BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040420
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04170|RUBR1_DESDA Rubredoxin-1 OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=rd1 PE=1 SV=1
Length = 45
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 77 QAYICRDCGYIYN----ERKPFDQLPDNYFCPVCGAPKRRFRP 115
Q Y+C CGY Y+ + PFDQLPD++ CPVCG K +F P
Sbjct: 2 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 44
>sp|P24297|RUBR_PYRFU Rubredoxin OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 /
JCM 8422 / Vc1) GN=rub PE=1 SV=2
Length = 54
Score = 50.1 bits (118), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 11/46 (23%)
Query: 79 YICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRF 113
++C+ CGYIY+E F++LPD++ CP+CGAPK F
Sbjct: 4 WVCKICGYIYDEDAGDPDNGISPGTKFEELPDDWVCPICGAPKSEF 49
>sp|O26258|RUBR_METTH Probable rubredoxin OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_155 PE=3 SV=1
Length = 63
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 11/55 (20%)
Query: 72 RVASKQAYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRP 115
V++ + Y CR CGYIY+ K PF+ LP+ + CP CGA K+ F+P
Sbjct: 7 EVSAMKRYKCRVCGYIYDPEKGEPRTDTPPGTPFEDLPETWRCPSCGAKKKMFKP 61
>sp|P58992|RUBR1_CHLTE Rubredoxin-1 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=rub1 PE=3 SV=1
Length = 69
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 11/50 (22%)
Query: 78 AYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRPY 116
+++C +CGYIY+ + PFD+LPD++ CPVC PK +F +
Sbjct: 16 SWMCAECGYIYDPAEGNLETNIRPGMPFDKLPDDWSCPVCNHPKNQFTKF 65
>sp|Q9V099|RUBR_PYRAB Rubredoxin OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rub PE=1
SV=1
Length = 53
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C+ CGYIY+E + F+ LPD++ CP+CGAPK F
Sbjct: 6 CKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEF 49
>sp|Q9AL94|RUBR_CLOAB Rubredoxin OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792
/ JCM 1419 / LMG 5710 / VKM B-1787) GN=rd PE=1 SV=1
Length = 54
Score = 43.1 bits (100), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIY-----------NERKPFDQLPDNYFCPVCGAPKRRFRP 115
+ Y+C CGYIY N F+ +PD++ CP+CG K +F P
Sbjct: 2 KKYVCVVCGYIYDPAEGDPDNGVNPGTSFEDIPDDWVCPLCGVGKDQFEP 51
>sp|P58993|RUBR2_CHLTE Rubredoxin-2 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=rub2 PE=3 SV=1
Length = 52
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
+ + C CGYIYN F+ LPD++ CPVCGA K F
Sbjct: 2 EQWKCNICGYIYNPETGDPEGDIPAGTSFESLPDSWMCPVCGAGKEEF 49
>sp|Q9XBL8|RUBR_ANAVT Rubredoxin OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=rub PE=3 SV=1
Length = 111
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 79 YICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRPYTPAVTRGANDT 127
+ CR CGY+Y K PF +LP N+ CPVC A K F PA T
Sbjct: 14 FECRSCGYVYEPEKGDSKHDIAPETPFAELPINWRCPVCTAKKAAFSNIGPAGT------ 67
Query: 128 AVRKARKEQIQRDEAIGKALPI---AIAVAAVALAGLYF 163
+E + + K P + A+AL L+F
Sbjct: 68 --ASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFF 104
>sp|P09947|RUBR_CHLLT Rubredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=rub
PE=1 SV=1
Length = 53
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIYN--ERKP---------FDQLPDNYFCPVCGAPKRRFRP 115
Q Y+C CGY+Y+ + +P F+ LP+++ CPVCG K F P
Sbjct: 2 QKYVCSVCGYVYDPADGEPDDPIDPGTGFEDLPEDWVCPVCGVDKDLFEP 51
