Query 040420
Match_columns 169
No_of_seqs 188 out of 1037
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:06:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040420.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040420hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dx8_A Rubredoxin; electron tr 99.8 3.1E-20 1E-24 131.2 2.4 56 75-141 4-70 (70)
2 1s24_A Rubredoxin 2; electron 99.7 5.2E-18 1.8E-22 124.5 4.5 46 72-117 29-85 (87)
3 4rxn_A Rubredoxin; electron tr 99.7 7.5E-18 2.6E-22 113.9 4.0 41 77-117 2-53 (54)
4 1e8j_A Rubredoxin; iron-sulfur 99.7 2.2E-17 7.7E-22 110.5 4.5 40 77-116 2-52 (52)
5 2kn9_A Rubredoxin; metalloprot 99.7 3.1E-17 1E-21 119.0 5.1 45 74-118 23-78 (81)
6 2v3b_B Rubredoxin 2, rubredoxi 99.7 2.5E-17 8.4E-22 111.4 4.1 41 77-117 2-53 (55)
7 1yk4_A Rubredoxin, RD; electro 99.7 2.4E-17 8.3E-22 110.3 3.5 39 78-116 2-51 (52)
8 6rxn_A Rubredoxin; electron tr 99.7 3E-17 1E-21 107.7 3.2 40 76-115 2-45 (46)
9 1yuz_A Nigerythrin; rubrythrin 98.9 5.5E-10 1.9E-14 91.2 4.1 36 74-116 167-202 (202)
10 1lko_A Rubrerythrin all-iron(I 98.9 3.1E-10 1.1E-14 91.5 1.8 38 74-117 151-188 (191)
11 3pwf_A Rubrerythrin; non heme 98.9 7.2E-10 2.5E-14 88.5 3.8 35 75-116 135-169 (170)
12 2kdx_A HYPA, hydrogenase/ureas 97.3 0.00015 5E-09 54.1 3.8 35 75-115 70-105 (119)
13 3a43_A HYPD, hydrogenase nicke 96.9 0.00033 1.1E-08 54.0 1.9 39 75-113 67-120 (139)
14 2lcq_A Putative toxin VAPC6; P 96.5 0.0013 4.5E-08 50.8 2.9 35 69-109 123-157 (165)
15 2gmg_A Hypothetical protein PF 96.3 0.0018 6E-08 48.8 2.5 28 77-109 66-93 (105)
16 4ayb_P DNA-directed RNA polyme 95.3 0.0084 2.9E-07 39.5 2.2 30 77-108 2-31 (48)
17 2apo_B Ribosome biogenesis pro 93.9 0.06 2E-06 36.7 3.9 53 77-144 5-57 (60)
18 1twf_L ABC10-alpha, DNA-direct 93.8 0.056 1.9E-06 37.6 3.5 29 75-108 25-53 (70)
19 3h0g_I DNA-directed RNA polyme 93.8 0.08 2.7E-06 39.2 4.6 40 77-116 25-88 (113)
20 2aus_D NOP10, ribosome biogene 91.9 0.15 5.1E-06 34.8 3.5 49 78-141 5-53 (60)
21 1twf_I B12.6, DNA-directed RNA 91.6 0.27 9.2E-06 36.8 5.0 43 76-118 24-90 (122)
22 2epq_A POZ-, at HOOK-, and zin 91.4 0.17 5.8E-06 29.2 3.0 30 76-107 8-45 (45)
23 3h0g_L DNA-directed RNA polyme 90.3 0.15 5.1E-06 35.0 2.3 28 76-108 19-46 (63)
24 2k16_A Transcription initiatio 90.2 0.28 9.6E-06 33.1 3.6 36 73-108 13-67 (75)
25 3irb_A Uncharacterized protein 90.1 0.11 3.7E-06 39.9 1.6 32 78-117 47-78 (145)
26 2ctu_A Zinc finger protein 483 89.7 0.13 4.3E-06 32.1 1.4 33 76-109 16-48 (73)
27 2akl_A PHNA-like protein PA012 89.3 0.089 3E-06 41.2 0.5 27 77-110 26-54 (138)
28 3uk3_C Zinc finger protein 217 88.4 0.17 6E-06 30.3 1.4 32 77-108 3-40 (57)
29 4gzn_C ZFP-57, zinc finger pro 87.9 0.34 1.1E-05 31.4 2.6 30 77-108 3-40 (60)
30 1x6e_A Zinc finger protein 24; 87.9 0.44 1.5E-05 30.2 3.2 32 75-108 11-50 (72)
31 1x5w_A Zinc finger protein 64, 87.6 0.36 1.2E-05 30.3 2.6 31 76-108 7-45 (70)
32 2gnr_A Conserved hypothetical 87.1 0.27 9.4E-06 37.9 2.1 33 77-117 46-78 (145)
33 2ytk_A Zinc finger protein 347 86.7 0.69 2.3E-05 26.5 3.3 15 76-90 10-24 (46)
34 2lce_A B-cell lymphoma 6 prote 86.6 0.34 1.2E-05 30.8 2.0 33 74-108 13-53 (74)
35 2ema_A Zinc finger protein 347 86.5 0.73 2.5E-05 26.4 3.3 29 76-106 10-46 (46)
36 2epr_A POZ-, at HOOK-, and zin 86.3 0.78 2.7E-05 26.8 3.4 31 75-107 9-47 (48)
37 1bbo_A Human enhancer-binding 85.8 0.29 9.8E-06 29.3 1.3 28 79-108 2-37 (57)
38 2emf_A Zinc finger protein 484 85.8 0.87 3E-05 26.2 3.4 29 76-106 10-46 (46)
39 2emh_A Zinc finger protein 484 85.8 0.81 2.8E-05 26.2 3.3 15 76-90 10-24 (46)
40 2en1_A Zinc finger protein 224 85.5 0.87 3E-05 26.1 3.3 29 76-106 10-46 (46)
41 2el4_A Zinc finger protein 268 85.5 0.85 2.9E-05 26.0 3.3 29 76-106 10-46 (46)
42 2eme_A Zinc finger protein 473 85.4 0.85 2.9E-05 26.0 3.2 29 76-106 10-46 (46)
43 2adr_A ADR1; transcription reg 85.4 0.32 1.1E-05 29.4 1.4 29 78-108 2-38 (60)
44 2em7_A Zinc finger protein 224 85.3 0.92 3.2E-05 26.0 3.4 29 76-106 10-46 (46)
45 2ep2_A Zinc finger protein 484 85.2 0.9 3.1E-05 26.0 3.3 15 76-90 10-24 (46)
46 2ytj_A Zinc finger protein 484 85.2 0.95 3.3E-05 25.9 3.4 15 76-90 10-24 (46)
47 2emp_A Zinc finger protein 347 85.0 0.97 3.3E-05 25.9 3.4 15 76-90 10-24 (46)
48 2lv9_A Histone-lysine N-methyl 84.9 1.4 4.8E-05 31.6 4.8 31 78-108 42-75 (98)
49 2lv2_A Insulinoma-associated p 84.9 0.54 1.8E-05 32.5 2.5 32 75-108 25-64 (85)
50 2en6_A Zinc finger protein 268 84.8 0.99 3.4E-05 25.8 3.3 15 76-90 10-24 (46)
51 2yu8_A Zinc finger protein 347 84.7 0.97 3.3E-05 25.9 3.3 15 76-90 10-24 (46)
52 2emy_A Zinc finger protein 268 84.5 1 3.4E-05 25.8 3.3 15 76-90 10-24 (46)
53 2ytg_A ZFP-95, zinc finger pro 84.5 1 3.6E-05 25.7 3.3 15 76-90 10-24 (46)
54 2eml_A Zinc finger protein 28 84.5 0.99 3.4E-05 25.8 3.2 15 76-90 10-24 (46)
55 2em8_A Zinc finger protein 224 84.5 1 3.5E-05 25.8 3.3 15 76-90 10-24 (46)
56 2emx_A Zinc finger protein 268 84.4 1.1 3.8E-05 25.4 3.4 15 76-90 8-22 (44)
57 2epw_A Zinc finger protein 268 84.4 1 3.6E-05 25.6 3.3 15 76-90 10-24 (46)
58 2em9_A Zinc finger protein 224 84.3 1 3.5E-05 25.6 3.2 15 76-90 10-24 (46)
59 2ytd_A Zinc finger protein 473 84.1 1.1 3.6E-05 25.7 3.3 15 76-90 10-24 (46)
60 2eoe_A Zinc finger protein 347 84.0 0.78 2.7E-05 26.2 2.6 29 76-106 10-46 (46)
61 2drp_A Protein (tramtrack DNA- 83.9 0.74 2.5E-05 28.3 2.6 33 76-108 8-48 (66)
62 2el6_A Zinc finger protein 268 83.8 1.1 3.9E-05 25.7 3.3 29 76-106 10-46 (46)
63 2ytn_A Zinc finger protein 347 83.7 0.79 2.7E-05 26.3 2.6 29 76-106 10-46 (46)
64 2ct1_A Transcriptional repress 83.6 0.74 2.5E-05 29.3 2.6 33 76-108 13-53 (77)
65 1x6h_A Transcriptional repress 83.5 1.1 3.7E-05 28.6 3.4 32 77-108 14-55 (86)
66 2emm_A ZFP-95, zinc finger pro 83.5 1.2 4.1E-05 25.4 3.3 15 76-90 10-24 (46)
67 2enc_A Zinc finger protein 224 83.2 1.2 4E-05 25.5 3.2 15 76-90 10-24 (46)
68 2eoo_A ZFP-95, zinc finger pro 83.2 1.2 4.3E-05 25.5 3.3 15 76-90 10-24 (46)
69 1vd4_A Transcription initiatio 83.1 0.6 2.1E-05 29.2 2.0 33 76-108 12-47 (62)
70 2yt9_A Zinc finger-containing 82.9 0.82 2.8E-05 29.8 2.7 32 77-108 34-73 (95)
71 1m2k_A Silent information regu 82.9 0.81 2.8E-05 37.5 3.2 31 78-109 121-151 (249)
72 2ely_A Zinc finger protein 224 82.8 0.85 2.9E-05 26.2 2.4 15 76-90 10-24 (46)
73 1ltl_A DNA replication initiat 82.5 0.9 3.1E-05 37.7 3.4 36 75-115 131-169 (279)
74 2yso_A ZFP-95, zinc finger pro 82.4 1.4 4.8E-05 25.1 3.3 15 76-90 10-24 (46)
75 2ee8_A Protein ODD-skipped-rel 82.4 1.1 3.6E-05 30.0 3.1 13 78-90 45-57 (106)
76 2eov_A Zinc finger protein 484 82.3 0.91 3.1E-05 25.9 2.4 15 76-90 10-24 (46)
77 2elz_A Zinc finger protein 224 81.8 0.95 3.2E-05 26.0 2.4 15 76-90 10-24 (46)
78 3qt1_I DNA-directed RNA polyme 81.8 0.38 1.3E-05 36.9 0.7 40 77-116 45-108 (133)
79 2eoq_A Zinc finger protein 224 81.5 0.97 3.3E-05 25.9 2.4 15 76-90 10-24 (46)
80 2em2_A Zinc finger protein 28 81.2 1.6 5.5E-05 25.0 3.3 15 76-90 10-24 (46)
81 2d9h_A Zinc finger protein 692 81.2 1.1 3.7E-05 28.5 2.7 33 76-108 5-46 (78)
82 1llm_C Chimera of ZIF23-GCN4; 81.2 1 3.4E-05 29.5 2.6 29 78-108 3-39 (88)
83 3j21_g 50S ribosomal protein L 81.0 1.9 6.3E-05 28.3 3.8 31 76-116 12-42 (51)
84 2kmk_A Zinc finger protein GFI 80.8 1.1 3.6E-05 28.3 2.5 32 77-108 28-65 (82)
85 2epx_A Zinc finger protein 28 80.8 1.4 4.9E-05 25.0 2.9 15 76-90 10-24 (47)
86 2eq4_A Zinc finger protein 224 80.4 1.1 3.7E-05 25.5 2.3 15 76-90 10-24 (46)
87 2emk_A Zinc finger protein 28 80.3 1.3 4.3E-05 25.4 2.6 15 76-90 10-24 (46)
88 2em0_A Zinc finger protein 224 80.1 0.98 3.3E-05 25.8 2.0 15 76-90 10-24 (46)
89 1a1h_A QGSR zinc finger peptid 80.1 1.2 4.2E-05 28.6 2.7 32 77-108 33-70 (90)
90 3p8b_A DNA-directed RNA polyme 80.0 0.86 3E-05 32.7 2.1 21 80-110 25-45 (81)
91 1h7b_A Anaerobic ribonucleotid 79.9 0.4 1.4E-05 44.8 0.3 31 75-109 537-567 (605)
92 2ytm_A Zinc finger protein 28 79.5 1.1 3.6E-05 25.9 2.1 15 76-90 10-24 (46)
93 2eq0_A Zinc finger protein 347 79.3 2.7 9.4E-05 23.8 3.9 29 76-106 10-46 (46)
94 2ene_A Zinc finger protein 347 79.2 2.9 0.0001 23.7 3.9 29 76-106 10-46 (46)
95 1vq8_Z 50S ribosomal protein L 79.1 0.51 1.8E-05 33.6 0.6 27 76-108 25-53 (83)
96 2ysp_A Zinc finger protein 224 79.0 2.7 9.3E-05 23.8 3.8 29 76-106 10-46 (46)
97 2cot_A Zinc finger protein 435 78.6 1.5 5E-05 27.9 2.7 32 75-108 15-54 (77)
98 2dmd_A Zinc finger protein 64, 78.6 1.3 4.4E-05 28.9 2.5 32 77-108 35-72 (96)
99 2em5_A ZFP-95, zinc finger pro 78.3 3 0.0001 23.7 3.8 29 76-106 10-46 (46)
100 2vl6_A SSO MCM N-TER, minichro 78.0 2 6.8E-05 35.2 4.0 38 75-115 138-182 (268)
101 2dlq_A GLI-kruppel family memb 77.9 1.2 4.2E-05 30.1 2.3 13 78-90 35-47 (124)
102 2csh_A Zinc finger protein 297 77.9 1.5 5.1E-05 29.5 2.7 32 77-108 36-73 (110)
103 1dl6_A Transcription factor II 76.8 2.3 7.9E-05 28.0 3.3 15 76-90 28-42 (58)
104 2eps_A POZ-, at HOOK-, and zin 75.9 2.8 9.6E-05 25.1 3.3 33 76-108 10-49 (54)
105 2avu_E Flagellar transcription 75.9 1.2 4E-05 36.4 2.0 36 75-112 131-166 (192)
106 3jyw_9 60S ribosomal protein L 75.8 1.1 3.9E-05 31.3 1.6 10 78-87 26-35 (72)
107 2ep0_A Zinc finger protein 28 75.8 3.9 0.00013 23.1 3.8 29 76-106 10-46 (46)
108 1nj3_A NPL4; NZF domain, rubre 75.6 3.7 0.00013 23.5 3.6 28 75-110 3-30 (31)
109 3gj3_B Nuclear pore complex pr 75.6 2.7 9.3E-05 25.1 3.1 28 75-110 4-31 (33)
110 2lri_C Autoimmune regulator; Z 75.4 2.5 8.6E-05 28.4 3.3 33 77-109 23-59 (66)
111 2ytt_A Zinc finger protein 473 75.1 1 3.6E-05 25.8 1.1 15 76-90 10-24 (46)
112 2en8_A Zinc finger protein 224 75.1 4.2 0.00014 22.9 3.8 29 76-106 10-46 (46)
113 3o70_A PHD finger protein 13; 75.0 0.96 3.3E-05 30.6 1.0 32 79-110 34-68 (68)
114 2zjr_Z 50S ribosomal protein L 74.9 3 0.0001 27.9 3.5 31 73-112 25-55 (60)
115 1vq8_Z 50S ribosomal protein L 74.8 1.2 4.2E-05 31.6 1.6 22 70-91 37-58 (83)
116 3f2b_A DNA-directed DNA polyme 74.8 1.3 4.4E-05 44.0 2.3 32 77-109 501-536 (1041)
117 2ytq_A Zinc finger protein 268 74.7 2.8 9.7E-05 23.9 3.0 29 76-106 10-46 (46)
118 2lk0_A RNA-binding protein 5; 74.7 3.7 0.00013 24.0 3.5 27 77-111 4-30 (32)
119 3gmt_A Adenylate kinase; ssgci 74.7 2.5 8.4E-05 34.6 3.6 30 77-108 130-159 (230)
120 3a9j_C Mitogen-activated prote 74.6 3.6 0.00012 24.0 3.4 28 76-111 6-33 (34)
121 2eop_A Zinc finger protein 268 74.3 2.9 0.0001 23.6 3.0 29 76-106 10-46 (46)
122 3j21_i 50S ribosomal protein L 74.1 1.5 5E-05 31.6 1.9 22 70-91 45-66 (83)
123 3iz5_m 60S ribosomal protein L 73.7 1.6 5.3E-05 32.0 2.0 22 70-91 46-67 (92)
124 1ryq_A DNA-directed RNA polyme 73.7 1.8 6.1E-05 30.1 2.2 22 79-110 12-33 (69)
125 1ma3_A SIR2-AF2, transcription 73.0 1.1 3.9E-05 36.7 1.2 28 78-108 123-155 (253)
126 3gj5_B Nuclear pore complex pr 73.0 3 0.0001 25.2 2.8 28 76-111 5-32 (34)
127 3cc2_Z 50S ribosomal protein L 72.8 1.4 4.9E-05 33.4 1.7 9 78-86 60-68 (116)
128 1pft_A TFIIB, PFTFIIBN; N-term 72.8 1.2 4.1E-05 27.9 1.0 8 101-108 25-32 (50)
129 2ep3_A Zinc finger protein 484 72.8 5.2 0.00018 22.6 3.8 15 76-90 10-24 (46)
130 2epz_A Zinc finger protein 28 72.7 3.3 0.00011 23.4 3.0 28 77-106 11-46 (46)
131 1f2i_G Fusion of N-terminal 17 72.6 2.6 9E-05 26.2 2.7 32 75-108 16-57 (73)
132 2kvh_A Zinc finger and BTB dom 72.3 1.9 6.5E-05 21.6 1.6 12 78-89 3-14 (27)
133 2m0d_A Zinc finger and BTB dom 71.3 2.1 7.1E-05 21.4 1.6 12 78-89 3-14 (30)
134 1ffk_W Ribosomal protein L37AE 70.8 1.7 5.9E-05 30.4 1.6 22 70-91 37-58 (73)
135 1q14_A HST2 protein; histone d 70.8 0.83 2.8E-05 40.0 -0.1 29 78-109 144-180 (361)
136 1q1a_A HST2 protein; ternary c 70.7 1.5 5E-05 36.7 1.4 29 78-109 136-172 (289)
137 3izc_m 60S ribosomal protein R 70.6 2 6.9E-05 31.4 1.9 21 71-91 47-67 (92)
138 2k1p_A Zinc finger RAN-binding 70.3 3.2 0.00011 24.5 2.5 28 76-111 4-31 (33)
139 3u31_A SIR2A, transcriptional 69.8 2.6 8.9E-05 35.7 2.8 31 78-109 154-190 (290)
140 3lpe_B DNA-directed RNA polyme 69.8 2.3 7.9E-05 28.6 2.0 20 80-109 3-22 (59)
141 4a17_Y RPL37A, 60S ribosomal p 69.5 2 7E-05 32.0 1.8 20 72-91 48-67 (103)
142 2m0f_A Zinc finger and BTB dom 69.4 2.1 7.3E-05 21.2 1.4 13 78-90 2-14 (29)
143 2ytr_A Zinc finger protein 347 69.2 3.1 0.00011 23.5 2.3 15 76-90 10-24 (46)
144 1f62_A Transcription factor WS 69.0 6.6 0.00023 24.3 3.9 33 76-108 13-49 (51)
145 2d9g_A YY1-associated factor 2 68.8 5.6 0.00019 25.9 3.6 29 76-112 9-37 (53)
146 2kvf_A Zinc finger and BTB dom 68.8 2.4 8.2E-05 21.2 1.5 12 78-89 3-14 (28)
147 2elq_A Zinc finger protein 406 68.5 2.9 9.8E-05 22.4 1.9 14 77-90 8-21 (36)
148 1srk_A Zinc finger protein ZFP 68.3 2.9 9.9E-05 22.1 1.9 14 77-90 6-19 (35)
149 2els_A Zinc finger protein 406 68.2 2.9 9.9E-05 22.3 1.9 13 77-89 8-20 (36)
150 3v2d_5 50S ribosomal protein L 68.2 4.6 0.00016 27.0 3.2 30 73-111 25-54 (60)
151 2elv_A Zinc finger protein 406 68.0 3.1 0.00011 22.2 2.0 14 77-90 8-21 (36)
152 1rik_A E6APC1 peptide; E6-bind 67.9 2.3 8E-05 21.2 1.4 13 78-90 2-14 (29)
153 1yc5_A NAD-dependent deacetyla 67.7 1.7 5.9E-05 35.4 1.2 29 78-109 121-154 (246)
154 1mm2_A MI2-beta; PHD, zinc fin 67.6 5.6 0.00019 25.9 3.5 31 79-109 22-56 (61)
155 1gh9_A 8.3 kDa protein (gene M 67.6 1.6 5.5E-05 30.3 0.8 24 78-108 4-28 (71)
156 1xwh_A Autoimmune regulator; P 67.4 1.9 6.5E-05 28.6 1.1 38 77-114 19-60 (66)
157 2lt7_A Transcriptional regulat 67.3 2.6 9E-05 30.7 2.0 13 78-90 22-34 (133)
158 1wgm_A Ubiquitin conjugation f 67.1 3.5 0.00012 29.1 2.6 8 78-85 22-29 (98)
159 2kvg_A Zinc finger and BTB dom 66.8 2.5 8.5E-05 21.3 1.3 13 78-90 3-15 (27)
160 2elt_A Zinc finger protein 406 66.6 3.1 0.00011 22.0 1.8 14 77-90 8-21 (36)
161 2elx_A Zinc finger protein 406 66.1 3.2 0.00011 21.7 1.8 13 78-90 7-19 (35)
162 2i13_A AART; DNA binding, zinc 65.9 3.8 0.00013 30.2 2.7 11 79-89 134-144 (190)
163 2dmi_A Teashirt homolog 3; zin 65.8 3.9 0.00013 27.6 2.6 13 78-90 19-31 (115)
164 2dlk_A Novel protein; ZF-C2H2 65.3 6.3 0.00021 24.6 3.3 30 77-108 37-76 (79)
165 2ebq_A Nuclear pore complex pr 64.6 7.3 0.00025 25.1 3.5 33 74-114 7-39 (47)
166 1dxg_A Desulforedoxin; non-hem 64.1 3.4 0.00012 24.6 1.7 14 76-89 4-17 (36)
167 3j20_Y 30S ribosomal protein S 64.0 3.2 0.00011 26.7 1.7 13 76-88 35-47 (50)
168 2lvu_A Zinc finger and BTB dom 67.7 1.4 4.9E-05 21.8 0.0 13 78-90 2-14 (26)
169 2elm_A Zinc finger protein 406 63.9 4.3 0.00015 22.1 2.1 14 77-90 8-21 (37)
170 1ard_A Yeast transcription fac 63.3 2 6.9E-05 21.4 0.5 11 79-89 3-13 (29)
171 1znf_A 31ST zinc finger from X 63.3 2 6.7E-05 21.2 0.5 11 79-89 2-12 (27)
172 2kr4_A Ubiquitin conjugation f 63.1 4.7 0.00016 27.5 2.5 16 93-108 7-22 (85)
173 2ebr_A Nuclear pore complex pr 62.8 4.8 0.00016 25.9 2.3 32 75-114 8-39 (47)
174 3ir9_A Peptide chain release f 62.8 5.1 0.00018 31.2 3.0 32 78-109 78-112 (166)
175 2wbt_A B-129; zinc finger; 2.7 62.7 4.3 0.00015 28.0 2.4 33 76-108 72-108 (129)
176 1we9_A PHD finger family prote 62.7 1.9 6.5E-05 28.0 0.4 12 98-109 47-58 (64)
177 2elp_A Zinc finger protein 406 62.0 4.7 0.00016 21.6 2.0 13 77-89 8-20 (37)
178 2elr_A Zinc finger protein 406 61.9 2.8 9.4E-05 22.3 1.0 12 78-89 9-20 (36)
179 2elo_A Zinc finger protein 406 61.7 3.3 0.00011 22.2 1.3 14 77-90 8-21 (37)
180 3u5n_A E3 ubiquitin-protein li 61.0 7.5 0.00026 30.7 3.7 33 78-110 19-55 (207)
181 2epa_A Krueppel-like factor 10 60.7 8.9 0.0003 23.7 3.4 17 74-90 13-31 (72)
182 1p7a_A BF3, BKLF, kruppel-like 60.7 3 0.0001 22.3 1.0 12 78-89 11-22 (37)
183 2ctd_A Zinc finger protein 512 60.5 3.5 0.00012 28.2 1.5 31 76-109 32-71 (96)
184 1klr_A Zinc finger Y-chromosom 60.3 2.1 7.3E-05 21.3 0.3 11 79-89 3-13 (30)
185 2m0e_A Zinc finger and BTB dom 60.2 2.1 7.1E-05 21.2 0.2 11 79-89 3-13 (29)
186 3glr_A NAD-dependent deacetyla 60.2 3.5 0.00012 34.9 1.8 29 78-109 139-172 (285)
187 3o36_A Transcription intermedi 60.1 8.1 0.00028 29.8 3.7 34 78-111 16-53 (184)
188 1w7p_D VPS36P, YLR417W; ESCRT- 59.8 1.9 6.5E-05 40.2 0.0 38 74-111 113-151 (566)
189 2jp9_A Wilms tumor 1; DNA bind 59.8 6.2 0.00021 26.4 2.7 13 78-90 66-78 (119)
190 2odx_A Cytochrome C oxidase po 59.4 5.1 0.00017 28.3 2.2 20 71-90 49-68 (80)
191 2ebv_A Nuclear pore complex pr 59.1 5.8 0.0002 26.5 2.3 29 75-111 28-56 (57)
192 3asl_A E3 ubiquitin-protein li 58.2 11 0.00039 25.2 3.7 31 78-108 33-68 (70)
193 1njq_A Superman protein; zinc- 58.1 5.6 0.00019 21.7 1.9 14 77-90 5-18 (39)
194 3dl0_A Adenylate kinase; phosp 57.6 8 0.00027 29.1 3.2 30 77-108 126-155 (216)
195 2lvt_A Zinc finger and BTB dom 62.1 2.2 7.5E-05 21.5 0.0 13 78-90 2-14 (29)
196 3gj8_B Nuclear pore complex pr 57.1 8.1 0.00028 27.3 3.0 29 75-111 62-90 (92)
197 2epc_A Zinc finger protein 32; 56.8 6.1 0.00021 21.7 1.9 14 77-90 10-23 (42)
198 1paa_A Yeast transcription fac 56.4 2.9 9.9E-05 21.0 0.4 11 79-89 3-13 (30)
199 2e6r_A Jumonji/ARID domain-con 56.3 4.2 0.00015 28.8 1.4 31 78-108 31-65 (92)
200 2ebt_A Krueppel-like factor 5; 55.7 11 0.00037 24.4 3.3 30 77-108 44-83 (100)
201 2en2_A B-cell lymphoma 6 prote 55.6 6.4 0.00022 21.6 1.9 14 77-90 10-23 (42)
202 2r6f_A Excinuclease ABC subuni 55.4 7.5 0.00026 38.3 3.4 30 77-108 266-299 (972)
203 2ej4_A Zinc finger protein ZIC 55.3 5.1 0.00018 25.9 1.6 14 77-90 24-37 (95)
204 2epv_A Zinc finger protein 268 55.1 6.3 0.00021 22.2 1.8 15 76-90 10-24 (44)
205 3iuf_A Zinc finger protein UBI 55.1 6.5 0.00022 23.0 1.9 14 77-90 6-19 (48)
206 2yqq_A Zinc finger HIT domain- 55.1 4.1 0.00014 27.1 1.1 18 80-108 14-31 (56)
207 2e6s_A E3 ubiquitin-protein li 54.8 21 0.00072 24.5 4.7 31 78-108 41-76 (77)
208 2kwq_A Protein MCM10 homolog; 54.7 8.1 0.00028 28.0 2.7 37 74-117 44-80 (92)
209 2wbs_A Krueppel-like factor 4; 54.6 8.8 0.0003 24.3 2.6 32 77-108 34-73 (89)
210 1fp0_A KAP-1 corepressor; PHD 54.3 13 0.00046 26.5 3.7 31 78-108 37-71 (88)
211 2ept_A Zinc finger protein 32; 54.1 7 0.00024 21.4 1.8 15 76-90 8-22 (41)
212 1iym_A EL5; ring-H2 finger, ub 54.0 8.8 0.0003 23.0 2.4 29 79-109 22-52 (55)
213 1yui_A GAGA-factor; complex (D 54.0 6.9 0.00024 23.1 1.9 15 76-90 22-36 (54)
214 2eow_A Zinc finger protein 347 53.9 7.1 0.00024 21.9 1.9 15 76-90 10-24 (46)
215 2emb_A Zinc finger protein 473 53.8 7 0.00024 21.8 1.8 14 77-90 11-24 (44)
216 2rpc_A Zinc finger protein ZIC 53.7 9.6 0.00033 26.9 3.0 13 78-90 25-37 (155)
217 2eof_A Zinc finger protein 268 53.7 7.1 0.00024 21.6 1.8 15 76-90 10-24 (44)
218 2lvr_A Zinc finger and BTB dom 58.7 2.8 9.5E-05 21.0 0.0 13 78-90 3-15 (30)
219 2eox_A Zinc finger protein 473 53.2 7.2 0.00025 21.7 1.8 15 76-90 10-24 (44)
220 2emi_A Zinc finger protein 484 53.1 7.4 0.00025 21.9 1.9 15 76-90 10-24 (46)
221 2jrp_A Putative cytoplasmic pr 53.0 5.7 0.00019 28.3 1.6 28 78-114 18-45 (81)
222 2eoz_A Zinc finger protein 473 53.0 7.2 0.00025 22.0 1.8 15 76-90 10-24 (46)
223 2yu5_A Zinc finger protein 473 52.9 7.4 0.00025 21.7 1.8 14 77-90 11-24 (44)
224 1ubd_C Protein (YY1 zinc finge 52.5 8 0.00027 26.2 2.3 14 77-90 33-46 (124)
225 1v54_F VI, cytochrome C oxidas 52.5 6.4 0.00022 28.7 1.8 15 75-89 76-90 (98)
226 2ytp_A Zinc finger protein 484 52.5 7.5 0.00026 21.9 1.8 15 76-90 10-24 (46)
227 3v43_A Histone acetyltransfera 52.3 16 0.00053 26.3 3.9 16 93-108 95-111 (112)
228 3tlx_A Adenylate kinase 2; str 52.3 12 0.00042 29.3 3.6 31 77-109 155-185 (243)
229 2epu_A Zinc finger protein 32; 52.2 7.4 0.00025 21.9 1.8 15 76-90 10-24 (45)
230 2eoy_A Zinc finger protein 473 52.2 7.7 0.00026 21.9 1.9 15 76-90 10-24 (46)
231 2ysm_A Myeloid/lymphoid or mix 51.7 7 0.00024 27.8 1.9 31 78-108 69-103 (111)
232 2yts_A Zinc finger protein 484 51.7 7.8 0.00027 21.7 1.8 15 76-90 10-24 (46)
233 2emj_A Zinc finger protein 28 51.7 7.7 0.00026 21.9 1.8 15 76-90 10-24 (46)
234 2em3_A Zinc finger protein 28 51.7 7.9 0.00027 21.8 1.8 15 76-90 10-24 (46)
235 2c2l_A CHIP, carboxy terminus 51.6 8.3 0.00028 30.3 2.5 10 102-111 245-254 (281)
236 2yrj_A Zinc finger protein 473 51.6 7.9 0.00027 21.7 1.8 15 76-90 10-24 (46)
237 1s5p_A NAD-dependent deacetyla 51.5 9.2 0.00031 30.9 2.8 30 78-108 113-142 (235)
238 2el5_A Zinc finger protein 268 51.4 8.1 0.00028 21.2 1.8 15 76-90 8-22 (42)
239 2yto_A Zinc finger protein 484 51.3 8.2 0.00028 21.8 1.9 15 76-90 10-24 (46)
240 2f9y_B Acetyl-coenzyme A carbo 51.3 3.3 0.00011 35.2 0.1 29 77-110 22-53 (304)
241 2eor_A Zinc finger protein 224 51.1 8.2 0.00028 21.6 1.8 15 76-90 10-24 (46)
242 2em4_A Zinc finger protein 28 51.1 8.1 0.00028 21.8 1.8 15 76-90 10-24 (46)
243 1l8d_A DNA double-strand break 51.0 4 0.00014 29.0 0.5 10 102-111 49-58 (112)
244 2l5u_A Chromodomain-helicase-D 50.9 10 0.00035 24.6 2.5 32 77-108 22-57 (61)
245 4bbq_A Lysine-specific demethy 50.9 4.9 0.00017 28.7 1.0 31 78-108 75-113 (117)
246 2ytf_A Zinc finger protein 268 50.8 8.1 0.00028 21.6 1.8 15 76-90 10-24 (46)
247 2yql_A PHD finger protein 21A; 50.2 6.8 0.00023 24.9 1.5 31 77-107 20-54 (56)
248 2eoj_A Zinc finger protein 268 49.8 6.6 0.00023 21.8 1.2 14 77-90 11-24 (44)
249 3fb4_A Adenylate kinase; psych 49.7 13 0.00044 27.8 3.2 30 77-108 126-155 (216)
250 2en3_A ZFP-95, zinc finger pro 49.6 8.6 0.0003 21.6 1.8 15 76-90 10-24 (46)
251 2kre_A Ubiquitin conjugation f 49.6 9.2 0.00031 27.0 2.3 8 78-85 29-36 (100)
252 2egp_A Tripartite motif-contai 49.5 21 0.00072 22.8 3.9 11 100-110 53-63 (79)
253 2eos_A B-cell lymphoma 6 prote 49.4 6 0.00021 21.8 1.0 14 77-90 10-23 (42)
254 4esj_A Type-2 restriction enzy 49.3 4 0.00014 34.8 0.3 25 80-108 36-64 (257)
255 2hjh_A NAD-dependent histone d 49.0 3.2 0.00011 35.9 -0.4 29 78-108 161-193 (354)
256 2ytb_A Zinc finger protein 32; 48.7 6 0.00021 21.7 0.9 14 77-90 10-23 (42)
257 2k1k_A Ephrin type-A receptor 48.2 16 0.00053 22.3 2.8 17 149-165 18-34 (38)
258 3o7a_A PHD finger protein 13 v 47.9 4.1 0.00014 25.7 0.1 31 78-108 18-51 (52)
259 1rim_A E6APC2 peptide; E6-bind 47.8 4.4 0.00015 21.6 0.2 11 79-89 3-13 (33)
260 2yte_A Zinc finger protein 473 47.4 6.5 0.00022 21.5 1.0 14 77-90 9-22 (42)
261 3f9v_A Minichromosome maintena 47.4 11 0.00037 34.4 2.9 39 75-114 132-175 (595)
262 2emg_A Zinc finger protein 484 47.4 6.5 0.00022 22.2 1.0 15 76-90 10-24 (46)
263 2j7j_A Transcription factor II 47.3 11 0.00039 23.3 2.2 13 78-90 31-45 (85)
264 1wii_A Hypothetical UPF0222 pr 47.0 11 0.00037 26.9 2.3 35 74-108 19-55 (85)
265 1qyp_A RNA polymerase II; tran 46.7 7.5 0.00026 24.9 1.3 13 77-89 42-54 (57)
266 3pih_A Uvrabc system protein A 46.7 9.7 0.00033 37.1 2.6 30 77-108 248-281 (916)
267 2jvx_A NF-kappa-B essential mo 46.4 6 0.0002 22.9 0.7 10 99-108 2-11 (28)
268 2con_A RUH-035 protein, NIN on 46.2 19 0.00065 25.3 3.4 27 78-111 15-41 (79)
269 3axs_A Probable N(2),N(2)-dime 46.2 10 0.00034 33.2 2.4 27 78-108 244-271 (392)
270 3riy_A NAD-dependent deacetyla 46.1 8.5 0.00029 31.9 1.9 12 78-89 134-145 (273)
271 2puy_A PHD finger protein 21A; 46.0 7.3 0.00025 25.1 1.2 32 77-108 16-51 (60)
272 2j9u_B VPS36, vacuolar protein 45.8 13 0.00044 26.3 2.5 35 74-111 13-51 (76)
273 1tfi_A Transcriptional elongat 45.8 12 0.0004 23.9 2.1 19 99-117 8-26 (50)
274 3ttc_A HYPF, transcriptional r 45.7 2.6 8.8E-05 39.8 -1.5 37 75-113 63-102 (657)
275 4iao_A NAD-dependent histone d 45.7 4.7 0.00016 37.1 0.2 32 76-107 297-330 (492)
276 2y69_F Cytochrome C oxidase su 45.6 9.3 0.00032 29.3 1.8 11 78-88 110-120 (129)
277 2kfq_A FP1; protein, de novo p 45.6 3.1 0.0001 22.0 -0.7 11 79-89 3-13 (32)
278 3cng_A Nudix hydrolase; struct 45.4 4.8 0.00016 30.4 0.2 7 101-107 26-32 (189)
279 2eon_A ZFP-95, zinc finger pro 45.0 7.4 0.00025 22.1 1.0 15 76-90 10-24 (46)
280 2eq3_A Zinc finger protein 347 45.0 7.9 0.00027 21.7 1.1 15 76-90 10-24 (46)
281 2enf_A Zinc finger protein 347 44.9 7.2 0.00025 21.9 0.9 15 76-90 10-24 (46)
282 4g9i_A Hydrogenase maturation 44.7 2.8 9.7E-05 40.0 -1.4 37 75-114 152-191 (772)
283 2enh_A Zinc finger protein 28 44.7 7.6 0.00026 21.9 1.0 14 77-90 11-24 (46)
284 3shb_A E3 ubiquitin-protein li 44.5 26 0.0009 24.0 3.9 31 78-108 41-76 (77)
285 2eou_A Zinc finger protein 473 44.0 7.3 0.00025 21.8 0.8 14 77-90 11-24 (44)
286 2ent_A Krueppel-like factor 15 43.8 37 0.0013 18.8 4.0 15 76-90 10-26 (48)
287 2em6_A Zinc finger protein 224 43.6 8 0.00027 21.8 1.0 15 76-90 10-24 (46)
288 2yrc_A Protein transport prote 43.6 4.5 0.00015 26.9 -0.2 33 77-109 8-42 (59)
289 2ri7_A Nucleosome-remodeling f 43.5 3.2 0.00011 31.6 -1.0 14 97-110 47-60 (174)
290 1t1h_A Gspef-atpub14, armadill 43.4 11 0.00038 24.3 1.8 13 96-108 4-16 (78)
291 2en9_A Zinc finger protein 28 43.3 8.5 0.00029 21.7 1.0 15 76-90 10-24 (46)
292 3gj7_B Nuclear pore complex pr 43.2 18 0.00063 26.0 3.1 28 75-110 69-96 (98)
