Query 040418
Match_columns 249
No_of_seqs 142 out of 930
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06899 lectin_legume_LecRK_Ar 100.0 5.6E-52 1.2E-56 365.2 22.5 207 31-249 1-211 (236)
2 PF00139 Lectin_legB: Legume l 100.0 4E-51 8.8E-56 359.3 18.9 210 31-249 2-214 (236)
3 cd01951 lectin_L-type legume l 100.0 2E-36 4.2E-41 263.3 21.1 183 40-249 13-200 (223)
4 cd07308 lectin_leg-like legume 99.8 1.9E-17 4E-22 143.9 20.3 146 41-224 20-173 (218)
5 cd06901 lectin_VIP36_VIPL VIP3 99.5 4.5E-12 9.6E-17 112.7 20.1 151 40-224 19-178 (248)
6 cd06902 lectin_ERGIC-53_ERGL E 99.4 1.3E-10 2.8E-15 102.0 20.2 151 41-223 22-175 (225)
7 cd06903 lectin_EMP46_EMP47 EMP 99.2 3.5E-09 7.7E-14 92.3 17.6 145 41-223 21-173 (215)
8 PF03388 Lectin_leg-like: Legu 98.9 6.5E-08 1.4E-12 85.0 16.5 153 41-223 22-179 (229)
9 cd06900 lectin_VcfQ VcfQ bacte 98.4 1.8E-06 3.9E-11 76.0 10.5 94 54-161 31-126 (255)
10 KOG3838 Mannose lectin ERGIC-5 97.7 0.0027 5.9E-08 59.5 16.0 152 42-225 55-209 (497)
11 KOG3839 Lectin VIP36, involved 97.7 0.0024 5.1E-08 58.7 15.3 94 41-161 72-165 (351)
12 PF07172 GRP: Glycine rich pro 80.7 1.4 3E-05 33.7 2.4 19 1-19 1-19 (95)
13 KOG3514 Neurexin III-alpha [Si 62.1 49 0.0011 35.7 9.0 132 41-219 804-939 (1591)
14 PF10731 Anophelin: Thrombin i 48.1 19 0.00042 25.2 2.5 37 1-39 1-39 (65)
15 smart00282 LamG Laminin G doma 46.9 1.3E+02 0.0028 23.0 9.7 26 196-223 57-82 (135)
16 cd00110 LamG Laminin G domain; 44.2 1.5E+02 0.0031 22.8 11.8 26 197-224 76-101 (151)
17 PF13619 KTSC: KTSC domain 33.5 49 0.0011 22.6 2.8 20 205-224 6-25 (60)
18 smart00560 LamGL LamG-like jel 32.6 64 0.0014 25.2 3.7 23 201-223 61-83 (133)
19 smart00159 PTX Pentraxin / C-r 32.5 61 0.0013 27.6 3.8 27 197-223 86-112 (206)
20 PF10049 DUF2283: Protein of u 28.3 67 0.0015 21.2 2.7 16 207-222 2-17 (50)
21 PRK10894 lipopolysaccharide tr 28.3 1.2E+02 0.0025 25.4 4.8 20 41-61 46-65 (180)
22 cd00152 PTX Pentraxins are pla 28.2 78 0.0017 26.8 3.7 26 198-223 87-112 (201)
No 1
>cd06899 lectin_legume_LecRK_Arcelin_ConA legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor. This alignment model includes the legume lectins (also known as agglutinins), the arcelin (also known as phytohemagglutinin-L) family of lectin-like defense proteins, the LecRK family of lectin-like receptor kinases, concanavalinA (ConA), and an alpha-amylase inhibitor. Arcelin is a major seed glycoprotein discovered in kidney beans (Phaseolus vulgaris) that has insecticidal properties and protects the seeds from predation by larvae of various bruchids. Arcelin is devoid of monosaccharide binding properties and lacks a key metal-binding loop that is present in other members of this family. Phytohaemagglutinin (PHA) is a lectin found in plants, especially beans, that affects cell metabolism by inducing mitosis and by altering the permeability of the cell membrane to various proteins. PHA agglutinates most mammalian red blood cell types by bindin
Probab=100.00 E-value=5.6e-52 Score=365.18 Aligned_cols=207 Identities=49% Similarity=0.763 Sum_probs=185.1
Q ss_pred ceEEeCCCCC--CCeEEeeceEECcCCeEEccCCC--CCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeec
Q 040418 31 PSFIYNGFRS--ANLSLDGIAQFTSNGLLKLTNET--KGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSE 106 (249)
Q Consensus 31 ~sF~f~~F~~--~~l~l~G~A~~~~~g~l~LT~~~--~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~ 106 (249)
++|+|++|.. ++|+++|+|.+..++.|+||++. .+++|||||++||+||++. +++++||+|+|+|.|.+.
