Query 040415
Match_columns 379
No_of_seqs 161 out of 1418
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:11:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02879 GH18_plant_chitinase_c 100.0 2.6E-67 5.5E-72 485.7 32.6 297 31-367 2-298 (299)
2 cd02872 GH18_chitolectin_chito 100.0 1.4E-66 3E-71 496.2 35.1 329 34-375 1-362 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 2.8E-64 6.1E-69 483.7 34.7 330 33-375 1-413 (413)
4 smart00636 Glyco_18 Glycosyl h 100.0 1.2E-62 2.5E-67 464.7 33.2 317 33-362 1-334 (334)
5 cd02878 GH18_zymocin_alpha Zym 100.0 2.7E-62 5.9E-67 461.0 30.6 308 33-362 1-345 (345)
6 cd06548 GH18_chitinase The GH1 100.0 2.2E-61 4.7E-66 452.1 30.6 284 34-362 1-322 (322)
7 COG3325 ChiA Chitinase [Carboh 100.0 1.9E-61 4.2E-66 441.5 26.1 343 28-378 34-439 (441)
8 KOG2806 Chitinase [Carbohydrat 100.0 9.9E-61 2.1E-65 460.3 32.1 334 31-370 57-406 (432)
9 PF00704 Glyco_hydro_18: Glyco 100.0 7.7E-57 1.7E-61 427.1 29.8 322 32-362 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 5E-56 1.1E-60 415.4 25.4 295 33-363 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 6.7E-53 1.5E-57 397.7 33.1 298 31-371 35-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 5E-53 1.1E-57 394.9 26.7 294 33-363 3-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 4.9E-49 1.1E-53 363.9 25.7 288 34-364 2-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 4.2E-48 9E-53 350.4 26.3 249 34-371 1-253 (253)
15 cd00598 GH18_chitinase-like Th 100.0 9.1E-37 2E-41 269.5 21.8 206 34-362 1-210 (210)
16 COG3858 Predicted glycosyl hyd 100.0 2.5E-36 5.5E-41 276.0 19.3 241 95-363 160-411 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 3.2E-33 7E-38 251.7 24.5 203 33-267 1-217 (256)
18 KOG2091 Predicted member of gl 100.0 3.8E-32 8.2E-37 237.4 18.2 297 32-362 79-384 (392)
19 cd06544 GH18_narbonin Narbonin 100.0 1.6E-31 3.5E-36 239.1 20.3 202 44-272 12-221 (253)
20 cd02871 GH18_chitinase_D-like 100.0 4.3E-30 9.3E-35 239.0 25.6 215 32-268 1-248 (312)
21 cd06542 GH18_EndoS-like Endo-b 99.9 1.3E-25 2.8E-30 203.9 17.5 242 32-375 1-254 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 3.1E-23 6.8E-28 188.3 21.9 203 34-268 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.8 5.1E-20 1.1E-24 168.4 18.7 151 52-223 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 1.7E-17 3.6E-22 141.8 18.0 219 26-267 20-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.6 1.5E-13 3.3E-18 124.0 18.5 209 25-268 20-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.5 1.7E-06 3.7E-11 81.1 12.7 162 83-273 49-216 (339)
27 PF02638 DUF187: Glycosyl hydr 98.0 7.4E-05 1.6E-09 69.6 11.4 132 117-270 134-299 (311)
28 PF03644 Glyco_hydro_85: Glyco 97.8 6.7E-05 1.4E-09 69.7 7.5 175 53-271 27-209 (311)
29 PF13200 DUF4015: Putative gly 97.7 0.0023 5E-08 59.2 16.3 106 120-235 121-241 (316)
30 PF11340 DUF3142: Protein of u 97.6 0.00074 1.6E-08 56.6 10.5 116 118-269 22-138 (181)
31 KOG2331 Predicted glycosylhydr 95.3 0.3 6.4E-06 46.3 11.8 82 87-170 118-200 (526)
32 COG1306 Uncharacterized conser 90.6 0.62 1.4E-05 42.2 5.7 88 124-221 196-299 (400)
33 TIGR01370 cysRS possible cyste 88.6 3.9 8.4E-05 38.1 9.6 83 86-171 87-203 (315)
34 cd02810 DHOD_DHPD_FMN Dihydroo 88.4 4.5 9.8E-05 37.2 10.1 74 79-168 82-161 (289)
35 PF13199 Glyco_hydro_66: Glyco 88.3 1.3 2.9E-05 44.5 6.7 54 116-169 237-300 (559)
36 TIGR02402 trehalose_TreZ malto 88.2 2.9 6.4E-05 42.3 9.2 89 78-171 158-268 (542)
37 PF14883 GHL13: Hypothetical g 87.1 24 0.00052 32.3 13.9 198 54-273 30-266 (294)
38 PRK12313 glycogen branching en 86.5 8.4 0.00018 39.9 11.6 91 78-171 218-352 (633)
39 TIGR01515 branching_enzym alph 85.8 13 0.00028 38.3 12.5 92 78-171 204-339 (613)
40 COG1649 Uncharacterized protei 85.8 2 4.4E-05 41.4 6.2 126 119-270 181-344 (418)
41 PRK12568 glycogen branching en 85.0 13 0.00028 38.9 11.9 92 78-171 317-452 (730)
42 PRK05402 glycogen branching en 83.1 17 0.00036 38.3 12.2 92 78-171 313-448 (726)
43 TIGR02104 pulA_typeI pullulana 83.1 11 0.00024 38.7 10.7 83 80-171 229-339 (605)
44 PRK14706 glycogen branching en 82.6 19 0.00041 37.3 12.0 92 78-171 215-348 (639)
45 PLN02960 alpha-amylase 81.6 17 0.00037 38.6 11.3 91 78-171 464-601 (897)
46 PF14871 GHL6: Hypothetical gl 81.4 4.6 0.0001 32.5 5.8 63 80-145 44-132 (132)
47 TIGR02100 glgX_debranch glycog 79.2 13 0.00029 38.8 9.7 49 118-166 315-365 (688)
48 PRK10785 maltodextrin glucosid 78.1 16 0.00035 37.5 9.8 55 117-171 303-363 (598)
49 TIGR02102 pullulan_Gpos pullul 77.1 18 0.00039 39.8 10.2 82 80-170 555-661 (1111)
50 PLN03244 alpha-amylase; Provis 75.9 41 0.00089 35.5 11.7 65 78-144 439-531 (872)
51 PF14885 GHL15: Hypothetical g 75.9 4.5 9.7E-05 29.3 3.7 37 110-146 39-76 (79)
52 COG1891 Uncharacterized protei 73.2 40 0.00088 28.3 9.0 179 118-362 6-192 (235)
53 PLN02447 1,4-alpha-glucan-bran 72.4 41 0.00088 35.5 11.0 91 78-171 298-436 (758)
54 PRK03705 glycogen debranching 71.9 16 0.00034 38.0 7.9 65 80-146 242-338 (658)
55 PF02057 Glyco_hydro_59: Glyco 70.7 11 0.00023 38.7 6.2 82 84-172 116-201 (669)
56 PRK14581 hmsF outer membrane N 70.6 97 0.0021 32.3 13.1 201 54-273 347-614 (672)
57 cd04740 DHOD_1B_like Dihydroor 69.5 32 0.00069 31.7 8.8 40 94-149 88-127 (296)
58 cd06591 GH31_xylosidase_XylS X 69.1 32 0.00068 32.2 8.8 75 71-148 57-160 (319)
59 PRK14705 glycogen branching en 68.6 69 0.0015 35.8 12.1 92 78-171 813-948 (1224)
60 PRK07259 dihydroorotate dehydr 68.6 31 0.00067 31.9 8.6 39 95-149 91-130 (301)
61 PRK14582 pgaB outer membrane N 68.1 26 0.00055 36.4 8.4 139 118-273 439-614 (671)
62 PLN02495 oxidoreductase, actin 66.6 63 0.0014 31.2 10.2 56 80-150 98-153 (385)
63 PF00834 Ribul_P_3_epim: Ribul 66.4 29 0.00062 30.1 7.3 65 130-219 73-137 (201)
64 PLN02877 alpha-amylase/limit d 66.3 38 0.00082 36.7 9.4 31 119-149 534-564 (970)
65 TIGR02103 pullul_strch alpha-1 66.0 20 0.00044 38.4 7.4 47 118-171 470-516 (898)
66 PF07172 GRP: Glycine rich pro 64.7 5.9 0.00013 29.8 2.4 20 1-21 1-20 (95)
67 PRK07565 dihydroorotate dehydr 64.6 43 0.00094 31.5 8.8 58 75-149 82-139 (334)
68 cd06600 GH31_MGAM-like This fa 64.0 1.3E+02 0.0027 28.2 11.8 34 116-149 129-162 (317)
69 cd06589 GH31 The enzymes of gl 64.0 32 0.0007 31.2 7.6 59 73-148 59-117 (265)
70 PF02065 Melibiase: Melibiase; 63.7 31 0.00067 33.4 7.7 64 116-188 162-236 (394)
71 cd06592 GH31_glucosidase_KIAA1 58.8 57 0.0012 30.3 8.4 33 116-148 134-166 (303)
72 PRK02506 dihydroorotate dehydr 58.4 63 0.0014 30.1 8.6 79 74-168 71-156 (310)
73 COG0296 GlgB 1,4-alpha-glucan 58.2 35 0.00075 35.1 7.1 91 78-170 212-346 (628)
74 PRK03995 hypothetical protein; 57.8 33 0.00072 31.2 6.3 70 93-164 178-260 (267)
75 PRK08318 dihydropyrimidine deh 57.3 71 0.0015 31.1 9.2 49 86-149 90-138 (420)
76 PRK09936 hypothetical protein; 56.5 1.6E+02 0.0036 27.0 11.9 85 53-147 50-144 (296)
77 cd04741 DHOD_1A_like Dihydroor 56.1 1.1E+02 0.0024 28.2 9.8 79 74-168 68-156 (294)
78 cd06602 GH31_MGAM_SI_GAA This 55.6 64 0.0014 30.5 8.2 34 116-149 134-167 (339)
79 cd04734 OYE_like_3_FMN Old yel 55.1 62 0.0013 30.6 8.1 65 78-145 75-162 (343)
80 PF07476 MAAL_C: Methylasparta 54.6 52 0.0011 28.9 6.6 106 94-222 66-174 (248)
81 PF04914 DltD_C: DltD C-termin 53.8 82 0.0018 25.2 7.3 61 79-144 35-96 (130)
82 COG3867 Arabinogalactan endo-1 53.7 1.9E+02 0.004 26.8 12.6 21 82-102 103-124 (403)
83 cd02940 DHPD_FMN Dihydropyrimi 53.0 1.2E+02 0.0025 28.1 9.4 53 83-150 87-139 (299)
84 cd04735 OYE_like_4_FMN Old yel 52.5 82 0.0018 29.9 8.5 67 76-145 74-165 (353)
85 PF12876 Cellulase-like: Sugar 51.3 23 0.00049 26.0 3.6 72 133-218 2-88 (88)
86 PF08869 XisI: XisI protein; 50.8 8.1 0.00017 29.9 1.1 18 248-265 80-97 (111)
87 PRK08005 epimerase; Validated 50.4 61 0.0013 28.3 6.6 65 130-219 74-138 (210)
88 PRK09722 allulose-6-phosphate 50.3 58 0.0013 28.9 6.5 66 130-219 75-140 (229)
89 PF07364 DUF1485: Protein of u 48.5 1.4E+02 0.0031 27.6 9.0 147 82-269 47-198 (292)
90 cd04739 DHOD_like Dihydroorota 47.8 1.4E+02 0.0031 27.9 9.2 52 80-148 85-136 (325)
91 PRK01060 endonuclease IV; Prov 47.6 57 0.0012 29.6 6.4 45 126-170 14-58 (281)
92 cd02803 OYE_like_FMN_family Ol 47.5 60 0.0013 30.3 6.7 23 123-146 141-163 (327)
93 PF14307 Glyco_tran_WbsX: Glyc 47.1 42 0.00091 31.8 5.5 41 334-375 55-95 (345)
94 KOG3111 D-ribulose-5-phosphate 46.2 95 0.0021 26.7 6.7 66 129-219 79-144 (224)
95 cd04747 OYE_like_5_FMN Old yel 46.1 1E+02 0.0022 29.5 8.0 26 121-147 142-167 (361)
96 PLN02711 Probable galactinol-- 45.6 1.8E+02 0.004 30.5 10.0 97 80-176 305-439 (777)
97 PRK08091 ribulose-phosphate 3- 45.3 88 0.0019 27.8 6.9 66 130-220 84-151 (228)
98 cd00019 AP2Ec AP endonuclease 44.7 71 0.0015 29.0 6.6 44 127-170 13-56 (279)
99 TIGR03234 OH-pyruv-isom hydrox 44.4 62 0.0013 28.9 6.0 35 126-170 16-50 (254)
100 PRK05286 dihydroorotate dehydr 42.3 1.9E+02 0.0042 27.3 9.2 78 82-169 124-206 (344)
101 cd02930 DCR_FMN 2,4-dienoyl-Co 42.0 83 0.0018 29.9 6.8 65 78-145 75-158 (353)
102 PRK14510 putative bifunctional 42.0 1.5E+02 0.0033 33.4 9.5 50 117-171 316-365 (1221)
103 cd02801 DUS_like_FMN Dihydrour 42.0 1.1E+02 0.0023 26.8 7.1 44 89-148 48-91 (231)
104 PRK14866 hypothetical protein; 41.0 81 0.0017 31.0 6.4 69 94-164 183-263 (451)
105 PRK08745 ribulose-phosphate 3- 40.8 97 0.0021 27.4 6.5 66 130-220 78-143 (223)
106 PF04468 PSP1: PSP1 C-terminal 40.6 87 0.0019 23.1 5.2 58 112-169 14-80 (88)
107 cd02932 OYE_YqiM_FMN Old yello 40.3 92 0.002 29.3 6.7 47 54-102 46-97 (336)
108 cd04733 OYE_like_2_FMN Old yel 39.9 63 0.0014 30.5 5.5 25 121-146 147-171 (338)
109 COG5185 HEC1 Protein involved 39.7 31 0.00067 33.6 3.3 54 114-169 98-151 (622)
110 COG5309 Exo-beta-1,3-glucanase 38.7 1.4E+02 0.003 27.2 6.9 59 86-144 221-280 (305)
111 cd02929 TMADH_HD_FMN Trimethyl 38.2 1.2E+02 0.0025 29.2 7.1 90 55-147 52-173 (370)
112 TIGR01839 PHA_synth_II poly(R) 38.1 89 0.0019 31.7 6.4 52 127-178 237-288 (560)
113 PRK08883 ribulose-phosphate 3- 37.9 1.1E+02 0.0025 26.8 6.5 66 130-220 74-139 (220)
114 TIGR00742 yjbN tRNA dihydrouri 37.9 1.7E+02 0.0036 27.4 7.9 41 93-149 52-92 (318)
115 COG1908 FrhD Coenzyme F420-red 37.7 60 0.0013 25.5 4.0 46 126-172 80-125 (132)
116 PRK09441 cytoplasmic alpha-amy 37.6 90 0.002 31.1 6.5 47 117-170 206-252 (479)
117 COG4724 Endo-beta-N-acetylgluc 37.2 60 0.0013 31.0 4.7 82 84-167 131-218 (553)
118 TIGR03849 arch_ComA phosphosul 36.7 3.1E+02 0.0067 24.5 12.2 69 81-165 42-110 (237)
119 cd06595 GH31_xylosidase_XylS-l 36.7 2.3E+02 0.0049 26.1 8.6 75 72-148 66-160 (292)
120 PF00128 Alpha-amylase: Alpha 36.6 63 0.0014 29.3 5.0 47 117-171 142-188 (316)
121 PF10566 Glyco_hydro_97: Glyco 36.5 2.9E+02 0.0062 25.3 8.9 75 79-168 72-146 (273)
122 PF15284 PAGK: Phage-encoded v 36.1 37 0.00079 23.0 2.3 30 1-30 1-31 (61)
123 PF00724 Oxidored_FMN: NADH:fl 35.7 97 0.0021 29.3 6.1 47 54-102 49-100 (341)
124 PF14587 Glyco_hydr_30_2: O-Gl 35.7 54 0.0012 31.4 4.2 86 82-172 106-217 (384)
125 PF02896 PEP-utilizers_C: PEP- 35.7 1.3E+02 0.0028 27.9 6.6 91 122-221 119-209 (293)
126 PRK09505 malS alpha-amylase; R 35.6 50 0.0011 34.5 4.4 30 117-146 434-463 (683)
127 TIGR01036 pyrD_sub2 dihydrooro 35.3 3.1E+02 0.0066 25.9 9.3 80 80-169 119-203 (335)
128 PRK11815 tRNA-dihydrouridine s 35.2 1.1E+02 0.0024 28.8 6.4 41 93-149 62-102 (333)
129 KOG1552 Predicted alpha/beta h 34.9 59 0.0013 29.3 4.1 46 212-263 88-134 (258)
130 TIGR00737 nifR3_yhdG putative 34.5 1.7E+02 0.0037 27.2 7.5 41 92-148 59-99 (319)
131 PRK10550 tRNA-dihydrouridine s 34.1 1.5E+02 0.0033 27.6 7.0 38 96-149 63-100 (312)
132 PRK10397 lipoprotein; Provisio 34.0 93 0.002 24.6 4.5 40 29-75 29-68 (137)
133 PF08885 GSCFA: GSCFA family; 33.0 50 0.0011 29.8 3.4 25 80-104 152-176 (251)
134 TIGR02456 treS_nterm trehalose 32.9 98 0.0021 31.4 5.9 54 117-171 171-230 (539)
135 COG0036 Rpe Pentose-5-phosphat 32.6 2.3E+02 0.0051 24.9 7.3 65 130-219 77-141 (220)
136 smart00633 Glyco_10 Glycosyl h 32.4 3.5E+02 0.0076 24.2 8.9 55 82-146 105-160 (254)
137 COG1080 PtsA Phosphoenolpyruva 31.6 3.8E+02 0.0082 27.3 9.4 92 120-221 366-458 (574)
138 TIGR00542 hxl6Piso_put hexulos 31.4 1.1E+02 0.0024 27.7 5.6 45 127-171 19-64 (279)
139 cd06598 GH31_transferase_CtsZ 31.2 2.5E+02 0.0053 26.2 8.0 30 117-147 135-164 (317)
140 PRK13840 sucrose phosphorylase 30.9 1.6E+02 0.0036 29.4 6.9 54 116-170 166-225 (495)
141 cd01841 NnaC_like NnaC (CMP-Ne 30.6 2.9E+02 0.0062 22.5 7.7 65 78-145 73-138 (174)
142 cd04738 DHOD_2_like Dihydrooro 28.8 2.7E+02 0.0059 26.1 7.8 77 83-169 115-197 (327)
143 cd07321 Extradiol_Dioxygenase_ 28.6 75 0.0016 22.8 3.1 29 111-139 8-36 (77)
144 PF06316 Ail_Lom: Enterobacter 28.5 53 0.0011 28.3 2.6 37 4-40 1-38 (199)
145 PF01120 Alpha_L_fucos: Alpha- 28.4 5E+02 0.011 24.5 9.6 86 78-166 136-234 (346)
146 PF07582 AP_endonuc_2_N: AP en 28.3 94 0.002 20.7 3.3 40 127-167 3-43 (55)
147 cd06593 GH31_xylosidase_YicI Y 27.9 3.1E+02 0.0066 25.3 8.0 30 116-146 129-158 (308)
148 PF02581 TMP-TENI: Thiamine mo 27.8 3E+02 0.0066 23.0 7.3 70 119-218 38-124 (180)
149 PLN02334 ribulose-phosphate 3- 27.7 2.7E+02 0.0058 24.5 7.2 68 129-219 80-149 (229)
150 PRK13523 NADPH dehydrogenase N 27.3 5.3E+02 0.012 24.3 9.9 66 78-146 79-164 (337)
151 cd01828 sialate_O-acetylestera 27.3 3.1E+02 0.0067 22.2 7.3 59 79-143 71-130 (169)
152 TIGR00262 trpA tryptophan synt 27.2 4.6E+02 0.01 23.6 9.8 65 129-218 107-172 (256)
153 PRK09997 hydroxypyruvate isome 27.2 1.7E+02 0.0037 26.1 6.0 35 126-170 17-51 (258)
154 PLN02684 Probable galactinol-- 27.0 2.6E+02 0.0056 29.4 7.6 60 117-176 358-419 (750)
155 smart00812 Alpha_L_fucos Alpha 27.0 3.3E+02 0.0072 26.2 8.2 86 78-166 126-221 (384)
156 PRK09989 hypothetical protein; 26.3 1.7E+02 0.0037 26.1 5.9 34 127-170 18-51 (258)
157 cd01827 sialate_O-acetylestera 25.9 3.4E+02 0.0074 22.4 7.4 63 79-143 92-154 (188)
158 TIGR00259 thylakoid_BtpA membr 25.5 3.3E+02 0.0072 24.7 7.3 40 127-168 212-256 (257)
159 PF06576 DUF1133: Protein of u 25.3 69 0.0015 26.8 2.7 32 109-140 43-74 (176)
160 COG3410 Uncharacterized conser 25.2 1.5E+02 0.0033 24.7 4.6 32 117-148 145-176 (191)
161 PF02055 Glyco_hydro_30: O-Gly 25.1 95 0.0021 31.1 4.2 89 83-171 156-268 (496)
162 cd06601 GH31_lyase_GLase GLase 25.0 3.8E+02 0.0082 25.3 8.0 74 71-148 55-134 (332)
163 PF07999 RHSP: Retrotransposon 24.1 5E+02 0.011 25.6 8.8 98 244-363 108-215 (439)
164 PF01207 Dus: Dihydrouridine s 24.0 2.8E+02 0.006 25.8 6.9 65 88-168 46-121 (309)
165 TIGR01037 pyrD_sub1_fam dihydr 24.0 4.8E+02 0.01 23.9 8.5 57 95-167 90-155 (300)
166 KOG3189 Phosphomannomutase [Li 23.9 1.2E+02 0.0026 26.3 3.9 50 83-144 160-212 (252)
167 COG1523 PulA Type II secretory 23.7 3E+02 0.0065 28.9 7.5 30 118-147 333-362 (697)
168 TIGR00736 nifR3_rel_arch TIM-b 23.6 4.2E+02 0.0092 23.5 7.6 55 94-165 66-131 (231)
169 PF05763 DUF835: Protein of un 23.5 1E+02 0.0022 24.9 3.4 52 117-168 55-107 (136)
170 PRK14057 epimerase; Provisiona 23.2 3.7E+02 0.0081 24.3 7.2 71 131-219 92-164 (254)
171 PRK13209 L-xylulose 5-phosphat 23.1 1.9E+02 0.0042 26.1 5.7 45 127-171 24-69 (283)
172 smart00518 AP2Ec AP endonuclea 23.1 2.6E+02 0.0056 25.1 6.5 43 128-170 14-56 (273)
173 PF12138 Spherulin4: Spherulat 23.1 5.6E+02 0.012 23.1 10.7 76 78-170 51-134 (253)
174 PF03328 HpcH_HpaI: HpcH/HpaI 23.0 4E+02 0.0086 23.1 7.4 58 129-190 13-70 (221)
175 PRK11177 phosphoenolpyruvate-p 22.5 2.8E+02 0.006 28.5 7.0 94 120-222 365-458 (575)
176 PF06745 KaiC: KaiC; InterPro 22.3 5.1E+02 0.011 22.3 8.3 90 120-222 98-189 (226)
177 TIGR02403 trehalose_treC alpha 22.3 2.4E+02 0.0053 28.6 6.6 52 118-170 168-235 (543)
178 cd01838 Isoamyl_acetate_hydrol 22.2 3.5E+02 0.0076 22.4 6.8 64 79-143 91-162 (199)
179 PF04414 tRNA_deacylase: D-ami 22.2 1.2E+02 0.0026 26.6 3.8 66 97-164 131-207 (213)
180 cd07355 HN_L-delphilin-R2_like 22.2 72 0.0016 22.9 1.9 48 117-164 16-63 (80)
181 PF05984 Cytomega_UL20A: Cytom 22.1 87 0.0019 22.7 2.3 23 1-23 1-23 (100)
182 PRK13210 putative L-xylulose 5 22.0 2.4E+02 0.0052 25.4 6.0 45 127-171 19-64 (284)
183 PRK05581 ribulose-phosphate 3- 21.9 4.7E+02 0.01 22.4 7.7 65 131-220 78-142 (220)
184 PF08902 DUF1848: Domain of un 21.6 4.2E+02 0.0091 24.1 7.2 93 35-137 11-110 (266)
185 PF06415 iPGM_N: BPG-independe 21.4 5.7E+02 0.012 22.6 10.8 78 80-171 14-93 (223)
186 TIGR01163 rpe ribulose-phospha 21.3 3.7E+02 0.008 22.8 6.8 65 130-219 72-136 (210)
187 PRK10933 trehalose-6-phosphate 21.2 2.4E+02 0.0052 28.7 6.3 51 117-168 174-240 (551)
188 PRK02412 aroD 3-dehydroquinate 21.2 6E+02 0.013 22.7 10.6 48 257-307 197-247 (253)
189 PF10354 DUF2431: Domain of un 20.8 4.7E+02 0.01 21.8 7.0 102 84-221 44-154 (166)
190 PLN02428 lipoic acid synthase 20.7 7.4E+02 0.016 23.6 9.6 70 54-147 146-215 (349)
191 cd04724 Tryptophan_synthase_al 20.4 6.1E+02 0.013 22.5 9.7 66 129-219 96-162 (242)
No 1
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2.6e-67 Score=485.69 Aligned_cols=297 Identities=56% Similarity=1.058 Sum_probs=266.9
Q ss_pred CCeEEEEecCCCCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCc
Q 040415 31 PPVKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTS 110 (379)
Q Consensus 31 ~~~~~gy~~~w~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 110 (379)
+-+++|||++|...+.+++++..+||||+|+|+.++++++.+...+.....+..+.+.+|+++|++|+++|||||+.++.
T Consensus 2 ~~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~ 81 (299)
T cd02879 2 TIVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSS 81 (299)
T ss_pred CeEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 35789999999889999999999999999999999987778877766666778888889999999999999999987678
Q ss_pred chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccc
Q 040415 111 IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSV 190 (379)
Q Consensus 111 ~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 190 (379)
.|+.++++++.|++|++++++++++|||||||||||+|..++|+.+|+.||++||++|+++++.+++++++||+++++.+
T Consensus 82 ~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~ 161 (299)
T cd02879 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSP 161 (299)
T ss_pred hhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccch
Confidence 99999999999999999999999999999999999999877899999999999999999887777777899999998755
Q ss_pred ccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeecccccc
Q 040415 191 DFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGR 270 (379)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~ 270 (379)
..........|++++|.++||+|++|+||+||+|....++|++||+.+....+++.+|+.|++.|+|++||+||||+|||
T Consensus 162 ~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr 241 (299)
T cd02879 162 ILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYGR 241 (299)
T ss_pred hhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEeccccc
Confidence 42101124568999999999999999999999998557899999998777789999999999999999999999999999
Q ss_pred ceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCCEEEEECCHHHHHHHHHHHHHcC
Q 040415 271 SWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALG 350 (379)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~Sl~~K~~~~~~~g 350 (379)
.|++ ||+.++++|.+.+++||+|||++|++.|++||+++|
T Consensus 242 ~~~~----------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~ 281 (299)
T cd02879 242 AWTL----------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQKG 281 (299)
T ss_pred cccc----------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhCC
Confidence 9952 788889999999999999999999999999999999
Q ss_pred CceEEEeeccCCCcccH
Q 040415 351 LRGYFFWALSYDNEWKI 367 (379)
Q Consensus 351 l~Gv~iW~l~~Dd~~~l 367 (379)
|||+|+|++++||...|
T Consensus 282 lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 282 LLGYFAWAVGYDDNNWL 298 (299)
T ss_pred CCeEEEEEeecCCcccc
Confidence 99999999999986654
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.4e-66 Score=496.17 Aligned_cols=329 Identities=38% Similarity=0.725 Sum_probs=288.0
Q ss_pred EEEEecCC--C----CCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCc----chHHHHHHHHHHhhcCCCCeEEEEEc
Q 040415 34 KAAYWPSW--A----ESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNS----TAIQLSNFTTTLHHKNPPVKTLFSIG 103 (379)
Q Consensus 34 ~~gy~~~w--~----~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lk~~~~~~kvllsig 103 (379)
++|||+.| . ..+.+.+++..+||||+|+|+.+++++ .+...+. ....+.++. .+|+++|++||++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiG 78 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIG 78 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEc
Confidence 58999999 2 268899999999999999999999876 4443332 234444444 8899999999999999
Q ss_pred CCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC----CcccchHHHHHHHHHHHHHHHHHhcCCCC
Q 040415 104 GAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN----PKEMHDLGLLLDEWRLALEREAKATCQPP 179 (379)
Q Consensus 104 g~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~----~~~~~~~~~fl~~l~~~l~~~~~~~~~~~ 179 (379)
||..++..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.||++||++|++.+ ++
T Consensus 79 G~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~ 153 (362)
T cd02872 79 GWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PR 153 (362)
T ss_pred CCCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cC
Confidence 99865678999999999999999999999999999999999999974 4788999999999999998742 25
Q ss_pred eEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCC------CccHHHHHHHHHH
Q 040415 180 LLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKS------NLSTSYGLKSWLR 253 (379)
Q Consensus 180 ~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~------~~~i~~~v~~~~~ 253 (379)
++|++++|+.+.. ....|++++|.+++|+|+||+||+|++|. ..+++++||+.... ..+++.+|++|++
T Consensus 154 ~~ls~av~~~~~~----~~~~~d~~~l~~~vD~v~vmtYD~~~~~~-~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~ 228 (362)
T cd02872 154 LLLTAAVSAGKET----IDAAYDIPEISKYLDFINVMTYDFHGSWE-GVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLS 228 (362)
T ss_pred eEEEEEecCChHH----HhhcCCHHHHhhhcceEEEecccCCCCCC-CCCCCCCCCCCCCCCccccccccHHHHHHHHHH
Confidence 8999999876544 23568999999999999999999999998 78999999985332 4679999999999
Q ss_pred cCCCCCCeeeeccccccceeccCCCCCCCCCCCCCCC-----CCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCC
Q 040415 254 AGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVG-----PGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGS 328 (379)
Q Consensus 254 ~gv~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~ 328 (379)
.|+|++||+||||+||+.|++.++.++++|+|..+++ +..+|.++|.|||+.+ +.+++..||+.++++|.|+++
T Consensus 229 ~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~ 307 (362)
T cd02872 229 KGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGN 307 (362)
T ss_pred cCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECC
Confidence 9999999999999999999999888888999887654 3357889999999988 789999999999999999999
Q ss_pred EEEEECCHHHHHHHHHHHHHcCCceEEEeeccCCC--------cccHHHHHHHhc
Q 040415 329 TWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN--------EWKISTQVARAW 375 (379)
Q Consensus 329 ~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd--------~~~l~~a~~~~~ 375 (379)
+||+|||++|++.|+++|+++||||+++|++++|| .++|++|+++.|
T Consensus 308 ~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 308 QWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 99999999999999999999999999999999998 577999998864
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=2.8e-64 Score=483.74 Aligned_cols=330 Identities=27% Similarity=0.463 Sum_probs=270.5
Q ss_pred eEEEEecCC------CCCCCCCCCCCCC--CcEEEEEEEeeeCCCcEEEeCCcc----hHHHHHHHHHHhhcCCCCeEEE
Q 040415 33 VKAAYWPSW------AESFPPSAINTNL--FTHIYYAFLMPNNVTYKFNIDNST----AIQLSNFTTTLHHKNPPVKTLF 100 (379)
Q Consensus 33 ~~~gy~~~w------~~~~~~~~~~~~~--~t~ii~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lk~~~~~~kvll 100 (379)
+++|||+.| ...+.+++|+..+ ||||+|+|+.++++++.+...+.. ...+.++. .+|+++|++|+|+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 378999999 2367899999865 999999999999987777664431 23455544 7899999999999
Q ss_pred EEcCCCCC-----CcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-------------------------
Q 040415 101 SIGGAGAD-----TSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN------------------------- 150 (379)
Q Consensus 101 sigg~~~~-----~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~------------------------- 150 (379)
|||||+.. +..|+.++++++.|++||++++++|++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 99999752 457999999999999999999999999999999999999852
Q ss_pred -----CcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCC
Q 040415 151 -----PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWD 225 (379)
Q Consensus 151 -----~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~ 225 (379)
++|+++|+.||++||++|++. +++|++++++.... ...+|+++|+++||||+||+||+|++|.