293 2en7_A Zinc finger protein 268 43.0 7.2 0.00025 21.6 0.7 14 77-90 11-24 (44)
294 2ro1_A Transcription intermedi 42.9 20 0.00067 28.1 3.4 33 78-110 14-50 (189)
295 2fiy_A Protein FDHE homolog; F 42.9 16 0.00054 31.3 3.0 25 79-111 209-233 (309)
296 3vth_A Hydrogenase maturation 42.8 3.3 0.00011 39.6 -1.3 27 80-108 163-191 (761)
297 2ygr_A Uvrabc system protein A 42.8 12 0.0004 37.1 2.5 30 77-108 274-308 (993)
298 2eq1_A Zinc finger protein 347 42.8 7.6 0.00026 21.8 0.8 15 76-90 10-24 (46)
299 1vdd_A Recombination protein R 42.7 5.7 0.0002 33.2 0.3 29 75-113 51-79 (228)
300 2eq2_A Zinc finger protein 347 42.5 6.9 0.00023 22.0 0.5 15 76-90 10-24 (46)
301 3k1f_M Transcription initiatio 42.3 5.7 0.00019 32.6 0.2 9 100-108 42-50 (197)
302 2ep1_A Zinc finger protein 484 41.9 7.3 0.00025 21.8 0.6 15 76-90 10-24 (46)
303 2eoh_A Zinc finger protein 28 41.8 7.7 0.00026 21.9 0.7 14 77-90 11-24 (46)
304 2ecy_A TNF receptor-associated 41.7 28 0.00095 21.7 3.4 10 100-109 50-59 (66)
305 2yth_A Zinc finger protein 224 41.6 8.9 0.00031 21.6 1.0 14 77-90 11-24 (46)
306 2kwj_A Zinc finger protein DPF 41.6 14 0.00048 26.7 2.2 31 77-107 72-106 (114)
307 1pcx_A Protein transport prote 41.4 6.9 0.00024 37.4 0.6 33 78-110 112-144 (810)
308 1wil_A KIAA1045 protein; ring 41.2 14 0.0005 26.8 2.2 16 75-90 26-41 (89)
309 3ask_A E3 ubiquitin-protein li 41.1 15 0.00053 30.4 2.6 17 92-108 206-224 (226)
310 2yrm_A B-cell lymphoma 6 prote 40.7 10 0.00036 21.1 1.1 15 76-90 8-22 (43)
311 3m7n_A Putative uncharacterize 40.4 8.1 0.00028 30.1 0.8 24 80-109 142-165 (179)
312 2emz_A ZFP-95, zinc finger pro 39.7 8.7 0.0003 21.7 0.7 14 77-90 11-24 (46)
313 2ect_A Ring finger protein 126 39.6 7.4 0.00025 25.2 0.4 11 101-111 53-63 (78)
314 1j8f_A SIRT2, sirtuin 2, isofo 39.5 17 0.00059 30.9 2.8 29 78-109 159-194 (323)
315 2ab3_A ZNF29; zinc finger prot 39.2 14 0.00047 18.0 1.4 13 78-90 2-16 (29)
316 1m2v_B SEC24, protein transpor 38.7 7.9 0.00027 37.8 0.6 33 78-110 228-260 (926)
317 3eh2_A Protein transport prote 38.5 6.2 0.00021 37.5 -0.2 33 77-109 93-125 (766)
318 2yti_A Zinc finger protein 347 38.1 7.7 0.00026 21.8 0.3 14 77-90 11-24 (46)
319 3sr0_A Adenylate kinase; phosp 38.0 40 0.0014 26.2 4.5 24 77-109 123-146 (206)
320 2ecj_A Tripartite motif-contai 37.9 17 0.00059 21.8 1.9 12 78-89 15-26 (58)
321 4ayb_B DNA-directed RNA polyme 37.8 14 0.00048 36.6 2.2 34 75-114 1058-1093(1131)
322 2eom_A ZFP-95, zinc finger pro 37.8 9.7 0.00033 21.5 0.7 15 76-90 10-24 (46)
323 3efo_B SEC24 related gene fami 37.7 6.3 0.00022 37.5 -0.3 34 76-109 96-129 (770)
324 1fv5_A First zinc finger of U- 37.6 14 0.00047 21.5 1.3 15 76-90 6-20 (36)
325 2cr8_A MDM4 protein; ZF-ranbp 36.9 28 0.00094 23.1 2.8 28 74-109 7-34 (53)
326 1va1_A Transcription factor SP 36.5 21 0.00073 19.1 2.0 15 76-90 6-22 (37)
327 1wff_A Riken cDNA 2810002D23 p 36.5 27 0.00091 25.0 2.9 25 77-105 39-63 (85)
328 3eh1_A Protein transport prote 36.1 10 0.00035 35.9 0.9 34 76-110 83-116 (751)
329 1x4s_A Protein FON, zinc finge 35.1 8.3 0.00028 26.0 0.1 25 78-109 11-35 (59)
330 2ct7_A Ring finger protein 31; 34.0 30 0.001 23.6 2.8 25 80-108 27-51 (86)
331 3c5k_A HD6, histone deacetylas 33.8 20 0.00067 26.2 1.9 16 75-90 33-48 (109)
332 1wee_A PHD finger family prote 33.7 16 0.00055 24.2 1.3 13 96-108 53-65 (72)
333 3ga8_A HTH-type transcriptiona 33.3 17 0.00057 24.5 1.4 15 75-89 33-47 (78)
334 1vzi_A Desulfoferrodoxin; ferr 32.7 19 0.00065 26.9 1.7 14 76-89 5-18 (126)
335 3alr_A Nanos protein; zinc-fin 32.7 15 0.00052 27.5 1.1 12 99-110 70-81 (106)
336 2k4x_A 30S ribosomal protein S 32.6 19 0.00064 23.4 1.5 14 76-89 34-47 (55)
337 1qxf_A GR2, 30S ribosomal prot 32.6 16 0.00056 25.1 1.2 27 79-108 8-34 (66)
338 2k2d_A Ring finger and CHY zin 32.2 21 0.00072 24.8 1.8 31 78-112 37-67 (79)
339 1n0z_A ZNF265; zinc finger, RN 31.9 33 0.0011 21.4 2.5 28 76-111 12-41 (45)
340 3mkr_B Coatomer subunit alpha; 31.8 25 0.00087 30.5 2.6 26 78-109 278-303 (320)
341 1ptq_A Protein kinase C delta 31.7 22 0.00074 21.5 1.6 16 75-90 25-40 (50)
342 2enz_A NPKC-theta, protein kin 31.5 41 0.0014 21.7 3.0 17 75-91 37-53 (65)
343 1jm7_A BRCA1, breast cancer ty 31.5 7.7 0.00026 26.7 -0.6 12 100-111 58-69 (112)
344 3vdp_A Recombination protein R 31.3 11 0.00037 31.2 0.2 30 75-114 65-94 (212)
345 1d4u_A Nucleotide excision rep 30.9 39 0.0013 25.1 3.2 30 79-112 6-35 (111)
346 4ayc_A E3 ubiquitin-protein li 30.9 5.3 0.00018 29.2 -1.6 13 101-113 88-100 (138)
347 1rfh_A RAS association (ralgds 30.6 23 0.00079 22.7 1.7 16 75-90 33-48 (59)
348 3mv2_A Coatomer subunit alpha; 30.5 27 0.00094 30.4 2.6 27 77-109 286-312 (325)
349 2fnf_X Putative RAS effector N 30.4 23 0.00078 23.8 1.7 16 75-90 46-61 (72)
350 2jne_A Hypothetical protein YF 30.3 20 0.00068 26.6 1.5 31 76-115 46-76 (101)
351 3k7a_M Transcription initiatio 30.1 30 0.001 29.3 2.7 14 77-90 41-54 (345)
352 1wen_A Inhibitor of growth fam 29.9 63 0.0021 21.6 3.9 12 99-110 55-66 (71)
353 3arc_J Photosystem II reaction 29.8 43 0.0015 21.0 2.7 18 149-166 13-32 (40)
354 1bor_A Transcription factor PM 29.8 43 0.0015 20.5 2.8 10 100-109 37-46 (56)
355 2epp_A POZ-, at HOOK-, and zin 29.6 15 0.00051 24.1 0.6 16 75-90 10-25 (66)
356 3b08_B Ranbp-type and C3HC4-ty 29.3 48 0.0016 22.4 3.2 28 77-112 7-34 (64)
357 2crc_A Ubiquitin conjugating e 29.1 41 0.0014 21.7 2.7 28 76-111 8-35 (52)
358 2d8t_A Dactylidin, ring finger 29.1 28 0.00097 22.1 1.9 9 101-109 50-58 (71)
359 2yt5_A Metal-response element- 29.1 22 0.00076 22.8 1.4 34 76-109 21-61 (66)
360 1wfl_A Zinc finger protein 216 28.8 42 0.0014 23.5 2.8 23 78-104 39-61 (74)
361 2c6a_A Ubiquitin-protein ligas 28.7 36 0.0012 21.9 2.3 26 76-109 11-36 (46)
362 2vje_B MDM4 protein; proto-onc 28.6 23 0.00079 22.5 1.4 15 101-115 45-59 (63)
363 2ku3_A Bromodomain-containing 28.3 9.4 0.00032 25.9 -0.6 32 77-110 32-67 (71)
364 2k5c_A Uncharacterized protein 28.2 35 0.0012 24.8 2.4 16 76-91 49-64 (95)
365 3i2d_A E3 SUMO-protein ligase 28.2 18 0.00063 32.0 1.1 12 99-110 287-298 (371)
366 2vje_A E3 ubiquitin-protein li 28.1 26 0.00087 22.4 1.6 15 101-115 46-60 (64)
367 3l11_A E3 ubiquitin-protein li 27.9 32 0.0011 23.9 2.2 12 100-111 50-61 (115)
368 3j20_W 30S ribosomal protein S 27.8 22 0.00075 24.2 1.2 27 79-108 16-42 (63)
369 4fo9_A E3 SUMO-protein ligase 27.7 19 0.00065 31.8 1.1 12 99-110 253-264 (360)
370 2gqj_A Zinc finger protein KIA 27.7 18 0.00062 24.0 0.8 34 76-109 22-63 (98)
371 2kiz_A E3 ubiquitin-protein li 27.5 22 0.00076 22.3 1.2 8 102-109 53-60 (69)
372 1x4j_A Ring finger protein 38; 27.3 12 0.0004 24.2 -0.2 9 101-109 61-69 (75)
373 3u50_C Telomerase-associated p 27.2 14 0.00049 29.1 0.2 26 79-109 43-68 (172)
374 4bbr_M Transcription initiatio 27.2 12 0.0004 32.1 -0.3 16 75-90 39-54 (345)
375 2ckl_B Ubiquitin ligase protei 26.9 28 0.00096 25.8 1.8 11 100-110 90-100 (165)
376 1m2o_A SEC23, protein transpor 26.6 22 0.00075 33.6 1.4 34 77-110 52-87 (768)
377 3q87_A Putative uncharacterize 26.5 21 0.00071 27.2 1.0 14 77-90 98-111 (125)
378 2yu4_A E3 SUMO-protein ligase 26.4 28 0.00095 23.8 1.6 14 96-109 3-16 (94)
379 3ztg_A E3 ubiquitin-protein li 26.4 19 0.00065 23.9 0.7 13 96-108 9-21 (92)
380 1sp2_A SP1F2; zinc finger, tra 26.3 19 0.00064 18.2 0.5 11 79-89 3-15 (31)
381 1vfy_A Phosphatidylinositol-3- 26.2 26 0.0009 23.3 1.4 14 77-90 26-39 (73)
382 3htk_C E3 SUMO-protein ligase 26.2 8.7 0.0003 32.7 -1.3 27 81-108 197-228 (267)
383 1wfh_A Zinc finger (AN1-like) 26.2 67 0.0023 21.8 3.4 23 78-104 29-51 (64)
384 1x4u_A Zinc finger, FYVE domai 26.1 26 0.00088 23.9 1.4 15 76-90 28-42 (84)
385 1jm7_B BARD1, BRCA1-associated 25.8 28 0.00094 24.5 1.5 10 101-110 56-65 (117)
386 4b6d_A RAC GTPase-activating p 25.5 24 0.00082 23.2 1.0 16 75-90 32-47 (61)
387 1y02_A CARP2, FYVE-ring finger 25.4 26 0.0009 26.1 1.4 31 77-107 34-64 (120)
388 2l6l_A DNAJ homolog subfamily 25.2 15 0.00051 27.5 -0.0 28 78-108 112-141 (155)
389 2ysj_A Tripartite motif-contai 24.7 46 0.0016 20.4 2.3 15 95-109 15-29 (63)
390 3u5c_b RP61, YS20, 40S ribosom 24.6 32 0.0011 24.6 1.7 27 79-108 35-61 (82)
391 2yw8_A RUN and FYVE domain-con 24.5 29 0.001 23.6 1.4 15 76-90 33-47 (82)
392 1mzb_A Ferric uptake regulatio 24.4 26 0.00088 25.4 1.2 13 78-90 91-103 (136)
393 2i50_A Ubiquitin carboxyl-term 24.3 30 0.001 25.8 1.5 17 75-91 51-67 (126)
394 1faq_A RAF-1; transferase, ser 24.3 31 0.0011 21.0 1.4 15 77-91 26-40 (52)
395 1twf_B DNA-directed RNA polyme 24.3 27 0.00091 35.2 1.5 31 74-109 1156-1188(1224)
396 3flo_B DNA polymerase alpha ca 23.8 31 0.0011 28.0 1.6 41 69-109 13-58 (206)
397 3qqc_A DNA-directed RNA polyme 23.8 32 0.0011 30.8 1.8 27 77-109 4-32 (436)
398 3iz6_X 40S ribosomal protein S 23.8 40 0.0014 24.3 2.0 27 79-108 37-63 (86)
399 1bhi_A CRE-BP1, ATF-2; CRE bin 23.8 45 0.0016 17.4 1.9 13 78-90 6-20 (38)
400 1nui_A DNA primase/helicase; z 23.7 26 0.00087 27.9 1.1 23 79-109 15-42 (255)
401 2ghf_A ZHX1, zinc fingers and 23.6 37 0.0013 23.7 1.8 33 76-108 16-58 (102)
402 1zfd_A SWI5; DNA binding motif 23.4 23 0.00079 17.9 0.5 13 78-90 3-17 (32)
403 3u6p_A Formamidopyrimidine-DNA 23.2 21 0.0007 29.7 0.5 9 99-107 264-272 (273)
404 1ee8_A MUTM (FPG) protein; bet 23.1 26 0.00088 29.0 1.0 27 80-108 237-263 (266)
405 1z2q_A LM5-1; membrane protein 23.1 32 0.0011 23.5 1.4 15 76-90 35-49 (84)
406 1z60_A TFIIH basal transcripti 23.1 37 0.0013 22.5 1.6 10 78-87 30-39 (59)
407 2g45_A Ubiquitin carboxyl-term 22.8 51 0.0018 24.7 2.6 12 76-87 44-55 (129)
408 1x6f_A Zinc finger protein 462 22.3 42 0.0014 22.6 1.9 15 76-90 23-37 (88)
409 2enn_A NPKC-theta, protein kin 22.3 41 0.0014 22.6 1.8 16 75-90 48-63 (77)
410 2nut_A Protein transport prote 22.2 23 0.00077 33.6 0.6 34 77-110 61-96 (769)
411 2yuu_A NPKC-delta, protein kin 22.1 38 0.0013 22.9 1.6 17 75-91 42-58 (83)
412 2xzm_6 RPS27E; ribosome, trans 22.0 32 0.0011 24.5 1.2 26 80-108 34-59 (81)
413 2ckl_A Polycomb group ring fin 21.9 11 0.00037 26.2 -1.3 11 101-111 51-61 (108)
414 2ecv_A Tripartite motif-contai 21.8 43 0.0015 21.3 1.7 16 95-110 14-29 (85)
415 1k3x_A Endonuclease VIII; hydr 21.8 23 0.00079 29.2 0.5 26 80-107 236-261 (262)
416 1wfk_A Zinc finger, FYVE domai 21.8 37 0.0013 23.6 1.5 15 76-90 23-37 (88)
417 2ysl_A Tripartite motif-contai 21.6 42 0.0014 21.0 1.7 16 95-110 15-30 (73)
418 2ecw_A Tripartite motif-contai 21.6 59 0.002 20.6 2.4 10 98-107 17-26 (85)
419 3nw0_A Non-structural maintena 21.5 47 0.0016 27.0 2.3 32 77-109 192-226 (238)
420 1joc_A EEA1, early endosomal a 21.4 35 0.0012 25.2 1.4 15 76-90 83-97 (125)
421 2f42_A STIP1 homology and U-bo 21.3 31 0.0011 27.2 1.1 15 95-109 101-115 (179)
422 3eyy_A Putative iron uptake re 21.2 32 0.0011 25.4 1.1 14 77-90 89-102 (145)
423 1dvp_A HRS, hepatocyte growth 21.2 34 0.0012 27.0 1.4 15 76-90 175-189 (220)
424 3uej_A NPKC-delta, protein kin 21.2 43 0.0015 21.5 1.6 16 75-90 34-49 (65)
425 2l0b_A E3 ubiquitin-protein li 21.0 38 0.0013 22.8 1.4 8 102-109 79-86 (91)
426 1k82_A Formamidopyrimidine-DNA 20.9 24 0.00084 29.1 0.5 9 99-107 259-267 (268)
427 1tf6_A Protein (transcription 20.7 66 0.0022 23.3 2.8 14 77-90 103-118 (190)
428 3w0f_A Endonuclease 8-like 3; 20.7 28 0.00096 29.6 0.8 28 80-108 253-281 (287)
429 2xzf_A Formamidopyrimidine-DNA 20.6 25 0.00084 29.1 0.4 25 81-107 245-269 (271)
430 1y8f_A UNC-13 homolog A, MUNC1 20.6 37 0.0013 22.0 1.2 15 76-90 39-53 (66)
431 2fe3_A Peroxide operon regulat 20.5 34 0.0012 25.1 1.2 13 78-90 93-105 (145)
No 1
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=99.78 E-value=3.1e-20 Score=131.20 Aligned_cols=56 Identities=34% Similarity=0.820 Sum_probs=49.3
Q ss_pred CCCeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeCCCcccCCCChhHHHHHHHHHhhhcc
Q 040420 75 SKQAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPYTPAVTRGANDTAVRKARKEQIQRDE 141 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~~~~~~~~~n~~~v~~ar~~~~~~~~ 141 (169)
....|+|++||||||+ +|+|+++|++|+||+|+++|++|+++.... ++|+|||+||
T Consensus 4 ~m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~K~~F~~~~~~~-----------sgf~en~~yg 70 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSPKNQFKSIKKVI-----------AGFAENQKYG 70 (70)
T ss_dssp CSSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCBGGGEEECCCBC-----------CCSCCCSCCC
T ss_pred CCceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCCHHHceEccccC-----------CChhhhcccC
Confidence 3557999999999996 689999999999999999999999986433 6899999886
No 2
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=99.71 E-value=5.2e-18 Score=124.54 Aligned_cols=46 Identities=37% Similarity=0.876 Sum_probs=40.2
Q ss_pred ecCCCCeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 72 RVASKQAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 72 k~~~~~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
.......|+|.+||||||+ +|+|+++|++|+||+||++|++|+.++
T Consensus 29 ~~~~m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F~~i~ 85 (87)
T 1s24_A 29 GGKAYLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGATKEDYVLYE 85 (87)
T ss_dssp ---CCCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCCGGGEEECS
T ss_pred cccCCceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCCHHHhhhcc
Confidence 3445679999999999997 599999999999999999999999875
No 3
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=99.70 E-value=7.5e-18 Score=113.93 Aligned_cols=41 Identities=39% Similarity=1.063 Sum_probs=38.3
Q ss_pred CeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 77 QAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 77 ~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
+.|+|.+||||||+ +|+|++||++|+||+||++|++|++++
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~K~~F~~~~ 53 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVGKDEFEEVE 53 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGGGEEECC
T ss_pred CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCcHHHceEcc
Confidence 57999999999997 699999999999999999999999875
No 4
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=99.68 E-value=2.2e-17 Score=110.51 Aligned_cols=40 Identities=45% Similarity=1.101 Sum_probs=36.9
Q ss_pred CeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeC
Q 040420 77 QAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 77 ~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~ 116 (169)
..|+|++||||||+ +|+|++||++|+||+||++|++|+++
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~~F~~~ 52 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ 52 (52)
T ss_dssp CCEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCCTTSCEEC
T ss_pred CcEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCcHHHcEEC
Confidence 46999999999995 68999999999999999999999864
No 5
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=99.67 E-value=3.1e-17 Score=119.04 Aligned_cols=45 Identities=33% Similarity=0.836 Sum_probs=40.8
Q ss_pred CCCCeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeCCC
Q 040420 74 ASKQAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPYTP 118 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~~~ 118 (169)
.+...|+|++||||||+ +|+|+++|++|+||+||++|++|++++.
T Consensus 23 ~em~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~K~~F~~i~~ 78 (81)
T 2kn9_A 23 NDYKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAAKSDFEMVEV 78 (81)
T ss_dssp SCCCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCCGGGEEEECC
T ss_pred CCcceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHcEEccc
Confidence 34678999999999996 6899999999999999999999998764
No 6
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=99.67 E-value=2.5e-17 Score=111.44 Aligned_cols=41 Identities=32% Similarity=0.895 Sum_probs=38.3
Q ss_pred CeEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 77 QAYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 77 ~~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
..|+|++||||||+ +|+|+++|++|+||+||++|++|++++
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~K~~F~~~~ 53 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVGKIDFEMIE 53 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCCGGGEEECC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCCHHHceecc
Confidence 47999999999997 689999999999999999999999875
No 7
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=99.67 E-value=2.4e-17 Score=110.35 Aligned_cols=39 Identities=49% Similarity=1.209 Sum_probs=36.9
Q ss_pred eEEcCCCCeeecC-----------CCCCCCCCCCCCCCCCCCCccCeeeC
Q 040420 78 AYICRDCGYIYNE-----------RKPFDQLPDNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 78 ~y~C~~CGyVYd~-----------~tpF~~lPd~~~CPvCgapK~~F~~~ 116 (169)
.|+|++||||||+ +|+|+++|++|+||+||++|++|+++
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAPKSEFERI 51 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCBGGGEEEE
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCCHHHcEEC
Confidence 6999999999997 68999999999999999999999975
No 8
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=99.66 E-value=3e-17 Score=107.74 Aligned_cols=40 Identities=55% Similarity=1.291 Sum_probs=36.6
Q ss_pred CCeEEcCCCCeeecC---C-CCCCCCCCCCCCCCCCCCccCeee
Q 040420 76 KQAYICRDCGYIYNE---R-KPFDQLPDNYFCPVCGAPKRRFRP 115 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~---~-tpF~~lPd~~~CPvCgapK~~F~~ 115 (169)
+..|+|.+||||||+ . |+|+++|++|+||+||++|++|++
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVSKDQFSP 45 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCBGGGEEE
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCcHHHcEe
Confidence 357999999999995 2 899999999999999999999985
No 9
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=98.92 E-value=5.5e-10 Score=91.17 Aligned_cols=36 Identities=33% Similarity=0.704 Sum_probs=30.6
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeC
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~ 116 (169)
.+...|+|++|||||++ +.| |+||+||++|+.|+++
T Consensus 167 ~~~~~~~C~~CG~i~~g-----~~p--~~CP~C~~~k~~F~~~ 202 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKG-----EDF--EKCPICFRPKDTFTAY 202 (202)
T ss_dssp CSCCEEECSSSCCEEES-----SCC--SBCTTTCCBGGGCEEC
T ss_pred CCCcEEEECCCCCEEcC-----cCC--CCCCCCCCChHHheeC
Confidence 44569999999999996 346 6999999999999864
No 10
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=98.90 E-value=3.1e-10 Score=91.45 Aligned_cols=38 Identities=32% Similarity=0.890 Sum_probs=32.3
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
.....|+|++|||||++. ++|+ +||+||++|+.|+.+.
T Consensus 151 ~~~~~~~C~~CG~~~~g~----~~p~--~CP~C~~~k~~f~~~~ 188 (191)
T 1lko_A 151 EQATKWRCRNCGYVHEGT----GAPE--LCPACAHPKAHFELLG 188 (191)
T ss_dssp EEEEEEEETTTCCEEEEE----ECCS--BCTTTCCBGGGEEECC
T ss_pred CCCceEEECCCCCEeeCC----CCCC--CCCCCcCCHHHHHhHh
Confidence 345589999999999953 5799 9999999999998754
No 11
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=98.89 E-value=7.2e-10 Score=88.52 Aligned_cols=35 Identities=49% Similarity=1.201 Sum_probs=31.1
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeC
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~ 116 (169)
....|+|++|||||++ ++|+ +||+||+++++|.++
T Consensus 135 ~~~~~~C~~CG~i~~~-----~~p~--~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 135 IKKVYICPICGYTAVD-----EAPE--YCPVCGAPKEKFVVF 169 (170)
T ss_dssp CSCEEECTTTCCEEES-----CCCS--BCTTTCCBGGGCEEE
T ss_pred CCCeeEeCCCCCeeCC-----CCCC--CCCCCCCCHHHceec
Confidence 4578999999999994 5788 999999999999976
No 12
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=97.34 E-value=0.00015 Score=54.08 Aligned_cols=35 Identities=20% Similarity=0.564 Sum_probs=27.3
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCC-CCCCCCCCccCeee
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNY-FCPVCGAPKRRFRP 115 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~-~CPvCgapK~~F~~ 115 (169)
....|+|.+||++|.... ... .||.||++..++..
T Consensus 70 ~p~~~~C~~CG~~~e~~~------~~~~~CP~Cgs~~~~i~~ 105 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNA------LDYGVCEKCHSKNVIITQ 105 (119)
T ss_dssp ECCEEECSSSSCEECSCC------STTCCCSSSSSCCCEEEE
T ss_pred ccceEEcCCCCCEEeCCC------CCCCcCccccCCCcEEec
Confidence 345899999999998631 235 79999999887763
No 13
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=96.89 E-value=0.00033 Score=54.03 Aligned_cols=39 Identities=23% Similarity=0.699 Sum_probs=26.3
Q ss_pred CCCeEEcCCCCeeecCCC-----------CCCCCC----CCCCCCCCCCCccCe
Q 040420 75 SKQAYICRDCGYIYNERK-----------PFDQLP----DNYFCPVCGAPKRRF 113 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~t-----------pF~~lP----d~~~CPvCgapK~~F 113 (169)
....|+|++|||+|.... ++.-.| ....||.||++..+.
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEV 120 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEE
Confidence 345899999999998643 211111 134899999987654
No 14
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=96.51 E-value=0.0013 Score=50.76 Aligned_cols=35 Identities=29% Similarity=0.715 Sum_probs=24.9
Q ss_pred cceecCCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 69 FSMRVASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 69 ~~~k~~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..++....-.|+|..||++|+.. +..-.||.||++
T Consensus 123 ~~i~~~~~~~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 123 RGIKKVIKWRYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CCCSSCCCCCEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred hhccccccEEEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 33444445589999999999853 222389999986
No 15
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=96.32 E-value=0.0018 Score=48.81 Aligned_cols=28 Identities=29% Similarity=1.009 Sum_probs=20.6
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..|+|++|||++..+ + +.|. +||.|++.
T Consensus 66 ~p~~C~~CG~~F~~~--~-~kPs--rCP~CkSe 93 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAE--I-NIPS--RCPKCKSE 93 (105)
T ss_dssp CCCBBTTTCCBCCCC--S-SCCS--SCSSSCCC
T ss_pred ECcChhhCcCeeccc--C-CCCC--CCcCCCCC
Confidence 358999999999332 1 2366 99999984
No 16
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=95.33 E-value=0.0084 Score=39.49 Aligned_cols=30 Identities=30% Similarity=0.799 Sum_probs=21.5
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
.+|+|.-||.+++.. ..+-+|+ .+||.||-
T Consensus 2 ~iY~C~rCg~~fs~~-el~~lP~-IrCpyCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDE-QLKVLPG-VRCPYCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCC-CSCCCSS-SCCTTTCC
T ss_pred cEEEeeccCCCccHH-HHhhCCC-cccCccCc
Confidence 479999999988764 3455676 69999986
No 17
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=93.94 E-value=0.06 Score=36.71 Aligned_cols=53 Identities=23% Similarity=0.477 Sum_probs=31.6
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCCCcccCCCChhHHHHHHHHHhhhccccC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYTPAVTRGANDTAVRKARKEQIQRDEAIG 144 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~~~~~~~~n~~~v~~ar~~~~~~~~~~g 144 (169)
..-.|..|| +|. |-+ +||.||.+. ....-+++.-|+..-.-|....++.+..+
T Consensus 5 ~mr~C~~Cg-vYT-------Lk~--~CP~CG~~T-----~~~hParfSp~Dky~~yR~~~kk~~~~~~ 57 (60)
T 2apo_B 5 RMKKCPKCG-LYT-------LKE--ICPKCGEKT-----VIPKPPKFSLEDRWGKYRRMLKRALKNKN 57 (60)
T ss_dssp CCEECTTTC-CEE-------SSS--BCSSSCSBC-----BCCCCCCCCTTCTTHHHHHHHHHHHHTCC
T ss_pred hceeCCCCC-CEe-------ccc--cCcCCCCcC-----CCCCCCCCCCCcchHHHHHHHHHHhcccc
Confidence 356899999 664 234 899999853 22333455555554555555555555444
No 18
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=93.76 E-value=0.056 Score=37.62 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=22.3
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
....|+|..||..++.. ..|...||.||+
T Consensus 25 ~~v~Y~C~~CG~~~e~~-----~~d~irCp~CG~ 53 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS-----RTDAVRCKDCGH 53 (70)
T ss_dssp CCCCEECSSSCCEECCC-----TTSTTCCSSSCC
T ss_pred ceEEEECCCCCCcceeC-----CCCCccCCCCCc
Confidence 34579999999988654 134569999998
No 19
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=93.75 E-value=0.08 Score=39.21 Aligned_cols=40 Identities=25% Similarity=0.482 Sum_probs=28.6
Q ss_pred CeEEcCCCCeeecCC-----------------------CCCCCCC-CCCCCCCCCCCccCeeeC
Q 040420 77 QAYICRDCGYIYNER-----------------------KPFDQLP-DNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~-----------------------tpF~~lP-d~~~CPvCgapK~~F~~~ 116 (169)
-.|.|+.|||++... ..+..+| .+..||.||+.+..|...
