Query 040421
Match_columns 407
No_of_seqs 325 out of 2843
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 2.2E-76 4.9E-81 556.0 38.8 388 1-402 48-446 (452)
2 PLN02533 probable purple acid 100.0 2.6E-73 5.5E-78 555.1 42.9 374 1-398 47-423 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 5.7E-49 1.2E-53 370.9 30.7 287 96-393 2-294 (294)
4 PTZ00422 glideosome-associated 100.0 9.5E-39 2.1E-43 301.7 25.8 259 96-395 24-331 (394)
5 cd07378 MPP_ACP5 Homo sapiens 100.0 4.2E-35 9.1E-40 274.0 23.4 248 99-381 1-277 (277)
6 KOG2679 Purple (tartrate-resis 100.0 2.1E-32 4.5E-37 238.4 19.1 262 95-394 40-330 (336)
7 cd07395 MPP_CSTP1 Homo sapiens 100.0 8E-29 1.7E-33 229.6 20.1 231 97-376 3-260 (262)
8 PF09423 PhoD: PhoD-like phosp 99.9 2.9E-26 6.3E-31 228.2 24.2 288 3-302 3-381 (453)
9 cd07402 MPP_GpdQ Enterobacter 99.9 3.6E-25 7.9E-30 202.5 18.1 219 100-368 1-238 (240)
10 cd07396 MPP_Nbla03831 Homo sap 99.9 3E-24 6.6E-29 199.0 17.9 197 99-335 1-246 (267)
11 PRK11148 cyclic 3',5'-adenosin 99.9 2.4E-22 5.2E-27 187.2 21.5 238 87-378 5-261 (275)
12 COG3540 PhoD Phosphodiesterase 99.9 2.3E-22 4.9E-27 189.1 16.2 283 3-299 43-419 (522)
13 cd07401 MPP_TMEM62_N Homo sapi 99.9 4.9E-22 1.1E-26 182.8 16.9 190 101-304 2-216 (256)
14 cd07399 MPP_YvnB Bacillus subt 99.9 6.3E-21 1.4E-25 170.7 13.6 151 99-302 1-165 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 1.7E-19 3.8E-24 170.1 12.1 195 103-301 42-264 (296)
16 cd08163 MPP_Cdc1 Saccharomyces 99.8 1E-17 2.2E-22 153.3 13.0 168 119-302 39-232 (257)
17 PF00149 Metallophos: Calcineu 99.7 6.4E-19 1.4E-23 151.9 3.5 190 99-298 1-200 (200)
18 cd07383 MPP_Dcr2 Saccharomyces 99.7 1.8E-16 3.8E-21 140.7 13.8 151 98-302 2-180 (199)
19 cd07393 MPP_DR1119 Deinococcus 99.7 1.7E-16 3.7E-21 144.0 11.9 168 126-333 41-226 (232)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.7 1.2E-15 2.7E-20 133.9 14.0 167 101-299 1-174 (188)
21 TIGR03767 P_acnes_RR metalloph 99.7 1.4E-15 3.1E-20 146.6 15.1 94 205-301 290-395 (496)
22 TIGR03729 acc_ester putative p 99.6 4.3E-15 9.4E-20 135.6 14.7 176 100-299 1-222 (239)
23 cd07385 MPP_YkuE_C Bacillus su 99.6 1.1E-14 2.4E-19 131.5 12.1 198 98-335 1-206 (223)
24 cd07400 MPP_YydB Bacillus subt 99.6 2.1E-14 4.5E-19 120.6 12.1 117 101-301 1-128 (144)
25 cd07404 MPP_MS158 Microscilla 99.6 4.1E-14 8.8E-19 121.8 12.5 145 101-299 1-150 (166)
26 COG1409 Icc Predicted phosphoh 99.5 1.4E-13 3.1E-18 129.7 15.2 180 99-298 1-193 (301)
27 TIGR03768 RPA4764 metallophosp 99.5 2.2E-13 4.8E-18 130.1 14.5 92 205-297 291-410 (492)
28 cd00840 MPP_Mre11_N Mre11 nucl 99.5 2.6E-13 5.7E-18 122.5 13.4 188 100-301 1-204 (223)
29 cd07388 MPP_Tt1561 Thermus the 99.5 5.9E-13 1.3E-17 118.8 15.0 175 97-296 3-189 (224)
30 PRK11340 phosphodiesterase Yae 99.5 1.2E-12 2.6E-17 121.6 14.8 168 96-304 47-220 (271)
31 PF14008 Metallophos_C: Iron/z 99.4 2.3E-13 5.1E-18 96.0 6.8 62 323-389 1-62 (62)
32 cd00838 MPP_superfamily metall 99.4 7.7E-12 1.7E-16 102.2 12.2 117 102-302 1-119 (131)
33 KOG1432 Predicted DNA repair e 99.4 1.8E-10 3.9E-15 105.1 21.6 196 96-301 51-314 (379)
34 PF12850 Metallophos_2: Calcin 99.3 1.6E-11 3.6E-16 104.2 10.6 154 99-367 1-155 (156)
35 cd07379 MPP_239FB Homo sapiens 99.2 1.1E-10 2.5E-15 96.7 11.4 117 100-299 1-117 (135)