T Consensus 1 ~~f~f~~f~~~~~~l~l~G~A~~~~~~~i~LT~~~~~~~~~G~v~y~~pi~l~~~~------~~~~~sFst~F~F~i~~~ 74 (236)
T cd06899 1 LSFNFNGFSSDQSNLTLQGDATISSNGALQLTNDTSPASSVGRALYSKPVRLWDST------TGKVASFSTSFSFSITPP 74 (236)
T ss_pred CceecCCCCCCCCCEEEecceEcCCCCeEEecCCCCCCcceEEEEeCCCEEeecCC------CCCceeEEEEEEEEEEcC
Confidence 4799999986 79999999999658999999998 8999999999999999987 889999999999999986
Q ss_pred cccCccccceEEEEccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcCCCcccccccC
Q 040418 107 FHTTLSAHGIAFVIAPTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDINSLKSEISYPA 186 (249)
Q Consensus 107 ~~~~~~gdGlAFvl~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvns~~S~~t~~~ 186 (249)
....+||||||+|+|....+.+..|++|||.+.++.+...++.|||||||++|.+++||+.+|||||+|++.|..+..+
T Consensus 75 -~~~~~gdGlAF~i~~~~~~~~~~~G~~lG~~~~~~~~~~~~~~vAVEFDT~~n~~~~D~~~nHigIdvn~~~S~~~~~~ 153 (236)
T cd06899 75 -NPSLGGDGLAFFLAPTDSLPPASSGGYLGLFNSSNNGNSSNHIVAVEFDTFQNPEFGDPDDNHVGIDVNSLVSVKAGYW 153 (236)
T ss_pred -CCCCCCCeEEEEEecCCCCCCCCCcceeeeecCCCCCCcccceEEEEeecccCcccCCCCCCeEEEEcCCcccceeecc
Confidence 4567899999999998755557889999999887666677899999999999998889999999999999988877665
Q ss_pred CccCCCcccccccCCcceEEEEEEeCCCcEEEEEEeeCCCCCCCCceeeEEecCCcccCccCC
Q 040418 187 GYYGDHFVNLTLISGRPMQVWVEYDGLEKRTNVTLAPINIPKPRLPLLSLSRDLSSVLNDAMY 249 (249)
Q Consensus 187 ~~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~l~e~vy 249 (249)
.. ..++|.+|+.|+|||+||+.+++|+|+|+..+..||..|+|++++||+++|||+||
T Consensus 154 ~~-----~~~~l~~g~~~~v~I~Y~~~~~~L~V~l~~~~~~~~~~~~ls~~vdL~~~l~~~~~ 211 (236)
T cd06899 154 DD-----DGGKLKSGKPMQAWIDYDSSSKRLSVTLAYSGVAKPKKPLLSYPVDLSKVLPEEVY 211 (236)
T ss_pred cc-----ccccccCCCeEEEEEEEcCCCCEEEEEEEeCCCCCCcCCEEEEeccHHHhCCCceE
Confidence 31 24458899999999999999999999999887668999999999999999999986
No 2
>PF00139 Lectin_legB: Legume lectin domain; InterPro: IPR001220 Legume lectins are one of the largest lectin families with more than 70 lectins reported. Leguminous plant lectins resemble each other in their physicochemical properties although they differ in their carbohydrate specificities. They consist of two or four subunits with relative molecular mass of 30 kDa and each subunit has one carbohydrate-binding site. The interaction with sugars requires tightly bound calcium and manganese ions. The structural similarities of these lectins are reported by the primary structural analyses and X-ray crystallographic studies. X-ray studies have shown that the folding of the polypeptide chains in the region of the carbohydrate-binding sites is also similar, despite differences in the primary sequences. The carbohydrate-binding sites of these lectins consist of two conserved amino acids on beta pleated sheets. One of these loops contains transition metals, calcium and manganese, which keep the amino acid residues of the sugar-binding site at the required positions. Amino acid sequences of this loop play an important role in the carbohydrate-binding specificities of these lectins. These lectins bind either glucose/mannose or galactose. The exact function of legume lectins is not known but they may be involved in the attachment of nitrogen-fixing bacteria to legumes and in the protection against pathogens. Some legume lectins are proteolytically processed to produce two chains, beta (which corresponds to the N-terminal) and alpha (C-terminal) (IPR000985 from INTERPRO). The lectin concanavalin A (conA) from jack bean is exceptional in that the two chains are transposed and ligated (by formation of a new peptide bond). The N terminus of mature conA thus corresponds to that of the alpha chain and the C terminus to the beta chain.; GO: 0005488 binding; PDB: 1VLN_B 2GDF_C 2JE9_C 2JEC_C 1DGL_B 2P37_B 2CWM_A 2P34_D 2OW4_A 3IPV_B ....
Probab=100.00 E-value=4e-51 Score=359.30 Aligned_cols=210 Identities=44% Similarity=0.713 Sum_probs=182.1
Q ss_pred ceEEeCCC-CCCCeEEeeceEECcCCeEEccCCCC-CeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeecc-
Q 040418 31 PSFIYNGF-RSANLSLDGIAQFTSNGLLKLTNETK-GQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEF- 107 (249)
Q Consensus 31 ~sF~f~~F-~~~~l~l~G~A~~~~~g~l~LT~~~~-~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~- 107 (249)
++|+|++| +..+++++|+|.+..+|+|+||++.. +|+|||||++||+|||+. ++.++||+|+|+|+|....
T Consensus 2 ~~F~~~~F~~~~~~~l~G~A~~~~~~~l~LT~~~~~~~~G~~~y~~pi~l~d~~------~~~~~sF~t~F~f~i~~~~~ 75 (236)
T PF00139_consen 2 VSFSFPSFSNSSNLTLNGDASISSNGSLQLTPDSTNNQAGRAWYNNPIQLWDST------TGNVASFSTSFSFSITNGPG 75 (236)
T ss_dssp EEEEESSBTTGTTEEEEETEEEETTSEEESSTBETSSEEEEEEESSEEESBETT------TTEBEEEEEEEEEEEEESSS
T ss_pred ceEEcCCCCCCCceEEEeeEEeccCCeEEcCCCCCCCcEEEEEECCcEEEeCCC------CcceeeeeeEEEEEEeccCC
Confidence 58999999 46999999999985589999999987 999999999999999987 8889999999999996431
Q ss_pred ccCccccceEEEEccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcCCCcccccccCC
Q 040418 108 HTTLSAHGIAFVIAPTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDINSLKSEISYPAG 187 (249)
Q Consensus 108 ~~~~~gdGlAFvl~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvns~~S~~t~~~~ 187 (249)
+...+||||||||+|....+.++.|++||+.+..+.+...+++||||||||+|.+++||+.+||||++|++.+..+.+++
T Consensus 76 ~~~~~~dGlAFvi~~~~~~~~~~~g~~lG~~~~~~~~~~~~~~vAVEFDT~~N~~~~d~~~nHIgI~~n~~~s~~~~~~~ 155 (236)
T PF00139_consen 76 SSNNGGDGLAFVIQPDPNLPGGSSGGYLGLFNSSTDGNGINNSVAVEFDTYKNPEYNDPDDNHIGIDVNSVVSNKTASAG 155 (236)
T ss_dssp SSSS-BEEEEEEEEETTSSTTTSSGGGTTTSSSSSTTGGGGCEEEEEEETSTCGGGTTTSSSEEEEEESSSSESEEEE--