T Consensus 25 ~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a~~~q~ 88 (113)
T 3h0g_I 25 LRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQT 88 (113)
T ss_dssp CCEECSSSCCEECCSCSEEEECCCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCEEEECC
T ss_pred eEEECCCCCCeEEcCCCeEEEEEEecccccccceeccccccccCCCcccCCCCCCCceEEEEEE
Confidence 479999999987641 1223344 237899999999888754
No 20
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=91.89 E-value=0.15 Score=34.78 Aligned_cols=49 Identities=24% Similarity=0.470 Sum_probs=27.7
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCCCcccCCCChhHHHHHHHHHhhhcc
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYTPAVTRGANDTAVRKARKEQIQRDE 141 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~~~~~~~~n~~~v~~ar~~~~~~~~ 141 (169)
.-.|..|| +|. |-+ +||+||.+. ..++-+++.-|+..-.-|....++.+
T Consensus 5 mr~C~~Cg-~YT-------Lk~--~CP~CG~~t-----~~ahParfSP~Dky~~yR~~lKk~~~ 53 (60)
T 2aus_D 5 IRKCPKCG-RYT-------LKE--TCPVCGEKT-----KVAHPPRFSPEDPYGEYRRRLKRELL 53 (60)
T ss_dssp CEECTTTC-CEE-------SSS--BCTTTCSBC-----EESSCCCCCSCCTTHHHHHHHHHHHT
T ss_pred ceECCCCC-CEE-------ccc--cCcCCCCcc-----CCCCCCCCCCCCchHHHHHHHHHHhc
Confidence 46899999 553 234 899999852 22233444444444444544444443
No 21
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=91.58 E-value=0.27 Score=36.79 Aligned_cols=43 Identities=23% Similarity=0.552 Sum_probs=29.8
Q ss_pred CCeEEcCCCCeeecCCC-----------------------CCCCCC-CCCCCCCCCCCccCeeeCCC
Q 040420 76 KQAYICRDCGYIYNERK-----------------------PFDQLP-DNYFCPVCGAPKRRFRPYTP 118 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~t-----------------------pF~~lP-d~~~CPvCgapK~~F~~~~~ 118 (169)
...|.|+.|||++.... .+..+| .+..||.||+.+..|.....
T Consensus 24 ~~~~~C~~C~y~~~~~~~~v~~~~~~~~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a~~~q~q~ 90 (122)
T 1twf_I 24 RLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQ 90 (122)
T ss_dssp EEEEECSSSSCEEECSCSEEEEEESSCCTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCEEEEECSS
T ss_pred CCEEECCcCCCeeecCccEEEEEeecccccccccccccccccccccccCCCCCCCCCCEEEEEEecC
Confidence 35799999999877410 122333 24789999999998886543
No 22
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=91.40 E-value=0.17 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=19.9
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCG 107 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCg 107 (169)
...|+|..||..|... +--+ ...|.||.||
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~H~~--~~~~~C~~cg 45 (45)
T 2epq_A 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDG--SVGKSGPSSG 45 (45)
T ss_dssp CCSSEETTTTEECSCHHHHHHHHHHHSC--CCCCCCCCCC
T ss_pred CCCCcCCCCCcccCCHHHHHHHHHHccC--CCCCCCcCCC
Confidence 3469999999988761 0001 2246999997
No 23
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.35 E-value=0.15 Score=35.00 Aligned_cols=28 Identities=29% Similarity=0.685 Sum_probs=21.1
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
.-.|+|..||...+... -+..+||.||.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~-----~~~iRC~~CG~ 46 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQA-----KEVIRCRECGH 46 (63)
T ss_dssp CCCCBCSSSCCBCCCCS-----SSCCCCSSSCC
T ss_pred CeEEECCCCCCeeecCC-----CCceECCCCCc
Confidence 34699999998887541 23459999998
No 24
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=90.18 E-value=0.28 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.462 Sum_probs=23.4
Q ss_pred cCCCCeEEcCCCCeeecCC------------------CCCCCCC-CCCCCCCCCC
Q 040420 73 VASKQAYICRDCGYIYNER------------------KPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 73 ~~~~~~y~C~~CGyVYd~~------------------tpF~~lP-d~~~CPvCga 108 (169)
......+.|.+|+..++++ .+-...| ++|.||.|..
T Consensus 13 ~~~~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~ 67 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67 (75)
T ss_dssp SSSCEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred ccCCCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence 3445677898898777652 1222333 6899999964
No 25
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=90.11 E-value=0.11 Score=39.94 Aligned_cols=32 Identities=19% Similarity=0.521 Sum_probs=24.1
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
.-+|..||.+|-+ ....||.|++......+..
T Consensus 47 ~~rC~~CG~~~~P--------Pr~~Cp~C~s~~~~~ve~s 78 (145)
T 3irb_A 47 GSKCSKCGRIFVP--------ARSYCEHCFVKIENYVEIN 78 (145)
T ss_dssp EEECTTTCCEEES--------CCSEETTTTEECCEEEECC
T ss_pred EEEeCCCCcEEcC--------chhhCcCCCCCceeeeeec
Confidence 5699999999864 2348999998766665554
No 26
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.72 E-value=0.13 Score=32.07 Aligned_cols=33 Identities=21% Similarity=0.621 Sum_probs=24.1
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
...|.|..||..|.....+.. ...|.|+.|+..
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~-~~~~~C~~C~~~ 48 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSR-RKTPMCEKCRKD 48 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCC-SSSCCCHHHHHT
T ss_pred CCCeeCCcccchhCCHHHhCc-CCCCCCCCCChh
Confidence 346999999999876544433 456899999864
No 27
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=89.26 E-value=0.089 Score=41.22 Aligned_cols=27 Identities=26% Similarity=0.683 Sum_probs=20.6
Q ss_pred CeEEcCCCC--eeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 77 QAYICRDCG--YIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 77 ~~y~C~~CG--yVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
+.-.|+.|+ |+|+.+ +.|+||.|++.-
T Consensus 26 ~lP~CP~C~seytYeDg-------~l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDG-------ALLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECS-------SSEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecC-------CeEECCcccccc
Confidence 346899999 778754 468999999843
No 28
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=88.44 E-value=0.17 Score=30.26 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=18.8
Q ss_pred CeEEcCCCCeeecCCCCC------CCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPF------DQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF------~~lPd~~~CPvCga 108 (169)
..|+|..||..|.....+ -.-...|.|+.|+.
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 40 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEY 40 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSC
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcc
Confidence 358999999888751000 00022379999985
No 29
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=87.94 E-value=0.34 Score=31.45 Aligned_cols=30 Identities=27% Similarity=0.749 Sum_probs=20.1
Q ss_pred CeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
..|+|..||..|... +=-+ ...|.|++||.
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~--ekp~~C~~C~k 40 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLG--YRPRSCPECGK 40 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHT--CCCEECTTTCC
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCC--CcCeECCCCCC
Confidence 459999999888761 0001 12369999986
No 30
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.92 E-value=0.44 Score=30.16 Aligned_cols=32 Identities=25% Similarity=0.667 Sum_probs=21.6
Q ss_pred CCCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
....|+|..||..|... +--+ ...|.|++|+.
T Consensus 11 ~~k~~~C~~C~k~f~~~~~L~~H~~~h~~--~~~~~C~~C~~ 50 (72)
T 1x6e_A 11 GEKPYGCVECGKAFSRSSILVQHQRVHTG--EKPYKCLECGK 50 (72)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHGGGC--SCCEECSSSCC
T ss_pred CCCCccCCCCCCccCCHHHHHHHHHhcCC--CCCeECCCCCc
Confidence 34569999999998761 1001 23479999986
No 31
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=87.61 E-value=0.36 Score=30.30 Aligned_cols=31 Identities=16% Similarity=0.493 Sum_probs=21.1
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
...|+|..||..|... +--+ ...|.|++|+.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~--~~~~~C~~C~~ 45 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCT--DRPFKCNYCSF 45 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCC--SCSEECSSSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCC--CCCEeCCCCCC
Confidence 3469999999988751 1111 23379999986
No 32
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=87.11 E-value=0.27 Score=37.88 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=24.8
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
...+|..||.++-+ ....||.|++..-..+++.
T Consensus 46 ~~~rC~~CG~~~fP--------Pr~~Cp~C~s~~~e~v~ls 78 (145)
T 2gnr_A 46 IGSKCSKCGRIFVP--------ARSYCEHCFVKIENYVEIN 78 (145)
T ss_dssp EEEECTTTCCEEES--------CCSEETTTTEECCEEEECC
T ss_pred EEEEECCCCcEEeC--------CCCCCCCCCCCccEEEEcc
Confidence 36799999999864 2338999999866666654
No 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.70 E-value=0.69 Score=26.54 Aligned_cols=15 Identities=27% Similarity=1.101 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2ytk_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp SCSEECSSSCCEESS
T ss_pred CCCEeCCcCCCccCC
Confidence 446999999988876
No 34
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=86.60 E-value=0.34 Score=30.77 Aligned_cols=33 Identities=27% Similarity=0.659 Sum_probs=21.8
Q ss_pred CCCCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 74 ASKQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
.....|+|..||..|... +--+ ...|.|++|+.
T Consensus 13 ~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~--~~~~~C~~C~k 53 (74)
T 2lce_A 13 HSDKPYKCDRCQASFRYKGNLASHKTVHTG--EKPYRCNICGA 53 (74)
T ss_dssp CCCCSBCCTTSSCCBSCHHHHHHHHHHHCC--CCSEECTTTCC
T ss_pred CCCCCeECCCCCceeCCHHHHHHHHHHcCC--CCCEECCCCCc
Confidence 344579999999888751 0001 23379999986
No 35
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=86.47 E-value=0.73 Score=26.41 Aligned_cols=29 Identities=14% Similarity=0.336 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--~k~~~C~~c 46 (46)
T 2ema_A 10 EKRYKCNECGKVFSRNSQLSQHQKIHTG--EKPSGPSSG 46 (46)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHTGGGC--CCCCSSSCC
T ss_pred CcCcCCCCCcchhCCHHHHHHHHHhcCC--CCCCCCCCC
Confidence 3469999999888761 1111 233689988
No 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=86.31 E-value=0.78 Score=26.81 Aligned_cols=31 Identities=16% Similarity=0.405 Sum_probs=20.9
Q ss_pred CCCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCG 107 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCg 107 (169)
....|+|..||..|... +--++ ..|.|++|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C~ 47 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGE--KPYSSGPSS 47 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGSCSC--CCCCSCCCC
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHhcCCC--CCccCCCCC
Confidence 34469999999998761 11112 237999997
No 37
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=85.82 E-value=0.29 Score=29.26 Aligned_cols=28 Identities=32% Similarity=0.820 Sum_probs=18.1
Q ss_pred EEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 79 y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
|+|..||..|... +--+ ...|.|+.|+.
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~ 37 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTD--VRPYHCTYCNF 37 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSS--CCCEECSSSSC
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCC--CCCccCCCCCc
Confidence 7899999888651 1001 22378999975
No 38
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.79 E-value=0.87 Score=26.17 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=19.1
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c 46 (46)
T 2emf_A 10 GKHFECTECGKAFTRKSTLSMHQKIHTGE--KPSGPSSG 46 (46)
T ss_dssp SCCEECSSSCCEESCHHHHHHHGGGTSCS--SCSCCCCC
T ss_pred CCCeECCCCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence 3469999999888761 11112 33689988
No 39
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.76 E-value=0.81 Score=26.21 Aligned_cols=15 Identities=33% Similarity=1.037 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emh_A 10 ERPYICTVCGKAFTD 24 (46)
T ss_dssp CCSEECTTTCCEESS
T ss_pred CCCcCCCCCCchhCC
Confidence 346999999988876
No 40
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.52 E-value=0.87 Score=26.07 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=19.1
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~--~~~~~C~~C 46 (46)
T 2en1_A 10 EKPFKCEECGKRFTQNSQLHSHQRVHTG--EKPSGPSSG 46 (46)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGGSC--CCCSCCCCC
T ss_pred CCCeeCCCCCcccCCHHHHHHHHHHcCC--CCCCCCCCC
Confidence 3469999999888761 1001 234789988
No 41
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=85.50 E-value=0.85 Score=26.02 Aligned_cols=29 Identities=10% Similarity=0.148 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--~k~~~C~~C 46 (46)
T 2el4_A 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTG--VKPSGPSSG 46 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHGGGSSS--CCCSCCTTC
T ss_pred CCceECCCCCchhCCHHHHHHHHHHhCC--CCCCCCCCC
Confidence 3469999999888761 1111 233689988
No 42
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.44 E-value=0.85 Score=26.03 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--~~~~~C~~C 46 (46)
T 2eme_A 10 EKPYVCDYCGKAFGLSAELVRHQRIHTG--EKPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHGGGCC--CSCCSSCCC
T ss_pred CCCeECCCCChhhCCHHHHHHHHHhcCC--CCCCCCCCC
Confidence 3469999999888761 1111 223789988
No 43
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=85.41 E-value=0.32 Score=29.43 Aligned_cols=29 Identities=17% Similarity=0.666 Sum_probs=19.3
Q ss_pred eEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
.|+|..||..|... +--+ ...|.|+.|+.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~ 38 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTN--EKPYPCGLCNR 38 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTS--SCSEECTTTCC
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCC--CCCccCCCCCC
Confidence 48999999888751 1111 23478999986
No 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.34 E-value=0.92 Score=25.96 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~--~k~~~C~~C 46 (46)
T 2em7_A 10 EKPYKCEECGKGFICRRDLYTHHMVHTG--EKPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESCHHHHHHHGGGGTT--CCCSSTTCC
T ss_pred CcCccCCCccchhCCHHHHHHHHHHhCC--CCCCCCCCC
Confidence 3469999999888761 1111 233689988
No 45
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.18 E-value=0.9 Score=26.01 Aligned_cols=15 Identities=27% Similarity=0.813 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ep2_A 10 EKPYECSICGKSFTK 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCcCCCCCCcccCC
Confidence 346999999988876
No 46
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.16 E-value=0.95 Score=25.90 Aligned_cols=15 Identities=33% Similarity=1.032 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytj_A 10 EKPYICAECGKAFTI 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCChhhCC
Confidence 346999999988876
No 47
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.04 E-value=0.97 Score=25.86 Aligned_cols=15 Identities=27% Similarity=0.981 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emp_A 10 VKPYMCNECGKAFSV 24 (46)
T ss_dssp CCSEECSSSCCEESC
T ss_pred CcCeECCCCCchhCC
Confidence 346999999988876
No 48
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=84.93 E-value=1.4 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=20.4
Q ss_pred eEEcCCCCeeecC---CCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd~~~CPvCga 108 (169)
.-.|..|..-|-. +.+...+|++|.||.|..
T Consensus 42 mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 42 MICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp EEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred EEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3456666644433 345567899999999953
No 49
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=84.87 E-value=0.54 Score=32.50 Aligned_cols=32 Identities=22% Similarity=0.534 Sum_probs=21.8
Q ss_pred CCCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
....|+|..||..|... +=-+ ...|.|+.|+.
T Consensus 25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~--~k~~~C~~C~k 64 (85)
T 2lv2_A 25 SAECHLCPVCGESFASKGAQERHLRLLHA--AQVFPCKYCPA 64 (85)
T ss_dssp CCTTEECTTSCCEESSHHHHHHHHHTTSC--SSSEECTTSSC
T ss_pred CCCCEECCCCCCCcCcHHHHhhhhhhccC--CCccCCCCCCC
Confidence 44569999999988761 1001 23479999986
No 50
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.85 E-value=0.99 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.975 Sum_probs=12.5
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2en6_A 10 EKPYGCNECGKTFSQ 24 (46)
T ss_dssp SCCEEETTTTEEESS
T ss_pred CcCeECCCCCcccCc
Confidence 446999999998876
No 51
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.70 E-value=0.97 Score=25.85 Aligned_cols=15 Identities=27% Similarity=1.101 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yu8_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CSSEECSSSCCEESS
T ss_pred CCCeECCcCCchhCC
Confidence 346999999988876
No 52
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.53 E-value=1 Score=25.80 Aligned_cols=15 Identities=27% Similarity=0.970 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emy_A 10 ENPYECHECGKAFSR 24 (46)
T ss_dssp SCCEECSSSCCEESS
T ss_pred CcCcCCCCCCcccCc
Confidence 346999999988876
No 53
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.50 E-value=1 Score=25.71 Aligned_cols=15 Identities=33% Similarity=1.037 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQ 24 (46)
T ss_dssp CCSEECTTTCCEESS
T ss_pred CCCeECCCCCcccCC
Confidence 346999999988876
No 54
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.49 E-value=0.99 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.846 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eml_A 10 EKPYECSVCGKAFSH 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCCCcCCccCC
Confidence 346999999988876
No 55
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.47 E-value=1 Score=25.85 Aligned_cols=15 Identities=33% Similarity=0.919 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em8_A 10 EKPYKCVECGKGYKR 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeECcccCchhCC
Confidence 346999999998876
No 56
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.44 E-value=1.1 Score=25.37 Aligned_cols=15 Identities=13% Similarity=0.572 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (44)
T 2emx_A 8 EKPFGCSCCEKAFSS 22 (44)
T ss_dssp CCCEECSSSSCEESS
T ss_pred CcCccCCCCCcccCC
Confidence 346999999988876
No 57
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.40 E-value=1 Score=25.63 Aligned_cols=15 Identities=20% Similarity=0.636 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2epw_A 10 EKPCKCTECGKAFCW 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCCCCCCccCC
Confidence 346999999988876
No 58
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=84.28 E-value=1 Score=25.65 Aligned_cols=15 Identities=27% Similarity=0.893 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em9_A 10 EKPYNCKECGKSFRW 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCccccccCC
Confidence 346999999988876
No 59
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.15 E-value=1.1 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.990 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytd_A 10 EKPYKCSECGKAFHR 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCCCeeCC
Confidence 346999999988876
No 60
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.00 E-value=0.78 Score=26.19 Aligned_cols=29 Identities=14% Similarity=0.342 Sum_probs=18.9
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~--~~~~~C~~C 46 (46)
T 2eoe_A 10 EKPYKCNECGKVFTQNSHLANHQRIHTG--VKPSGPSSG 46 (46)
T ss_dssp CCSSEETTTTEECSSHHHHHHHHGGGSC--CCSCSSCCC
T ss_pred CCCeECCCcChhhCCHHHHHHHHHHcCC--CCCCCCCCC
Confidence 3469999999888761 1111 233789988
No 61
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=83.94 E-value=0.74 Score=28.28 Aligned_cols=33 Identities=24% Similarity=0.649 Sum_probs=21.5
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
...|+|..||..|... +--..-...|.|+.|+.
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k 48 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFK 48 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCC
T ss_pred CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCC
Confidence 4579999999888751 10001123479999985
No 62
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=83.75 E-value=1.1 Score=25.66 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|+.|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C 46 (46)
T 2el6_A 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTRE--KPSGPSSG 46 (46)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCS--SCCSCCCC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence 3469999999988761 11112 23689888
No 63
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.75 E-value=0.79 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=18.8
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2ytn_A 10 KKPYKCNECGKVFTQNSHLARHRGIHTGE--KPSGPSSG 46 (46)
T ss_dssp CSSCBCTTTCCBCSSHHHHHHHGGGTSCC--CCCSCCCC
T ss_pred CcCeECCCCCCeeCCHHHHHHHhhhcCCC--CCCCCCCC
Confidence 3469999999887751 11112 23689988
No 64
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.64 E-value=0.74 Score=29.35 Aligned_cols=33 Identities=18% Similarity=0.597 Sum_probs=21.3
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
...|+|..||..|... .--.+-...|.|+.|+.
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~ 53 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT 53 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSC
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 3469999999988761 00001113589999985
No 65
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.53 E-value=1.1 Score=28.60 Aligned_cols=32 Identities=22% Similarity=0.764 Sum_probs=19.1
Q ss_pred CeEEcCCCCeeecCC---------CCCCC-CCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNER---------KPFDQ-LPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~---------tpF~~-lPd~~~CPvCga 108 (169)
..|+|..||+.|... .--++ .+..|.|++|+.
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~ 55 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGK 55 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCC
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCC
Confidence 458888888887651 11011 123478888875
No 66
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.49 E-value=1.2 Score=25.38 Aligned_cols=15 Identities=20% Similarity=0.698 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emm_A 10 ERPHKCNECGKSFIQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCCCCChhhCC
Confidence 346999999988876
No 67
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.23 E-value=1.2 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.793 Sum_probs=12.2
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2enc_A 10 EKPFKCEECGKGFYT 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCcCCCCCCCcCCC
Confidence 346999999988876
No 68
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.19 E-value=1.2 Score=25.46 Aligned_cols=15 Identities=27% Similarity=0.886 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2eoo_A 10 ERPYGCNECGKNFGR 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCEEccccCcccCC
Confidence 346999999988876
No 69
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=83.09 E-value=0.6 Score=29.24 Aligned_cols=33 Identities=15% Similarity=0.611 Sum_probs=20.2
Q ss_pred CCeEEcCCCCeeecCCCCC---CCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPF---DQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF---~~lPd~~~CPvCga 108 (169)
...|+|..||..|.....+ ..-...|.|+.|+.
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k 47 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCC
Confidence 4469999999876431000 00023479999986
No 70
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=82.93 E-value=0.82 Score=29.84 Aligned_cols=32 Identities=25% Similarity=0.746 Sum_probs=18.4
Q ss_pred CeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
..|+|..||+.|... +--++....|.|+.|+.
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~ 73 (95)
T 2yt9_A 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 73 (95)
T ss_dssp CSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCC
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccc
Confidence 358888888777651 00011123478888874
No 71
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=82.88 E-value=0.81 Score=37.49 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=20.7
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..+|..||.+|+....+++- ..-.||.||..
T Consensus 121 ~~~C~~C~~~~~~~~~~~~~-~~p~C~~Cgg~ 151 (249)
T 1m2k_A 121 VVRCTSCNNSFEVESAPKIP-PLPKCDKCGSL 151 (249)
T ss_dssp EEEESSSSCEEECSSCCCSS-SCCBCSSSSSB
T ss_pred eeEeCCCCCcccchhhccCC-CCCCCCCCCCC
Confidence 66899999999764332210 12379999973
No 72
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=82.80 E-value=0.85 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.802 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ely_A 10 EKPFKCVECGKGFSR 24 (46)
T ss_dssp CCSBCCSSSCCCBSS
T ss_pred CCCcccCccCcccCC
Confidence 346999999988876
No 73
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=82.54 E-value=0.9 Score=37.69 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=22.6
Q ss_pred CCCeEEcCCCCeeecC---CCCCCCCCCCCCCCCCCCCccCeee
Q 040420 75 SKQAYICRDCGYIYNE---RKPFDQLPDNYFCPVCGAPKRRFRP 115 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~---~tpF~~lPd~~~CPvCgapK~~F~~ 115 (169)
....|+|..||++..- ...| ..|. .||.|+... |..
T Consensus 131 ~~~~f~C~~C~~~~~v~~~~~~~-~~P~--~Cp~C~~~~--f~l 169 (279)
T 1ltl_A 131 VKAVFECRGCMRHHAVTQSTNMI-TEPS--LCSECGGRS--FRL 169 (279)
T ss_dssp EEEEEEETTTCCEEEEECSSSSC-CCCS--CCTTTCCCC--EEE
T ss_pred EEEEEEcCCCCCEEEEEecCCcc-cCCC--cCCCCCCCC--cEE
Confidence 3347999999965321 1122 2365 899999764 653
No 74
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.45 E-value=1.4 Score=25.12 Aligned_cols=15 Identities=33% Similarity=0.926 Sum_probs=12.2
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2yso_A 10 EKSHQCRECGEIFFQ 24 (46)
T ss_dssp CCCEECTTTCCEESS
T ss_pred CCCEEccccChhhCC
Confidence 346999999988875
No 75
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=82.41 E-value=1.1 Score=29.98 Aligned_cols=13 Identities=23% Similarity=0.715 Sum_probs=7.7
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 45 ~~~C~~C~~~f~~ 57 (106)
T 2ee8_A 45 PYTCDICHKAFRR 57 (106)
T ss_dssp CCBCSSSCCBCSC
T ss_pred CcCCCCccchhCC
Confidence 4666666666544
No 76
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.29 E-value=0.91 Score=25.90 Aligned_cols=15 Identities=33% Similarity=0.893 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2eov_A 10 EKPYKCSDCGKSFTW 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CCCccCCccChhhCC
Confidence 345999999988875
No 77
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.78 E-value=0.95 Score=26.00 Aligned_cols=15 Identities=47% Similarity=1.083 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2elz_A 10 EKPYKCEDCGKGYNR 24 (46)
T ss_dssp CSSCBCSSSCCBCSS
T ss_pred CCCeeCcccCchhCC
Confidence 346999999988875
No 78
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=81.76 E-value=0.38 Score=36.89 Aligned_cols=40 Identities=25% Similarity=0.632 Sum_probs=11.9
Q ss_pred CeEEcCCCCeeecCCC------C-----------CC------CCC-CCCCCCCCCCCccCeeeC
Q 040420 77 QAYICRDCGYIYNERK------P-----------FD------QLP-DNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~t------p-----------F~------~lP-d~~~CPvCgapK~~F~~~ 116 (169)
-.|.|+.|||+++... . -+ .+| .+..||.||..+..|...
T Consensus 45 l~~~CrtCgY~~~~~~~~v~r~~~~~~~~e~~~vv~dv~~dptlp~t~~~CpkCg~~~a~f~q~ 108 (133)
T 3qt1_I 45 LLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQL 108 (133)
T ss_dssp BCCBCSSSCCBCCCSCSEEEECCC----------------------------------------
T ss_pred eEEECCCCCCcEEcCCceEEEEEeeccccccceeEeeccccccCCcccCCCCCCCCceEEEEEE
Confidence 4799999999776410 0 00 122 247899999998888754
No 79
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.54 E-value=0.97 Score=25.86 Aligned_cols=15 Identities=20% Similarity=0.669 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2eoq_A 10 EKPFKCDICGKSFCG 24 (46)
T ss_dssp SCSCCCSSSCCCCSS
T ss_pred CCCcCCCcCCchhCC
Confidence 346999999988865
No 80
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.22 E-value=1.6 Score=24.96 Aligned_cols=15 Identities=20% Similarity=1.003 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em2_A 10 EKPFKCKECGKAFRQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCEECCcCCchhCC
Confidence 346999999988876
No 81
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.18 E-value=1.1 Score=28.52 Aligned_cols=33 Identities=21% Similarity=0.610 Sum_probs=21.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCC-CCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFD-QLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~-~lPd~~~CPvCga 108 (169)
...|+|..||..|... +--+ .-...|.|+.|+.
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k 46 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGK 46 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCC
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCc
Confidence 3469999999988751 0000 0123479999986
No 82
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=81.18 E-value=1 Score=29.46 Aligned_cols=29 Identities=21% Similarity=0.640 Sum_probs=19.5
Q ss_pred eEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
.|+|..||..|... +-.+ ...|.|+.|+.
T Consensus 3 ~~~C~~C~k~f~~~~~L~~H~~~H~~--~~~~~C~~C~k 39 (88)
T 1llm_C 3 PFQCRICMRNFSRSDHLTTHIRTHTG--EKPFACDICGR 39 (88)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHC--CCCEECTTTCC
T ss_pred CCcCCCCCCccCCHHHHHHHHHHcCC--CCCccCCCCCC
Confidence 59999999888761 0001 22379999985
No 83
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.99 E-value=1.9 Score=28.33 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=23.6
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPY 116 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~ 116 (169)
...++|+.||.. .+ +..|.|-.||+. .|.+-
T Consensus 12 ~~k~iCpkC~a~-~~-------~gaw~CrKCG~~--~lr~k 42 (51)
T 3j21_g 12 FKKYVCLRCGAT-NP-------WGAKKCRKCGYK--RLRPK 42 (51)
T ss_dssp SSEEECTTTCCE-EC-------TTCSSCSSSSSC--CCEEE
T ss_pred hCCccCCCCCCc-CC-------CCceecCCCCCc--ccccc
Confidence 357999999976 21 677999999997 55543
No 84
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=80.83 E-value=1.1 Score=28.28 Aligned_cols=32 Identities=25% Similarity=0.672 Sum_probs=20.0
Q ss_pred CeEEcCCCCeeecCCCCC------CCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPF------DQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF------~~lPd~~~CPvCga 108 (169)
..|+|..||..|.....+ -.-...|.|++|+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 65 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGK 65 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSC
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcch
Confidence 359999999988651000 00023479999975
No 85
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.77 E-value=1.4 Score=25.03 Aligned_cols=15 Identities=33% Similarity=0.913 Sum_probs=11.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (47)
T 2epx_A 10 KKPYECIECGKAFIQ 24 (47)
T ss_dssp CCSBCCSSSCCCBSS
T ss_pred CCCEECCccCchhCC
Confidence 345999999988775
No 86
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.37 E-value=1.1 Score=25.54 Aligned_cols=15 Identities=27% Similarity=0.977 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eq4_A 10 EKLYNCKECGKSFSR 24 (46)
T ss_dssp CCCCCBTTTTBCCSC
T ss_pred CCCeECCCCCCccCc
Confidence 346999999988876
No 87
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=80.35 E-value=1.3 Score=25.44 Aligned_cols=15 Identities=27% Similarity=1.063 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emk_A 10 EKPYECKECGKAFSQ 24 (46)
T ss_dssp SCSCBCSSSCCBCSC
T ss_pred CCceECCCCCchhCC
Confidence 345999999988776
No 88
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=80.14 E-value=0.98 Score=25.85 Aligned_cols=15 Identities=20% Similarity=0.937 Sum_probs=11.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2em0_A 10 EKTWKCRECDMCFSQ 24 (46)
T ss_dssp CCCCCCSSSCCCCSS
T ss_pred CcCeECCCCCcccCC
Confidence 346999999988765
No 89
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=80.07 E-value=1.2 Score=28.58 Aligned_cols=32 Identities=19% Similarity=0.601 Sum_probs=20.1
Q ss_pred CeEEcCCCCeeecCCCCC------CCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPF------DQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF------~~lPd~~~CPvCga 108 (169)
..|+|..||..|.....+ -.-...|.|+.|+.
T Consensus 33 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 70 (90)
T 1a1h_A 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGR 70 (90)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCC
T ss_pred CCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence 359999999888761000 00023479999986
No 90
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=80.02 E-value=0.86 Score=32.71 Aligned_cols=21 Identities=57% Similarity=1.317 Sum_probs=17.0
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
-|+.|++|.++ | .||.|+...
T Consensus 25 AC~~C~~v~~~--------d--~CPnCgs~~ 45 (81)
T 3p8b_A 25 ACRHCHYITSE--------D--RCPVCGSRD 45 (81)
T ss_dssp EETTTCBEESS--------S--SCTTTCCCC
T ss_pred HHhhCCCccCC--------C--CCCCCCCCc
Confidence 69999999753 3 799999854
No 91
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=79.86 E-value=0.4 Score=44.80 Aligned_cols=31 Identities=19% Similarity=0.576 Sum_probs=4.4
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
....=+|.+|||+-+-+. ..+.|.||.||..
T Consensus 537 n~~~~~C~~CGy~~~~~~----~~~~~~CP~Cg~~ 567 (605)
T 1h7b_A 537 NMPVDKCFTCGSTHEMTP----TENGFVCSICGET 567 (605)
T ss_dssp ECCEEET----------------------------
T ss_pred CCCCccCcccCCcCccCc----cccCCcCCCCCCC
Confidence 344669999998653110 0124799999964
No 92
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.53 E-value=1.1 Score=25.86 Aligned_cols=15 Identities=27% Similarity=0.990 Sum_probs=11.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytm_A 10 EKPYKCMECGKAFGD 24 (46)
T ss_dssp CCSSSBTTTTBCCSS
T ss_pred CCCcCCCCCCchhCC
Confidence 345999999988875
No 93
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.33 E-value=2.7 Score=23.83 Aligned_cols=29 Identities=14% Similarity=0.368 Sum_probs=19.2
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c 46 (46)
T 2eq0_A 10 EKPYKCHECGKVFRRNSHLARHQLIHTGE--KPSGPSSG 46 (46)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHTTTCCC--CCSCCSCC
T ss_pred CCCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence 3469999999888761 11112 23689988
No 94
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.20 E-value=2.9 Score=23.72 Aligned_cols=29 Identities=14% Similarity=0.364 Sum_probs=19.2
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2ene_A 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGE--KPSGPSSG 46 (46)
T ss_dssp SSSEECSSSCCEESSHHHHHHHHTTTCCC--CCCSCCCC
T ss_pred CCCeECCCCCchhCChHHHHHHHhhcCCC--CCCCCCCC
Confidence 3469999999988761 11112 33789988
No 95
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=79.10 E-value=0.51 Score=33.64 Aligned_cols=27 Identities=19% Similarity=0.591 Sum_probs=19.0
Q ss_pred CCeEEcCCCCe--eecCCCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGY--IYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGy--VYd~~tpF~~lPd~~~CPvCga 108 (169)
...|.|+.||- +++.. -..|.|+-|+.