36 COG1408 Predicted phosphohydro 99.2 1.3E-10 2.8E-15 107.7 12.8 84 86-176 32-118 (284)
37 PRK05340 UDP-2,3-diacylglucosa 99.1 3.8E-10 8.1E-15 103.1 9.7 177 99-300 1-201 (241)
38 cd08166 MPP_Cdc1_like_1 unchar 99.1 3.3E-10 7.2E-15 98.2 8.5 108 125-302 41-151 (195)
39 cd07389 MPP_PhoD Bacillus subt 99.1 2.5E-09 5.4E-14 96.9 14.3 164 100-302 1-208 (228)
40 cd07397 MPP_DevT Myxococcus xa 99.1 4.1E-09 8.8E-14 94.5 15.0 64 99-177 1-64 (238)
41 cd00841 MPP_YfcE Escherichia c 99.1 1.4E-09 3.1E-14 92.3 11.4 58 100-175 1-58 (155)
42 cd07394 MPP_Vps29 Homo sapiens 99.0 7.6E-08 1.7E-12 83.4 19.9 61 100-175 1-64 (178)
43 TIGR00040 yfcE phosphoesterase 99.0 9.6E-09 2.1E-13 87.5 13.8 63 99-175 1-63 (158)
44 COG1768 Predicted phosphohydro 99.0 6.7E-09 1.4E-13 86.3 12.1 157 118-302 35-203 (230)
45 cd07403 MPP_TTHA0053 Thermus t 99.0 2.7E-09 5.8E-14 87.6 8.8 50 252-302 58-107 (129)
46 cd08165 MPP_MPPE1 human MPPE1 99.0 2E-09 4.3E-14 91.3 8.2 54 120-176 33-89 (156)
47 cd07384 MPP_Cdc1_like Saccharo 99.0 1.4E-09 3.1E-14 93.6 7.2 56 118-176 38-100 (171)
48 COG2129 Predicted phosphoester 99.0 2.5E-08 5.5E-13 86.8 14.6 179 98-302 3-191 (226)
49 PF14582 Metallophos_3: Metall 98.9 6.9E-09 1.5E-13 90.0 9.9 179 98-299 5-219 (255)
50 TIGR01854 lipid_A_lpxH UDP-2,3 98.9 2.4E-08 5.3E-13 90.6 13.3 75 102-176 2-81 (231)
51 TIGR00583 mre11 DNA repair pro 98.9 1.6E-07 3.4E-12 91.3 18.6 44 97-141 2-57 (405)
52 PRK09453 phosphodiesterase; Pr 98.8 3.7E-07 8.1E-12 79.6 16.0 74 99-176 1-76 (182)
53 cd00845 MPP_UshA_N_like Escher 98.7 7.7E-08 1.7E-12 88.5 11.1 175 99-300 1-208 (252)
54 KOG3770 Acid sphingomyelinase 98.7 5.8E-08 1.3E-12 95.6 10.2 179 115-299 199-405 (577)
55 cd08164 MPP_Ted1 Saccharomyces 98.7 6E-08 1.3E-12 84.0 7.7 56 118-177 37-112 (193)
56 cd07398 MPP_YbbF-LpxH Escheric 98.6 7.4E-08 1.6E-12 86.5 7.6 182 102-301 1-204 (217)
57 cd07406 MPP_CG11883_N Drosophi 98.6 5.1E-07 1.1E-11 83.3 12.4 174 99-299 1-208 (257)
58 cd07410 MPP_CpdB_N Escherichia 98.6 1.2E-06 2.7E-11 81.7 13.8 59 234-299 172-231 (277)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.5 1.7E-06 3.8E-11 79.4 13.1 183 101-303 1-234 (262)
60 COG0420 SbcD DNA repair exonuc 98.5 5E-07 1.1E-11 88.6 8.9 73 99-176 1-88 (390)
61 COG0622 Predicted phosphoester 98.4 1.7E-05 3.7E-10 67.9 15.7 64 99-176 2-65 (172)
62 cd07408 MPP_SA0022_N Staphyloc 98.3 5E-06 1.1E-10 76.7 10.8 181 99-301 1-216 (257)
63 cd07382 MPP_DR1281 Deinococcus 98.3 2.8E-05 6.1E-10 71.0 15.5 170 100-299 1-179 (255)
64 cd07412 MPP_YhcR_N Bacillus su 98.3 9.6E-06 2.1E-10 76.0 12.6 52 247-300 190-243 (288)
65 cd07411 MPP_SoxB_N Thermus the 98.3 3.6E-06 7.7E-11 78.0 8.6 147 126-299 50-220 (264)
66 cd07407 MPP_YHR202W_N Saccharo 98.3 0.0001 2.3E-09 68.6 18.3 185 97-298 4-231 (282)
67 cd07409 MPP_CD73_N CD73 ecto-5 98.2 1.1E-05 2.3E-10 75.5 11.4 78 207-299 131-219 (281)
68 TIGR00619 sbcd exonuclease Sbc 98.2 3.4E-06 7.3E-11 77.5 7.2 74 99-176 1-88 (253)
69 PRK04036 DNA polymerase II sma 98.2 1.7E-05 3.8E-10 79.9 12.7 81 96-176 241-343 (504)
70 KOG3662 Cell division control 98.2 1.2E-05 2.5E-10 76.9 10.5 117 96-225 46-182 (410)
71 cd07386 MPP_DNA_pol_II_small_a 98.2 3.1E-05 6.7E-10 70.8 12.9 75 102-176 2-94 (243)
72 cd07405 MPP_UshA_N Escherichia 98.1 2E-05 4.3E-10 73.8 11.0 51 247-299 172-222 (285)
