Query 040419
Match_columns 198
No_of_seqs 120 out of 900
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 7.5E-56 2.6E-60 353.7 13.8 147 1-152 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 2.8E-55 9.6E-60 350.0 12.3 148 1-153 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 64.9 3.4 0.00012 27.6 2.1 28 3-30 36-64 (74)
4 3dct_B Nuclear receptor coacti 41.2 12 0.00041 18.6 1.2 14 10-23 2-15 (21)
5 3nr5_A MAF1, repressor of RNA 22.7 25 0.00086 26.9 0.8 34 34-67 119-154 (164)
6 1cmb_A Met APO-repressor; DNA- 21.0 95 0.0032 21.4 3.4 38 10-51 50-88 (104)
7 3g1g_A GAG polyprotein, capsid 18.7 68 0.0023 21.9 2.2 22 10-31 62-83 (87)
8 2jv2_A Putative uncharacterize 17.2 64 0.0022 21.6 1.8 27 13-40 26-53 (83)
9 2ojp_A DHDPS, dihydrodipicolin 16.3 72 0.0025 26.1 2.3 27 3-30 103-129 (292)
10 1o5k_A DHDPS, dihydrodipicolin 15.2 79 0.0027 26.1 2.3 27 3-30 114-140 (306)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=7.5e-56 Score=353.74 Aligned_cols=147 Identities=37% Similarity=0.727 Sum_probs=131.0
Q ss_pred CCCCCCceeCCCHHHHHH-HHHHhhcCCCCCccceEeccCCCCCCCCCCCCCcccCCcceEEEeecccccccCCCcceec
Q 040419 1 MNSLVGFRFYPTDEEIIR-LLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHSEIQSEEEVWYFFCEPDYKYAKSRRVNRG 79 (198)
Q Consensus 1 ~~lp~G~rF~PtDeELi~-yL~~ki~g~~l~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~~~wyFF~~~~~~~~~g~R~~R~ 79 (198)
++|||||||+|||||||. ||++|+.|.+++..+|+++|||.+|||+||+.+..+ +.+||||+++.+++++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 579999999999999999 999999999999999999999999999999887653 78999999999999999999999
Q ss_pred cCCceEEecCCCceEEeCCCCeEEEEEEEEEeeeecCCCCCCccCeEEEEEEeCCCCC----------CCCCeEEEEEEE
Q 040419 80 TNEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHDSASKKAKTEWVMHEIAVEDDPD----------YKKDFVVCRLER 149 (198)
Q Consensus 80 ~~~G~W~~~g~~~~I~~~~~g~viG~k~~l~F~~~g~~~~~~kT~W~M~EY~l~~~~~----------~~~~~VLCkV~~ 149 (198)
+++|+||++|+++.|... |.+||+|++|+|| .|+++++.+|+|+||||+|..... ..++|||||||+
T Consensus 91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy-~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFY-AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCS--SSCCEEEEEEEEE-ESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeC--CcEEEEEEEEEEe-cCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999875 5899999999999 999999999999999999998643 157899999999
Q ss_pred cCC
Q 040419 150 KRE 152 (198)
Q Consensus 150 k~~ 152 (198)
|+.
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.8e-55 Score=350.02 Aligned_cols=148 Identities=39% Similarity=0.722 Sum_probs=128.1
Q ss_pred CCCCCCceeCCCHHHHHH-HHHHhhcCCCCCccceEeccCCCCCCCCCCCCCcccCCcceEEEeecccccccCCCcceec
Q 040419 1 MNSLVGFRFYPTDEEIIR-LLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHSEIQSEEEVWYFFCEPDYKYAKSRRVNRG 79 (198)
Q Consensus 1 ~~lp~G~rF~PtDeELi~-yL~~ki~g~~l~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~~~wyFF~~~~~~~~~g~R~~R~ 79 (198)
+.|||||||+|||||||. ||++|+.|.+++..+|+++|||.+|||+||+.+..+ +.+||||+++.+++++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 479999999999999999 999999999999999999999999999999876543 78999999999999999999999
Q ss_pred cCCceEEecCCCceEEeCCCCeEEEEEEEEEeeeecCCCCCCccCeEEEEEEeCCCCC-----CCCCeEEEEEEEcCCc
Q 040419 80 TNEGTWKKTGNGSKIKRKYSTEVIGTKRILSFSCHDSASKKAKTEWVMHEIAVEDDPD-----YKKDFVVCRLERKREK 153 (198)
Q Consensus 80 ~~~G~W~~~g~~~~I~~~~~g~viG~k~~l~F~~~g~~~~~~kT~W~M~EY~l~~~~~-----~~~~~VLCkV~~k~~~ 153 (198)
+++|+||++|+++.|... +.+||+|++|+|| .++++++.+|+|+||||+|..... ..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy-~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTE--GQRVGIKKALVFY-IGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEET--TEEEEEEEEEEEE-ESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEec--CcEEEEEEEEEEE-cCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999986 4899999999999 999999999999999999998752 2689999999999864
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=64.94 E-value=3.4 Score=27.63 Aligned_cols=28 Identities=7% Similarity=-0.011 Sum_probs=24.2
Q ss_pred CCCCceeCC-CHHHHHHHHHHhhcCCCCC
Q 040419 3 SLVGFRFYP-TDEEIIRLLKKKRLDPAFF 30 (198)
Q Consensus 3 lp~G~rF~P-tDeELi~yL~~ki~g~~l~ 30 (198)
.|.|+.|.. |++||-.||..++....|.