T Consensus 25 ~~~y~Cp~CG~~~v~r~a------tGiW~C~~Cg~ 53 (83)
T 1vq8_Z 25 NEDHACPNCGEDRVDRQG------TGIWQCSYCDY 53 (83)
T ss_dssp HSCEECSSSCCEEEEEEE------TTEEEETTTCC
T ss_pred cccCcCCCCCCcceeccC------CCeEECCCCCC
Confidence 34789999994 34433 34689999987
No 96
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.99 E-value=2.7 Score=23.85 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=19.3
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C 46 (46)
T 2ysp_A 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGE--RPSGPSSG 46 (46)
T ss_dssp CCSEEETTTTEEESCHHHHHHHHTTSCSC--CSSCCSCC
T ss_pred CCCeECCCCCCccCCHHHHHHHHHhhCCC--CCCCCCCC
Confidence 3469999999988761 11112 23789988
No 97
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=78.65 E-value=1.5 Score=27.89 Aligned_cols=32 Identities=25% Similarity=0.738 Sum_probs=21.6
Q ss_pred CCCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
....|+|..||..|... +--+ ...|.|++|+.
T Consensus 15 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~ 54 (77)
T 2cot_A 15 ERRRYKCDECGKSFSHSSDLSKHRRTHTG--EKPYKCDECGK 54 (77)
T ss_dssp CSCSSBCSSSCCBCSCHHHHHHHHTTTCC--SCSEECSSSCC
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHcCC--CcCeeCCCCCC
Confidence 34569999999888751 1111 23479999985
No 98
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=78.57 E-value=1.3 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.618 Sum_probs=20.1
Q ss_pred CeEEcCCCCeeecCCC------CCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERK------PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~t------pF~~lPd~~~CPvCga 108 (169)
..|+|..||+.|.... ..-.-...|.|++|+.
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 72 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPY 72 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSC
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCC
Confidence 4599999999887510 0000123479999975
No 99
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.30 E-value=3 Score=23.72 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.3
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C 46 (46)
T 2em5_A 10 TKSHQCHECGRGFTLKSHLNQHQRIHTGE--KPSGPSSG 46 (46)
T ss_dssp SCSEECSSSCCEESSHHHHHHHHTTTSCS--CCSSCCCC
T ss_pred CCCeECCcCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence 3469999999988761 11112 23789988
No 100
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=78.02 E-value=2 Score=35.17 Aligned_cols=38 Identities=29% Similarity=0.582 Sum_probs=23.4
Q ss_pred CCCeEEc--CCCCeeecCC---CCCCC--CCCCCCCCCCCCCccCeee
Q 040420 75 SKQAYIC--RDCGYIYNER---KPFDQ--LPDNYFCPVCGAPKRRFRP 115 (169)
Q Consensus 75 ~~~~y~C--~~CGyVYd~~---tpF~~--lPd~~~CPvCgapK~~F~~ 115 (169)
....|+| ..||++.... ..... .|. .||.|+. ++.|..
T Consensus 138 ~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~--~Cp~C~~-~~~~~l 182 (268)
T 2vl6_A 138 YKATYKHIHPDCMQEFEWPEDEEMPEVLEMPT--ICPKCGK-PGQFRL 182 (268)
T ss_dssp EECEEEEECTTCCCEEESSTTSCCCTTCCCCS--BCTTTCC-BCEEEE
T ss_pred EEEEEECCCCCCCCEEeeeecccCCCcccCCc--cCCCCCC-CCCEEE
Confidence 3457999 9999764322 11222 254 8999997 334554
No 101
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.95 E-value=1.2 Score=30.11 Aligned_cols=13 Identities=31% Similarity=0.866 Sum_probs=8.2
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 35 ~~~C~~C~~~f~~ 47 (124)
T 2dlq_A 35 PFECPKCGKCYFR 47 (124)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCchhcC
Confidence 4667777766654
No 102
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.94 E-value=1.5 Score=29.53 Aligned_cols=32 Identities=22% Similarity=0.588 Sum_probs=20.7
Q ss_pred CeEEcCCCCeeecCCC------CCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERK------PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~t------pF~~lPd~~~CPvCga 108 (169)
..|+|..||+.|.... ..-.-...|.|++|+.
T Consensus 36 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 73 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAK 73 (110)
T ss_dssp CSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCC
T ss_pred cCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcc
Confidence 3599999999887620 0001123479999986
No 103
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=76.82 E-value=2.3 Score=27.95 Aligned_cols=15 Identities=27% Similarity=0.857 Sum_probs=9.2
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...++|..||.|+++
T Consensus 28 ~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 28 AGDMICPECGLVVGD 42 (58)
T ss_dssp SCCEECTTTCCEECC
T ss_pred CCeEEeCCCCCEEec
Confidence 345666666666654
No 104
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=75.89 E-value=2.8 Score=25.06 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=20.9
Q ss_pred CCeEEcCCCCeeecCC-----C-C-CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER-----K-P-FDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~-----t-p-F~~lPd~~~CPvCga 108 (169)
...|+|..||..|... + . .-.-...|.|++|+.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k 49 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVS 49 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCC
Confidence 3469999999888651 0 0 011123479999986
No 105
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=75.87 E-value=1.2 Score=36.40 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=20.9
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
.-+...|..||-.|.. ...++-.+++||.|.-+.+.
T Consensus 131 ~L~l~~C~~Cgg~fv~--~~~~~~~~f~Cp~C~~psRa 166 (192)
T 2avu_E 131 LLQLSSCNCCGGNFIT--HAHQPVGSFACSLCQPPSRA 166 (192)
T ss_dssp SEEEEECTTTCCEEEE--ESSCCSSCCCCTTC------
T ss_pred ceeeCcCCCCCCCeeC--ccCCCCCCCcCCCCCCcccc
Confidence 4458899999955542 22344467899999855443
No 106
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=75.84 E-value=1.1 Score=31.33 Aligned_cols=10 Identities=40% Similarity=0.803 Sum_probs=5.3
Q ss_pred eEEcCCCCee
Q 040420 78 AYICRDCGYI 87 (169)
Q Consensus 78 ~y~C~~CGyV 87 (169)
.|.|+.||..
T Consensus 26 ky~C~fCgk~ 35 (72)
T 3jyw_9 26 RYDCSFCGKK 35 (72)
T ss_dssp CBCCSSCCSS
T ss_pred CccCCCCCCc
Confidence 4555555533
No 107
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=75.81 E-value=3.9 Score=23.14 Aligned_cols=29 Identities=10% Similarity=0.070 Sum_probs=19.1
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--+ ...|.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~--~k~~~C~~C 46 (46)
T 2ep0_A 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTG--EKPSGPSSG 46 (46)
T ss_dssp CCSEECSSSCCEESSHHHHHHHHTTTSS--SCCCSCCCC
T ss_pred CCCeeCcccCcccCChHHHHHHHHHhCC--CCCCCCCCC
Confidence 3469999999888761 1111 223689988
No 108
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=75.60 E-value=3.7 Score=23.46 Aligned_cols=28 Identities=18% Similarity=0.765 Sum_probs=21.3
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
+...|.|..|.|+=.+ ....|-+|+.+.
T Consensus 3 ~~~~W~C~~CTf~N~~--------~~~~Ce~C~~~r 30 (31)
T 1nj3_A 3 TSAMWACQHCTFMNQP--------GTGHCEMCSLPR 30 (31)
T ss_dssp CSCCEECSSSCCEECS--------SCSSCSSSCCCC
T ss_pred CCccccCCcccccCCC--------CCCccCCcCCCC
Confidence 3457999999988754 334899998864
No 109
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=75.55 E-value=2.7 Score=25.14 Aligned_cols=28 Identities=25% Similarity=0.627 Sum_probs=20.8
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
+...|.|..|-+.=+ ++...|-.|..+|
T Consensus 4 ~~g~W~C~~C~~~N~--------~~~~kC~aC~tpk 31 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNK--------PEAVKCVACETPK 31 (33)
T ss_dssp --CCEECTTTCCEEC--------TTCSBCTTTCCBC
T ss_pred CCCceeCCcccCCCc--------cccCEEcccCCCC
Confidence 456799999986654 4556999999887
No 110
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=75.42 E-value=2.5 Score=28.40 Aligned_cols=33 Identities=15% Similarity=0.372 Sum_probs=22.7
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCgap 109 (169)
..-.|..|...|.. .-+..++| .+|.||.|.+.
T Consensus 23 ~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 23 DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 45677777766654 23566776 56999999753
No 111
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=75.14 E-value=1 Score=25.82 Aligned_cols=15 Identities=27% Similarity=0.939 Sum_probs=11.8
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytt_A 10 EKPYQCSECGKSFSG 24 (46)
T ss_dssp CCTTCCSSSCCCCSS
T ss_pred CCCeeCCCCCcccCC
Confidence 345999999988765
No 112
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.09 E-value=4.2 Score=22.94 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=19.0
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2en8_A 10 EKSHTCDECGKNFCYISALRIHQRVHMGE--KCSGPSSG 46 (46)
T ss_dssp CSSEECTTTCCEESSHHHHHHHHTTTCCS--CSSCCSCC
T ss_pred CCCeECCCcCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence 3469999999888761 11112 23789888
No 113
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=74.95 E-value=0.96 Score=30.59 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=19.8
Q ss_pred EEcCCCCeeecC---CCCCCCCCCCCCCCCCCCCc
Q 040420 79 YICRDCGYIYNE---RKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 79 y~C~~CGyVYd~---~tpF~~lPd~~~CPvCgapK 110 (169)
-+|..|..=|-. +..-+++|+.|.||.|...|
T Consensus 34 IqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~sK 68 (68)
T 3o70_A 34 IECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDSK 68 (68)
T ss_dssp EECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTCC
T ss_pred EECCCCCccccccccCcCcccCCCcEECCCCCCCC
Confidence 366667633333 22223578999999997654
No 114
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=74.94 E-value=3 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=21.8
Q ss_pred cCCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 73 VASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 73 ~~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
......-.|.+||...- |- .+||.||.=+++
T Consensus 25 l~~p~l~~c~~cG~~~~--------pH-~vc~~CG~Y~gr 55 (60)
T 2zjr_Z 25 LTAPNLTECPQCHGKKL--------SH-HICPNCGYYDGR 55 (60)
T ss_dssp CCCCCCEECTTTCCEEC--------TT-BCCTTTCBSSSB
T ss_pred ccCCCceECCCCCCEeC--------Cc-eEcCCCCcCCCE
Confidence 34556779999997653 32 399999975543
No 115
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=74.85 E-value=1.2 Score=31.63 Aligned_cols=22 Identities=14% Similarity=0.446 Sum_probs=17.9
Q ss_pred ceecCCCCeEEcCCCCeeecCC
Q 040420 70 SMRVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 70 ~~k~~~~~~y~C~~CGyVYd~~ 91 (169)
.++....++|+|..||+++.++
T Consensus 37 ~v~r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 37 RVDRQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp EEEEEETTEEEETTTCCEEECC
T ss_pred ceeccCCCeEECCCCCCEecCC
Confidence 3445667899999999999886
No 116
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=74.83 E-value=1.3 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=20.9
Q ss_pred CeEEcCCCCeee-cC-C--CCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIY-NE-R--KPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVY-d~-~--tpF~~lPd~~~CPvCgap 109 (169)
.-|+|+.|-|.- .. + ..-=||||. .||.||.+
T Consensus 501 phy~c~~c~~~ef~~~~~~~~g~dlp~k-~cp~cg~~ 536 (1041)
T 3f2b_A 501 PHYVCPNCKHSEFFNDGSVGSGFDLPDK-NCPRCGTK 536 (1041)
T ss_dssp SEEECTTTCCEEECCSSCCSCGGGSCCC-BCTTTCCB
T ss_pred ccccCccccccccccccccccccCCccc-cCcccccc
Confidence 369999999842 11 0 112267774 99999873
No 117
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=74.71 E-value=2.8 Score=23.85 Aligned_cols=29 Identities=14% Similarity=0.337 Sum_probs=18.9
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2ytq_A 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGE--KPSGPSSG 46 (46)
T ss_dssp CCSCBCSSSCCBCSCHHHHHHHHTTTCCS--CSSCCCCC
T ss_pred CCCcCCCccChhhCChHHHHHHHHHhCCC--CCCCCCCC
Confidence 3459999999888761 11112 23789988
No 118
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=74.69 E-value=3.7 Score=24.02 Aligned_cols=27 Identities=26% Similarity=0.598 Sum_probs=19.6
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
..|.|..||++=... .-.|-.|++++.
T Consensus 4 gDW~C~~C~~~Nfa~--------r~~C~~C~~pr~ 30 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRK--------RLKCFRCGADKF 30 (32)
T ss_dssp SEEECTTTCCEEETT--------CCBCTTTCCBTT
T ss_pred CCCCcCcCcCCcChh--------cceecCCCCcCC
Confidence 569999999773322 228999999874
No 119
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=74.68 E-value=2.5 Score=34.64 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.2
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
..++|+.||.+|.-. |.-.+...+|.+||.
T Consensus 130 ~R~~~~~~G~~Yh~~--~~pp~~~~~~d~~g~ 159 (230)
T 3gmt_A 130 GRRTHPASGRTYHVK--FNPPKVEGKDDVTGE 159 (230)
T ss_dssp TEEEETTTTEEEETT--TBCCSSTTBCTTTCC
T ss_pred cCCcccccCCccccc--CCCCCccCcCCCccC
Confidence 479999999999864 332234459999986
No 120
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=74.55 E-value=3.6 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.615 Sum_probs=21.6
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
...|.|..|-|+=.+ ....|-+|+.++.
T Consensus 6 ~~~W~C~~CT~~N~~--------~~~~Ce~C~~~r~ 33 (34)
T 3a9j_C 6 GAQWNCTACTFLNHP--------ALIRCEQCEMPRH 33 (34)
T ss_dssp CCCEECTTTCCEECT--------TCSBCTTTCCBSC
T ss_pred CCcCCCCCCccccCC--------CCCeeCCCCCcCc
Confidence 347999999988753 4458999998754
No 121
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=74.26 E-value=2.9 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=18.8
Q ss_pred CCeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
...|+|..||..|... +--++ ..|.|++|
T Consensus 10 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2eop_A 10 EKPHECRECGKSFSFNSQLIVHQRIHTGE--NPSGPSSG 46 (46)
T ss_dssp CCSCBCTTTCCBCSSHHHHHHHHTTTTTS--CCSCCCCC
T ss_pred CCCeeCCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence 3469999999887661 11112 23689988
No 122
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.08 E-value=1.5 Score=31.56 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=15.4
Q ss_pred ceecCCCCeEEcCCCCeeecCC
Q 040420 70 SMRVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 70 ~~k~~~~~~y~C~~CGyVYd~~ 91 (169)
+++.....+|+|..||+++-++
T Consensus 45 ~vkR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 45 AVKRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CEEEEETTEEEETTTCCEEECC
T ss_pred eeEecCcCeEEcCCCCCEEeCC
Confidence 4555566778888888777765
No 123
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=73.72 E-value=1.6 Score=31.99 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=13.2
Q ss_pred ceecCCCCeEEcCCCCeeecCC
Q 040420 70 SMRVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 70 ~~k~~~~~~y~C~~CGyVYd~~ 91 (169)
+++.....+|+|..||+++-++
T Consensus 46 ~vkR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 46 AVKRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp CBEEEETTEEECSSSCCEEECC
T ss_pred eeEecCcceEEcCCCCCEEeCC
Confidence 3444455667777776666654
No 124
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=73.68 E-value=1.8 Score=30.13 Aligned_cols=22 Identities=55% Similarity=1.226 Sum_probs=17.1
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
--|+.|.++.++ + .||.|+...
T Consensus 12 ~AC~~C~~~~~~--------~--~CPnC~s~~ 33 (69)
T 1ryq_A 12 KACRHCHYITSE--------D--RCPVCGSRD 33 (69)
T ss_dssp EEETTTCBEESS--------S--SCTTTCCCC
T ss_pred hhHHhCCccccC--------C--cCCCccCCc
Confidence 469999998832 3 899999653
No 125
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=73.02 E-value=1.1 Score=36.71 Aligned_cols=28 Identities=29% Similarity=0.675 Sum_probs=19.3
Q ss_pred eEEcCCCCeeecCCCCC-----CCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPF-----DQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF-----~~lPd~~~CPvCga 108 (169)
..+|..||..|+..... +++| .||.||.
T Consensus 123 ~~~C~~C~~~~~~~~~~~~~~~~~~p---~C~~Cgg 155 (253)
T 1ma3_A 123 KLDCLDCHETYDWSEFVEDFNKGEIP---RCRKCGS 155 (253)
T ss_dssp EEEETTTCCEEEGGGTHHHHHTTCCC---CCTTTCC
T ss_pred eeeeCCCCCcCcHHHHHHHhccCCCC---CCCCCCC
Confidence 67999999998753211 1233 6999997
No 126
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=73.01 E-value=3 Score=25.19 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=20.1
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
...|.|..|- |.+. ++...|..|..+|.
T Consensus 5 ~G~W~C~~C~-v~N~-------~~~~kC~aCet~Kp 32 (34)
T 3gj5_B 5 SGSWDCEVCL-VQNK-------ADSTKCIACESAKP 32 (34)
T ss_dssp -CCEECTTTC-CEEC-------SSCSBCTTTCCBC-
T ss_pred CCceECCeeE-eECc-------cccCEEcccCCcCC
Confidence 4579999997 4433 45569999999874
No 127
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=72.85 E-value=1.4 Score=33.43 Aligned_cols=9 Identities=33% Similarity=0.922 Sum_probs=5.2
Q ss_pred eEEcCCCCe
Q 040420 78 AYICRDCGY 86 (169)
Q Consensus 78 ~y~C~~CGy 86 (169)
.|.|+.||.
T Consensus 60 kytCPfCGk 68 (116)
T 3cc2_Z 60 DHACPNCGE 68 (116)
T ss_dssp CEECSSSCC
T ss_pred CCcCCCCCC
Confidence 466666663
No 128
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.83 E-value=1.2 Score=27.91 Aligned_cols=8 Identities=38% Similarity=1.057 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 040420 101 YFCPVCGA 108 (169)
Q Consensus 101 ~~CPvCga 108 (169)
++|+.||.
T Consensus 25 lvC~~CG~ 32 (50)
T 1pft_A 25 IVCAKCGY 32 (50)
T ss_dssp EEESSSCC
T ss_pred EECcccCC
Confidence 45555554
No 129
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.78 E-value=5.2 Score=22.60 Aligned_cols=15 Identities=27% Similarity=1.010 Sum_probs=12.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ep3_A 10 EKPYRCAECGKAFTD 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeECCCCCchhCC
Confidence 346999999988876
No 130
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=72.69 E-value=3.3 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=18.4
Q ss_pred CeEEcCCCCeeecCC--------CCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNER--------KPFDQLPDNYFCPVC 106 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvC 106 (169)
..|+|..||..|... +--++ ..|.|++|
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C 46 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGE--KPSGPSSG 46 (46)
T ss_dssp CSBCCTTTCCCBSSHHHHHHHHTTTTTC--CCCSSCCC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence 459999999888751 11112 33789988
No 131
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=72.57 E-value=2.6 Score=26.19 Aligned_cols=32 Identities=16% Similarity=0.520 Sum_probs=20.7
Q ss_pred CCCeEEcC--CCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 75 SKQAYICR--DCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 75 ~~~~y~C~--~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
....|+|. .||..|... +--+ ...|.|++|+.
T Consensus 16 ~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~--~~~~~C~~C~~ 57 (73)
T 1f2i_G 16 KMRPYACPVESCDRRFSRSDELTRHIRIHTG--QKPFQCRICMR 57 (73)
T ss_dssp CCCCEECSSTTBCCEESSHHHHHHHHHHHHC--CCCEECTTTCC
T ss_pred CCCccCCcCCCCCCccCCHHHHHHHHHhhCC--CCCeECCCCCc
Confidence 34469997 699988751 0001 23379999986
No 132
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=72.26 E-value=1.9 Score=21.56 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=8.9
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.|+|..||..|.
T Consensus 3 ~~~C~~C~k~f~ 14 (27)
T 2kvh_A 3 PFSCSLCPQRSR 14 (27)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCcChhhC
Confidence 478888887764
No 133
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=71.26 E-value=2.1 Score=21.36 Aligned_cols=12 Identities=33% Similarity=0.974 Sum_probs=9.0
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.|+|..||..|.
T Consensus 3 ~~~C~~C~~~f~ 14 (30)
T 2m0d_A 3 PYQCDYCGRSFS 14 (30)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCcccC
Confidence 478888887764
No 134
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=70.85 E-value=1.7 Score=30.42 Aligned_cols=22 Identities=27% Similarity=0.709 Sum_probs=13.9
Q ss_pred ceecCCCCeEEcCCCCeeecCC
Q 040420 70 SMRVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 70 ~~k~~~~~~y~C~~CGyVYd~~ 91 (169)
.++.....+|+|..||+++-++
T Consensus 37 ~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 37 KLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred eeEEEEeEEEECCCCCcEEECC
Confidence 4445556677777777776554
No 135
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=70.76 E-value=0.83 Score=39.98 Aligned_cols=29 Identities=31% Similarity=0.788 Sum_probs=19.5
Q ss_pred eEEcCCCCeeecCCC--------CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERK--------PFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~t--------pF~~lPd~~~CPvCgap 109 (169)
.++|..||.+|+... +.+.+ -.||.||..
T Consensus 144 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~---P~Cp~Cgg~ 180 (361)
T 1q14_A 144 HCHCIGCGKVYPPQVFKSKLAEHPIKDF---VKCDVCGEL 180 (361)
T ss_dssp EEEETTTCCEECTHHHHHHTTSSSCSCC---CBCTTTCCB
T ss_pred ccCcCCCCccCcHHHHHHHHhhcccCCC---CCCcCCCCE
Confidence 679999999997521 11112 379999963
No 136
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=70.71 E-value=1.5 Score=36.72 Aligned_cols=29 Identities=31% Similarity=0.780 Sum_probs=19.3
Q ss_pred eEEcCCCCeeecCCC--------CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERK--------PFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~t--------pF~~lPd~~~CPvCgap 109 (169)
..+|..||.+|+... +-+.+| .||.||..
T Consensus 136 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~P---~C~~Cgg~ 172 (289)
T 1q1a_A 136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFV---KCDVCGEL 172 (289)
T ss_dssp EEEETTTCCEECHHHHHHHHTCSSCCSCC---BCTTTCCB
T ss_pred ceEECCCCCCCcHHHHHHHHhhccCCCCc---cCCCCCCE
Confidence 679999999987421 111222 79999963
No 137
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=70.59 E-value=2 Score=31.42 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=11.3
Q ss_pred eecCCCCeEEcCCCCeeecCC
Q 040420 71 MRVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 71 ~k~~~~~~y~C~~CGyVYd~~ 91 (169)
++.....+|.|..||+++-++
T Consensus 47 vkR~a~GIW~C~~C~~~~AGG 67 (92)
T 3izc_m 47 VKRGAAGIWTCSCCKKTVAGG 67 (92)
T ss_dssp CEEEETTEEECTTTCCEEECC
T ss_pred eeecccceEEcCCCCCEEeCC
Confidence 334445556666666555553
No 138
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=70.31 E-value=3.2 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.689 Sum_probs=17.9
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
...|+|..||++=-.. .-.|=.|++++.
T Consensus 4 ~gDW~C~~C~~~Nfa~--------R~~C~~C~~pk~ 31 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWAR--------RSECNMCNTPKY 31 (33)
T ss_dssp SSSCBCSSSCCBCCTT--------CSBCSSSCCBTT
T ss_pred CCCcccCCCCCccccc--------cccccccCCcCC
Confidence 3458888888663322 227888888763
No 139
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=69.82 E-value=2.6 Score=35.71 Aligned_cols=31 Identities=26% Similarity=0.467 Sum_probs=18.9
Q ss_pred eEEcCCCCeeecCCCCCC----CCC--CCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFD----QLP--DNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~----~lP--d~~~CPvCgap 109 (169)
..+|..||..|+....+. ..+ .-..|| ||..
T Consensus 154 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~P~C~-Cgg~ 190 (290)
T 3u31_A 154 EAVCCTCNKIVKLNKIMLQKTSHFMHQLPPECP-CGGI 190 (290)
T ss_dssp EEEETTTCCEEECCTGGGSTTSSTTTSSSCBCT-TSCB
T ss_pred cceeCCCCCcCChhHhhhcccccccccCCCCCC-CCCE
Confidence 679999999987532211 000 113799 9863
No 140
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=69.78 E-value=2.3 Score=28.56 Aligned_cols=20 Identities=40% Similarity=1.320 Sum_probs=15.9
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
-|+.|++|.+. + .||.|+..
T Consensus 3 AC~~C~~v~~~--------~--~CpnC~~~ 22 (59)
T 3lpe_B 3 ACLKCKYLTND--------E--ICPICHSP 22 (59)
T ss_dssp EETTTCBEESS--------S--BCTTTCCB
T ss_pred ccccCCcccCC--------C--CCCCCCCC
Confidence 49999999743 3 79999974
No 141
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=69.52 E-value=2 Score=32.03 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=9.7
Q ss_pred ecCCCCeEEcCCCCeeecCC
Q 040420 72 RVASKQAYICRDCGYIYNER 91 (169)
Q Consensus 72 k~~~~~~y~C~~CGyVYd~~ 91 (169)
+.....+|.|..||+++-++
T Consensus 48 KR~a~GIW~C~kCg~~~AGG 67 (103)
T 4a17_Y 48 KRAAVGIWKCKPCKKIIAGG 67 (103)
T ss_dssp EEEETTEEEETTTTEEEECC
T ss_pred eecCcceEEcCCCCCEEeCC
Confidence 33344455555555555443
No 142
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=69.44 E-value=2.1 Score=21.22 Aligned_cols=13 Identities=31% Similarity=0.940 Sum_probs=9.7
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2m0f_A 2 PLKCRECGKQFTT 14 (29)
T ss_dssp CEECTTTSCEESC
T ss_pred CccCCCCCCccCC
Confidence 4789999877753
No 143
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=69.18 E-value=3.1 Score=23.49 Aligned_cols=15 Identities=27% Similarity=1.023 Sum_probs=11.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytr_A 10 EKPYKCNECGKAFSQ 24 (46)
T ss_dssp CCTTCCTTTCCCCSS
T ss_pred CcCcCCCCCCCccCC
Confidence 345999999988765
No 144
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.96 E-value=6.6 Score=24.27 Aligned_cols=33 Identities=21% Similarity=0.773 Sum_probs=22.4
Q ss_pred CCeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCga 108 (169)
...-.|..|...|-. .-+..++| ++|.||.|..
T Consensus 13 ~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 13 DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 345678888877643 22455666 4799999964
No 145
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.84 E-value=5.6 Score=25.88 Aligned_cols=29 Identities=17% Similarity=0.541 Sum_probs=22.5
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
...|.|..|.|+=.. ....|-+|+.++..
T Consensus 9 ~~~W~C~~CT~~N~~--------~~~~C~~C~~pr~~ 37 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSA--------EAFKCMMCDVRKGT 37 (53)
T ss_dssp CCCEECSSSCCEECS--------SCSSCSSSCCCCCC
T ss_pred CCCcCCCCCccCCCC--------CCCccCCCCCcCCc
Confidence 347999999988754 33489999998764
No 146
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=68.83 E-value=2.4 Score=21.17 Aligned_cols=12 Identities=33% Similarity=0.952 Sum_probs=8.8
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.|+|..||..|.
T Consensus 3 ~~~C~~C~k~f~ 14 (28)
T 2kvf_A 3 PYSCSVCGKRFS 14 (28)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCCCcccC
Confidence 478888887764
No 147
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.51 E-value=2.9 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.676 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 8 KPFKCSLCEYATRS 21 (36)
T ss_dssp CSEECSSSSCEESC
T ss_pred CCccCCCCCchhCC
Confidence 45888888877753
No 148
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=68.31 E-value=2.9 Score=22.12 Aligned_cols=14 Identities=21% Similarity=0.769 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 6 k~~~C~~C~k~f~~ 19 (35)
T 1srk_A 6 RPFVCRICLSAFTT 19 (35)
T ss_dssp SCEECSSSCCEESS
T ss_pred cCeeCCCCCcccCC
Confidence 35888888877753
No 149
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.23 E-value=2.9 Score=22.34 Aligned_cols=13 Identities=15% Similarity=0.848 Sum_probs=10.1
Q ss_pred CeEEcCCCCeeec
Q 040420 77 QAYICRDCGYIYN 89 (169)
Q Consensus 77 ~~y~C~~CGyVYd 89 (169)
..|+|..||..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 4588999988774
No 150
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=68.21 E-value=4.6 Score=27.04 Aligned_cols=30 Identities=23% Similarity=0.590 Sum_probs=20.6
Q ss_pred cCCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 73 VASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 73 ~~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
......-.|..||...- |- .+||.||.=++
T Consensus 25 l~~p~l~~c~~cGe~~~--------~H-~vc~~CG~Y~g 54 (60)
T 3v2d_5 25 LTPPTLVPCPECKAMKP--------PH-TVCPECGYYAG 54 (60)
T ss_dssp CCCCCCEECTTTCCEEC--------TT-SCCTTTCEETT
T ss_pred ccCCceeECCCCCCeec--------ce-EEcCCCCcCCC
Confidence 34456789999996553 32 38999996443
No 151
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.00 E-value=3.1 Score=22.22 Aligned_cols=14 Identities=21% Similarity=0.551 Sum_probs=9.8
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elv_A 8 LLYDCHICERKFKN 21 (36)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCCccCC
Confidence 35888888877643
No 152
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=67.91 E-value=2.3 Score=21.23 Aligned_cols=13 Identities=15% Similarity=0.664 Sum_probs=10.0
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 1rik_A 2 KFACPECPKRFMR 14 (29)
T ss_dssp CEECSSSSCEESC
T ss_pred CccCCCCCchhCC
Confidence 3889999987754
No 153
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=67.69 E-value=1.7 Score=35.41 Aligned_cols=29 Identities=24% Similarity=0.669 Sum_probs=19.2
Q ss_pred eEEcCCCCeeecCCC-----CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERK-----PFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~t-----pF~~lPd~~~CPvCgap 109 (169)
..+|..||..|+... .-+.+| .||.||..
T Consensus 121 ~~~C~~C~~~~~~~~~~~~~~~~~~p---~C~~Cgg~ 154 (246)
T 1yc5_A 121 EYYCVRCEKKYTVEDVIKKLESSDVP---LCDDCNSL 154 (246)
T ss_dssp EEEETTTCCEEEHHHHHHHTTTCSSC---BCTTTCCB
T ss_pred eeEcCCCCCCCcHHHHHHHhccCCCC---CCCCCCCc
Confidence 679999999987421 101223 79999973
No 154
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=67.61 E-value=5.6 Score=25.94 Aligned_cols=31 Identities=29% Similarity=0.924 Sum_probs=18.8
Q ss_pred EEcCCCCeeecC---CCCCCCCC-CCCCCCCCCCC
Q 040420 79 YICRDCGYIYNE---RKPFDQLP-DNYFCPVCGAP 109 (169)
Q Consensus 79 y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCgap 109 (169)
-.|..|...|-. .-|..++| .+|.||.|...
T Consensus 22 l~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 22 LCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp BCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred EEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 345555555443 22455666 57999999764
No 155
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=67.58 E-value=1.6 Score=30.28 Aligned_cols=24 Identities=29% Similarity=0.883 Sum_probs=14.8
Q ss_pred eEEcCCCC-eeecCCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCG-YIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CG-yVYd~~tpF~~lPd~~~CPvCga 108 (169)
+.+|. || +.|.... +..-.|| ||.
T Consensus 4 vv~C~-C~~~~~~~~~-----~kT~~C~-CG~ 28 (71)
T 1gh9_A 4 IFRCD-CGRALYSREG-----AKTRKCV-CGR 28 (71)
T ss_dssp EEEET-TSCCEEEETT-----CSEEEET-TTE
T ss_pred EEECC-CCCEEEEcCC-----CcEEECC-CCC
Confidence 57898 99 3333321 3445898 987
No 156
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=67.35 E-value=1.9 Score=28.60 Aligned_cols=38 Identities=16% Similarity=0.481 Sum_probs=24.5
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCCCccCee
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGAPKRRFR 114 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCgapK~~F~ 114 (169)
..-.|..|...|-. +-|..++| .+|.||.|...+.+..
T Consensus 19 ~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~~ 60 (66)
T 1xwh_A 19 ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEV 60 (66)
T ss_dssp SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCCC
T ss_pred CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccccC
Confidence 34567777766654 23455666 5799999987665444
No 157
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=67.34 E-value=2.6 Score=30.72 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=7.2
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 22 ~y~C~~C~k~F~~ 34 (133)
T 2lt7_A 22 YYICIVCKRSYVC 34 (133)
T ss_dssp EEEETTTCCEESC
T ss_pred CeECCCCCCCcCC
Confidence 4566666655544
No 158
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=67.09 E-value=3.5 Score=29.14 Aligned_cols=8 Identities=0% Similarity=-0.018 Sum_probs=4.3
Q ss_pred eEEcCCCC
Q 040420 78 AYICRDCG 85 (169)
Q Consensus 78 ~y~C~~CG 85 (169)
.|.|.+|+
T Consensus 22 ~~~CpI~~ 29 (98)
T 1wgm_A 22 EFLDPIMS 29 (98)
T ss_dssp TTBCTTTC
T ss_pred hcCCcCcc
Confidence 35555554
No 159
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=66.76 E-value=2.5 Score=21.33 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=10.3
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (27)
T 2kvg_A 3 PYRCPLCRAGCPS 15 (27)
T ss_dssp TEEETTTTEEESC
T ss_pred CcCCCCCCcccCC
Confidence 4899999987753
No 160
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.63 E-value=3.1 Score=22.03 Aligned_cols=14 Identities=29% Similarity=0.785 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 8 KPYKCPQCSYASAI 21 (36)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCCCCCCCCcccCC
Confidence 35888888877753
No 161
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=66.09 E-value=3.2 Score=21.74 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=9.4
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 7 ~~~C~~C~k~f~~ 19 (35)
T 2elx_A 7 GYVCALCLKKFVS 19 (35)
T ss_dssp SEECSSSCCEESS
T ss_pred CeECCCCcchhCC
Confidence 4888888877643
No 162
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=65.94 E-value=3.8 Score=30.20 Aligned_cols=11 Identities=36% Similarity=1.186 Sum_probs=5.3
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 134 ~~C~~C~~~f~ 144 (190)
T 2i13_A 134 YKCPECGKSFS 144 (190)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 45555554443
No 163
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.80 E-value=3.9 Score=27.59 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=7.4
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 19 ~~~C~~C~k~f~~ 31 (115)
T 2dmi_A 19 KFRCKDCSAAYDT 31 (115)
T ss_dssp SEEBSSSSCEESS
T ss_pred CEECCccCchhcC
Confidence 3666666655543
No 164
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=65.29 E-value=6.3 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.763 Sum_probs=19.8
Q ss_pred CeEEcCC--CCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRD--CGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~--CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
..|+|.. ||..|... +--+ ...|.|++|+.