>sp|Q9WWN1|RUBR_NOSS1 Rubredoxin OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rub PE=3
SV=2
Length = 111
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 22/99 (22%)
Query: 79 YICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRPYTPAVTRGANDT 127
+ CR CGY+Y K PF +LP N+ CPVC A K F PA T
Sbjct: 14 FECRSCGYVYEPEKGDNKHDIAPETPFAELPINWRCPVCTAKKAAFTNIGPAGT------ 67
Query: 128 AVRKARKEQIQRDEAIGKALPI---AIAVAAVALAGLYF 163
+E + + K P + A+AL L+F
Sbjct: 68 --ASGFRENLGYGLGVNKLTPAQKNILIFGALALGFLFF 104
>sp|P73068|RUBR_SYNY3 Rubredoxin OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rub
PE=3 SV=1
Length = 115
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIY----NERK-------PFDQLPDNYFCPVCGAPKRRF 113
CR CGY+Y ++K PF+ LP N+ CPVCGAP+ F
Sbjct: 20 CRACGYVYIPSQGDQKTSVSPGTPFEALPLNWKCPVCGAPRNYF 63
>sp|P00269|RUBR_DESVH Rubredoxin OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC
29579 / NCIMB 8303) GN=rub PE=1 SV=2
Length = 52
Score = 41.6 bits (96), Expect = 0.003, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIY--------NERKP---FDQLPDNYFCPVCGAPKRRF 113
+ Y+C CGY Y N KP FD LP ++ CPVCGAPK F
Sbjct: 2 KKYVCTVCGYEYDPAEGDPDNGVKPGTSFDDLPADWVCPVCGAPKSEF 49
>sp|P00268|RUBR_CLOPA Rubredoxin OS=Clostridium pasteurianum PE=1 SV=2
Length = 54
Score = 40.4 bits (93), Expect = 0.006, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRF 113
+ Y C CGYIYN F +PD++ CP+CG K +F
Sbjct: 2 KKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVGKDQF 49
>sp|P15412|RUBR_DESVM Rubredoxin OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM
19637) GN=rub PE=1 SV=1
Length = 52
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIY--------NERKP---FDQLPDNYFCPVCGAPKRRFRP 115
+ Y+C CGY Y N KP F+ +P ++ CP+CGAPK F P
Sbjct: 2 KKYVCTVCGYEYDPAEGDPDNGVKPGTAFEDVPADWVCPICGAPKSEFEP 51
>sp|P00270|RUBR_DESGI Rubredoxin OS=Desulfovibrio gigas PE=1 SV=1
Length = 52
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 79 YICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
Y+C CGY Y+ K F+ LPD++ CPVCGA K F
Sbjct: 4 YVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAF 49
>sp|P14072|RUBR2_CLOPE Rubredoxin-2 OS=Clostridium perfringens (strain 13 / Type A)
GN=rubR2 PE=1 SV=2
Length = 53
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIY--------NERKP---FDQLPDNYFCPVCGAPKRRF 113
+ +IC CGYIY N +P F +PD++ CP+CG K +F
Sbjct: 2 KKFICDVCGYIYDPAVGDPDNGVEPGTEFKDIPDDWVCPLCGVDKSQF 49
>sp|P00272|RUBR2_PSEOL Rubredoxin-2 OS=Pseudomonas oleovorans GN=alkG PE=1 SV=3
Length = 173
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 79 YICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPY 116
+IC CG+IY+E F+ +PD++ CP CGA K + Y
Sbjct: 122 WICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDYVLY 170
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 11/40 (27%)
Query: 78 AYICRDCGYIYNER-----------KPFDQLPDNYFCPVC 106
+Y C DC Y+Y+E P+ +P+++ CP C
Sbjct: 3 SYKCPDCNYVYDESAGNVHEGFSPGTPWHLIPEDWCCPDC 42
>sp|P00271|RUBR_MEGEL Rubredoxin OS=Megasphaera elsdenii PE=1 SV=1
Length = 52
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 79 YICRDCGYIYNERK----------PFDQLPDNYFCPVCGAPKRRF 113
Y C CGYIY+E + F LP ++ CP CGA K F
Sbjct: 4 YECSICGYIYDEAEGDDGNVAAGTKFADLPADWVCPTCGADKDAF 48
>sp|P00267|RUBR_PEPAS Rubredoxin OS=Peptostreptococcus asaccharolyticus PE=1 SV=1