73 TIGR00282 metallophosphoestera 98.1 0.00015 3.2E-09 66.6 16.3 197 99-337 1-205 (266)
74 COG2908 Uncharacterized protei 98.1 4.8E-06 1E-10 73.6 6.2 70 103-176 2-80 (237)
75 PRK09419 bifunctional 2',3'-cy 98.1 3E-05 6.4E-10 86.2 13.6 190 96-299 658-883 (1163)
76 cd07425 MPP_Shelphs Shewanella 98.1 6.9E-06 1.5E-10 73.1 5.9 68 102-176 1-80 (208)
77 PRK10966 exonuclease subunit S 98.0 7.9E-06 1.7E-10 80.1 6.4 74 99-176 1-87 (407)
78 PHA02546 47 endonuclease subun 98.0 1.4E-05 3E-10 76.8 7.9 75 99-176 1-89 (340)
79 COG0737 UshA 5'-nucleotidase/2 97.9 0.00017 3.7E-09 73.5 14.1 189 94-298 22-247 (517)
80 PRK09558 ushA bifunctional UDP 97.9 0.0001 2.2E-09 75.6 12.4 194 96-299 32-258 (551)
81 cd07380 MPP_CWF19_N Schizosacc 97.9 3.7E-05 8E-10 64.3 7.3 66 102-174 1-68 (150)
82 cd08162 MPP_PhoA_N Synechococc 97.9 0.00013 2.9E-09 69.0 10.9 39 247-299 206-245 (313)
83 TIGR01530 nadN NAD pyrophospha 97.8 0.00023 5E-09 72.8 12.1 146 126-299 49-219 (550)
84 cd07391 MPP_PF1019 Pyrococcus 97.7 5E-05 1.1E-09 65.6 5.1 49 125-176 40-88 (172)
85 PHA02239 putative protein phos 97.6 0.00014 3E-09 65.9 6.4 72 99-176 1-73 (235)
86 cd07424 MPP_PrpA_PrpB PrpA and 97.4 0.00022 4.7E-09 63.5 5.5 63 100-176 2-67 (207)
87 PRK00166 apaH diadenosine tetr 97.4 0.00026 5.7E-09 65.5 5.9 68 99-176 1-69 (275)
88 PRK11907 bifunctional 2',3'-cy 97.4 0.0019 4.2E-08 68.3 12.5 47 247-298 308-354 (814)
89 TIGR00024 SbcD_rel_arch putati 97.3 0.00043 9.4E-09 62.2 6.0 70 99-175 15-101 (225)
90 PRK09419 bifunctional 2',3'-cy 97.3 0.0019 4.2E-08 72.0 12.1 48 247-299 233-281 (1163)
91 COG1692 Calcineurin-like phosp 97.3 0.042 9E-07 48.9 17.7 194 99-335 1-202 (266)
92 cd07423 MPP_PrpE Bacillus subt 97.3 0.00041 8.8E-09 63.0 5.6 71 99-176 1-80 (234)
93 PRK13625 bis(5'-nucleosyl)-tet 97.1 0.00086 1.9E-08 61.3 5.8 71 99-176 1-79 (245)
94 PRK09968 serine/threonine-spec 97.1 0.0007 1.5E-08 60.7 5.1 66 99-176 15-81 (218)
95 cd07390 MPP_AQ1575 Aquifex aeo 97.0 0.0013 2.8E-08 56.4 5.8 42 125-176 41-82 (168)
96 PRK09418 bifunctional 2',3'-cy 97.0 0.023 4.9E-07 60.2 15.5 47 247-299 243-290 (780)
97 PRK11439 pphA serine/threonine 97.0 0.0011 2.3E-08 59.6 5.0 66 99-176 17-83 (218)
98 KOG2863 RNA lariat debranching 97.0 0.0038 8.3E-08 58.1 8.4 177 99-297 1-229 (456)
99 cd07387 MPP_PolD2_C PolD2 (DNA 97.0 0.016 3.5E-07 53.0 12.5 136 101-243 2-176 (257)
100 cd07422 MPP_ApaH Escherichia c 96.9 0.0017 3.7E-08 59.5 5.5 65 102-176 2-67 (257)
101 TIGR01390 CycNucDiestase 2',3' 96.8 0.0064 1.4E-07 63.2 9.9 46 247-298 194-240 (626)
102 cd07413 MPP_PA3087 Pseudomonas 96.8 0.0021 4.6E-08 57.8 5.4 69 101-176 1-76 (222)
103 cd07381 MPP_CapA CapA and rela 96.8 0.013 2.9E-07 53.3 10.5 61 236-302 163-223 (239)
104 cd00144 MPP_PPP_family phospho 96.7 0.0023 5.1E-08 57.5 5.1 66 103-176 2-68 (225)
105 smart00854 PGA_cap Bacterial c 96.6 0.024 5.3E-07 51.6 11.3 50 248-302 172-221 (239)
106 PRK09420 cpdB bifunctional 2', 96.6 0.033 7.2E-07 58.1 13.6 46 247-298 217-263 (649)
107 cd07421 MPP_Rhilphs Rhilph pho 96.6 0.0037 8.1E-08 57.8 5.7 70 100-176 3-80 (304)
108 COG1407 Predicted ICC-like pho 96.5 0.0064 1.4E-07 54.2 6.3 75 98-176 19-110 (235)
109 TIGR00668 apaH bis(5'-nucleosy 96.4 0.005 1.1E-07 56.7 5.3 67 100-176 2-69 (279)
110 KOG3325 Membrane coat complex 96.2 0.049 1.1E-06 44.4 9.1 85 277-393 98-182 (183)