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~--~~~~~C~~C~k 76 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSD--TRDYICEFSGP 76 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHHHHHT--SCCCSCCSSSC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHHHhCC--CCCeeCCCCCC
Confidence 4599998 99888761 0001 13379999985
No 165
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.63 E-value=7.3 Score=25.07 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=24.0
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCee
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
.....|.|..|-..=+ .+...|..|+.+|..-.
T Consensus 7 ~~~g~W~C~~C~v~N~--------a~~~kC~aCetpKpgs~ 39 (47)
T 2ebq_A 7 GVIGTWDCDTCLVQNK--------PEAIKCVACETPKPGTC 39 (47)
T ss_dssp CCSSSEECSSSCCEEC--------SSCSBCSSSCCBCSCSS
T ss_pred CCCCceECCeeeccCc--------cCCceecCcCCCCCCCc
Confidence 3446799999974443 34559999999987654
No 166
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=64.10 E-value=3.4 Score=24.64 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=11.8
Q ss_pred CCeEEcCCCCeeec
Q 040420 76 KQAYICRDCGYIYN 89 (169)
Q Consensus 76 ~~~y~C~~CGyVYd 89 (169)
.+.|+|..||.|..
T Consensus 4 ~~fY~C~~CGnive 17 (36)
T 1dxg_A 4 GDVYKCELCGQVVK 17 (36)
T ss_dssp TCEEECTTTCCEEE
T ss_pred ccEEEcCCCCcEEE
Confidence 46899999998875
No 167
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.97 E-value=3.2 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=7.6
Q ss_pred CCeEEcCCCCeee
Q 040420 76 KQAYICRDCGYIY 88 (169)
Q Consensus 76 ~~~y~C~~CGyVY 88 (169)
...|.|..|||+|
T Consensus 35 ~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 35 GDRWACGKCGYTE 47 (50)
T ss_dssp SSEEECSSSCCEE
T ss_pred CCeEECCCCCCEE
Confidence 3456666666654
No 168
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=67.75 E-value=1.4 Score=21.85 Aligned_cols=13 Identities=31% Similarity=1.050 Sum_probs=9.8
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 2 p~~C~~C~k~f~~ 14 (26)
T 2lvu_A 2 PYVCERCGKRFVQ 14 (26)
Confidence 3788899877754
No 169
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.87 E-value=4.3 Score=22.06 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=10.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elm_A 8 HLYYCSQCHYSSIT 21 (37)
T ss_dssp CEEECSSSSCEEEC
T ss_pred cCeECCCCCcccCC
Confidence 45899999977743
No 170
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=63.34 E-value=2 Score=21.42 Aligned_cols=11 Identities=18% Similarity=0.902 Sum_probs=7.7
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 67777776654
No 171
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=63.33 E-value=2 Score=21.24 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=7.0
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777776553
No 172
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=63.15 E-value=4.7 Score=27.50 Aligned_cols=16 Identities=19% Similarity=0.536 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCC
Q 040420 93 PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 93 pF~~lPd~~~CPvCga 108 (169)
.+.++|+.+.||+|+.
T Consensus 7 ~~~~~p~~~~CpI~~~ 22 (85)
T 2kr4_A 7 DYSDAPDEFRDPLMDT 22 (85)
T ss_dssp CCTTCCTTTBCTTTCS
T ss_pred hhhcCchheECcccCc
Confidence 3445666667777654
No 173
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.79 E-value=4.8 Score=25.86 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=23.3
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCee
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
....|.|..|- |.+. .+...|..|+.+|..-.
T Consensus 8 ~~gsW~C~~C~-v~N~-------a~~~kC~aC~~pkpg~~ 39 (47)
T 2ebr_A 8 PEGSWDCELCL-VQNK-------ADSTKCLACESAKPGTK 39 (47)
T ss_dssp CCSSCCCSSSC-CCCC-------SSCSBCSSSCCBCCCCC
T ss_pred CCCeeECCeee-cCCc-------CCcceecCcCCCCCCCc
Confidence 34579999997 4332 35569999999987654
No 174
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=62.78 E-value=5.1 Score=31.20 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=18.8
Q ss_pred eEEcCCCCeeecC---CCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd~~~CPvCgap 109 (169)
.|+|..||+.-.. ..|.....+...||.||.+
T Consensus 78 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~~ 112 (166)
T 3ir9_A 78 TTKCSVCGYENKWTRRWKPGEPAPAAGNCPKCGSS 112 (166)
T ss_dssp EEEESSSSCEEEEEECCCC--CCCCCCBCTTTCCB
T ss_pred EEECCCCCceeEEEeecChhhcccccccccccCcc
Confidence 5899999975311 1111111234589999985
No 175
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=62.75 E-value=4.3 Score=28.03 Aligned_cols=33 Identities=18% Similarity=0.527 Sum_probs=20.7
Q ss_pred CCeEEcCCCCeeecCCCCCC----CCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFD----QLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~----~lPd~~~CPvCga 108 (169)
...|+|..||..|.....+. .-...|.|+.|+.
T Consensus 72 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k 108 (129)
T 2wbt_A 72 ISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK 108 (129)
T ss_dssp HCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCC
T ss_pred CCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCc
Confidence 34699999999886520000 0012379999986
No 176
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=62.70 E-value=1.9 Score=28.05 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 040420 98 PDNYFCPVCGAP 109 (169)
Q Consensus 98 Pd~~~CPvCgap 109 (169)
++.|.||.|...
T Consensus 47 ~~~~~C~~C~~k 58 (64)
T 1we9_A 47 IKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCHHHHTT
T ss_pred CCcEECCCCcCc
Confidence 578999999653
No 177
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.00 E-value=4.7 Score=21.60 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=8.8
Q ss_pred CeEEcCCCCeeec
Q 040420 77 QAYICRDCGYIYN 89 (169)
Q Consensus 77 ~~y~C~~CGyVYd 89 (169)
..|+|..||..|.
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elp_A 8 RAMKCPYCDFYFM 20 (37)
T ss_dssp CCEECSSSSCEEC
T ss_pred CCeECCCCChhhc
Confidence 3477877876664
No 178
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.90 E-value=2.8 Score=22.26 Aligned_cols=12 Identities=25% Similarity=0.811 Sum_probs=7.7
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.|+|..||..|.
T Consensus 9 ~~~C~~C~k~f~ 20 (36)
T 2elr_A 9 THLCDMCGKKFK 20 (36)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeecCcCCCCcC
Confidence 467777776553
No 179
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.70 E-value=3.3 Score=22.19 Aligned_cols=14 Identities=29% Similarity=0.778 Sum_probs=10.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 8 k~~~C~~C~k~f~~ 21 (37)
T 2elo_A 8 RSYSCPVCEKSFSE 21 (37)
T ss_dssp CCCEETTTTEECSS
T ss_pred CCcCCCCCCCccCC
Confidence 35888888877643
No 180
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=60.99 E-value=7.5 Score=30.67 Aligned_cols=33 Identities=15% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEcCCCCeeecCC---CCCCCCC-CCCCCCCCCCCc
Q 040420 78 AYICRDCGYIYNER---KPFDQLP-DNYFCPVCGAPK 110 (169)
Q Consensus 78 ~y~C~~CGyVYd~~---tpF~~lP-d~~~CPvCgapK 110 (169)
.-.|..|...|... -|..++| .+|.||.|...+
T Consensus 19 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 19 LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 44677777666542 2455566 569999998754
No 181
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=60.68 E-value=8.9 Score=23.65 Aligned_cols=17 Identities=29% Similarity=0.710 Sum_probs=13.5
Q ss_pred CCCCeEEcCC--CCeeecC
Q 040420 74 ASKQAYICRD--CGYIYNE 90 (169)
Q Consensus 74 ~~~~~y~C~~--CGyVYd~ 90 (169)
.....|+|.. ||..|..
T Consensus 13 ~~~~~~~C~~~~C~k~f~~ 31 (72)
T 2epa_A 13 SRIRSHICSHPGCGKTYFK 31 (72)
T ss_dssp CCCCCEECSSTTTCCEESS
T ss_pred cccCceeCCCCCCccccCC
Confidence 4455799988 9999875
No 182
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=60.66 E-value=3 Score=22.33 Aligned_cols=12 Identities=25% Similarity=0.910 Sum_probs=7.8
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.|+|..||..|.
T Consensus 11 ~~~C~~C~k~f~ 22 (37)
T 1p7a_A 11 PFQCPDCDRSFS 22 (37)
T ss_dssp SBCCTTTCCCBS
T ss_pred CccCCCCCcccC
Confidence 477777776553
No 183
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=60.50 E-value=3.5 Score=28.19 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=21.3
Q ss_pred CCeEEcCCCCeee-cCC--------CCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIY-NER--------KPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVY-d~~--------tpF~~lPd~~~CPvCgap 109 (169)
...|.|..||..| ... +- ++ ..|.|++|+..
T Consensus 32 ~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~--k~~~C~~Cgk~ 71 (96)
T 2ctd_A 32 KGSVSCPTCQAVGRKTIEGLKKHMENC-KQ--EMFTCHHCGKQ 71 (96)
T ss_dssp TSCEECTTTCSCEESSHHHHHHHHHHH-CC--CCCCCSSSCCC
T ss_pred CCCcCCCCCCCCcccCHHHHHHHHHHH-CC--CCeECCCCCCe
Confidence 4469999999999 541 11 22 34699999863
No 184
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=60.30 E-value=2.1 Score=21.33 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=7.7
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 67777876654
No 185
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=60.21 E-value=2.1 Score=21.18 Aligned_cols=11 Identities=27% Similarity=0.697 Sum_probs=7.3
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 67777776553
No 186
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=60.19 E-value=3.5 Score=34.89 Aligned_cols=29 Identities=28% Similarity=0.648 Sum_probs=19.4
Q ss_pred eEEcCCCCeeecCCC-----CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERK-----PFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~t-----pF~~lPd~~~CPvCgap 109 (169)
..+|..||..|+... .-+.+| .||.||..
T Consensus 139 ~~~C~~C~~~~~~~~~~~~i~~~~~P---~C~~Cgg~ 172 (285)
T 3glr_A 139 SATCTVCQRPFPGEDIRADVMADRVP---RCPVCTGV 172 (285)
T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCC---BCTTTCCB
T ss_pred eEEECCCCCcCCHHHHHHHhhcCCCC---CCCCCCCc
Confidence 569999999987532 111223 69999863
No 187
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=60.14 E-value=8.1 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.634 Sum_probs=23.2
Q ss_pred eEEcCCCCeeecCC---CCCCCCC-CCCCCCCCCCCcc
Q 040420 78 AYICRDCGYIYNER---KPFDQLP-DNYFCPVCGAPKR 111 (169)
Q Consensus 78 ~y~C~~CGyVYd~~---tpF~~lP-d~~~CPvCgapK~ 111 (169)
.-.|..|...|... -+...+| ++|.||.|...+.
T Consensus 16 ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 16 LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred eeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 55777788777652 2455666 4699999987553
No 188
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=59.76 E-value=1.9 Score=40.21 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=0.0
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCC-CCCCCCCCCCCCcc
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQL-PDNYFCPVCGAPKR 111 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~l-Pd~~~CPvCgapK~ 111 (169)
.....|+|.+|++.=....+|+.. -.--.|-.||.+..
T Consensus 113 ~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~ 151 (566)
T 1w7p_D 113 DVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 151 (566)
T ss_dssp ---------------------------------------
T ss_pred ccccceeccccccCCCCCCCCCcccCCCCcccccCCCCc
Confidence 345689999999765544455411 11125888888754
No 189
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=59.75 E-value=6.2 Score=26.37 Aligned_cols=13 Identities=15% Similarity=0.787 Sum_probs=8.3
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 66 ~~~C~~C~~~f~~ 78 (119)
T 2jp9_A 66 PFQCKTCQRKFSR 78 (119)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCccCchhCC
Confidence 4677777766654
No 190
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=59.37 E-value=5.1 Score=28.27 Aligned_cols=20 Identities=20% Similarity=0.650 Sum_probs=14.1
Q ss_pred eecCCCCeEEcCCCCeeecC
Q 040420 71 MRVASKQAYICRDCGYIYNE 90 (169)
Q Consensus 71 ~k~~~~~~y~C~~CGyVYd~ 90 (169)
+.+......+|..||.+|.-
T Consensus 49 ~~l~~g~~~RC~eCG~~fkL 68 (80)
T 2odx_A 49 LKPTVNEVARCWECGSVYKL 68 (80)
T ss_dssp ECCCTTCEEECSSSCCEEEE
T ss_pred EEecCCCCeECCCCCeEEEE
Confidence 33445567899999988864
No 191
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.12 E-value=5.8 Score=26.50 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=21.8
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
....|.|..|- |.+. .++-.|..|+.+|-
T Consensus 28 ~~GsWeC~~C~-V~N~-------a~~~kC~ACetpKP 56 (57)
T 2ebv_A 28 PIGSWECSVCC-VSNN-------AEDNKCVSCMSEKP 56 (57)
T ss_dssp CSSSCCCSSSC-CCCC-------SSCSBCSSSCCBCC
T ss_pred CCCeeeCCeeE-ccCc-------cCCceeeEcCCcCC
Confidence 45679999996 5544 35569999999873
No 192
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.20 E-value=11 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.937 Sum_probs=19.4
Q ss_pred eEEcCCCCeeecC---CCCCCCCCC--CCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPD--NYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd--~~~CPvCga 108 (169)
.-.|..|...|.. +-|..++|+ +|.||.|..
T Consensus 33 ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 33 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp EEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred EEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 3455555544433 235667774 799999975
No 193
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=58.06 E-value=5.6 Score=21.69 Aligned_cols=14 Identities=21% Similarity=0.669 Sum_probs=10.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 5 k~~~C~~C~k~f~~ 18 (39)
T 1njq_A 5 RSYTCSFCKREFRS 18 (39)
T ss_dssp SSEECTTTCCEESS
T ss_pred CceECCCCCcccCC
Confidence 35889999877754
No 194
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=57.56 E-value=8 Score=29.09 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=21.9
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
..+.|+.||.+|.... ...+..-.|..|+.
T Consensus 126 ~R~~~~~~g~~y~~~~--~pp~~~~~~~~~~~ 155 (216)
T 3dl0_A 126 GRRICSVCGTTYHLVF--NPPKTPGICDKDGG 155 (216)
T ss_dssp TEEEETTTCCEEETTT--BCCSSTTBCTTTCC
T ss_pred CCCcCCccCCcccccc--CCCcccCccccccc
Confidence 4789999999998753 22233458999986
No 195
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=62.06 E-value=2.2 Score=21.52 Aligned_cols=13 Identities=23% Similarity=0.690 Sum_probs=9.5
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 2 ~~~C~~C~k~f~~ 14 (29)
T 2lvt_A 2 PCQCVMCGKAFTQ 14 (29)
Confidence 3788888877654
No 196
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=57.14 E-value=8.1 Score=27.26 Aligned_cols=29 Identities=21% Similarity=0.445 Sum_probs=21.1
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
....|.|..|.+.=. .+...|-.|+.+|-
T Consensus 62 ~~g~W~C~~C~~~N~--------a~~~~C~~C~~pkp 90 (92)
T 3gj8_B 62 PEGSWDCEVCLVQNK--------ADSTKCIACESAKP 90 (92)
T ss_dssp --CCEECTTTCCEEC--------SSCSBCTTTCCBCC
T ss_pred CCCcccCCcCCcCCh--------hhcccccccCCCCC
Confidence 346799999996643 34559999999874
No 197
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=56.81 E-value=6.1 Score=21.66 Aligned_cols=14 Identities=29% Similarity=1.042 Sum_probs=11.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 10 ~~~~C~~C~k~f~~ 23 (42)
T 2epc_A 10 TPYLCGQCGKSFTQ 23 (42)
T ss_dssp CCEECSSSCCEESS
T ss_pred CCeECCCCCcccCC
Confidence 45999999988764
No 198
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=56.38 E-value=2.9 Score=21.03 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=7.8
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|.|..||..|.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 67888876654
No 199
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.31 E-value=4.2 Score=28.76 Aligned_cols=31 Identities=26% Similarity=0.673 Sum_probs=19.2
Q ss_pred eEEcCCCCeeecC---CCCCCCCCC-CCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPD-NYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd-~~~CPvCga 108 (169)
.-.|..|...|.. .-|..++|+ +|.||.|..
T Consensus 31 ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 31 LLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred EEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 3455555544433 235566774 799999965
No 200
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=55.65 E-value=11 Score=24.40 Aligned_cols=30 Identities=23% Similarity=0.713 Sum_probs=19.4
Q ss_pred CeEEcC--CCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 77 QAYICR--DCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~--~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
..|+|. .||..|... +--+ ...|.|++|+.
T Consensus 44 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~ 83 (100)
T 2ebt_A 44 KPYKCTWEGCDWRFARSDELTRHYRKHTG--AKPFQCGVCNR 83 (100)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHHHHTS--CCSCBCSSSCC
T ss_pred CCeeCCCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCcC
Confidence 459996 699888651 0001 23479999986
No 201
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.60 E-value=6.4 Score=21.63 Aligned_cols=14 Identities=29% Similarity=0.892 Sum_probs=11.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2en2_A 10 KPYKCETCGARFVQ 23 (42)
T ss_dssp CSEECTTTCCEESS
T ss_pred CCEeCCCcChhhCC
Confidence 45999999988764
No 202
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=55.36 E-value=7.5 Score=38.34 Aligned_cols=30 Identities=27% Similarity=0.662 Sum_probs=21.9
Q ss_pred CeEEcCCCCeeecCCC----CCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERK----PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~t----pF~~lPd~~~CPvCga 108 (169)
..|.|+.||+.|.+-. .|...-. .||.|..
T Consensus 266 ~~~~cp~~g~~~~~~~p~~FSfN~p~G--aCp~C~G 299 (972)
T 2r6f_A 266 EKHACPYCGFSIGELEPRLFSFNSPFG--ACPDCDG 299 (972)
T ss_dssp SSEECTTTCCEEECCCGGGGCSSSTTT--BCTTTTS
T ss_pred ccccCCCCCCcCCCCChhhcCcCCCCC--CCCCCcC
Confidence 4589999999988743 4555323 8999975
No 203
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.32 E-value=5.1 Score=25.95 Aligned_cols=14 Identities=7% Similarity=0.254 Sum_probs=10.9
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|.|..||..|..
T Consensus 24 ~~~~C~~C~k~f~~ 37 (95)
T 2ej4_A 24 LSRPKKSCDRTFST 37 (95)
T ss_dssp SSSSCCCCCCCCSS
T ss_pred CCCcccccccccCC
Confidence 35779999988765
No 204
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.15 E-value=6.3 Score=22.16 Aligned_cols=15 Identities=27% Similarity=0.795 Sum_probs=11.6
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (44)
T 2epv_A 10 EKPYECNECGKAFIW 24 (44)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCCcccCc
Confidence 345999999988764
No 205
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=55.12 E-value=6.5 Score=22.99 Aligned_cols=14 Identities=36% Similarity=0.935 Sum_probs=10.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 6 kp~~C~~C~k~F~~ 19 (48)
T 3iuf_A 6 KPYACDICGKRYKN 19 (48)
T ss_dssp SCEECTTTCCEESS
T ss_pred cCEECCCcCcccCC
Confidence 35888888877753
No 206
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.08 E-value=4.1 Score=27.10 Aligned_cols=18 Identities=33% Similarity=0.872 Sum_probs=13.8
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
.|.+|+. +..|.||.|+.
T Consensus 14 ~C~vC~~-----------~~kY~CPrC~~ 31 (56)
T 2yqq_A 14 VCVICLE-----------KPKYRCPACRV 31 (56)
T ss_dssp CCTTTCS-----------CCSEECTTTCC
T ss_pred ccCcCcC-----------CCeeeCCCCCC
Confidence 5889983 35689999986
No 207
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.84 E-value=21 Score=24.47 Aligned_cols=31 Identities=29% Similarity=1.045 Sum_probs=19.2
Q ss_pred eEEcCCCCeeecC---CCCCCCCCC--CCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPD--NYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd--~~~CPvCga 108 (169)
.-.|..|...|.. .-|..++|+ +|.||.|..
T Consensus 41 ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 41 QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp EEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred EEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3445555544433 235677786 699999964
No 208
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=54.75 E-value=8.1 Score=28.05 Aligned_cols=37 Identities=30% Similarity=0.681 Sum_probs=23.5
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeeeCC
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~~~ 117 (169)
+.+--|+|. |++--. .++.+|.. .|+.||..+ |++..
T Consensus 44 a~KRFFkC~-C~~Rt~---sl~r~P~~-~C~~Cg~~~--wer~~ 80 (92)
T 2kwq_A 44 GVKRFFKCP-CGNRTI---SLDRLPKK-HCSTCGLFK--WERVG 80 (92)
T ss_dssp EECEEEECT-TSCEEE---ESSSSCCS-CCTTTCSCC--CEEEC
T ss_pred eeEEEEECC-CCCcee---EeeeCCCC-CCCCCCCCc--eEEee
Confidence 344457775 775442 33456653 899999986 77654
No 209
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=54.61 E-value=8.8 Score=24.27 Aligned_cols=32 Identities=19% Similarity=0.652 Sum_probs=19.0
Q ss_pred CeEEcC--CCCeeecCCCCC------CCCCCCCCCCCCCC
Q 040420 77 QAYICR--DCGYIYNERKPF------DQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~--~CGyVYd~~tpF------~~lPd~~~CPvCga 108 (169)
..|+|. .||..|.....+ -.-...|.|+.|+.
T Consensus 34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~ 73 (89)
T 2wbs_A 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDR 73 (89)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSC
T ss_pred CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCc
Confidence 459997 699888651000 00023478999985
No 210
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=54.27 E-value=13 Score=26.48 Aligned_cols=31 Identities=16% Similarity=0.779 Sum_probs=20.0
Q ss_pred eEEcCCCCeeecCC---CCCCCCC-CCCCCCCCCC
Q 040420 78 AYICRDCGYIYNER---KPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~---tpF~~lP-d~~~CPvCga 108 (169)
.-.|..|...|-.. -|..++| .+|.||.|..
T Consensus 37 LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~ 71 (88)
T 1fp0_A 37 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV 71 (88)
T ss_dssp CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred EEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence 45566666665442 2555666 5799999975
No 211
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.09 E-value=7 Score=21.44 Aligned_cols=15 Identities=27% Similarity=1.004 Sum_probs=11.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (41)
T 2ept_A 8 QRVYECQECGKSFRQ 22 (41)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCCCCCCcCC
Confidence 346999999988764
No 212
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=54.03 E-value=8.8 Score=23.04 Aligned_cols=29 Identities=17% Similarity=0.451 Sum_probs=16.8
Q ss_pred EEcCCCCeeecCC--CCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNER--KPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 79 y~C~~CGyVYd~~--tpF~~lPd~~~CPvCgap 109 (169)
.+...||++|-.. ..|-+ ....||+|+.+
T Consensus 22 ~~~~~C~H~f~~~Ci~~w~~--~~~~CP~Cr~~ 52 (55)
T 1iym_A 22 RFLPRCGHGFHAECVDMWLG--SHSTCPLCRLT 52 (55)
T ss_dssp EECSSSCCEECTTHHHHTTT--TCCSCSSSCCC
T ss_pred EECCCCCCcccHHHHHHHHH--cCCcCcCCCCE
Confidence 3444688887763 12222 23489999864
No 213
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=53.99 E-value=6.9 Score=23.14 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=11.7
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 22 ~k~~~C~~C~k~f~~ 36 (54)
T 1yui_A 22 EQPATCPICYAVIRQ 36 (54)
T ss_dssp SCCEECTTTCCEESS
T ss_pred CCCccCCCCCcccCC
Confidence 345999999988754
No 214
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.88 E-value=7.1 Score=21.89 Aligned_cols=15 Identities=27% Similarity=0.972 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eow_A 10 EKPYKCNECGKAFRA 24 (46)
T ss_dssp CCCEECTTSCCEESS
T ss_pred CCCeeccccCChhcC
Confidence 346999999988875
No 215
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.80 E-value=7 Score=21.78 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=11.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2emb_A 11 KRYECSKCQATFNL 24 (44)
T ss_dssp SSEECTTTCCEESC
T ss_pred CCeECCCCCCccCC
Confidence 45999999988865
No 216
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=53.71 E-value=9.6 Score=26.91 Aligned_cols=13 Identities=8% Similarity=0.314 Sum_probs=7.1
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|.|..||..|..
T Consensus 25 ~~~C~~C~~~f~~ 37 (155)
T 2rpc_A 25 SRPKKSCDRTFST 37 (155)
T ss_dssp SSSCCCCCCCBSS
T ss_pred ccccccCCcccCC
Confidence 4556666655543
No 217
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.70 E-value=7.1 Score=21.60 Aligned_cols=15 Identities=27% Similarity=0.866 Sum_probs=11.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (44)
T 2eof_A 10 EKPYECNECQKAFNT 24 (44)
T ss_dssp CCSEECTTTCCEESC
T ss_pred CCCeECCCCCcccCC
Confidence 345999999988865
No 218
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=58.68 E-value=2.8 Score=21.03 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=9.8
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
.|+|..||..|..
T Consensus 3 ~~~C~~C~k~f~~ 15 (30)
T 2lvr_A 3 PYVCIHCQRQFAD 15 (30)
Confidence 4889999877754
No 219
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.19 E-value=7.2 Score=21.73 Aligned_cols=15 Identities=27% Similarity=0.964 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~F~~ 24 (44)
T 2eox_A 10 SKSYNCNECGKAFTR 24 (44)
T ss_dssp CCCEEETTTTEEESS
T ss_pred CCCeECcccCcccCC
Confidence 346999999988865
No 220
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.15 E-value=7.4 Score=21.90 Aligned_cols=15 Identities=27% Similarity=0.893 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~F~~ 24 (46)
T 2emi_A 10 ERHYECSECGKAFIQ 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCCCCCCCCcccCC
Confidence 346999999988875
No 221
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=53.01 E-value=5.7 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.676 Sum_probs=19.2
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCee
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
.+.|..|+-.|... . .||.||.+-....
T Consensus 18 ~~~C~~C~~~~~~~--------a-fCPeCgq~Le~lk 45 (81)
T 2jrp_A 18 TAHCETCAKDFSLQ--------A-LCPDCRQPLQVLK 45 (81)
T ss_dssp EEECTTTCCEEEEE--------E-ECSSSCSCCCEEE
T ss_pred ceECccccccCCCc--------c-cCcchhhHHHHHH
Confidence 67899999877642 1 6777777665543
No 222
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.99 E-value=7.2 Score=22.03 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eoz_A 10 EKPYSCNVCGKAFVL 24 (46)
T ss_dssp CCSEEETTTTEEESS
T ss_pred CCCeECcccChhhCC
Confidence 346999999988876
No 223
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.89 E-value=7.4 Score=21.69 Aligned_cols=14 Identities=14% Similarity=0.857 Sum_probs=11.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2yu5_A 11 NPFKCSKCDRVFTQ 24 (44)
T ss_dssp CSEECSSSSCEESS
T ss_pred CCeECCCCCchhCC
Confidence 45999999988865
No 224
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=52.53 E-value=8 Score=26.19 Aligned_cols=14 Identities=29% Similarity=0.899 Sum_probs=11.2
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 33 ~~~~C~~C~~~f~~ 46 (124)
T 1ubd_C 33 RVHVCAECGKAFVE 46 (124)
T ss_dssp CCEECTTTCCEESS
T ss_pred CCeECCCCCchhCC
Confidence 46899999988865
No 225
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...
Probab=52.46 E-value=6.4 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=9.9
Q ss_pred CCCeEEcCCCCeeec
Q 040420 75 SKQAYICRDCGYIYN 89 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd 89 (169)
....++|..||.+|.
T Consensus 76 ~g~~~RC~eCG~~fk 90 (98)
T 1v54_F 76 KGEAQRCPSCGTHYK 90 (98)
T ss_dssp SSSCEECTTTCCEEE
T ss_pred CCCceECCCCCeEEE
Confidence 334677888887664
No 226
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.46 E-value=7.5 Score=21.95 Aligned_cols=15 Identities=27% Similarity=0.919 Sum_probs=12.2
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2ytp_A 10 ERHYECSECGKAFAR 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCcCCcccCC
Confidence 346999999988875
No 227
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=52.27 E-value=16 Score=26.30 Aligned_cols=16 Identities=25% Similarity=1.043 Sum_probs=12.0
Q ss_pred CCCCCCC-CCCCCCCCC
Q 040420 93 PFDQLPD-NYFCPVCGA 108 (169)
Q Consensus 93 pF~~lPd-~~~CPvCga 108 (169)
|..++|+ +|.||.|..
T Consensus 95 ~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 95 PLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCSSCCSSCCCCTTTSC
T ss_pred CCCCCCCCCeECCCCCC
Confidence 5667765 599999963
No 228
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=52.25 E-value=12 Score=29.33 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=22.3
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
....|..||.+|... |...+....|.+||.+
T Consensus 155 ~R~~~~~~g~~y~~~--~~pp~~~~~~~~~~~~ 185 (243)
T 3tlx_A 155 GRLIHKPSGRIYHKI--FNPPKVPFRDDVTNEP 185 (243)
T ss_dssp TEEEETTTTEEEETT--TBCCSSTTBCTTTCCB
T ss_pred cCCCCcccCcccccc--cCCCcccCcccccccc
Confidence 367999999999864 3332344599999863
No 229
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.25 E-value=7.4 Score=21.86 Aligned_cols=15 Identities=20% Similarity=0.822 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (45)
T 2epu_A 10 QKPFECTHCGKSFRA 24 (45)
T ss_dssp CCSEEETTTTEEESS
T ss_pred CcCccCCCCCCccCC
Confidence 346999999988876
No 230
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.22 E-value=7.7 Score=21.90 Aligned_cols=15 Identities=13% Similarity=0.656 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|.|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eoy_A 10 EKCFKCNKCEKTFSC 24 (46)
T ss_dssp SCCEECSSSCCEESS
T ss_pred CCCEECcCCCCcCCC
Confidence 346999999988865
No 231
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.75 E-value=7 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.646 Sum_probs=19.0
Q ss_pred eEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCga 108 (169)
.-.|..|+..|-. .-|..++| ++|.||.|..
T Consensus 69 ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 69 MLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp EEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred eeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 4555555555443 23556666 4799999955
No 232
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.72 E-value=7.8 Score=21.72 Aligned_cols=15 Identities=33% Similarity=1.054 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yts_A 10 EKPYICNECGKSFIQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCEECCCCChhhCC
Confidence 346999999988876
No 233
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=51.69 E-value=7.7 Score=21.89 Aligned_cols=15 Identities=20% Similarity=0.811 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2emj_A 10 EKPFECAECGKSFSI 24 (46)
T ss_dssp CCSEECSSSSCEESS
T ss_pred CCCEECCCCCcccCC
Confidence 345999999988875
No 234
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.68 E-value=7.9 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.793 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~F~~ 24 (46)
T 2em3_A 10 EKPYECKVCSKAFTQ 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CcCeECCCCCcccCC
Confidence 346999999988876
No 235
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=51.61 E-value=8.3 Score=30.26 Aligned_cols=10 Identities=40% Similarity=0.703 Sum_probs=7.8
Q ss_pred CCCCCCCCcc
Q 040420 102 FCPVCGAPKR 111 (169)
Q Consensus 102 ~CPvCgapK~ 111 (169)
.||+|+.+-.
T Consensus 245 ~cP~~~~~~~ 254 (281)
T 2c2l_A 245 FNPVTRSPLT 254 (281)
T ss_dssp SCTTTCCCCC
T ss_pred CCcCCCCCCc
Confidence 5999998653
No 236
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.56 E-value=7.9 Score=21.68 Aligned_cols=15 Identities=27% Similarity=0.961 Sum_probs=12.2
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2yrj_A 10 EKPYRCGECGKAFAQ 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCeECCCCCCccCC
Confidence 346999999988876
No 237
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=51.49 E-value=9.2 Score=30.87 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=13.3
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
..+|..||.+|+-...... .+-..||.||.
T Consensus 113 ~~~C~~C~~~~~~~~~~~~-~~~p~c~~Cgg 142 (235)
T 1s5p_A 113 KVRCSQSGQVLDWTGDVTP-EDKCHCCQFPA 142 (235)
T ss_dssp EEEETTTCCEEECCSCCCS-SCCC-------
T ss_pred EEEeCCCCCcccchhhccC-CCCCCCCCCCC
Confidence 6689999999875421111 01124777875
No 238
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=51.39 E-value=8.1 Score=21.18 Aligned_cols=15 Identities=33% Similarity=1.017 Sum_probs=11.7
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (42)
T 2el5_A 8 ENPYECSECGKAFNR 22 (42)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCccCCCcChhhCC
Confidence 345999999988765
No 239
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.26 E-value=8.2 Score=21.79 Aligned_cols=15 Identities=33% Similarity=1.019 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2yto_A 10 EKPYKCSDCGKAFTR 24 (46)
T ss_dssp CCCEECSSSCCEESS
T ss_pred CCCEECcccCCccCC
Confidence 346999999988865
No 240
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=51.25 E-value=3.3 Score=35.19 Aligned_cols=29 Identities=28% Similarity=0.776 Sum_probs=19.1
Q ss_pred CeE-EcCCCCee-ecCCCCCCCC-CCCCCCCCCCCCc
Q 040420 77 QAY-ICRDCGYI-YNERKPFDQL-PDNYFCPVCGAPK 110 (169)
Q Consensus 77 ~~y-~C~~CGyV-Yd~~tpF~~l-Pd~~~CPvCgapK 110 (169)
..| +|..|+.+ |.. +| +..++||.|++..