Length = 53
Score = 38.5 bits (88), Expect = 0.021, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 77 QAYICRDCGYIYN----------ERKPFDQLPDNYFCPVCGAPKRRFRPY 116
Q + C CGYIY+ + F+ + +N+ CP+CGA K F Y
Sbjct: 2 QKFECTLCGYIYDPALVGPDTPDQDGAFEDVSENWVCPLCGAGKEDFEVY 51
>sp|Q0VKZ2|RUBR2_ALCBS Rubredoxin-2 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 /
DSM 11573) GN=alkG PE=3 SV=1
Length = 174
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 79 YICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRF 113
+IC CG+IY+E F+ +PD++ CP CGA K +
Sbjct: 124 WICITCGHIYDEALGDETEGFAPGTLFEDIPDDWCCPDCGATKEDY 169
>sp|P23474|RUBR_CLOSD Rubredoxin OS=Clostridium sticklandii (strain ATCC 12662 / DSM 519
/ JCM 1433 / NCIB 10654) GN=CLOST_1462 PE=1 SV=1
Length = 53
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 79 YICRDCGYIY-----------NERKPFDQLPDNYFCPVCGAPKRRF 113
Y+C CGY+Y N F +P+++ CP+CG K +F
Sbjct: 4 YVCTVCGYVYDPEVGDPDNNINPGTSFQDIPEDWVCPLCGVGKDQF 49
>sp|P58025|RUBR3_CHLTE Rubredoxin 3 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 /
TLS) GN=rub3 PE=1 SV=2
Length = 53
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 11/52 (21%)
Query: 77 QAYICRDCGYIY--------NERKP---FDQLPDNYFCPVCGAPKRRFRPYT 117
Q ++C CGY Y N +P F+ LP+++ CPVCG K F P +
Sbjct: 2 QKWVCVPCGYEYDPADGDPENGIEPGTAFEDLPEDWVCPVCGVDKSFFEPVS 53
>sp|Q9FDN6|HRB_MOOTA High molecular weight rubredoxin OS=Moorella thermoacetica (strain
ATCC 39073) GN=hrb PE=1 SV=1
Length = 229
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 17/66 (25%)
Query: 66 APKFSM-RVASKQA-----YICRDCGYIYNERK-----------PFDQLPDNYFCPVCGA 108
AP F++ R K A Y C C Y+Y+ + PF LP+++ CP+CGA
Sbjct: 162 APTFTVGREKDKTALASPKYQCTICNYVYDPVQGDPEHGIAPGTPFADLPEDWTCPICGA 221
Query: 109 PKRRFR 114
K F
Sbjct: 222 GKDAFE 227
>sp|A0KEJ1|NORV_AERHH Anaerobic nitric oxide reductase flavorubredoxin OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=norV PE=3 SV=1
Length = 495
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 11/52 (21%)
Query: 75 SKQAYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRP 115
QA +C C ++Y+ + P+ Q+PD++ CP CG K F P
Sbjct: 437 DDQAMLCTVCQWVYDPAQGEPDQLVAPGTPWAQVPDSFLCPGCGIGKEVFEP 488
>sp|P14071|RUBR_BUTME Rubredoxin OS=Butyribacterium methylotrophicum PE=1 SV=1
Length = 53
Score = 37.4 bits (85), Expect = 0.043, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRFRP 115
Q Y+C CGY+Y+ F LP+++ CP CG K F P
Sbjct: 2 QKYVCDICGYVYDPAVGDPDNGVAPGTAFADLPEDWVCPECGVSKDEFSP 51
>sp|Q9WWW4|RUBR1_PSEPU Rubredoxin-1 OS=Pseudomonas putida GN=alkG PE=3 SV=1
Length = 175
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 79 YICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPY 116
+IC CG+IY+E F+ +P+++ CP CGA K + Y
Sbjct: 122 WICITCGHIYDEALGDEVEGFAPGTRFEDIPNDWCCPDCGATKEDYVLY 170
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 11/39 (28%)
Query: 79 YICRDCGYIYNERK-----------PFDQLPDNYFCPVC 106
Y C DC Y+Y+E K P+ +P+++ CP C
Sbjct: 4 YQCPDCQYVYDESKGEEHEGFAPNTPWIVIPEDWCCPDC 42
>sp|P56263|RUBR_HELMO Rubredoxin OS=Heliobacillus mobilis PE=1 SV=1
Length = 52
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFRP 115
+ Y C CGY+Y+ K F+ LP ++ CP+CG K F P
Sbjct: 2 KKYGCLVCGYVYDPAKGDPDHGIAPGTAFEDLPADWVCPLCGVSKDEFEP 51
>sp|Q93PP8|RUBR2_DESDA Rubredoxin-2 OS=Desulfovibrio desulfuricans (strain ATCC 27774 /
