +F + + N M NG
Sbjct: 390 LGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVK-NYMDAEHSLSMGKNGFV 448
Query: 313 VVYDVESVSAYSF--AGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQ 370
++ D + + + F A +I D + K +A L G F W S D + +
Sbjct: 449 LMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSW--SGDQDCGLLAN 506
Query: 371 VARAWI 376
AR +
Sbjct: 507 AAREGL 512
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 75/200 (37%), Gaps = 31/200 (15%)
Query: 76 NSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARK 135
N ++ + T H N VK L S+ A F + P++R+ I I ++
Sbjct: 48 NPVRKRIESVRETAHKHN--VKILISL--AKNSPGEFTTAINDPKARKELIQQIIAFTKE 103
Query: 136 FGFDGLDLDWEFPQN-PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFV 194
+ DG D+D+E N K L + LA E+ TC V
Sbjct: 104 YKLDGFDIDYEEYDNWDKNFPSLLVFARGLYLAKEKNXLXTCA----------------V 147
Query: 195 ADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSW-LR 253
+ Y + D+IN +D G + T A YD LK W +
Sbjct: 148 NSRWLNYGT-EWEQYFDYINLXSYD-RGAF--TDKPVQHASYD-----DFVKDLKYWNEQ 198
Query: 254 AGVHRSKLVMGLPLYGRSWK 273
+SK+V GLP YG SW+
Sbjct: 199 CRASKSKIVGGLPFYGYSWE 218
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 79/195 (40%), Gaps = 36/195 (18%)
Query: 87 TTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
TT + P+ T+ ++ G T I + ++P +R +++ ++ G+ G+ +D+E
Sbjct: 61 TTWQRRVTPLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE 120
Query: 147 ---------FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197
F +++ D L + L + AK + P L
Sbjct: 121 QVSAADRDLFTGFLRQLRDR-LQAGGYVLTIAVPAKTSDNIPWL---------------- 163
Query: 198 YRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVH 257
R Y G I ++++ M +D+H + G A + + + + + A V
Sbjct: 164 -RGYDYGGIGAVVNYMFIMAYDWHHA--GSEPGPVAPITEIRRTIEFTI-------AQVP 213
Query: 258 RSKLVMGLPLYGRSW 272
K+++G+PLYG W
Sbjct: 214 SRKIIIGVPLYGYDW 228
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 61 AFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPP-VKTLFSIGGAGADTSIFVDMASHP 119
A P VT+ + + F + K K + S+GG S+ +
Sbjct: 40 ATTTPGAVTFNLDSAGLGGYTVDQFKADVRAKQAAGKKVIISVGGEKGTVSV-----NSS 94
Query: 120 RSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP 151
S F +S V R++GFDG+D+D E NP
Sbjct: 95 ASATNFANSVYSVXREYGFDGVDIDLENGLNP 126
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
K+ K + SIGG + D A+ R FI+S + K+GFDG+D+D E
Sbjct: 69 KSKGKKVVLSIGGQNG-VVLLPDNAAKDR----FINSIQSLIDKYGFDGIDIDLE 118
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 51/206 (24%)
Query: 99 LFSIGGAGADTSIFVDMASHPRSRQA-FIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDL 157
L ++GGA A + +S+++ F++ I + +GFDGLD+D E
Sbjct: 83 LIALGGADAHIEL-------KKSQESDFVNEIIRLVDTYGFDGLDIDLE----------- 124
Query: 158 GLLLDEWRLALEREAKATCQPPLLFTAAVYFSVD--FFVADVYRKYP-----------VG 204
+ A+E T P L ++ D F+ + ++P +
Sbjct: 125 -------QAAIEAADNQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSGKYAPYIN 177
Query: 205 SINRNLDWINAMCFDYHGG--WDNTTTGAHAALYDPKSNLSTSYGLKSWLRAG------V 256
+++ D+IN ++ G WD+ + D K YGL L G +
Sbjct: 178 NLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKE-DFLYGLTQRLVTGTDGFIKI 236
Query: 257 HRSKLVMGLPLYGRSWK---LKDPNS 279
SK V+GLP + +KDPN+
Sbjct: 237 PASKFVIGLPSNNDAAATGYVKDPNA 262
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
K+ K + SIGG + D A+ R FI+S + K+GFDG+D+D +
Sbjct: 69 KSKGKKVVLSIGGQNG-VVLLPDNAAKDR----FINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146
K+ K + SIGG + D A+ R FI+S + K+GFDG+D+D +
Sbjct: 69 KSKGKKVVLSIGGQNG-VVLLPDNAAKDR----FINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 71 KFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGA--GADTSIFVDMASHPRSRQAFIHS 128