T Consensus 22 ~l~~kc~~~~~~~~~~-----~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 22 GVWTKCDSCGQVLYRA-----ELERNLEVCPKCDHHM 53 (304)
T ss_dssp -CEECCTTTCCCEETT-----HHHHTTTBCTTTCCBC
T ss_pred HHHHhhhhccchhhHH-----HHHHHhCCCCCCCCCC
Confidence 345 89999955 543 12 2236999999875
No 241
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.12 E-value=8.2 Score=21.62 Aligned_cols=15 Identities=27% Similarity=0.899 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~~~~~C~~C~k~f~~ 24 (46)
T 2eor_A 10 EKPYNCEECGKAFIH 24 (46)
T ss_dssp CCSEECTTTCCEESS
T ss_pred CcCccCCCCCCCcCC
Confidence 346999999988875
No 242
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.05 E-value=8.1 Score=21.79 Aligned_cols=15 Identities=27% Similarity=0.915 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em4_A 10 QRPYECIECGKAFKT 24 (46)
T ss_dssp SSSEECSSSCCEESS
T ss_pred CcCcCCCCCCCccCC
Confidence 346999999988875
No 243
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=51.01 E-value=4 Score=28.97 Aligned_cols=10 Identities=50% Similarity=1.129 Sum_probs=8.0
Q ss_pred CCCCCCCCcc
Q 040420 102 FCPVCGAPKR 111 (169)
Q Consensus 102 ~CPvCgapK~ 111 (169)
.||+||.+-.
T Consensus 49 ~CPvCgs~l~ 58 (112)
T 1l8d_A 49 KCPVCGRELT 58 (112)
T ss_dssp ECTTTCCEEC
T ss_pred CCCCCCCcCC
Confidence 7999998544
No 244
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=50.93 E-value=10 Score=24.64 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=19.4
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCga 108 (169)
..-.|..|...|.. ..|..++| .+|.||.|..
T Consensus 22 ~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 22 EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 34456666655543 22344555 5799999964
No 245
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=50.85 E-value=4.9 Score=28.74 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEcCCCCeeecCC--------CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNER--------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~--------tpF~~lPd~~~CPvCga 108 (169)
..+|..|...|..+ ..-+++|+.|.||.|..
T Consensus 75 m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 75 LMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp CEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 45789888766552 23356788899999964
No 246
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.77 E-value=8.1 Score=21.64 Aligned_cols=15 Identities=20% Similarity=0.795 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ytf_A 10 EKPFECSECQKAFNT 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCcCCCCCCcccCC
Confidence 346999999988875
No 247
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.25 E-value=6.8 Score=24.94 Aligned_cols=31 Identities=29% Similarity=0.911 Sum_probs=19.7
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCC
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCG 107 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCg 107 (169)
..-.|..|...|-. .-|..++| .+|.||.|.
T Consensus 20 ~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 20 QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34567777766654 22455566 579999984
No 248
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.76 E-value=6.6 Score=21.82 Aligned_cols=14 Identities=29% Similarity=1.037 Sum_probs=11.4
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2eoj_A 11 NPYECCECGKVFSR 24 (44)
T ss_dssp CSCEETTTTEECSS
T ss_pred cCeeCCCCCCccCC
Confidence 45999999988765
No 249
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.68 E-value=13 Score=27.84 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=21.9
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
..+.|+.||.+|.... ...+..-.|..|+.
T Consensus 126 ~R~~~~~~g~~y~~~~--~pp~~~~~~~~~~~ 155 (216)
T 3fb4_A 126 GRWICKTCGATYHTIF--NPPAVEGICDKDGG 155 (216)
T ss_dssp SEEEETTTCCEEETTT--BCCSSTTBCTTTCC
T ss_pred cCCCCCccCCcccccc--CCCCcccccccccC
Confidence 3689999999998753 22234459999986
No 250
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.62 E-value=8.6 Score=21.59 Aligned_cols=15 Identities=20% Similarity=0.886 Sum_probs=11.8
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2en3_A 10 EKPFQCKECGMNFSW 24 (46)
T ss_dssp CCSEECSSSCCEESS
T ss_pred CCCeeCcccChhhCC
Confidence 345999999988865
No 251
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=49.58 E-value=9.2 Score=27.00 Aligned_cols=8 Identities=0% Similarity=-0.255 Sum_probs=4.8
Q ss_pred eEEcCCCC
Q 040420 78 AYICRDCG 85 (169)
Q Consensus 78 ~y~C~~CG 85 (169)
.|.|.+|+
T Consensus 29 ~~~CpI~~ 36 (100)
T 2kre_A 29 EFRDPLMD 36 (100)
T ss_dssp TTBCTTTC
T ss_pred hhCCcCcc
Confidence 45666664
No 252
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=49.47 E-value=21 Score=22.77 Aligned_cols=11 Identities=45% Similarity=1.035 Sum_probs=8.6
Q ss_pred CCCCCCCCCCc
Q 040420 100 NYFCPVCGAPK 110 (169)
Q Consensus 100 ~~~CPvCgapK 110 (169)
...||+|+.+-
T Consensus 53 ~~~CP~Cr~~~ 63 (79)
T 2egp_A 53 KSSCPVCGISY 63 (79)
T ss_dssp CCCCSSSCCCC
T ss_pred CCcCCCCCCcC
Confidence 45899999864
No 253
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.37 E-value=6 Score=21.84 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2eos_A 10 KPYPCEICGTRFRH 23 (42)
T ss_dssp CCBCCSSSCCCBSS
T ss_pred CCEECCCCCCccCC
Confidence 45888888877654
No 254
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=49.30 E-value=4 Score=34.77 Aligned_cols=25 Identities=24% Similarity=0.881 Sum_probs=16.1
Q ss_pred EcCCCCeee----cCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIY----NERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVY----d~~tpF~~lPd~~~CPvCga 108 (169)
=|+.||... .-.+| -.|+.||.|+.
T Consensus 36 yCPnCG~~~l~~f~nN~P----VaDF~C~~C~E 64 (257)
T 4esj_A 36 YCPNCGNNPLNHFENNRP----VADFYCNHCSE 64 (257)
T ss_dssp CCTTTCCSSCEEC----C----CCEEECTTTCC
T ss_pred cCCCCCChhhhhccCCCc----ccccccCCcch
Confidence 599999643 22333 35689999976
No 255
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=48.97 E-value=3.2 Score=35.89 Aligned_cols=29 Identities=21% Similarity=0.534 Sum_probs=19.0
Q ss_pred eEEcCCCCeeecCCCCCC----CCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFD----QLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~----~lPd~~~CPvCga 108 (169)
..+|..||+.|+...-++ ..+. .||.|+.
T Consensus 161 ~~~C~~C~~~~~~~~~~~~~~~~~~P--~Cp~C~~ 193 (354)
T 2hjh_A 161 TATCVTCHWNLPGERIFNKIRNLELP--LCPYCYK 193 (354)
T ss_dssp EEEETTTCCEEEGGGGHHHHHTTCCC--BCTTTHH
T ss_pred ccccCCCCCcCCHHHHHHHhhccCCC--cCccccc
Confidence 679999999987532111 1123 7999974
No 256
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.72 E-value=6 Score=21.68 Aligned_cols=14 Identities=29% Similarity=1.004 Sum_probs=10.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 10 k~~~C~~C~k~f~~ 23 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQ 23 (42)
T ss_dssp CSBCCTTTTCCBSS
T ss_pred CCeeCCCccchhCC
Confidence 35888888877654
No 257
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=48.17 E-value=16 Score=22.33 Aligned_cols=17 Identities=18% Similarity=0.430 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040420 149 IAIAVAAVALAGLYFYL 165 (169)
Q Consensus 149 i~~~~G~~al~~l~fyl 165 (169)
++.++|++.++++.||+
T Consensus 18 vG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFR 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555666666666555
No 258
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=47.88 E-value=4.1 Score=25.68 Aligned_cols=31 Identities=16% Similarity=0.506 Sum_probs=19.7
Q ss_pred eEEcCCCCeeecC---CCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd~~~CPvCga 108 (169)
--+|..|..=|-. +..-+++|+.|.||.|..
T Consensus 18 MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 18 MIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp EEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 3478888744443 222235689999999964
No 259
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=47.79 E-value=4.4 Score=21.59 Aligned_cols=11 Identities=18% Similarity=0.785 Sum_probs=7.6
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..+.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 67777776654
No 260
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.39 E-value=6.5 Score=21.52 Aligned_cols=14 Identities=21% Similarity=0.885 Sum_probs=9.9
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 9 k~~~C~~C~k~f~~ 22 (42)
T 2yte_A 9 KPYSCAECKETFSD 22 (42)
T ss_dssp CSCBCTTTCCBCSS
T ss_pred CCeECCCCCCccCC
Confidence 35888888877654
No 261
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=47.38 E-value=11 Score=34.36 Aligned_cols=39 Identities=28% Similarity=0.561 Sum_probs=22.8
Q ss_pred CCCeEEcCC--CCeeecCCC--CC-CCCCCCCCCCCCCCCccCee
Q 040420 75 SKQAYICRD--CGYIYNERK--PF-DQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 75 ~~~~y~C~~--CGyVYd~~t--pF-~~lPd~~~CPvCgapK~~F~ 114 (169)
....|+|.. ||++..-.. .. ........||.|+.. ..|.
T Consensus 132 ~~~~~~C~~~~C~~~~~~~~~~~~~~~~~~p~~C~~C~~~-~~~~ 175 (595)
T 3f9v_A 132 YKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP-GQFR 175 (595)
T ss_dssp EECCCEEESSSCCCBCCSSCSSCCCSSCCCCSSCTTTCCC-SEEE
T ss_pred EEEEEEecCCCCCCEEEEEeccccCCcccCCCcCCCCCCC-CceE
Confidence 345799999 997654221 11 122233499999974 2444
No 262
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.36 E-value=6.5 Score=22.16 Aligned_cols=15 Identities=27% Similarity=1.119 Sum_probs=11.8
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2emg_A 10 ENPFICSECGKVFTH 24 (46)
T ss_dssp CCSCBCTTTCCBCSS
T ss_pred CCCEECCccCcccCC
Confidence 345999999988765
No 263
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=47.32 E-value=11 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.685 Sum_probs=7.4
Q ss_pred eEEcCC--CCeeecC
Q 040420 78 AYICRD--CGYIYNE 90 (169)
Q Consensus 78 ~y~C~~--CGyVYd~ 90 (169)
.|+|.. ||..|..
T Consensus 31 ~~~C~~~~C~~~f~~ 45 (85)
T 2j7j_A 31 PYECPHEGCDKRFSL 45 (85)
T ss_dssp CEECCSTTCCCEESS
T ss_pred CeeCCCCCCcCccCC
Confidence 366655 6665544
No 264
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=47.03 E-value=11 Score=26.86 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=18.5
Q ss_pred CCCCeEEcCCCCeeecCCCCCC--CCCCCCCCCCCCC
Q 040420 74 ASKQAYICRDCGYIYNERKPFD--QLPDNYFCPVCGA 108 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~--~lPd~~~CPvCga 108 (169)
.-...|.|+.||+.=.-..-++ .--..-.|-+||.
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~ 55 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLE 55 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCC
T ss_pred CCCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCC
Confidence 3445688888886511110111 1123357888887
No 265
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=46.75 E-value=7.5 Score=24.88 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=7.9
Q ss_pred CeEEcCCCCeeec
Q 040420 77 QAYICRDCGYIYN 89 (169)
Q Consensus 77 ~~y~C~~CGyVYd 89 (169)
..|+|..||+.+.
T Consensus 42 ~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 42 IFYKCTKCGHTWR 54 (57)
T ss_dssp EEEEESSSCCEEE
T ss_pred EEEEcCCCCCEec
Confidence 3566766766654
No 266
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=46.66 E-value=9.7 Score=37.08 Aligned_cols=30 Identities=30% Similarity=0.731 Sum_probs=21.6
Q ss_pred CeEEcCCCCeeecCCC----CCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERK----PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~t----pF~~lPd~~~CPvCga 108 (169)
..|.|+.||+.|.+-. .|.. |. -.||.|..
T Consensus 248 ~~~~c~~~~~~~~~~~~~~fsfn~-p~-g~C~~C~G 281 (916)
T 3pih_A 248 ENLMCPVCGIGFPEITPKLFSFNS-PY-GACPNCHG 281 (916)
T ss_dssp SSCBCTTTCCCCCCCSGGGGCTTS-TT-TBCTTTTT
T ss_pred ccccCcccCCccCCCCHhhcCCCC-CC-CcCCeeec
Confidence 4689999999987743 4545 32 38999965
No 267
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=46.37 E-value=6 Score=22.94 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=7.8
Q ss_pred CCCCCCCCCC
Q 040420 99 DNYFCPVCGA 108 (169)
Q Consensus 99 d~~~CPvCga 108 (169)
..+.||+|++
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 3578999987
No 268
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=46.17 E-value=19 Score=25.34 Aligned_cols=27 Identities=22% Similarity=0.544 Sum_probs=20.5
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
+.+|-.|-.+..+. ....||.||...-
T Consensus 15 iLrC~aCf~~t~~~-------~k~FCp~CGn~TL 41 (79)
T 2con_A 15 ILRCHGCFKTTSDM-------NRVFCGHCGNKTL 41 (79)
T ss_dssp EEECSSSCCEESCS-------SCCSCSSSCCSCC
T ss_pred eeEecccceECCCc-------ccccccccCcccc
Confidence 56999999998653 2239999999643
No 269
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=46.17 E-value=10 Score=33.17 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=18.1
Q ss_pred eEEcCCCCeeec-CCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYN-ERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd-~~tpF~~lPd~~~CPvCga 108 (169)
.|.|..||+... .+. ..++. .||.||.
T Consensus 244 v~~C~~C~~~~~~~~~--~~~~~--~C~~cg~ 271 (392)
T 3axs_A 244 IQYCFNCMNREVVTDL--YKFKE--KCPHCGS 271 (392)
T ss_dssp EEECTTTCCEEEECCG--GGCCS--BCTTTCS
T ss_pred EEECCCCCCeEeecCC--CCCCC--cCCCCCC
Confidence 789999996543 221 12344 8999986
No 270
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=46.08 E-value=8.5 Score=31.91 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=10.5
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
..+|..||+.|+
T Consensus 134 ~~~C~~C~~~~~ 145 (273)
T 3riy_A 134 KTRCTSCGVVAE 145 (273)
T ss_dssp EEEETTTCCEEE
T ss_pred eeEcCCCCCccc
Confidence 569999999985
No 271
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=46.04 E-value=7.3 Score=25.06 Aligned_cols=32 Identities=28% Similarity=0.880 Sum_probs=20.7
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCga 108 (169)
..-.|..|...|-. +-|..++| .+|.||.|..
T Consensus 16 ~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 16 QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 34567778766654 23445565 5799999943
No 272
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=45.84 E-value=13 Score=26.32 Aligned_cols=35 Identities=23% Similarity=0.554 Sum_probs=19.4
Q ss_pred CCCCeEEcCCCCeeecCCCCC----CCCCCCCCCCCCCCCcc
Q 040420 74 ASKQAYICRDCGYIYNERKPF----DQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF----~~lPd~~~CPvCgapK~ 111 (169)
+....|+|.+|.+.=.-..-| ..+| .|-.||....
T Consensus 13 ~~~~tWVCpICsfsN~v~s~fdp~~~~lP---pC~aCGIkP~ 51 (76)
T 2j9u_B 13 DVVSTWVCPICMVSNETQGEFTKDTLPTP---ICINCGVPAD 51 (76)
T ss_dssp --CEEEECTTTCCEEEESSCCCTTCSSCC---BCTTTCCBCC
T ss_pred ccccceECccccccCcCccccCCCCCCCC---cccccCccCC
Confidence 344589999999432211112 2333 5888988544
No 273
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.76 E-value=12 Score=23.92 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCccCeeeCC
Q 040420 99 DNYFCPVCGAPKRRFRPYT 117 (169)
Q Consensus 99 d~~~CPvCgapK~~F~~~~ 117 (169)
++..||.||+.+..|..+-
T Consensus 8 ~~~~Cp~Cg~~~a~f~q~Q 26 (50)
T 1tfi_A 8 DLFTCGKCKKKNCTYTQVQ 26 (50)
T ss_dssp CCSCCSSSCSSCEEEEEEC
T ss_pred CccCCCCCCCCEEEEEEec
Confidence 4568999999888887654
No 274
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=45.74 E-value=2.6 Score=39.82 Aligned_cols=37 Identities=27% Similarity=0.665 Sum_probs=26.9
Q ss_pred CCCeE-EcCCCCeeecCC--CCCCCCCCCCCCCCCCCCccCe
Q 040420 75 SKQAY-ICRDCGYIYNER--KPFDQLPDNYFCPVCGAPKRRF 113 (169)
Q Consensus 75 ~~~~y-~C~~CGyVYd~~--tpF~~lPd~~~CPvCgapK~~F 113 (169)
++..| +|..|-..|+.. -.|...|. .||.||=.-..+
T Consensus 63 sM~~F~mC~~C~~EY~dp~dRRfHAqp~--aCp~CGP~l~~l 102 (657)
T 3ttc_A 63 VMAAFPLCPACDKEYRDPLDRRFHAQPV--ACPECGPYLEWV 102 (657)
T ss_dssp GGGGSCCCHHHHHHHHCTTSTTTTCTTC--CCTTTSCCEEEE
T ss_pred cccCCCCChHHHHHhCCCCCCcCcCCCC--cCcccCccceEe
Confidence 33345 899999998873 47888888 999998644344
No 275
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=45.72 E-value=4.7 Score=37.06 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=19.8
Q ss_pred CCeEEcCCCCeeecCCCCCCCC--CCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFDQL--PDNYFCPVCG 107 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~l--Pd~~~CPvCg 107 (169)
-...+|..||+.|+...-++.+ .+.-.||.|+
T Consensus 297 l~~~~C~~Cg~~~~~e~i~~~i~~~~~P~Cp~Cg 330 (492)
T 4iao_A 297 FATATCVTCHWNLPGERIFNKIRNLELPLCPYCY 330 (492)
T ss_dssp TTEEEETTTCCEEEGGGGHHHHHTTCCCBCTTTH
T ss_pred cceeecCCCCCcCCHHHHHHHHhccCCCCCcccc
Confidence 3467999999999754222100 1112799997
No 276
>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=45.62 E-value=9.3 Score=29.35 Aligned_cols=11 Identities=45% Similarity=0.945 Sum_probs=5.2
Q ss_pred eEEcCCCCeee
Q 040420 78 AYICRDCGYIY 88 (169)
Q Consensus 78 ~y~C~~CGyVY 88 (169)
.++|..||.+|
T Consensus 110 p~RCpeCG~~f 120 (129)
T 2y69_F 110 AQRCPSCGTHY 120 (129)
T ss_dssp CEECTTTCCEE
T ss_pred ceeCCCCCeEE
Confidence 34455555444
No 277
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=45.58 E-value=3.1 Score=22.03 Aligned_cols=11 Identities=18% Similarity=0.694 Sum_probs=7.7
Q ss_pred EEcCCCCeeec
Q 040420 79 YICRDCGYIYN 89 (169)
Q Consensus 79 y~C~~CGyVYd 89 (169)
|+|..||..|.
T Consensus 3 ~~C~~C~k~f~ 13 (32)
T 2kfq_A 3 FACPACPKRFM 13 (32)
T ss_dssp SSSSSSCTTHH
T ss_pred CCCCCCCcccC
Confidence 67888886554
No 278
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=45.42 E-value=4.8 Score=30.37 Aligned_cols=7 Identities=57% Similarity=1.725 Sum_probs=4.0
Q ss_pred CCCCCCC
Q 040420 101 YFCPVCG 107 (169)
Q Consensus 101 ~~CPvCg 107 (169)
+.|+.|+
T Consensus 26 ~~~~~~~ 32 (189)
T 3cng_A 26 YICPKCH 32 (189)
T ss_dssp EEETTTT
T ss_pred eECCCCC
Confidence 4566665
No 279
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.99 E-value=7.4 Score=22.06 Aligned_cols=15 Identities=27% Similarity=0.833 Sum_probs=11.8
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eon_A 10 EKPYKCQVCGKAFRV 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CcccCCCCCCcccCc
Confidence 346999999988765
No 280
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.98 E-value=7.9 Score=21.70 Aligned_cols=15 Identities=27% Similarity=0.891 Sum_probs=12.0
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eq3_A 10 EKPYECNQCGKAFSV 24 (46)
T ss_dssp CCSSEETTTTEECSS
T ss_pred CCCeECCCCChhhCC
Confidence 346999999988865
No 281
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.92 E-value=7.2 Score=21.94 Aligned_cols=15 Identities=27% Similarity=1.101 Sum_probs=11.7
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2enf_A 10 EKPYKCNECGKVFTQ 24 (46)
T ss_dssp CCSCBCSSSCCBCSS
T ss_pred CcCeECCCCCcccCC
Confidence 345999999988765
No 282
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=44.71 E-value=2.8 Score=40.02 Aligned_cols=37 Identities=27% Similarity=0.775 Sum_probs=24.3
Q ss_pred CCCeE-EcCCCCeeecCC--CCCCCCCCCCCCCCCCCCccCee
Q 040420 75 SKQAY-ICRDCGYIYNER--KPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 75 ~~~~y-~C~~CGyVYd~~--tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
++..| +|..|-..|+.. -.|...|. .||.||= +-++.
T Consensus 152 sM~~F~mC~~C~~EY~dp~dRRfhAqp~--aC~~CGP-~l~l~ 191 (772)
T 4g9i_A 152 TMKEFPMCDFCRSEYEDPLNRRYHAEPT--ACPVCGP-SYRLY 191 (772)
T ss_dssp GGGGSCCCHHHHHHHHCSSSTTTTCTTC--CCTTTSC-CEEEE
T ss_pred cCCCCCCChhHHHHhCCCCCCCCcCCCC--CCccCCc-eEEEE
Confidence 33344 677777777552 36888888 9999974 44444
No 283
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.66 E-value=7.6 Score=21.91 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=11.2
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2enh_A 11 KPYECDVCRKAFSH 24 (46)
T ss_dssp SSCBCTTTCCBCSS
T ss_pred CCcCCCCcCchhCC
Confidence 45899999988765
No 284
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=44.52 E-value=26 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.951 Sum_probs=18.4
Q ss_pred eEEcCCCCeeecC---CCCCCCCCC-C-CCCCCCCC
Q 040420 78 AYICRDCGYIYNE---RKPFDQLPD-N-YFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~---~tpF~~lPd-~-~~CPvCga 108 (169)
.-.|..|...|.- .-|..++|+ + |.||.|..
T Consensus 41 ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 41 QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp EEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred eeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3455555544443 235667775 3 99999964
No 285
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.01 E-value=7.3 Score=21.78 Aligned_cols=14 Identities=29% Similarity=0.892 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 ~~~~C~~C~k~f~~ 24 (44)
T 2eou_A 11 TTSECQECGKIFRH 24 (44)
T ss_dssp CCCCCTTTCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 45888888877654
No 286
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.76 E-value=37 Score=18.77 Aligned_cols=15 Identities=20% Similarity=0.997 Sum_probs=12.1
Q ss_pred CCeEEcC--CCCeeecC
Q 040420 76 KQAYICR--DCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~--~CGyVYd~ 90 (169)
...|+|. .||..|..
T Consensus 10 ~k~~~C~~~~C~k~f~~ 26 (48)
T 2ent_A 10 EKPFACTWPGCGWRFSR 26 (48)
T ss_dssp CCCEECCSSSCCCEESS
T ss_pred CCCeECCCCCCCCccCC
Confidence 4469998 89988876
No 287
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.62 E-value=8 Score=21.82 Aligned_cols=15 Identities=27% Similarity=0.848 Sum_probs=11.5
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2em6_A 10 EKCYKCDVCGKEFSQ 24 (46)
T ss_dssp CCCCBCSSSCCBCSS
T ss_pred CCCeECCCCCcccCC
Confidence 345999999988765
No 288
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=43.60 E-value=4.5 Score=26.88 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=20.9
Q ss_pred CeEEcCC--CCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRD--CGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~--CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..-+|+. |.-+-.+-..|+.--..|+||.|+..
T Consensus 8 ~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCE
T ss_pred CCcccCCCCCCeEECCceEEECCCCEEEcccCCCc
Confidence 3457887 88555554344333346999999864
No 289
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=43.46 E-value=3.2 Score=31.59 Aligned_cols=14 Identities=43% Similarity=1.080 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCc
Q 040420 97 LPDNYFCPVCGAPK 110 (169)
Q Consensus 97 lPd~~~CPvCgapK 110 (169)
.++.|.||.|...+
T Consensus 47 ~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 47 LIDEYVCPQCQSTE 60 (174)
T ss_dssp TCSSCCCHHHHHHH
T ss_pred CccCeecCCCcchh
Confidence 36889999997643
No 290
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=43.44 E-value=11 Score=24.31 Aligned_cols=13 Identities=23% Similarity=0.830 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCC
Q 040420 96 QLPDNYFCPVCGA 108 (169)
Q Consensus 96 ~lPd~~~CPvCga 108 (169)
++|+++.||+|..
T Consensus 4 ~~~~~~~C~IC~~ 16 (78)
T 1t1h_A 4 EFPEYFRCPISLE 16 (78)
T ss_dssp CCSSSSSCTTTSC
T ss_pred CCcccCCCCCccc
Confidence 4567777777765
No 291
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.28 E-value=8.5 Score=21.70 Aligned_cols=15 Identities=20% Similarity=0.800 Sum_probs=11.5
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2en9_A 10 KKLFKCNECKKTFTQ 24 (46)
T ss_dssp SCCCBCTTTCCBCSS
T ss_pred CCCEECCccCcccCC
Confidence 345899999987765
No 292
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=43.20 E-value=18 Score=26.03 Aligned_cols=28 Identities=25% Similarity=0.609 Sum_probs=20.9
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
....|.|..|-+.-+ ++...|-.|+.+|
T Consensus 69 ~~g~W~C~~C~~~N~--------~~~~~C~aC~tpk 96 (98)
T 3gj7_B 69 AIGTWDCDTCLVQNK--------PEAVKCVACETPK 96 (98)
T ss_dssp --CCEECTTTCCEEC--------TTCSBCTTTCCBC
T ss_pred CCCcccCCcCcCCCh--------hhcceecccCCCC
Confidence 345799999986554 4556999999987
No 293
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.99 E-value=7.2 Score=21.57 Aligned_cols=14 Identities=29% Similarity=1.141 Sum_probs=10.4
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (44)
T 2en7_A 11 KPYVCNECGKAFRS 24 (44)
T ss_dssp SSSCCTTTCCCCSS
T ss_pred cCeECCCCCCccCC
Confidence 45889889877654
No 294
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=42.89 E-value=20 Score=28.14 Aligned_cols=33 Identities=15% Similarity=0.703 Sum_probs=21.7
Q ss_pred eEEcCCCCeeecCC---CCCCCCC-CCCCCCCCCCCc
Q 040420 78 AYICRDCGYIYNER---KPFDQLP-DNYFCPVCGAPK 110 (169)
Q Consensus 78 ~y~C~~CGyVYd~~---tpF~~lP-d~~~CPvCgapK 110 (169)
.-.|..|...|... -+..++| .+|.||.|....
T Consensus 14 ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 14 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 45677787666542 2444555 679999998753
No 295
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=42.85 E-value=16 Score=31.31 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=17.0
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
..|..||+.+.- ..+.||.||..+.
T Consensus 209 l~Cs~C~t~W~~--------~R~~C~~Cg~~~~ 233 (309)
T 2fiy_A 209 LSCSLCACEWHY--------VRIKCSHCEESKH 233 (309)
T ss_dssp EEETTTCCEEEC--------CTTSCSSSCCCSC
T ss_pred EEeCCCCCEEee--------cCcCCcCCCCCCC
Confidence 377777766532 2359999999743
No 296
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=42.81 E-value=3.3 Score=39.58 Aligned_cols=27 Identities=30% Similarity=0.816 Sum_probs=19.7
Q ss_pred EcCCCCeeecCC--CCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNER--KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~--tpF~~lPd~~~CPvCga 108 (169)
+|..|-..|+.. -.|...|. .||.||=
T Consensus 163 mC~~C~~EY~dp~~RRfhAqp~--aC~~CGP 191 (761)
T 3vth_A 163 MCEKCSREYHDPHDRRFHAQPV--ACFDCGP 191 (761)
T ss_dssp CCHHHHHHHTCTTSTTTTCTTC--CCTTTSC
T ss_pred CCHHHHHHhcCcccccccCCCC--cCCccCC
Confidence 677777667652 36777788 9999975
No 297
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=42.78 E-value=12 Score=37.09 Aligned_cols=30 Identities=17% Similarity=0.475 Sum_probs=21.6
Q ss_pred CeEEcCCCC-eeecCCC----CCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCG-YIYNERK----PFDQLPDNYFCPVCGA 108 (169)
Q Consensus 77 ~~y~C~~CG-yVYd~~t----pF~~lPd~~~CPvCga 108 (169)
..|.|..|| +.|.+-. .|...-. .||.|..
T Consensus 274 ~~~~c~~~g~~~~~~~~p~~FSfN~p~G--aCp~C~G 308 (993)
T 2ygr_A 274 EKLACPNGHALAVDDLEPRSFSFNSPYG--ACPDCSG 308 (993)
T ss_dssp SSCBCTTCCCCSCSCCCGGGGCTTSTTT--BCTTTTT
T ss_pred ccccCCCCCCcccCCCChhhcCcCCCCC--CCCCCcC
Confidence 358999999 9887642 4555323 8999975
No 298
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.76 E-value=7.6 Score=21.84 Aligned_cols=15 Identities=27% Similarity=0.972 Sum_probs=11.6
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eq1_A 10 EKPYKCNECGKAFRA 24 (46)
T ss_dssp SCCCCCTTTTCCCSS
T ss_pred CCCeECCcCChhhCC
Confidence 345899999988765
No 299
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=42.72 E-value=5.7 Score=33.22 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=21.5
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCe
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRF 113 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F 113 (169)
...+..|..||.+-+. + .|++|..+++.-
T Consensus 51 ~~~i~~C~~C~nlte~--------~--~C~IC~d~~Rd~ 79 (228)
T 1vdd_A 51 KRDLHVCPICFNITDA--------E--KCDVCADPSRDQ 79 (228)
T ss_dssp HHHCEECSSSCCEESS--------S--SCHHHHCSSSCT
T ss_pred HhcCeEcCCCCCCcCC--------C--cCCCCCCCCcCC
Confidence 3457899999987542 3 799998877654
No 300
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.49 E-value=6.9 Score=22.04 Aligned_cols=15 Identities=27% Similarity=0.977 Sum_probs=11.5
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2eq2_A 10 GKPYQCNECGKAFSQ 24 (46)
T ss_dssp SCSSSCCSSCCCCSS
T ss_pred CCCeECCCCCcccCC
Confidence 345899999987765
No 301
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=42.34 E-value=5.7 Score=32.62 Aligned_cols=9 Identities=33% Similarity=1.172 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 040420 100 NYFCPVCGA 108 (169)
Q Consensus 100 ~~~CPvCga 108 (169)
+++|..||.
T Consensus 42 E~VCsdCGL 50 (197)
T 3k1f_M 42 DVVCALCGL 50 (197)
T ss_dssp EEEETTTCB
T ss_pred EEEEcCCCC
Confidence 346666665
No 302
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.91 E-value=7.3 Score=21.84 Aligned_cols=15 Identities=33% Similarity=0.928 Sum_probs=11.4
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~f~~ 24 (46)
T 2ep1_A 10 EKPYECSDCGKSFIK 24 (46)
T ss_dssp CCSSCCSSSCCCCSS
T ss_pred CCCcCCCCCCchhCC
Confidence 345899999987765
No 303
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.83 E-value=7.7 Score=21.90 Aligned_cols=14 Identities=21% Similarity=0.847 Sum_probs=10.9
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2eoh_A 11 KPYECKECRKTFIQ 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCcCCCCcCchhCC
Confidence 45899999987765
No 304
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.66 E-value=28 Score=21.73 Aligned_cols=10 Identities=20% Similarity=0.570 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 040420 100 NYFCPVCGAP 109 (169)
Q Consensus 100 ~~~CPvCgap 109 (169)
...||+|+.+
T Consensus 50 ~~~CP~Cr~~ 59 (66)
T 2ecy_A 50 SPKCTACQES 59 (66)
T ss_dssp SCCCTTTCCC
T ss_pred cCCCCCCCcC
Confidence 3479999875
No 305
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.65 E-value=8.9 Score=21.61 Aligned_cols=14 Identities=21% Similarity=0.963 Sum_probs=11.0
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2yth_A 11 KPFQCEECGKRFTQ 24 (46)
T ss_dssp SSBCCSSSCCCBSS
T ss_pred cCCCCCCCCcccCC
Confidence 45899999987765
No 306
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=41.63 E-value=14 Score=26.67 Aligned_cols=31 Identities=29% Similarity=0.718 Sum_probs=18.6
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCC
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCG 107 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCg 107 (169)
..-.|..|...|-. .-|..++| ++|.||.|.
T Consensus 72 ~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~ 106 (114)
T 2kwj_A 72 QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW 106 (114)
T ss_dssp TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred ceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence 34455555544433 23566777 479999994
No 307
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=41.39 E-value=6.9 Score=37.37 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=23.1
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
.-+|+.|+-..++=..|++--..|+|+.|+..-
T Consensus 112 pvRC~~CrayiNPf~~~~~~g~~W~C~~C~~~N 144 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN 144 (810)
T ss_dssp CCBCTTTCCBCCTTCEEETTTTEEECTTTCCEE
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCcC
Confidence 679999996655544444434569999999743
No 308
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=41.23 E-value=14 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.787 Sum_probs=13.2
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
....|.|++|+-+|..
T Consensus 26 ~~~l~pCRvC~RvfH~ 41 (89)
T 1wil_A 26 AESLFPCRVCTRVFHD 41 (89)
T ss_dssp SSCCSSCSSSSSCCCH
T ss_pred ccceeccccccccccH
Confidence 4567999999998875
No 309
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=41.08 E-value=15 Score=30.37 Aligned_cols=17 Identities=29% Similarity=1.118 Sum_probs=12.6
Q ss_pred CCCCCCCC--CCCCCCCCC
Q 040420 92 KPFDQLPD--NYFCPVCGA 108 (169)
Q Consensus 92 tpF~~lPd--~~~CPvCga 108 (169)
-|..++|+ +|.||.|..
