BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040421
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 604 bits (1557), Expect = e-173, Method: Compositional matrix adjust.
Identities = 280/397 (70%), Positives = 328/397 (82%), Gaps = 1/397 (0%)
Query: 1 VHITQGDHEGKGVIVSWVTP-DEPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIH 59
VHITQGD+EG+GVI+SW TP D+ G+N V YW+ENS +++A G V+TY Y+NYTS IH
Sbjct: 28 VHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYTSAFIH 87
Query: 60 HCTIEDLEFDTKYYYEVGVGNATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTH 119
HCTI+DLE+DTKYYY +G G+A RQF F TPP GPDVPY FGLIGD+GQT+ SN TLTH
Sbjct: 88 HCTIKDLEYDTKYYYRLGFGDAKRQFWFVTPPKPGPDVPYVFGLIGDIGQTHDSNTTLTH 147
Query: 120 YELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAP 179
YE N KGQ VLF+GDLSY++ +P HDNNRWDTWGRF ER+ AYQPWIWT GNHEID+AP
Sbjct: 148 YEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAP 207
Query: 180 QLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEK 239
+GE PF PF NR+ P+ A S P WY+I+RASAHIIV+S YS F KY+PQYKW
Sbjct: 208 DIGEYQPFVPFTNRYPTPHEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTS 267
Query: 240 EFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299
E KVNRSETPWLIVL+H PLYNSY HYMEGE MR ++EP+FV YKVD+VF+ HVH+YE
Sbjct: 268 ELEKVNRSETPWLIVLVHAPLYNSYEAHYMEGEAMRAIFEPYFVYYKVDIVFSGHVHSYE 327
Query: 300 RSERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFG 359
RSER+SN+AYN+ NA C+PVSD+SAPVYITIGDGGN EGLA EMT+PQP YSA+REASFG
Sbjct: 328 RSERVSNVAYNIVNAKCTPVSDESAPVYITIGDGGNSEGLASEMTQPQPSYSAFREASFG 387
Query: 360 HGILDVKNRTHAYFGWHRNQDDYAVEADSVWLHNRYW 396
HGI D+KNRTHA+F WHRNQD +VEADS+WL NRYW
Sbjct: 388 HGIFDIKNRTHAHFSWHRNQDGASVEADSLWLLNRYW 424
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 599 bits (1545), Expect = e-172, Method: Compositional matrix adjust.
Identities = 279/398 (70%), Positives = 325/398 (81%)
Query: 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHH 60
VHITQGD G+ +I+SWVT DEPGS+ V YW+E + K+ A G + TY +FNY+S IHH
Sbjct: 24 VHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHH 83
Query: 61 CTIEDLEFDTKYYYEVGVGNATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHY 120
TI L+++TKYYYEVG+ N TR+FSF TPP G DVPYTFGLIGDLGQ++ SN TL+HY
Sbjct: 84 TTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHY 143
Query: 121 ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQ 180
EL+P KGQTVLFVGDLSYAD YP HDN RWDTWGRF ER+ AYQPWIWT GNHEI+FAP+
Sbjct: 144 ELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPE 203
Query: 181 LGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKE 240
+ E PFKPF+ R+H+PY A ST+PFWYSI+RASAHIIV+S YSA+G+ TPQY WL+KE
Sbjct: 204 INETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKE 263
Query: 241 FPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300
KV RSETPWLIVLMH PLYNSY HH+MEGE MR +E WFV+YKVDVVFA HVHAYER
Sbjct: 264 LRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYER 323
Query: 301 SERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGH 360
SER+SNIAY +TN LC+PV DQSAPVYITIGD GN + M +PQP YSA+REASFGH
Sbjct: 324 SERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGH 383
Query: 361 GILDVKNRTHAYFGWHRNQDDYAVEADSVWLHNRYWKP 398
G+ D+KNRTHA+F W+RNQD AVEADSVW NR+W P
Sbjct: 384 GMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYP 421
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 598 bits (1543), Expect = e-171, Method: Compositional matrix adjust.
Identities = 279/398 (70%), Positives = 325/398 (81%)
Query: 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHH 60
VHITQGD G+ +I+SWVT DEPGS+ V YW+E + K+ A G + TY +FNY+S IHH
Sbjct: 22 VHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHH 81
Query: 61 CTIEDLEFDTKYYYEVGVGNATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHY 120
TI L+++TKYYYEVG+ N TR+FSF TPP G DVPYTFGLIGDLGQ++ SN TL+HY
Sbjct: 82 TTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHY 141
Query: 121 ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQ 180
EL+P KGQTVLFVGDLSYAD YP HDN RWDTWGRF ER+ AYQPWIWT GNHEI+FAP+
Sbjct: 142 ELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPE 201
Query: 181 LGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKE 240
+ E PFKPF+ R+H+PY A ST+PFWYSI+RASAHIIV+S YSA+G+ TPQY WL+KE
Sbjct: 202 INETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKE 261
Query: 241 FPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300
KV RSETPWLIVLMH PLYNSY HH+MEGE MR +E WFV+YKVDVVFA HVHAYER
Sbjct: 262 LRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYER 321
Query: 301 SERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGH 360
SER+SNIAY +TN LC+PV DQSAPVYITIGD GN + M +PQP YSA+REASFGH
Sbjct: 322 SERVSNIAYKITNGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGH 381
Query: 361 GILDVKNRTHAYFGWHRNQDDYAVEADSVWLHNRYWKP 398
G+ D+KNRTHA+F W+RNQD AVEADSVW NR+W P
Sbjct: 382 GMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYP 419
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 598 bits (1541), Expect = e-171, Method: Compositional matrix adjust.