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~-------~~~ls~av~~~~~~-----~~~~d~~~l~~~vD~inlMtYD~~g~~~ 227 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPD-------GLLLTLTVLPHVNS-----TWYFDVPAIANNVDFVNLATFDFLTPER 227 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccc-------CcEEEEEecCCchh-----ccccCHHHHhhcCCEEEEEEecccCCCC
Confidence 357899999999999999762 47889988654332 2358999999999999999999999987
Q ss_pred C-CCCCCCcccCCCC---CCccHHHHHHHHHHcCCCCCCeeeeccccccceeccCCCC-CCC--CCCC-----CCCCCCC
Q 040415 226 N-TTTGAHAALYDPK---SNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNS-HEI--GSPA-----VDVGPGD 293 (379)
Q Consensus 226 ~-~~~~~~spl~~~~---~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~~~~~~~~-~~~--~~~~-----~~~~~~~ 293 (379)
. ..+++++||+... ...+++.+|+.|++.|+|++||+||||+|||.|++..+.. .+. .++. .|+++.+
T Consensus 228 ~~~~~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~ 307 (413)
T cd02873 228 NPEEADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKT 307 (413)
T ss_pred CCCccCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCC
Confidence 3 3689999998543 2468999999999999999999999999999999886532 221 1233 3444556
Q ss_pred CccccHHHHHHhhhcC--------CcEEEEecCce-eEEEEe-------CCEEEEECCHHHHHHHHHHHHHcCCceEEEe
Q 040415 294 KGLMQFVQVGEFNRMN--------GATVVYDVESV-SAYSFA-------GSTWIGYDDEISATIKIGFAQALGLRGYFFW 357 (379)
Q Consensus 294 ~~~~~y~~i~~~~~~~--------~~~~~~d~~~~-~~y~~~-------~~~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW 357 (379)
+|.++|.|||+.+... .++..||++.+ .+|.|. .++||+|||++|++.|++||+++||||+|+|
T Consensus 308 ~g~l~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W 387 (413)
T cd02873 308 PGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALF 387 (413)
T ss_pred CccccHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEE
Confidence 7899999999977542 34577898875 589883 1469999999999999999999999999999
Q ss_pred eccCCC--------cccHHHHHHHhc
Q 040415 358 ALSYDN--------EWKISTQVARAW 375 (379)
Q Consensus 358 ~l~~Dd--------~~~l~~a~~~~~ 375 (379)
++++|| ..+|++++.+.|
T Consensus 388 ~l~~DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 388 DLSLDDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred eeecCcCCCCcCCCCChHHHHHHhhC
Confidence 999998 377999998764
No 4
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.2e-62 Score=464.72 Aligned_cols=317 Identities=35% Similarity=0.667 Sum_probs=275.3
Q ss_pred eEEEEecCCC---CCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcch--HHHHHHHHHHhhcCCCCeEEEEEcCCCC
Q 040415 33 VKAAYWPSWA---ESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTA--IQLSNFTTTLHHKNPPVKTLFSIGGAGA 107 (379)
Q Consensus 33 ~~~gy~~~w~---~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lk~~~~~~kvllsigg~~~ 107 (379)
+++|||++|. ..+.+++++.++||||+++|+.+++++ ++.+.+... ..+.++ ..+|+++|++|++++|||+..
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQL-KALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHH-HHHHHhCCCCEEEEEEeCCCC
Confidence 4799999992 248999999999999999999999855 777764433 245554 478888899999999999876
Q ss_pred CCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCC-cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Q 040415 108 DTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP-KEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAV 186 (379)
Q Consensus 108 ~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~-~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~ 186 (379)
+..|+.++.+++.|++|+++|++++++|+|||||||||+|... .++.+|..||++||++|+++.+ + +++++||+++
T Consensus 79 -s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~lsi~v 155 (334)
T smart00636 79 -SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYLLTIAV 155 (334)
T ss_pred -CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceEEEEEe
Confidence 6889999999999999999999999999999999999998753 5788999999999999987632 2 3478999999
Q ss_pred ccccccccccccCCcC-hhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCC---CccHHHHHHHHHHcCCCCCCee
Q 040415 187 YFSVDFFVADVYRKYP-VGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKS---NLSTSYGLKSWLRAGVHRSKLV 262 (379)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~---~~~i~~~v~~~~~~gv~~~Kl~ 262 (379)
++.... ....++ ++++.+++|+|++|+||+|++|+ ..++|+|||+.... ..+++.+|+.|++.|+|++||+
T Consensus 156 ~~~~~~----~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~Klv 230 (334)
T smart00636 156 PAGPDK----IDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLV 230 (334)
T ss_pred cCChHH----HHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeE
Confidence 986554 123478 59999999999999999999998 68999999985433 4689999999999999999999
Q ss_pred eeccccccceeccCCCCCCCCCCCCCCCCC-----CCccccHHHHHHhhhcCCcEEEEecCceeEEEEe-C-CEEEEECC
Q 040415 263 MGLPLYGRSWKLKDPNSHEIGSPAVDVGPG-----DKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFA-G-STWIGYDD 335 (379)
Q Consensus 263 lglp~yG~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~y~d 335 (379)
||||+||+.|++.++..+++++|..|++.. .++.++|.|||+.+ +++..||++++++|.|. + ++||+|||
T Consensus 231 lGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~~~~~~v~ydd 307 (334)
T smart00636 231 LGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNPGTGQWVSYDD 307 (334)
T ss_pred EeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEECCCCEEEEcCC
Confidence 999999999999999888899998776432 57889999999865 88999999999999996 4 48999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeccCC
Q 040415 336 EISATIKIGFAQALGLRGYFFWALSYD 362 (379)
Q Consensus 336 ~~Sl~~K~~~~~~~gl~Gv~iW~l~~D 362 (379)
++|++.|+++|+++||||+++|++++|
T Consensus 308 ~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 308 PRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 999999999999999999999999998
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.7e-62 Score=461.01 Aligned_cols=308 Identities=25% Similarity=0.444 Sum_probs=253.5
Q ss_pred eEEEEecCC-----CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCC
Q 040415 33 VKAAYWPSW-----AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGA 107 (379)
Q Consensus 33 ~~~gy~~~w-----~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~ 107 (379)
+++|||+.| +..+.+.+++.++||||+|+|+.+++++ .+...+ ....+.++. .+| ++|+++|||||..
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~k----~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KLK----GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hhc----CcEEEEEEeCCCC
Confidence 479999999 1367899999999999999999999766 777653 233344433 222 3999999999975
Q ss_pred CCc-----chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC----------CcccchHHHHHHHHHHHHHHHH
Q 040415 108 DTS-----IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN----------PKEMHDLGLLLDEWRLALEREA 172 (379)
Q Consensus 108 ~~~-----~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~----------~~~~~~~~~fl~~l~~~l~~~~ 172 (379)
+.. .|+.++ +++.|++||+++++++++|+|||||||||+|.. ++|+++|..||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 322 488877 999999999999999999999999999999853 35789999999999999964
Q ss_pred HhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccC-------CCCCCccHH
Q 040415 173 KATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALY-------DPKSNLSTS 245 (379)
Q Consensus 173 ~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~-------~~~~~~~i~ 245 (379)
+++||+++|+.... ...|+++++.++||+|+||+||+|++|. ..+.+.+|.. ......+++
T Consensus 151 ------~~~ls~a~~~~~~~-----~~~yd~~~l~~~vD~i~vMtYD~~g~w~-~~~~~~~p~~p~~~~~~~~~~~~~~~ 218 (345)
T cd02878 151 ------GKSLSIAAPASYWY-----LKGFPIKDMAKYVDYIVYMTYDLHGQWD-YGNKWASPGCPAGNCLRSHVNKTETL 218 (345)
T ss_pred ------CcEEEEEcCCChhh-----hcCCcHHHHHhhCcEEEEEeecccCCcC-ccCCcCCCCCCcccccccCCCchhHH
Confidence 47899998876544 3568999999999999999999999998 3344444421 111123588
Q ss_pred HHHHHHHHcCCCCCCeeeeccccccceeccCCCCCCCCCCCCCCCC--------CCCccccHHHHHHh-hhcCCcEEEEe
Q 040415 246 YGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGP--------GDKGLMQFVQVGEF-NRMNGATVVYD 316 (379)
Q Consensus 246 ~~v~~~~~~gv~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~y~~i~~~-~~~~~~~~~~d 316 (379)
.+|++|++.|+|++||+||||+|||.|++.++.++++++|..|++. +..+.+.+.|+|.. +..++++..||
T Consensus 219 ~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d 298 (345)
T cd02878 219 DALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYD 298 (345)
T ss_pred HHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEe
Confidence 8999999999999999999999999999999999999999877642 23345556999984 45578999999
Q ss_pred cCceeEEE-EeCCEEEEECCHHHHHHHHHHHHHcCCceEEEeeccCC
Q 040415 317 VESVSAYS-FAGSTWIGYDDEISATIKIGFAQALGLRGYFFWALSYD 362 (379)
Q Consensus 317 ~~~~~~y~-~~~~~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~D 362 (379)
+.++++|. |.+++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 299 ~~~~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 299 TDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCCccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 99999986 67779999999999999999999999999999999987
No 6
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=2.2e-61 Score=452.05 Aligned_cols=284 Identities=36% Similarity=0.621 Sum_probs=247.6
Q ss_pred EEEEecCC---CCCCCCC-CCCCCCCcEEEEEEEeeeCCCcEEEeCC-------------------cchHHHHHHHHHHh
Q 040415 34 KAAYWPSW---AESFPPS-AINTNLFTHIYYAFLMPNNVTYKFNIDN-------------------STAIQLSNFTTTLH 90 (379)
Q Consensus 34 ~~gy~~~w---~~~~~~~-~~~~~~~t~ii~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~lk 90 (379)
|+|||++| ...+.+. +++..+||||+|+|+.+++++..+...+ .....+.++. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 58999999 2334445 6999999999999999998874443221 1224455554 889
Q ss_pred hcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC---------CcccchHHHHH
Q 040415 91 HKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN---------PKEMHDLGLLL 161 (379)
Q Consensus 91 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~---------~~~~~~~~~fl 161 (379)
+++|++|+++|||||+. +..|+.++++++.|++|++++++++++|+|||||||||+|.. ++++.+|+.||
T Consensus 80 ~~~p~lkvl~siGG~~~-s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll 158 (322)
T cd06548 80 QKNPHLKILLSIGGWTW-SGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLL 158 (322)
T ss_pred HhCCCCEEEEEEeCCCC-CCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHH
Confidence 99999999999999976 678999999999999999999999999999999999999975 47889999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCC--
Q 040415 162 DEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK-- 239 (379)
Q Consensus 162 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~-- 239 (379)
++||++|++.++++++ +++||+++|+.... ...+++++|.++||+|++|+||+|++|. ..++|+|||+...
T Consensus 159 ~~Lr~~l~~~~~~~~~-~~~Ls~av~~~~~~-----~~~~~~~~l~~~vD~vnlMtYD~~g~w~-~~~g~~spL~~~~~~ 231 (322)
T cd06548 159 KELREALDALGAETGR-KYLLTIAAPAGPDK-----LDKLEVAEIAKYLDFINLMTYDFHGAWS-NTTGHHSNLYASPAD 231 (322)
T ss_pred HHHHHHHHHhhhccCC-ceEEEEEccCCHHH-----HhcCCHHHHhhcCCEEEEEEeeccCCCC-CCCCCCCCCCCCCCC
Confidence 9999999987765554 48999999886654 3457899999999999999999999999 7999999998543
Q ss_pred --CCccHHHHHHHHHHcCCCCCCeeeeccccccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEec
Q 040415 240 --SNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDV 317 (379)
Q Consensus 240 --~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~ 317 (379)
...+++.+++.|++.|+|++||+||||+|||.|++ ++..||+
T Consensus 232 ~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~------------------------------------~~~~~D~ 275 (322)
T cd06548 232 PPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG------------------------------------YTRYWDE 275 (322)
T ss_pred CCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC------------------------------------cEEEEcC
Confidence 35789999999999999999999999999999952 5889999
Q ss_pred CceeEEEEeC--CEEEEECCHHHHHHHHHHHHHcCCceEEEeeccCC
Q 040415 318 ESVSAYSFAG--STWIGYDDEISATIKIGFAQALGLRGYFFWALSYD 362 (379)
Q Consensus 318 ~~~~~y~~~~--~~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~D 362 (379)
.++++|.|++ ++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 276 ~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 276 VAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred CcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 9999999977 78999999999999999999999999999999998
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.9e-61 Score=441.52 Aligned_cols=343 Identities=30% Similarity=0.473 Sum_probs=277.2
Q ss_pred CCCCCeEEEEecCC---CC-CCCCCCCCCCCCcEEEEEEEeeeCCCcEEE----e---------------CCcc--hHHH
Q 040415 28 ASPPPVKAAYWPSW---AE-SFPPSAINTNLFTHIYYAFLMPNNVTYKFN----I---------------DNST--AIQL 82 (379)
Q Consensus 28 ~~~~~~~~gy~~~w---~~-~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~----~---------------~~~~--~~~~ 82 (379)
...+++++|||++| .+ .|.+.+||+.++|||.|+|+.+.+++.... . .++. ....
T Consensus 34 ~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~ 113 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGH 113 (441)
T ss_pred CCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccch
Confidence 45569999999999 34 788999999999999999999998873211 0 0111 2233
Q ss_pred HHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC---------Ccc
Q 040415 83 SNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN---------PKE 153 (379)
Q Consensus 83 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~---------~~~ 153 (379)
...+..+|+++|++|+++|||||+. +..|+.++.+.+.|++|+++++++|++|+|||||||||||++ +.+
T Consensus 114 ~~~L~~lk~~~~d~k~l~SIGGWs~-S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d 192 (441)
T COG3325 114 FGALFDLKATYPDLKTLISIGGWSD-SGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKD 192 (441)
T ss_pred HHHHHHHhhhCCCceEEEeeccccc-CCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCccc
Confidence 4456689999999999999999988 899999999999999999999999999999999999999974 567
Q ss_pred cchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCc
Q 040415 154 MHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHA 233 (379)
Q Consensus 154 ~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~s 233 (379)
+++|+.||++||++|..++-++||+ +.||+|.|+.... ....+..+++++|||||+||||+||.|. ..+||++
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~-Y~LTiA~~as~~~-----l~~~~~~~~~~~vDyiNiMTYDf~G~Wn-~~~Gh~a 265 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRH-YQLTIAAPASKDK-----LEGLNHAEIAQYVDYINIMTYDFHGAWN-ETLGHHA 265 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCce-EEEEEecCCchhh-----hhcccHHHHHHHHhhhheeeeecccccc-ccccccc
Confidence 8899999999999999999998874 9999999998877 4588899999999999999999999999 8999999
Q ss_pred ccCCC-----CC--CccHH------HHHHHHHHcCCCCCCeeeeccccccceeccCCCCCC----CCCCCC--CCCCC--
Q 040415 234 ALYDP-----KS--NLSTS------YGLKSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHE----IGSPAV--DVGPG-- 292 (379)
Q Consensus 234 pl~~~-----~~--~~~i~------~~v~~~~~~gv~~~Kl~lglp~yG~~~~~~~~~~~~----~~~~~~--~~~~~-- 292 (379)
|||+. .. ...++ .-++.....++||+||+||+|+|||.|........+ ..+... |...+
T Consensus 266 ~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw 345 (441)
T COG3325 266 ALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTW 345 (441)
T ss_pred ccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcc
Confidence 99941 11 12222 244555667899999999999999999988765532 111111 11111
Q ss_pred CCccc--cHH---HHH-HhhhcCCcEEEEecCceeEEEEeC--CEEEEECCHHHHHHHHHHHHHcCCceEEEeeccCCCc
Q 040415 293 DKGLM--QFV---QVG-EFNRMNGATVVYDVESVSAYSFAG--STWIGYDDEISATIKIGFAQALGLRGYFFWALSYDNE 364 (379)
Q Consensus 293 ~~~~~--~y~---~i~-~~~~~~~~~~~~d~~~~~~y~~~~--~~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd~ 364 (379)
..+.+ .|. .+- .....+++++.||++.++||+|+. +.+|+|||++|++.|.+||++.+|||+|+|.+++|.+
T Consensus 346 ~a~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n 425 (441)
T COG3325 346 EAGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDEN 425 (441)
T ss_pred cccccCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcc
Confidence 11111 221 222 233467999999999999999954 5599999999999999999999999999999999999
Q ss_pred ccHHHHHHHhcccC
Q 040415 365 WKISTQVARAWIRN 378 (379)
Q Consensus 365 ~~l~~a~~~~~~~~ 378 (379)
..|++|+++.+.-+
T Consensus 426 ~~llna~~~~l~~~ 439 (441)
T COG3325 426 GVLLNAVNEGLGFN 439 (441)
T ss_pred hhHHHHhhcccCCC
Confidence 99999999998743
No 8
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.9e-61 Score=460.27 Aligned_cols=334 Identities=28% Similarity=0.512 Sum_probs=285.1
Q ss_pred CCeEEEEecCCCCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCc
Q 040415 31 PPVKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTS 110 (379)
Q Consensus 31 ~~~~~gy~~~w~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 110 (379)
...++||+..|.....+.+++..+|||+||+|+.++.++..+...+.....+.++.+.+|.++|++|+|+|||||..++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns~ 136 (432)
T KOG2806|consen 57 EKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNSG 136 (432)
T ss_pred cceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCcc
Confidence 35567888775337888999999999999999999988844444444566788889999999999999999999954488
Q ss_pred chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC-CCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Q 040415 111 IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ-NPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFS 189 (379)
Q Consensus 111 ~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~-~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 189 (379)
.|+.+++|++.|+.||+++++++++|+|||||||||+|. .+.|+.+|..|+++||++|.++.+.+.++...|+.++...
T Consensus 137 ~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~~ 216 (432)
T KOG2806|consen 137 LFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVADS 216 (432)
T ss_pred chhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeeccccC
Confidence 999999999999999999999999999999999999995 4589999999999999999999888777765566555544
Q ss_pred cc-cccccccCCcChhhhhhcCcEEEeecccccCCCCCC-CCCCCcccCCCC----CCccHHHHHHHHHHcCCCCCCeee
Q 040415 190 VD-FFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNT-TTGAHAALYDPK----SNLSTSYGLKSWLRAGVHRSKLVM 263 (379)
Q Consensus 190 ~~-~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~-~~~~~spl~~~~----~~~~i~~~v~~~~~~gv~~~Kl~l 263 (379)
.. . ...+||+++|.+++||||||+||++|+|.++ .+||.|||+.+. ..++++.++++|++.|.|++|++|
T Consensus 217 ~~~~----~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~ 292 (432)
T KOG2806|consen 217 KQSA----YSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVL 292 (432)
T ss_pred ccch----hhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEE
Confidence 33 3 2678999999999999999999999999942 899999999643 357999999999999999999999
Q ss_pred eccccccceeccCCCCCCCCCCCCCCC------CCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEe--CCEEEEECC
Q 040415 264 GLPLYGRSWKLKDPNSHEIGSPAVDVG------PGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFA--GSTWIGYDD 335 (379)
Q Consensus 264 glp~yG~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~y~d 335 (379)
|+|+||+.|++.+...+ ++.+..+++ ...++.++|.|||+.....+ ...||+.++.+|+|+ +++||+|||
T Consensus 293 gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~~Y~~~~~~~~wvtyen 370 (432)
T KOG2806|consen 293 ALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQTPYLYNIPYDQWVTYEN 370 (432)
T ss_pred EEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCceeeeEEecCCCeEEecCC
Confidence 99999999999997665 544443332 22578999999999665445 789999999999999 899999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeccCCCccc-HHHH
Q 040415 336 EISATIKIGFAQALGLRGYFFWALSYDNEWK-ISTQ 370 (379)
Q Consensus 336 ~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd~~~-l~~a 370 (379)
++|++.|++||++++|||+++|++++||... +|++
T Consensus 371 ~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~ 406 (432)
T KOG2806|consen 371 ERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNA 406 (432)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccc
Confidence 9999999999999999999999999997554 4554
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=7.7e-57 Score=427.11 Aligned_cols=322 Identities=34% Similarity=0.621 Sum_probs=274.0
Q ss_pred CeEEEEecCCC---CC-CCCCCCCCCCCcEEEEEEEeeeCCCcEEE-----eCCcchHHHHHHHHHHhhcCCCCeEEEEE
Q 040415 32 PVKAAYWPSWA---ES-FPPSAINTNLFTHIYYAFLMPNNVTYKFN-----IDNSTAIQLSNFTTTLHHKNPPVKTLFSI 102 (379)
Q Consensus 32 ~~~~gy~~~w~---~~-~~~~~~~~~~~t~ii~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lk~~~~~~kvllsi 102 (379)
.+++|||+.|. .. +.+++++.+.||||+++|+.++.++.... ..........+.+..+|+++|++||++||
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsi 80 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSI 80 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEe
Confidence 36899999992 22 67899999999999999999998885542 23333444455556888888999999999
Q ss_pred cCCCCCCc-chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCC---cccchHHHHHHHHHHHHHHHHHhcCCC
Q 040415 103 GGAGADTS-IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP---KEMHDLGLLLDEWRLALEREAKATCQP 178 (379)
Q Consensus 103 gg~~~~~~-~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~---~~~~~~~~fl~~l~~~l~~~~~~~~~~ 178 (379)
||+.. +. .|..++.+++.|++|+++|++++++|||||||||||++... .++.+|..||++||++|++..+.. +
T Consensus 81 gg~~~-~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~--~ 157 (343)
T PF00704_consen 81 GGWGM-SSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG--K 157 (343)
T ss_dssp EETTS-SHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred ccccc-cccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--c
Confidence 99976 55 89999999999999999999999999999999999999762 489999999999999999976544 2
Q ss_pred CeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCC---CCccHHHHHHHHHHcC
Q 040415 179 PLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK---SNLSTSYGLKSWLRAG 255 (379)
Q Consensus 179 ~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~---~~~~i~~~v~~~~~~g 255 (379)
+++|++++|+.+.. ...++++++.++||+|++|+||++++|. ..++|++||++.. ...+++.+++.|+..|
T Consensus 158 ~~~ls~a~p~~~~~-----~~~~~~~~l~~~vD~v~~m~yD~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g 231 (343)
T PF00704_consen 158 GYILSVAVPPSPDY-----YDKYDYKELAQYVDYVNLMTYDYHGPWS-DVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAG 231 (343)
T ss_dssp TSEEEEEEECSHHH-----HTTHHHHHHHTTSSEEEEETTSSSSTTS-SBETTSSSSSHTTTSGTSSSHHHHHHHHHHTT
T ss_pred eeEEeecccccccc-----ccccccccccccccccccccccCCCCcc-cccccccccccCCccCCCceeeeehhhhcccc
Confidence 58999999887665 3455899999999999999999999888 5899999998655 3678999999999999
Q ss_pred CCCCCeeeeccccccceeccCCCCCCCCCCC---CCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeC--CEE
Q 040415 256 VHRSKLVMGLPLYGRSWKLKDPNSHEIGSPA---VDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAG--STW 330 (379)
Q Consensus 256 v~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~--~~~ 330 (379)
+|++||+||+|+||+.|++.+...+...++. .+.++..++.++|.++|+.++.+++...||+.++++|.+.. ++|
T Consensus 232 ~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~ 311 (343)
T PF00704_consen 232 VPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKHW 311 (343)
T ss_dssp STGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTEE
T ss_pred CChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCeE
Confidence 9999999999999999999998777665543 34455668999999999999889999999999999999977 789
Q ss_pred EEECCHHHHHHHHHHHHHcCCceEEEeeccCC
Q 040415 331 IGYDDEISATIKIGFAQALGLRGYFFWALSYD 362 (379)
Q Consensus 331 i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~D 362 (379)
|+|||++|+++|+++++++||||+++|++++|
T Consensus 312 i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 312 ISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 99999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=5e-56 Score=415.38 Aligned_cols=295 Identities=19% Similarity=0.302 Sum_probs=244.0
Q ss_pred eEEEEecCC-CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEE--EEEcCCCCCC
Q 040415 33 VKAAYWPSW-AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTL--FSIGGAGADT 109 (379)
Q Consensus 33 ~~~gy~~~w-~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl--lsigg~~~~~ 109 (379)
.++|||++| ...+.+.+++..+||||+++|+.++++++.+...+..+.. ..++..+|+++|++||+ +++|||+ .
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~-~~~~~~lk~~~~~lkvlp~i~~gg~~--~ 80 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDID-KGWIEEVRKANKNIKILPRVLFEGWS--Y 80 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchh-hHHHHHHHhhCCCcEEEeEEEECCCC--H
Confidence 468999999 4567888889999999999999999877655554322111 23566889999999999 6779986 4
Q ss_pred cchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEe-ecCCCC---CcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Q 040415 110 SIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLD-WEFPQN---PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAA 185 (379)
Q Consensus 110 ~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD-~E~~~~---~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a 185 (379)
+.|+.++++++.|++||+++++++++||||||||| ||+|.. ++++.+|+.||++||++|++. ++.++++
T Consensus 81 ~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~-------~~~l~~~ 153 (318)
T cd02876 81 QDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA-------NLKLILV 153 (318)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc-------CCEEEEE
Confidence 47999999999999999999999999999999999 999864 358899999999999999863 4678888
Q ss_pred ecccccc-ccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcC-CCCCCeee
Q 040415 186 VYFSVDF-FVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAG-VHRSKLVM 263 (379)
Q Consensus 186 ~~~~~~~-~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~g-v~~~Kl~l 263 (379)
+++.... ........+|+++|+++||+|+||+||+|++ ..+||+||++ +++.+++++++.| +|++||+|
T Consensus 154 v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~g~~apl~------~v~~~v~~~~~~~~vp~~Klvl 224 (318)
T cd02876 154 IPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRPGPNAPLS------WVRSCLELLLPESGKKRAKILL 224 (318)
T ss_pred EcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCCCCCCCcH------HHHHHHHHHHhcCCCCHHHeEE
Confidence 8764421 0001234689999999999999999999986 4899999997 7999999999987 99999999
Q ss_pred eccccccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCc-eeEEEEeC---CEEEEECCHHHH
Q 040415 264 GLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVES-VSAYSFAG---STWIGYDDEISA 339 (379)
Q Consensus 264 glp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~-~~~y~~~~---~~~i~y~d~~Sl 339 (379)
|||+|||.|++.+ . .+.++..+.++++++.+++..||+++ ..+|.|.+ ++||||||++|+
T Consensus 225 Gip~YG~~w~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si 288 (318)
T cd02876 225 GLNFYGNDYTLPG-----G-----------GGAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSI 288 (318)
T ss_pred eccccccccccCC-----C-----------CceeehHHHHHHHHhcCCCceeccCCCcceEEEecCCCcEEEEeCCHHHH
Confidence 9999999997653 1 12334456666666778899999996 55688855 689999999999
Q ss_pred HHHHHHHHHcCCceEEEeeccCCC
Q 040415 340 TIKIGFAQALGLRGYFFWALSYDN 363 (379)
Q Consensus 340 ~~K~~~~~~~gl~Gv~iW~l~~Dd 363 (379)
+.|+++|+++|+ |+|+|++|+++
T Consensus 289 ~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 289 QLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHHcCC-cEEEEcccCCc
Confidence 999999999999 99999999995
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=6.7e-53 Score=397.73 Aligned_cols=298 Identities=21% Similarity=0.298 Sum_probs=236.7
Q ss_pred CCeEEEEecCCCCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCc
Q 040415 31 PPVKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTS 110 (379)
Q Consensus 31 ~~~~~gy~~~w~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 110 (379)
.+.++||... .......++.++|||.++ + + .+ .+++..+|+ +++||+++ ++. +
T Consensus 35 ~~~~~~~~~~---~~~~~~~~~~~~tti~~~-------~-~---~~------~~~~~~A~~--~~v~v~~~-~~~---~- 87 (358)
T cd02875 35 RFEFLVFSVN---STNYPNYDWSKVTTIAIF-------G-D---ID------DELLCYAHS--KGVRLVLK-GDV---P- 87 (358)
T ss_pred ceEEEEEEeC---CCcCcccccccceEEEec-------C-C---CC------HHHHHHHHH--cCCEEEEE-Ccc---C-
Confidence 3667999975 355567778899999976 1 0 01 344544444 68999987 222 1
Q ss_pred chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC--CcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Q 040415 111 IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN--PKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYF 188 (379)
Q Consensus 111 ~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~--~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~ 188 (379)
...+.+++.|++||+++++++++|||||||||||+|.. ++++++|+.||++||++|++.+ ++++||++++.
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~Lsvav~~ 160 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQISFDVAW 160 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEec
Confidence 24578999999999999999999999999999999974 4678999999999999998742 35789999886
Q ss_pred ccccccccccCCcChhhhhhcCcEEEeecccccCC-CC-CCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeecc
Q 040415 189 SVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGG-WD-NTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLP 266 (379)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~-~~-~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp 266 (379)
.+... ....||+++|+++||+|+||+||+|+. |. ...++|++|+. +++.+++.|++.|+|++||+||+|
T Consensus 161 ~p~~~---~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~------~v~~~v~~~~~~gvp~~KLvLGip 231 (358)
T cd02875 161 SPSCI---DKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS------QTLSGYNNFTKLGIDPKKLVMGLP 231 (358)
T ss_pred Ccccc---cccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch------hHHHHHHHHHHcCCCHHHeEEEeC
Confidence 54431 123599999999999999999999975 65 34688999986 799999999999999999999999
Q ss_pred ccccceeccCCCC-----CCCCCCCCCCC-C-CCCccccHHHHHHhhhcCCcEEEEecCceeEEE-EeC---C-EEEEEC
Q 040415 267 LYGRSWKLKDPNS-----HEIGSPAVDVG-P-GDKGLMQFVQVGEFNRMNGATVVYDVESVSAYS-FAG---S-TWIGYD 334 (379)
Q Consensus 267 ~yG~~~~~~~~~~-----~~~~~~~~~~~-~-~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~-~~~---~-~~i~y~ 334 (379)
+|||+|++.+... ..++.|..|.. + ..++.++|.|||+.++..+++..||+.++++|. |.+ . +|||||
T Consensus 232 ~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~yd 311 (358)
T cd02875 232 WYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVWYD 311 (358)
T ss_pred CCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEEeC
Confidence 9999999766541 12333433321 1 124578999999998878889999999999987 432 2 599999
Q ss_pred CHHHHHHHHHHHHHcCCceEEEeeccCCCcccHHHHH
Q 040415 335 DEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQV 371 (379)
Q Consensus 335 d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd~~~l~~a~ 371 (379)
|++|++.|+++|+++||||+|+|++|+||......|.
T Consensus 312 D~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 312 NPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEEeccccccCCCchhh
Confidence 9999999999999999999999999999988777655
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=5e-53 Score=394.89 Aligned_cols=294 Identities=21% Similarity=0.335 Sum_probs=243.1
Q ss_pred eEEEEecCC-CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCC---CC
Q 040415 33 VKAAYWPSW-AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAG---AD 108 (379)
Q Consensus 33 ~~~gy~~~w-~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~---~~ 108 (379)
.++|||++| ...+.......+++|||++.++.++++| .+.... ..+++..+|++ ++|++++|||+. ++
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g-~~~~~~-----~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADG-TLTGLP-----DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCC-CCCCCC-----CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 478999998 3345555556789999999999999877 433221 24566666664 899999999986 45
Q ss_pred CcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecc
Q 040415 109 TSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYF 188 (379)
Q Consensus 109 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~ 188 (379)
++.|+.++.+++.|++|++++++++++|||||||||||++.. +++.+|..||++||.+|++. +++|++++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~~-~d~~~~~~fl~~lr~~l~~~-------~~~lsv~~~p 146 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVPP-EDREAYTQFLRELSDRLHPA-------GYTLSTAVVP 146 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCCH-HHHHHHHHHHHHHHHHhhhc-------CcEEEEEecC
Confidence 778899999999999999999999999999999999999874 78999999999999999862 4788888765
Q ss_pred ccccc-cccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccc
Q 040415 189 SVDFF-VADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPL 267 (379)
Q Consensus 189 ~~~~~-~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~ 267 (379)
..... .......|++++++++||+|++|+||+|++|+ .++|++|+. +++..+++++ .|+|++||+||||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~--~~gp~a~~~------~~~~~~~~~~-~gvp~~KlvlGip~ 217 (313)
T cd02874 147 KTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGG--PPGPVAPIG------WVERVLQYAV-TQIPREKILLGIPL 217 (313)
T ss_pred ccccccccccccccCHHHHHhhCCEEEEEEeccCCCCC--CCCccCChH------HHHHHHHHHH-hcCCHHHEEEeecc
Confidence 43210 00013568999999999999999999999875 789999986 6888888776 78999999999999
Q ss_pred cccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEE-EeC----CEEEEECCHHHHHHH
Q 040415 268 YGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYS-FAG----STWIGYDDEISATIK 342 (379)
Q Consensus 268 yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~-~~~----~~~i~y~d~~Sl~~K 342 (379)
||+.|++.++. ....+.++|.++++++.+.+++..||+.++++|. |.+ .+||+|||++|++.|
T Consensus 218 YG~~w~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K 285 (313)
T cd02874 218 YGYDWTLPYKK------------GGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAK 285 (313)
T ss_pred cccccccCCCC------------CcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHH
Confidence 99999875421 1124678899999999999999999999988875 432 369999999999999
Q ss_pred HHHHHHcCCceEEEeeccCCC
Q 040415 343 IGFAQALGLRGYFFWALSYDN 363 (379)
Q Consensus 343 ~~~~~~~gl~Gv~iW~l~~Dd 363 (379)
+++++++||||+++|++++||
T Consensus 286 ~~~~~~~~lgGv~iW~lg~dD 306 (313)
T cd02874 286 FELAKEYGLRGVSYWRLGLED 306 (313)
T ss_pred HHHHHHcCCCeEEEEECCCCC
Confidence 999999999999999999997
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=4.9e-49 Score=363.93 Aligned_cols=288 Identities=18% Similarity=0.219 Sum_probs=231.8
Q ss_pred EEEEecCC-CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcch
Q 040415 34 KAAYWPSW-AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIF 112 (379)
Q Consensus 34 ~~gy~~~w-~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 112 (379)
++|||++| ...+.........+|||++.|+.+...++.+....+ .....++..+|.+.|.++++.+++|+..++..|
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d--~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~ 79 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD--PQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNI 79 (298)
T ss_pred eeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC--hHHHHHHHHHHcCCceeEEEEecCCCCCCHHHH
Confidence 68999999 445555555567999999999999855557765322 122344557777778888888998876656789
Q ss_pred hhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccc
Q 040415 113 VDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDF 192 (379)
Q Consensus 113 ~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~ 192 (379)
+.++++++.|++|++++++++++|||||||||||++.. +++++|+.||++||++|++. ++.|++++|+...