T Consensus 206 PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 206 PPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp CCCCSCCSSSCCCCGGGC-
T ss_pred CCcccCCCCCCCCCcCCcC
Confidence 36677886 599999964
No 310
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.74 E-value=10 Score=21.14 Aligned_cols=15 Identities=27% Similarity=0.913 Sum_probs=10.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 8 ~k~~~C~~C~k~f~~ 22 (43)
T 2yrm_A 8 NGAFFCNECDCRFSE 22 (43)
T ss_dssp SCCBCCSSSCCCBSS
T ss_pred CCCEECCCCCCeeCC
Confidence 345888888877764
No 311
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=40.42 E-value=8.1 Score=30.09 Aligned_cols=24 Identities=29% Similarity=0.700 Sum_probs=17.6
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
+|..||....+. -+...||.||.-
T Consensus 142 ~~~~~g~~m~~~------~~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCSNCKTEMVRE------GDILKCPECGRV 165 (179)
T ss_dssp BCTTTCCBCEEC------SSSEECSSSCCE
T ss_pred cccccCCceEEC------CCEEECCCCCCE
Confidence 899999776542 144699999983
No 312
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.67 E-value=8.7 Score=21.65 Aligned_cols=14 Identities=21% Similarity=0.873 Sum_probs=10.3
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~f~~ 24 (46)
T 2emz_A 11 RPFKCNECGKGFGR 24 (46)
T ss_dssp CSCCCSSSCCCCSS
T ss_pred CCeECCCCCcccCC
Confidence 35888888877654
No 313
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=39.60 E-value=7.4 Score=25.20 Aligned_cols=11 Identities=36% Similarity=0.760 Sum_probs=8.3
Q ss_pred CCCCCCCCCcc
Q 040420 101 YFCPVCGAPKR 111 (169)
Q Consensus 101 ~~CPvCgapK~ 111 (169)
..||+|+.+-.
T Consensus 53 ~~CP~Cr~~~~ 63 (78)
T 2ect_A 53 DSCPVCRKSLT 63 (78)
T ss_dssp CSCTTTCCCCC
T ss_pred CcCcCcCCccC
Confidence 48999988543
No 314
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=39.55 E-value=17 Score=30.93 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=19.1
Q ss_pred eEEcCC--CCeeecCCC-----CCCCCCCCCCCCCCCCC
Q 040420 78 AYICRD--CGYIYNERK-----PFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~--CGyVYd~~t-----pF~~lPd~~~CPvCgap 109 (169)
..+|.. ||+.|+... +=+.+| .||.||..
T Consensus 159 ~~~C~~~~C~~~~~~~~~~~~i~~~~~P---~C~~Cgg~ 194 (323)
T 1j8f_A 159 TSHCVSASCRHEYPLSWMKEKIFSEVTP---KCEDCQSL 194 (323)
T ss_dssp EEEESCTTTCCEECHHHHHHHHHTTCCC---BCTTTCCB
T ss_pred eeecCCCccCccccHHHHHHhhccCCCC---CCcCCCCc
Confidence 679999 999986311 001223 69999963
No 315
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=39.19 E-value=14 Score=18.02 Aligned_cols=13 Identities=38% Similarity=1.316 Sum_probs=10.1
Q ss_pred eEEcC--CCCeeecC
Q 040420 78 AYICR--DCGYIYNE 90 (169)
Q Consensus 78 ~y~C~--~CGyVYd~ 90 (169)
.|+|. .||..|..
T Consensus 2 ~~~C~~~~C~k~f~~ 16 (29)
T 2ab3_A 2 VYVCHFENCGRSFND 16 (29)
T ss_dssp CEEECSTTTCEEESS
T ss_pred CCCCcCCcCcCccCC
Confidence 38899 99988753
No 316
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=38.68 E-value=7.9 Score=37.76 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=23.1
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
.-+|+.|+-..++=..|++--..|+|+.|+..-
T Consensus 228 pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~~~N 260 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLAN 260 (926)
T ss_dssp CCBCSSSCCBCCTTCEEETTTTEEECTTTCCEE
T ss_pred CCccCCccCEecCceEEeCCCCEEEccCCCCCC
Confidence 679999996655544444434569999999743
No 317
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=38.50 E-value=6.2 Score=37.49 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=22.9
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..-+|+.|+-.-++=..|.+--..|+|+.|+..
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~ 125 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCI 125 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCE
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEecccccc
Confidence 457999999655554444443357999999874
No 318
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.14 E-value=7.7 Score=21.82 Aligned_cols=14 Identities=29% Similarity=1.151 Sum_probs=10.8
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..|+|..||..|..
T Consensus 11 k~~~C~~C~k~F~~ 24 (46)
T 2yti_A 11 KPYKCNECGKVFTQ 24 (46)
T ss_dssp CTTCCSSSCCCCSS
T ss_pred cCeECCCCCcccCC
Confidence 45899999977765
No 319
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=38.02 E-value=40 Score=26.24 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=18.6
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..++|..||.+|... +.||.|+..
T Consensus 123 ~R~~~~~~g~~y~~~---------~~pp~~g~~ 146 (206)
T 3sr0_A 123 GRRINPETGEVYHVK---------YNPPPPGVK 146 (206)
T ss_dssp TEEECTTTCCEEETT---------TBCCCTTCC
T ss_pred CCccccCCCceeeee---------ccCCCCCce
Confidence 479999999999753 367888763
No 320
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.89 E-value=17 Score=21.76 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=6.6
Q ss_pred eEEcCCCCeeec
Q 040420 78 AYICRDCGYIYN 89 (169)
Q Consensus 78 ~y~C~~CGyVYd 89 (169)
.+.|.+|...+.
T Consensus 15 ~~~C~IC~~~~~ 26 (58)
T 2ecj_A 15 EASCSVCLEYLK 26 (58)
T ss_dssp CCBCSSSCCBCS
T ss_pred CCCCccCCcccC
Confidence 456666655443
No 321
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=37.83 E-value=14 Score=36.56 Aligned_cols=34 Identities=35% Similarity=1.025 Sum_probs=23.6
Q ss_pred CCCeEEcCCCCee--ecCCCCCCCCCCCCCCCCCCCCccCee
Q 040420 75 SKQAYICRDCGYI--YNERKPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 75 ~~~~y~C~~CGyV--Yd~~tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
....|+|..||.+ |+.. -..|.|++|+....-..
T Consensus 1058 ~~~~~vc~~cG~~~~~~~~------~~~~~c~~~~~~~~i~~ 1093 (1131)
T 4ayb_B 1058 RTTIYVCDQCGYIGWYDKN------KNKYVCPIHGDKSNLFP 1093 (1131)
T ss_dssp EEEEEECSSSCCBCEEETT------TTEEECSSCSSSSCCEE
T ss_pred ccceeeccCCCceEEEecc------CCceeCCccCCCCCccc
Confidence 4458999999954 5542 34568999997655444
No 322
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.76 E-value=9.7 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.786 Sum_probs=10.9
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 10 ~k~~~C~~C~k~F~~ 24 (46)
T 2eom_A 10 ERGHRCSDCGKFFLQ 24 (46)
T ss_dssp CSSCCCSSSCCCCSS
T ss_pred CCCcCCCCCCCeeCC
Confidence 345889999877654
No 323
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=37.70 E-value=6.3 Score=37.45 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
...-+|+.|+-.-++=..|.+--..|+|+.|+..
T Consensus 96 ~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~ 129 (770)
T 3efo_B 96 SGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCV 129 (770)
T ss_dssp TCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCE
T ss_pred CCCCccCCCCCCcCCceEEecCCCEEEecccccc
Confidence 3467999999655554444443457999999874
No 324
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=37.56 E-value=14 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.835 Sum_probs=11.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
+..|+|..||..|..
T Consensus 6 ekp~~C~~CgK~F~~ 20 (36)
T 1fv5_A 6 PARFMCLPCGIAFSS 20 (36)
T ss_dssp CCCCEETTTTEECSC
T ss_pred ccCeECCCCCCccCC
Confidence 346999999987754
No 325
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=36.86 E-value=28 Score=23.08 Aligned_cols=28 Identities=25% Similarity=0.630 Sum_probs=20.3
Q ss_pred CCCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 74 ASKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 74 ~~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
...+.|+|..|+ .++.. ++. .|-.|-+-
T Consensus 7 ~~eD~WkC~~C~-k~N~P-----l~r--yC~rCwaL 34 (53)
T 2cr8_A 7 GSEDEWQCTECK-KFNSP-----SKR--YCFRCWAL 34 (53)
T ss_dssp CCSCCEECSSSC-CEECS-----SCC--BCTTTCCB
T ss_pred CCcceeeccccc-ccCCC-----ccc--hhHHHHHh
Confidence 466789999999 55542 345 89999773
No 326
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=36.53 E-value=21 Score=19.05 Aligned_cols=15 Identities=40% Similarity=1.043 Sum_probs=10.3
Q ss_pred CCeEEcC--CCCeeecC
Q 040420 76 KQAYICR--DCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~--~CGyVYd~ 90 (169)
...|+|. .||..|..
T Consensus 6 ~k~~~C~~~~C~k~f~~ 22 (37)
T 1va1_A 6 KKQHICHIQGCGKVYGK 22 (37)
T ss_dssp CCCEECCSTTCCCEESC
T ss_pred CCCCCCCCCCCCCccCC
Confidence 3458888 48877753
No 327
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.46 E-value=27 Score=25.03 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=19.9
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPV 105 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPv 105 (169)
..|+|+ ||.+|-..+. .||+-.|+.
T Consensus 39 ~~f~Cr-Cg~~FC~~HR---y~e~H~C~f 63 (85)
T 1wff_A 39 TSFECR-CGNNFCASHR---YAEAHGCNY 63 (85)
T ss_dssp SCEECT-TCCEECTTTC---STGGGTCCS
T ss_pred CCeEcC-CCCEecccCC---CccCCCCcc
Confidence 479998 9999999875 467777874
No 328
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=36.15 E-value=10 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
...-+|+.|+-.-++=..|-+ -..|+|+.|+..-
T Consensus 83 ~~p~RC~rCrayiNPf~~f~~-~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 83 NTIVRCRSCRTYINPFVSFID-QRRWKCNLCYRVN 116 (751)
T ss_dssp SCCCBCTTTCCBCCTTCEESS-SSEEECTTTCCEE
T ss_pred CCCCcccCccCEeCCceEEec-CCEEEcccccCCC
Confidence 346899999966555444433 2679999998643
No 329
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=35.10 E-value=8.3 Score=25.99 Aligned_cols=25 Identities=40% Similarity=0.685 Sum_probs=15.3
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
.-.|.+|+..- ..+..|.||.|+.+
T Consensus 11 ~~~C~vC~~~~-------~~~akY~CPrC~~r 35 (59)
T 1x4s_A 11 AGPCGFCPAGE-------VQPARYTCPRCNAP 35 (59)
T ss_dssp CEEECSSCTTC-------CEEECEECTTTCCE
T ss_pred CCcCcCCCCCc-------CCCccccCcCCCCC
Confidence 35788887210 01446789999863
No 330
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=33.99 E-value=30 Score=23.65 Aligned_cols=25 Identities=20% Similarity=0.623 Sum_probs=15.6
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-|++|++...... + .....||.|+.
T Consensus 27 wCP~C~~~~~~~~---~-~~~v~C~~C~~ 51 (86)
T 2ct7_A 27 WCAQCSFGFIYER---E-QLEATCPQCHQ 51 (86)
T ss_dssp CCSSSCCCEECCC---S-CSCEECTTTCC
T ss_pred ECcCCCchheecC---C-CCceEeCCCCC
Confidence 3999998664431 1 12258998875
No 331
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=33.82 E-value=20 Score=26.24 Aligned_cols=16 Identities=19% Similarity=0.671 Sum_probs=11.5
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
....|.|..||+|.-+
T Consensus 33 ~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 33 IQENWVCLSCYQVYCG 48 (109)
T ss_dssp CSSEEEETTTCCEEEC
T ss_pred CCCeeeeeecCccccC
Confidence 3457888888888765
No 332
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=33.66 E-value=16 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCC
Q 040420 96 QLPDNYFCPVCGA 108 (169)
Q Consensus 96 ~lPd~~~CPvCga 108 (169)
.+|+.|.||.|..
T Consensus 53 ~~~~~~~C~~C~~ 65 (72)
T 1wee_A 53 ALPSKFLCFRCIE 65 (72)
T ss_dssp CCCSCCCCHHHHH
T ss_pred cCCCcEECCCccC
Confidence 4688999999954
No 333
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=33.30 E-value=17 Score=24.48 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=11.7
Q ss_pred CCCeEEcCCCCeeec
Q 040420 75 SKQAYICRDCGYIYN 89 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd 89 (169)
....|.|..||..|-
T Consensus 33 ~Vp~~~C~~CGE~~~ 47 (78)
T 3ga8_A 33 GIHGLYCVHCEESIM 47 (78)
T ss_dssp EEEEEEETTTCCEEC
T ss_pred CceeEECCCCCCEEE
Confidence 445899999997774
No 334
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=32.71 E-value=19 Score=26.87 Aligned_cols=14 Identities=43% Similarity=0.854 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeec
Q 040420 76 KQAYICRDCGYIYN 89 (169)
Q Consensus 76 ~~~y~C~~CGyVYd 89 (169)
.+.|+|..||.|..
T Consensus 5 ~~fYkC~~CGnive 18 (126)
T 1vzi_A 5 LQVYKCEVCGNIVE 18 (126)
T ss_dssp TCEEECTTTCCEEE
T ss_pred CcEEEcCCCCeEEE
Confidence 46899999999885
No 335
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=32.68 E-value=15 Score=27.47 Aligned_cols=12 Identities=50% Similarity=1.256 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCc
Q 040420 99 DNYFCPVCGAPK 110 (169)
Q Consensus 99 d~~~CPvCgapK 110 (169)
..|+||+||+-.
T Consensus 70 R~Y~CpiCGATG 81 (106)
T 3alr_A 70 RQYKCPLCGATG 81 (106)
T ss_dssp GGCCCTTTCCCG
T ss_pred ccccCCCCCCcC
Confidence 348999999954
No 336
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=32.64 E-value=19 Score=23.44 Aligned_cols=14 Identities=36% Similarity=0.847 Sum_probs=11.0
Q ss_pred CCeEEcCCCCeeec
Q 040420 76 KQAYICRDCGYIYN 89 (169)
Q Consensus 76 ~~~y~C~~CGyVYd 89 (169)
...|.|..|||++.
T Consensus 34 ~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 34 ADRYSCGRCGYTEF 47 (55)
T ss_dssp SSEEECTTTCCCEE
T ss_pred CCEEECCCCCCEEE
Confidence 45889999998874
No 337
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=32.60 E-value=16 Score=25.12 Aligned_cols=27 Identities=30% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-+|++|+.+-. =|+..-....|.+|+.
T Consensus 8 VKCp~C~niq~---VFShA~tvV~C~~Cg~ 34 (66)
T 1qxf_A 8 VKCPDCEHEQV---IFDHPSTIVKCIICGR 34 (66)
T ss_dssp EECTTTCCEEE---EESSCSSCEECSSSCC
T ss_pred EECCCCCCceE---EEecCceEEEcccCCC
Confidence 48999996532 2444445568999987
No 338
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=32.23 E-value=21 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
.-.|.+||...+.. |.-+=- +||.|+.-..+
T Consensus 37 ~I~CnDC~~~s~v~--~h~lg~--kC~~C~SyNTr 67 (79)
T 2k2d_A 37 DILCNDCNGRSTVQ--FHILGM--KCKICESYNTA 67 (79)
T ss_dssp EEEESSSCCEEEEE--CCTTCC--CCTTTSCCCEE
T ss_pred EEECCCCCCCccCC--ceeecc--cCcCCCCcCeE
Confidence 35899999877542 222211 79999985544
No 339
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=31.91 E-value=33 Score=21.41 Aligned_cols=28 Identities=29% Similarity=0.688 Sum_probs=19.2
Q ss_pred CCeEEcC--CCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 76 KQAYICR--DCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 76 ~~~y~C~--~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
...|+|. .||++=-. ..-.|=.|++++.
T Consensus 12 ~GDW~C~~~~C~~~Nfa--------~R~~C~~C~~pr~ 41 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFA--------RRTSCDRCGREKT 41 (45)
T ss_dssp SSSCBCSSTTTCCBCCS--------SCSBCSSSCCBCC
T ss_pred CCCcCCCCCCCCCEEcc--------ccccccccCCcCC
Confidence 4569999 79976322 2227999998864
No 340
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.81 E-value=25 Score=30.45 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=17.7
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
.-+|+-||-.|.+.. ..-.|++|+..
T Consensus 278 ~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 303 (320)
T 3mkr_B 278 VEKCPLSGACYSPEF------KGQICKVTTVT 303 (320)
T ss_dssp CEECTTTCCEECGGG------TTSBCTTTSSB
T ss_pred CccCCCCCCeechhh------CCCCCCCCcCc
Confidence 458999998887641 12278888763
No 341
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=31.74 E-value=22 Score=21.48 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=12.7
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
.++.|+|.+|+++.-.
T Consensus 25 ~~qg~~C~~C~~~~H~ 40 (50)
T 1ptq_A 25 VKQGLKCEDCGMNVHH 40 (50)
T ss_dssp SSCEEEETTTCCEECH
T ss_pred CCccCEeCCCCCeECH
Confidence 3578999999988654
No 342
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=31.52 E-value=41 Score=21.69 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.1
Q ss_pred CCCeEEcCCCCeeecCC
Q 040420 75 SKQAYICRDCGYIYNER 91 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~ 91 (169)
..+.|+|.+|++..-.+
T Consensus 37 ~~qg~~C~~C~~~~Hk~ 53 (65)
T 2enz_A 37 ARQGLKCDACGMNVHHR 53 (65)
T ss_dssp SSCSEEESSSCCEECTT
T ss_pred CCcccccCCCCCccCHh
Confidence 34679999999887654
No 343
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=31.47 E-value=7.7 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.628 Sum_probs=8.8
Q ss_pred CCCCCCCCCCcc
Q 040420 100 NYFCPVCGAPKR 111 (169)
Q Consensus 100 ~~~CPvCgapK~ 111 (169)
...||+|+.+-.
T Consensus 58 ~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 58 PSQCPLCKNDIT 69 (112)
T ss_dssp SCCCTTTSCCCC
T ss_pred CCCCcCCCCcCC
Confidence 358999988543
No 344
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=31.33 E-value=11 Score=31.20 Aligned_cols=30 Identities=20% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCee
Q 040420 75 SKQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFR 114 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~ 114 (169)
...+..|..||.+-+. | .|++|..+++.-.
T Consensus 65 ~~~i~~C~~C~nlte~--------~--~C~IC~d~~Rd~~ 94 (212)
T 3vdp_A 65 KEKLRYCKICFNITDK--------E--VCDICSDENRDHS 94 (212)
T ss_dssp HHHCEECTTTCCEESS--------S--SCHHHHCTTSEEE
T ss_pred HHhCCcCCCCCCCCCC--------C--cCCCCCCCCCCCC
Confidence 3357899999977653 3 7999988777554
No 345
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=30.93 E-value=39 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.648 Sum_probs=17.7
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
=+|..||.++-... +-+.|.|+||..=+..
T Consensus 6 ~~C~eC~~~~~d~~----l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 6 VICEECGKEFMDSY----LMDHFDLPTCDDCRDA 35 (111)
T ss_dssp EECTTTCCEESCSS----STTTTSCCCCTTTCSS
T ss_pred CccccCCChhhHHH----HHHhCCeeechhhccc
Confidence 47999998775432 3344555555554433
No 346
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=30.85 E-value=5.3 Score=29.25 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=9.4
Q ss_pred CCCCCCCCCccCe
Q 040420 101 YFCPVCGAPKRRF 113 (169)
Q Consensus 101 ~~CPvCgapK~~F 113 (169)
..||+|+.+-..+
T Consensus 88 ~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 88 IECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCCBCCCE
T ss_pred CcCCCCCCcCCCC
Confidence 3799999865443
No 347
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=30.57 E-value=23 Score=22.74 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=12.8
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
.++.|+|.+||++.-.
T Consensus 33 ~kqg~kC~~C~~~cH~ 48 (59)
T 1rfh_A 33 LRQALRCANCKFTCHS 48 (59)
T ss_dssp CSCCEECTTTSCEECH
T ss_pred hhCccEeCCCCCeEeh
Confidence 4678999999988754
No 348
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.52 E-value=27 Score=30.36 Aligned_cols=27 Identities=7% Similarity=-0.082 Sum_probs=17.9
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
..-+|+-||-.|.+.. ..-.|++|+..
T Consensus 286 ~~v~Cp~cgA~y~~~~------kG~lC~vC~l~ 312 (325)
T 3mv2_A 286 PSVSDPLTGSKYVITE------KDKIDRIAMIS 312 (325)
T ss_dssp CEEECTTTCCEEEGGG------TTSBCSSSSCB
T ss_pred CCccCCCCCCeechhh------CCCCCCCCcCc
Confidence 3458888888887641 12278888763
No 349
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=30.38 E-value=23 Score=23.81 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.2
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
..+.|+|.+|||..-.
T Consensus 46 ~~qG~kC~~C~~~cHk 61 (72)
T 2fnf_X 46 LRQALRCANCKFTCHS 61 (72)
T ss_dssp SSCCEECTTSSCEECT
T ss_pred HhCcCccCCCCCeech
Confidence 5678999999998765
No 350
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.35 E-value=20 Score=26.59 Aligned_cols=31 Identities=26% Similarity=0.712 Sum_probs=22.5
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccCeee
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRRFRP 115 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~F~~ 115 (169)
.+.|.|..|+-.|... . .||.|+.+-...+.
T Consensus 46 g~~~hC~~C~~~f~~~-------a--~CPdC~q~LevLkA 76 (101)
T 2jne_A 46 NGHARCRSCGEFIEMK-------A--LCPDCHQPLQVLKA 76 (101)
T ss_dssp TTEEEETTTCCEEEEE-------E--ECTTTCSBCEEEEE
T ss_pred CCEEECccccchhhcc-------c--cCcchhhHHHHHHH
Confidence 3467799999877642 2 79999998776654
No 351
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.12 E-value=30 Score=29.30 Aligned_cols=14 Identities=21% Similarity=0.771 Sum_probs=7.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..++|..||.|.++
T Consensus 41 G~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 41 GDVVCALCGLVLSD 54 (345)
T ss_dssp CSCCCSSSCCCCCC
T ss_pred CCEecCCCCeEccc
Confidence 34555555555543
No 352
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=29.92 E-value=63 Score=21.61 Aligned_cols=12 Identities=33% Similarity=1.121 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCc
Q 040420 99 DNYFCPVCGAPK 110 (169)
Q Consensus 99 d~~~CPvCgapK 110 (169)
..|.||.|...+
T Consensus 55 g~w~Cp~C~~~~ 66 (71)
T 1wen_A 55 GKWFCPRCSQES 66 (71)
T ss_dssp SCCCCTTTSSCS
T ss_pred CCEECCCCCccc
Confidence 789999997643
No 353
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=29.83 E-value=43 Score=20.98 Aligned_cols=18 Identities=28% Similarity=0.696 Sum_probs=11.6
Q ss_pred HHHHH--HHHHHHHHHHHhh
Q 040420 149 IAIAV--AAVALAGLYFYLN 166 (169)
Q Consensus 149 i~~~~--G~~al~~l~fyl~ 166 (169)
|+++. +++++.++|||-+
T Consensus 13 vgtv~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 13 VATVAGMGVIVIVGLFFYGA 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhhheeeEEEeec
Confidence 45555 4566777888854
No 354
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.76 E-value=43 Score=20.51 Aligned_cols=10 Identities=50% Similarity=1.341 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 040420 100 NYFCPVCGAP 109 (169)
Q Consensus 100 ~~~CPvCgap 109 (169)
...||+|+..
T Consensus 37 ~~~CP~Cr~~ 46 (56)
T 1bor_A 37 GMQCPICQAP 46 (56)
T ss_dssp SSSCSSCCSS
T ss_pred CCCCCcCCcE
Confidence 3489999874
No 355
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=29.57 E-value=15 Score=24.13 Aligned_cols=16 Identities=19% Similarity=0.611 Sum_probs=12.8
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
....|+|..||+.|..
T Consensus 10 ~ekpy~C~~CgK~F~~ 25 (66)
T 2epp_A 10 EAGILPCGLCGKVFTD 25 (66)
T ss_dssp CCCCCCCTTTCCCCSC
T ss_pred CccCcCCCCCCCccCC
Confidence 3446999999988876
No 356
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=29.33 E-value=48 Score=22.45 Aligned_cols=28 Identities=18% Similarity=0.578 Sum_probs=21.4
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCccC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKRR 112 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~~ 112 (169)
..|.|..|.|+-.... -.|-.|+.+...
T Consensus 7 ~~W~CP~CTf~N~p~~--------p~CEmC~~prp~ 34 (64)
T 3b08_B 7 VGWQCPGCTFINKPTR--------PGCEMCCRARPE 34 (64)
T ss_dssp CSEECTTTCCEECTTC--------SBCTTTCCBCCS
T ss_pred CCCcCCCccccCCCCC--------CccCcCCCCCCc
Confidence 4799999998876542 279999987543
No 357
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=29.11 E-value=41 Score=21.72 Aligned_cols=28 Identities=18% Similarity=0.538 Sum_probs=20.7
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCCcc
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAPKR 111 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgapK~ 111 (169)
...|.|..|.|+-... .-.|-+|+.+..
T Consensus 8 ~~~W~Cp~CTf~N~p~--------~~~CemC~~prp 35 (52)
T 2crc_A 8 PVGWQCPGCTFINKPT--------RPGCEMCCRARP 35 (52)
T ss_dssp SSSBCCTTTCCCBCTT--------CSSCSSSCCCCC
T ss_pred CCCccCCCcccccCCC--------CCeeCCCCCcCC
Confidence 3479999999877543 337999998744
No 358
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.11 E-value=28 Score=22.06 Aligned_cols=9 Identities=22% Similarity=0.670 Sum_probs=7.5
Q ss_pred CCCCCCCCC
Q 040420 101 YFCPVCGAP 109 (169)
Q Consensus 101 ~~CPvCgap 109 (169)
..||+|+..
T Consensus 50 ~~CP~Cr~~ 58 (71)
T 2d8t_A 50 KRCALCRQE 58 (71)
T ss_dssp SBCSSSCCB
T ss_pred CcCcCcCch
Confidence 489999875
No 359
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=29.08 E-value=22 Score=22.82 Aligned_cols=34 Identities=24% Similarity=0.667 Sum_probs=21.7
Q ss_pred CCeEEcCCCCeeecCC---CCCCC--C--CCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER---KPFDQ--L--PDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~---tpF~~--l--Pd~~~CPvCgap 109 (169)
...-.|..|+..|-.. -|..+ + ..+|.|+.|...
T Consensus 21 ~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 21 NEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp BCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4567888888776542 23333 2 367999999653
No 360
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.77 E-value=42 Score=23.48 Aligned_cols=23 Identities=30% Similarity=0.829 Sum_probs=17.5
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCP 104 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CP 104 (169)
.|.|+ ||.+|-..+. +||+-.|+
T Consensus 39 gf~Cr-Cg~~FCs~HR---y~e~H~C~ 61 (74)
T 1wfl_A 39 GFDCR-CGNLFCGLHR---YSDKHNCP 61 (74)
T ss_dssp CEECT-TSCEECSSSC---STTTTTCC
T ss_pred CeecC-CCCEechhcC---CCccCCCc
Confidence 59999 9999988764 46655664
No 361
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=28.66 E-value=36 Score=21.88 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=18.5
Q ss_pred CCeEEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
.+.|+|..|+ .++.. ++. .|-.|-+-
T Consensus 11 ~D~WkC~~C~-~~N~P-----l~r--~C~rCw~L 36 (46)
T 2c6a_A 11 ADYWKCTSCN-EMNPP-----LPS--HCNRCWAL 36 (46)
T ss_dssp GGCEECTTTC-CEECS-----SCS--SCTTTCCC
T ss_pred cceEeccccc-ccCCC-----ccc--hhhHHHhh
Confidence 3789999999 55542 355 88888763
No 362
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.57 E-value=23 Score=22.53 Aligned_cols=15 Identities=20% Similarity=0.467 Sum_probs=11.9
Q ss_pred CCCCCCCCCccCeee
Q 040420 101 YFCPVCGAPKRRFRP 115 (169)
Q Consensus 101 ~~CPvCgapK~~F~~ 115 (169)
+.||+|+.+-..+++
T Consensus 45 ~~CPiCR~~i~~~i~ 59 (63)
T 2vje_B 45 ASCPICKKEIQLVIK 59 (63)
T ss_dssp CBCTTTCCBCCEEEE
T ss_pred CcCCCcCchhhceEE
Confidence 489999998776654
No 363
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=28.25 E-value=9.4 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.614 Sum_probs=18.3
Q ss_pred CeEEcCCCCeeecC---CCCCCCCC-CCCCCCCCCCCc
Q 040420 77 QAYICRDCGYIYNE---RKPFDQLP-DNYFCPVCGAPK 110 (169)
Q Consensus 77 ~~y~C~~CGyVYd~---~tpF~~lP-d~~~CPvCgapK 110 (169)
..-.|..|...|-. +.+ .+| .+|.||.|...+
T Consensus 32 ~ll~CD~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 32 VILFCDMCNLAVHQECYGVP--YIPEGQWLCRHCLQSR 67 (71)
T ss_dssp CEEECSSSCCEEEHHHHTCS--SCCSSCCCCHHHHHHH
T ss_pred CEEECCCCCCccccccCCCC--cCCCCCcCCccCcCcC
Confidence 44556666544432 112 345 579999996544
No 364
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.18 E-value=35 Score=24.83 Aligned_cols=16 Identities=19% Similarity=0.578 Sum_probs=13.3
Q ss_pred CCeEEcCCCCeeecCC
Q 040420 76 KQAYICRDCGYIYNER 91 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~ 91 (169)
.-+|+|+.||..+.+.
T Consensus 49 ~F~FkCP~CgEEFyG~ 64 (95)
T 2k5c_A 49 EFVFKCPVCGEEFYGK 64 (95)
T ss_dssp HSEEECTTTCCEEETT
T ss_pred HHhhcCCCccHHHhcc
Confidence 3479999999888875
No 365
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=28.17 E-value=18 Score=32.02 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCc
Q 040420 99 DNYFCPVCGAPK 110 (169)
Q Consensus 99 d~~~CPvCgapK 110 (169)
..|.||+|+..-
T Consensus 287 ~~W~CPIC~k~~ 298 (371)
T 3i2d_A 287 PTWQCPVCQIDI 298 (371)
T ss_dssp CCCBCTTTCCBC
T ss_pred CceeCCCCCccc
Confidence 569999998754
No 366
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=28.12 E-value=26 Score=22.39 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=11.6
Q ss_pred CCCCCCCCCccCeee
Q 040420 101 YFCPVCGAPKRRFRP 115 (169)
Q Consensus 101 ~~CPvCgapK~~F~~ 115 (169)
+.||+|+.+-..+++
T Consensus 46 ~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 46 KPCPVCRQPIQMIVL 60 (64)
T ss_dssp CCCTTTCCCCCEEEE
T ss_pred CcCCCcCcchhceEe
Confidence 489999998766654
No 367
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=27.89 E-value=32 Score=23.88 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.2
Q ss_pred CCCCCCCCCCcc
Q 040420 100 NYFCPVCGAPKR 111 (169)
Q Consensus 100 ~~~CPvCgapK~ 111 (169)
...||+|+..-.
T Consensus 50 ~~~CP~Cr~~~~ 61 (115)
T 3l11_A 50 SLCCPFCRRRVS 61 (115)
T ss_dssp TSBCTTTCCBCH
T ss_pred cCCCCCCCcccC
Confidence 458999998644
No 368
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.82 E-value=22 Score=24.24 Aligned_cols=27 Identities=33% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-+|++|+.+-. =|+..-....|.+|+.
T Consensus 16 VkCp~C~~~q~---VFSha~t~V~C~~Cgt 42 (63)
T 3j20_W 16 VKCIDCGNEQI---VFSHPATKVRCLICGA 42 (63)
T ss_dssp EECSSSCCEEE---EESSCSSCEECSSSCC
T ss_pred EECCCCCCeeE---EEecCCeEEEccCcCC
Confidence 48999996542 2444445569999997
No 369
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=27.73 E-value=19 Score=31.76 Aligned_cols=12 Identities=33% Similarity=1.043 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCc
Q 040420 99 DNYFCPVCGAPK 110 (169)
Q Consensus 99 d~~~CPvCgapK 110 (169)
..|.||+|+..-
T Consensus 253 ~~W~CPiC~k~~ 264 (360)
T 4fo9_A 253 PTWICPVCDKKA 264 (360)
T ss_dssp CCCBCTTTCSBC
T ss_pred CCeECCCCCccc
Confidence 469999999754
No 370
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.66 E-value=18 Score=24.03 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=21.3
Q ss_pred CCeEEcCCCCeeec-CCCCC-------CCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYN-ERKPF-------DQLPDNYFCPVCGAP 109 (169)
Q Consensus 76 ~~~y~C~~CGyVYd-~~tpF-------~~lPd~~~CPvCgap 109 (169)
...|+|..||..|. ....+ ......|.|++|+..
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~ 63 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ 63 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence 44699999999987 42000 000124799999863
No 371
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=27.52 E-value=22 Score=22.26 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 040420 102 FCPVCGAP 109 (169)
Q Consensus 102 ~CPvCgap 109 (169)
.||+|+.+
T Consensus 53 ~CP~Cr~~ 60 (69)
T 2kiz_A 53 KCPICRVD 60 (69)
T ss_dssp BCTTTCSB
T ss_pred CCcCcCcc
Confidence 69999874
No 372
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.25 E-value=12 Score=24.16 Aligned_cols=9 Identities=44% Similarity=1.124 Sum_probs=6.9
Q ss_pred CCCCCCCCC
Q 040420 101 YFCPVCGAP 109 (169)
Q Consensus 101 ~~CPvCgap 109 (169)
..||+|+++
T Consensus 61 ~~CP~Cr~~ 69 (75)
T 1x4j_A 61 RTCPICRAD 69 (75)
T ss_dssp SSCTTTCCC
T ss_pred CcCcCcCCc
Confidence 379999864
No 373
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=27.25 E-value=14 Score=29.15 Aligned_cols=26 Identities=27% Similarity=0.511 Sum_probs=17.7
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCgap 109 (169)
.-|+.|..-.... -.+.|.|+.|+..