T ss_pred CCccCCCceEEEEecCcccccCCCCCccCccccccCCCccCcEEEEEEeeeecccccccCCCEEEEECCCCccccccccc
Confidence 46779999999999988767778999999998776666678999999999999988999999999999999998886654
Q ss_pred ccCCCcccccccCCcceEEEEEEeCCCcEEEEEEeeCCCCCCCCceeeEEecCCcccCccCC
Q 040418 188 YYGDHFVNLTLISGRPMQVWVEYDGLEKRTNVTLAPINIPKPRLPLLSLSRDLSSVLNDAMY 249 (249)
Q Consensus 188 ~~~~~~~~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~l~e~vy 249 (249)
++ .....++.+|+.|+|||+||+.+++|+|+|+... .||..|+|++.|||+++|+++||
T Consensus 156 ~~--~~~~~~l~~g~~~~v~I~Yd~~~~~L~V~l~~~~-~~~~~~~l~~~vdL~~~l~~~v~ 214 (236)
T PF00139_consen 156 YY--SSPSFSLSDGKWHTVWIDYDASTKRLSVYLDDNS-SKPSSPVLSVNVDLSAVLPEQVY 214 (236)
T ss_dssp ----EEEEHHHGTTSEEEEEEEEETTTTEEEEEEEETT-TTSEEEEEEEE--HHHHSCSEEE
T ss_pred cc--ccccccccCCcEEEEEEEEcCCccEEEEEEeccc-CCCcceeEEEEEchHHhcCCCcE
Confidence 33 1346789999999999999999999999999874 58999999999999999999987
No 3
>cd01951 lectin_L-type legume lectins. The L-type (legume-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. This family includes arcelin, concanavalinA, the lectin-like receptor kinases, the ERGIC-53/VIP36/EMP46 type1 transmembrane proteins, and an alpha-amylase inhibitor. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Probab=100.00 E-value=2e-36 Score=263.35 Aligned_cols=183 Identities=29% Similarity=0.362 Sum_probs=148.6
Q ss_pred CCCeEEeeceEECc-CCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEE
Q 040418 40 SANLSLDGIAQFTS-NGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAF 118 (249)
Q Consensus 40 ~~~l~l~G~A~~~~-~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAF 118 (249)
..++.++|+|.+.. ++.|+||++..+++||+||++||++|. +|+|+|+|+|... ...+||||||
T Consensus 13 ~~~~~~~G~A~~~~~~~~l~Lt~~~~~~~G~~~~~~~i~~~~-------------~F~~~F~f~i~~~--~~~~gdG~aF 77 (223)
T cd01951 13 QSNWQLNGSATLTTDSGVLRLTPDTGNQAGSAWYKTPIDLSK-------------DFTTTFKFYLGTK--GTNGADGIAF 77 (223)
T ss_pred hhhcEEcccEEecCCCCEEEECCCCCCcEEEEEECCcEeccC-------------CEEEEEEEEEeCC--CCCCCCcEEE
Confidence 37899999999964 789999999999999999999999982 8999999999975 3568999999
Q ss_pred EEccCCCCCCCCCC--CcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcCCCcccc--cccCCccCCCcc
Q 040418 119 VIAPTRGLPGARPS--QYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDINSLKSEI--SYPAGYYGDHFV 194 (249)
Q Consensus 119 vl~p~~~~p~~s~G--g~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvns~~S~~--t~~~~~~~~~~~ 194 (249)
+|+|....+.+..| ++||+. ..++.+|||||||+|.+++||+.+||||++|+..+.. ......+. .
T Consensus 78 ~l~~~~~~~~~~~g~~~~lG~~-------~~~~~~aVefDT~~N~~~~dp~~~higi~~n~~~~~~~~~~~~~~~~---~ 147 (223)
T cd01951 78 VLQNDPAGALGGGGGGGGLGYG-------GIGNSVAVEFDTYKNDDNNDPNGNHISIDVNGNGNNTALATSLGSAS---L 147 (223)
T ss_pred EEecCCCCccccCCCCCccCcc-------ccCCeEEEEEeccccCCCCCCCCCEEEEEcCCCCCCcccccccceee---C
Confidence 99998654444444 788873 3468999999999999888999999999999987541 11111110 1
Q ss_pred cccccCCcceEEEEEEeCCCcEEEEEEeeCCCCCCCCceeeEEecCCcccCccCC
Q 040418 195 NLTLISGRPMQVWVEYDGLEKRTNVTLAPINIPKPRLPLLSLSRDLSSVLNDAMY 249 (249)
Q Consensus 195 ~~~l~~G~~~~v~I~Yd~~~~~L~V~l~~~~~~~p~~p~ls~~vdLs~~l~e~vy 249 (249)
......|+.|+|||+|++.+++|+|+|..... |..|+++.++||+.+++++||
T Consensus 148 ~~~~~~g~~~~v~I~Y~~~~~~L~v~l~~~~~--~~~~~l~~~~~l~~~~~~~~y 200 (223)
T cd01951 148 PNGTGLGNEHTVRITYDPTTNTLTVYLDNGST--LTSLDITIPVDLIQLGPTKAY 200 (223)
T ss_pred CCccCCCCEEEEEEEEeCCCCEEEEEECCCCc--cccccEEEeeeecccCCCcEE
Confidence 11222389999999999999999999987653 677899999999999999986
No 4
>cd07308 lectin_leg-like legume-like lectins: ERGIC-53, ERGL, VIP36, VIPL, EMP46, and EMP47. The legume-like (leg-like) lectins are eukaryotic intracellular sugar transport proteins with a carbohydrate recognition domain similar to that of the legume lectins. This domain binds high-mannose-type oligosaccharides for transport from the endoplasmic reticulum to the Golgi complex. These leg-like lectins include ERGIC-53, ERGL, VIP36, VIPL, EMP46, EMP47, and the UIP5 (ULP1-interacting protein 5) precursor protein. Leg-like lectins have different intracellular distributions and dynamics in the endoplasmic reticulum-Golgi system of the secretory pathway and interact with N-glycans of glycoproteins in a calcium-dependent manner, suggesting a role in glycoprotein sorting and trafficking. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "ba
Probab=99.79 E-value=1.9e-17 Score=143.89 Aligned_cols=146 Identities=22% Similarity=0.300 Sum_probs=106.4
Q ss_pred CCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEE
Q 040418 41 ANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVI 120 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl 120 (249)
.++.+.|+|.+. ++.|+||++..++.|++||+.|+++. +|+++|+|+|... ...+||||||+|
T Consensus 20 ~~w~~~G~a~~~-~~~i~LT~~~~~~~G~~~~~~pi~~~--------------~F~~~f~F~i~~~--~~~~gdG~af~~ 82 (218)
T cd07308 20 GNWTVGGSTVIT-KNYIRLTPDVPSQSGSLWSRVPIPAK--------------DFEIEVEFSIHGG--SGLGGDGFAFWY 82 (218)
T ss_pred CCeEEcCCeEEe-CCEEEeCCCCCCCEeEEEeCCCccCC--------------CEEEEEEEEEeCC--CCCCCCEEEEEE
Confidence 689999999997 89999999999999999999999973 7999999999875 356899999999
Q ss_pred ccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcC-CCcccc------cccCCccCCCc
Q 040418 121 APTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDIN-SLKSEI------SYPAGYYGDHF 193 (249)
Q Consensus 121 ~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvn-s~~S~~------t~~~~~~~~~~ 193 (249)
+|... ..|..+|.-+ ..+-+||||||++|. +-..++|.+.+| +..+.. ....+ .