T Consensus 80 ~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~~-~d~~~~~~fl~eL~~~l~~~-------~~~lsv~v~~~~~- 150 (298)
T cd06549 80 ARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPA-DDLPKYVAFLSELRRRLPAQ-------GKQLTVTVPADEA- 150 (298)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCh-hHHHHHHHHHHHHHHHhhhc-------CcEEEEEecCCCC-
Confidence 99999999999999999999999999999999999864 88999999999999999863 4789999886443
Q ss_pred ccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccccccce
Q 040415 193 FVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSW 272 (379)
Q Consensus 193 ~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~ 272 (379)
.+|++++.+++|+|+||+||+|++++ .++|.+|+. +++..++... .++|++||+||||+||++|
T Consensus 151 -------~~d~~~l~~~~D~v~lMtYD~~~~~~--~~gp~a~~~------~~~~~~~~~~-~~vp~~KlvlGip~YG~~w 214 (298)
T cd06549 151 -------DWNLKALARNADKLILMAYDEHYQGG--APGPIASQD------WFESNLAQAV-KKLPPEKLIVALGSYGYDW 214 (298)
T ss_pred -------CCCHHHHHHhCCEEEEEEeccCCCCC--CCCCCCChh------hHHHHHHHHH-hCCCHHHEEEEecccCccc
Confidence 47999999999999999999998765 667777764 6777777754 6799999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCc-eeEEEE-eC---CEEEEECCHHHHHHHHHHHH
Q 040415 273 KLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVES-VSAYSF-AG---STWIGYDDEISATIKIGFAQ 347 (379)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~-~~~y~~-~~---~~~i~y~d~~Sl~~K~~~~~ 347 (379)
++... ...++..+...++.+.+....||+.. ...|.| ++ .++|||+|++|++.|+++|+
T Consensus 215 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~ 278 (298)
T cd06549 215 TKGGN----------------TKAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQ 278 (298)
T ss_pred cCCCC----------------CcccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHH
Confidence 76431 12344556666666677788887766 444555 22 25999999999999999999
Q ss_pred HcCCceEEEeeccCCCc
Q 040415 348 ALGLRGYFFWALSYDNE 364 (379)
Q Consensus 348 ~~gl~Gv~iW~l~~Dd~ 364 (379)
++||+|+++|++|+||.
T Consensus 279 ~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 279 RLGPAGVALWRLGSEDP 295 (298)
T ss_pred HcCCCcEEEEeccCCCC
Confidence 99999999999999974
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=4.2e-48 Score=350.38 Aligned_cols=249 Identities=27% Similarity=0.440 Sum_probs=209.3
Q ss_pred EEEEecCC-CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcch
Q 040415 34 KAAYWPSW-AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIF 112 (379)
Q Consensus 34 ~~gy~~~w-~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~ 112 (379)
++|||++| .....+++++..+||||+++|+.++++| .+...+. ...+..+++.+|+ +++||+++|||+.. +.+
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~--~~~ 74 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSP--PEF 74 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCC--Ccc
Confidence 58999999 3334688999999999999999999877 7766532 2345566666655 58999999999864 346
Q ss_pred hhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccc
Q 040415 113 VDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDF 192 (379)
Q Consensus 113 ~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~ 192 (379)
..++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||++|++. +++|++++++....
T Consensus 75 ~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~-------~~~lt~av~~~~~~ 145 (253)
T cd06545 75 TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKE-------GKLLTAAVSSWNGG 145 (253)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhc-------CcEEEEEccCcccc
Confidence 678999999999999999999999999999999998752 789999999999999863 46899988764332
Q ss_pred ccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCC-CCCCeeeeccccccc
Q 040415 193 FVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGV-HRSKLVMGLPLYGRS 271 (379)
Q Consensus 193 ~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv-~~~Kl~lglp~yG~~ 271 (379)
+...++.+++|+|+||+||++++|....++|++|+. +++..+++|+..|+ |++||+||||+||+.
T Consensus 146 --------~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~ 211 (253)
T cd06545 146 --------AVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD------DAVNDLNYWNERGLASKDKLVLGLPFYGYG 211 (253)
T ss_pred --------cccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH------hHHHHHHHHHHcCCCCHHHEEEEeCCcccc
Confidence 123567889999999999999999755789999986 68999999999988 999999999999998
Q ss_pred eeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCCEEEEECCHHHHHHHHHHHHHcCC
Q 040415 272 WKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQALGL 351 (379)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~Sl~~K~~~~~~~gl 351 (379)
|. |+++.+++.|++++++. +
T Consensus 212 w~-----------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 212 FY-----------------------------------------------------------YNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred cc-----------------------------------------------------------CCCHHHHHHHHHHHHHh-c
Confidence 82 67788999999999999 9
Q ss_pred ceEEEeeccCC--CcccHHHHH
Q 040415 352 RGYFFWALSYD--NEWKISTQV 371 (379)
Q Consensus 352 ~Gv~iW~l~~D--d~~~l~~a~ 371 (379)
||+|+|++++| +..+|++|+
T Consensus 232 gG~~~w~~~~d~~~~~~l~~~~ 253 (253)
T cd06545 232 GGVMIWELSQDASGENSLLNAI 253 (253)
T ss_pred CeEEEEeccCCCCCCcchhhcC
Confidence 99999999999 456888764
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=9.1e-37 Score=269.48 Aligned_cols=206 Identities=35% Similarity=0.559 Sum_probs=170.3
Q ss_pred EEEEecCCCCCC--CCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcc
Q 040415 34 KAAYWPSWAESF--PPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSI 111 (379)
Q Consensus 34 ~~gy~~~w~~~~--~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~ 111 (379)
++|||..|.... .+..++...||||+++|+.+++++................+..+++++|++||++||||+.. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~-~~~ 79 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTD-SSP 79 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCC-CCC
Confidence 489999992222 26788899999999999999987744331222223344555678887799999999999876 334
Q ss_pred hhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCc--ccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Q 040415 112 FVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK--EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFS 189 (379)
Q Consensus 112 ~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~--~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 189 (379)
+ .++.+++.|++|++++++++++|+|||||||||++.... ++.+|..|+++||++|++. +++||+++++.
T Consensus 80 ~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~-------~~~ls~a~~~~ 151 (210)
T cd00598 80 F-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA-------NYLLTIAVPAS 151 (210)
T ss_pred c-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc-------CcEEEEEecCC
Confidence 4 889999999999999999999999999999999988633 4899999999999999752 58999999886
Q ss_pred cccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccccc
Q 040415 190 VDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYG 269 (379)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG 269 (379)
.... ...+++.++.+++|++++|+|| |+||+|+|
T Consensus 152 ~~~~----~~~~~~~~l~~~vD~v~vm~Yd-----------------------------------------l~~g~~~~- 185 (210)
T cd00598 152 YFDL----GYAYDVPAIGDYVDFVNVMTYD-----------------------------------------LVLGVPFY- 185 (210)
T ss_pred hHHh----hccCCHHHHHhhCCEEEEeeec-----------------------------------------ccccchhh-
Confidence 6551 2248899999999999999997 88999886
Q ss_pred cceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCCEEEEECCHHHHHHHHHHHHHc
Q 040415 270 RSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQAL 349 (379)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~Sl~~K~~~~~~~ 349 (379)
|++.|+++++++
T Consensus 186 --------------------------------------------------------------------s~~~k~~~~~~~ 197 (210)
T cd00598 186 --------------------------------------------------------------------SLGAKAKYAKQK 197 (210)
T ss_pred --------------------------------------------------------------------hHHHHHHHHHHc
Confidence 899999999999
Q ss_pred CCceEEEeeccCC
Q 040415 350 GLRGYFFWALSYD 362 (379)
Q Consensus 350 gl~Gv~iW~l~~D 362 (379)
++||||+|++++|
T Consensus 198 ~~gGv~~w~~~~d 210 (210)
T cd00598 198 GLGGVMIWELDQD 210 (210)
T ss_pred CCceEEEEeccCC
Confidence 9999999999987
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=2.5e-36 Score=275.97 Aligned_cols=241 Identities=21% Similarity=0.310 Sum_probs=199.7
Q ss_pred CCeEEEEE--cC---CCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHH
Q 040415 95 PVKTLFSI--GG---AGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALE 169 (379)
Q Consensus 95 ~~kvllsi--gg---~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~ 169 (379)
+++.++.+ ++ .+++.+..+.++.++..++++++++++.++.+|+.|+.||+|... +.|++.|..|++++|.+|+
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~-~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVG-PGDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCC-HHHHHHHHHHHHHHHHHhc
Confidence 35555444 33 233356679999999999999999999999999999999999887 4999999999999999998
Q ss_pred HHHHhcCCCCeEEEEeecccccccccc-ccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHH
Q 040415 170 REAKATCQPPLLFTAAVYFSVDFFVAD-VYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGL 248 (379)
Q Consensus 170 ~~~~~~~~~~~~ls~a~~~~~~~~~~~-~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v 248 (379)
+ .++.+++|+++....+..+ +...+|+..+++++|+|.+|+||.|..|+ .+|+.||+. +|+..+
T Consensus 239 ~-------~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG--~PG~vA~i~------~vr~~i 303 (423)
T COG3858 239 S-------GGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGG--PPGPVASIG------WVRKVI 303 (423)
T ss_pred c-------CCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCCC--CCCcccCch------hHhhhh
Confidence 7 4589999999865432222 46789999999999999999999998775 899999997 899999
Q ss_pred HHHHHcCCCCCCeeeeccccccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEE---
Q 040415 249 KSWLRAGVHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSF--- 325 (379)
Q Consensus 249 ~~~~~~gv~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~--- 325 (379)
++.+.. +|++||+||+|+||++|.+..+.. +.. ...++..+..++.+..+++..||..+++||.|
T Consensus 304 eya~T~-iP~~Kv~mGip~YGYDW~~~y~~~----------g~~-~~a~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D 371 (423)
T COG3858 304 EYALTV-IPAEKVMMGIPLYGYDWTLPYDPL----------GYL-ARAISPDEAIDIANRYNATIQYDATSQSPFFYYVD 371 (423)
T ss_pred hhhhee-cchHHeEEccccccccccCCCCCC----------cce-eeecCcchhhhhhcccCCccCcCccccCceEEEEc
Confidence 999885 999999999999999998765321 111 11255556566666778999999999999876
Q ss_pred -eC-CEEEEECCHHHHHHHHHHHHHcCCceEEEeeccCCC
Q 040415 326 -AG-STWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363 (379)
Q Consensus 326 -~~-~~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd 363 (379)
++ .++|||||.+|++.|++++|++||.||++|.|+++|
T Consensus 372 ~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~ 411 (423)
T COG3858 372 KEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQED 411 (423)
T ss_pred CCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcc
Confidence 23 459999999999999999999999999999999996
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=3.2e-33 Score=251.72 Aligned_cols=203 Identities=19% Similarity=0.259 Sum_probs=146.9
Q ss_pred eEEEEecCC--CCC-----CCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcc--hHHHHHHHHHHhh-cCCCCeEEEEE
Q 040415 33 VKAAYWPSW--AES-----FPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNST--AIQLSNFTTTLHH-KNPPVKTLFSI 102 (379)
Q Consensus 33 ~~~gy~~~w--~~~-----~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lk~-~~~~~kvllsi 102 (379)
++||||+.| +.. +++..++..+||||+|+|+.++.+| .+.+.+.. ...+.++.+.++. +++++|||+||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 479999999 222 2233456789999999999999866 77776432 1122223322222 45899999999
Q ss_pred cCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 040415 103 GGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLF 182 (379)
Q Consensus 103 gg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~l 182 (379)
|||.. ..|+.++++++.|++|++++++++++|+|||||||||+|.. ..+|..|+++||+.++. +++|
T Consensus 80 GG~~~--~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~~---~~~~~~ll~~Lr~~~~~--------~~~l 146 (256)
T cd06546 80 GGAAP--GSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPMS---LDGIIRLIDRLRSDFGP--------DFII 146 (256)
T ss_pred CCCCC--CCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCCC---HhHHHHHHHHHHHHhCC--------CcEE
Confidence 99863 34888788999999999999999999999999999999753 56999999999998852 4789
Q ss_pred EEeeccccccccccccCCcChhhhh----hcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCC
Q 040415 183 TAAVYFSVDFFVADVYRKYPVGSIN----RNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHR 258 (379)
Q Consensus 183 s~a~~~~~~~~~~~~~~~~~~~~l~----~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~ 258 (379)
|+++++............+++.++. +++|++++|.||.++... . ......|+..++|+
T Consensus 147 T~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------~----------~~~~~~~~~~~~~~ 208 (256)
T cd06546 147 TLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------S----------PSDYDAIVAQGWDP 208 (256)
T ss_pred EECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------C----------HHHHHHHHHcCCCc
Confidence 9887653211000023456777665 599999999998764321 0 11234566678999
Q ss_pred CCeeeeccc
Q 040415 259 SKLVMGLPL 267 (379)
Q Consensus 259 ~Kl~lglp~ 267 (379)
+||++|+|.
T Consensus 209 ~Kv~iGlpa 217 (256)
T cd06546 209 ERIVIGLLT 217 (256)
T ss_pred ccEEEEEec
Confidence 999999986
No 18
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-32 Score=237.44 Aligned_cols=297 Identities=18% Similarity=0.221 Sum_probs=231.0
Q ss_pred CeEEEEecCC-CCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCc
Q 040415 32 PVKAAYWPSW-AESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTS 110 (379)
Q Consensus 32 ~~~~gy~~~w-~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~ 110 (379)
..+.||.++| +.+|+.+.+-.+++|||.+.|+.+...|..+.+....+- -..+++++|+++++++++.-+--....+.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdi-d~gwiralRk~~~~l~ivPR~~fd~~~~~ 157 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDI-DPGWIRALRKSGKDLHIVPRFYFDEFTSA 157 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeecccC-ChHHHHHHHHhCCCceeeceehhhhccch
Confidence 4479999999 889999999999999999999999976644444433222 25578899999999999876543334477
Q ss_pred chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEee-cCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc
Q 040415 111 IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDW-EFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFS 189 (379)
Q Consensus 111 ~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~-E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~ 189 (379)
.+..++.+++.|++..+.++++++++||||+.++. ....+--+......|++.|-++++.. .+++.+++|+.
T Consensus 158 d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq-------~l~~iLvvPp~ 230 (392)
T KOG2091|consen 158 DLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQ-------ELQAILVVPPV 230 (392)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------heEEEEEeCCC
Confidence 88999999999999999999999999999999994 22111112244567788888888863 36677777763
Q ss_pred ccc--ccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccc
Q 040415 190 VDF--FVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPL 267 (379)
Q Consensus 190 ~~~--~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~ 267 (379)
... ........-+...|.+.+|.+.+||||+.+. ..|++.+|+. |++..++.+.-..--+.||++|+.|
T Consensus 231 ~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~---~~pg~nap~~------wi~~~l~~l~~~s~~r~KiLlGlNF 301 (392)
T KOG2091|consen 231 IEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV---QGPGPNAPLE------WIRHCLHHLGGSSAKRPKILLGLNF 301 (392)
T ss_pred CcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc---cCCCCCCCHH------HHHHHHHHhCCccccccceeEeeec
Confidence 222 1000122234567888899999999999875 5799999997 8998888886544556899999999
Q ss_pred cccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeE-EEEe----CCEEEEECCHHHHHHH
Q 040415 268 YGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSA-YSFA----GSTWIGYDDEISATIK 342 (379)
Q Consensus 268 yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~-y~~~----~~~~i~y~d~~Sl~~K 342 (379)
||.+|.+.+ ..+.++-.+..++++.......||+++... +.|+ +++.|.|++..|+..|
T Consensus 302 YG~d~~~gd----------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~R 365 (392)
T KOG2091|consen 302 YGNDFNLGD----------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELR 365 (392)
T ss_pred cccccccCC----------------CCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHHHH
Confidence 999997522 146788889999999999999999999444 5563 3679999999999999
Q ss_pred HHHHHHcCCceEEEeeccCC
Q 040415 343 IGFAQALGLRGYFFWALSYD 362 (379)
Q Consensus 343 ~~~~~~~gl~Gv~iW~l~~D 362 (379)
+++|++.| .||+||++||-
T Consensus 366 i~lA~~~g-vgISIWe~GqG 384 (392)
T KOG2091|consen 366 IELARELG-VGISIWEYGQG 384 (392)
T ss_pred HHHHHHhC-CceEeeeccCc
Confidence 99999999 69999999987
No 19
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=1.6e-31 Score=239.13 Aligned_cols=202 Identities=15% Similarity=0.134 Sum_probs=139.7
Q ss_pred CCCCCCCCCCC--CcEEEEEEEe-eeCC----CcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCC-cchhhh
Q 040415 44 SFPPSAINTNL--FTHIYYAFLM-PNNV----TYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADT-SIFVDM 115 (379)
Q Consensus 44 ~~~~~~~~~~~--~t~ii~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~-~~~~~~ 115 (379)
...+.++|... |||||++|+. .+.. ++........+....+.+..+|+++|++|||+|||||+... ..+...
T Consensus 12 ~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~ 91 (253)
T cd06544 12 GVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDP 91 (253)
T ss_pred CccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCc
Confidence 44688898888 9999999993 3221 22333222222222334559999999999999999997632 122223
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccc
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVA 195 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~ 195 (379)
.+....|++|+++++++|++|||||||||||+|. .++.+|..|+++||++|++. + .|++++.++....
T Consensus 92 ~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~-------~-~lt~a~vap~~~~-- 159 (253)
T cd06544 92 SNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNN-------G-VIKVASIAPSEDA-- 159 (253)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhc-------C-CeEEEEecCCccc--
Confidence 3344556777999999999999999999999985 57899999999999999862 2 3444433332220
Q ss_pred cccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccccccce
Q 040415 196 DVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSW 272 (379)
Q Consensus 196 ~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~ 272 (379)
. ..++...+.+++|+|++|+||+++.+. +.++- ......+.|. .++|++||++|+|++++.|
T Consensus 160 -~-~~~y~~~~~~~~d~id~~~~qfy~~~~-----~~~~~-------~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 160 -E-QSHYLALYNAYGDYIDYVNYQFYNYGV-----PTTVA-------KYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred -c-ccccHHHHHHhhCceeEEEhhhhCCCC-----CCCHH-------HHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 1 245578889999999999999987543 11110 1223344454 4699999999999999766
No 20
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=4.3e-30 Score=239.00 Aligned_cols=215 Identities=21% Similarity=0.349 Sum_probs=144.7
Q ss_pred CeEEEEecCCCC-----CCCCCCCCCCCCcEEEEEEEeeeCCCc-EEEe------CCcchHHHHHHHHHHhhcCCCCeEE
Q 040415 32 PVKAAYWPSWAE-----SFPPSAINTNLFTHIYYAFLMPNNVTY-KFNI------DNSTAIQLSNFTTTLHHKNPPVKTL 99 (379)
Q Consensus 32 ~~~~gy~~~w~~-----~~~~~~~~~~~~t~ii~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~lk~~~~~~kvl 99 (379)
.+++|||+.|.. .+++..+ .+.||||+++|+.++..+. .+.+ .......+.+.++.+|+ +++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~--~G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQA--KGKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHH--CCCEEE
Confidence 367999999911 1134444 4899999999999987542 2221 11223445555656666 479999
Q ss_pred EEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCC----cccchHHHHHHHHHHHHHHHHHhc
Q 040415 100 FSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP----KEMHDLGLLLDEWRLALEREAKAT 175 (379)
Q Consensus 100 lsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~----~~~~~~~~fl~~l~~~l~~~~~~~ 175 (379)
+||||+.. + ..+.+++.|++|++++++++++|+|||||||||++... +++.+|..||++||+.++.
T Consensus 78 lSiGG~~~-~----~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~----- 147 (312)
T cd02871 78 ISIGGANG-H----VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP----- 147 (312)
T ss_pred EEEeCCCC-c----cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 99999864 2 13678899999999999999999999999999998642 3678999999999998853
Q ss_pred CCCCeEEEEeeccccccc---ccc-ccCCc--ChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHH
Q 040415 176 CQPPLLFTAAVYFSVDFF---VAD-VYRKY--PVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLK 249 (379)
Q Consensus 176 ~~~~~~ls~a~~~~~~~~---~~~-~~~~~--~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~ 249 (379)
+++||+|+.++.... ..+ ....| ...++.+++|++++|+||.++.+. +. +.............+.
T Consensus 148 ---~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~-----~~-~~~~~~~~~~~~~~~~ 218 (312)
T cd02871 148 ---NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG-----CD-GQSYSQGTADFLVALA 218 (312)
T ss_pred ---CeEEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc-----cc-ccCCccchhHHHHHHH
Confidence 589999975532210 000 01123 256788899999999999875421 10 0000001112223333
Q ss_pred HHHHcC-----------CCCCCeeeecccc
Q 040415 250 SWLRAG-----------VHRSKLVMGLPLY 268 (379)
Q Consensus 250 ~~~~~g-----------v~~~Kl~lglp~y 268 (379)
.++..+ +|++||++|+|+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 219 DMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 344444 8999999999984
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.94 E-value=1.3e-25 Score=203.95 Aligned_cols=242 Identities=16% Similarity=0.127 Sum_probs=171.7
Q ss_pred CeEEEEecCCC-----CCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCC
Q 040415 32 PVKAAYWPSWA-----ESFPPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAG 106 (379)
Q Consensus 32 ~~~~gy~~~w~-----~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~ 106 (379)
++.+|||..|. ....+.++| ..+++|+++...++.++ ... .........+.+..+|+ +|+||+++|||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~-~~~-~~~~~~~~~~~i~~l~~--kG~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDA-ATA-VQFLLTNKETYIRPLQA--KGTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCccc-ccc-hhhhhHHHHHHHHHHhh--CCCEEEEEECCCC
Confidence 35789999992 225666776 88999998655444332 100 01112333445555555 5899999999987
Q ss_pred CCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC------CcccchHHHHHHHHHHHHHHHHHhcCCCCe
Q 040415 107 ADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN------PKEMHDLGLLLDEWRLALEREAKATCQPPL 180 (379)
Q Consensus 107 ~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~------~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~ 180 (379)
. ...| ....+++.|++|++++++++++|||||||||||++.. +.+..+|..|+++||+.|+. .++
T Consensus 76 ~-~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~-------~~k 146 (255)
T cd06542 76 L-GAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGP-------TDK 146 (255)
T ss_pred C-CCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCc-------CCc
Confidence 5 4444 3456788999999999999999999999999998864 23678999999999999963 257
Q ss_pred EEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCC
Q 040415 181 LFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSK 260 (379)
Q Consensus 181 ~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~K 260 (379)
+|++++++.... . +.+++.+++||+++|+|+.++... .. . ......|+|++|
T Consensus 147 llt~~~~~~~~~-----~---~~~~~~~~vDyv~~~~y~~~~~~~----~~---~-------------~~~~~~g~~~~k 198 (255)
T cd06542 147 LLTIDGYGQALS-----N---DGEEVSPYVDYVIYQYYGSSSSST----QR---N-------------WNTNSPKIPPEK 198 (255)
T ss_pred EEEEEecCCchh-----c---CHHHHHHhCCEEEeeccCCCCccC----Cc---c-------------cccccCCCCHHH
Confidence 899988754443 1 678999999999999998543211 00 0 111246899999
Q ss_pred eeeeccccccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCCEEEEECCHHHHH
Q 040415 261 LVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGSTWIGYDDEISAT 340 (379)
Q Consensus 261 l~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~Sl~ 340 (379)
+++|+++++.... .+..++.
T Consensus 199 ~i~~~~~~~~~~~------------------------------------------------------------~~~~~~~ 218 (255)
T cd06542 199 MVYTESFEEENGG------------------------------------------------------------NSGSSAE 218 (255)
T ss_pred ceeeeeeecccCC------------------------------------------------------------CcchhHH
Confidence 9999999863210 1334455
Q ss_pred HHHHHHHHc-CCceEEEeeccCCCcccHHHHHHHhc
Q 040415 341 IKIGFAQAL-GLRGYFFWALSYDNEWKISTQVARAW 375 (379)
Q Consensus 341 ~K~~~~~~~-gl~Gv~iW~l~~Dd~~~l~~a~~~~~ 375 (379)
..++++.+. +.||+|+|+++.|...+.++++.+.+
T Consensus 219 ~~A~~~~~~~~~gG~~~y~~~~dy~~~~~~~~~~~~ 254 (255)
T cd06542 219 QYARWTPAKGGKGGIGTYALDRDYYRPYDSAVSKAL 254 (255)
T ss_pred HHHhcCcccCceEEEEEEecCCCccccchhhhhhhh
Confidence 566666666 89999999999997677777777654
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.92 E-value=3.1e-23 Score=188.27 Aligned_cols=203 Identities=18% Similarity=0.239 Sum_probs=132.9
Q ss_pred EEEEecCCCCCCCCCCC-CCCCCcEEEEEEEeeeCCCcE--EEeCCc-ch---HHHHHHHHHHhh-cCCCCeEEEEEcCC
Q 040415 34 KAAYWPSWAESFPPSAI-NTNLFTHIYYAFLMPNNVTYK--FNIDNS-TA---IQLSNFTTTLHH-KNPPVKTLFSIGGA 105 (379)
Q Consensus 34 ~~gy~~~w~~~~~~~~~-~~~~~t~ii~~~~~~~~~~~~--~~~~~~-~~---~~~~~~~~~lk~-~~~~~kvllsigg~ 105 (379)
++.||-.-...-.+... +...++.|+++|+...+.++. +.+... .. ..+.++.+.+|. +.+++||||||||+
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIGG~ 82 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIGGA 82 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEccCC
Confidence 57788652212222222 335799999999988765322 222221 11 023344444444 44799999999999
Q ss_pred CCCCcchhhhhCCHHHHHHHHHHHHHHHH------------hcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHH
Q 040415 106 GADTSIFVDMASHPRSRQAFIHSSIEVAR------------KFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAK 173 (379)
Q Consensus 106 ~~~~~~~~~~~~~~~~r~~f~~~i~~~l~------------~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~ 173 (379)
.. +..+ .+++.|++|+++|.++.. +++|||||||||++.. .+|..|+++||+.++...
T Consensus 83 ~~-~~~~----~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~- 152 (280)
T cd02877 83 GG-SYSL----SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDP- 152 (280)
T ss_pred CC-CcCC----CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhccc-
Confidence 75 3333 688999999999988752 5679999999998764 789999999999997531
Q ss_pred hcCCCCeEEEEeeccccccccccccCCcChhhhh-hcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHH
Q 040415 174 ATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSIN-RNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWL 252 (379)
Q Consensus 174 ~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~-~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~ 252 (379)
.+.++||+|++++... .+....+. .++|++++|+||..+- . ...+.. .......+.|.
T Consensus 153 ---~~~~~LTaAPq~~~~d-------~~~~~~i~~~~~D~i~vqfYn~~~c-~-~~~~~~---------~~~~~~~~~w~ 211 (280)
T cd02877 153 ---SKKYYLTAAPQCPYPD-------ASLGDAIATGLFDFIFVQFYNNPCC-S-YASGNA---------SGFNFNWDTWT 211 (280)
T ss_pred ---CCceEEEeccccCCcc-------hhHHHHHccCccCEEEEEEecCccc-c-cccccc---------chhhhHHHHHH
Confidence 1358999997764322 23334555 4899999999996431 1 000001 12345667777
Q ss_pred HcCCCC---CCeeeecccc
Q 040415 253 RAGVHR---SKLVMGLPLY 268 (379)
Q Consensus 253 ~~gv~~---~Kl~lglp~y 268 (379)
.. ++. .||+||||..
T Consensus 212 ~~-~~~~~~~kv~lGlpas 229 (280)
T cd02877 212 SW-AKATSNAKVFLGLPAS 229 (280)
T ss_pred Hh-cccCCCceEEEecccC
Confidence 65 665 8999999985
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.85 E-value=5.1e-20 Score=168.43 Aligned_cols=151 Identities=19% Similarity=0.154 Sum_probs=112.3
Q ss_pred CCCCcEEEEEEEeeeCCCcEEEeCCc---c-hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHH
Q 040415 52 TNLFTHIYYAFLMPNNVTYKFNIDNS---T-AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIH 127 (379)
Q Consensus 52 ~~~~t~ii~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~ 127 (379)
...|+||+++|+.....+ +...... . ...+.+.+..+|++ ++||++||||+.. . . +..+...|++|++
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g-~-~---~~~~~~~~~~~~~ 94 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG-T-P---LATSCTSADQLAA 94 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC-C-c---cccCcccHHHHHH
Confidence 368999999999887433 5544332 1 23345556678775 5899999999975 2 2 3337789999999
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCccc---chHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChh
Q 040415 128 SSIEVARKFGFDGLDLDWEFPQNPKEM---HDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVG 204 (379)
Q Consensus 128 ~i~~~l~~~g~DGidiD~E~~~~~~~~---~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~ 204 (379)
++.+++++|+|||||||||++.. .++ .++.+.|++|++++ +++.|++++|..+... ...++++.
T Consensus 95 a~~~~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~---------p~l~vs~Tlp~~p~gl---~~~g~~~l 161 (294)
T cd06543 95 AYQKVIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEY---------PDLKISFTLPVLPTGL---TPDGLNVL 161 (294)
T ss_pred HHHHHHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHC---------CCcEEEEecCCCCCCC---ChhHHHHH
Confidence 99999999999999999999874 454 67777788777765 3588999888755431 12445667
Q ss_pred hhhh----cCcEEEeecccccCC
Q 040415 205 SINR----NLDWINAMCFDYHGG 223 (379)
Q Consensus 205 ~l~~----~vD~v~lm~Yd~~~~ 223 (379)
+.+. .+|+||+|+|||++.
T Consensus 162 ~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 162 EAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HHHHHcCCCcceeeeeeecCCCC
Confidence 7777 899999999999864
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.7e-17 Score=141.78 Aligned_cols=219 Identities=19% Similarity=0.298 Sum_probs=129.3
Q ss_pred ccCCCCCeEEEEecCC-CCC------CCCCCCC----CCCCcEEEEEEEeeeCCCcEEEeCCc---chHHHHHHHHHHhh
Q 040415 26 ITASPPPVKAAYWPSW-AES------FPPSAIN----TNLFTHIYYAFLMPNNVTYKFNIDNS---TAIQLSNFTTTLHH 91 (379)
Q Consensus 26 ~~~~~~~~~~gy~~~w-~~~------~~~~~~~----~~~~t~ii~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~ 91 (379)
....+..+.+|||.+| +.. -+..++. ...++.+-.+|+.-. + ++....+ .+..|+.-+..|.+
T Consensus 20 m~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~--g-~iptf~P~~~~daeFr~~v~aLna 96 (332)
T COG3469 20 MPDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGA--G-DIPTFKPYNDPDAEFRAQVGALNA 96 (332)
T ss_pred ccccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecC--C-CCcccCcCCCCHHHHHHHHHHhhc
Confidence 3345556889999999 221 1222222 134555555554322 2 2221111 23444444444444
Q ss_pred cCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC--CcccchHHHHHHHHHHHHH
Q 040415 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN--PKEMHDLGLLLDEWRLALE 169 (379)
Q Consensus 92 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~--~~~~~~~~~fl~~l~~~l~ 169 (379)
.+.-|+||+||... .. --....-+.|+++|+.++++|||||+|||.|.... .+.+....+.+|.+|+..+
T Consensus 97 --eGkavllsLGGAdg---hI---eL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk 168 (332)
T COG3469 97 --EGKAVLLSLGGADG---HI---ELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYK 168 (332)
T ss_pred --cCcEEEEEccCccc---eE---EeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHH
Confidence 46678899999753 11 12334477899999999999999999999996542 2334467788888888777
Q ss_pred HHHHhcCCCCeEEEEeeccccccccccccCCc--ChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHH
Q 040415 170 REAKATCQPPLLFTAAVYFSVDFFVADVYRKY--PVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYG 247 (379)
Q Consensus 170 ~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~--~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~ 247 (379)
..|+ ++.||+++.++.-. ....| .+.++.++.|+|..+-|+..|.-. ..+...++.. ++..-+.+.
T Consensus 169 ~~Gk-----~f~itMAPEfPYl~----~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~-w~~~~nawi~--q~nd~~kes 236 (332)
T COG3469 169 NQGK-----NFFITMAPEFPYLQ----GWGAYIPYINELRDYYDFIAPQLYNQGGDGN-WVTESNAWIA--QNNDMVKES 236 (332)
T ss_pred hcCC-----ceEEEecCCCceec----CCcccchHHHHHhhHHhhhhHHHhcCCCCCC-CcCccccccc--cccHHHHHh
Confidence 6553 58999997665443 11122 245888999999999998765411 1122222221 011112222
Q ss_pred HHHHHH----------cCCCCCCeeeeccc
Q 040415 248 LKSWLR----------AGVHRSKLVMGLPL 267 (379)
Q Consensus 248 v~~~~~----------~gv~~~Kl~lglp~ 267 (379)
.-+++. ..+|.+|+++|||.
T Consensus 237 fly~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 237 FLYYLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HHHHhhhhhhcCcccceecccceeEEecCC
Confidence 222221 24899999999997
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.58 E-value=1.5e-13 Score=124.00 Aligned_cols=209 Identities=17% Similarity=0.242 Sum_probs=129.7
Q ss_pred cccCCCCCeEEEEecCC--CCCC-CCCCCCCCCCcEEEEEEEeeeCCCcEEEeC--C----cch---HHHHHHHHHHhh-
Q 040415 25 HITASPPPVKAAYWPSW--AESF-PPSAINTNLFTHIYYAFLMPNNVTYKFNID--N----STA---IQLSNFTTTLHH- 91 (379)
Q Consensus 25 ~~~~~~~~~~~gy~~~w--~~~~-~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~--~----~~~---~~~~~~~~~lk~- 91 (379)
.......-.+++||..- +.+- ...-.....++.++++|+.-.+.++...+. + ... ..+.++...++.
