Query 040417
Match_columns 144
No_of_seqs 110 out of 663
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 13:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040417.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040417hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tjla2 g.39.1.13 (A:111-151) 22.7 17 0.0013 19.1 1.4 16 102-117 23-38 (41)
2 d2odgc1 a.140.1.1 (C:2-47) Inn 20.0 30 0.0022 18.8 2.0 17 80-96 13-29 (46)
3 d1mkya3 d.52.5.1 (A:359-439) P 19.4 33 0.0024 20.5 2.4 20 73-92 53-73 (81)
4 d2b1ya1 b.156.1.1 (A:4-104) Hy 15.9 48 0.0035 20.9 2.6 20 123-142 81-100 (101)
5 d1e0ea_ a.4.10.1 (A:) N-termin 13.7 23 0.0017 19.3 0.4 18 80-97 21-38 (46)
6 d2g3ra2 b.34.9.1 (A:1538-1603) 9.5 38 0.0027 19.4 0.4 15 73-87 51-65 (66)
7 d1nexa1 a.157.1.1 (A:116-185) 9.2 68 0.005 18.4 1.6 15 76-90 46-60 (70)
8 d2pnga1 a.28.1.1 (A:1-76) Type 8.9 80 0.0058 17.9 1.9 18 73-90 40-57 (76)
9 d2adra2 g.37.1.1 (A:131-161) A 7.8 93 0.0068 15.3 1.5 14 81-94 18-31 (31)
10 d1zrja1 a.140.2.1 (A:1-37) Het 7.5 1.4E+02 0.01 15.0 2.2 18 105-122 7-24 (37)
No 1
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc finger domain {Escherichia coli [TaxId: 562]}
Probab=22.74 E-value=17 Score=19.13 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=12.5
Q ss_pred hhHHhhHHHHHHHhhc
Q 040417 102 HLCAICQEYREIRERS 117 (144)
Q Consensus 102 ~~Cal~Qe~REl~~r~ 117 (144)
.-|+-||+..|-+.|.
T Consensus 23 ~~Cv~Cq~~~E~~~r~ 38 (41)
T d1tjla2 23 DLCIDCKTLAEIREKQ 38 (41)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh
Confidence 4688899999987664
No 2
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.99 E-value=30 Score=18.83 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=13.3
Q ss_pred HHHHHcCCCCCCcchhh
Q 040417 80 TLRTKYNLPEAPCGDFV 96 (144)
Q Consensus 80 ~iR~rygI~Gs~~~D~l 96 (144)
++-++|||+..++-|-=
T Consensus 13 ~lL~~y~I~HGPvVdst 29 (46)
T d2odgc1 13 TLLRRYNIPHGPVVGST 29 (46)
T ss_dssp HHHHHTTCCCCCCCHHH
T ss_pred HHHHHhCCCCCCcccch
Confidence 55678999999887753
No 3
>d1mkya3 d.52.5.1 (A:359-439) Probable GTPase Der, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=19.43 E-value=33 Score=20.47 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=16.3
Q ss_pred chhhHHHHHHHH-cCCCCCCc
Q 040417 73 YACGYRRTLRTK-YNLPEAPC 92 (144)
Q Consensus 73 ~~~~~R~~iR~r-ygI~Gs~~ 92 (144)
|.=.+..++|+. ||++|.++
T Consensus 53 Y~ryL~n~lR~~~f~~~G~Pi 73 (81)
T d1mkya3 53 QKIFLRKLIRDYVFPFEGSPI 73 (81)
T ss_dssp HHHHHHHHHHHHTCCCTTCCC
T ss_pred HHHHHHHHHHHHhCCCCccCE
Confidence 555678899997 99999875
No 4
>d2b1ya1 b.156.1.1 (A:4-104) Hypothetical protein Atu1913 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=15.87 E-value=48 Score=20.91 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=14.9
Q ss_pred CcccccccCCCccccccCCC
Q 040417 123 PDLSLAVVTVPPTQTMESGS 142 (144)
Q Consensus 123 ~~~~~~~~~pp~~q~m~~~~ 142 (144)
...++.+..+||+|.|.+.+
T Consensus 81 ~~sSVkvi~~~~~~~~~~~~ 100 (101)
T d2b1ya1 81 AESSVKMLPAQPQATLTRKA 100 (101)
T ss_dssp CCCCCCCCCCCCCCCCCCCC
T ss_pred EEEEEEEecCCCCccccccC
Confidence 34556677899999998864
No 5
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=13.70 E-value=23 Score=19.26 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=12.7
Q ss_pred HHHHHcCCCCCCcchhhH
Q 040417 80 TLRTKYNLPEAPCGDFVT 97 (144)
Q Consensus 80 ~iR~rygI~Gs~~~D~l~ 97 (144)
.+|.+|||+-.-..+.+.