T Consensus 83 ~~~~~----~~g~~~G~~~-------~~~Glai~fdt~~n~---~~~~p~i~~~~Ndg~~~~~~~~d~~~~~~~-----~ 143 (218)
T cd07308 83 TEEPG----SDGPLFGGPD-------KFKGLAIFFDTYDND---GKGFPSISVFLNDGTKSYDYETDGEKLELA-----S 143 (218)
T ss_pred ECCCC----CCCcccccCC-------CCCEEEEEEEcCCCC---CCCCCeEEEEEeCCCceecccCCCcccccc-----c
Confidence 98642 2455566532 357899999999985 233456666554 222211 01110 0
Q ss_pred ccccccC-CcceEEEEEEeCCCcEEEEEEeeC
Q 040418 194 VNLTLIS-GRPMQVWVEYDGLEKRTNVTLAPI 224 (249)
Q Consensus 194 ~~~~l~~-G~~~~v~I~Yd~~~~~L~V~l~~~ 224 (249)
......+ +++.+++|.|+ .+.|.|.+...
T Consensus 144 c~~~~~~~~~~~~~~I~y~--~~~l~v~i~~~ 173 (218)
T cd07308 144 CSLKFRNSNAPTTLRISYL--NNTLKVDITYS 173 (218)
T ss_pred eeEecccCCCCeEEEEEEE--CCEEEEEEeCC
Confidence 0112222 67899999999 67899999753
No 5
>cd06901 lectin_VIP36_VIPL VIP36 and VIPL type 1 transmembrane proteins, lectin domain. The vesicular integral protein of 36 kDa (VIP36) is a type 1 transmembrane protein of the mammalian early secretory pathway that acts as a cargo receptor transporting high mannose type glycoproteins between the Golgi and the endoplasmic reticulum (ER). Lectins of the early secretory pathway are involved in the selective transport of newly synthesized glycoproteins from the ER to the ER-Golgi intermediate compartment (ERGIC). The most prominent cycling lectin is the mannose-binding type1 membrane protein ERGIC-53, which functions as a cargo receptor to facilitate export of glycoproteins from the ER. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerizes so that adjacent back sheets form a contiguous 12-stranded she
Probab=99.49 E-value=4.5e-12 Score=112.68 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=100.2
Q ss_pred CCCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEE
Q 040418 40 SANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFV 119 (249)
Q Consensus 40 ~~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFv 119 (249)
..++.+.|+|.+. ++.||||++..++.|++||+.|+++. +|+++|+|+|.+. ....+||||||.
T Consensus 19 i~~w~~~G~a~v~-~~~IrLTp~~~~~~G~~w~~~p~~~~--------------~F~~~f~F~I~~~-~~~~~GdGlAfw 82 (248)
T cd06901 19 MPLWDFLGSTMVT-SQYIRLTPDHQSKQGSIWNRVPCYLR--------------DWEMHVHFKVHGS-GKNLFGDGFAIW 82 (248)
T ss_pred CCCEEEcceEEEc-CCeEEECCCCCCCEEEEeccCCccCC--------------CEEEEEEEEEeCC-CCCCCCCEEEEE
Confidence 4789999999997 78999999988899999999999983 7999999999986 445689999999
Q ss_pred EccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCC-CCCCCCeeEEEcC-CCccccc------ccCCccCC
Q 040418 120 IAPTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEF-SDINDNHVGIDIN-SLKSEIS------YPAGYYGD 191 (249)
Q Consensus 120 l~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~-~Dp~~nHVgIdvn-s~~S~~t------~~~~~~~~ 191 (249)
++.... ..|..+|-.+ .-.=+||-|||+.|..- -....+-|.+-+| +...... ..++.-
T Consensus 83 ~t~~~~----~~G~~fG~~~-------~f~Gl~I~~Dt~~n~~~~~~~~~P~i~~~~NDGt~~yd~~~Dg~~~~~~~C-- 149 (248)
T cd06901 83 YTKERM----QPGPVFGSKD-------NFHGLAIFFDTYSNQNGEHEHVHPYISAMVNNGSLSYDHDRDGTHTELAGC-- 149 (248)
T ss_pred EEcCCC----ccCcccccCC-------CCceEEEEEECCCCCCCcccCCCceEEEEEcCCCeeecccCCCchhhcCce--
Confidence 998642 3344445422 12458999999998631 0112233444333 3222110 001000
Q ss_pred Ccccccc-cCCcceEEEEEEeCCCcEEEEEEeeC
Q 040418 192 HFVNLTL-ISGRPMQVWVEYDGLEKRTNVTLAPI 224 (249)
Q Consensus 192 ~~~~~~l-~~G~~~~v~I~Yd~~~~~L~V~l~~~ 224 (249)
.... +.+.+-.++|.|... .|+|.++..
T Consensus 150 ---~~~~rn~~~~t~~rI~Y~~~--~l~v~vd~~ 178 (248)
T cd06901 150 ---SAPFRNKDHDTFVAIRYSKG--RLTVMTDID 178 (248)
T ss_pred ---eeeccCCCCCeEEEEEEECC--eEEEEEecC
Confidence 0111 234557899999974 577777643
No 6
>cd06902 lectin_ERGIC-53_ERGL ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain. ERGIC-53 and ERGL, N-terminal carbohydrate recognition domain. ERGIC-53 and ERGL are eukaryotic mannose-binding type 1 transmembrane proteins of the early secretory pathway that transport newly synthesized glycoproteins from the endoplasmic reticulum (ER) to the ER-Golgi intermediate compartment (ERGIC). ERGIC-53 and ERGL have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. ERGIC-53 functions as a 'cargo receptor' to facilitate the export of glycoproteins with different characteristics from the ER, while the ERGIC-53-like protein (ERGL) which may act as a regulator of ERGIC-53. In mammals, ERGIC-53 forms a complex with MCFD2 (multi-coagulation factor deficiency 2) which then recruits blood coagulation factors V and VIII. Mutations in either MCFD2 or ERGIC-53 cause a mild form of inherite
Probab=99.37 E-value=1.3e-10 Score=101.97 Aligned_cols=151 Identities=17% Similarity=0.188 Sum_probs=102.6
Q ss_pred CCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEE
Q 040418 41 ANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVI 120 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl 120 (249)
..+.+.|+|.+. ++.||||++.+++.|.+|.+.|++.. +|+.+|+|+|... ...+||||||.+
T Consensus 22 ~~W~~~G~t~~~-~~~IrLTp~~~~~~G~iw~~~~~~~~--------------~w~ie~~Fri~g~--~~~~gdG~a~W~ 84 (225)
T cd06902 22 PFWSHGGDAIAS-LEQVRLTPSLRSKKGSVWTKNPFSFE--------------NWEVEVTFRVTGR--GRIGADGLAIWY 84 (225)
T ss_pred CceEecccEEec-CCEEEECCCCCCCEEEEeeCCCcCCC--------------CEEEEEEEEEecC--CCCCCCEEEEEE
Confidence 689999999886 88999999999999999999999832 7999999999875 345789999999
Q ss_pred ccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcC-CCcccccccCCccCCCcc-cccc
Q 040418 121 APTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDIN-SLKSEISYPAGYYGDHFV-NLTL 198 (249)
Q Consensus 121 ~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvn-s~~S~~t~~~~~~~~~~~-~~~l 198 (249)
+.... ..|+.+|..+ .-.-+||.|||+.|.+ ....++|.+-.| +........-........ ....
