Query 040417
Match_columns 144
No_of_seqs 110 out of 663
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kil_E Complexin I snare-compl 84.3 0.43 1.5E-05 28.6 1.5 12 76-87 38-49 (49)
2 3rk3_E Complexin-1; snare prot 82.6 0.57 1.9E-05 29.3 1.6 14 76-89 41-54 (63)
3 1l4a_E Synaphin A; snare, snar 80.4 0.73 2.5E-05 30.1 1.6 14 76-89 45-58 (79)
4 1zbd_B Rabphilin-3A; G protein 18.0 38 0.0013 23.9 0.9 15 103-117 100-114 (134)
5 4egd_A Uncharacterized protein 14.6 65 0.0022 25.3 1.5 14 77-90 193-206 (260)
6 2zet_C Melanophilin; complex, 13.8 67 0.0023 23.1 1.3 15 103-117 110-124 (153)
7 1yfb_A Transition state regula 11.0 1.3E+02 0.0045 18.0 1.8 14 77-90 26-39 (59)
8 1juq_A ADP-ribosylation factor 9.8 2.1E+02 0.0071 20.6 2.9 32 105-136 135-168 (171)
9 2l66_A SSO7C4, transcriptional 9.3 1.7E+02 0.0058 16.7 1.9 13 78-90 17-29 (53)
10 3k6g_A Telomeric repeat-bindin 9.3 1.2E+02 0.0042 20.8 1.3 13 76-88 75-87 (111)
No 1
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.25 E-value=0.43 Score=28.59 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=10.5
Q ss_pred hHHHHHHHHcCC
Q 040417 76 GYRRTLRTKYNL 87 (144)
Q Consensus 76 ~~R~~iR~rygI 87 (144)
..|+.||.||||
T Consensus 38 ~mRq~IRdKY~i 49 (49)
T 1kil_E 38 VMRQGIRDKYGI 49 (49)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhcCC
Confidence 369999999998
No 2
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=82.56 E-value=0.57 Score=29.35 Aligned_cols=14 Identities=29% Similarity=0.638 Sum_probs=11.6
Q ss_pred hHHHHHHHHcCCCC
Q 040417 76 GYRRTLRTKYNLPE 89 (144)
Q Consensus 76 ~~R~~iR~rygI~G 89 (144)
..|+.||.||||+-
T Consensus 41 ~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 41 AVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhccch
Confidence 36999999999974
No 3
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=80.38 E-value=0.73 Score=30.10 Aligned_cols=14 Identities=43% Similarity=0.743 Sum_probs=11.6
Q ss_pred hHHHHHHHHcCCCC
Q 040417 76 GYRRTLRTKYNLPE 89 (144)
Q Consensus 76 ~~R~~iR~rygI~G 89 (144)
..|+.||.||||+-
T Consensus 45 ~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 45 EMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHTCC-
T ss_pred HHHHHHHHHhcccc
Confidence 36999999999974
No 4
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=18.02 E-value=38 Score=23.90 Aligned_cols=15 Identities=60% Similarity=1.083 Sum_probs=12.9
Q ss_pred hHHhhHHHHHHHhhc
Q 040417 103 LCAICQEYREIRERS 117 (144)
Q Consensus 103 ~Cal~Qe~REl~~r~ 117 (144)
-|.+||..|||+.+.
T Consensus 100 ~C~vC~k~rel~~kS 114 (134)
T 1zbd_B 100 LCKICLEQREVWKRS 114 (134)
T ss_dssp EEHHHHHHHHHHHHT
T ss_pred echhhHHHHHHHHhh
Confidence 688999999998774
No 5
>4egd_A Uncharacterized protein saouhsc_02783; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Staphylococcus aureus subsp} PDB: 4eg9_A
Probab=14.65 E-value=65 Score=25.30 Aligned_cols=14 Identities=29% Similarity=0.703 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCC
Q 040417 77 YRRTLRTKYNLPEA 90 (144)
Q Consensus 77 ~R~~iR~rygI~Gs 90 (144)
--.++|+||+|+-.
T Consensus 193 NVKQLRkrY~IpT~ 206 (260)
T 4egd_A 193 NVQQLRKRYDIPTK 206 (260)
T ss_dssp HHHHHHHHSCCCCC
T ss_pred hHHHHHHhcCCCCC
Confidence 34689999999854
No 6
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=13.78 E-value=67 Score=23.13 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.5
Q ss_pred hHHhhHHHHHHHhhc
Q 040417 103 LCAICQEYREIRERS 117 (144)
Q Consensus 103 ~Cal~Qe~REl~~r~ 117 (144)
-|.+||+.|||+.+.
T Consensus 110 ~C~vC~k~rel~~kS 124 (153)
T 2zet_C 110 LCDPCHLARVVKIGS 124 (153)
T ss_dssp EEHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHhc
Confidence 578999999998763
No 7
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=11.04 E-value=1.3e+02 Score=17.99 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHHHHcCCCCC
Q 040417 77 YRRTLRTKYNLPEA 90 (144)
Q Consensus 77 ~R~~iR~rygI~Gs 90 (144)
.=.++|+++||+..
T Consensus 26 IPkeiR~~Lgi~~G 39 (59)
T 1yfb_A 26 IPIELRRTLGIAEK 39 (59)
T ss_dssp CCHHHHHHTTCCTT
T ss_pred eCHHHHHHcCCCCC
Confidence 34689999999854
No 8
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=9.81 E-value=2.1e+02 Score=20.59 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=16.3
Q ss_pred HhhHHHHHHHhhcCCCCCCccc--ccccCCCccc
Q 040417 105 AICQEYREIRERSSDANPPDLS--LAVVTVPPTQ 136 (144)
Q Consensus 105 al~Qe~REl~~r~~~~~~~~~~--~~~~~pp~~q 136 (144)
.+.+.+++|+.+|..-..|... ..+-+||+.+
T Consensus 135 ~i~~~y~~Lk~~G~~f~~P~~~~~~~~f~~p~~~ 168 (171)
T 1juq_A 135 KIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPR 168 (171)
T ss_dssp HHHHHHHHHHHTTSCSSCCCBCCCTTCC------
T ss_pred HHHHHHHHHHHCCCCCCCCCCCccccCCCCCCCC
Confidence 4788999999998754333322 1233555544
No 9
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=9.30 E-value=1.7e+02 Score=16.67 Aligned_cols=13 Identities=23% Similarity=0.524 Sum_probs=10.3
Q ss_pred HHHHHHHcCCCCC
Q 040417 78 RRTLRTKYNLPEA 90 (144)
Q Consensus 78 R~~iR~rygI~Gs 90 (144)
=.++|+++||+..
T Consensus 17 Pk~ir~~lgi~~G 29 (53)
T 2l66_A 17 PAKVRQKFQIKEG 29 (53)
T ss_dssp CHHHHHHSCCCTT
T ss_pred CHHHHHHcCcCCC
Confidence 3689999999854
No 10
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=9.28 E-value=1.2e+02 Score=20.76 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.9
Q ss_pred hHHHHHHHHcCCC
Q 040417 76 GYRRTLRTKYNLP 88 (144)
Q Consensus 76 ~~R~~iR~rygI~ 88 (144)
..|.++|+|||-+
T Consensus 75 ~~R~qL~~KfG~e 87 (111)
T 3k6g_A 75 DTREALVKKFGAQ 87 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhhH
Confidence 5799999999953
Done!