T Consensus 20 k~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~C 99 (568)
T KOG4701|consen 20 KLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVC 99 (568)
T ss_pred ccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHH
Confidence 33444456679999763 1111 122223467899999998766655454432 1 111 112334444444
Q ss_pred cCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcC----------CCEEEEeecCCCCCcccchHHHHH
Q 040415 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG----------FDGLDLDWEFPQNPKEMHDLGLLL 161 (379)
Q Consensus 92 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g----------~DGidiD~E~~~~~~~~~~~~~fl 161 (379)
+..|+||||++||...+ ..+.+.+..+.|++.+.+..-.-. +||+|+|.|. .....|-.|-
T Consensus 100 QS~GiKVlLSLGG~~Gn-----Ys~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~----g~~~~ysaLA 170 (568)
T KOG4701|consen 100 QSNGIKVLLSLGGYNGN-----YSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK----GTNTAYSALA 170 (568)
T ss_pred HhcCeEEEEeccCcccc-----eeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec----CCcchHHHHH
Confidence 34699999999998653 336688899999999998765421 7999999994 3457899999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhh-hhcCcEEEeecccccCCCCCCCCCCCcccCCCCC
Q 040415 162 DEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI-NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKS 240 (379)
Q Consensus 162 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l-~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~ 240 (379)
+.||..|...+ +++.|+.|+.++.... ..+ ..| .+-+||+.+++|+-. +...+. +
T Consensus 171 ~~L~~~Fa~~~-----r~yYLsaAPQCP~PD~----~~G---~aL~~~~fDf~~IQFYNN~-------~CS~Ss----G- 226 (568)
T KOG4701|consen 171 KRLLEIFASDP-----RRYYLSAAPQCPVPDH----TLG---KALSENSFDFLSIQFYNNS-------TCSGSS----G- 226 (568)
T ss_pred HHHHHHHccCC-----ceEEeccCCCCCCCch----hhh---hhhhccccceEEEEeecCC-------Cccccc----C-
Confidence 99999997633 3588999988765431 111 112 345899999999631 111110 0
Q ss_pred CccHHHHHHHHHH--cCCCCCC---eeeecccc
Q 040415 241 NLSTSYGLKSWLR--AGVHRSK---LVMGLPLY 268 (379)
Q Consensus 241 ~~~i~~~v~~~~~--~gv~~~K---l~lglp~y 268 (379)
+.+...+.|++ ..+.++| +.||||.-
T Consensus 227 --~~Q~~fDsW~~ya~~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 227 --SRQSTFDAWVEYAEDSAYNKNTSLFLGLPGH 257 (568)
T ss_pred --cccccHHHHHHHHhhhcccccceEEeeccCC
Confidence 11222334432 3366776 99999874
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.50 E-value=1.7e-06 Score=81.09 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=105.1
Q ss_pred HHHHHHHhhcCCCCeEEEEEcC-CCCCCcchhhhhCC-HHHHHHHHHHHHHHHHhcCCCEEEEeecCCC-CCcccchHHH
Q 040415 83 SNFTTTLHHKNPPVKTLFSIGG-AGADTSIFVDMASH-PRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ-NPKEMHDLGL 159 (379)
Q Consensus 83 ~~~~~~lk~~~~~~kvllsigg-~~~~~~~~~~~~~~-~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~-~~~~~~~~~~ 159 (379)
...++.+|+ .||||+-.|-- +....+....++.+ ++.+.++|+.|+++++.|||||+.||+|... .+++.+.+..
T Consensus 49 ~~~idaAHk--nGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~ 126 (339)
T cd06547 49 ADWINAAHR--NGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIA 126 (339)
T ss_pred cHHHHHHHh--cCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHH
Confidence 345666666 58999977631 21224567888888 9999999999999999999999999999877 5678999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEE-Eeec-ccccc-ccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccC
Q 040415 160 LLDEWRLALEREAKATCQPPLLFT-AAVY-FSVDF-FVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALY 236 (379)
Q Consensus 160 fl~~l~~~l~~~~~~~~~~~~~ls-~a~~-~~~~~-~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~ 236 (379)
|+++|++++++.. ++..+. ...- ..... |. ......+. ..-+.+|-+.+ +|. |. .
T Consensus 127 F~~~L~~~~~~~~-----~~~~v~WYDs~t~~G~l~wQ-n~Ln~~N~-~ff~~~D~~Fl---NY~--W~-~--------- 184 (339)
T cd06547 127 FLRYLKAKLHENV-----PGSLVIWYDSMTEDGKLSWQ-NELNSKNK-PFFDVCDGIFL---NYW--WT-E--------- 184 (339)
T ss_pred HHHHHHHHHhhcC-----CCcEEEEEecCCCCCccchh-hhhhHHHH-HHHhhhcceeE---ecC--CC-c---------
Confidence 9999999998631 222221 1111 11111 00 00001111 12245664333 222 33 1
Q ss_pred CCCCCccHHHHHHHHHHcCCCCCCeeeecccccccee
Q 040415 237 DPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWK 273 (379)
Q Consensus 237 ~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~~ 273 (379)
...+.+++.....|..+.+|.+|+=..|+...
T Consensus 185 -----~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 -----ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred -----chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 02466667777788999999999999987754
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.98 E-value=7.4e-05 Score=69.58 Aligned_cols=132 Identities=18% Similarity=0.244 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEe-ecCCCC-----------------------Ccc-------cchHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLD-WEFPQN-----------------------PKE-------MHDLGLLLDEWR 165 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD-~E~~~~-----------------------~~~-------~~~~~~fl~~l~ 165 (379)
..|+.|+-+++-+.+++++|.+|||+|| +-+|.. +.| +++...|+++++
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4578888899999999999999999999 445321 233 467889999999
Q ss_pred HHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhh--hhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCcc
Q 040415 166 LALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI--NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLS 243 (379)
Q Consensus 166 ~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l--~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~ 243 (379)
+++++. ++.+.+++++.+..... -....-|...- ..++|++..|.|-.. .....+ .
T Consensus 214 ~~ik~~-----kP~v~~sisp~g~~~~~--y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~------~~~~~~---------~ 271 (311)
T PF02638_consen 214 DAIKAI-----KPWVKFSISPFGIWNSA--YDDYYQDWRNWLKEGYIDYIVPQIYWSD------FSHFTA---------P 271 (311)
T ss_pred HHHHHh-----CCCCeEEEEeecchhhh--hhheeccHHHHHhcCCccEEEeeecccc------cchhHH---------H
Confidence 999875 35678888765332110 00112233322 378999999999431 111111 2
Q ss_pred HHHHHHHHHHcCCCC-CCeeeecccccc
Q 040415 244 TSYGLKSWLRAGVHR-SKLVMGLPLYGR 270 (379)
Q Consensus 244 i~~~v~~~~~~gv~~-~Kl~lglp~yG~ 270 (379)
++..+..|.+.-.+. -+|.+|+.+|-.
T Consensus 272 ~~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 272 YEQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 567777887654443 499999998854
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.79 E-value=6.7e-05 Score=69.67 Aligned_cols=175 Identities=18% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEc-CCCCCCcchhhhhC-CHHHHHHHHHHHH
Q 040415 53 NLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIG-GAGADTSIFVDMAS-HPRSRQAFIHSSI 130 (379)
Q Consensus 53 ~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsig-g~~~~~~~~~~~~~-~~~~r~~f~~~i~ 130 (379)
+.++..+|.. .+.+.+|+ ..+++.+|+ +|||||-.|- .++........++. +++....+++.|+
T Consensus 27 ~yiD~fvyws------h~~i~iP~------~~widaAHr--nGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi 92 (311)
T PF03644_consen 27 QYIDIFVYWS------HGLITIPP------AGWIDAAHR--NGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLI 92 (311)
T ss_dssp GG-SEEEET-------TBSSE---------HHHHHHHHH--TT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHH
T ss_pred cceeeEeecc------cccccCCC------chhHHHHHh--cCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHH
Confidence 4555555532 22555554 456777776 5899985541 22222456778888 8888899999999
Q ss_pred HHHHhcCCCEEEEeecCCCCC-cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEE--eecccccc-ccccccCCcCh--h
Q 040415 131 EVARKFGFDGLDLDWEFPQNP-KEMHDLGLLLDEWRLALEREAKATCQPPLLFTA--AVYFSVDF-FVADVYRKYPV--G 204 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E~~~~~-~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~--a~~~~~~~-~~~~~~~~~~~--~ 204 (379)
++++-|||||.-|++|.+... .+...+..|+++|++.+++ . ++..+.- ++...... | ...++- .
T Consensus 93 ~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~~~l~~~~~~-~-----~~~~v~WYDs~t~~G~l~~----qn~Ln~~N~ 162 (311)
T PF03644_consen 93 EIAKYYGFDGWLINIETPLSGPEDAENLIDFLKYLRKEAHE-N-----PGSEVIWYDSVTNSGRLSW----QNELNDKNK 162 (311)
T ss_dssp HHHHHHT--EEEEEEEESSTTGGGHHHHHHHHHHHHHHHHH-T------T-EEEEES-B-SSSSB-------SSS-TTTG
T ss_pred HHHHHcCCCceEEEecccCCchhHHHHHHHHHHHHHHHhhc-C-----CCcEEEEeecCCcCCccch----HHHHHhhCc
Confidence 999999999999999987654 5789999999999999986 2 2222221 11111111 0 001110 1
Q ss_pred hhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccccccc
Q 040415 205 SINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRS 271 (379)
Q Consensus 205 ~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~ 271 (379)
...+.+|-+.+ +|. |+ ...++.+++...+.+.++.+|.+|+=..||.
T Consensus 163 ~f~~~~d~iFl---NY~--W~---------------~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 163 PFFDVCDGIFL---NYN--WN---------------PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp GGBES-SEEEE----S----S---------------HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred chhhhcceeeE---ecC--CC---------------cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 12344554433 222 32 0136778888888999999999999999998
No 29
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.71 E-value=0.0023 Score=59.23 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEee-cCCCC----------Cc----ccchHHHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 040415 120 RSRQAFIHSSIEVARKFGFDGLDLDW-EFPQN----------PK----EMHDLGLLLDEWRLALEREAKATCQPPLLFTA 184 (379)
Q Consensus 120 ~~r~~f~~~i~~~l~~~g~DGidiD~-E~~~~----------~~----~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~ 184 (379)
+.++-.+ .|+..+.+.|||.|.||+ .+|.. .. -.+....||+..|+.++.. +..+|+
T Consensus 121 evw~Y~i-~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~-------~v~vSa 192 (316)
T PF13200_consen 121 EVWDYNI-DIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPY-------GVPVSA 192 (316)
T ss_pred HHHHHHH-HHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHc-------CCCEEE
Confidence 4444444 477778888999999998 56651 11 1256899999999999863 578999
Q ss_pred eeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCccc
Q 040415 185 AVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAAL 235 (379)
Q Consensus 185 a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl 235 (379)
.+.+..........-+-+++.++++||+|.-|.|--| |.++..+...|-
T Consensus 193 DVfG~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh--~~~g~~g~~~P~ 241 (316)
T PF13200_consen 193 DVFGYVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH--YGPGFFGIDKPD 241 (316)
T ss_pred EecccccccCCCCCcCCCHHHHhhhCCEEEecccccc--cCcccCCCCCcc
Confidence 9876443321223557789999999999999999544 443344444443
No 30
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.62 E-value=0.00074 Score=56.57 Aligned_cols=116 Identities=13% Similarity=0.196 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHHHHHh-cCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccccccc
Q 040415 118 HPRSRQAFIHSSIEVARK-FGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVAD 196 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~-~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~ 196 (379)
+++..++..+.+.++-.. +...||.||+.-.. .....|..|+++||..|.. ++.||++.-+ +..
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~--------~~~LSIT~L~--dW~--- 86 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPP--------DYRLSITALP--DWL--- 86 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCC--------CceEeeEEeh--hhh---
Confidence 456666666776666644 36899999998654 4678999999999999964 4677776422 210
Q ss_pred ccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeeccccc
Q 040415 197 VYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYG 269 (379)
Q Consensus 197 ~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG 269 (379)
...-.+..+...||.+++|+| .|..+ .+ ....-+..+.+ +. --.-+|+|.||
T Consensus 87 -~~~~~L~~L~~~VDE~VlQ~y--qGl~d-------~~--------~~~~yl~~l~~--l~-~PFriaLp~yG 138 (181)
T PF11340_consen 87 -SSPDWLNALPGVVDELVLQVY--QGLFD-------PP--------NYARYLPRLAR--LT-LPFRIALPQYG 138 (181)
T ss_pred -cCchhhhhHhhcCCeeEEEee--cCCCC-------HH--------HHHHHHHHHhc--CC-CCeEEecCcCC
Confidence 111136788888999999999 22222 11 12222333333 33 55778999999
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=95.34 E-value=0.3 Score=46.29 Aligned_cols=82 Identities=22% Similarity=0.255 Sum_probs=68.0
Q ss_pred HHHhhcCCCCeEEEE-EcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHH
Q 040415 87 TTLHHKNPPVKTLFS-IGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWR 165 (379)
Q Consensus 87 ~~lk~~~~~~kvlls-igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~ 165 (379)
+.+|+ .|++|+-+ |..|......-..++.++++.+..++.++.+.+-.||||=-|+.|..-+.....++..|+..|.
T Consensus 118 n~AHr--HGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt 195 (526)
T KOG2331|consen 118 NTAHR--HGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLT 195 (526)
T ss_pred chhhh--cCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHH
Confidence 34454 58999865 4556543566788999999999999999999999999999999997665566789999999999
Q ss_pred HHHHH
Q 040415 166 LALER 170 (379)
Q Consensus 166 ~~l~~ 170 (379)
+.+++
T Consensus 196 ~~~~~ 200 (526)
T KOG2331|consen 196 KVLHS 200 (526)
T ss_pred HHHhh
Confidence 99986
No 32
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=90.64 E-value=0.62 Score=42.18 Aligned_cols=88 Identities=24% Similarity=0.353 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEee-cCCCCC---------------cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeec
Q 040415 124 AFIHSSIEVARKFGFDGLDLDW-EFPQNP---------------KEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVY 187 (379)
Q Consensus 124 ~f~~~i~~~l~~~g~DGidiD~-E~~~~~---------------~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~ 187 (379)
+.-=+|++.+.+.|||-|.+|+ .+|.+. ...+.+.+||.--|+.+. .-+|+.+.
T Consensus 196 eYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DIY 265 (400)
T COG1306 196 EYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADIY 265 (400)
T ss_pred hhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEee
Confidence 3444678889999999999998 566531 112456677776677764 45777776
Q ss_pred cccccccccccCCcChhhhhhcCcEEEeeccccc
Q 040415 188 FSVDFFVADVYRKYPVGSINRNLDWINAMCFDYH 221 (379)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~ 221 (379)
.......-+...+-+++.++++||.|.-|+|--|
T Consensus 266 G~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 266 GQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred cccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 5333211112345678899999999999999655
No 33
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=88.57 E-value=3.9 Score=38.13 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=51.2
Q ss_pred HHHHhhcCCCCeEE--EEEcCCCCCCcchhh-----------------------hhCCHHHHHHHHHHHHHHHHhcCCCE
Q 040415 86 TTTLHHKNPPVKTL--FSIGGAGADTSIFVD-----------------------MASHPRSRQAFIHSSIEVARKFGFDG 140 (379)
Q Consensus 86 ~~~lk~~~~~~kvl--lsigg~~~~~~~~~~-----------------------~~~~~~~r~~f~~~i~~~l~~~g~DG 140 (379)
+..+|. +|.+++ +|||..+.....|.. =..+++.|+-+.+. ++-+.+.||||
T Consensus 87 i~~Lk~--~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGfDG 163 (315)
T TIGR01370 87 IVRAAA--AGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGFDG 163 (315)
T ss_pred HHHHHh--CCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCCCe
Confidence 445665 467777 799986542222211 02245677766666 56677789999
Q ss_pred EEEee----cCCCC-----CcccchHHHHHHHHHHHHHHH
Q 040415 141 LDLDW----EFPQN-----PKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 141 idiD~----E~~~~-----~~~~~~~~~fl~~l~~~l~~~ 171 (379)
+.+|. ++... +...+....|+++|.+..++.
T Consensus 164 vfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 164 VYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred EeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 99994 22111 223356788999998777763
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.41 E-value=4.5 Score=37.20 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCc------
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPK------ 152 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~------ 152 (379)
...+.+.+...+...++..++++|+|.. ++ .++ .+++.+.+.|+|+|+|++--|....
T Consensus 82 ~~~~~~~i~~~~~~~~~~pvi~si~g~~------------~~---~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~ 145 (289)
T cd02810 82 LDVWLQDIAKAKKEFPGQPLIASVGGSS------------KE---DYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQ 145 (289)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeccCC------------HH---HHH-HHHHHHHHhCCCEEEEEcCCCCCCCCccccc
Confidence 3444444444443335778999998852 11 222 2455666779999999997665321
Q ss_pred ccchHHHHHHHHHHHH
Q 040415 153 EMHDLGLLLDEWRLAL 168 (379)
Q Consensus 153 ~~~~~~~fl~~l~~~l 168 (379)
+.....++++++|+..
T Consensus 146 ~~~~~~eiv~~vr~~~ 161 (289)
T cd02810 146 DPEAVANLLKAVKAAV 161 (289)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 2223445555555443
No 35
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=88.29 E-value=1.3 Score=44.54 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=38.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeec--------CCCCCc--ccchHHHHHHHHHHHHH
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWE--------FPQNPK--EMHDLGLLLDEWRLALE 169 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E--------~~~~~~--~~~~~~~fl~~l~~~l~ 169 (379)
..|+..|+-+++++.+.++..||||++||=- +.+.+- -...|..||+++++++.
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~ 300 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALP 300 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999999999932 222222 14679999999999983
No 36
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=88.16 E-value=2.9 Score=42.26 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=59.6
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE-cCCCCC-Cc-------chh----------hhhCCH---HHHHHHHHHHHHHHHh
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI-GGAGAD-TS-------IFV----------DMASHP---RSRQAFIHSSIEVARK 135 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~~~-~~-------~~~----------~~~~~~---~~r~~f~~~i~~~l~~ 135 (379)
....++++++++|++ |++|++-+ -++... .. -|. --..++ ..|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 457789999999885 89999864 221110 00 010 012234 8889999999999999
Q ss_pred cCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHH
Q 040415 136 FGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 136 ~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
+++||+-||--.... + ..-..|++++++.+++.
T Consensus 236 ~~iDGfR~D~~~~~~--~-~~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 236 YHFDGLRLDAVHAIA--D-TSAKHILEELAREVHEL 268 (542)
T ss_pred hCCcEEEEeCHHHhc--c-ccHHHHHHHHHHHHHHH
Confidence 999999999631111 1 11257899999998875
No 37
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=87.06 E-value=24 Score=32.27 Aligned_cols=198 Identities=15% Similarity=0.180 Sum_probs=107.0
Q ss_pred CCcEEEEE-EEeeeCCCc--EEEeCCc----chHHHHHHHHHHhhcCCCCeEEEEEc--CCCCC--------------Cc
Q 040415 54 LFTHIYYA-FLMPNNVTY--KFNIDNS----TAIQLSNFTTTLHHKNPPVKTLFSIG--GAGAD--------------TS 110 (379)
Q Consensus 54 ~~t~ii~~-~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lk~~~~~~kvllsig--g~~~~--------------~~ 110 (379)
.+++|++- |...+.+|. .+.+++. ....+.+..=+++.+ .++||...+. ++... ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr-~~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTR-AGVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhh-hCCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 56777764 444554441 2445554 234455544466665 4788874332 22110 11
Q ss_pred chhhhhC-CHHHHHHHHHHHHHHHHhc-CCCEEEEe-------ecCCCCC------cccchHHHHHHHHHHHHHHHHHhc
Q 040415 111 IFVDMAS-HPRSRQAFIHSSIEVARKF-GFDGLDLD-------WEFPQNP------KEMHDLGLLLDEWRLALEREAKAT 175 (379)
Q Consensus 111 ~~~~~~~-~~~~r~~f~~~i~~~l~~~-g~DGidiD-------~E~~~~~------~~~~~~~~fl~~l~~~l~~~~~~~ 175 (379)
...++.- +++.| +.|..|-.=|.+| .||||=|. +|.+... .....++.|..+|++..+...
T Consensus 109 ~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~r--- 184 (294)
T PF14883_consen 109 GYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRYR--- 184 (294)
T ss_pred CceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHhC---
Confidence 1112111 33344 5677777777777 89999884 3321110 112467889999998888753
Q ss_pred CCCCeEEEEeecccccccc-ccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHHc
Q 040415 176 CQPPLLFTAAVYFSVDFFV-ADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLRA 254 (379)
Q Consensus 176 ~~~~~~ls~a~~~~~~~~~-~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~~ 254 (379)
+.+...--+.+.+-..+ ....-+-++.++.+.-||.-+|+.-++.. .. .| ..|+...++...+.
T Consensus 185 --p~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~----~~---~~------~~WL~~Lv~~v~~~ 249 (294)
T PF14883_consen 185 --PDLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQ----AE---DP------EQWLAQLVDAVAAR 249 (294)
T ss_pred --ccchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcc----cc---CH------HHHHHHHHHHHHhc
Confidence 22222222222111100 00112345667777789999988755432 11 12 22677777777777
Q ss_pred CCCCCCeeeecccccccee
Q 040415 255 GVHRSKLVMGLPLYGRSWK 273 (379)
Q Consensus 255 gv~~~Kl~lglp~yG~~~~ 273 (379)
..+.+|+|+-|.. ++|+
T Consensus 250 p~~l~KtvFELQa--~dwr 266 (294)
T PF14883_consen 250 PGGLDKTVFELQA--VDWR 266 (294)
T ss_pred CCcccceEEEEec--cCCc
Confidence 6678999999876 4454
No 38
>PRK12313 glycogen branching enzyme; Provisional
Probab=86.50 E-value=8.4 Score=39.87 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=60.3
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE-cCCCC-CCc----------------------ch---hhhhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI-GGAGA-DTS----------------------IF---VDMASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~~-~~~----------------------~~---~~~~~~~~~r~~f~~~i~ 130 (379)
....++++++++|++ |++|++-+ -.+.. +.. .| .--..+++.|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 457789999999885 89999853 11110 000 01 001246889999999999
Q ss_pred HHHHhcCCCEEEEeec-CC----------------CCCcccchHHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDWE-FP----------------QNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E-~~----------------~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
-|++++++||+-+|-- .. +...+ ..-..|++++++.+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGREN-LEAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCC-cHHHHHHHHHHHHHHHH
Confidence 9999999999999931 00 00011 12368999999998864
No 39
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=85.79 E-value=13 Score=38.34 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEc-CCCC-CC---------c-------------chh---hhhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIG-GAGA-DT---------S-------------IFV---DMASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsig-g~~~-~~---------~-------------~~~---~~~~~~~~r~~f~~~i~ 130 (379)
....++++++++|++ |++|++-+- ++.. +. . .|. --..+++.|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 457789999999885 899998531 1111 00 0 000 01246889999999999
Q ss_pred HHHHhcCCCEEEEee-cCCC------C-----Cc-----ccchHHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDW-EFPQ------N-----PK-----EMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~-E~~~------~-----~~-----~~~~~~~fl~~l~~~l~~~ 171 (379)
-++++|++||+-||- .... . +. ....=..|++++++.+++.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 999999999999996 2110 0 00 0112368999999998864
No 40
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.78 E-value=2 Score=41.41 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeec--CCC--C--------------------Cc---c--cchHHHHHHHHHHHHH
Q 040415 119 PRSRQAFIHSSIEVARKFGFDGLDLDWE--FPQ--N--------------------PK---E--MHDLGLLLDEWRLALE 169 (379)
Q Consensus 119 ~~~r~~f~~~i~~~l~~~g~DGidiD~E--~~~--~--------------------~~---~--~~~~~~fl~~l~~~l~ 169 (379)
++.|+-..+-+++.+++|..|||.||-- ++. . +. + +++..+|++++...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4667777778889999999999999942 221 0 11 1 3567899999999998
Q ss_pred HHHHhcCCCCeEEEEee-ccccccccccccCCcChh--h-----hhhcCcEEEeecccccCCCCCCCCCCCcccCCCCCC
Q 040415 170 REAKATCQPPLLFTAAV-YFSVDFFVADVYRKYPVG--S-----INRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSN 241 (379)
Q Consensus 170 ~~~~~~~~~~~~ls~a~-~~~~~~~~~~~~~~~~~~--~-----l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~ 241 (379)
+. |++..+++++ +..... ...|+.. + =..++|++..|.|=-+.. -.++
T Consensus 261 av-----Kp~v~~svsp~n~~~~~-----~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~~-------~~~~------- 316 (418)
T COG1649 261 AV-----KPNVKFSVSPFNPLGSA-----TFAYDYFLQDWRRWVRQGLIDELAPQVYRTLST-------FVAE------- 316 (418)
T ss_pred hh-----CCCeEEEEccCCCCCcc-----ceehhhhhhhHHHHHHcccHhhhhhhhhccccc-------chhh-------
Confidence 85 4678888887 311110 0122211 1 146899999999943211 1111
Q ss_pred ccHHHHHHHHHHcCCCCC-Ceeeecccccc
Q 040415 242 LSTSYGLKSWLRAGVHRS-KLVMGLPLYGR 270 (379)
Q Consensus 242 ~~i~~~v~~~~~~gv~~~-Kl~lglp~yG~ 270 (379)
.+.....|.+.-++.. .|..|+..|..
T Consensus 317 --~~~~~~~wa~~~~~~~i~i~~G~~~~~v 344 (418)
T COG1649 317 --YDTLAKWWANTVIPTRIGIYIGLAAYKV 344 (418)
T ss_pred --hhhHHHHhhhhhcccceeeecchhhccC
Confidence 2333445555434433 67777777654
No 41
>PRK12568 glycogen branching enzyme; Provisional
Probab=85.01 E-value=13 Score=38.93 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=61.6
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEc-CCCC---------C-Cc-------------chhh---hhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIG-GAGA---------D-TS-------------IFVD---MASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsig-g~~~---------~-~~-------------~~~~---~~~~~~~r~~f~~~i~ 130 (379)
....++.+++++|++ |++|++-+- +... + .. .|.. -..+++.|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 467889999999885 899998641 1110 0 00 0111 2456789999999999
Q ss_pred HHHHhcCCCEEEEee-c-------------C-CCCCcccch--HHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDW-E-------------F-PQNPKEMHD--LGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~-E-------------~-~~~~~~~~~--~~~fl~~l~~~l~~~ 171 (379)
-|++++++||+-+|- . + |......++ -..|++++++.+++.
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 999999999999992 1 1 110011223 368999999999874
No 42
>PRK05402 glycogen branching enzyme; Provisional
Probab=83.15 E-value=17 Score=38.35 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=61.5
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE-cCCCC-C---------Cc-------------ch---hhhhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI-GGAGA-D---------TS-------------IF---VDMASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~~-~---------~~-------------~~---~~~~~~~~~r~~f~~~i~ 130 (379)
....++++++++|++ |++|+|-+ -++.. + .. .| .--..+++.|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 457789999999885 89999864 11110 0 00 01 012457889999999999
Q ss_pred HHHHhcCCCEEEEee-cCC--------------C--CCcccchHHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDW-EFP--------------Q--NPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~-E~~--------------~--~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
-|++++++||+-+|- ... . ...+...-..|++++++.++..
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999994 211 0 0001123578999999999864
No 43
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.12 E-value=11 Score=38.74 Aligned_cols=83 Identities=17% Similarity=0.261 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEE-cCCCC--CCcchh-------------------------hhhCCHHHHHHHHHHHHH
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSI-GGAGA--DTSIFV-------------------------DMASHPRSRQAFIHSSIE 131 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsi-gg~~~--~~~~~~-------------------------~~~~~~~~r~~f~~~i~~ 131 (379)
..++++++++|++ |++|++=+ -.+.. ....|. --..++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5688888888875 89999854 21110 000000 012367888999999999
Q ss_pred HHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHH
Q 040415 132 VARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 132 ~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
|++++|+||+-+|.-.... ..|+++++.+++..
T Consensus 307 W~~e~~iDGfR~D~~~~~~-------~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIHD-------IETMNEIRKALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcCC-------HHHHHHHHHHHHhh
Confidence 9999999999999742211 34788888887654
No 44
>PRK14706 glycogen branching enzyme; Provisional
Probab=82.59 E-value=19 Score=37.26 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEc-CCCC---------C-Cc-------------chh---hhhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIG-GAGA---------D-TS-------------IFV---DMASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsig-g~~~---------~-~~-------------~~~---~~~~~~~~r~~f~~~i~ 130 (379)
....++.+++++|++ |++|++-+- +... + .. .|. --..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 457789999988885 899998541 1100 0 00 010 11346889999999999
Q ss_pred HHHHhcCCCEEEEee-cCC---C-C----------CcccchHHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDW-EFP---Q-N----------PKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~-E~~---~-~----------~~~~~~~~~fl~~l~~~l~~~ 171 (379)
-|++++++||+-+|- ... . . ......=..|+++|++.+++.
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999994 211 0 0 011223568999999998874
No 45
>PLN02960 alpha-amylase
Probab=81.59 E-value=17 Score=38.59 Aligned_cols=91 Identities=11% Similarity=0.014 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEc-CCC----------CCCc--------------chhh---hhCCHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIG-GAG----------ADTS--------------IFVD---MASHPRSRQAFIHSS 129 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsig-g~~----------~~~~--------------~~~~---~~~~~~~r~~f~~~i 129 (379)
....+..+++++|++ |++|++-+- +.. ++.. .|.. -..+++.|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 457789999999884 899998651 110 0000 0110 135688999999999
Q ss_pred HHHHHhcCCCEEEEeec-------------------CCCCCcccchHHHHHHHHHHHHHHH
Q 040415 130 IEVARKFGFDGLDLDWE-------------------FPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E-------------------~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.-|+++|++||+-+|=- ++.. .....-..||++|.+.+++.
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQL 601 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhh
Confidence 99999999999999821 1111 12234678899998888753
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=81.44 E-value=4.6 Score=32.48 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEE--EEcCCCCC------------------------CcchhhhhCCHHHHHHHHHHHHHHH
Q 040415 80 IQLSNFTTTLHHKNPPVKTLF--SIGGAGAD------------------------TSIFVDMASHPRSRQAFIHSSIEVA 133 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvll--sigg~~~~------------------------~~~~~~~~~~~~~r~~f~~~i~~~l 133 (379)
..+.++++++|++ |++|++ +++ +... ...+...--|...++.++++|-.++
T Consensus 44 Dllge~v~a~h~~--Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 44 DLLGEQVEACHER--GIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred CHHHHHHHHHHHC--CCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 4567788888875 677775 443 2110 1124444556678888889999999
Q ss_pred HhcCCCEEEEee
Q 040415 134 RKFGFDGLDLDW 145 (379)
Q Consensus 134 ~~~g~DGidiD~ 145 (379)
++|++|||-+|+
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999986
No 47
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=79.18 E-value=13 Score=38.77 Aligned_cols=49 Identities=20% Similarity=0.197 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC--CcccchHHHHHHHHHH
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN--PKEMHDLGLLLDEWRL 166 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~--~~~~~~~~~fl~~l~~ 166 (379)
++..|+-+++++.-|++++|+||+-||.-.... ..+......|+++|+.
T Consensus 315 ~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 315 HPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 577888899999999999999999999743211 1112223566777665
No 48
>PRK10785 maltodextrin glucosidase; Provisional
Probab=78.08 E-value=16 Score=37.54 Aligned_cols=55 Identities=11% Similarity=0.014 Sum_probs=37.7
Q ss_pred CCHHHHHHHHH----HHHHHHHh-cCCCEEEEeecC-CCCCcccchHHHHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIH----SSIEVARK-FGFDGLDLDWEF-PQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 117 ~~~~~r~~f~~----~i~~~l~~-~g~DGidiD~E~-~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.+++.|+.+++ -+..|+++ +|+||.-||--. .........-..|++++++++++.
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 46788888886 35557886 899999999632 111112233468999999998764
No 49
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=77.08 E-value=18 Score=39.78 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEE-cCCCCCCcchh------------------------hhhCCHHHHHHHHHHHHHHHH
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSI-GGAGADTSIFV------------------------DMASHPRSRQAFIHSSIEVAR 134 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsi-gg~~~~~~~~~------------------------~~~~~~~~r~~f~~~i~~~l~ 134 (379)
..++++++++|++ |++|++=| -.+......|. .-..++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688888888874 89999853 21111000010 012346778899999999999
Q ss_pred hcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 135 KFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 135 ~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
+|++||+-||.-.. -+ ..++++++.++++
T Consensus 633 ey~VDGFRfDl~g~---~d----~~~~~~~~~~l~~ 661 (1111)
T TIGR02102 633 EFKVDGFRFDMMGD---HD----AASIEIAYKEAKA 661 (1111)
T ss_pred hcCCcEEEEecccc---CC----HHHHHHHHHHHHH
Confidence 99999999997421 12 2355566655554
No 50
>PLN03244 alpha-amylase; Provisional
Probab=75.93 E-value=41 Score=35.47 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEcCC-CC----------C--Cc-chh--------------hhhCCHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIGGA-GA----------D--TS-IFV--------------DMASHPRSRQAFIHSS 129 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~~----------~--~~-~~~--------------~~~~~~~~r~~f~~~i 129 (379)
....++.+++++|++ |++|+|-+--. .. + .. -|. --..+++.|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 457789999999885 89999864211 00 0 00 010 1123568889999999
Q ss_pred HHHHHhcCCCEEEEe
Q 040415 130 IEVARKFGFDGLDLD 144 (379)
Q Consensus 130 ~~~l~~~g~DGidiD 144 (379)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 51
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=75.87 E-value=4.5 Score=29.31 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.3
Q ss_pred cchhhhhCC-HHHHHHHHHHHHHHHHhcCCCEEEEeec
Q 040415 110 SIFVDMASH-PRSRQAFIHSSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 110 ~~~~~~~~~-~~~r~~f~~~i~~~l~~~g~DGidiD~E 146 (379)
..+....-+ +..|+.+++.+++.+..-.+|||-+|--
T Consensus 39 ~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 39 GHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred ceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 334333344 8999999999999999889999999853
No 52
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.15 E-value=40 Score=28.35 Aligned_cols=179 Identities=17% Similarity=0.140 Sum_probs=97.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccc
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADV 197 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~ 197 (379)
+|-+|+..+..+ .-|.|=| |...|...+-..||...|+++|+.... ...+|.++.--+..