DSM 6949) GN=rd2 PE=1 SV=3
Length = 62
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 11/43 (25%)
Query: 83 DCGYIYN------ERK-----PFDQLPDNYFCPVCGAPKRRFR 114
+CGY+Y+ RK F+ LP+++ CPVCGA K+ FR
Sbjct: 14 NCGYVYDPDRGDKRRKVPAGTKFEDLPEDWRCPVCGAGKKSFR 56
>sp|Q58145|RUBR1_METJA Probable Rubredoxin-1 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0735 PE=3 SV=1
Length = 80
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 13/57 (22%)
Query: 77 QAYICRDCGYIYNERK-----------PFDQLPDNYFCPVC--GAPKRRFRPYTPAV 120
+ Y C+ CG++Y+ K PF++LPD + CPVC K F P V
Sbjct: 20 RKYKCKVCGWVYDPLKGDPSQNIPPKTPFEELPDTWICPVCRGKVGKESFEPLDEWV 76
>sp|O83956|RUBR_TREPA Rubredoxin OS=Treponema pallidum (strain Nichols) GN=TP_0991 PE=3
SV=1
Length = 52
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 79 YICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRF 113
Y+C CG+ YN F+ LPD++ CP+CG K F
Sbjct: 4 YMCDLCGWGYNPEVGDADGGIPAGTAFENLPDHWECPLCGVDKTSF 49
>sp|P19500|RUBR_THETC Rubredoxin OS=Thermoanaerobacterium thermosaccharolyticum (strain
ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) GN=Tthe_0549
PE=1 SV=1
Length = 52
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRF 113
+ + C CGYIY+ F+ LPD++ CP CG K +F
Sbjct: 2 EKWQCTVCGYIYDPEVGDPTQNIPPGTKFEDLPDDWVCPDCGVGKDQF 49
>sp|Q58150|RUBR2_METJA Probable Rubredoxin-2 OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ0740 PE=3 SV=1
Length = 55
Score = 34.7 bits (78), Expect = 0.30, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 84 CGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
CG++Y+E K F+ LPD + CP CG K FR
Sbjct: 11 CGWVYDEDKGEPSQNIPPGTKFEDLPDTFRCPQCGLGKNAFR 52
>sp|P0A4E9|RUBR3_RHOSQ Rubredoxin 3 OS=Rhodococcus sp. (strain Q15) GN=rubA3 PE=3 SV=1
Length = 61
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
Query: 78 AYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGA-PKRRFRP 115
+Y C C Y+Y+E K P+D +PD++ CP CG K F P
Sbjct: 3 SYRCPVCEYVYDESKGAPREGFPAGTPWDAVPDDWCCPDCGVREKLDFEP 52
>sp|P0A4E8|RUBR3_RHOER Rubredoxin 3 OS=Rhodococcus erythropolis GN=rubA3 PE=3 SV=1
Length = 61
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
Query: 78 AYICRDCGYIYNERK-----------PFDQLPDNYFCPVCGA-PKRRFRP 115
+Y C C Y+Y+E K P+D +PD++ CP CG K F P
Sbjct: 3 SYRCPVCEYVYDESKGAPREGFPAGTPWDAVPDDWCCPDCGVREKLDFEP 52
>sp|P42453|RUBR_ACIAD Rubredoxin OS=Acinetobacter sp. (strain ADP1) GN=rubA PE=1 SV=1
Length = 54
Score = 33.9 bits (76), Expect = 0.46, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIYNERKPFDQ-----------LPDNYFCPVCGAPKRRF 113
+ Y C CG+IY+E + + Q +PD++ CP CG K F
Sbjct: 2 KKYQCIVCGWIYDEAEGWPQDGIAPGTKWEDIPDDWTCPDCGVSKVDF 49
>sp|A4STH4|NORV_AERS4 Anaerobic nitric oxide reductase flavorubredoxin OS=Aeromonas
salmonicida (strain A449) GN=norV PE=3 SV=1
Length = 521
Score = 33.9 bits (76), Expect = 0.50, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 11/50 (22%)
Query: 77 QAYICRDCGYIYNER-----------KPFDQLPDNYFCPVCGAPKRRFRP 115
Q +C C +IY+ P+ ++PD++ CP CG K F P
Sbjct: 465 QPMLCTVCQWIYDPALGEPDQLVAPGTPWARVPDSFLCPGCGIGKEVFEP 514
>sp|Q9AGG3|RUBY_PORGI Rubrerythrin OS=Porphyromonas gingivalis (strain ATCC BAA-308 /
W83) GN=rbr PE=2 SV=1
Length = 200
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 20 PLLAPTGNNAGLRRPADRFALKSSFSAPSLHLLLSPPHQQQLLASAAPKFSMRVASKQAY 79