T Consensus 85 t~~~~----~~G~~~G~~~-------~f~Gl~I~~Dt~~n~~--~~~~p~i~~~~NDGt~~yd~~~D~~~~~~~~C~~~~ 151 (225)
T cd06902 85 TKERG----EEGPVFGSSD-------KWNGVGIFFDSFDNDG--KKNNPAILVVGNDGTKSYDHQNDGLTQALGSCLRDF 151 (225)
T ss_pred ECCCC----CCCCccCCCC-------cccEEEEEEECCCCCC--CCCCcEEEEEECCCCeeccccCCCcccccceEEEec
Confidence 97642 2455566533 2346899999998852 233456766554 322211110000000000 0122
Q ss_pred -cCCcceEEEEEEeCCCcEEEEEEee
Q 040418 199 -ISGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 199 -~~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
+...+.+++|.|.. +.|+|.++.
T Consensus 152 rn~~~p~~~rI~Y~~--~~l~V~~d~ 175 (225)
T cd06902 152 RNKPYPVRAKITYYQ--NVLTVSINN 175 (225)
T ss_pred cCCCCCeEEEEEEEC--CeEEEEEeC
Confidence 23467899999998 469998874
No 7
>cd06903 lectin_EMP46_EMP47 EMP46 and EMP47 type 1 transmembrane proteins, N-terminal lectin domain. EMP46 and EMP47, N-terminal carbohydrate recognition domain. EMP46 and EMP47 are fungal type-I transmembrane proteins that cycle between the endoplasmic reticulum and the golgi apparatus and are thought to function as cargo receptors that transport newly synthesized glycoproteins. EMP47 is a receptor for EMP46 responsible for the selective transport of EMP46 by forming hetero-oligomerization between the two proteins. EMP46 and EMP47 have an N-terminal lectin-like carbohydrate recognition domain (represented by this alignment model) as well as a C-terminal transmembrane domain. EMP46 and EMP47 are 45% sequence-identical to one another and have sequence homology to a class of intracellular lectins defined by ERGIC-53 and VIP36. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat s
Probab=99.15 E-value=3.5e-09 Score=92.29 Aligned_cols=145 Identities=16% Similarity=0.182 Sum_probs=98.8
Q ss_pred CCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEE
Q 040418 41 ANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVI 120 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl 120 (249)
.++.+.|+|.+. ++.||||++ +++.|.+|-+.|+++.+ +|+.+|+|+|+.. ...+||||||-+
T Consensus 21 ~~W~~~G~t~v~-~~~IrLTp~-~s~~G~iWs~~pl~~~~-------------~w~ie~~Fri~G~--~~~~gdGla~W~ 83 (215)
T cd06903 21 PNWQTSGNPKLE-SGRIILTPP-GNQRGSLWLKKPLSLKD-------------EWTIEWTFRSTGP--EGRSGGGLNFWL 83 (215)
T ss_pred CCeEEcCcEEee-CCeEEECCC-CCceEeEeeCCcCCCCC-------------CEEEEEEEEeccc--CCcCCCEEEEEE
Confidence 689999999997 889999999 99999999999999742 6999999999875 336899999999
Q ss_pred ccCCCCCCCCCC-CcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEc-CCCccccccc-----CCccCCCc
Q 040418 121 APTRGLPGARPS-QYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDI-NSLKSEISYP-----AGYYGDHF 193 (249)
Q Consensus 121 ~p~~~~p~~s~G-g~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdv-ns~~S~~t~~-----~~~~~~~~ 193 (249)
....... .| ..+|-.+ .-.=+||.|||+.|. . ..|.+-+ ++........ ++.=
T Consensus 84 t~~~~~~---~g~~~fG~~~-------~f~Gl~I~~Dt~~n~---~---p~i~~~~NDGt~~yd~~~d~~~~~g~C---- 143 (215)
T cd06903 84 VKDGNAD---VGTSSIYGPS-------KFDGLQLLIDNNGGS---G---GSLRGFLNDGSKDYKNEDVDSLAFGSC---- 143 (215)
T ss_pred ECCCccc---CCccccCCCC-------CCcEEEEEEECCCCC---C---ceEEEEECCCCeeccccCCccccccee----
Confidence 9754211 11 2222211 123489999999874 1 2333333 3332211111 1100
Q ss_pred ccc-cccCCcceEEEEEEeCCCcEEEEEEee
Q 040418 194 VNL-TLISGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 194 ~~~-~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
.. -.+.+.+.+++|.|....+.|+|.++.
T Consensus 144 -~~~~rn~~~p~~iri~Y~~~~~~l~v~vd~ 173 (215)
T cd06903 144 -LFAYQDSGVPSTIRLSYDALNSLFKVQVDN 173 (215)
T ss_pred -eEeccCCCCCEEEEEEEECCCCEEEEEECC
Confidence 01 134566899999999977889998864
No 8
>PF03388 Lectin_leg-like: Legume-like lectin family; InterPro: IPR005052 Lectins are structurally diverse proteins that bind to specific carbohydrates. This family includes the VIP36 and ERGIC-53 lectins. These two proteins were the first members of the family of animal lectins similar to the leguminous plant lectins []. The alignment for this family is towards the N terminus, where the similarity of VIP36 and ERGIC-53 is greatest. Although they have been identified as a family of animal lectins, this alignment also includes yeast sequences[]. ERGIC-53 is a 53kDa protein, localised to the intermediate region between the endoplasmic reticulum and the Golgi apparatus (ER-Golgi-Intermediate Compartment, ERGIC). It was identified as a calcium-dependent, mannose-specific lectin []. Its dysfunction has been associated with combined factors V and VIII deficiency, suggesting an important and substrate-specific role for ERGIC-53 in the glycoprotein-secreting pathway [,]. The L-type lectin-like domain has an overall globular shape composed of a beta-sandwich of two major twisted antiparallel beta-sheets. The beta-sandwich comprises a major concave beta-sheet and a minor convex beta-sheet, in a variation of the jelly roll fold [, , , ]. ; GO: 0016020 membrane; PDB: 3A4U_A 3LCP_B 2A6Z_A 2A71_C 2A70_B 2A6Y_A 2A6X_A 2A6W_B 2A6V_B 2E6V_B ....