T Consensus 6 SPin~eEA~eAi-----eGGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~--------d~~vSAT~GDvpYK----- 65 (235)
T COG1891 6 SPINREEAIEAI-----EGGADII--DVKNPAEGSLGANFPWVIREIREVVPE--------DQEVSATVGDVPYK----- 65 (235)
T ss_pred ccCCHHHHHHHh-----hCCCceE--eccCcccCcccCCChHHHHHHHHhCcc--------ceeeeeeecCCCCC-----
Confidence 344454444433 3355544 556666556678999999999998753 45677776532222
Q ss_pred cCCcChhhh---hhcCcEEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHH-----cCCCCCCeeeeccccc
Q 040415 198 YRKYPVGSI---NRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLR-----AGVHRSKLVMGLPLYG 269 (379)
Q Consensus 198 ~~~~~~~~l---~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~-----~gv~~~Kl~lglp~yG 269 (379)
..-..+..+ ..-+||+-+--|+-.+ -+++++.+.. ....++|+++.- -|+
T Consensus 66 PGT~slAalGaav~GaDYiKVGLYg~kn---------------------~~eA~e~m~~vvrAVkd~d~~k~VVAa-GYa 123 (235)
T COG1891 66 PGTASLAALGAAVAGADYIKVGLYGTKN---------------------EEEALEVMKNVVRAVKDFDPSKKVVAA-GYA 123 (235)
T ss_pred CchHHHHHHHhHhhCCceEEEeeccccc---------------------HHHHHHHHHHHHHHHhccCCCceEEec-ccc
Confidence 111223333 3457999998886431 2333333221 347888888763 334
Q ss_pred cceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcCCcEEEEecCceeEEEEeCCEEEEECCHHHHHHHHHHHHHc
Q 040415 270 RSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMNGATVVYDVESVSAYSFAGSTWIGYDDEISATIKIGFAQAL 349 (379)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~y~d~~Sl~~K~~~~~~~ 349 (379)
-.+++ +.++--.+.+...+.|....--++. .-+++..+-|.+..-+..-.+.++++
T Consensus 124 Da~Rv--------------------gsv~Pl~~P~vaa~ag~DvaMvDTa----iKDGkslFdfm~~e~l~eFvd~Ah~h 179 (235)
T COG1891 124 DAHRV--------------------GSVSPLLLPEVAAEAGADVAMVDTA----IKDGKSLFDFMDEEELEEFVDLAHEH 179 (235)
T ss_pred chhhc--------------------cCcCccccHHHHHhcCCCEEEEecc----cccchhHHhhhcHHHHHHHHHHHHHc
Confidence 33332 1222223333333444433221111 01345566789999999999999999
Q ss_pred CCceEEEeeccCC
Q 040415 350 GLRGYFFWALSYD 362 (379)
Q Consensus 350 gl~Gv~iW~l~~D 362 (379)
||--...=++..+
T Consensus 180 GL~~AlAGs~~~e 192 (235)
T COG1891 180 GLEVALAGSLKFE 192 (235)
T ss_pred chHHHhccccccc
Confidence 9743333344444
No 53
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=72.43 E-value=41 Score=35.46 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=58.3
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEcCC-C----------CC--C-cchh--------------hhhCCHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIGGA-G----------AD--T-SIFV--------------DMASHPRSRQAFIHSS 129 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsigg~-~----------~~--~-~~~~--------------~~~~~~~~r~~f~~~i 129 (379)
....++.+++++|++ |++|++-+--. . ++ . .-|. --..+++.|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 457789999999884 89999854111 0 00 0 0000 0123568888999999
Q ss_pred HHHHHhcCCCEEEEeec-------------CC-------CCCcccchHHHHHHHHHHHHHHH
Q 040415 130 IEVARKFGFDGLDLDWE-------------FP-------QNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E-------------~~-------~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.-|+++|++||+-||-- +. +...+ ..=+.||+.+.+.++..
T Consensus 376 ~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~~~~g~~~d-~~a~~fL~~~N~~i~~~ 436 (758)
T PLN02447 376 RWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYNEYFGMATD-VDAVVYLMLANDLLHGL 436 (758)
T ss_pred HHHHHHhCcccccccchhhhhccccCcccccccCcccccCCccC-hHHHHHHHHHHHHHHHh
Confidence 99999999999999831 10 11112 23467888888888764
No 54
>PRK03705 glycogen debranching enzyme; Provisional
Probab=71.85 E-value=16 Score=38.00 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEE-cCCCCC----C----------cch-----------------hhhhCCHHHHHHHHH
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSI-GGAGAD----T----------SIF-----------------VDMASHPRSRQAFIH 127 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsi-gg~~~~----~----------~~~-----------------~~~~~~~~~r~~f~~ 127 (379)
..++++++++|++ |++|++=+ -.+... . ..+ .--..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688888888874 89999854 211110 0 000 001246788999999
Q ss_pred HHHHHHHhcCCCEEEEeec
Q 040415 128 SSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 128 ~i~~~l~~~g~DGidiD~E 146 (379)
++.-|++++|+||+-||.-
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999974
No 55
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=70.73 E-value=11 Score=38.68 Aligned_cols=82 Identities=17% Similarity=0.036 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCCeEEEE---EcCCCCCCcchhhhhCCHHHHHHHHHHHHHHH-HhcCCCEEEEeecCCCCCcccchHHH
Q 040415 84 NFTTTLHHKNPPVKTLFS---IGGAGADTSIFVDMASHPRSRQAFIHSSIEVA-RKFGFDGLDLDWEFPQNPKEMHDLGL 159 (379)
Q Consensus 84 ~~~~~lk~~~~~~kvlls---igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l-~~~g~DGidiD~E~~~~~~~~~~~~~ 159 (379)
.+++++|++||++|+..- .-||-.+. +..--.++. .-+.-++++| --+...|++|||-.+-. ++..=..
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~g--~~~~~~~~~---~~a~Y~~~wl~ga~~~~gl~idYvg~~N--Er~~~~~ 188 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGNG--WNWPYDNPQ---LTAYYVVSWLLGAKKTHGLDIDYVGIWN--ERGFDVN 188 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGTT--SS-TTSSHH---HHHHHHHHHHHHHHHHH-----EE-S-T--TS---HH
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccCC--CCCcccchh---hhhHHHHHHHHHHHHHhCCCceEechhh--ccCCChh
Confidence 366799999999998852 23332111 101011111 1122344555 22234566788765432 2333357
Q ss_pred HHHHHHHHHHHHH
Q 040415 160 LLDEWRLALEREA 172 (379)
Q Consensus 160 fl~~l~~~l~~~~ 172 (379)
.++.||.+|++.+
T Consensus 189 ~ik~lr~~l~~~g 201 (669)
T PF02057_consen 189 YIKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcc
Confidence 7899999998743
No 56
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=70.61 E-value=97 Score=32.29 Aligned_cols=201 Identities=13% Similarity=0.118 Sum_probs=105.8
Q ss_pred CCcEEEEE-EEeeeCCCc--EEEeCCc----chHHHHHHHHHHhhcCCCCeEEEE--EcCCCCCCc--------------
Q 040415 54 LFTHIYYA-FLMPNNVTY--KFNIDNS----TAIQLSNFTTTLHHKNPPVKTLFS--IGGAGADTS-------------- 110 (379)
Q Consensus 54 ~~t~ii~~-~~~~~~~~~--~~~~~~~----~~~~~~~~~~~lk~~~~~~kvlls--igg~~~~~~-------------- 110 (379)
.+++|.+- |..++.+|. .+.+++. .++.|.+..=+++.+. ++||..- +-++.....
T Consensus 347 ~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~~ 425 (672)
T PRK14581 347 RVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGKT 425 (672)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCcc
Confidence 68888874 555655542 3556665 3455666544677763 7888743 333322100
Q ss_pred -----chhhhhC-CHHHHHHHHHHHHHHHHhc-CCCEEEEeecCCCC----------------------------Cc---
Q 040415 111 -----IFVDMAS-HPRSRQAFIHSSIEVARKF-GFDGLDLDWEFPQN----------------------------PK--- 152 (379)
Q Consensus 111 -----~~~~~~~-~~~~r~~f~~~i~~~l~~~-g~DGidiD~E~~~~----------------------------~~--- 152 (379)
.+.++-- +++. .+.|..|-.=|.+| .||||=|.-+-..+ ++
T Consensus 426 ~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~~ 504 (672)
T PRK14581 426 SIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMMQ 504 (672)
T ss_pred ccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHHH
Confidence 1111111 2233 35677777777776 79999886531110 00
Q ss_pred -----ccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccccc-ccccCCcChhhhhhcCcEEEeecccccCCCCC
Q 040415 153 -----EMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFV-ADVYRKYPVGSINRNLDWINAMCFDYHGGWDN 226 (379)
Q Consensus 153 -----~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~ 226 (379)
....++.|-.+|+...++... +.+...-.+.+.+-..+ ....-+-++.++.+..||+-+|+|-+...
T Consensus 505 ~w~~~k~~~l~~f~~~l~~~v~~~~~----p~~~tarniya~~~l~p~~~~w~aQ~l~~~~~~yD~~a~mamp~me~--- 577 (672)
T PRK14581 505 RWTRYKSKYLIDFTNELTREVRDIRG----PQVKSARNIFAMPILEPESEAWFAQNLDDFLANYDWVAPMAMPLMEK--- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcC----ccceehhcccccccCChhHHHHHHhHHHHHHhhcchhHHhhchhhhc---
Confidence 123356788888888876321 11222222222111100 00112345677788899999999865421
Q ss_pred CCCCCCcccCCCCCCccHHHHHHHHHHcCCCCCCeeeecccccccee
Q 040415 227 TTTGAHAALYDPKSNLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWK 273 (379)
Q Consensus 227 ~~~~~~spl~~~~~~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~~ 273 (379)
...+ .+..|....++.+.+.-...+|+|+-|.. ++|+
T Consensus 578 -~~~~-------~~~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 578 -VPLS-------ESNEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred -cccc-------cHHHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 1111 11225555566665444467999999865 4454
No 57
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.48 E-value=32 Score=31.71 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 94 PPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 94 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
.+..++++|+|.. .+.|++ ++..+++.|+|+|+|++--|.
T Consensus 88 ~~~p~ivsi~g~~---------------~~~~~~-~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 88 FGTPVIASIAGST---------------VEEFVE-VAEKLADAGADAIELNISCPN 127 (296)
T ss_pred CCCcEEEEEecCC---------------HHHHHH-HHHHHHHcCCCEEEEECCCCC
Confidence 4678999998742 223333 455667789999999987665
No 58
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=69.07 E-value=32 Score=32.23 Aligned_cols=75 Identities=23% Similarity=0.292 Sum_probs=49.0
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCC-CCCC----------------------------cchhhhhCCHHH
Q 040415 71 KFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGA-GADT----------------------------SIFVDMASHPRS 121 (379)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~-~~~~----------------------------~~~~~~~~~~~~ 121 (379)
........-++..++++.+|++ ++|+++.+--. ..++ ..+-. +.+++.
T Consensus 57 ~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a 133 (319)
T cd06591 57 EWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEA 133 (319)
T ss_pred eEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHH
Confidence 4444443334457788888875 78888765110 0000 11222 457889
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 122 RQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 122 r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
|+-+.+.+.+.+.+.|+||+=+|.-.|
T Consensus 134 ~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 134 REYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 998999998889999999999998543
No 59
>PRK14705 glycogen branching enzyme; Provisional
Probab=68.56 E-value=69 Score=35.82 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE-cCCCC---------CC-c-------------chhh---hhCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI-GGAGA---------DT-S-------------IFVD---MASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~~---------~~-~-------------~~~~---~~~~~~~r~~f~~~i~ 130 (379)
....++.+++++|++ |++|++-+ -+... +. . .|.. -..+++.|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567899999999885 89999853 11110 00 0 0000 1356789999999999
Q ss_pred HHHHhcCCCEEEEeec-CC--------------CCCcccc--hHHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDWE-FP--------------QNPKEMH--DLGLLLDEWRLALERE 171 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E-~~--------------~~~~~~~--~~~~fl~~l~~~l~~~ 171 (379)
-|+++|++||+-+|-- .. ..-..++ .=+.|++++.+.++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999962 11 0000112 2478999999998864
No 60
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.56 E-value=31 Score=31.91 Aligned_cols=39 Identities=15% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcC-CCEEEEeecCCC
Q 040415 95 PVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQ 149 (379)
Q Consensus 95 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g-~DGidiD~E~~~ 149 (379)
+..++++|+|.. .+.|++ ++..+++.| +|||+|+.--|.
T Consensus 91 ~~p~i~si~g~~---------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~ 130 (301)
T PRK07259 91 DTPIIANVAGST---------------EEEYAE-VAEKLSKAPNVDAIELNISCPN 130 (301)
T ss_pred CCcEEEEeccCC---------------HHHHHH-HHHHHhccCCcCEEEEECCCCC
Confidence 567899998842 123433 445567888 999999885544
No 61
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=68.11 E-value=26 Score=36.40 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCC-c-----------------------------------ccchHHHHH
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP-K-----------------------------------EMHDLGLLL 161 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~-~-----------------------------------~~~~~~~fl 161 (379)
+++.|+...+-..++.+.+.+|||.||-.-..++ + ....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4566666656566666777999999986532210 0 012356788
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEeecccccccc-ccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCCC
Q 040415 162 DEWRLALEREAKATCQPPLLFTAAVYFSVDFFV-ADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPKS 240 (379)
Q Consensus 162 ~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~-~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~~ 240 (379)
.+|....+.... +.+...-.+.+.+-..+ ....-+-++.++.+.-||+-+|+.-|... ...+ ..
T Consensus 519 ~~l~~~v~~~~~----~~~~tarni~a~~~l~p~~e~w~aQ~l~~~~~~yD~~a~mampyme~----~~~~-------~~ 583 (671)
T PRK14582 519 LELSARVKAIRG----PQVKTARNIFALPVIQPESEAWFAQNLDDFLKSYDWTAPMAMPLMEG----VAEK-------SS 583 (671)
T ss_pred HHHHHHHHhhcC----ccceeeccccccccCChhHHHHHHhHHHHHHhhcchhhhhcchhhhc----cCcc-------cH
Confidence 888888876421 12222222222111100 00112345677788899999999543321 1111 11
Q ss_pred CccHHHHHHHHHHcCCCCCCeeeecccccccee
Q 040415 241 NLSTSYGLKSWLRAGVHRSKLVMGLPLYGRSWK 273 (379)
Q Consensus 241 ~~~i~~~v~~~~~~gv~~~Kl~lglp~yG~~~~ 273 (379)
..|+...++...+.-...+|+|+-|.. ++|+
T Consensus 584 ~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 225666667666554567999999876 3454
No 62
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=66.56 E-value=63 Score=31.18 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN 150 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~ 150 (379)
..+.+.+..+|++.|.+-++.||.|... .+.|.. ++..+.+.|.|+++|++--|..
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~s-~~~~~~--------------~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEYN-KDAWEE--------------IIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCCC-HHHHHH--------------HHHHHHhcCCCEEEEECCCCCC
Confidence 3344445566666678899999955211 233322 3455677899999999987664
No 63
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=66.44 E-value=29 Score=30.13 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=40.8
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
++.+.+.|.|-|-+.+|- ......+++.+|+. +....+++.+.... -.++.+.+.
T Consensus 73 i~~~~~~g~~~i~~H~E~------~~~~~~~i~~ik~~-----------g~k~GialnP~T~~--------~~~~~~l~~ 127 (201)
T PF00834_consen 73 IEEFAEAGADYITFHAEA------TEDPKETIKYIKEA-----------GIKAGIALNPETPV--------EELEPYLDQ 127 (201)
T ss_dssp HHHHHHHT-SEEEEEGGG------TTTHHHHHHHHHHT-----------TSEEEEEE-TTS-G--------GGGTTTGCC
T ss_pred HHHHHhcCCCEEEEcccc------hhCHHHHHHHHHHh-----------CCCEEEEEECCCCc--------hHHHHHhhh
Confidence 445566799999999992 13444566665553 45667777554333 134567788
Q ss_pred CcEEEeeccc
Q 040415 210 LDWINAMCFD 219 (379)
Q Consensus 210 vD~v~lm~Yd 219 (379)
+|+|.+|+-+
T Consensus 128 vD~VlvMsV~ 137 (201)
T PF00834_consen 128 VDMVLVMSVE 137 (201)
T ss_dssp SSEEEEESS-
T ss_pred cCEEEEEEec
Confidence 9999999975
No 64
>PLN02877 alpha-amylase/limit dextrinase
Probab=66.30 E-value=38 Score=36.68 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 119 PRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 119 ~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
+-.|+-+++++.-|+++|++||.-||.-..-
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 4567888999999999999999999996443
No 65
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=66.05 E-value=20 Score=38.43 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHH
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
++..|+-+++++.-|+++|++||+-||.-... -..|++++++++++.
T Consensus 470 ~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~-------~~~f~~~~~~~l~~i 516 (898)
T TIGR02103 470 HRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHH-------PKAQMLAAREAIKAL 516 (898)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEechhhC-------CHHHHHHHHHHHHHh
Confidence 47778899999999999999999999985322 145778888877764
No 66
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=64.68 E-value=5.9 Score=29.82 Aligned_cols=20 Identities=35% Similarity=0.301 Sum_probs=8.8
Q ss_pred CcchhHHHHHHHHHHHHHHHH
Q 040415 1 MASLHYVCSLLSILVCLITIA 21 (379)
Q Consensus 1 m~~~~~~~~l~~l~~~~~~~~ 21 (379)
|.|.. +++|.++|+++++++
T Consensus 1 MaSK~-~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLIS 20 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHH
Confidence 77643 333333333333333
No 67
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=64.56 E-value=43 Score=31.53 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=35.2
Q ss_pred CCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 75 DNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 75 ~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
++.....+.+.+..++++ .++.++++|+|.+. + .+ ..++..+++.|+|+|+|++-.|.
T Consensus 82 ~n~g~d~~~~~i~~~~~~-~~~pvi~sI~g~~~--~-------------e~-~~~a~~~~~agad~ielN~scpp 139 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEA-VDIPVIASLNGSSA--G-------------GW-VDYARQIEQAGADALELNIYYLP 139 (334)
T ss_pred cCcCHHHHHHHHHHHHHh-cCCcEEEEeccCCH--H-------------HH-HHHHHHHHHcCCCEEEEeCCCCC
Confidence 333344455555455543 35788999988421 1 22 23455567779999999986543
No 68
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=63.99 E-value=1.3e+02 Score=28.15 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=29.2
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
..+++.|+-+.+.+..++.+.|+||+=+|+-.|.
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 4688999999999988888999999999985443
No 69
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=63.96 E-value=32 Score=31.16 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=42.4
Q ss_pred EeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 73 NIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 73 ~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
......-++..++++.+|++ ++|+++.+-- ..|+-+.+.+.+++.+.|+||+=+|.-.+
T Consensus 59 ~~d~~~Fpdp~~~i~~l~~~--g~~~~~~~~P---------------~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 59 DWDAGKFPNPKSMIDELHDN--GVKLVLWIDP---------------YIREWWAEVVKKLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred ecChhhCCCHHHHHHHHHHC--CCEEEEEeCh---------------hHHHHHHHHHHHhhccCCCCEEeccCCCC
Confidence 33333334567888888884 8999997622 12777777788877889999999998544
No 70
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=63.72 E-value=31 Score=33.37 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=41.2
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC----Ccc---cchH----HHHHHHHHHHHHHHHHhcCCCCeEEEE
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN----PKE---MHDL----GLLLDEWRLALEREAKATCQPPLLFTA 184 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~----~~~---~~~~----~~fl~~l~~~l~~~~~~~~~~~~~ls~ 184 (379)
+++++.|+-+.+.+.++++++|+|.|-+|+..... +.. ...+ -+++++|++++ |.+.+..
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~---------P~v~iE~ 232 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF---------PDVLIEN 232 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT---------TTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC---------CCcEEEe
Confidence 46788999999999999999999999999964321 111 1222 33555555554 5677877
Q ss_pred eecc
Q 040415 185 AVYF 188 (379)
Q Consensus 185 a~~~ 188 (379)
+...
T Consensus 233 CssG 236 (394)
T PF02065_consen 233 CSSG 236 (394)
T ss_dssp -BTT
T ss_pred ccCC
Confidence 7543
No 71
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.81 E-value=57 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=28.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
..+++.|+=+.+.+.+++.+.|+||+=+|+-.+
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 568899999999888999899999999999543
No 72
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=58.35 E-value=63 Score=30.12 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=44.7
Q ss_pred eCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcC-CCEEEEeecCCCCCc
Q 040415 74 IDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQNPK 152 (379)
Q Consensus 74 ~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g-~DGidiD~E~~~~~~ 152 (379)
+++.....+.+.+..+++..++..+++||-|.+ .+.| . .+++.++..+ .|.|+|++--|..+.
T Consensus 71 l~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~--~~~~-------------~-~~a~~~~~~g~ad~iElN~ScPn~~~ 134 (310)
T PRK02506 71 LPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLS--PEET-------------H-TILKKIQASDFNGLVELNLSCPNVPG 134 (310)
T ss_pred CCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCc--HHHH-------------H-HHHHHHhhcCCCCEEEEECCCCCCCC
Confidence 444444445554545555545678888987743 2222 1 2334455677 799999998774322
Q ss_pred ------ccchHHHHHHHHHHHH
Q 040415 153 ------EMHDLGLLLDEWRLAL 168 (379)
Q Consensus 153 ------~~~~~~~fl~~l~~~l 168 (379)
|.+.+.++++.+++..
T Consensus 135 ~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 135 KPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred ccccccCHHHHHHHHHHHHHhc
Confidence 2334555555555543
No 73
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=58.19 E-value=35 Score=35.05 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=58.8
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE-cCCCC---------C--------------Ccchhhh---hCCHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI-GGAGA---------D--------------TSIFVDM---ASHPRSRQAFIHSSI 130 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi-gg~~~---------~--------------~~~~~~~---~~~~~~r~~f~~~i~ 130 (379)
.+..++.+++++|++ ++-|+|=+ -+... + ...|... ....+.|.=|++++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 578899999999985 78998843 22111 0 0112111 224678888999999
Q ss_pred HHHHhcCCCEEEEeec----C-----------CCCC--cccchHHHHHHHHHHHHHH
Q 040415 131 EVARKFGFDGLDLDWE----F-----------PQNP--KEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E----~-----------~~~~--~~~~~~~~fl~~l~~~l~~ 170 (379)
-+|++|.+||+-+|-- + +... .+.-.-++|++++.+.++.
T Consensus 290 ~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~~ggr~n~~a~efl~~~n~~i~~ 346 (628)
T COG0296 290 YWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNEYGGRENLEAAEFLRNLNSLIHE 346 (628)
T ss_pred HHHHHhCCcceeeehhhhhhccchhhhhhcccccccCCcccHHHHHHhhhhhhhhcc
Confidence 9999999999988831 1 1111 1223356777777777765
No 74
>PRK03995 hypothetical protein; Provisional
Probab=57.77 E-value=33 Score=31.18 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=42.1
Q ss_pred CCCCeEEEEEcCCCCCCcchhhhhCCHH----------HHHHHH-HHHHHHHHhc--CCCEEEEeecCCCCCcccchHHH
Q 040415 93 NPPVKTLFSIGGAGADTSIFVDMASHPR----------SRQAFI-HSSIEVARKF--GFDGLDLDWEFPQNPKEMHDLGL 159 (379)
Q Consensus 93 ~~~~kvllsigg~~~~~~~~~~~~~~~~----------~r~~f~-~~i~~~l~~~--g~DGidiD~E~~~~~~~~~~~~~ 159 (379)
....++++.|||... ...|.+++...+ ....+- +.+.+.+.+. ++|.+-|||....+ .++..+.+
T Consensus 178 ~~~~~~~iGiGGgHY-apr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~ 255 (267)
T PRK03995 178 YEKFKPAIGIGGGHY-APKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIE 255 (267)
T ss_pred ccCCCEEEEECCCCc-cHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHH
Confidence 357789999999776 444544433220 000011 1244455553 68999999986664 67777777
Q ss_pred HHHHH
Q 040415 160 LLDEW 164 (379)
Q Consensus 160 fl~~l 164 (379)
+++++
T Consensus 256 ~le~~ 260 (267)
T PRK03995 256 FLEEL 260 (267)
T ss_pred HHHHC
Confidence 76654
No 75
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=57.31 E-value=71 Score=31.14 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 86 TTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 86 ~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
+..+++..++..++++|.|... . +.++ ..+..+++.|.|+|+|++-.|.
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~-~-------------~~~~-~~a~~~~~~g~d~ielN~scP~ 138 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECN-E-------------EEWK-EIAPLVEETGADGIELNFGCPH 138 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCC-H-------------HHHH-HHHHHHHhcCCCEEEEeCCCCC
Confidence 3345444455667899977411 1 1222 3455567778999999998776
No 76
>PRK09936 hypothetical protein; Provisional
Probab=56.52 E-value=1.6e+02 Score=27.04 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=49.8
Q ss_pred CCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHH-----
Q 040415 53 NLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIH----- 127 (379)
Q Consensus 53 ~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~----- 127 (379)
..|.++|+-|-.... . .+... +.-+.+.++.+++ .|+||.+.+ -.|++-|..+..|++..+.+-+
T Consensus 50 ~G~~tLivQWt~yG~-~---~fg~~-~g~La~~l~~A~~--~Gl~v~vGL---~~Dp~y~q~~~~d~~~~~~yl~~~l~~ 119 (296)
T PRK09936 50 QGFDTLVVQWTRYGD-A---DFGGQ-RGWLAKRLAAAQQ--AGLKLVVGL---YADPEFFMHQKQDGAALESYLNRQLGA 119 (296)
T ss_pred cCCcEEEEEeeeccC-C---Ccccc-hHHHHHHHHHHHH--cCCEEEEcc---cCChHHHHHHhcCchhHHHHHHHHHHH
Confidence 479999998866531 1 22222 3334445555555 489998844 3447777777556555554433
Q ss_pred ---HHHHHHHhcCC--CEEEEeecC
Q 040415 128 ---SSIEVARKFGF--DGLDLDWEF 147 (379)
Q Consensus 128 ---~i~~~l~~~g~--DGidiD~E~ 147 (379)
....+-...++ +|--|=.|-
T Consensus 120 ~~~qa~~~~~~~~~~v~GWYiP~El 144 (296)
T PRK09936 120 SLQQARLWSAAWGVPVDGWYLPAEL 144 (296)
T ss_pred HHHHHHHHHhccCCCCCeEEeeecc
Confidence 22334445556 898777773
No 77
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=56.09 E-value=1.1e+02 Score=28.17 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=41.4
Q ss_pred eCCcchHHHHHHHHHHhhc--CCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhc--CCCEEEEeecCCC
Q 040415 74 IDNSTAIQLSNFTTTLHHK--NPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKF--GFDGLDLDWEFPQ 149 (379)
Q Consensus 74 ~~~~~~~~~~~~~~~lk~~--~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--g~DGidiD~E~~~ 149 (379)
+++.....+.+.+..+++. .++.-++++|+|. . +.+++.+..+.... +.|+|||++--|.
T Consensus 68 ~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~---------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn 131 (294)
T cd04741 68 LPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGS-A---------------EDIAAMYKKIAAHQKQFPLAMELNLSCPN 131 (294)
T ss_pred CCCcCHHHHHHHHHHHhhhccccCCeEEEECCCC-H---------------HHHHHHHHHHHhhccccccEEEEECCCCC
Confidence 4444334444444344332 2456788899773 1 13333333333322 6999999998765
Q ss_pred CC------cccchHHHHHHHHHHHH
Q 040415 150 NP------KEMHDLGLLLDEWRLAL 168 (379)
Q Consensus 150 ~~------~~~~~~~~fl~~l~~~l 168 (379)
.. .+.+.+.++++.+++..
T Consensus 132 ~~~~~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 132 VPGKPPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred CCCcccccCCHHHHHHHHHHHHHhc
Confidence 31 13344555555555543
No 78
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=55.63 E-value=64 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
.+|++.|+=+.+.+.+++.+.|+||+=+|+-.|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 5678899988888888899999999999986543
No 79
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=55.13 E-value=62 Score=30.64 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE--cCCCCCCc--c---h--hhh----------hCCH----HHHHHHHHHHHHHHH
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI--GGAGADTS--I---F--VDM----------ASHP----RSRQAFIHSSIEVAR 134 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~~~--~---~--~~~----------~~~~----~~r~~f~~~i~~~l~ 134 (379)
.-..++++.+.+|++ +.|+++-+ +|...... . . +.+ ..+. +..+.|++... .++
T Consensus 75 ~i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~-ra~ 151 (343)
T cd04734 75 IIPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR-RCQ 151 (343)
T ss_pred HHHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH-HHH
Confidence 346778888888885 56777655 33211100 0 0 000 0122 34455665443 556
Q ss_pred hcCCCEEEEee
Q 040415 135 KFGFDGLDLDW 145 (379)
Q Consensus 135 ~~g~DGidiD~ 145 (379)
+-|||||+|..
T Consensus 152 ~aGfDgVeih~ 162 (343)
T cd04734 152 AGGLDGVELQA 162 (343)
T ss_pred HcCCCEEEEcc
Confidence 67999999998
No 80
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=54.59 E-value=52 Score=28.94 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=56.8
Q ss_pred CCCeEEEEEcCCCCCCcchhhhhC-CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHH
Q 040415 94 PPVKTLFSIGGAGADTSIFVDMAS-HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREA 172 (379)
Q Consensus 94 ~~~kvllsigg~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~ 172 (379)
++-+..+=|.=. .....+.. +.+....++..+..-.. ..++-+|.|....+++.-++.+++||+.|++.+
T Consensus 66 ~~Y~P~lHiDVY----GtiG~~f~~d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g 136 (248)
T PF07476_consen 66 EDYRPVLHIDVY----GTIGLAFDNDPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQIEALAELREELDRRG 136 (248)
T ss_dssp TT---EEEEE-T----THHHHHTTT-HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCccEEEEcc----chHHHHhCCCHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcC
Confidence 555555544221 12333333 44444455555555544 356789999887888999999999999999843
Q ss_pred HhcCCCCeEEEEeeccccccccccccCCcChhhh--hhcCcEEEeecccccC
Q 040415 173 KATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSI--NRNLDWINAMCFDYHG 222 (379)
Q Consensus 173 ~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l--~~~vD~v~lm~Yd~~~ 222 (379)
.+..|.+.-+++... |+..+ +..+|+|.+.|=|+.|
T Consensus 137 -----~~v~iVADEWCNT~e---------DI~~F~da~A~dmVQIKtPDLGg 174 (248)
T PF07476_consen 137 -----INVEIVADEWCNTLE---------DIREFADAKAADMVQIKTPDLGG 174 (248)
T ss_dssp -------EEEEE-TT--SHH---------HHHHHHHTT-SSEEEE-GGGGSS
T ss_pred -----CCCeEEeehhcCCHH---------HHHHHHhcCCcCEEEecCCCccc
Confidence 133444433443332 44444 4669999999999875
No 81
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=53.79 E-value=82 Score=25.21 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhC-CHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMAS-HPRSRQAFIHSSIEVARKFGFDGLDLD 144 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~g~DGidiD 144 (379)
-.+++-+++.+++. |+++++-|--. ...|...+. +.+.|+.+.+.|...++++||.=+|+-
T Consensus 35 y~Dl~l~L~~~k~~--g~~~lfVi~Pv---Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s 96 (130)
T PF04914_consen 35 YDDLQLLLDVCKEL--GIDVLFVIQPV---NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADFS 96 (130)
T ss_dssp HHHHHHHHHHHHHT--T-EEEEEE-------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-T
T ss_pred HHHHHHHHHHHHHc--CCceEEEecCC---cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEecc
Confidence 35566677777775 67777654322 333444333 789999999999999999999555543
No 82
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=53.72 E-value=1.9e+02 Score=26.84 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=13.0
Q ss_pred HHHHHHH-HhhcCCCCeEEEEE
Q 040415 82 LSNFTTT-LHHKNPPVKTLFSI 102 (379)
Q Consensus 82 ~~~~~~~-lk~~~~~~kvllsi 102 (379)
+.+.+.. -|+++.|+|||+-+
T Consensus 103 ~~k~ieiakRAk~~GmKVl~dF 124 (403)
T COG3867 103 LKKAIEIAKRAKNLGMKVLLDF 124 (403)
T ss_pred HHHHHHHHHHHHhcCcEEEeec
Confidence 3444432 23466899999965
No 83
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=52.96 E-value=1.2e+02 Score=28.08 Aligned_cols=53 Identities=17% Similarity=0.217 Sum_probs=32.0
Q ss_pred HHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC
Q 040415 83 SNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN 150 (379)
Q Consensus 83 ~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~ 150 (379)
.+.+..+++..++.-+++++.|... . +.+++ +++.+.+.++|+|+|++--|..