111 PF00041 fn3: Fibronectin type 96.1 0.015 3.4E-07 42.9 5.8 66 3-78 6-75 (85)
112 COG5555 Cytolysin, a secreted 96.0 0.021 4.6E-07 51.7 6.6 172 128-300 128-336 (392)
113 KOG2310 DNA repair exonuclease 95.8 0.024 5.2E-07 55.8 6.6 45 96-141 11-67 (646)
114 cd07420 MPP_RdgC Drosophila me 95.8 0.017 3.6E-07 54.7 5.5 70 100-176 52-123 (321)
115 KOG4419 5' nucleotidase [Nucle 95.7 0.076 1.6E-06 53.2 9.7 182 96-298 40-269 (602)
116 cd07416 MPP_PP2B PP2B, metallo 95.6 0.023 5E-07 53.6 5.8 69 100-176 44-114 (305)
117 smart00156 PP2Ac Protein phosp 95.1 0.043 9.3E-07 50.9 5.8 69 99-176 28-99 (271)
118 PF13277 YmdB: YmdB-like prote 95.1 0.34 7.3E-06 43.8 11.0 192 102-336 1-199 (253)
119 KOG0196 Tyrosine kinase, EPH ( 95.1 0.096 2.1E-06 54.3 8.4 79 3-92 449-537 (996)
120 cd07418 MPP_PP7 PP7, metalloph 95.0 0.042 9.1E-07 53.0 5.6 71 99-176 66-138 (377)
121 cd07415 MPP_PP2A_PP4_PP6 PP2A, 95.0 0.042 9E-07 51.3 5.3 69 100-176 43-113 (285)
122 cd07414 MPP_PP1_PPKL PP1, PPKL 94.7 0.056 1.2E-06 50.7 5.4 68 100-176 51-121 (293)
123 COG1311 HYS2 Archaeal DNA poly 94.7 0.093 2E-06 51.4 6.9 81 96-176 223-321 (481)
124 PTZ00239 serine/threonine prot 94.3 0.081 1.7E-06 49.8 5.5 23 275-297 215-237 (303)
125 COG4186 Predicted phosphoester 94.3 0.14 3.1E-06 42.3 6.1 67 100-175 5-85 (186)
126 PTZ00480 serine/threonine-prot 94.3 0.072 1.6E-06 50.4 5.1 69 100-176 60-130 (320)
127 cd07417 MPP_PP5_C PP5, C-termi 93.8 0.11 2.3E-06 49.3 5.4 71 99-176 60-132 (316)
128 KOG3947 Phosphoesterases [Gene 93.5 2.1 4.6E-05 39.0 12.5 67 96-178 59-128 (305)
129 PF09587 PGA_cap: Bacterial ca 93.3 0.21 4.5E-06 45.8 6.2 64 233-302 169-232 (250)
130 PTZ00244 serine/threonine-prot 93.0 0.094 2E-06 49.1 3.5 23 275-297 224-246 (294)
131 cd07419 MPP_Bsu1_C Arabidopsis 92.5 0.25 5.4E-06 46.8 5.7 22 275-296 242-263 (311)
132 cd00063 FN3 Fibronectin type 3 91.9 0.76 1.7E-05 33.4 6.8 62 7-78 11-76 (93)
133 smart00060 FN3 Fibronectin typ 88.7 1.9 4.2E-05 30.1 6.5 61 10-78 14-76 (83)
134 PF04042 DNA_pol_E_B: DNA poly 84.2 0.6 1.3E-05 41.4 1.8 76 101-176 1-91 (209)
135 KOG4221 Receptor mediating net 82.2 2.3 4.9E-05 46.5 5.3 76 3-91 622-712 (1381)
136 KOG4221 Receptor mediating net 74.8 20 0.00043 39.7 9.5 91 4-107 528-630 (1381)
137 KOG3513 Neural cell adhesion m 70.5 22 0.00047 39.0 8.7 61 9-78 832-896 (1051)
138 KOG0372 Serine/threonine speci 68.6 9 0.00019 34.5 4.6 69 101-176 45-114 (303)
139 KOG0374 Serine/threonine speci 68.3 5.5 0.00012 38.0 3.5 68 100-176 60-131 (331)
140 cd07390 MPP_AQ1575 Aquifex aeo 65.8 6.9 0.00015 33.3 3.4 34 251-302 108-141 (168)
141 PF10179 DUF2369: Uncharacteri 63.7 25 0.00055 32.9 6.8 19 59-77 15-33 (300)
142 COG4186 Predicted phosphoester 57.2 20 0.00044 30.0 4.3 43 251-302 109-151 (186)
143 PTZ00235 DNA polymerase epsilo 56.2 52 0.0011 30.7 7.4 79 97-175 26-121 (291)
144 PF07353 Uroplakin_II: Uroplak 53.2 1.1E+02 0.0023 25.8 7.8 34 59-92 102-140 (184)
145 PF10179 DUF2369: Uncharacteri 53.1 70 0.0015 30.0 7.8 22 58-79 259-280 (300)
146 KOG0371 Serine/threonine prote 48.3 26 0.00057 31.9 4.0 67 101-176 62-131 (319)
147 KOG2476 Uncharacterized conser 45.2 32 0.00069 34.0 4.3 70 98-173 5-75 (528)
148 KOG4258 Insulin/growth factor 41.7 63 0.0014 34.6 6.1 105 2-108 493-624 (1025)