P A T G + A F + A L+ LLA + A+
Sbjct: 112 PAFAETAEEEGFKEIAAVFRQIAKVEAEHERRYLA------LLAHVEDGSVFERTEEIAW 165
Query: 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRP 115
CR+CGY+ +K P CP C P+ F P
Sbjct: 166 QCRNCGYVITSKKA----PK--LCPACAHPQAYFEP 195
>sp|Q8XMB2|RUBR1_CLOPE Rubredoxin-1 OS=Clostridium perfringens (strain 13 / Type A)
GN=rubR1 PE=3 SV=1
Length = 53
Score = 33.5 bits (75), Expect = 0.63, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 77 QAYICRDCGYIY--------NERKP---FDQLPDNYFCPVCGAPKRRF 113
+ ++C CGYIY N P F +PD + CP+C K F
Sbjct: 2 EKFVCDVCGYIYDPVVGDPDNGVAPGTKFKDIPDTWVCPLCKLDKTHF 49
>sp|Q50533|RUBH_METTH Putative rubredoxin OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rdxA PE=3 SV=1
Length = 177
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFR 114
ICR CGY E + F+ L D + CP CG K +
Sbjct: 3 ICRICGYQIPEGE-FNLLEDGWVCPRCGVGKEELQ 36
>sp|A7ZQD9|NORV_ECO24 Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli O139:H28 (strain E24377A / ETEC) GN=norV PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|Q32CL8|NORV_SHIDS Anaerobic nitric oxide reductase flavorubredoxin OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=norV PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|Q31X74|NORV_SHIBS Anaerobic nitric oxide reductase flavorubredoxin OS=Shigella boydii
serotype 4 (strain Sb227) GN=norV PE=3 SV=1
Length = 479
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|Q46877|NORV_ECOLI Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli (strain K12) GN=norV PE=1 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|B1IUW9|NORV_ECOLC Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=norV PE=3
SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|B1XCN7|NORV_ECODH Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli (strain K12 / DH10B) GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 11/45 (24%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRFR 114
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVFE 472
>sp|Q1R7Z0|NORV_ECOUT Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli (strain UTI89 / UPEC) GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471
>sp|Q0TEH0|NORV_ECOL5 Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli O6:K15:H31 (strain 536 / UPEC) GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471
>sp|A1AEQ0|NORV_ECOK1 Anaerobic nitric oxide reductase flavorubredoxin OS=Escherichia
coli O1:K1 / APEC GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471
>sp|P59405|NORV_SHIFL Anaerobic nitric oxide reductase flavorubredoxin OS=Shigella
flexneri GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471
>sp|Q0T1D5|NORV_SHIF8 Anaerobic nitric oxide reductase flavorubredoxin OS=Shigella
flexneri serotype 5b (strain 8401) GN=norV PE=3 SV=1
Length = 479
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 81 CRDCGYIYNERK-----------PFDQLPDNYFCPVCGAPKRRF 113
C C +IY+ K P+ ++PDN+ CP C K F
Sbjct: 428 CSVCQWIYDPAKGEPMQDVAPGTPWSEVPDNFLCPECSLGKDVF 471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,211,425
Number of Sequences: 539616
Number of extensions: 2543684
Number of successful extensions: 8020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 7951
Number of HSP's gapped (non-prelim): 85
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)