Probab=98.93 E-value=6.5e-08 Score=85.04 Aligned_cols=153 Identities=21% Similarity=0.315 Sum_probs=94.5
Q ss_pred CCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEE
Q 040418 41 ANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVI 120 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl 120 (249)
..+.+.|+|.+. ++.||||++.+++.|.+|.+.|++.. .|+.+|+|+|... ....+||||||-+
T Consensus 22 ~~W~~~G~t~i~-~~~IrLTp~~~~~~G~iws~~~~~~~--------------~w~i~~~Fri~g~-~~~~~g~G~a~W~ 85 (229)
T PF03388_consen 22 PNWDIGGSTVIT-DNFIRLTPDRQSQSGSIWSRKPIPFD--------------NWEIEFTFRISGQ-EKGLGGDGMAFWY 85 (229)
T ss_dssp TTEEEEET-EEE-SSEEEEE-SSTTEEEEEEESS-BEES--------------EEEEEEEEEEESS--SSS-S-EEEEEE
T ss_pred CCEEECCeEEec-CCEEEECCCcccCEEEEEEcCCCCcc--------------CEEEEEEEEEecc-ccCcCCCeEEEEE
Confidence 579999999987 89999999999999999999999972 7999999999876 3455899999999
Q ss_pred ccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCC-CCCCCeeEEEcC-CCcccccccCCccCCCcc--cc
Q 040418 121 APTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFS-DINDNHVGIDIN-SLKSEISYPAGYYGDHFV--NL 196 (249)
Q Consensus 121 ~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~-Dp~~nHVgIdvn-s~~S~~t~~~~~~~~~~~--~~ 196 (249)
..... ..|..+|..+ .-.=++|=||||.|.+-. .-....|.+.+| +........-+. ..... ..
T Consensus 86 t~~~~----~~G~~fG~~~-------~f~Gl~i~idt~~N~~~~~~~~~p~i~~~~NDGt~~~~~~~dg~-~~~~~~C~~ 153 (229)
T PF03388_consen 86 TKDPG----SDGPVFGGPD-------KFDGLGIFIDTYDNDEGGHKRGFPYISAMLNDGTKSYDHDNDGK-DQSLGSCSA 153 (229)
T ss_dssp ESSSS----SSCSBTTB-S-------S-EEEEEEEEES-TTCTTCTSTSSEEEEEEEESSS---GGGTTT-TT-SEEEE-
T ss_pred EcCcc----ccccccCCCc-------ccceEEEEEEcccCCCcccccccceEEEEecCCCccccccccCc-cccccccee
Confidence 97542 2555556422 124589999999986311 112355655554 222111110000 00000 11
Q ss_pred ccc-CCcceEEEEEEeCCCcEEEEEEee
Q 040418 197 TLI-SGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 197 ~l~-~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
... .+.+.+++|.|... .|.|.++.
T Consensus 154 ~~rn~~~p~~~ri~Y~~~--~l~v~id~ 179 (229)
T PF03388_consen 154 DYRNSDVPTRIRISYSKN--TLTVSIDS 179 (229)
T ss_dssp --BTESSEEEEEEEEETT--EEEEEEET
T ss_pred ccCcCCCCEEEEEEEECC--eEEEEEec
Confidence 222 34567899999985 67777763
No 9
>cd06900 lectin_VcfQ VcfQ bacterial pilus biogenesis protein, lectin domain. This family includes bacterial proteins homologous to the VcfQ (also known as MshQ) bacterial pilus biogenesis protein. VcfQ is encoded by the vcfQ gene of the type IV pilus gene cluster of Vibrio cholerae and is essential for type IV pilus assembly. VcfQ has a Laminin G-like domain as well as an L-type lectin domain.
Probab=98.44 E-value=1.8e-06 Score=75.99 Aligned_cols=94 Identities=18% Similarity=0.198 Sum_probs=72.2
Q ss_pred CCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEEccCCC-CCCCCCC
Q 040418 54 NGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVIAPTRG-LPGARPS 132 (249)
Q Consensus 54 ~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl~p~~~-~p~~s~G 132 (249)
+|.||||++..+|+|.+.|.++++--+. ....+|.+..... ...+||||||||.-..- +..+..|
T Consensus 31 ~g~LRLT~~~~nqata~~~~~~FPs~~n------------~v~veFd~yayg~--~g~GADGia~vLsDasv~p~~G~fG 96 (255)
T cd06900 31 NNRLRLTDASGNQATAVTLQRLFPSAGN------------YVEVEFDYYAYGS--GGNGADGVALVLSDASVTPQAGAFG 96 (255)
T ss_pred cCeEEeccCccCcceeEEEeeeeccCCC------------eEEEEEEEEEecC--CCCCCceEEEEEeCCCcCCcCCCcC
Confidence 7999999999999999999999985321 3678888877763 56799999999995432 2347789
Q ss_pred CcccCCcCC-CCCCCCCcEEEEEEecCccC
Q 040418 133 QYLGLFNES-NLGNETNHVFAVELDTIENH 161 (249)
Q Consensus 133 g~LGl~n~~-~~~~~~~~~vAVEFDT~~n~ 161 (249)
|.|||.-.. ...+.....+.|-||-|-|.
T Consensus 97 GsLGYa~~~~~~~GfaGGwLGiGlDEyGNF 126 (255)
T cd06900 97 GSLGYAQRNDGVPGFAGGWLGIGLDEYGNF 126 (255)
T ss_pred cccccccccCCCCccccceEEEEEeccccc
Confidence 999997654 22234456899999998774
No 10
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0027 Score=59.52 Aligned_cols=152 Identities=15% Similarity=0.212 Sum_probs=95.2
Q ss_pred CeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEEc
Q 040418 42 NLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVIA 121 (249)
Q Consensus 42 ~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl~ 121 (249)
-+...|||-.+ ...|||++.-.++.|.||-+..+++- -|..+-+|+|... ...+|||||+--.
T Consensus 55 FW~~~GdAIas-~eqvRlaPSmrsrkGavWtka~~~fe--------------~weVev~~rVtGr--GRiGAdGlaiWYt 117 (497)
T KOG3838|consen 55 FWSHHGDAIAS-SEQVRLAPSMRSRKGAVWTKASVPFE--------------NWEVEVQFRVTGR--GRIGADGLAIWYT 117 (497)
T ss_pred eeeecCccccc-ccceeeccccccccCceeecccCCcc--------------cceEEEEEEeccc--ccccCCceEEEEe
Confidence 37788999654 77999999999999999999877753 4788889999985 6779999999877
Q ss_pred cCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcCC-CcccccccCCccCCCcc-ccccc
Q 040418 122 PTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDINS-LKSEISYPAGYYGDHFV-NLTLI 199 (249)
Q Consensus 122 p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvns-~~S~~t~~~~~~~~~~~-~~~l~ 199 (249)
... |--|.-+|=.. .=.-+++=||.+-|+ +.-++.-|.+-.|. ..+.--..=+.-..... --+..