149 KOG0373 Serine/threonine speci 39.5 53 0.0012 29.1 4.4 66 101-176 48-117 (306)
150 cd02856 Glycogen_debranching_e 38.0 45 0.00097 25.6 3.5 23 56-78 44-66 (103)
151 KOG0375 Serine-threonine phosp 37.8 30 0.00066 32.9 2.9 71 100-176 89-159 (517)
152 cd02852 Isoamylase_N_term Isoa 37.2 45 0.00097 26.3 3.5 23 56-78 48-70 (119)
153 cd02853 MTHase_N_term Maltooli 36.2 47 0.001 24.4 3.3 22 57-79 40-61 (85)
154 PF09294 Interfer-bind: Interf 35.9 34 0.00073 26.2 2.6 19 60-78 68-86 (106)
155 KOG3332 N-acetylglucosaminyl p 35.9 99 0.0022 27.6 5.5 94 196-291 46-141 (247)
156 TIGR02855 spore_yabG sporulati 35.7 30 0.00065 31.8 2.5 60 217-298 106-166 (283)
157 cd07424 MPP_PrpA_PrpB PrpA and 34.4 38 0.00083 29.7 3.0 14 286-299 168-181 (207)
158 PF05582 Peptidase_U57: YabG p 33.8 40 0.00087 31.2 2.9 59 218-298 108-167 (287)
159 TIGR03413 GSH_gloB hydroxyacyl 32.8 79 0.0017 28.7 4.9 46 129-175 120-166 (248)
160 cd02860 Pullulanase_N_term Pul 31.4 61 0.0013 24.6 3.3 25 55-79 45-69 (100)
161 COG2248 Predicted hydrolase (m 30.5 1.3E+02 0.0027 27.6 5.4 77 96-176 174-250 (304)
162 COG2843 PgsA Putative enzyme o 29.9 99 0.0021 30.0 5.1 62 234-302 210-272 (372)
163 PF01784 NIF3: NIF3 (NGG1p int 26.1 63 0.0014 29.3 2.9 43 253-297 56-98 (241)
164 PF06874 FBPase_2: Firmicute f 25.8 40 0.00086 34.8 1.7 48 119-177 178-225 (640)
165 PF03808 Glyco_tran_WecB: Glyc 24.8 2.1E+02 0.0045 24.3 5.8 52 231-294 58-109 (172)
166 cd01987 USP_OKCHK USP domain i 24.0 3.2E+02 0.007 21.0 6.5 23 275-297 74-96 (124)
167 PRK10799 metal-binding protein 22.5 1.3E+02 0.0028 27.3 4.3 43 253-298 59-101 (247)
168 PF02922 CBM_48: Carbohydrate- 21.4 1.2E+02 0.0026 21.9 3.2 25 56-80 48-74 (85)
169 PRK13738 conjugal transfer pil 20.5 1.6E+02 0.0034 26.1 4.2 31 217-254 122-152 (209)
170 KOG3513 Neural cell adhesion m 20.3 2.5E+02 0.0054 31.2 6.3 67 5-78 623-693 (1051)
171 PF00753 Lactamase_B: Metallo- 20.0 1.5E+02 0.0032 24.6 4.0 43 129-171 139-193 (194)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-76 Score=556.04 Aligned_cols=388 Identities=41% Similarity=0.662 Sum_probs=333.5
Q ss_pred CeeeccCCCCCcEEEEEEcCCCCCCCEEEEeecCCCC-----ceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEE
Q 040421 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENSTL-----KQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYE 75 (407)
Q Consensus 1 v~l~~g~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~ 75 (407)
|||++++... +|+|+|.|.+. ....|+||...... ...+.+.+..+...++..+++|+|+|++|+|+|+|||+
T Consensus 48 vhlS~~~~~~-~m~VswvT~~~-~~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~~~~~sg~ih~~~~~~L~~~t~YyY~ 125 (452)
T KOG1378|consen 48 VHLSFTDNLN-EMRVSWVTGDG-EENVVRYGEVKDKLDNSAARGMTEAWTDGYANGWRDSGYIHDAVMKNLEPNTRYYYQ 125 (452)
T ss_pred EEEeccCCCC-cEEEEEeCCCC-CCceEEEeecCCCccccccccceEEEecccccccceeeeEeeeeecCCCCCceEEEE
Confidence 7999999865 99999999864 34999999865542 22333333333333467899999999999999999999
Q ss_pred eCcC-CceeeEEEEcCCCCCCCCCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHH
Q 040421 76 VGVG-NATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWG 154 (407)
Q Consensus 76 v~~~-~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~ 154 (407)
|+++ .||++++|+|+| ++..+.+|+++||++.......++....++. ++|+|||+||++|+++..+ .+||+|.