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~~~-~-------------~~~~~-~a~~~~~~gad~ielN~sCP~~ 139 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCEYN-K-------------EDWTE-LAKLVEEAGADALELNFSCPHG 139 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCC-H-------------HHHHH-HHHHHHhcCCCEEEEECCCCCC
Confidence 3334455544445667888877411 1 23332 3455566789999999987764
No 84
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.54 E-value=82 Score=29.94 Aligned_cols=67 Identities=22% Similarity=0.316 Sum_probs=37.3
Q ss_pred CcchHHHHHHHHHHhhcCCCCeEEEEE--cCCCCCCc-----------c---------hhhhhCC---HHHHHHHHHHHH
Q 040415 76 NSTAIQLSNFTTTLHHKNPPVKTLFSI--GGAGADTS-----------I---------FVDMASH---PRSRQAFIHSSI 130 (379)
Q Consensus 76 ~~~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~~~-----------~---------~~~~~~~---~~~r~~f~~~i~ 130 (379)
+..-..++++++.+|++ |.|+++=+ +|...... . ..+.++. .+..+.|++..
T Consensus 74 d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA- 150 (353)
T cd04735 74 DSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT- 150 (353)
T ss_pred hhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH-
Confidence 33457788888888885 56777654 22211000 0 0011111 13445566544
Q ss_pred HHHHhcCCCEEEEee
Q 040415 131 EVARKFGFDGLDLDW 145 (379)
Q Consensus 131 ~~l~~~g~DGidiD~ 145 (379)
..+++-|||||+|.-
T Consensus 151 ~~a~~aGfDgVeih~ 165 (353)
T cd04735 151 RRAIEAGFDGVEIHG 165 (353)
T ss_pred HHHHHcCCCEEEEcc
Confidence 445668999999985
No 85
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=51.33 E-value=23 Score=26.03 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHhcCCCEEEEeecCCCC-C-------------cccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccccccccc
Q 040415 133 ARKFGFDGLDLDWEFPQN-P-------------KEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVY 198 (379)
Q Consensus 133 l~~~g~DGidiD~E~~~~-~-------------~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 198 (379)
+.+++.|.--+-||--+. + ...+.+..++++..+.+++.. +...||+.......
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d-----P~~pvt~g~~~~~~------- 69 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD-----PSQPVTSGFWGGDW------- 69 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT------TTS-EE--B--S-T-------
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC-----CCCcEEeecccCCH-------
Confidence 556666666666652221 1 124568888888888887743 44556655432211
Q ss_pred CCcChhhhh-hcCcEEEeecc
Q 040415 199 RKYPVGSIN-RNLDWINAMCF 218 (379)
Q Consensus 199 ~~~~~~~l~-~~vD~v~lm~Y 218 (379)
..+..+. +.+|++.+..|
T Consensus 70 --~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 70 --EDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp --THHHHS--TT-SSEEB-EE
T ss_pred --HHHHHhchhcCCEEeeecC
Confidence 1244454 78898887665
No 86
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=50.78 E-value=8.1 Score=29.94 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=14.0
Q ss_pred HHHHHHcCCCCCCeeeec
Q 040415 248 LKSWLRAGVHRSKLVMGL 265 (379)
Q Consensus 248 v~~~~~~gv~~~Kl~lgl 265 (379)
.+.++.+|||++.||||.
T Consensus 80 a~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 80 AEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHHHTT--GGGEEETT
T ss_pred HHHHHHcCCCHHHEEEcc
Confidence 467889999999999995
No 87
>PRK08005 epimerase; Validated
Probab=50.41 E-value=61 Score=28.34 Aligned_cols=65 Identities=12% Similarity=0.006 Sum_probs=41.2
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
+..+.+.|.|-|-|.+|-. ....++++.+|+. +...-+|+.+.... -.+..+.+.
T Consensus 74 i~~~~~~gad~It~H~Ea~------~~~~~~l~~Ik~~-----------G~k~GlAlnP~Tp~--------~~i~~~l~~ 128 (210)
T PRK08005 74 LPWLAAIRPGWIFIHAESV------QNPSEILADIRAI-----------GAKAGLALNPATPL--------LPYRYLALQ 128 (210)
T ss_pred HHHHHHhCCCEEEEcccCc------cCHHHHHHHHHHc-----------CCcEEEEECCCCCH--------HHHHHHHHh
Confidence 4445557999999999932 2344555555543 34456666543332 134566789
Q ss_pred CcEEEeeccc
Q 040415 210 LDWINAMCFD 219 (379)
Q Consensus 210 vD~v~lm~Yd 219 (379)
+|+|.+|+-+
T Consensus 129 vD~VlvMsV~ 138 (210)
T PRK08005 129 LDALMIMTSE 138 (210)
T ss_pred cCEEEEEEec
Confidence 9999999975
No 88
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=50.34 E-value=58 Score=28.92 Aligned_cols=66 Identities=23% Similarity=0.102 Sum_probs=40.4
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
+..+.+.|.|=|-|..|-.. .....+++.+|+. +...-+++.+.... -.+..+.+.
T Consensus 75 i~~~~~aGad~it~H~Ea~~-----~~~~~~i~~Ik~~-----------G~kaGlalnP~T~~--------~~l~~~l~~ 130 (229)
T PRK09722 75 IDQLADAGADFITLHPETIN-----GQAFRLIDEIRRA-----------GMKVGLVLNPETPV--------ESIKYYIHL 130 (229)
T ss_pred HHHHHHcCCCEEEECccCCc-----chHHHHHHHHHHc-----------CCCEEEEeCCCCCH--------HHHHHHHHh
Confidence 34444559999999998321 2234455555443 34455665543332 135567788
Q ss_pred CcEEEeeccc
Q 040415 210 LDWINAMCFD 219 (379)
Q Consensus 210 vD~v~lm~Yd 219 (379)
+|+|.+|+-+
T Consensus 131 vD~VLvMsV~ 140 (229)
T PRK09722 131 LDKITVMTVD 140 (229)
T ss_pred cCEEEEEEEc
Confidence 9999999986
No 89
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=48.50 E-value=1.4e+02 Score=27.56 Aligned_cols=147 Identities=15% Similarity=0.166 Sum_probs=73.9
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcC-CCEEEEeecCCCCCc-ccchHHH
Q 040415 82 LSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWEFPQNPK-EMHDLGL 159 (379)
Q Consensus 82 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g-~DGidiD~E~~~~~~-~~~~~~~ 159 (379)
..-+++.+++. +..++..+-.+...+. .-+.+.-+.+.+.|++-|+..+ +|||-++.-.-...+ ..+.=..
T Consensus 47 ~~g~~~~a~~~--g~e~vp~~~a~A~P~G-----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~EG~ 119 (292)
T PF07364_consen 47 IGGFLDAAEAQ--GWEVVPLLWAAAEPGG-----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGEGD 119 (292)
T ss_dssp HHHHHHHHHHT--T-EEEEEEEEEE-SEE------B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHHHH
T ss_pred hHHHHHHHHHC--CCEEEeeEeeeecCCC-----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCchHH
Confidence 34456566554 6787766633322112 2245778889999999999986 999999996543222 2234567
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeecccccCCCCCCCCCCCcccCCCC
Q 040415 160 LLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYHGGWDNTTTGAHAALYDPK 239 (379)
Q Consensus 160 fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~~~~~~~~~~~~spl~~~~ 239 (379)
|++++|+.++. ...+.+++-...+. -+++.+.+|-+.. | .+.||.-.+.
T Consensus 120 Ll~rvR~~vGp--------~vpI~~tlDlHaNv----------s~~mv~~ad~~~~--y---------rtyPH~D~~e-- 168 (292)
T PF07364_consen 120 LLRRVRAIVGP--------DVPIAATLDLHANV----------SPRMVEAADIIVG--Y---------RTYPHIDMYE-- 168 (292)
T ss_dssp HHHHHHHHHTT--------TSEEEEEE-TT--------------HHHHHH-SEEEE--------------SS---HHH--
T ss_pred HHHHHHHHhCC--------CCeEEEEeCCCCCc----------cHHHHHhCCEEEE--c---------CCCCccCHHH--
Confidence 99999999863 45566665332222 3577788886554 3 2223332210
Q ss_pred CCccHHHHHHHHH---HcCCCCCCeeeeccccc
Q 040415 240 SNLSTSYGLKSWL---RAGVHRSKLVMGLPLYG 269 (379)
Q Consensus 240 ~~~~i~~~v~~~~---~~gv~~~Kl~lglp~yG 269 (379)
.-+.+.+.+. +.++.|-+...-+|+-.
T Consensus 169 ---tg~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 169 ---TGERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp ---HHHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred ---HHHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 1233334333 34566777777777654
No 90
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=47.80 E-value=1.4e+02 Score=27.92 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
..+.+.+..++++ .+.-++++|.|.+ .+ .| ..++..+++.|+|+|+|+.-.+
T Consensus 85 ~~~~~~i~~~~~~-~~~pvi~si~g~~--~~-------------~~-~~~a~~~~~~gad~iElN~s~~ 136 (325)
T cd04739 85 EEYLELIRRAKRA-VSIPVIASLNGVS--AG-------------GW-VDYARQIEEAGADALELNIYAL 136 (325)
T ss_pred HHHHHHHHHHHhc-cCCeEEEEeCCCC--HH-------------HH-HHHHHHHHhcCCCEEEEeCCCC
Confidence 3334433344332 3567889997732 11 22 2345556777899999999754
No 91
>PRK01060 endonuclease IV; Provisional
Probab=47.57 E-value=57 Score=29.59 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 126 IHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 126 ~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
+...++.+++.|||||+|..+.|..-.....-...++++|+.+.+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~ 58 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEK 58 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHH
Confidence 455789999999999999877554311112233457777777765
No 92
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=47.53 E-value=60 Score=30.29 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeec
Q 040415 123 QAFIHSSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 123 ~~f~~~i~~~l~~~g~DGidiD~E 146 (379)
+.|++.. ..+.+-|||||+|..-
T Consensus 141 ~~~~~aA-~~a~~aGfDgveih~~ 163 (327)
T cd02803 141 EDFAAAA-RRAKEAGFDGVEIHGA 163 (327)
T ss_pred HHHHHHH-HHHHHcCCCEEEEcch
Confidence 3444433 3445579999999863
No 93
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=47.05 E-value=42 Score=31.81 Aligned_cols=41 Identities=12% Similarity=0.280 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEeeccCCCcccHHHHHHHhc
Q 040415 334 DDEISATIKIGFAQALGLRGYFFWALSYDNEWKISTQVARAW 375 (379)
Q Consensus 334 ~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd~~~l~~a~~~~~ 375 (379)
.++.+++..+++|+++|+-|+.+|..-++ ...||..-.+.+
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~-gk~lLe~p~~~~ 95 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFN-GKRLLEKPLENL 95 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecC-CchHHHHHHHHH
Confidence 48999999999999999999999988885 455555444433
No 94
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=46.16 E-value=95 Score=26.71 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=42.5
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhh
Q 040415 129 SIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR 208 (379)
Q Consensus 129 i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (379)
.+.-+.+-|.+.+-|.+|-.. ....+++.+|+. +...-+++-+.... -++..+.+
T Consensus 79 ~V~~~a~agas~~tfH~E~~q------~~~~lv~~ir~~-----------Gmk~G~alkPgT~V--------e~~~~~~~ 133 (224)
T KOG3111|consen 79 WVDQMAKAGASLFTFHYEATQ------KPAELVEKIREK-----------GMKVGLALKPGTPV--------EDLEPLAE 133 (224)
T ss_pred HHHHHHhcCcceEEEEEeecc------CHHHHHHHHHHc-----------CCeeeEEeCCCCcH--------HHHHHhhc
Confidence 345556679999999998321 144555555442 46677777553332 24556677
Q ss_pred cCcEEEeeccc
Q 040415 209 NLDWINAMCFD 219 (379)
Q Consensus 209 ~vD~v~lm~Yd 219 (379)
.+|++.+||..
T Consensus 134 ~~D~vLvMtVe 144 (224)
T KOG3111|consen 134 HVDMVLVMTVE 144 (224)
T ss_pred cccEEEEEEec
Confidence 89999999975
No 95
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.11 E-value=1e+02 Score=29.47 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecC
Q 040415 121 SRQAFIHSSIEVARKFGFDGLDLDWEF 147 (379)
Q Consensus 121 ~r~~f~~~i~~~l~~~g~DGidiD~E~ 147 (379)
..+.|++.. ..+++-|||||+|.--.
T Consensus 142 ii~~f~~AA-~~a~~aGfDgVeih~ah 167 (361)
T cd04747 142 VIAAFARAA-ADARRLGFDGIELHGAH 167 (361)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEeccc
Confidence 344555533 45566799999999644
No 96
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=45.64 E-value=1.8e+02 Score=30.53 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcCCCCeEE---EEE-cCCCC---CCcch------------------h-----------hhhCCHHHHH
Q 040415 80 IQLSNFTTTLHHKNPPVKTL---FSI-GGAGA---DTSIF------------------V-----------DMASHPRSRQ 123 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvl---lsi-gg~~~---~~~~~------------------~-----------~~~~~~~~r~ 123 (379)
..+..++..+|++.+++|-+ -++ |-|+. +...+ . ..+-+++...
T Consensus 305 ~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~Pe~~~ 384 (777)
T PLN02711 305 KGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVPPELAY 384 (777)
T ss_pred CcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccCHHHHH
Confidence 46788899999988877744 344 22322 11010 0 1135678889
Q ss_pred HHHHHHHHHHHhcCCCEEEEeecCCCC--CcccchHHHHHHHHHHHHHHHHHhcC
Q 040415 124 AFIHSSIEVARKFGFDGLDLDWEFPQN--PKEMHDLGLLLDEWRLALEREAKATC 176 (379)
Q Consensus 124 ~f~~~i~~~l~~~g~DGidiD~E~~~~--~~~~~~~~~fl~~l~~~l~~~~~~~~ 176 (379)
+|-+.+-++|..-|+|||-+|-+.... .++...=.++.+...++|.+.-..+.
T Consensus 385 ~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F 439 (777)
T PLN02711 385 QMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHF 439 (777)
T ss_pred HHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999764311 12223345677777777766544433
No 97
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=45.30 E-value=88 Score=27.76 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=41.7
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCe--EEEEeeccccccccccccCCcChhhhh
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPL--LFTAAVYFSVDFFVADVYRKYPVGSIN 207 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~--~ls~a~~~~~~~~~~~~~~~~~~~~l~ 207 (379)
+..+.+.|.|-|-|..|-. ....++++.+|+. +. ..-+++.|.... -.+..+.
T Consensus 84 i~~~~~aGad~It~H~Ea~------~~~~~~l~~Ik~~-----------g~~~kaGlalnP~Tp~--------~~i~~~l 138 (228)
T PRK08091 84 AKACVAAGADIVTLQVEQT------HDLALTIEWLAKQ-----------KTTVLIGLCLCPETPI--------SLLEPYL 138 (228)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC-----------CCCceEEEEECCCCCH--------HHHHHHH
Confidence 4445566999999999932 2344555555543 23 455665443332 1356677
Q ss_pred hcCcEEEeecccc
Q 040415 208 RNLDWINAMCFDY 220 (379)
Q Consensus 208 ~~vD~v~lm~Yd~ 220 (379)
+.+|+|.+|+-+-
T Consensus 139 ~~vD~VLiMtV~P 151 (228)
T PRK08091 139 DQIDLIQILTLDP 151 (228)
T ss_pred hhcCEEEEEEECC
Confidence 8899999999863
No 98
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=44.71 E-value=71 Score=28.98 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
...++.+++.|||||+|....+........-..-++++++.+.+
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEE 56 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999875443211111112457777777765
No 99
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.39 E-value=62 Score=28.86 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 126 IHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 126 ~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
....++.+++.|||||+|.+.+ . .-++++++.++.
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~--~--------~~~~~l~~~l~~ 50 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPY--D--------WDAEALKARLAA 50 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCc--c--------CCHHHHHHHHHH
Confidence 4567888899999999997632 1 125666776665
No 100
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.32 E-value=1.9e+02 Score=27.32 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-----Ccccch
Q 040415 82 LSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-----PKEMHD 156 (379)
Q Consensus 82 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-----~~~~~~ 156 (379)
...+++.+++...++-+++||+|.... .....-+.|++.+-.+ .. +.|++++++--|.. .++.+.
T Consensus 124 ~~~~~~~l~~~~~~~pvivsI~~~~~~--------~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~ 193 (344)
T PRK05286 124 ADALAERLKKAYRGIPLGINIGKNKDT--------PLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEA 193 (344)
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCC--------CcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHH
Confidence 444454554422567799999885310 0112233444444333 33 49999999976643 233456
Q ss_pred HHHHHHHHHHHHH
Q 040415 157 LGLLLDEWRLALE 169 (379)
Q Consensus 157 ~~~fl~~l~~~l~ 169 (379)
+.++++++|+..+
T Consensus 194 ~~eiv~aVr~~~~ 206 (344)
T PRK05286 194 LDELLAALKEAQA 206 (344)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777764
No 101
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=42.04 E-value=83 Score=29.88 Aligned_cols=65 Identities=22% Similarity=0.251 Sum_probs=35.2
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE--cCCCCCCc--------------chhhhhCC---HHHHHHHHHHHHHHHHhcCC
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI--GGAGADTS--------------IFVDMASH---PRSRQAFIHSSIEVARKFGF 138 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~~~--------------~~~~~~~~---~~~r~~f~~~i~~~l~~~g~ 138 (379)
.-..++++++.+|+. +.|+++=+ +|...... ...+.++. .+..+.|++... .+++-||
T Consensus 75 ~i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~-~a~~aGf 151 (353)
T cd02930 75 QAAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAA-LAREAGY 151 (353)
T ss_pred HHHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 346677788788875 67877665 22211000 00011111 134445555444 4556799
Q ss_pred CEEEEee
Q 040415 139 DGLDLDW 145 (379)
Q Consensus 139 DGidiD~ 145 (379)
|||+|.-
T Consensus 152 DgVeih~ 158 (353)
T cd02930 152 DGVEIMG 158 (353)
T ss_pred CEEEEec
Confidence 9999975
No 102
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=41.98 E-value=1.5e+02 Score=33.36 Aligned_cols=50 Identities=22% Similarity=0.209 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.++..|+-+++++.-|++ +|+||+-||.-....... ..|+++++..+++.
T Consensus 316 ~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 316 ERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred CCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 356778788888888999 999999999743221011 23556666666553
No 103
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=41.96 E-value=1.1e+02 Score=26.82 Aligned_cols=44 Identities=20% Similarity=0.491 Sum_probs=28.5
Q ss_pred HhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 89 LHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 89 lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
......+..++++|+|.. .+ .|++ .+..+.+.|||||+|+.-.|
T Consensus 48 ~~~~~~~~p~~~qi~g~~--~~-------------~~~~-aa~~~~~aG~d~ieln~g~p 91 (231)
T cd02801 48 LTRNPEERPLIVQLGGSD--PE-------------TLAE-AAKIVEELGADGIDLNMGCP 91 (231)
T ss_pred hccCccCCCEEEEEcCCC--HH-------------HHHH-HHHHHHhcCCCEEEEeCCCC
Confidence 334456788999998853 12 2222 34455567999999997554
No 104
>PRK14866 hypothetical protein; Provisional
Probab=40.97 E-value=81 Score=31.03 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=41.1
Q ss_pred CCCeEEEEEcCCCCCCcchhhhhCCH---------HHH-HHHH-H-HHHHHHHhcCCCEEEEeecCCCCCcccchHHHHH
Q 040415 94 PPVKTLFSIGGAGADTSIFVDMASHP---------RSR-QAFI-H-SSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLL 161 (379)
Q Consensus 94 ~~~kvllsigg~~~~~~~~~~~~~~~---------~~r-~~f~-~-~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl 161 (379)
.+.++++.|||... ...|.+++... +.. ..+- . .+.+.+++.+.|.+.|||....+ .++..+..++
T Consensus 183 ~~~~~~iG~GGgHY-apr~t~i~le~~~~~GHi~pky~l~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~~l 260 (451)
T PRK14866 183 HTDRPLVGFGGGHY-APRQTRIVLETDWAFGHIAADWQLGALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEALL 260 (451)
T ss_pred cCCCEEEEeCCCCc-chhHHHHhhcCCeeEEeeccccchhccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHHHH
Confidence 46789999999776 44444332221 000 0011 1 33444556789999999986654 6666666666
Q ss_pred HHH
Q 040415 162 DEW 164 (379)
Q Consensus 162 ~~l 164 (379)
+++
T Consensus 261 ~~l 263 (451)
T PRK14866 261 EEL 263 (451)
T ss_pred HHC
Confidence 654
No 105
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=40.80 E-value=97 Score=27.36 Aligned_cols=66 Identities=8% Similarity=-0.046 Sum_probs=41.4
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
+..+.+.|.|=|-|..|-. ....++++.+|+. +...-+++.+.... -.+..+.+.
T Consensus 78 i~~~~~~gad~I~~H~Ea~------~~~~~~l~~Ir~~-----------g~k~GlalnP~T~~--------~~i~~~l~~ 132 (223)
T PRK08745 78 VPDFADAGATTISFHPEAS------RHVHRTIQLIKSH-----------GCQAGLVLNPATPV--------DILDWVLPE 132 (223)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHC-----------CCceeEEeCCCCCH--------HHHHHHHhh
Confidence 3444456999999999831 2345566655553 34455555443332 135567789
Q ss_pred CcEEEeecccc
Q 040415 210 LDWINAMCFDY 220 (379)
Q Consensus 210 vD~v~lm~Yd~ 220 (379)
+|+|.+|+-+.
T Consensus 133 vD~VlvMtV~P 143 (223)
T PRK08745 133 LDLVLVMSVNP 143 (223)
T ss_pred cCEEEEEEECC
Confidence 99999999863
No 106
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=40.64 E-value=87 Score=23.08 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=42.6
Q ss_pred hhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC---------CcccchHHHHHHHHHHHHH
Q 040415 112 FVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN---------PKEMHDLGLLLDEWRLALE 169 (379)
Q Consensus 112 ~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~---------~~~~~~~~~fl~~l~~~l~ 169 (379)
...........+.....+...+++++++=--+|.|+..+ .+++-+|..|+++|...|+
T Consensus 14 ~~~~~~~~~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 14 IERLERLREREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 334344444556666777888889998877788777642 4678899999999999985
No 107
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=40.32 E-value=92 Score=29.31 Aligned_cols=47 Identities=6% Similarity=0.012 Sum_probs=25.8
Q ss_pred CCcEEEEEEEeeeCCCc----EEEe-CCcchHHHHHHHHHHhhcCCCCeEEEEE
Q 040415 54 LFTHIYYAFLMPNNVTY----KFNI-DNSTAIQLSNFTTTLHHKNPPVKTLFSI 102 (379)
Q Consensus 54 ~~t~ii~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi 102 (379)
.+--|+.....+.+.+. .+.+ .+..-..++++.+.+|+. |.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 34445555555554431 1222 233446778888888875 56777654
No 108
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.89 E-value=63 Score=30.48 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEeec
Q 040415 121 SRQAFIHSSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 121 ~r~~f~~~i~~~l~~~g~DGidiD~E 146 (379)
..+.|++.. ..+++.|||||+|.--
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a 171 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAA 171 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchh
Confidence 445566544 4677889999999854
No 109
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=39.72 E-value=31 Score=33.60 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=38.2
Q ss_pred hhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHH
Q 040415 114 DMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALE 169 (379)
Q Consensus 114 ~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~ 169 (379)
+.+++...|+..+..|++||.++|||| -|-..+.-.| ....|....+-|...++
T Consensus 98 Rplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~P-S~k~F~~IFK~LY~~lD 151 (622)
T COG5185 98 RPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQP-SQKGFIIIFKWLYLRLD 151 (622)
T ss_pred cccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcCC-ccccHHHHHHHHHhccC
Confidence 446788899999999999999999998 2222211122 23567777887777765
No 110
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=38.71 E-value=1.4e+02 Score=27.18 Aligned_cols=59 Identities=8% Similarity=0.142 Sum_probs=47.4
Q ss_pred HHHHhhcCCC-CeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 040415 86 TTTLHHKNPP-VKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLD 144 (379)
Q Consensus 86 ~~~lk~~~~~-~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD 144 (379)
+++++...+. ..+++.=-||..+...+.....+.+.++.|+++++.-|+..|+|=+.|.
T Consensus 221 ~e~vqsa~g~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~G~d~fvfe 280 (305)
T COG5309 221 LERVQSACGTKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSCGYDVFVFE 280 (305)
T ss_pred HHHHHHhcCCCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhccCccEEEee
Confidence 5566664444 6778888889877778888888999999999999999999998876553
No 111
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=38.24 E-value=1.2e+02 Score=29.17 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=46.4
Q ss_pred CcEEEEEEEeeeCCCc-----EEEe-CCcchHHHHHHHHHHhhcCCCCeEEEEE--cCCCCCC----------cc-----
Q 040415 55 FTHIYYAFLMPNNVTY-----KFNI-DNSTAIQLSNFTTTLHHKNPPVKTLFSI--GGAGADT----------SI----- 111 (379)
Q Consensus 55 ~t~ii~~~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~~----------~~----- 111 (379)
+.-||.....+.+.+. .+.+ .+..-..++++.+.+|++ +.|+++-+ +|..... +.
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 4445555555554431 1112 222446778888888875 67777655 3321100 00
Q ss_pred ------hhhhhCCH---HHHHHHHHHHHHHHHhcCCCEEEEeecC
Q 040415 112 ------FVDMASHP---RSRQAFIHSSIEVARKFGFDGLDLDWEF 147 (379)
Q Consensus 112 ------~~~~~~~~---~~r~~f~~~i~~~l~~~g~DGidiD~E~ 147 (379)
..+.++.+ +..+.|++.. ..+++-|||||+|.--.
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~aGfDgVEih~ah 173 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAA-LRARDAGFDIVYVYAAH 173 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccc
Confidence 00111111 3455666544 45566799999998654
No 112
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=38.13 E-value=89 Score=31.70 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCC
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQP 178 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~ 178 (379)
+++++++.+.|+|=.-|||..|......-.+...++.+.++++.....+|..
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~ 288 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSR 288 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 6789999999999999999998853222345555666667777666555543
No 113
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.94 E-value=1.1e+02 Score=26.81 Aligned_cols=66 Identities=14% Similarity=0.009 Sum_probs=41.9
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
+..+.+.|.|=|-+..|-. ....++++.+|+. +...-+++.+.... -.+..+.+.
T Consensus 74 i~~~~~~gad~i~~H~Ea~------~~~~~~l~~ik~~-----------g~k~GlalnP~Tp~--------~~i~~~l~~ 128 (220)
T PRK08883 74 IPDFAKAGASMITFHVEAS------EHVDRTLQLIKEH-----------GCQAGVVLNPATPL--------HHLEYIMDK 128 (220)
T ss_pred HHHHHHhCCCEEEEcccCc------ccHHHHHHHHHHc-----------CCcEEEEeCCCCCH--------HHHHHHHHh
Confidence 3444556999999999831 2345556555553 34455665543332 135677889
Q ss_pred CcEEEeecccc
Q 040415 210 LDWINAMCFDY 220 (379)
Q Consensus 210 vD~v~lm~Yd~ 220 (379)
+|+|.+|+-+-
T Consensus 129 ~D~vlvMtV~P 139 (220)
T PRK08883 129 VDLILLMSVNP 139 (220)
T ss_pred CCeEEEEEecC
Confidence 99999999763
No 114
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.87 E-value=1.7e+02 Score=27.43 Aligned_cols=41 Identities=20% Similarity=0.408 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 93 NPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 93 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
.....+.+.|+|.. .+. |+ ..+..+.++|+|+|||+.--|.
T Consensus 52 ~~e~p~~vQl~g~~--p~~-------------~~-~aA~~~~~~g~d~IDlN~GCP~ 92 (318)
T TIGR00742 52 PEESPVALQLGGSD--PND-------------LA-KCAKIAEKRGYDEINLNVGCPS 92 (318)
T ss_pred CCCCcEEEEEccCC--HHH-------------HH-HHHHHHHhCCCCEEEEECCCCH
Confidence 34556778888753 222 22 2355667789999999986554
No 115
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=37.65 E-value=60 Score=25.48 Aligned_cols=46 Identities=9% Similarity=0.127 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHH
Q 040415 126 IHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREA 172 (379)
Q Consensus 126 ~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~ 172 (379)
.+.+.++|++.|++.--+++++.+. .+.+.|.+.+++..+.+.+.|
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa-~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISA-AEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEeh-hhHHHHHHHHHHHHHHHHHhC
Confidence 4556777888899888888887765 778999999999998887654
No 116
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=37.56 E-value=90 Score=31.06 Aligned_cols=47 Identities=23% Similarity=0.356 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
.+++.|+.+.+.+..+++++|+||+-||--.-.. ..|++++++++++
T Consensus 206 ~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~-------~~f~~~~~~~~~~ 252 (479)
T PRK09441 206 RHPEVREELKYWAKWYMETTGFDGFRLDAVKHID-------AWFIKEWIEHVRE 252 (479)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCC-------HHHHHHHHHHHHH
Confidence 3678888888877777777999999999742221 2456666666654
No 117
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=37.21 E-value=60 Score=31.01 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=52.9
Q ss_pred HHHHHHhhcCCCCeEEEEEcCC----CCCCcchhhhhC-CHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC-CCcccchH
Q 040415 84 NFTTTLHHKNPPVKTLFSIGGA----GADTSIFVDMAS-HPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ-NPKEMHDL 157 (379)
Q Consensus 84 ~~~~~lk~~~~~~kvllsigg~----~~~~~~~~~~~~-~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~-~~~~~~~~ 157 (379)
..|.+.|. +||-|+-.|--. ..+.+-+..++. +++-.-.+++.+++..+-|||||--|+=|-.+ .+++.++.
T Consensus 131 DVIDaaHr--NGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M 208 (553)
T COG4724 131 DVIDAAHR--NGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKM 208 (553)
T ss_pred hhhhhhhc--CCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHH
Confidence 45556554 578777554110 111444555554 34445579999999999999999999988544 24556677
Q ss_pred HHHHHHHHHH
Q 040415 158 GLLLDEWRLA 167 (379)
Q Consensus 158 ~~fl~~l~~~ 167 (379)
.+|+.-+++.
T Consensus 209 ~~f~ly~ke~ 218 (553)
T COG4724 209 RQFMLYSKEY 218 (553)
T ss_pred HHHHHHHHhc
Confidence 7777766643
No 118
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.75 E-value=3.1e+02 Score=24.49 Aligned_cols=69 Identities=10% Similarity=0.141 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHH
Q 040415 81 QLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLL 160 (379)
Q Consensus 81 ~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~f 160 (379)
.+++.++.+|++ ++++ +.||+- |..+ ..+...+..++.+++.|||.|+|.--...- ..+...++
T Consensus 42 ~l~eki~la~~~--~V~v--~~GGtl-----~E~~-----~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i--~~~~~~rl 105 (237)
T TIGR03849 42 IVKEKIEMYKDY--GIKV--YPGGTL-----FEIA-----HSKGKFDEYLNECDELGFEAVEISDGSMEI--SLEERCNL 105 (237)
T ss_pred HHHHHHHHHHHc--CCeE--eCCccH-----HHHH-----HHhhhHHHHHHHHHHcCCCEEEEcCCccCC--CHHHHHHH
Confidence 456666556653 5555 557641 3332 234677778889999999999998543221 12334444
Q ss_pred HHHHH
Q 040415 161 LDEWR 165 (379)
Q Consensus 161 l~~l~ 165 (379)
|+..+
T Consensus 106 I~~~~ 110 (237)
T TIGR03849 106 IERAK 110 (237)
T ss_pred HHHHH
Confidence 54444
No 119
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=36.69 E-value=2.3e+02 Score=26.06 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=49.7
Q ss_pred EEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCC---CCCCcchhh-----------------hhCCHHHHHHHHHHHHH
Q 040415 72 FNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGA---GADTSIFVD-----------------MASHPRSRQAFIHSSIE 131 (379)
Q Consensus 72 ~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~---~~~~~~~~~-----------------~~~~~~~r~~f~~~i~~ 131 (379)
..+....-++..++++.||++ |+|+++.+--. ......+.. =..+++.++-+.+.+.+
T Consensus 66 ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 66 YSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred eEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHH
Confidence 444433334557888888875 78998876221 000111111 14578889889999999
Q ss_pred HHHhcCCCEEEEeecCC
Q 040415 132 VARKFGFDGLDLDWEFP 148 (379)
Q Consensus 132 ~l~~~g~DGidiD~E~~ 148 (379)
.+.+.|+||+=+|+-.+
T Consensus 144 ~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 144 PLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHhcCCcEEEecCCCC
Confidence 99999999999998433
No 120
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=36.61 E-value=63 Score=29.32 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.+++.|+.+++ ++++..++++||+-||--.... ..|+++++.+++..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~~-------~~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHIP-------KEFWKEFRDEVKEE 188 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGSS-------HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEccccccc-------hhhHHHHhhhhhhh
Confidence 45677888888 5555556679999999742221 17777777777764
No 121
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=36.50 E-value=2.9e+02 Score=25.31 Aligned_cols=75 Identities=9% Similarity=0.162 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHH
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLG 158 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~ 158 (379)
...+.++++-.|++ +|+|+|-.--... .... ...++ .+.+.+.+++.|..||-|||-. .+.+.-+
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~--~~~~------~~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~v 136 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETG--GNVA------NLEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQEMV 136 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHT--TBHH------HHHCC-HHHHHHHHHHCTEEEEEEE--S----STSHHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcc--hhhH------hHHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHHHH
Confidence 46678888888886 5777775432211 0111 12233 3888999999999999999963 3445555
Q ss_pred HHHHHHHHHH
Q 040415 159 LLLDEWRLAL 168 (379)
Q Consensus 159 ~fl~~l~~~l 168 (379)
++..++-+.-
T Consensus 137 ~~y~~i~~~A 146 (273)
T PF10566_consen 137 NWYEDILEDA 146 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 122
>PF15284 PAGK: Phage-encoded virulence factor
Probab=36.08 E-value=37 Score=23.05 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=12.4
Q ss_pred CcchhHHHHHHH-HHHHHHHHHhcCcccCCC
Q 040415 1 MASLHYVCSLLS-ILVCLITIAATGHITASP 30 (379)
Q Consensus 1 m~~~~~~~~l~~-l~~~~~~~~~~~~~~~~~ 30 (379)
||..+.+...++ .+.+..+.+..++..+..