T Consensus 118 ~~~----G~~GpVfGg~d-------~WnGigiffDSfdnD--~qknnP~Is~~lndGt~~ydh~~DGasQ~LssCqrDFR 184 (497)
T KOG3838|consen 118 RGR----GHVGPVFGGLD-------SWNGIGIFFDSFDND--GQKNNPAISVLLNDGTIPYDHPGDGASQGLSSCQRDFR 184 (497)
T ss_pred cCC----Ccccccccccc-------cccceEEEeeccccc--CCcCCccEEEEecCCcccccCCCccHHHHHHHhhHHhc
Confidence 532 12232233211 112468999999886 33455667776653 22110000000000000 01222
Q ss_pred C-CcceEEEEEEeCCCcEEEEEEeeCC
Q 040418 200 S-GRPMQVWVEYDGLEKRTNVTLAPIN 225 (249)
Q Consensus 200 ~-G~~~~v~I~Yd~~~~~L~V~l~~~~ 225 (249)
+ --+..++|+|-. ++|+|-+...=
T Consensus 185 NkPyPvRarItY~~--nvLtv~innGm 209 (497)
T KOG3838|consen 185 NKPYPVRARITYYG--NVLTVMINNGM 209 (497)
T ss_pred cCCCCceEEEEEec--cEEEEEEcCCC
Confidence 2 236789999987 58999987643
No 11
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0024 Score=58.69 Aligned_cols=94 Identities=22% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCeEEeeceEECcCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEEEE
Q 040418 41 ANLSLDGIAQFTSNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAFVI 120 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAFvl 120 (249)
.++.+.|...+. ..-||||.+.+++.|.+|-.+||-.. .|+..+.|++... ...--|||||+.+
T Consensus 72 ~~W~~~Gstvv~-~~~irLT~d~qsk~GAv~n~~Pv~s~--------------~wev~v~fkv~~~-s~~lfgdG~Aiw~ 135 (351)
T KOG3839|consen 72 PNWNLSGSTVVT-SNYIRLTPDEQSKSGAVWNRQPVFSR--------------DWEVLVHFKVHGQ-SKNLFGDGMAIWY 135 (351)
T ss_pred cCccccccEEEE-eeeeeccccccccccccccCCCcccc--------------ceeEEEEEEEecC-CCcccccceEEEe
Confidence 578999999886 77899999999999999999999853 6999999999987 5566899999999
Q ss_pred ccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccC
Q 040418 121 APTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENH 161 (249)
Q Consensus 121 ~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~ 161 (249)
.-.... .|..+|-+.. -+-+||=.|||.|.
T Consensus 136 t~Er~q----~GPvFG~~dk-------F~GL~vfidtY~n~ 165 (351)
T KOG3839|consen 136 TKERAQ----PGPVFGSKDK-------FTGLAVFIDTYGNH 165 (351)
T ss_pred eccccc----CCCCCCCccc-------ceeEEEEEeccCCc
Confidence 875432 5556665432 24589999999886
No 12
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=80.73 E-value=1.4 Score=33.65 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=11.1
Q ss_pred CCCcchHHHHHHHHHHHHH
Q 040418 1 MAFKLPILLVSLLMIIIII 19 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (249)
||+|..++|..||.++||+
T Consensus 1 MaSK~~llL~l~LA~lLli 19 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLI 19 (95)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 8999855555444444443
No 13
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=62.06 E-value=49 Score=35.70 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=76.9
Q ss_pred CCeEEeeceEEC--cCCeEEccCCCCCeEEEEEecCceeccCCCCCCCCCCCeeeeEEEEEEEEEeeccccCccccceEE
Q 040418 41 ANLSLDGIAQFT--SNGLLKLTNETKGQIGHAFYPAPIPFKNNNSNSSTANGTVFSFSTTFVFSILSEFHTTLSAHGIAF 118 (249)
Q Consensus 41 ~~l~l~G~A~~~--~~g~l~LT~~~~~~~Grv~y~~Pv~l~d~~~~~~~~t~~~asFsT~F~F~I~~~~~~~~~gdGlAF 118 (249)
+.|.|+|...+. .+|-++|..-....-+|++-..|+.++.+.+--+ ...-.+.|+.+|-|+.... ..|||-
T Consensus 804 ~~LvFNG~~Yld~~K~~~~~ls~l~a~fkl~~iv~~paTf~sk~Sy~~-la~L~ay~s~~l~Fqfkt~-----sp~gll- 876 (1591)
T KOG3514|consen 804 SGLVFNGQDYLDKCKMGDIQLSELSARFKLRAIVADPATFKSKSSYVK-LATLQAYFSMHLFFQFKTT-----SPDGLL- 876 (1591)
T ss_pred hheEECcHHHHHHHhcCCcchhhcchhhCceEEeeccceeeechhhhh-hhhhheeeEEEEEEEEeec-----CCCeEE-
Confidence 679999988774 3577888776656678888889998875431111 1122357777777777654 455542
Q ss_pred EEccCCCCCCCCCCCcccCCcCCCCCCCCCcEEEEEEecCccCCCCCCCCCeeEEEcC-CCcccccccCCccCCCccccc
Q 040418 119 VIAPTRGLPGARPSQYLGLFNESNLGNETNHVFAVELDTIENHEFSDINDNHVGIDIN-SLKSEISYPAGYYGDHFVNLT 197 (249)
Q Consensus 119 vl~p~~~~p~~s~Gg~LGl~n~~~~~~~~~~~vAVEFDT~~n~~~~Dp~~nHVgIdvn-s~~S~~t~~~~~~~~~~~~~~ 197 (249)
+-+.+ .-|.++|||.--- +=|--.|.. +..+.+- .....