T Consensus 126 ~Gs~~~wS~~f~F~t~p--~~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~-k~d~vlhiGDlsYa~~~~n---~~wD~f~ 199 (452)
T KOG1378|consen 126 VGSDLKWSEIFSFKTPP--GQDSPTRAAIFGDMGCTEPYTSTLRNQEENL-KPDAVLHIGDLSYAMGYSN---WQWDEFG 199 (452)
T ss_pred eCCCCCcccceEeECCC--CccCceeEEEEccccccccccchHhHHhccc-CCcEEEEecchhhcCCCCc---cchHHHH
Confidence 9997 589999999998 3458999999999999887766777666663 7999999999999988643 6999999
Q ss_pred HHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC--CCChH
Q 040421 155 RFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF--GKYTP 232 (407)
Q Consensus 155 ~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~--~~~~~ 232 (407)
++++++++.+|+|++.||||..+.+.. .|.+|.++|.||.+++.+..+.||||++|++|||+|+|+.++ ....+
T Consensus 200 r~vEp~As~vPymv~~GNHE~d~~~~~----~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~ 275 (452)
T KOG1378|consen 200 RQVEPIASYVPYMVCSGNHEIDWPPQP----CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTA 275 (452)
T ss_pred hhhhhhhccCceEEecccccccCCCcc----cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccch
Confidence 999999999999999999999765433 588999999999998887888999999999999999998875 34689
Q ss_pred HHHHHHHhccccCCCCCCeEEEEeeccccccCCC-CCCCCh--hHHHHHHHHHHhCCCcEEEecccccccccccccccee
Q 040421 233 QYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVH-HYMEGE--PMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAY 309 (407)
Q Consensus 233 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~-~~~~~~--~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~ 309 (407)
|++||+++|++++|.+.||+||++|+|+|++... +.++++ .+|..|++||.+++||++|+||.|+|||++|+++.++
T Consensus 276 QY~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~ 355 (452)
T KOG1378|consen 276 QYQWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTC 355 (452)
T ss_pred HHHHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhccee
Confidence 9999999999998776899999999999998874 556665 7889999999999999999999999999999999987
Q ss_pred eccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCCceeeeeeE
Q 040421 310 NVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDDYAVEADSV 389 (407)
Q Consensus 310 ~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~~D~~ 389 (407)
....+ +.++.++.+|+||++|+||+.++... ...++|+||++|+.+|||++|++.|+||+.++++++.|++.++.|+|
T Consensus 356 ~~~~~-~~~~~d~~aPvyI~~G~~G~~e~~~~-~~~~~p~~Sa~R~~dfG~~~L~v~N~TH~~~~~~~~~d~~g~~~D~f 433 (452)
T KOG1378|consen 356 GTGWG-PVHLVDGMAPIYITVGDGGNHEHLDP-FSSPQPEWSAFREGDFGYTRLTAKNGTHAHVHWVRNSDASGVVIDSF 433 (452)
T ss_pred eccCC-cccccCCCCCEEEEEccCCcccccCc-ccCCCCcccccccccCCeEEEEEecCceEEEEEEeccCCCceEeeeE
Confidence 76666 78889999999999999999887643 34479999999999999999999999999999999877655567999
Q ss_pred EEEecccCCCCCC
Q 040421 390 WLHNRYWKPSGEL 402 (407)
Q Consensus 390 ~i~~~~~~~~~~~ 402 (407)
+|.|+.+.+....
T Consensus 434 wl~k~~~~~~~~~ 446 (452)
T KOG1378|consen 434 WLIKDYRDMVVGV 446 (452)
T ss_pred EEEcccCcccccc
Confidence 9999988876553
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=2.6e-73 Score=555.14 Aligned_cols=374 Identities=39% Similarity=0.712 Sum_probs=316.7
Q ss_pred CeeeccCCCCCcEEEEEEcCCCCCCCEEEEeecCCCCceEEEEEEEEEEe-cCCcceeEEEEEEcCCCCCCEEEEEeCcC
Q 040421 1 VHITQGDHEGKGVIVSWVTPDEPGSNTVLYWAENSTLKQQAHGIVLTYNY-FNYTSNCIHHCTIEDLEFDTKYYYEVGVG 79 (407)
Q Consensus 1 v~l~~g~~~~~~~~v~W~t~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~~ 79 (407)
|||+++. .++|+|+|.|.+. ..+.|+||++++.+..++.+++.+|.. ....++++|+|+|+||+|+|+|+|||+..