T Consensus 43 ~ACp~CnKKV~~~-----~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKY-----HGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEE-----TTTEEEETTTTEE
T ss_pred hhchhhCCEeeeC-----CCCeEECCCCCCC
Confidence 3899998554321 1456999999875
No 374
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=27.20 E-value=12 Score=32.12 Aligned_cols=16 Identities=25% Similarity=0.746 Sum_probs=11.7
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
+...++|..||.|.++
T Consensus 39 ~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 39 SEGDVVCALCGLVLSD 54 (345)
T ss_dssp GGTEEEETTTCBEEES
T ss_pred CCCcEEeCCCCCCccC
Confidence 4556788888877766
No 375
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=26.88 E-value=28 Score=25.82 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.5
Q ss_pred CCCCCCCCCCc
Q 040420 100 NYFCPVCGAPK 110 (169)
Q Consensus 100 ~~~CPvCgapK 110 (169)
...||+|+.+-
T Consensus 90 ~~~CP~Cr~~~ 100 (165)
T 2ckl_B 90 NKECPTCRKKL 100 (165)
T ss_dssp CCBCTTTCCBC
T ss_pred cCCCCCCCCcC
Confidence 35899999864
No 376
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=26.58 E-value=22 Score=33.62 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=23.9
Q ss_pred CeEEcCC--CCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 77 QAYICRD--CGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 77 ~~y~C~~--CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
+.-+|+. |+-..++=..|++--..|+|+.|+..-
T Consensus 52 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N 87 (768)
T 1m2o_A 52 NPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRN 87 (768)
T ss_dssp CCCBCCSTTTCCBCCTTSCEETTTTEECCTTTCCCC
T ss_pred CCCccCCCCCCeEECCceEEeCCCCEEEcccCCCCC
Confidence 4679998 996666544444434579999998754
No 377
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=26.53 E-value=21 Score=27.16 Aligned_cols=14 Identities=36% Similarity=0.766 Sum_probs=11.5
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
..-+|+.||++|--
T Consensus 98 G~L~Cp~cgr~ypI 111 (125)
T 3q87_A 98 GSLRCDMCGLIYPI 111 (125)
T ss_dssp EEEEETTTCCEEEE
T ss_pred EEEECCCCCCEeec
Confidence 46799999999853
No 378
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.39 E-value=28 Score=23.81 Aligned_cols=14 Identities=14% Similarity=0.479 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCC
Q 040420 96 QLPDNYFCPVCGAP 109 (169)
Q Consensus 96 ~lPd~~~CPvCgap 109 (169)
..+++|.||+|...
T Consensus 3 ~~~~~~~CPI~~~~ 16 (94)
T 2yu4_A 3 SGSSGFTCPITKEE 16 (94)
T ss_dssp SCSSCCBCTTTCSB
T ss_pred CCCcEeECcCcCch
Confidence 34677888888753
No 379
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=26.38 E-value=19 Score=23.93 Aligned_cols=13 Identities=31% Similarity=1.030 Sum_probs=7.9
Q ss_pred CCCCCCCCCCCCC
Q 040420 96 QLPDNYFCPVCGA 108 (169)
Q Consensus 96 ~lPd~~~CPvCga 108 (169)
++++++.||+|..
T Consensus 9 ~~~~~~~C~IC~~ 21 (92)
T 3ztg_A 9 PIPDELLCLICKD 21 (92)
T ss_dssp CCCTTTEETTTTE
T ss_pred cCCcCCCCCCCCh
Confidence 4556666777653
No 380
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.29 E-value=19 Score=18.16 Aligned_cols=11 Identities=27% Similarity=1.068 Sum_probs=7.7
Q ss_pred EEcC--CCCeeec
Q 040420 79 YICR--DCGYIYN 89 (169)
Q Consensus 79 y~C~--~CGyVYd 89 (169)
|+|. .||..|.
T Consensus 3 ~~C~~~~C~k~f~ 15 (31)
T 1sp2_A 3 FMCTWSYCGKRFT 15 (31)
T ss_dssp CBCCSTTCCCBCS
T ss_pred cCCcCCCCCcccC
Confidence 6776 7886664
No 381
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=26.18 E-value=26 Score=23.31 Aligned_cols=14 Identities=29% Similarity=0.847 Sum_probs=11.2
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
-.|.|+.||.|+-.
T Consensus 26 RrHHCR~CG~v~C~ 39 (73)
T 1vfy_A 26 RKHHCRSCGGVFCQ 39 (73)
T ss_dssp CCEECTTTCCEECG
T ss_pred ccccCCCCCEEEcc
Confidence 46999999988743
No 382
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.18 E-value=8.7 Score=32.72 Aligned_cols=27 Identities=19% Similarity=0.562 Sum_probs=15.5
Q ss_pred cCCCCeeecCC---CCCCCCCCCCCCCC--CCC
Q 040420 81 CRDCGYIYNER---KPFDQLPDNYFCPV--CGA 108 (169)
Q Consensus 81 C~~CGyVYd~~---tpF~~lPd~~~CPv--Cga 108 (169)
...|||+|+.. .-|+. -..|.||+ |+.
T Consensus 197 s~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~ 228 (267)
T 3htk_C 197 SRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQ 228 (267)
T ss_dssp ESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSC
T ss_pred eCCCCCcccHHHHHHHHHh-CCCCCCCcccccC
Confidence 34566666651 11222 23489999 987
No 383
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=26.16 E-value=67 Score=21.80 Aligned_cols=23 Identities=26% Similarity=0.785 Sum_probs=17.8
Q ss_pred eEEcCCCCeeecCCCCCCCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLPDNYFCP 104 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lPd~~~CP 104 (169)
.|+|+ ||.+|-..+. .||+-.|+
T Consensus 29 ~f~Cr-Cg~~FC~~HR---y~e~H~C~ 51 (64)
T 1wfh_A 29 GFMCR-CGTTFCGSHR---YPEVHGCT 51 (64)
T ss_dssp CEECS-SSCEECTTTC---STTTTTCC
T ss_pred CEEee-cCCEeccccC---CcccCCCC
Confidence 69995 9999998765 46666675
No 384
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.12 E-value=26 Score=23.94 Aligned_cols=15 Identities=27% Similarity=0.720 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.|+-.
T Consensus 28 ~RrHHCR~CG~vfC~ 42 (84)
T 1x4u_A 28 KKRRSCSNCGNSFCS 42 (84)
T ss_dssp SCCEECSSSCCEECT
T ss_pred hhhhhhcCCCcEECh
Confidence 346999999988755
No 385
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=25.82 E-value=28 Score=24.48 Aligned_cols=10 Identities=50% Similarity=1.022 Sum_probs=8.0
Q ss_pred CCCCCCCCCc
Q 040420 101 YFCPVCGAPK 110 (169)
Q Consensus 101 ~~CPvCgapK 110 (169)
..||+|+.+-
T Consensus 56 ~~CP~Cr~~~ 65 (117)
T 1jm7_B 56 TGCPVCYTPA 65 (117)
T ss_dssp TBCSSSCCBC
T ss_pred CCCcCCCCcC
Confidence 3799999864
No 386
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=25.45 E-value=24 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=12.6
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
.++.|+|++|+.+-..
T Consensus 32 gkq~~kC~dC~~~cH~ 47 (61)
T 4b6d_A 32 GKLSLKCRDCRVVSHP 47 (61)
T ss_dssp TCEEEEESSSSCEECG
T ss_pred eeEeeECCCCCCeEch
Confidence 4578999999977544
No 387
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=25.36 E-value=26 Score=26.11 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=18.1
Q ss_pred CeEEcCCCCeeecCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNERKPFDQLPDNYFCPVCG 107 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~tpF~~lPd~~~CPvCg 107 (169)
-.|.|+.||.+|-..-.=...|..-+|-.|-
T Consensus 34 RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 34 RKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp GCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred ccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 3699999999997732111123334677773
No 388
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=25.23 E-value=15 Score=27.50 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=15.8
Q ss_pred eEEcCCCCeeecCCCCCCCCC--CCCCCCCCCC
Q 040420 78 AYICRDCGYIYNERKPFDQLP--DNYFCPVCGA 108 (169)
Q Consensus 78 ~y~C~~CGyVYd~~tpF~~lP--d~~~CPvCga 108 (169)
.|.|+ ||..|.-. -+++. ....|+.|.-
T Consensus 112 ~~~Cr-CG~~f~i~--~~~l~~~~~v~C~sCSl 141 (155)
T 2l6l_A 112 YLSCR-CGGKYSVS--KDEAEEVSLISCDTCSL 141 (155)
T ss_dssp EEECS-SSCEEEEE--TTHHHHCCEEECSSSSC
T ss_pred EEcCC-CCCeEEec--HHHhCCCCEEECCCCce
Confidence 45898 99555321 01222 3457999964
No 389
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.66 E-value=46 Score=20.40 Aligned_cols=15 Identities=27% Similarity=0.831 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCC
Q 040420 95 DQLPDNYFCPVCGAP 109 (169)
Q Consensus 95 ~~lPd~~~CPvCgap 109 (169)
+++.+++.||+|...
T Consensus 15 ~~~~~~~~C~IC~~~ 29 (63)
T 2ysj_A 15 NKLQEEVICPICLDI 29 (63)
T ss_dssp CCCCCCCBCTTTCSB
T ss_pred HhCccCCCCCcCCch
Confidence 456777889999753
No 390
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.64 E-value=32 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.497 Sum_probs=18.6
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-+|.+|+.+-. =|+..-....|.+|+.
T Consensus 35 VkCp~C~~~q~---VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 35 VKCPGCLNITT---VFSHAQTAVTCESCST 61 (82)
T ss_dssp EECTTSCSCEE---EESBCSSCCCCSSSCC
T ss_pred EECCCCCCeeE---EEecCCeEEEccccCC
Confidence 48999995532 2444445569999997
No 391
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.53 E-value=29 Score=23.60 Aligned_cols=15 Identities=33% Similarity=0.930 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.|+-.
T Consensus 33 ~RrHHCR~CG~v~C~ 47 (82)
T 2yw8_A 33 RRKHHCRNCGHIFCN 47 (82)
T ss_dssp BCCEECTTTCCEECS
T ss_pred cccccCCCCCCEECh
Confidence 346999999988865
No 392
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.38 E-value=26 Score=25.43 Aligned_cols=13 Identities=23% Similarity=0.491 Sum_probs=10.7
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
-++|..||.|++-
T Consensus 91 HliC~~Cg~v~~~ 103 (136)
T 1mzb_A 91 HMVCVDTGEVIEF 103 (136)
T ss_dssp EEEETTTCCEEEE
T ss_pred EEEECCCCCEEEe
Confidence 4699999998863
No 393
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=24.32 E-value=30 Score=25.79 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.5
Q ss_pred CCCeEEcCCCCeeecCC
Q 040420 75 SKQAYICRDCGYIYNER 91 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~ 91 (169)
....|+|..||+|.-++
T Consensus 51 ~~~Lw~CL~CG~vgCgr 67 (126)
T 2i50_A 51 KPSVWLCLKCGHQGCGR 67 (126)
T ss_dssp CCCEEEETTTCCEEECT
T ss_pred cccceeeeeCCccccCC
Confidence 46689999999996543
No 394
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=24.30 E-value=31 Score=20.96 Aligned_cols=15 Identities=33% Similarity=1.136 Sum_probs=12.8
Q ss_pred CeEEcCCCCeeecCC
Q 040420 77 QAYICRDCGYIYNER 91 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~ 91 (169)
+.|+|.+|++....+
T Consensus 26 qG~~C~~C~~~~H~~ 40 (52)
T 1faq_A 26 NGFRCQTCGYKFHEH 40 (52)
T ss_dssp SEEECTTTTCCBCST
T ss_pred cCCEeCCCCCeEChh
Confidence 789999999888764
No 395
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=24.26 E-value=27 Score=35.23 Aligned_cols=31 Identities=19% Similarity=0.479 Sum_probs=20.3
Q ss_pred CCCCeEEcCCCCee--ecCCCCCCCCCCCCCCCCCCCC
Q 040420 74 ASKQAYICRDCGYI--YNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 74 ~~~~~y~C~~CGyV--Yd~~tpF~~lPd~~~CPvCgap 109 (169)
+....|+|..||.+ |... .-..|.|++|+..
T Consensus 1156 D~~~~~vC~~cG~~~~~~~~-----~~~~~~c~~c~~~ 1188 (1224)
T 1twf_B 1156 DAFRVHICGICGLMTVIAKL-----NHNQFECKGCDNK 1188 (1224)
T ss_dssp CCCEEEEESSSCSSCCEEET-----TTTEEEBTTTTBS
T ss_pred ccceeEeeccCCCeeeeccc-----ccCceECCcCCCC
Confidence 34468999999976 3211 1234689999754
No 396
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=23.83 E-value=31 Score=27.96 Aligned_cols=41 Identities=10% Similarity=0.165 Sum_probs=23.5
Q ss_pred cceecCCCCeEEcCCCCeeecCCCCCCC-----CCCCCCCCCCCCC
Q 040420 69 FSMRVASKQAYICRDCGYIYNERKPFDQ-----LPDNYFCPVCGAP 109 (169)
Q Consensus 69 ~~~k~~~~~~y~C~~CGyVYd~~tpF~~-----lPd~~~CPvCgap 109 (169)
+.++.-+.=..+|+.||..+.=..-+.. .|....||.|++.
T Consensus 13 eRfr~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~ 58 (206)
T 3flo_B 13 ERFKDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQL 58 (206)
T ss_dssp TTTTTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCB
T ss_pred HHhCcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCc
Confidence 4444455557899999954321111111 2444679999883
No 397
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=23.83 E-value=32 Score=30.80 Aligned_cols=27 Identities=37% Similarity=1.129 Sum_probs=18.4
Q ss_pred CeEEcCCCCee--ecCCCCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYI--YNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyV--Yd~~tpF~~lPd~~~CPvCgap 109 (169)
+.|+|..||.+ ++.. -..+.|+.|+..
T Consensus 4 ~~~VC~~CG~~~~~~~~------~~~~~C~~C~~~ 32 (436)
T 3qqc_A 4 EVWVCENCGHIALEDKR------RRRVYCPVCGEE 32 (436)
T ss_dssp EEEEETTTCCBCEEETT------TTEEECTTTCCS
T ss_pred EEEEeCCCCceeeeccc------cCccCCCCCCCC
Confidence 47999999965 2211 123689999864
No 398
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.76 E-value=40 Score=24.28 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=18.9
Q ss_pred EEcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 79 y~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-+|.+|+.+-. -|+..--...|.+|+.
T Consensus 37 VkCp~C~~~~~---VFShA~t~V~C~~Cgt 63 (86)
T 3iz6_X 37 VKCQGCFNITT---VFSHSQTVVVCPGCQT 63 (86)
T ss_dssp EECTTTCCEEE---EETTCSSCCCCSSSCC
T ss_pred EECCCCCCeeE---EEecCCcEEEccCCCC
Confidence 48999996542 2444445569999997
No 399
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.75 E-value=45 Score=17.45 Aligned_cols=13 Identities=23% Similarity=1.027 Sum_probs=9.0
Q ss_pred eEEcC--CCCeeecC
Q 040420 78 AYICR--DCGYIYNE 90 (169)
Q Consensus 78 ~y~C~--~CGyVYd~ 90 (169)
.|+|. .||..|..
T Consensus 6 ~~~C~~~~C~k~f~~ 20 (38)
T 1bhi_A 6 PFLCTAPGCGQRFTN 20 (38)
T ss_dssp CEECCCTTTCCEESS
T ss_pred ceECCCCCCCcccCC
Confidence 48888 58877653
No 400
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=23.75 E-value=26 Score=27.95 Aligned_cols=23 Identities=30% Similarity=0.888 Sum_probs=14.9
Q ss_pred EEcCCCCe-----eecCCCCCCCCCCCCCCCCCCCC
Q 040420 79 YICRDCGY-----IYNERKPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 79 y~C~~CGy-----VYd~~tpF~~lPd~~~CPvCgap 109 (169)
-.|+.||- +|+. ..|.|=.||+.
T Consensus 15 ~~CP~Cg~~d~~~~~~d--------g~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLFSD--------GHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEETT--------SCEEETTTCCE
T ss_pred CcCCCCCCCCCceEeCC--------CCeecccCCCc
Confidence 37888873 3432 14788888874
No 401
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.58 E-value=37 Score=23.73 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=20.8
Q ss_pred CCeEEcCCCCeeecCC----------CCCCCCCCCCCCCCCCC
Q 040420 76 KQAYICRDCGYIYNER----------KPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~~----------tpF~~lPd~~~CPvCga 108 (169)
...|.|..||+.|... ..-..-...|.|+.||.
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk 58 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNF 58 (102)
T ss_dssp CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTE
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCc
Confidence 3469999999888651 11000112379999985
No 402
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.41 E-value=23 Score=17.87 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=9.0
Q ss_pred eEEcC--CCCeeecC
Q 040420 78 AYICR--DCGYIYNE 90 (169)
Q Consensus 78 ~y~C~--~CGyVYd~ 90 (169)
.|.|. .||..|..
T Consensus 3 ~~~C~~~~C~k~f~~ 17 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVR 17 (32)
T ss_dssp SBCCCCTTCCCCBSS
T ss_pred CCcCcCCCCCCccCC
Confidence 47888 78876643
No 403
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.24 E-value=21 Score=29.73 Aligned_cols=9 Identities=33% Similarity=1.150 Sum_probs=5.5
Q ss_pred CCCCCCCCC
Q 040420 99 DNYFCPVCG 107 (169)
Q Consensus 99 d~~~CPvCg 107 (169)
..|.||.|.
T Consensus 264 ~t~~CP~CQ 272 (273)
T 3u6p_A 264 GTHYCPRCQ 272 (273)
T ss_dssp EEEECTTTC
T ss_pred CeEECCCCC
Confidence 346677774
No 404
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=23.14 E-value=26 Score=29.03 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=14.8
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
-|+.||..-... .+.. -..|.||.|..
T Consensus 237 pC~~CG~~I~~~-~~~g-R~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRPVERR-VVAG-RGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCBCEEE-ESSS-CEEEECTTTTT
T ss_pred CCCCCCCEeeEE-EECC-CceEECCCCCC
Confidence 388888543321 1111 34578888864
No 405
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.10 E-value=32 Score=23.48 Aligned_cols=15 Identities=33% Similarity=0.879 Sum_probs=11.7
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.|+-.
T Consensus 35 ~RrHHCR~CG~v~C~ 49 (84)
T 1z2q_A 35 VRRHHCRNCGYVLCG 49 (84)
T ss_dssp SCCEECTTTCCEECT
T ss_pred hhcccccCCCcEECh
Confidence 346999999988754
No 406
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=23.07 E-value=37 Score=22.50 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=6.0
Q ss_pred eEEcCCCCee
Q 040420 78 AYICRDCGYI 87 (169)
Q Consensus 78 ~y~C~~CGyV 87 (169)
.|+|..|+.+
T Consensus 30 ~y~C~~C~~~ 39 (59)
T 1z60_A 30 VYVCAVCQNV 39 (59)
T ss_dssp EECCTTTTCC
T ss_pred cEECCccCcC
Confidence 4667776633
No 407
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=22.82 E-value=51 Score=24.72 Aligned_cols=12 Identities=17% Similarity=0.254 Sum_probs=8.7
Q ss_pred CCeEEcCCCCee
Q 040420 76 KQAYICRDCGYI 87 (169)
Q Consensus 76 ~~~y~C~~CGyV 87 (169)
...|+|..||+|
T Consensus 44 ~~LwlCL~CG~v 55 (129)
T 2g45_A 44 ENLWLNLTDGSI 55 (129)
T ss_dssp SSEEEETTTCCE
T ss_pred CceEEeccCCcc
Confidence 357788888776
No 408
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=22.29 E-value=42 Score=22.58 Aligned_cols=15 Identities=20% Similarity=0.680 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
...|+|..||..|..
T Consensus 23 ~kpy~C~~C~k~F~~ 37 (88)
T 1x6f_A 23 NSTYQCKHCDSKLQS 37 (88)
T ss_dssp CSCEECSSSCCEESS
T ss_pred CCCCcCCCCCCEeCC
Confidence 346999999998876
No 409
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=22.26 E-value=41 Score=22.58 Aligned_cols=16 Identities=38% Similarity=0.852 Sum_probs=13.2
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
..+.|+|.+|++..-.
T Consensus 48 ~kqG~~C~~C~~~~Hk 63 (77)
T 2enn_A 48 NKQGYQCRQCNAAIHK 63 (77)
T ss_dssp TCCEEECSSSCCEEES
T ss_pred cccccCcCCCCCcCCH
Confidence 4578999999988765
No 410
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=22.22 E-value=23 Score=33.59 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=23.4
Q ss_pred CeEEcCC--CCeeecCCCCCCCCCCCCCCCCCCCCc
Q 040420 77 QAYICRD--CGYIYNERKPFDQLPDNYFCPVCGAPK 110 (169)
Q Consensus 77 ~~y~C~~--CGyVYd~~tpF~~lPd~~~CPvCgapK 110 (169)
+.-+|+. |+-..++=..|++--..|+|+.|+..-
T Consensus 61 ~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~~~N 96 (769)
T 2nut_A 61 EPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 96 (769)
T ss_dssp CCCBCSSTTCCCBCCTTSEEETTTTEEECSSSCCEE
T ss_pred CCCcCCCCCCCeEECCceEEeCCCCEEEccCCCCCC
Confidence 4679998 996666544444434579999998743
No 411
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.05 E-value=38 Score=22.92 Aligned_cols=17 Identities=35% Similarity=0.851 Sum_probs=13.7
Q ss_pred CCCeEEcCCCCeeecCC
Q 040420 75 SKQAYICRDCGYIYNER 91 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~~ 91 (169)
.++.|+|.+|+++.-..
T Consensus 42 ~kqg~~C~~C~~~~Hk~ 58 (83)
T 2yuu_A 42 NKQGYKCRQCNAAIHKK 58 (83)
T ss_dssp SCCEEEETTTCCEECTT
T ss_pred cccccccCCcCCeeChh
Confidence 35789999999887653
No 412
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=21.97 E-value=32 Score=24.48 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=18.6
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCga 108 (169)
+|.+|+.+-. =|+..-....|.+|+.
T Consensus 34 kCp~C~n~q~---VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 34 KCAQCQNIQM---IFSNAQSTIICEKCSA 59 (81)
T ss_dssp ECSSSCCEEE---EETTCSSCEECSSSCC
T ss_pred ECCCCCCeeE---EEecCccEEEccCCCC
Confidence 9999996542 2444455569999997
No 413
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=21.88 E-value=11 Score=26.18 Aligned_cols=11 Identities=27% Similarity=1.078 Sum_probs=8.5
Q ss_pred CCCCCCCCCcc
Q 040420 101 YFCPVCGAPKR 111 (169)
Q Consensus 101 ~~CPvCgapK~ 111 (169)
..||+|+..-.
T Consensus 51 ~~CP~Cr~~~~ 61 (108)
T 2ckl_A 51 KYCPICDVQVH 61 (108)
T ss_dssp SBCTTTCCBSC
T ss_pred CcCcCCCcccc
Confidence 48999998643
No 414
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.78 E-value=43 Score=21.27 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCc
Q 040420 95 DQLPDNYFCPVCGAPK 110 (169)
Q Consensus 95 ~~lPd~~~CPvCgapK 110 (169)
+++.+++.||+|...-
T Consensus 14 ~~~~~~~~C~IC~~~~ 29 (85)
T 2ecv_A 14 VNVKEEVTCPICLELL 29 (85)
T ss_dssp CCCCCCCCCTTTCSCC
T ss_pred HHccCCCCCCCCCccc
Confidence 4566778899997643
No 415
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.75 E-value=23 Score=29.15 Aligned_cols=26 Identities=31% Similarity=0.848 Sum_probs=12.0
Q ss_pred EcCCCCeeecCCCCCCCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFDQLPDNYFCPVCG 107 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~~lPd~~~CPvCg 107 (169)
-|+.||..-... .+.. -..|.||.|.
T Consensus 236 pC~~CG~~I~~~-~~~g-R~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKT-TLSS-RPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEE-EETT-EEEEECTTTC
T ss_pred CCCCCCCEeEEE-EECC-CCeEECCCCC
Confidence 377777432211 0111 2446777774
No 416
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.75 E-value=37 Score=23.60 Aligned_cols=15 Identities=33% Similarity=0.979 Sum_probs=12.1
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.|+-.
T Consensus 23 ~RrHHCR~CG~vfC~ 37 (88)
T 1wfk_A 23 KKEYGCKNCGRAFCN 37 (88)
T ss_dssp SCEEECSSSCCEEET
T ss_pred cccccCCCCCCEECh
Confidence 346999999988865
No 417
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=42 Score=20.99 Aligned_cols=16 Identities=25% Similarity=0.735 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCCc
Q 040420 95 DQLPDNYFCPVCGAPK 110 (169)
Q Consensus 95 ~~lPd~~~CPvCgapK 110 (169)
+++.+++.||+|...-
T Consensus 15 ~~~~~~~~C~IC~~~~ 30 (73)
T 2ysl_A 15 NKLQEEVICPICLDIL 30 (73)
T ss_dssp CCCCCCCBCTTTCSBC
T ss_pred HhCccCCEeccCCccc
Confidence 4567778999997643
No 418
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=21.58 E-value=59 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.966 Sum_probs=4.4
Q ss_pred CCCCCCCCCC
Q 040420 98 PDNYFCPVCG 107 (169)
Q Consensus 98 Pd~~~CPvCg 107 (169)
.+++.||+|.
T Consensus 17 ~~~~~C~IC~ 26 (85)
T 2ecw_A 17 KEEVTCPICL 26 (85)
T ss_dssp CTTTSCTTTC
T ss_pred ccCCCCcCCC
Confidence 3344444443
No 419
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.47 E-value=47 Score=27.04 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=18.4
Q ss_pred CeEEcCCCCeeecCC---CCCCCCCCCCCCCCCCCC
Q 040420 77 QAYICRDCGYIYNER---KPFDQLPDNYFCPVCGAP 109 (169)
Q Consensus 77 ~~y~C~~CGyVYd~~---tpF~~lPd~~~CPvCgap 109 (169)
...+|..|+..+... .-|... .+-.||.|+.+
T Consensus 192 ~g~~C~~C~~~~H~~C~~~~~~~~-~~~~CP~C~~~ 226 (238)
T 3nw0_A 192 QGQSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDY 226 (238)
T ss_dssp SCEECSSSCCEECHHHHHHHTTTC-SSCBCTTTCCB
T ss_pred CCcccCccChHHHHHHHHHHHHhC-CCCCCCCCCCC
Confidence 357788888665541 112221 23489999885
No 420
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=21.43 E-value=35 Score=25.15 Aligned_cols=15 Identities=33% Similarity=0.798 Sum_probs=11.7
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.|+-.
T Consensus 83 ~RrHHCR~CG~vfC~ 97 (125)
T 1joc_A 83 VRRHHCRQCGNIFCA 97 (125)
T ss_dssp SCCEECTTTCCEECG
T ss_pred cccccCCCCCeEECh
Confidence 347999999988754
No 421
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=21.35 E-value=31 Score=27.25 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=10.9
Q ss_pred CCCCCCCCCCCCCCC
Q 040420 95 DQLPDNYFCPVCGAP 109 (169)
Q Consensus 95 ~~lPd~~~CPvCgap 109 (169)
.++|+.+.||+|+..
T Consensus 101 ~~ip~~f~CPI~~el 115 (179)
T 2f42_A 101 REIPDYLCGKISFEL 115 (179)
T ss_dssp CCCCGGGBCTTTCSB
T ss_pred cCCcHhhcccCcccc
Confidence 356888888888763
No 422
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=21.24 E-value=32 Score=25.36 Aligned_cols=14 Identities=29% Similarity=0.800 Sum_probs=11.1
Q ss_pred CeEEcCCCCeeecC
Q 040420 77 QAYICRDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C~~CGyVYd~ 90 (169)
.-++|..||.|++-
T Consensus 89 ~HliC~~Cg~v~~~ 102 (145)
T 3eyy_A 89 IHLVCRDCTNVIEA 102 (145)
T ss_dssp EEEEESSSSCEEEE
T ss_pred eEEEECCCCCEEEe
Confidence 34699999998864
No 423
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=21.24 E-value=34 Score=26.97 Aligned_cols=15 Identities=27% Similarity=0.842 Sum_probs=11.5
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
.-.|.|+.||.++-.
T Consensus 175 ~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 175 NRKHHCRNCGQVFCG 189 (220)
T ss_dssp SCCEECTTTCCEECS
T ss_pred ccccccCCcCCEECh
Confidence 347999999987743
No 424
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=21.20 E-value=43 Score=21.52 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=12.6
Q ss_pred CCCeEEcCCCCeeecC
Q 040420 75 SKQAYICRDCGYIYNE 90 (169)
Q Consensus 75 ~~~~y~C~~CGyVYd~ 90 (169)
..+.|+|.+|++..-.
T Consensus 34 ~~qg~~C~~C~~~~Hk 49 (65)
T 3uej_A 34 VKQGLKCEDCGMNVHH 49 (65)
T ss_dssp SSCEEEETTTCCEECH
T ss_pred CceeeECCCCCCeEch
Confidence 4578999999988654
No 425
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.05 E-value=38 Score=22.75 Aligned_cols=8 Identities=50% Similarity=1.202 Sum_probs=6.6
Q ss_pred CCCCCCCC
Q 040420 102 FCPVCGAP 109 (169)
Q Consensus 102 ~CPvCgap 109 (169)
.||+|+.+
T Consensus 79 ~CP~Cr~~ 86 (91)
T 2l0b_A 79 TCPVCRCM 86 (91)
T ss_dssp BCTTTCCB
T ss_pred cCcCcCcc
Confidence 89999864
No 426
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.95 E-value=24 Score=29.14 Aligned_cols=9 Identities=22% Similarity=1.110 Sum_probs=5.0
Q ss_pred CCCCCCCCC
Q 040420 99 DNYFCPVCG 107 (169)
Q Consensus 99 d~~~CPvCg 107 (169)
..|.||.|.
T Consensus 259 ~t~~CP~CQ 267 (268)
T 1k82_A 259 ATFYCRQCQ 267 (268)
T ss_dssp EEEECTTTC
T ss_pred ceEECCCCC
Confidence 345666664
No 427
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=20.73 E-value=66 Score=23.31 Aligned_cols=14 Identities=29% Similarity=1.070 Sum_probs=10.0
Q ss_pred CeEEc--CCCCeeecC
Q 040420 77 QAYIC--RDCGYIYNE 90 (169)
Q Consensus 77 ~~y~C--~~CGyVYd~ 90 (169)
..|+| ..||..|..
T Consensus 103 ~~~~C~~~~C~k~f~~ 118 (190)
T 1tf6_A 103 CVYVCHFENCGKAFKK 118 (190)
T ss_dssp SCCEECSSSSCEECSS
T ss_pred ceeeCCCCCCccccCC
Confidence 35788 778877765
No 428
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=20.67 E-value=28 Score=29.62 Aligned_cols=28 Identities=29% Similarity=0.649 Sum_probs=17.7
Q ss_pred EcCCCCeeecCCCCCC-CCCCCCCCCCCCC
Q 040420 80 ICRDCGYIYNERKPFD-QLPDNYFCPVCGA 108 (169)
Q Consensus 80 ~C~~CGyVYd~~tpF~-~lPd~~~CPvCga 108 (169)
.|+.||..-... .+. .--..|.||.|..
T Consensus 253 pC~~CGt~I~~~-~~g~~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 253 NCDQCHSKITVC-RFGENSRMTYFCPHCQK 281 (287)
T ss_dssp BCTTTCCBCEEE-CSSTTCCCEEECTTTSC
T ss_pred CCCCCCCEEEEE-EecCCCCCEEECCCccc
Confidence 799999544321 222 1256799999964
No 429
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=20.64 E-value=25 Score=29.13 Aligned_cols=25 Identities=32% Similarity=0.782 Sum_probs=11.9
Q ss_pred cCCCCeeecCCCCCCCCCCCCCCCCCC
Q 040420 81 CRDCGYIYNERKPFDQLPDNYFCPVCG 107 (169)
Q Consensus 81 C~~CGyVYd~~tpF~~lPd~~~CPvCg 107 (169)
|+.||..-... .+.. -..|.||.|.
T Consensus 245 C~~CG~~I~~~-~~~g-R~t~~CP~CQ 269 (271)
T 2xzf_A 245 CSRCGAEIQKI-KVAG-RGTHFCPVCQ 269 (271)
T ss_dssp CTTTCCBCEEE-EETT-EEEEECTTTS
T ss_pred CCCCCCEeeEE-EECC-CceEECCCCC
Confidence 77777433221 0111 2446777775
No 430
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=20.58 E-value=37 Score=22.00 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=12.3
Q ss_pred CCeEEcCCCCeeecC
Q 040420 76 KQAYICRDCGYIYNE 90 (169)
Q Consensus 76 ~~~y~C~~CGyVYd~ 90 (169)
++.|+|.+|++..-.
T Consensus 39 ~qg~~C~~C~~~~Hk 53 (66)
T 1y8f_A 39 RQGMRCTECGVKCHE 53 (66)
T ss_dssp CEEEEETTTCCEECT
T ss_pred cceeEcCCCCCeeCH
Confidence 468999999988754
No 431
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.51 E-value=34 Score=25.09 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=10.9
Q ss_pred eEEcCCCCeeecC
Q 040420 78 AYICRDCGYIYNE 90 (169)
Q Consensus 78 ~y~C~~CGyVYd~ 90 (169)
-++|..||.|++-
T Consensus 93 HliC~~Cg~v~~~ 105 (145)
T 2fe3_A 93 HAICENCGKIVDF 105 (145)
T ss_dssp EEEETTTCCEEEC
T ss_pred eEEECCCCCEEEe
Confidence 4699999999874
Done!