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~~ 31 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSSP 31 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhCC
Confidence 555443333222 233334444445444443
No 123
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=35.71 E-value=97 Score=29.28 Aligned_cols=47 Identities=11% Similarity=-0.026 Sum_probs=29.1
Q ss_pred CCcEEEEEEEeeeCCCc----EEEeCC-cchHHHHHHHHHHhhcCCCCeEEEEE
Q 040415 54 LFTHIYYAFLMPNNVTY----KFNIDN-STAIQLSNFTTTLHHKNPPVKTLFSI 102 (379)
Q Consensus 54 ~~t~ii~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~lk~~~~~~kvllsi 102 (379)
.+--||.....+++.+. .+.+.+ ..-..++++.+.+|++ |.|+++=|
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL 100 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQL 100 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEE
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--Cccceeec
Confidence 45566766666776542 222322 2446778888888885 67888755
No 124
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=35.70 E-value=54 Score=31.44 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcCCCCCCcchh------------hhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 82 LSNFTTTLHHKNPPVKTLFSIGGAGADTSIFV------------DMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 82 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~------------~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
-+.+++++|++ ++..++++-.. +..|. ..--.++..+.|+.-|+++++.+.=.||.|++-.|.
T Consensus 106 QrwfL~~Ak~r--GV~~f~aFSNS---PP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~ 180 (384)
T PF14587_consen 106 QRWFLKAAKER--GVNIFEAFSNS---PPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPF 180 (384)
T ss_dssp HHHHHHHHHHT--T---EEEE-SS---S-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred HHHHHHHHHHc--CCCeEEEeecC---CCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCc
Confidence 34466666664 77777766331 11111 011234678899999988888887789999974332
Q ss_pred C--------------CcccchHHHHHHHHHHHHHHHH
Q 040415 150 N--------------PKEMHDLGLLLDEWRLALEREA 172 (379)
Q Consensus 150 ~--------------~~~~~~~~~fl~~l~~~l~~~~ 172 (379)
. +-+.+....||+.|+.+|.+.+
T Consensus 181 NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 181 NEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 1 1234557899999999999865
No 125
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=35.67 E-value=1.3e+02 Score=27.88 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCc
Q 040415 122 RQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKY 201 (379)
Q Consensus 122 r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~ 201 (379)
.+-|-.++..+++--..--+.|=+-...+.++.....+++++.++.|.+++..-. ....+-+-+..+.. .+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~-~~~~vG~MiEvPsa--------al 189 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFD-PDLPVGIMIEVPSA--------AL 189 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTG-TT-EEEEEE-SHHH--------HH
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCcc-ccceEEEEechhHH--------HH
Confidence 4557777766665543334444444444555566777888888888876542211 12333333322222 34
Q ss_pred ChhhhhhcCcEEEeeccccc
Q 040415 202 PVGSINRNLDWINAMCFDYH 221 (379)
Q Consensus 202 ~~~~l~~~vD~v~lm~Yd~~ 221 (379)
...++.+.+||+.+-+-|+.
T Consensus 190 ~~~~~~~~~DF~SIGtNDLt 209 (293)
T PF02896_consen 190 MADEFAKEVDFFSIGTNDLT 209 (293)
T ss_dssp THHHHHTTSSEEEEEHHHHH
T ss_pred HHHHHHHHCCEEEEChhHHH
Confidence 67789999999999999974
No 126
>PRK09505 malS alpha-amylase; Reviewed
Probab=35.59 E-value=50 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeec
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E 146 (379)
.+++.|+.+++.+..|++++|+||+-||--
T Consensus 434 ~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 434 DGYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 355888999999999999999999999973
No 127
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=35.26 E-value=3.1e+02 Score=25.89 Aligned_cols=80 Identities=11% Similarity=0.043 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-----Cccc
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-----PKEM 154 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-----~~~~ 154 (379)
.....+++.++....++.+.+|||+... ...+..-+.|++.+-.+ .. ..|.++|+.--|.. ..+.
T Consensus 119 ~G~~~~l~~i~~~~~~~~i~vsi~~~~~--------~~~~~~~~dy~~~~~~~-~~-~ad~iElNlScPn~~~~~~~~~~ 188 (335)
T TIGR01036 119 HGADVLVERLKRARYKGPIGINIGKNKD--------TPSEDAKEDYAACLRKL-GP-LADYLVVNVSSPNTPGLRDLQYK 188 (335)
T ss_pred hhHHHHHHHHhhccCCCcEEEEEeCCCC--------CCcccCHHHHHHHHHHH-hh-hCCEEEEEccCCCCCCcccccCH
Confidence 3445556566554456788899987531 01112333444444443 23 38999999876643 2344
Q ss_pred chHHHHHHHHHHHHH
Q 040415 155 HDLGLLLDEWRLALE 169 (379)
Q Consensus 155 ~~~~~fl~~l~~~l~ 169 (379)
+.+.++++.+++..+
T Consensus 189 ~~~~~i~~~V~~~~~ 203 (335)
T TIGR01036 189 AELRDLLTAVKQEQD 203 (335)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777777777665
No 128
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=35.23 E-value=1.1e+02 Score=28.77 Aligned_cols=41 Identities=17% Similarity=0.463 Sum_probs=27.0
Q ss_pred CCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 93 NPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 93 ~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
.....+.+.|+|.+ .+ .|++ .+..+++.|||||||+.--|.
T Consensus 62 ~~e~p~~vQl~g~~--p~-------------~~~~-aA~~~~~~g~d~IdlN~gCP~ 102 (333)
T PRK11815 62 PEEHPVALQLGGSD--PA-------------DLAE-AAKLAEDWGYDEINLNVGCPS 102 (333)
T ss_pred CCCCcEEEEEeCCC--HH-------------HHHH-HHHHHHhcCCCEEEEcCCCCH
Confidence 34456778888853 22 2232 455667789999999986554
No 129
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=34.93 E-value=59 Score=29.28 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=26.9
Q ss_pred EEEeecccccCCCCCCCCCCCcccCCCCCCccHHHHHHHHHH-cCCCCCCeee
Q 040415 212 WINAMCFDYHGGWDNTTTGAHAALYDPKSNLSTSYGLKSWLR-AGVHRSKLVM 263 (379)
Q Consensus 212 ~v~lm~Yd~~~~~~~~~~~~~spl~~~~~~~~i~~~v~~~~~-~gv~~~Kl~l 263 (379)
.+++|+|||.|.-. .+|-++... -...++.+.+.+.. .| ++++|+|
T Consensus 88 n~nv~~~DYSGyG~--S~G~psE~n---~y~Di~avye~Lr~~~g-~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGR--SSGKPSERN---LYADIKAVYEWLRNRYG-SPERIIL 134 (258)
T ss_pred cceEEEEecccccc--cCCCccccc---chhhHHHHHHHHHhhcC-CCceEEE
Confidence 68999999987533 334333331 01246666555554 44 7777765
No 130
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.47 E-value=1.7e+02 Score=27.24 Aligned_cols=41 Identities=12% Similarity=0.278 Sum_probs=26.6
Q ss_pred cCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 92 KNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 92 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
...+..+.+.|+|.. .+ .|++ .+..+++.|+|||||+.--|
T Consensus 59 ~~~~~p~i~ql~g~~--~~-------------~~~~-aa~~~~~~G~d~IelN~gcP 99 (319)
T TIGR00737 59 AEDETPISVQLFGSD--PD-------------TMAE-AAKINEELGADIIDINMGCP 99 (319)
T ss_pred CCccceEEEEEeCCC--HH-------------HHHH-HHHHHHhCCCCEEEEECCCC
Confidence 334566778888853 22 2222 34466778999999998655
No 131
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=34.10 E-value=1.5e+02 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCC
Q 040415 96 VKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQ 149 (379)
Q Consensus 96 ~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~ 149 (379)
..+.+.|.|.+ .+ .|++. +..+.+.|+|||||+.--|.
T Consensus 63 ~p~~vQl~g~~--p~-------------~~~~a-A~~~~~~g~d~IdiN~GCP~ 100 (312)
T PRK10550 63 TLVRIQLLGQY--PQ-------------WLAEN-AARAVELGSWGVDLNCGCPS 100 (312)
T ss_pred CcEEEEeccCC--HH-------------HHHHH-HHHHHHcCCCEEEEeCCCCc
Confidence 45777887742 12 33332 33456679999999987664
No 132
>PRK10397 lipoprotein; Provisional
Probab=33.96 E-value=93 Score=24.65 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=24.2
Q ss_pred CCCCeEEEEecCCCCCCCCCCCCCCCCcEEEEEEEeeeCCCcEEEeC
Q 040415 29 SPPPVKAAYWPSWAESFPPSAINTNLFTHIYYAFLMPNNVTYKFNID 75 (379)
Q Consensus 29 ~~~~~~~gy~~~w~~~~~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~ 75 (379)
|.+.-..|||.+- +.+ ..+.+-...+.+.++.+|..+.=.
T Consensus 29 PaPa~l~GyWqs~-gpq------~~lvSp~AiaSLivt~~GdtldCr 68 (137)
T PRK10397 29 PAPAGLAGYWQTK-GPQ------RALVSPEAIASLIVTKEGDTLDCR 68 (137)
T ss_pred CCCccccceeecc-CCc------ccccCccceEEEEEecCCCEEeeh
Confidence 4455668999862 221 245556666677788777566543
No 133
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=32.96 E-value=50 Score=29.76 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEEcC
Q 040415 80 IQLSNFTTTLHHKNPPVKTLFSIGG 104 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvllsigg 104 (379)
..+..+++.+++.||.+||+++|--
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSP 176 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSP 176 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEecc
Confidence 4567778899999999999999843
No 134
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=32.95 E-value=98 Score=31.37 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEee-cCCC----C-CcccchHHHHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDW-EFPQ----N-PKEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~-E~~~----~-~~~~~~~~~fl~~l~~~l~~~ 171 (379)
.+++.|+.+++.+..+++ .|+||+-+|- .+.. . ..+...-..|++++++.+++.
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 467888888888888886 8999999994 3221 0 011112346888888888753
No 135
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=32.62 E-value=2.3e+02 Score=24.91 Aligned_cols=65 Identities=12% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
+...-+.|.|-|-+..|- .....+.++.+|+. +....+++.|.... -.+..+.+.
T Consensus 77 i~~fa~agad~It~H~E~------~~~~~r~i~~Ik~~-----------G~kaGv~lnP~Tp~--------~~i~~~l~~ 131 (220)
T COG0036 77 IEAFAKAGADIITFHAEA------TEHIHRTIQLIKEL-----------GVKAGLVLNPATPL--------EALEPVLDD 131 (220)
T ss_pred HHHHHHhCCCEEEEEecc------CcCHHHHHHHHHHc-----------CCeEEEEECCCCCH--------HHHHHHHhh
Confidence 344445689999999991 13344455555543 24455555432222 135566788
Q ss_pred CcEEEeeccc
Q 040415 210 LDWINAMCFD 219 (379)
Q Consensus 210 vD~v~lm~Yd 219 (379)
+|+|.+|+-+
T Consensus 132 vD~VllMsVn 141 (220)
T COG0036 132 VDLVLLMSVN 141 (220)
T ss_pred CCEEEEEeEC
Confidence 9999999975
No 136
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=32.35 E-value=3.5e+02 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcC-CCEEEEeec
Q 040415 82 LSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFG-FDGLDLDWE 146 (379)
Q Consensus 82 ~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g-~DGidiD~E 146 (379)
+....+.+|+..|++|+++. +.+. ......++.+.+-+-.+.+... +|||-+-+-
T Consensus 105 i~~af~~ar~~~P~a~l~~N--dy~~--------~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H 160 (254)
T smart00633 105 IEKAFRYAREADPDAKLFYN--DYNT--------EEPNAKRQAIYELVKKLKAKGVPIDGIGLQSH 160 (254)
T ss_pred HHHHHHHHHHhCCCCEEEEe--ccCC--------cCccHHHHHHHHHHHHHHHCCCccceeeeeee
Confidence 33444578888999999884 2111 0111445555554444444433 799988653
No 137
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=31.59 E-value=3.8e+02 Score=27.29 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcC-CCCeEEEEeecccccccccccc
Q 040415 120 RSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATC-QPPLLFTAAVYFSVDFFVADVY 198 (379)
Q Consensus 120 ~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~-~~~~~ls~a~~~~~~~~~~~~~ 198 (379)
+..+-|-.++-.+++--.+-.+-|=|-...+-++......++++.+..|+.++..-. +-.+-+.+-+|. .
T Consensus 366 ~~~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPs--A------- 436 (574)
T COG1080 366 ERPEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPS--A------- 436 (574)
T ss_pred ccHHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhH--H-------
Confidence 455678899999999877877777776555545556677777777778877654332 112223333332 1
Q ss_pred CCcChhhhhhcCcEEEeeccccc
Q 040415 199 RKYPVGSINRNLDWINAMCFDYH 221 (379)
Q Consensus 199 ~~~~~~~l~~~vD~v~lm~Yd~~ 221 (379)
.+-...+++.|||+.+-|-|+.
T Consensus 437 -a~~a~~lakevDFfSIGTNDLt 458 (574)
T COG1080 437 -ALIADQLAKEVDFFSIGTNDLT 458 (574)
T ss_pred -HHHHHHHHHhCCEeeecccHHH
Confidence 2346788999999999999975
No 138
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=31.36 E-value=1.1e+02 Score=27.69 Aligned_cols=45 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCccc-chHHHHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNPKEM-HDLGLLLDEWRLALERE 171 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~~~~-~~~~~fl~~l~~~l~~~ 171 (379)
...++.+++.|||||+|....+...-+. .....-++++++.+.+.
T Consensus 19 ~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (279)
T TIGR00542 19 LERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIET 64 (279)
T ss_pred HHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHc
Confidence 3457889999999999976432210011 11245677788888763
No 139
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=31.24 E-value=2.5e+02 Score=26.21 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecC
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEF 147 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~ 147 (379)
.|++.|+=|.+.+..+ .+.|+||+=+|+-.
T Consensus 135 tnp~a~~w~~~~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 135 FDPAAQAWFHDNYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred CCHHHHHHHHHHHHHh-hhCCccEEEecCCC
Confidence 5888888887776654 77899999999943
No 140
>PRK13840 sucrose phosphorylase; Provisional
Probab=30.88 E-value=1.6e+02 Score=29.42 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=36.3
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEee-----cCCCCC-cccchHHHHHHHHHHHHHH
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDW-----EFPQNP-KEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~-----E~~~~~-~~~~~~~~fl~~l~~~l~~ 170 (379)
..||+.++.+.+.+.-++ +.|.||+-||- +.+++. .....--.|++++|+.++.
T Consensus 166 ~~NP~V~~~i~~il~fwl-~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~ 225 (495)
T PRK13840 166 VHSAAGWEYLMSILDRFA-ASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARA 225 (495)
T ss_pred CCCHHHHHHHHHHHHHHH-HCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhh
Confidence 568888888887665555 56999999993 333321 1123345688888888764
No 141
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=30.62 E-value=2.9e+02 Score=22.55 Aligned_cols=65 Identities=14% Similarity=0.051 Sum_probs=41.1
Q ss_pred chHHHHHHHHHHhhcCCCCeEEE-EEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEee
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLF-SIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDW 145 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvll-sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~ 145 (379)
....+.++++.++++.|+++|++ ++--... .. . ......+.++++.+.+.++.+++++.=||+.-
T Consensus 73 ~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~-~~-~-~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~~ 138 (174)
T cd01841 73 FIKWYRDIIEQIREEFPNTKIYLLSVLPVLE-ED-E-IKTRSNTRIQRLNDAIKELAPELGVTFIDLND 138 (174)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEeeCCcCc-cc-c-cccCCHHHHHHHHHHHHHHHHHCCCEEEEcHH
Confidence 35667888888998889998775 3321111 10 0 01122356778888888888998876666553
No 142
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=28.76 E-value=2.7e+02 Score=26.07 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=43.0
Q ss_pred HHHHHHHhhcC-CCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-----Ccccch
Q 040415 83 SNFTTTLHHKN-PPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-----PKEMHD 156 (379)
Q Consensus 83 ~~~~~~lk~~~-~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-----~~~~~~ 156 (379)
..+++.+++.. .+.-+++||+|... .. -++.-+.|++.+-.. .. ..|+++|++--|.. ..+.+.
T Consensus 115 ~~~~~~l~~~~~~~~plivsi~g~~~--~~------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~ 184 (327)
T cd04738 115 DAVAKRLKKRRPRGGPLGVNIGKNKD--TP------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEA 184 (327)
T ss_pred HHHHHHHHHhccCCCeEEEEEeCCCC--Cc------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHH
Confidence 34444444432 46778899988642 10 112233344433332 22 38999999965543 133456
Q ss_pred HHHHHHHHHHHHH
Q 040415 157 LGLLLDEWRLALE 169 (379)
Q Consensus 157 ~~~fl~~l~~~l~ 169 (379)
+.++++++|+...
T Consensus 185 ~~~iv~av~~~~~ 197 (327)
T cd04738 185 LRELLTAVKEERN 197 (327)
T ss_pred HHHHHHHHHHHHh
Confidence 6777777777764
No 143
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=28.62 E-value=75 Score=22.81 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=25.7
Q ss_pred chhhhhCCHHHHHHHHHHHHHHHHhcCCC
Q 040415 111 IFVDMASHPRSRQAFIHSSIEVARKFGFD 139 (379)
Q Consensus 111 ~~~~~~~~~~~r~~f~~~i~~~l~~~g~D 139 (379)
.|.....+++.|++|.++=-.++++||+.
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 45677889999999999999999999885
No 144
>PF06316 Ail_Lom: Enterobacterial Ail/Lom protein; InterPro: IPR000758 Virulence-related outer membrane proteins are expressed in Gram-negative bacteria and are essential to bacterial survival within macrophages and for eukaryotic cell invasion. Members of this group include: PagC, required by Salmonella typhimurium for survival in macrophages and for virulence in mice [] Rck outer membrane protein of the S. typhimurium virulence plasmid [] Ail, a product of the Yersinia enterocolitica chromosome capable of mediating bacterial adherence to and invasion of epithelial cell lines [] OmpX from Escherichia coli that promotes adhesion to and entry into mammalian cells. It also has a role in the resistance against attack by the human complement system [] a Bacteriophage lambda outer membrane protein, Lom [] The crystal structure of OmpX from E. coli reveals that OmpX consists of an eight-stranded antiparallel all-next-neighbour beta barrel []. The structure shows two girdles of aromatic amino acid residues and a ribbon of nonpolar residues that attach to the membrane interior. The core of the barrel consists of an extended hydrogen-bonding network of highly conserved residues. OmpX thus resembles an inverse micelle. The OmpX structure shows that the membrane-spanning part of the protein is much better conserved than the extracellular loops. Moreover, these loops form a protruding beta sheet, the edge of which presumably binds to external proteins. It is suggested that this type of binding promotes cell adhesion and invasion and helps defend against the complement system. Although OmpX has the same beta-sheet topology as the structurally related outer membrane protein A (OmpA) IPR000498 from INTERPRO, their barrels differ with respect to the shear numbers and internal hydrogen-bonding networks.; GO: 0009279 cell outer membrane
Probab=28.46 E-value=53 Score=28.30 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHH-HHHHhcCcccCCCCCeEEEEecC
Q 040415 4 LHYVCSLLSILVCL-ITIAATGHITASPPPVKAAYWPS 40 (379)
Q Consensus 4 ~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~gy~~~ 40 (379)
||++|..++.+.++ ..++.+..+...+....+||-..
T Consensus 1 mr~~~~~ils~~~~l~~~~~pA~a~~~~~tlS~GYaq~ 38 (199)
T PF06316_consen 1 MRKLCAAILSAAVLLAVSGLPASAAAHQSTLSVGYAQS 38 (199)
T ss_pred ChhHHHHHHHHHHHHHHhcchhhhhcccceeccceeEE
Confidence 56677777654443 33333333333334556888865
No 145
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.45 E-value=5e+02 Score=24.55 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCC--------H----HH-HHHHHHHHHHHHHhcCCCEEEEe
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASH--------P----RS-RQAFIHSSIEVARKFGFDGLDLD 144 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~--------~----~~-r~~f~~~i~~~l~~~g~DGidiD 144 (379)
..+.+.++.+++|++ |+|+-+-...+......+..-... + +. .+....++..++.+|..|.+=+|
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 345677788888886 788876554432111111111100 1 11 22556788899999999999999
Q ss_pred ecCCCCCcccchHHHHHHHHHH
Q 040415 145 WEFPQNPKEMHDLGLLLDEWRL 166 (379)
Q Consensus 145 ~E~~~~~~~~~~~~~fl~~l~~ 166 (379)
.-.+.. .+...+..+...+|+
T Consensus 214 g~~~~~-~~~~~~~~~~~~i~~ 234 (346)
T PF01120_consen 214 GGWPDP-DEDWDSAELYNWIRK 234 (346)
T ss_dssp STTSCC-CTHHHHHHHHHHHHH
T ss_pred CCCCcc-ccccCHHHHHHHHHH
Confidence 876542 233344444444444
No 146
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=28.29 E-value=94 Score=20.75 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCEE-EEeecCCCCCcccchHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGL-DLDWEFPQNPKEMHDLGLLLDEWRLA 167 (379)
Q Consensus 127 ~~i~~~l~~~g~DGi-diD~E~~~~~~~~~~~~~fl~~l~~~ 167 (379)
+.+++-|+..|+||. .|.||-+.- +....+.+=++-||..
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-~~~~G~~~a~~~lr~~ 43 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-DPEEGAREAAAFLRKL 43 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-SHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-CHHHHHHHHHHHHHHh
Confidence 357888999999995 788885542 2334444444444443
No 147
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=27.89 E-value=3.1e+02 Score=25.33 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=22.0
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCCEEEEeec
Q 040415 116 ASHPRSRQAFIHSSIEVARKFGFDGLDLDWE 146 (379)
Q Consensus 116 ~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E 146 (379)
+.+++.|+-+.+.+- .+.+.|+||+-+|+-
T Consensus 129 ftnp~a~~w~~~~~~-~~~~~Gid~~~~D~~ 158 (308)
T cd06593 129 FTNPDACKWYKDKLK-PLLDMGVDCFKTDFG 158 (308)
T ss_pred CCCHHHHHHHHHHHH-HHHHhCCcEEecCCC
Confidence 457788876665554 555689999999984
No 148
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=27.78 E-value=3e+02 Score=23.01 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHh----------------cCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 040415 119 PRSRQAFIHSSIEVARK----------------FGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLF 182 (379)
Q Consensus 119 ~~~r~~f~~~i~~~l~~----------------~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~l 182 (379)
.+...++++.+.+++++ .++|||++..+... ..+.|..+. ++.++
T Consensus 38 ~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~~~~~-----------~~~~r~~~~--------~~~~i 98 (180)
T PF02581_consen 38 DEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQSDLP-----------PAEARKLLG--------PDKII 98 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBTTSSS-----------HHHHHHHHT--------TTSEE
T ss_pred ccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecccccc-----------hHHhhhhcc--------cceEE
Confidence 35555666666655554 56999999885321 334455553 24677
Q ss_pred EEeeccccccccccccCCcChhhhh-hcCcEEEeecc
Q 040415 183 TAAVYFSVDFFVADVYRKYPVGSIN-RNLDWINAMCF 218 (379)
Q Consensus 183 s~a~~~~~~~~~~~~~~~~~~~~l~-~~vD~v~lm~Y 218 (379)
++++..... ..+.. .-+||+.+-..
T Consensus 99 g~S~h~~~e-----------~~~a~~~g~dYv~~gpv 124 (180)
T PF02581_consen 99 GASCHSLEE-----------AREAEELGADYVFLGPV 124 (180)
T ss_dssp EEEESSHHH-----------HHHHHHCTTSEEEEETS
T ss_pred EeecCcHHH-----------HHHhhhcCCCEEEECCc
Confidence 777642222 22222 45899988753
No 149
>PLN02334 ribulose-phosphate 3-epimerase
Probab=27.67 E-value=2.7e+02 Score=24.47 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=38.3
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhh
Q 040415 129 SIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR 208 (379)
Q Consensus 129 i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (379)
.++.+.+.|.|||-+..|. . ........++.++. .+..+-+++.+.... -....+.+
T Consensus 80 ~~~~~~~~gad~v~vH~~q-~---~~d~~~~~~~~i~~-----------~g~~iGls~~~~t~~--------~~~~~~~~ 136 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQ-A---STIHLHRLIQQIKS-----------AGMKAGVVLNPGTPV--------EAVEPVVE 136 (229)
T ss_pred HHHHHHHcCCCEEEEeecc-c---cchhHHHHHHHHHH-----------CCCeEEEEECCCCCH--------HHHHHHHh
Confidence 3555677899999888884 1 11223344443332 134555555432111 12345556
Q ss_pred c--CcEEEeeccc
Q 040415 209 N--LDWINAMCFD 219 (379)
Q Consensus 209 ~--vD~v~lm~Yd 219 (379)
. +|||.+|+..
T Consensus 137 ~~~~Dyi~~~~v~ 149 (229)
T PLN02334 137 KGLVDMVLVMSVE 149 (229)
T ss_pred ccCCCEEEEEEEe
Confidence 7 9999999874
No 150
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=27.31 E-value=5.3e+02 Score=24.30 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=36.9
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEE--cCCCCCC--------c-------chhhhhCCH---HHHHHHHHHHHHHHHhcC
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSI--GGAGADT--------S-------IFVDMASHP---RSRQAFIHSSIEVARKFG 137 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsi--gg~~~~~--------~-------~~~~~~~~~---~~r~~f~~~i~~~l~~~g 137 (379)
.-..++++.+.+|++ +.++++-+ +|..... . ...+.++.+ +..+.|++.. ..+++-|
T Consensus 79 ~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aG 155 (337)
T PRK13523 79 HIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAG 155 (337)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcC
Confidence 446778888888875 67777665 2321100 0 000111111 3445566544 5556679
Q ss_pred CCEEEEeec
Q 040415 138 FDGLDLDWE 146 (379)
Q Consensus 138 ~DGidiD~E 146 (379)
||||+|.--
T Consensus 156 fDgVeih~a 164 (337)
T PRK13523 156 FDVIEIHGA 164 (337)
T ss_pred CCEEEEccc
Confidence 999999864
No 151
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.28 E-value=3.1e+02 Score=22.25 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEE-EcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFS-IGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDL 143 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvlls-igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidi 143 (379)
...+.++++.+++++|+++|++. +--. . ............+-+.+.++.+++++.=||+
T Consensus 71 ~~~l~~li~~~~~~~~~~~vi~~~~~p~---~---~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~ 130 (169)
T cd01828 71 VANYRTILEKLRKHFPNIKIVVQSILPV---G---ELKSIPNEQIEELNRQLAQLAQQEGVTFLDL 130 (169)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCCc---C---ccCcCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 45667777778887788887763 2110 0 0111223455666666777777777655544
No 152
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.23 E-value=4.6e+02 Score=23.57 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhh
Q 040415 129 SIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR 208 (379)
Q Consensus 129 i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (379)
.++.+.+-|.||+-|-.+-+ +. ..++.+.+++ .++.+...+.+.... -.+..+.+
T Consensus 107 f~~~~~~aGvdgviipDlp~------ee----~~~~~~~~~~-------~gl~~i~lv~P~T~~--------eri~~i~~ 161 (256)
T TIGR00262 107 FYAKCKEVGVDGVLVADLPL------EE----SGDLVEAAKK-------HGVKPIFLVAPNADD--------ERLKQIAE 161 (256)
T ss_pred HHHHHHHcCCCEEEECCCCh------HH----HHHHHHHHHH-------CCCcEEEEECCCCCH--------HHHHHHHH
Confidence 45566788999999987621 11 2333333333 133333333332221 13567777
Q ss_pred cCc-EEEeecc
Q 040415 209 NLD-WINAMCF 218 (379)
Q Consensus 209 ~vD-~v~lm~Y 218 (379)
.+| ++.+|+.
T Consensus 162 ~~~gfiy~vs~ 172 (256)
T TIGR00262 162 KSQGFVYLVSR 172 (256)
T ss_pred hCCCCEEEEEC
Confidence 888 9999885
No 153
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.16 E-value=1.7e+02 Score=26.12 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 126 IHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 126 ~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
....++.+++.|||||+|-.. .. . -++++++.+++
T Consensus 17 l~~~l~~~a~~Gf~~VEl~~~--~~-~-------~~~~~~~~l~~ 51 (258)
T PRK09997 17 FLARFEKAAQCGFRGVEFMFP--YD-Y-------DIEELKQVLAS 51 (258)
T ss_pred HHHHHHHHHHhCCCEEEEcCC--CC-C-------CHHHHHHHHHH
Confidence 344688899999999999542 11 1 27777877776
No 154
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=27.02 E-value=2.6e+02 Score=29.41 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC--CcccchHHHHHHHHHHHHHHHHHhcC
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN--PKEMHDLGLLLDEWRLALEREAKATC 176 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~--~~~~~~~~~fl~~l~~~l~~~~~~~~ 176 (379)
-+|+...+|-+.+-++|..-|+|||-+|-+.... ..+...-.+|.+...+++.+.-..+.
T Consensus 358 v~P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~~~~ggrv~l~~ay~~ALe~S~~r~F 419 (750)
T PLN02684 358 VNPKKVYKFYNELHSYLADAGIDGVKVDVQCILETLGAGLGGRVELTRQYHQALDASVARNF 419 (750)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhhcccCcHHHHHHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999999765221 12345566777777777776443333
No 155
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=27.00 E-value=3.3e+02 Score=26.25 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=49.2
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhh-------hhCCHHHHHHH---HHHHHHHHHhcCCCEEEEeecC
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVD-------MASHPRSRQAF---IHSSIEVARKFGFDGLDLDWEF 147 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~-------~~~~~~~r~~f---~~~i~~~l~~~g~DGidiD~E~ 147 (379)
..+.+.++.+++|++ |+|+-+....+......+.. -...+...+-+ ..+|..+|.+||=|.+=+|...
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 446677888888886 78887755432211111211 01112223333 6899999999999999999876
Q ss_pred CCCCcccchHHHHHHHHHH
Q 040415 148 PQNPKEMHDLGLLLDEWRL 166 (379)
Q Consensus 148 ~~~~~~~~~~~~fl~~l~~ 166 (379)
+.. .+.....+|++.+|+
T Consensus 204 ~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 204 EAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCc-cchhcHHHHHHHHHH
Confidence 543 222234444444443
No 156
>PRK09989 hypothetical protein; Provisional
Probab=26.30 E-value=1.7e+02 Score=26.10 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
...++.+++.|||||+|-..+.. -.+++++.+++
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~----------~~~~~~~~l~~ 51 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDY----------STLQIQKQLEQ 51 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccC----------CHHHHHHHHHH
Confidence 35678899999999999653211 15677777776
No 157
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.93 E-value=3.4e+02 Score=22.39 Aligned_cols=63 Identities=8% Similarity=-0.011 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDL 143 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidi 143 (379)
...+.++++.+++++|+.++++.---... ..... ...+....+.+.+.+.++.+++++.=||+
T Consensus 92 ~~~l~~li~~i~~~~~~~~iil~t~~p~~-~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 92 KKDYETMIDSFQALPSKPKIYICYPIPAY-YGDGG-FINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEeCCccc-ccCCC-ccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 35678888889988899988764211000 11110 12334455667777788888888765554
No 158
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=25.51 E-value=3.3e+02 Score=24.65 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCCEEEEe--ecCCCC---CcccchHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLD--WEFPQN---PKEMHDLGLLLDEWRLAL 168 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD--~E~~~~---~~~~~~~~~fl~~l~~~l 168 (379)
+|+.++++. .||+++. +|.++. +-|.+...+|++.++..+
T Consensus 212 eNv~e~l~~--adGviVgS~~K~~G~~~n~~D~~rV~~Fm~~v~~~~ 256 (257)
T TIGR00259 212 ENVEELLSI--ADGVIVATTIKKDGVFNNFVDQARVSQFVEKVAHGL 256 (257)
T ss_pred HHHHHHHhh--CCEEEECCCcccCCccCCCcCHHHHHHHHHHHHHhc
Confidence 345555553 9999998 454442 356677888888877654
No 159
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=25.34 E-value=69 Score=26.78 Aligned_cols=32 Identities=13% Similarity=0.288 Sum_probs=29.0
Q ss_pred CcchhhhhCCHHHHHHHHHHHHHHHHhcCCCE
Q 040415 109 TSIFVDMASHPRSRQAFIHSSIEVARKFGFDG 140 (379)
Q Consensus 109 ~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DG 140 (379)
...|.+++.+.+..++-|+++++-|++-|+++
T Consensus 43 g~mfnqLl~s~kitKtaI~~aLr~mkKsGi~k 74 (176)
T PF06576_consen 43 GNMFNQLLASKKITKTAINEALRRMKKSGISK 74 (176)
T ss_pred hhHHHHHHhcccccHHHHHHHHHHHHHhcCCc
Confidence 56799999999999999999999999988864
No 160
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=25.19 E-value=1.5e+02 Score=24.72 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCC
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFP 148 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~ 148 (379)
.+++..++++.+-+..|-+-|..|+.|-+|-|
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp 176 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP 176 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEeCH
Confidence 45678888999999999999999999999943
No 161
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=25.14 E-value=95 Score=31.10 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCCeEEEEE---cCCCCCCc-----chhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-Cc-
Q 040415 83 SNFTTTLHHKNPPVKTLFSI---GGAGADTS-----IFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-PK- 152 (379)
Q Consensus 83 ~~~~~~lk~~~~~~kvllsi---gg~~~~~~-----~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-~~- 152 (379)
..+++++++.+|++|++.|- =+|-.... ....-...++.++.+++-+++|++.|.=-||+|+---+.. |.