T Consensus 47 vhls~~~--~~~m~V~W~T~~~-~~~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yrvg~~ 123 (427)
T PLN02533 47 VHISLVG--PDKMRISWITQDS-IPPSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYKCGGP 123 (427)
T ss_pred EEEEEcC--CCeEEEEEECCCC-CCCEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEEECCC
Confidence 7999997 4799999999864 568999999988888888888877764 23457899999999999999999999987
Q ss_pred CceeeEEEEcCCCCCCCCCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhh
Q 040421 80 NATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIER 159 (407)
Q Consensus 80 ~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~ 159 (407)
.+|+.++|+|+|.. .++||+++||+|.......+++++.+. +|||||++||++|+++ .+..|+.|++++++
T Consensus 124 ~~s~~~~F~T~p~~---~~~~f~v~GDlG~~~~~~~tl~~i~~~--~pD~vl~~GDl~y~~~----~~~~wd~f~~~i~~ 194 (427)
T PLN02533 124 SSTQEFSFRTPPSK---FPIKFAVSGDLGTSEWTKSTLEHVSKW--DYDVFILPGDLSYANF----YQPLWDTFGRLVQP 194 (427)
T ss_pred CCccceEEECCCCC---CCeEEEEEEeCCCCcccHHHHHHHHhc--CCCEEEEcCccccccc----hHHHHHHHHHHhhh
Confidence 77899999998853 689999999998765555677777664 8999999999999754 25689999999999
Q ss_pred hhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHH
Q 040421 160 NAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEK 239 (407)
Q Consensus 160 ~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~ 239 (407)
+.+.+|+|+++||||....+.. ....|..|..+|.||..+.+...+.||||++|++|||+||++.++....+|++||++
T Consensus 195 l~s~~P~m~~~GNHE~~~~~~~-~~~~f~~y~~rf~mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~ 273 (427)
T PLN02533 195 LASQRPWMVTHGNHELEKIPIL-HPEKFTAYNARWRMPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLEN 273 (427)
T ss_pred HhhcCceEEeCccccccccccc-cCcCccchhhcccCCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHH
Confidence 9999999999999998643211 123467788999999876666678999999999999999999877778999999999
Q ss_pred hccccCCCCCCeEEEEeeccccccCCCCCCC--ChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCccc
Q 040421 240 EFPKVNRSETPWLIVLMHCPLYNSYVHHYME--GEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCS 317 (407)
Q Consensus 240 ~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~--~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~ 317 (407)
+|+++++++.+|+||++|+|+|++...+... ...+++.|++||++++||++|+||+|.|||++|+++++ +
T Consensus 274 dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~-------~- 345 (427)
T PLN02533 274 NLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVGMKESMETLLYKARVDLVFAGHVHAYERFDRVYQGK-------T- 345 (427)
T ss_pred HHHhhcccCCCEEEEEeCCCeeecccccCCcchhHHHHHHHHHHHHHhCCcEEEecceecccccccccCCc-------c-
Confidence 9999877788999999999999876543222 24578899999999999999999999999999987654 2
Q ss_pred ccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCCceeeeeeEEEEecccC
Q 040421 318 PVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDDYAVEADSVWLHNRYWK 397 (407)
Q Consensus 318 ~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~~D~~~i~~~~~~ 397 (407)
+++|++||++|+||+.++....+..++|+|+++++..|||++|+|.|.+++.|+|+++.+|+.++.|+|+|.|--..
T Consensus 346 ---~~~gpvyiv~G~gG~~e~~~~~~~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~~~~~~~~~~~~D~~~i~~~~~~ 422 (427)
T PLN02533 346 ---DKCGPVYITIGDGGNREGLATKYIDPKPDISLFREASFGHGQLNVVDANTMEWTWHRNDDDQSVASDSVWLKSLLTE 422 (427)
T ss_pred ---CCCCCEEEEeCCCccccccccccCCCCCCceeEEeccCCEEEEEEEcCCeEEEEEEecCCCCceeeeEEEEEeccCC
Confidence 46899999999999988764455667889999999999999999999999999999988886545899999986544
Q ss_pred C
Q 040421 398 P 398 (407)
Q Consensus 398 ~ 398 (407)
|
T Consensus 423 ~ 423 (427)
T PLN02533 423 P 423 (427)
T ss_pred C
Confidence 4
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=5.7e-49 Score=370.87 Aligned_cols=287 Identities=44% Similarity=0.770 Sum_probs=223.6
Q ss_pred CCCcEEEEEecCCCC-CCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCc
Q 040421 96 DVPYTFGLIGDLGQT-YYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHE 174 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~-~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD 174 (407)
..++||+++||+|.. .....+++++.+...+|||||++||++|+.+.. ...+|+.|++.++++...+|+++++||||
T Consensus 2 ~~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~--~~~~~~~~~~~~~~~~~~~P~~~~~GNHD 79 (294)
T cd00839 2 DTPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN--NGSRWDTFMRQIEPLASYVPYMVTPGNHE 79 (294)
T ss_pred CCcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc--cchhHHHHHHHHHHHHhcCCcEEcCcccc
Confidence 368999999999974 445677888777424899999999999976532 23689999999999988999999999999
Q ss_pred cccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC---CCChHHHHHHHHhccccCCCCCCe
Q 040421 175 IDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF---GKYTPQYKWLEKEFPKVNRSETPW 251 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~---~~~~~Q~~WL~~~L~~~~~~~~~~ 251 (407)
......... ...+..++.++........+.||+|++|++|||+|||+... ....+|++||+++|+++++.+.+|
T Consensus 80 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~WL~~~L~~~~~~~~~~ 156 (294)
T cd00839 80 ADYNFSFYK---IKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDWLEADLAKVDRSKTPW 156 (294)