T Consensus 21 ~L~~~F~lp~~vAr~IV~ 38 (46)
T d1e0ea_ 21 ELSHKFGIPNLVARQIVN 38 (46)
T ss_dssp HHHHHTCCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 688999997655555554
No 6
>d2g3ra2 b.34.9.1 (A:1538-1603) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.49 E-value=38 Score=19.44 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHcCC
Q 040417 73 YACGYRRTLRTKYNL 87 (144)
Q Consensus 73 ~~~~~R~~iR~rygI 87 (144)
++.-+-.++|++||+
T Consensus 51 lsleqgnrlreqygl 65 (66)
T d2g3ra2 51 LSLEQGNRLREQYGL 65 (66)
T ss_dssp BCHHHHHTTHHHHBC
T ss_pred EEhhhhhhHHHhhCC
Confidence 567888999999987
No 7
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.17 E-value=68 Score=18.43 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=12.1
Q ss_pred hHHHHHHHHcCCCCC
Q 040417 76 GYRRTLRTKYNLPEA 90 (144)
Q Consensus 76 ~~R~~iR~rygI~Gs 90 (144)
..-.+||+.+||+..
T Consensus 46 kt~eeiR~~f~I~~D 60 (70)
T d1nexa1 46 RSPEEIRRTFNIVND 60 (70)
T ss_dssp CCHHHHHHHHTCCCC
T ss_pred CCHHHHHHHhCCCCC
Confidence 456799999999864
No 8
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.93 E-value=80 Score=17.89 Aligned_cols=18 Identities=17% Similarity=0.170 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHcCCCCC
Q 040417 73 YACGYRRTLRTKYNLPEA 90 (144)
Q Consensus 73 ~~~~~R~~iR~rygI~Gs 90 (144)
.....+.+|+++||++=+
T Consensus 40 ~a~el~~~i~~~~g~~l~ 57 (76)
T d2pnga1 40 MGVEVRQILEREHDLVLP 57 (76)
T ss_dssp HHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 567889999999999744
No 9
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=7.82 E-value=93 Score=15.27 Aligned_cols=14 Identities=14% Similarity=0.363 Sum_probs=11.2
Q ss_pred HHHHcCCCCCCcch
Q 040417 81 LRTKYNLPEAPCGD 94 (144)
Q Consensus 81 iR~rygI~Gs~~~D 94 (144)
+|...+|.+..++|
T Consensus 18 LRH~qKlH~g~cgd 31 (31)
T d2adra2 18 IRHAQKIHSGNLGE 31 (31)
T ss_dssp HHHHTTTSCCSSCC
T ss_pred HHHHHHHhcCcCCC
Confidence 58888998887776
No 10
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.47 E-value=1.4e+02 Score=15.01 Aligned_cols=18 Identities=17% Similarity=0.255 Sum_probs=14.5
Q ss_pred HhhHHHHHHHhhcCCCCC
Q 040417 105 AICQEYREIRERSSDANP 122 (144)
Q Consensus 105 al~Qe~REl~~r~~~~~~ 122 (144)
.+.|...|++.|+...+|
T Consensus 7 ~V~eLK~~Lk~rgL~~sG 24 (37)
T d1zrja1 7 KVNELREELQRRGLDTRG 24 (37)
T ss_dssp CHHHHHHHHHHTTCCCCS
T ss_pred cHHHHHHHHHHCCCCCCC
Confidence 356788899999988876
Done!