T Consensus 877 -~fn~g---------------------d~ndfi~velvnG---------~ihYtfdlg~gp~~~k~---------~sr~h 916 (1591)
T KOG3514|consen 877 -LFNSG---------------------DGNDFIAVELVNG---------YIHYTFDLGNGPTSMKG---------PSRQH 916 (1591)
T ss_pred -EecCC---------------------CCCceEEEEEeCc---------EEEEEEEcCCCcccccC---------cccCc
Confidence 22211 1257889986431 122233332 2111111 23567
Q ss_pred ccCCcceEEEEEEeCC-CcEEEE
Q 040418 198 LISGRPMQVWVEYDGL-EKRTNV 219 (249)
Q Consensus 198 l~~G~~~~v~I~Yd~~-~~~L~V 219 (249)
|+|.++|+|.|.=|.. ++.|.|
T Consensus 917 lnDnrWHnV~I~rd~~~~HtL~v 939 (1591)
T KOG3514|consen 917 LNDNRWHNVLIYRDKTNTHTLKV 939 (1591)
T ss_pred CccccceeEEEEcCCCCceEEEe
Confidence 8889999999988844 234443
No 14
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=48.07 E-value=19 Score=25.17 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=22.0
Q ss_pred CCCcchHHHHHHHHHHHHHHhhcccc--CCCCceEEeCCCC
Q 040418 1 MAFKLPILLVSLLMIIIIIITSSAAA--KDKNPSFIYNGFR 39 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~sF~f~~F~ 39 (249)
||.|+ ++.++||+.|+-++.+|.. .....+|+=..|+
T Consensus 1 MA~Kl--~vialLC~aLva~vQ~APQYa~GeeP~YDEdd~d 39 (65)
T PF10731_consen 1 MASKL--IVIALLCVALVAIVQSAPQYAPGEEPSYDEDDDD 39 (65)
T ss_pred Ccchh--hHHHHHHHHHHHHHhcCcccCCCCCCCcCcccCc
Confidence 66665 6777888877777766643 2333344444444
No 15
>smart00282 LamG Laminin G domain.
Probab=46.93 E-value=1.3e+02 Score=23.00 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=21.0
Q ss_pred ccccCCcceEEEEEEeCCCcEEEEEEee
Q 040418 196 LTLISGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 196 ~~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
..++||++|++.|.++.. .+.++|+.
T Consensus 57 ~~~~dg~WH~v~i~~~~~--~~~l~VD~ 82 (135)
T smart00282 57 TPLNDGQWHRVAVERNGR--RVTLSVDG 82 (135)
T ss_pred eEeCCCCEEEEEEEEeCC--EEEEEECC
Confidence 478899999999999864 67777764
No 16
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=44.20 E-value=1.5e+02 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=21.6
Q ss_pred cccCCcceEEEEEEeCCCcEEEEEEeeC
Q 040418 197 TLISGRPMQVWVEYDGLEKRTNVTLAPI 224 (249)
Q Consensus 197 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~~ 224 (249)
.++||++|++.|.++. +.+.++++..
T Consensus 76 ~v~dg~Wh~v~i~~~~--~~~~l~VD~~ 101 (151)
T cd00110 76 PLNDGQWHSVSVERNG--RSVTLSVDGE 101 (151)
T ss_pred ccCCCCEEEEEEEECC--CEEEEEECCc
Confidence 5889999999999997 5777777653
No 17
>PF13619 KTSC: KTSC domain
Probab=33.45 E-value=49 Score=22.55 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=16.8
Q ss_pred EEEEEEeCCCcEEEEEEeeC
Q 040418 205 QVWVEYDGLEKRTNVTLAPI 224 (249)
Q Consensus 205 ~v~I~Yd~~~~~L~V~l~~~ 224 (249)
...|.||..++.|+|.+...
T Consensus 6 I~~v~Yd~~~~~L~V~F~~G 25 (60)
T PF13619_consen 6 IRSVGYDPETRTLEVEFKSG 25 (60)
T ss_pred ccEEeECCCCCEEEEEEcCC
Confidence 34699999999999999654
No 18
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=32.59 E-value=64 Score=25.22 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.0
Q ss_pred CcceEEEEEEeCCCcEEEEEEee
Q 040418 201 GRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 201 G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
|+.+++.+.||+...+|++|++-
T Consensus 61 ~~W~hva~v~d~~~g~~~lYvnG 83 (133)
T smart00560 61 GVWVHLAGVYDGGAGKLSLYVNG 83 (133)
T ss_pred CCEEEEEEEEECCCCeEEEEECC
Confidence 78999999999998999999973
No 19
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=32.46 E-value=61 Score=27.62 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=24.5
Q ss_pred cccCCcceEEEEEEeCCCcEEEEEEee
Q 040418 197 TLISGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 197 ~l~~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
.+.+|+.|++-+.||+.+.++.+|++-
T Consensus 86 ~~~~g~W~hvc~tw~~~~g~~~lyvnG 112 (206)
T smart00159 86 PESDGKWHHICTTWESSSGIAELWVDG 112 (206)
T ss_pred cccCCceEEEEEEEECCCCcEEEEECC
Confidence 577899999999999999999999974
No 20
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=28.30 E-value=67 Score=21.16 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=14.8
Q ss_pred EEEEeCCCcEEEEEEe
Q 040418 207 WVEYDGLEKRTNVTLA 222 (249)
Q Consensus 207 ~I~Yd~~~~~L~V~l~ 222 (249)
||+||..+..|-+++.
T Consensus 2 ki~YD~~~D~lyi~l~ 17 (50)
T PF10049_consen 2 KIEYDPEADALYIRLS 17 (50)
T ss_pred EeEEcCcCCEEEEEEC
Confidence 7999999999999993
No 21
>PRK10894 lipopolysaccharide transport periplasmic protein LptA; Provisional
Probab=28.26 E-value=1.2e+02 Score=25.40 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=13.2
Q ss_pred CCeEEeeceEECcCCeEEccC
Q 040418 41 ANLSLDGIAQFTSNGLLKLTN 61 (249)
Q Consensus 41 ~~l~l~G~A~~~~~g~l~LT~ 61 (249)
...++.|++.+. .|..+|+.
T Consensus 46 ~~~~~tGnV~i~-QG~~~L~A 65 (180)
T PRK10894 46 NVVTFTGNVVVT-QGTIKINA 65 (180)
T ss_pred CEEEEEeeEEEE-ECceEEEe
Confidence 446778888776 56666653
No 22
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=28.18 E-value=78 Score=26.77 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=23.7
Q ss_pred ccCCcceEEEEEEeCCCcEEEEEEee
Q 040418 198 LISGRPMQVWVEYDGLEKRTNVTLAP 223 (249)
Q Consensus 198 l~~G~~~~v~I~Yd~~~~~L~V~l~~ 223 (249)
..+|+.|++-+.||+.+.++.+|++-
T Consensus 87 ~~~g~W~hv~~t~d~~~g~~~lyvnG 112 (201)
T cd00152 87 ESDGAWHHICVTWESTSGIAELWVNG 112 (201)
T ss_pred CCCCCEEEEEEEEECCCCcEEEEECC
Confidence 47899999999999999999999974
Done!