KFN+ ++I + + + +P V+ S+GGA G++T F AS + S
Sbjct: 51 KFNVFWDSSILGPDQISAIKSSHPNVRVAVSLGGASVGSNTVQF-QAASVDSWVSNAVTS 109
Query: 129 SIEVARKFGFDGLDLDWEFPQN 150
+ +++ DG+D+D+E QN
Sbjct: 110 LTRIIQRYNLDGIDIDYEHFQN 131
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 123/311 (39%), Gaps = 53/311 (17%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEF 147
LH + ++ SIGG + +F ++A R F+ + ++F F LD+DWE+
Sbjct: 231 LHEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEY 289
Query: 148 --------PQNPKEMHDLGLLLDEWRLA----LEREAKATCQPPLLFTAAVYFSVDFFVA 195
P +P + + +L+ + A L+ + A+ P AA ++
Sbjct: 290 PGSIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPAL----- 344
Query: 196 DVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAG 255
++ + IN M +D+ D + H +Y S++ + Y + +
Sbjct: 345 ----------MDAGVTGINLMTYDFFTLGDGKLS-HHTNIYRDPSDVYSKYSIDDAVTHL 393
Query: 256 VHRSK-----LVMGLPLYGRSWK-----LKDPNSHEIGSPAVD----VGPGDKGLMQFVQ 301
+ K + +G Y R+ K P+ + D +G + ++++
Sbjct: 394 IDEKKVDPKAIFIGYAGYTRNAKNATITTSIPSEEALKGTYTDANQTLGSFEYSVLEWTD 453
Query: 302 V----GEFNR---MNGATVVYDVESVSAYSFAGST--WIGYDDEISATIKIGFAQALGLR 352
+ +F + NG +V+D + + Y ++ +T +I D S K + + GL
Sbjct: 454 IICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLG 513
Query: 353 GYFFWALSYDN 363
G F W+ DN
Sbjct: 514 GLFIWSGDQDN 524
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLD 144
K+ K + SIGG + D A+ R FI+S + K+GFDG+D+D
Sbjct: 69 KSKGKKVVLSIGGQNG-VVLLPDNAAKDR----FINSIQSLIDKYGFDGIDID 116
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEF 147
LH + ++ SIGG + +F ++A R F+ + ++F F LD+DWE+
Sbjct: 203 LHEADKELEFSLSIGGWSM-SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEY 261
Query: 148 P 148
P
Sbjct: 262 P 262
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 103 GGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP 151
G G +T + DM + F+H +++ A++ GFDG L P+ P
Sbjct: 187 GREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEP 235
>pdb|3FVS|A Chain A, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVS|B Chain B, Human Kynurenine Aminotransferase I In Complex With
Glycerol
pdb|3FVU|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVU|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With Indole-3-acetic Acid
pdb|3FVX|A Chain A, Human Kynurenine Aminotransferase I In Complex With Tris
pdb|3FVX|B Chain B, Human Kynurenine Aminotransferase I In Complex With Tris
Length = 422
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVK-TLFSIG 103
FPP F H M N T F T I S F L + P++ L ++G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 104 GAGA 107
G GA
Sbjct: 100 GYGA 103
>pdb|1W7L|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
pdb|1W7M|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Complex With L-Phe
Length = 422
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVK-TLFSIG 103
FPP F H M N T F T I S F L + P++ L ++G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 104 GAGA 107
G GA
Sbjct: 100 GYGA 103
>pdb|1W7N|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase I
In Pmp Form
Length = 422
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 45 FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVK-TLFSIG 103
FPP F H M N T F T I S F L + P++ L ++G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 104 GAGA 107
G GA
Sbjct: 100 GYGA 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,307,396
Number of Sequences: 62578
Number of extensions: 525166
Number of successful extensions: 1564
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1313
Number of HSP's gapped (non-prelim): 101
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)