Identities = 278/398 (69%), Positives = 325/398 (81%)
Query: 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHH 60
VHITQGD G+ +I+SWVT DEPGS+ V YW+E + K+ A G + TY +FNY+S IHH
Sbjct: 30 VHITQGDLVGRAMIISWVTMDEPGSSAVRYWSEKNGRKRIAKGKMSTYRFFNYSSGFIHH 89
Query: 61 CTIEDLEFDTKYYYEVGVGNATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHY 120
TI L+++TKYYYEVG+ N TR+FSF TPP G DVPYTFGLIGDLGQ++ SN TL+HY
Sbjct: 90 TTIRKLKYNTKYYYEVGLRNTTRRFSFITPPQTGLDVPYTFGLIGDLGQSFDSNTTLSHY 149
Query: 121 ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQ 180
EL+P KGQTVLFVGDLSYAD YP HDN RWDTWGRF ER+ AYQPWIWT GNHEI+FAP+
Sbjct: 150 ELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPE 209
Query: 181 LGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKE 240
+ E PFKPF+ R+H+PY A ST+PFWYSI+RASAHIIV+S YSA+G+ TPQY WL+KE
Sbjct: 210 INETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYGRGTPQYTWLKKE 269
Query: 241 FPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300
KV RSETPWLIVLMH PLYNSY HH+MEGE MR +E WFV+YKVDVVFA HVHAYER
Sbjct: 270 LRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYER 329
Query: 301 SERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGH 360
SER+SNIAY +T+ LC+PV DQSAPVYITIGD GN + M +PQP YSA+REASFGH
Sbjct: 330 SERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGH 389
Query: 361 GILDVKNRTHAYFGWHRNQDDYAVEADSVWLHNRYWKP 398
G+ D+KNRTHA+F W+RNQD AVEADSVW NR+W P
Sbjct: 390 GMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYP 427
>pdb|2GKP|A Chain A, Protein Of Unknown Function Nmb0488 From Neisseria
Meningitidis
Length = 167
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 213 RASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYV------H 266
+A+ +++ +S FG+Y P + + P +ET VL ++V
Sbjct: 17 KANERALIIQTWSGFGRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQ 76
Query: 267 HYMEGEPMRVLYEPWFVE 284
+ + E +R YE W +
Sbjct: 77 DFFDTEKIRQRYEDWVAK 94
>pdb|1X5K|A Chain A, The Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Neogenin
Length = 124
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 12/103 (11%)
Query: 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENST-LKQQAHGIVLTYNYFNYTSNCIH 59
V + + + K +IV+W P E Y ST + + H V+ N +
Sbjct: 25 VTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIE----PVVGNRLT 80
Query: 60 HCTIEDLEFDTKYYYEV------GVGNATRQFSFTTPPGVGPD 96
H I++L DT YY+++ G+G + F TP GP
Sbjct: 81 H-QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKASGPS 122
>pdb|3DWA|A Chain A, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli
pdb|3DWA|B Chain B, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli
pdb|3DWA|C Chain C, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli
pdb|3DWA|D Chain D, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli
pdb|3DWA|E Chain E, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli
Length = 126
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 260 LYNSYVHHYMEGEPMRVLYEP 280
LYN ++ Y G+P+R+ YEP
Sbjct: 60 LYNQALYFYTTGQPVRIYYEP 80
>pdb|3DWP|A Chain A, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc
pdb|3DWP|B Chain B, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc
pdb|3DWP|C Chain C, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc
pdb|3DWP|D Chain D, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc
pdb|3DWP|E Chain E, Crystal Structure Of The B-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc
pdb|3DWQ|A Chain A, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc-2,3gal-1,3glcnac
pdb|3DWQ|B Chain B, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc-2,3gal-1,3glcnac
pdb|3DWQ|C Chain C, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc-2,3gal-1,3glcnac
pdb|3DWQ|D Chain D, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc-2,3gal-1,3glcnac
pdb|3DWQ|E Chain E, Crystal Structure Of The A-Subunit Of The Ab5 Toxin From
E. Coli With Neu5gc-2,3gal-1,3glcnac
Length = 126
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 260 LYNSYVHHYMEGEPMRVLYEP 280
LYN ++ Y G+P+R+ YEP
Sbjct: 60 LYNQALYFYTTGQPVRIYYEP 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,643,716
Number of Sequences: 62578
Number of extensions: 673434
Number of successful extensions: 1746
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1737
Number of HSP's gapped (non-prelim): 13
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)