T Consensus 36 ~~~~~~~~~it~~eL~~fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEGYLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhCCeEE
Confidence 367899998 9999999999999988764
No 4
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=41.23 E-value=12 Score=18.60 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHh
Q 040419 10 YPTDEEIIRLLKKK 23 (198)
Q Consensus 10 ~PtDeELi~yL~~k 23 (198)
.+.|.+|+.||.-|
T Consensus 2 e~kdhqllrylldk 15 (21)
T 3dct_B 2 ESKDHQLLRYLLDK 15 (26)
T ss_pred chhHHHHHHHHHcc
Confidence 36789999988754
No 5
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=22.69 E-value=25 Score=26.94 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=18.2
Q ss_pred eEeccCCCCCCCCC--CCCCcccCCcceEEEeeccc
Q 040419 34 IKEIDFYSFEPWEL--PCHSEIQSEEEVWYFFCEPD 67 (198)
Q Consensus 34 I~~~Dvy~~~P~~L--p~~~~~~~~~~~wyFF~~~~ 67 (198)
+.++|||++.|..- |-.....-=.-.+|||.++.
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKkl 154 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRL 154 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCc
Confidence 46789999999832 32111000134566666544
No 6
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=20.98 E-value=95 Score=21.37 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.3
Q ss_pred CCCHHHHHH-HHHHhhcCCCCCccceEeccCCCCCCCCCCCCC
Q 040419 10 YPTDEEIIR-LLKKKRLDPAFFVHTIKEIDFYSFEPWELPCHS 51 (198)
Q Consensus 10 ~PtDeELi~-yL~~ki~g~~l~~~~I~~~Dvy~~~P~~Lp~~~ 51 (198)
+-|-.||++ -...-..|+|||. +.|+-...|.++|...
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~a 88 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEAA 88 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHHH
Confidence 457789999 5556778999996 4588888999998653
No 7
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=18.74 E-value=68 Score=21.93 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCCc
Q 040419 10 YPTDEEIIRLLKKKRLDPAFFV 31 (198)
Q Consensus 10 ~PtDeELi~yL~~ki~g~~l~~ 31 (198)
.|+.+|||.|+..|..-.||..
T Consensus 62 ~~~~~e~Ik~~l~~~~~~~~~~ 83 (87)
T 3g1g_A 62 LTTPGEIIKYVLDRQKTAPLTD 83 (87)
T ss_dssp CCSHHHHHHHHHHHHC------
T ss_pred CCChHHHHHHHHHHhhcCCccc
Confidence 4778999999888887777653
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=17.15 E-value=64 Score=21.65 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhcCCCCCc-cceEeccCC
Q 040419 13 DEEIIRLLKKKRLDPAFFV-HTIKEIDFY 40 (198)
Q Consensus 13 DeELi~yL~~ki~g~~l~~-~~I~~~Dvy 40 (198)
+.++..||++++.|.|+-. +.|. ++++
T Consensus 26 ~~~~~~~lk~~L~grPV~~GD~I~-i~~~ 53 (83)
T 2jv2_A 26 PPDFVDVIRIKLQGKTVRTGDVIG-ISIL 53 (83)
T ss_dssp CHHHHHHHHHHHTTSEECTTCEEE-EEET
T ss_pred CccHHHHHHHHHCCCCccCCCEEE-EeeC
Confidence 4556559999999999876 4444 5553
No 9
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=16.28 E-value=72 Score=26.06 Aligned_cols=27 Identities=11% Similarity=-0.030 Sum_probs=19.3
Q ss_pred CCCCceeCCCHHHHHHHHHHhhcCCCCC
Q 040419 3 SLVGFRFYPTDEEIIRLLKKKRLDPAFF 30 (198)
Q Consensus 3 lp~G~rF~PtDeELi~yL~~ki~g~~l~ 30 (198)
+||- -|.||+++|+.|.+.-+...++|
T Consensus 103 ~~P~-y~~~s~~~l~~~f~~ia~a~~lP 129 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFKAIAEHTDLP 129 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHHHHHTTCSSC
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4564 48899999999776666555565
No 10
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=15.20 E-value=79 Score=26.06 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=19.4
Q ss_pred CCCCceeCCCHHHHHHHHHHhhcCCCCC
Q 040419 3 SLVGFRFYPTDEEIIRLLKKKRLDPAFF 30 (198)
Q Consensus 3 lp~G~rF~PtDeELi~yL~~ki~g~~l~ 30 (198)
+||- -|.||+++|+.|.+.-+...++|
T Consensus 114 ~~P~-y~~~s~~~l~~~f~~va~a~~lP 140 (306)
T 1o5k_A 114 VTPY-YNKPTQEGLYQHYKYISERTDLG 140 (306)
T ss_dssp ECCC-SSCCCHHHHHHHHHHHHTTCSSC
T ss_pred CCCC-CCCCCHHHHHHHHHHHHHhCCCC
Confidence 4564 48899999999766666555565
Done!