T Consensus 156 ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~ 235 (496)
T PF02055_consen 156 IPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPDN 235 (496)
T ss_dssp HHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCCG
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCCC
Confidence 46777888888999999874 11110000 1111111346789999999999999998899888532211 11
Q ss_pred -------------ccchHHHHHHH-HHHHHHHH
Q 040415 153 -------------EMHDLGLLLDE-WRLALERE 171 (379)
Q Consensus 153 -------------~~~~~~~fl~~-l~~~l~~~ 171 (379)
..+....||+. |+-+|++.
T Consensus 236 ~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~ 268 (496)
T PF02055_consen 236 GSDPNYPWPSMGWTPEEQADFIKNYLGPALRKA 268 (496)
T ss_dssp GGSTT-SSC--B--HHHHHHHHHHTHHHHHHTS
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 12335678876 88888763
No 162
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=25.00 E-value=3.8e+02 Score=25.25 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=43.5
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCCCCeEEEEE------cCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 040415 71 KFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSI------GGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLD 144 (379)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsi------gg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD 144 (379)
...+....-++-.+++++||++ ++|+++.+ |..-.....|-. ..+++.|+=+.+ ..+.+.+.|+||+=+|
T Consensus 55 ~Ft~d~~~FPdp~~mv~~L~~~--G~klv~~i~P~i~~g~~~~~~~~~pD-ftnp~ar~wW~~-~~~~l~~~Gv~~~W~D 130 (332)
T cd06601 55 TFTTNGGGFPNPKEMFDNLHNK--GLKCSTNITPVISYGGGLGSPGLYPD-LGRPDVREWWGN-QYKYLFDIGLEFVWQD 130 (332)
T ss_pred ceeecCCCCCCHHHHHHHHHHC--CCeEEEEecCceecCccCCCCceeeC-CCCHHHHHHHHH-HHHHHHhCCCceeecC
Confidence 3444333323346788888874 67776643 211111334444 357888886644 4555666799999999
Q ss_pred ecCC
Q 040415 145 WEFP 148 (379)
Q Consensus 145 ~E~~ 148 (379)
.-.|
T Consensus 131 mnEp 134 (332)
T cd06601 131 MTTP 134 (332)
T ss_pred CCCc
Confidence 7444
No 163
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=24.10 E-value=5e+02 Score=25.61 Aligned_cols=98 Identities=21% Similarity=0.386 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcC---CCCCCeeeeccccccceeccCCCCCCCCCCCCCCCCCCCccccHHHHHHhhhcC-CcEEEEecCc
Q 040415 244 TSYGLKSWLRAG---VHRSKLVMGLPLYGRSWKLKDPNSHEIGSPAVDVGPGDKGLMQFVQVGEFNRMN-GATVVYDVES 319 (379)
Q Consensus 244 i~~~v~~~~~~g---v~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~~~~~-~~~~~~d~~~ 319 (379)
|+..++.|...+ -|...|++|-|--|.+|. .|..--+++.+.-.+. ....++= .
T Consensus 108 Vk~~l~~W~~~~~~~~~~p~vlIGTPGIGKS~~--------------------~GS~LLyqLLHy~~~~L~vVaYfv--~ 165 (439)
T PF07999_consen 108 VKRDLDRWLSGRGERDPRPFVLIGTPGIGKSFG--------------------TGSYLLYQLLHYDAEKLPVVAYFV--G 165 (439)
T ss_pred HHHHHHHHhccCCCCCCCceEEEecCCcCcccc--------------------chhhhhhhhhcCChhhccEEEEEE--e
Confidence 788899998632 255679999999998874 2333333444422111 1112221 1
Q ss_pred eeEEEEe--CC----EEEEECCHHHHHHHHHHHHHcCCceEEEeeccCCC
Q 040415 320 VSAYSFA--GS----TWIGYDDEISATIKIGFAQALGLRGYFFWALSYDN 363 (379)
Q Consensus 320 ~~~y~~~--~~----~~i~y~d~~Sl~~K~~~~~~~gl~Gv~iW~l~~Dd 363 (379)
...|.++ ++ +-+.|.+....-..++-....|..|..|.+++.+.
T Consensus 166 ~~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~~~ 215 (439)
T PF07999_consen 166 GEAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAKKG 215 (439)
T ss_pred ceEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEeccccc
Confidence 2455552 22 56889887777777776667889999999998874
No 164
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=24.03 E-value=2.8e+02 Score=25.81 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-----------Ccccch
Q 040415 88 TLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-----------PKEMHD 156 (379)
Q Consensus 88 ~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-----------~~~~~~ 156 (379)
.+.......++.+=|+|.. + ......+..+...++|||||+.-=|.. -.+.+.
T Consensus 46 ~~~~~~~~~p~~~Ql~g~~------------~----~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~ 109 (309)
T PF01207_consen 46 LLPFLPNERPLIVQLFGND------------P----EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDL 109 (309)
T ss_dssp HS-GCC-T-TEEEEEE-S-------------H----HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHH
T ss_pred cccccccccceeEEEeecc------------H----HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHH
Confidence 4444444456777777742 2 122233556667899999999875542 124456
Q ss_pred HHHHHHHHHHHH
Q 040415 157 LGLLLDEWRLAL 168 (379)
Q Consensus 157 ~~~fl~~l~~~l 168 (379)
..++|+++++.+
T Consensus 110 ~~~iv~~~~~~~ 121 (309)
T PF01207_consen 110 LAEIVKAVRKAV 121 (309)
T ss_dssp HHHHHHHHHHH-
T ss_pred hhHHHHhhhccc
Confidence 677777777765
No 165
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=24.01 E-value=4.8e+02 Score=23.90 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhc--CCCEEEEeecCCCCC-------cccchHHHHHHHHH
Q 040415 95 PVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKF--GFDGLDLDWEFPQNP-------KEMHDLGLLLDEWR 165 (379)
Q Consensus 95 ~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~--g~DGidiD~E~~~~~-------~~~~~~~~fl~~l~ 165 (379)
+..++++|.|.+ .+ .+ ..+++.+.+. ++|+|||++--|... .+.+...++++++|
T Consensus 90 ~~pl~~qi~g~~--~~-------------~~-~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr 153 (300)
T TIGR01037 90 PTPLIASVYGSS--VE-------------EF-AEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVK 153 (300)
T ss_pred CCcEEEEeecCC--HH-------------HH-HHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHH
Confidence 456889997742 11 22 2344455543 499999998766531 12234445555555
Q ss_pred HH
Q 040415 166 LA 167 (379)
Q Consensus 166 ~~ 167 (379)
+.
T Consensus 154 ~~ 155 (300)
T TIGR01037 154 DK 155 (300)
T ss_pred Hh
Confidence 44
No 166
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=23.93 E-value=1.2e+02 Score=26.28 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCCeEEEEEcCCCC-C--CcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEe
Q 040415 83 SNFTTTLHHKNPPVKTLFSIGGAGA-D--TSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLD 144 (379)
Q Consensus 83 ~~~~~~lk~~~~~~kvllsigg~~~-~--~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD 144 (379)
.+++.+||++.++.-+-.||||.=+ + +..|.. .-+++.+.+.|||-|++-
T Consensus 160 ~K~v~~Lr~~F~~~gLtFSIGGQISfDvFP~GWDK------------tyCLqhle~dgf~~IhFF 212 (252)
T KOG3189|consen 160 EKFVEALREEFADYGLTFSIGGQISFDVFPKGWDK------------TYCLQHLEKDGFDTIHFF 212 (252)
T ss_pred HHHHHHHHHHhcccCeeEEECCeEEEeecCCCcch------------hHHHHHhhhcCCceEEEe
Confidence 4577899999999999999999532 1 333332 126888999999998874
No 167
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=23.72 E-value=3e+02 Score=28.94 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeecC
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWEF 147 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E~ 147 (379)
.+-.|+-.+++|.=|+++++.||.-||.-.
T Consensus 333 hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 333 HPMVRKLIVDSLRYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred ChHHHHHHHHHHHHHHHHhCCCceeecchh
Confidence 366788899999999999999999999864
No 168
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=23.62 E-value=4.2e+02 Score=23.50 Aligned_cols=55 Identities=9% Similarity=-0.026 Sum_probs=33.2
Q ss_pred CCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCC-----------CcccchHHHHHH
Q 040415 94 PPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQN-----------PKEMHDLGLLLD 162 (379)
Q Consensus 94 ~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~-----------~~~~~~~~~fl~ 162 (379)
.+.+++++|++.+ .+.+. .++..+.+ ++|+|||+.--|.. -.+.+...++++
T Consensus 66 ~~~~vivnv~~~~--~ee~~--------------~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~ 128 (231)
T TIGR00736 66 SRALVSVNVRFVD--LEEAY--------------DVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLT 128 (231)
T ss_pred hcCCEEEEEecCC--HHHHH--------------HHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHH
Confidence 3568999999853 22221 23444444 79999999876652 124445555566
Q ss_pred HHH
Q 040415 163 EWR 165 (379)
Q Consensus 163 ~l~ 165 (379)
.++
T Consensus 129 av~ 131 (231)
T TIGR00736 129 KMK 131 (231)
T ss_pred HHH
Confidence 555
No 169
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=23.46 E-value=1e+02 Score=24.88 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEe-ecCCCCCcccchHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLD-WEFPQNPKEMHDLGLLLDEWRLAL 168 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD-~E~~~~~~~~~~~~~fl~~l~~~l 168 (379)
-+|..-..+.+.+++++++.+-.-|-|| .||..-..+-.....|+..||+..
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~ 107 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYA 107 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHe
Confidence 3677788899999999999665578888 577654345667778888888665
No 170
>PRK14057 epimerase; Provisional
Probab=23.22 E-value=3.7e+02 Score=24.26 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=41.3
Q ss_pred HHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHh--cCCCCeEEEEeeccccccccccccCCcChhhhhh
Q 040415 131 EVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKA--TCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR 208 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~--~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (379)
+-+.+-|.|=|-|..|-. ....+.++.+|+. |.. -++.+...-+++.+.... -.+..+.+
T Consensus 92 ~~~~~aGad~It~H~Ea~------~~~~~~l~~Ir~~----G~k~~~~~~~~kaGlAlnP~Tp~--------e~i~~~l~ 153 (254)
T PRK14057 92 QACVKAGAHCITLQAEGD------IHLHHTLSWLGQQ----TVPVIGGEMPVIRGISLCPATPL--------DVIIPILS 153 (254)
T ss_pred HHHHHhCCCEEEEeeccc------cCHHHHHHHHHHc----CCCcccccccceeEEEECCCCCH--------HHHHHHHH
Confidence 334445999999999932 2345555555553 100 001123456666543332 13556778
Q ss_pred cCcEEEeeccc
Q 040415 209 NLDWINAMCFD 219 (379)
Q Consensus 209 ~vD~v~lm~Yd 219 (379)
.+|+|.+|+-+
T Consensus 154 ~vD~VLvMtV~ 164 (254)
T PRK14057 154 DVEVIQLLAVN 164 (254)
T ss_pred hCCEEEEEEEC
Confidence 89999999985
No 171
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.14 E-value=1.9e+02 Score=26.05 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCC-cccchHHHHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNP-KEMHDLGLLLDEWRLALERE 171 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~-~~~~~~~~fl~~l~~~l~~~ 171 (379)
...++.+++.|||||+|....+... .....-...++++++.+++.
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 69 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVET 69 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHc
Confidence 4567888999999999986532110 00111234577788888763
No 172
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.12 E-value=2.6e+02 Score=25.06 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHH
Q 040415 128 SSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 128 ~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~ 170 (379)
..+..+.+.|||+++|....|........-...++++++.+++
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~ 56 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE 56 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3577888899999999988774321112223457777777765
No 173
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=23.07 E-value=5.6e+02 Score=23.07 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHh--------cCCCEEEEeecCCC
Q 040415 78 TAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARK--------FGFDGLDLDWEFPQ 149 (379)
Q Consensus 78 ~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~--------~g~DGidiD~E~~~ 149 (379)
.+..+...+.+|+ +.+++|++--|--.-. ..... ...+.|-++..= +++|||-||= -|.
T Consensus 51 pd~~Y~~~i~~L~-~~~nv~vlGYV~T~Yg-~R~~~----------~V~~dI~~Y~~W~~~~~~~~~~vdGIFfDE-~p~ 117 (253)
T PF12138_consen 51 PDANYAAAIPRLN-SYANVRVLGYVHTSYG-SRPLS----------EVKADIDTYASWYGQSEDYGYRVDGIFFDE-APN 117 (253)
T ss_pred CCHHHHHHHHHHH-hcCCCcEEEEEEcccc-CCCHH----------HHHHHHHHHhhccccccCCCcccceEEEec-CCC
Confidence 3456677776775 4578999865522111 22222 233334444433 7899999994 233
Q ss_pred CCcccchHHHHHHHHHHHHHH
Q 040415 150 NPKEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 150 ~~~~~~~~~~fl~~l~~~l~~ 170 (379)
. . .....+++|....++
T Consensus 118 ~---~-~~~~y~~~l~~~vk~ 134 (253)
T PF12138_consen 118 D---Y-ANLPYYQNLYNYVKS 134 (253)
T ss_pred c---H-HHHHHHHHHHHHHHh
Confidence 2 2 444555555555544
No 174
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=23.01 E-value=4e+02 Score=23.14 Aligned_cols=58 Identities=21% Similarity=0.010 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccc
Q 040415 129 SIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSV 190 (379)
Q Consensus 129 i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~ 190 (379)
++..+...|+|-|-||+|....+.++..=...+.++-..+...+ ..+..+.+.++...
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~----~~~~~~~VRvn~~~ 70 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR----AAGSEIIVRVNSLD 70 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT----TSSSEEEEE-SSTT
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc----cccccceecCCCCC
Confidence 45566678999999999986654554443334444333333211 12346777776533
No 175
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=22.47 E-value=2.8e+02 Score=28.46 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccC
Q 040415 120 RSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYR 199 (379)
Q Consensus 120 ~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~ 199 (379)
+..+-|-.++-.+++--.+.-+-|=+-...+.++......+++..+..+...+..-+ .+..+.+-+..+..
T Consensus 365 ~~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~-~~~~~g~mIE~p~a-------- 435 (575)
T PRK11177 365 DRKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFD-ESIEIGVMVETPAA-------- 435 (575)
T ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccC-CCcEEEEEEeCHHH--------
Confidence 345678888888877644322333333334445555566667766666654332211 12333333322222
Q ss_pred CcChhhhhhcCcEEEeecccccC
Q 040415 200 KYPVGSINRNLDWINAMCFDYHG 222 (379)
Q Consensus 200 ~~~~~~l~~~vD~v~lm~Yd~~~ 222 (379)
.....+|.+.+|++.+-+.|+..
T Consensus 436 ~~~~d~i~~~vDf~sIGtnDL~q 458 (575)
T PRK11177 436 AVIARHLAKEVDFFSIGTNDLTQ 458 (575)
T ss_pred HHhHHHHHhhCCEEEECcHHHHH
Confidence 24677888999999999999875
No 176
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.31 E-value=5.1e+02 Score=22.34 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeec-CCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccccccccccc
Q 040415 120 RSRQAFIHSSIEVARKFGFDGLDLDWE-FPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVY 198 (379)
Q Consensus 120 ~~r~~f~~~i~~~l~~~g~DGidiD~E-~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~ 198 (379)
.....+...+.+.+++.+.+-+.||== ......+...+..++..+...+++. +.+.-+........
T Consensus 98 ~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~-------~~t~llt~~~~~~~------ 164 (226)
T PF06745_consen 98 NDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR-------GVTTLLTSEMPSGS------ 164 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT-------TEEEEEEEEESSSS------
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC-------CCEEEEEEccccCc------
Confidence 456788899999999999999999942 1112345567888899998888763 23222222211111
Q ss_pred CCcChhhhhh-cCcEEEeecccccC
Q 040415 199 RKYPVGSINR-NLDWINAMCFDYHG 222 (379)
Q Consensus 199 ~~~~~~~l~~-~vD~v~lm~Yd~~~ 222 (379)
.......+.. .+|-|+.+.+...+
T Consensus 165 ~~~~~~~i~~~l~D~vI~L~~~~~~ 189 (226)
T PF06745_consen 165 EDDGTFGIEHYLADGVIELRYEEEG 189 (226)
T ss_dssp SSSSSTSHHHHHSSEEEEEEEEEET
T ss_pred ccccccchhhhcccEEEEEEEEeeC
Confidence 1122335566 89999999887553
No 177
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=22.29 E-value=2.4e+02 Score=28.59 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeec-CCCCC---------------cccchHHHHHHHHHHHHHH
Q 040415 118 HPRSRQAFIHSSIEVARKFGFDGLDLDWE-FPQNP---------------KEMHDLGLLLDEWRLALER 170 (379)
Q Consensus 118 ~~~~r~~f~~~i~~~l~~~g~DGidiD~E-~~~~~---------------~~~~~~~~fl~~l~~~l~~ 170 (379)
+++.|+.+.+.+.-++ +.|+||+-||-- ....+ .+......|++++|+.++.
T Consensus 168 np~v~~~i~~~~~~W~-~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 168 NPEVREELKDVVNFWR-DKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred CHHHHHHHHHHHHHHH-HcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 6778887777666666 479999999942 11100 1233467899999988754
No 178
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=22.20 E-value=3.5e+02 Score=22.37 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchh--------hhhCCHHHHHHHHHHHHHHHHhcCCCEEEE
Q 040415 79 AIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFV--------DMASHPRSRQAFIHSSIEVARKFGFDGLDL 143 (379)
Q Consensus 79 ~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~--------~~~~~~~~r~~f~~~i~~~l~~~g~DGidi 143 (379)
...+..+++.+++++|+.++++.---... ...+. ......+..+.+.+.+.++.+++++.=||+
T Consensus 91 ~~~~~~~i~~~~~~~~~~~ii~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~ 162 (199)
T cd01838 91 KENLRKIVSHLKSLSPKTKVILITPPPVD-EEAWEKSLEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDL 162 (199)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeCCCCCC-HHHHhhhhccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEH
Confidence 45677788888888899998875211111 11111 112233455667777788888888655554
No 179
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=22.15 E-value=1.2e+02 Score=26.58 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCCCcchhhhhCCH---------HH-HHHH-HHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHH
Q 040415 97 KTLFSIGGAGADTSIFVDMASHP---------RS-RQAF-IHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEW 164 (379)
Q Consensus 97 kvllsigg~~~~~~~~~~~~~~~---------~~-r~~f-~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l 164 (379)
++++.|||.-. ...|.+++.+. +. .... -+-+.+.+++.+.+-+-|||....+ .++..+.++++++
T Consensus 131 ~~~ig~GG~HY-apr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHY-APRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT--HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCccc-chhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 89999999776 44444432221 00 0111 2334455566689999999986654 6666666666554
No 180
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=22.15 E-value=72 Score=22.87 Aligned_cols=48 Identities=10% Similarity=-0.011 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEW 164 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l 164 (379)
-++..|..|.+.+.++-.+-+.|++-.|.+-..+...+...-.|+.+|
T Consensus 16 Lt~~ER~~i~qaL~~y~~~Rnvd~Li~~v~pVLDtPaK~~iw~~i~~l 63 (80)
T cd07355 16 LTPPERYGIKKALEDYFQHRNIDTLIVDVYPVLDTPAKQVIWQYIYQL 63 (80)
T ss_pred CCHHHHHHHHHHHHHHHHhccHHHHHhhhhhhcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999999988555445566666666554
No 181
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=22.06 E-value=87 Score=22.69 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=13.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHhc
Q 040415 1 MASLHYVCSLLSILVCLITIAAT 23 (379)
Q Consensus 1 m~~~~~~~~l~~l~~~~~~~~~~ 23 (379)
|.....++.||..-+++++++++
T Consensus 1 MaRRlwiLslLAVtLtVALAAPs 23 (100)
T PF05984_consen 1 MARRLWILSLLAVTLTVALAAPS 23 (100)
T ss_pred CchhhHHHHHHHHHHHHHhhccc
Confidence 55544555666666666666653
No 182
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.01 E-value=2.4e+02 Score=25.41 Aligned_cols=45 Identities=13% Similarity=0.079 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCEEEEeecCCCCCcccch-HHHHHHHHHHHHHHH
Q 040415 127 HSSIEVARKFGFDGLDLDWEFPQNPKEMHD-LGLLLDEWRLALERE 171 (379)
Q Consensus 127 ~~i~~~l~~~g~DGidiD~E~~~~~~~~~~-~~~fl~~l~~~l~~~ 171 (379)
...++.+++.|||||+|....+........ -..-++++++.+++.
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 64 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYET 64 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHc
Confidence 457889999999999997643211000011 123477888888774
No 183
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=21.94 E-value=4.7e+02 Score=22.42 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcC
Q 040415 131 EVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNL 210 (379)
Q Consensus 131 ~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~v 210 (379)
..+.+.|.|||-+..+.. +....+++.++.. ++.+.+.+.+.... -....+...+
T Consensus 78 ~~~~~~g~d~v~vh~~~~------~~~~~~~~~~~~~-----------~~~~g~~~~~~t~~--------e~~~~~~~~~ 132 (220)
T PRK05581 78 PDFAKAGADIITFHVEAS------EHIHRLLQLIKSA-----------GIKAGLVLNPATPL--------EPLEDVLDLL 132 (220)
T ss_pred HHHHHcCCCEEEEeeccc------hhHHHHHHHHHHc-----------CCEEEEEECCCCCH--------HHHHHHHhhC
Confidence 444577999988887632 1223333333321 34455454322111 1244566679
Q ss_pred cEEEeecccc
Q 040415 211 DWINAMCFDY 220 (379)
Q Consensus 211 D~v~lm~Yd~ 220 (379)
||+.+++.+.
T Consensus 133 d~i~~~~~~~ 142 (220)
T PRK05581 133 DLVLLMSVNP 142 (220)
T ss_pred CEEEEEEECC
Confidence 9999998753
No 184
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=21.56 E-value=4.2e+02 Score=24.12 Aligned_cols=93 Identities=14% Similarity=0.243 Sum_probs=51.1
Q ss_pred EEEecCC-----CCCC--CCCCCCCCCCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCC
Q 040415 35 AAYWPSW-----AESF--PPSAINTNLFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGA 107 (379)
Q Consensus 35 ~gy~~~w-----~~~~--~~~~~~~~~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~ 107 (379)
-+||.+| ..++ -....+....+.|.+.--.++ .+.+-..++..+.+.+..+..+.=..-+..+|.|.+.
T Consensus 11 PAfY~~Wf~nRl~~G~v~vrNPfn~~qvsrv~l~p~~Vd----~iVFWTKnp~P~l~~L~~l~~~gy~~yfq~Tit~Y~~ 86 (266)
T PF08902_consen 11 PAFYSDWFMNRLREGYVLVRNPFNPHQVSRVSLSPEDVD----CIVFWTKNPAPFLPYLDELDERGYPYYFQFTITGYGK 86 (266)
T ss_pred ccchHHHHHHHhhCCEEEeECCCCCCceEEEEcChhcce----EEEEecCCcHHHHhhHHHHHhCCCceEEEEEeCCCCc
Confidence 4677777 2222 222233346666665433333 5555555566666777788775444566678887643
Q ss_pred CCcchhhhhCCHHHHHHHHHHHHHHHHhcC
Q 040415 108 DTSIFVDMASHPRSRQAFIHSSIEVARKFG 137 (379)
Q Consensus 108 ~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g 137 (379)
.+..-+-+ .++.++....+-+..|
T Consensus 87 ---~lEp~vP~---~~~~i~~f~~Ls~~iG 110 (266)
T PF08902_consen 87 ---DLEPNVPP---KDERIETFRELSERIG 110 (266)
T ss_pred ---cccCCCCC---HHHHHHHHHHHHHHHC
Confidence 23333333 2335666666666666
No 185
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.41 E-value=5.7e+02 Score=22.58 Aligned_cols=78 Identities=15% Similarity=0.087 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcCCCCeEE--EEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCCcccchH
Q 040415 80 IQLSNFTTTLHHKNPPVKTL--FSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNPKEMHDL 157 (379)
Q Consensus 80 ~~~~~~~~~lk~~~~~~kvl--lsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~~~~~~~ 157 (379)
+.+.+.++.+|+.+..+.++ +|=||.. +...-...+++.+++.|+.=|-|..-.-+.+......
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGGVH--------------Sh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~ 79 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGGVH--------------SHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSA 79 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-SSS----------------HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCCcc--------------ccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchH
Confidence 45677777888766556655 3445542 2335566789999999998887776543433455678
Q ss_pred HHHHHHHHHHHHHH
Q 040415 158 GLLLDEWRLALERE 171 (379)
Q Consensus 158 ~~fl~~l~~~l~~~ 171 (379)
..+|++|.+.+...
T Consensus 80 ~~yl~~l~~~l~~~ 93 (223)
T PF06415_consen 80 LKYLEELEEKLAEI 93 (223)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 88899999888874
No 186
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.26 E-value=3.7e+02 Score=22.83 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhc
Q 040415 130 IEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRN 209 (379)
Q Consensus 130 ~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~ 209 (379)
++.+.+.|.|||.+.-+.+ .....+++.+++. + ....+.+. +.... -.+.++...
T Consensus 72 ~~~~~~~gadgv~vh~~~~------~~~~~~~~~~~~~--------g-~~~~~~~~--~~t~~--------e~~~~~~~~ 126 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS------EHIHRLLQLIKDL--------G-AKAGIVLN--PATPL--------EFLEYVLPD 126 (210)
T ss_pred HHHHHHcCCCEEEEccCCc------hhHHHHHHHHHHc--------C-CcEEEEEC--CCCCH--------HHHHHHHhh
Confidence 6667789999999876521 2234444443332 1 12334332 21111 124556667
Q ss_pred CcEEEeeccc
Q 040415 210 LDWINAMCFD 219 (379)
Q Consensus 210 vD~v~lm~Yd 219 (379)
+|++.+++.+
T Consensus 127 ~d~i~~~~~~ 136 (210)
T TIGR01163 127 VDLVLLMSVN 136 (210)
T ss_pred CCEEEEEEEc
Confidence 8999998865
No 187
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=21.24 E-value=2.4e+02 Score=28.68 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEeec-CCCCC----c-----------ccchHHHHHHHHHHHH
Q 040415 117 SHPRSRQAFIHSSIEVARKFGFDGLDLDWE-FPQNP----K-----------EMHDLGLLLDEWRLAL 168 (379)
Q Consensus 117 ~~~~~r~~f~~~i~~~l~~~g~DGidiD~E-~~~~~----~-----------~~~~~~~fl~~l~~~l 168 (379)
.+++.|+.+.+.+..++ +.|+||+-+|-- +.... . +......|+++++..+
T Consensus 174 ~np~V~~~l~~~~~~W~-~~GvDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 240 (551)
T PRK10933 174 ENPAVRAELKKVCEFWA-DRGVDGLRLDVVNLISKDQDFPDDLDGDGRRFYTDGPRAHEFLQEMNRDV 240 (551)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCcEEEEcchhhcCcCCCCCCCcccccccccCCChHHHHHHHHHHHHh
Confidence 46788888887766676 589999999942 11110 0 1123568888888754
No 188
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.17 E-value=6e+02 Score=22.74 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCCeeeeccccccceeccCCCCCCCCCCCC---CCCCCCCccccHHHHHHhhh
Q 040415 257 HRSKLVMGLPLYGRSWKLKDPNSHEIGSPAV---DVGPGDKGLMQFVQVGEFNR 307 (379)
Q Consensus 257 ~~~Kl~lglp~yG~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~y~~i~~~~~ 307 (379)
...-|.+++.-.|+--++.++.- |+|.+ .....-+|+++..++.++++
T Consensus 197 ~~P~i~~~MG~~G~~SRil~~~~---GS~~ty~~~~~~sAPGQ~~~~el~~i~~ 247 (253)
T PRK02412 197 DQPLITMSMGKLGRISRLAGEVF---GSSWTFASLDKASAPGQISVEDLRRILE 247 (253)
T ss_pred CCCEEEEeCCCCchHHHcchhhh---CCcceecCCCCCCCCCCCCHHHHHHHHH
Confidence 34457788888887666655422 22211 11122378999988888765
No 189
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=20.85 E-value=4.7e+02 Score=21.78 Aligned_cols=102 Identities=10% Similarity=0.088 Sum_probs=61.3
Q ss_pred HHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHHHhcCCCEEEEeecCCCCC-cc-c-------
Q 040415 84 NFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVARKFGFDGLDLDWEFPQNP-KE-M------- 154 (379)
Q Consensus 84 ~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~~g~DGidiD~E~~~~~-~~-~------- 154 (379)
..++.|+ .++++|+..|....- ...+ .++...||=|-+.+-..+.. ++ .
T Consensus 44 ~nl~~L~--~~g~~V~~~VDat~l-~~~~-------------------~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr 101 (166)
T PF10354_consen 44 ENLEELR--ELGVTVLHGVDATKL-HKHF-------------------RLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNR 101 (166)
T ss_pred HHHHHHh--hcCCccccCCCCCcc-cccc-------------------cccCCcCCEEEEeCCCCCCCccchhHHHHHHH
Confidence 4455663 468899987766432 1111 44666799999999877621 11 1
Q ss_pred chHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhhcCcEEEeeccccc
Q 040415 155 HDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINRNLDWINAMCFDYH 221 (379)
Q Consensus 155 ~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~Yd~~ 221 (379)
.-+..|++..+..|... ..+.||+.-..+.. .+++++++....++.+...++.
T Consensus 102 ~Ll~~Ff~Sa~~~L~~~------G~IhVTl~~~~py~--------~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 102 ELLRGFFKSASQLLKPD------GEIHVTLKDGQPYD--------SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred HHHHHHHHHHHHhcCCC------CEEEEEeCCCCCCc--------cccHHHHHHhcCCEEEEEecCC
Confidence 22334444444444321 23556666443333 3588999999999999888765
No 190
>PLN02428 lipoic acid synthase
Probab=20.74 E-value=7.4e+02 Score=23.59 Aligned_cols=70 Identities=9% Similarity=0.087 Sum_probs=46.6
Q ss_pred CCcEEEEEEEeeeCCCcEEEeCCcchHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCcchhhhhCCHHHHHHHHHHHHHHH
Q 040415 54 LFTHIYYAFLMPNNVTYKFNIDNSTAIQLSNFTTTLHHKNPPVKTLFSIGGAGADTSIFVDMASHPRSRQAFIHSSIEVA 133 (379)
Q Consensus 54 ~~t~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l 133 (379)
.+.|+++.....+. .++.....+.+.++.+|+..|.+++-..+.+... + ..+++.|
T Consensus 146 Glk~vvltSg~rdd------l~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~~----------d--------~elL~~L 201 (349)
T PLN02428 146 GVDYVVLTSVDRDD------LPDGGSGHFAETVRRLKQLKPEILVEALVPDFRG----------D--------LGAVETV 201 (349)
T ss_pred CCCEEEEEEcCCCC------CCcccHHHHHHHHHHHHHhCCCcEEEEeCccccC----------C--------HHHHHHH
Confidence 46676665432221 1334556778888899998898887775443211 1 4578888
Q ss_pred HhcCCCEEEEeecC
Q 040415 134 RKFGFDGLDLDWEF 147 (379)
Q Consensus 134 ~~~g~DGidiD~E~ 147 (379)
++-|+|.+....|-
T Consensus 202 ~eAG~d~i~hnlET 215 (349)
T PLN02428 202 ATSGLDVFAHNIET 215 (349)
T ss_pred HHcCCCEEccCccC
Confidence 88999999999884
No 191
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.38 E-value=6.1e+02 Score=22.49 Aligned_cols=66 Identities=20% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCEEEEeecCCCCCcccchHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccccccccccccCCcChhhhhh
Q 040415 129 SIEVARKFGFDGLDLDWEFPQNPKEMHDLGLLLDEWRLALEREAKATCQPPLLFTAAVYFSVDFFVADVYRKYPVGSINR 208 (379)
Q Consensus 129 i~~~l~~~g~DGidiD~E~~~~~~~~~~~~~fl~~l~~~l~~~~~~~~~~~~~ls~a~~~~~~~~~~~~~~~~~~~~l~~ 208 (379)
.++.+.+.|.||+-+--..+ +. +.++.+.+++ .++...+.+.+.... -.++.+.+
T Consensus 96 fi~~~~~aG~~giiipDl~~------ee----~~~~~~~~~~-------~g~~~i~~i~P~T~~--------~~i~~i~~ 150 (242)
T cd04724 96 FLRDAKEAGVDGLIIPDLPP------EE----AEEFREAAKE-------YGLDLIFLVAPTTPD--------ERIKKIAE 150 (242)
T ss_pred HHHHHHHCCCcEEEECCCCH------HH----HHHHHHHHHH-------cCCcEEEEeCCCCCH--------HHHHHHHh
Confidence 45666778999999943311 12 3333444433 234344444332222 13455666
Q ss_pred -cCcEEEeeccc
Q 040415 209 -NLDWINAMCFD 219 (379)
Q Consensus 209 -~vD~v~lm~Yd 219 (379)
..|++.+|+..
T Consensus 151 ~~~~~vy~~s~~ 162 (242)
T cd04724 151 LASGFIYYVSRT 162 (242)
T ss_pred hCCCCEEEEeCC
Confidence 78999999863
Done!