BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040419
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 6 GFRFYPTDEEI-IRLLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHSEIQSEEEVWYFFC 64
GFRFYPTDEE+ ++ L +K F + I EID Y F+PW LP + +E WYFF
Sbjct: 23 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 80
Query: 65 EPDYKYAKSRRVNRGTNEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHDSASKKAKTE 124
D KY R NR G WK TG I + + +G K+ L F A K KT
Sbjct: 81 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYI-GKAPKGTKTN 137
Query: 125 WVMHEIAVEDDPDYKK------DFVVCRLERKR 151
W+MHE + +P + D+V+CR+ +K+
Sbjct: 138 WIMHEYRL-IEPSRRNGSTKLDDWVLCRIYKKQ 169
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 79/153 (51%), Gaps = 13/153 (8%)
Query: 6 GFRFYPTDEEI-IRLLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHSEIQSEEEVWYFFC 64
GFRFYPTDEE+ ++ L +K F + I EID Y F+PW LP + +E WYFF
Sbjct: 20 GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKE--WYFFS 77
Query: 65 EPDYKYAKSRRVNRGTNEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHDSASKKAKTE 124
D KY R NR G WK TG I + + +G K+ L F A K KT
Sbjct: 78 PRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYI-GKAPKGTKTN 134
Query: 125 WVMHEIAVEDDPDYKK------DFVVCRLERKR 151
W+MHE + +P + D+V+CR+ +K+
Sbjct: 135 WIMHEYRL-IEPSRRNGSTKLDDWVLCRIYKKQ 166
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 89.7 bits (221), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 16/162 (9%)
Query: 1 MNSLVGFRFYPTDEEII-RLLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHSEIQSEEEV 59
+N GFRF+PTD+E++ L +K V I E+D Y F+PW+LP + + E
Sbjct: 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE-- 70
Query: 60 WYFFCEPDYKYAKSRRVNRGTNEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHDSASK 119
WYFF D KY R NR G WK TG + + T +G K+ L F A +
Sbjct: 71 WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT--LGIKKALVFYA-GKAPR 127
Query: 120 KAKTEWVMHEIAVEDDPDYKK----------DFVVCRLERKR 151
KT+W+MHE + D D+V+CRL K+
Sbjct: 128 GVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169
>pdb|3KST|A Chain A, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
pdb|3KST|B Chain B, Crystal Structure Of Endo-1,4-Beta-Xylanase (Np_811807.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 1.70 A
Resolution
Length = 306
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 59 VWYFFCEPDYKYAKSRRVNRGTNE---GTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHD 115
V+Y ++ K V T++ G W K ++ +T ++GT F C D
Sbjct: 200 VYYLIYSANHYENKGYGVGYATSDTPXGPWVKYSKNPLLQGDAATGLVGTGHGAPFQCKD 259
Query: 116 SASKKA-KTEWVMHEIAVEDDPDYKKDFVV 144
+ K W EI + Y KDF +
Sbjct: 260 GSWKYIFHAHWSAAEI--QPRTSYIKDFAI 287
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,585
Number of Sequences: 62578
Number of extensions: 259050
Number of successful extensions: 488
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 13
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)