T ss_pred cccCCCCcc---cccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHHHHHHHHHhcccCCCe
Confidence 964321110 01111123334333344567899999999999999997654 457899999999999876556789
Q ss_pred EEEEeeccccccCCCCCC--CChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEE
Q 040421 252 LIVLMHCPLYNSYVHHYM--EGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYIT 329 (407)
Q Consensus 252 ~iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv 329 (407)
+||++|+|+|+....... .....++.|.+||++++|+++|+||+|.|+|++|+++++.. +.+..+.+++|++||+
T Consensus 157 ~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~---~~~~~~~~~~g~~yiv 233 (294)
T cd00839 157 IIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVV---GDCNPYSNPKGPVHIV 233 (294)
T ss_pred EEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEec---cccccccCCCccEEEE
Confidence 999999999987654322 23567889999999999999999999999999999876521 3444567889999999
Q ss_pred eCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCCceeeeeeEEEEe
Q 040421 330 IGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDDYAVEADSVWLHN 393 (407)
Q Consensus 330 ~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~~D~~~i~~ 393 (407)
+|+||+....... ..+.++|++++...+||++|++.++++|.++|+++.+|+++ |+|+|.|
T Consensus 234 ~G~~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~t~l~~~~~~~~~g~v~--D~f~i~k 294 (294)
T cd00839 234 IGAGGNDEGLDPF-SAPPPAWSAFRESDYGFGRLTVHNSTHLHFEWIRNDDGVVI--DSFWIIK 294 (294)
T ss_pred ECCCccccCcCcc-cCCCCCceEEEeccCCEEEEEEEecCeEEEEEEECCCCeEE--EEEEEeC
Confidence 9999998764211 11235789888889999999998888999999998899986 9999986
No 4
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=100.00 E-value=9.5e-39 Score=301.69 Aligned_cols=259 Identities=14% Similarity=0.206 Sum_probs=194.5
Q ss_pred CCCcEEEEEecCCCCCCchhh----HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhH-HHHHHhhhh--ccCCeEE
Q 040421 96 DVPYTFGLIGDLGQTYYSNRT----LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDT-WGRFIERNA--AYQPWIW 168 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~----l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~-~~~~~~~~~--~~~P~~~ 168 (407)
...++|+++||+|.+...+.. |.++.++ .++||||.+||++ .+|..+.++.+|+. |.+.+.... .++||++
T Consensus 24 ~~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~-~~~~FVls~GDNF-~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~ 101 (394)
T PTZ00422 24 KAQLRFASLGNWGTGSKQQKLVASYLKQYAKN-ERVTFLVSPGSNF-PGGVDGLNDPKWKHCFENVYSEESGDMQIPFFT 101 (394)
T ss_pred CCeEEEEEEecCCCCchhHHHHHHHHHHHHHh-CCCCEEEECCccc-cCCCCCccchhHHhhHhhhccCcchhhCCCeEE
Confidence 468999999999986655544 3445555 4899999999999 67877777888876 556665544 5789999
Q ss_pred ccCCCccccCCCCCCccc-c---------------c---ccccccccCCCCCCCCCCeEEEE----ec------------
Q 040421 169 TVGNHEIDFAPQLGEAIP-F---------------K---PFANRFHLPYRAPYSTAPFWYSI----RR------------ 213 (407)
Q Consensus 169 ~~GNHD~~~~~~~~~~~~-~---------------~---~~~~~f~~P~~~~~~~~~~~ysf----~~------------ 213 (407)
|+||||+..+. .++.. + . ....+|.||. .||++ ..
T Consensus 102 vLGNHDy~Gn~--~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f~~~~~~~~~~~~~~ 171 (394)
T PTZ00422 102 VLGQADWDGNY--NAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHFTDTSGPSLLKSGHK 171 (394)
T ss_pred eCCcccccCCc--hhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeeeecccccccccccCC
Confidence 99999996432 12111 1 0 1236888885 57754 21
Q ss_pred -CcEEEEEEecccc-----CC-CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCC
Q 040421 214 -ASAHIIVMSCYSA-----FG-KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYK 286 (407)
Q Consensus 214 -g~v~fi~Lds~~~-----~~-~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~ 286 (407)
..+.||+|||..- +. ....|++||+++|+.+ ++.++|+||++|||+|+++.++ ....+++.|+|||++|+
T Consensus 172 ~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~hg--~~~~L~~~L~PLL~ky~ 248 (394)
T PTZ00422 172 DMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSSK--GDSYLSYYLLPLLKDAQ 248 (394)
T ss_pred CCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCCC--CCHHHHHHHHHHHHHcC
Confidence 2389999999531 11 2467899999999654 2567899999999999988643 34668899999999999
Q ss_pred CcEEEeccccccccccccccceeeccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEe
Q 040421 287 VDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVK 366 (407)
Q Consensus 287 vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~ 366 (407)
||++|+||+|+|||.. .+++.||++|+||...+. . . ..++++.|....+||+.+++
T Consensus 249 VdlYisGHDH~lq~i~-------------------~~gt~yIvSGaGs~~~~~--~-~-~~~~~s~F~~~~~GF~~~~l- 304 (394)
T PTZ00422 249 VDLYISGYDRNMEVLT-------------------DEGTAHINCGSGGNSGRK--S-I-MKNSKSLFYSEDIGFCIHEL- 304 (394)
T ss_pred cCEEEEccccceEEec-------------------CCCceEEEeCccccccCC--C-C-CCCCCcceecCCCCEEEEEE-
Confidence 9999999999999985 256889999999886542 1 1 23357888888899999998
Q ss_pred eccEEEEEEEEcCCCceeeeeeEEEEecc
Q 040421 367 NRTHAYFGWHRNQDDYAVEADSVWLHNRY 395 (407)
Q Consensus 367 ~~~~~~~~~~~~~~g~~~~~D~~~i~~~~ 395 (407)
+++.++++|+.+.+|+++ +++++.++.
T Consensus 305 ~~~~l~~~fid~~~GkvL--~~~~~~~~~ 331 (394)
T PTZ00422 305 NAEGMVTKFVSGNTGEVL--YTHKQPLKK 331 (394)
T ss_pred ecCEEEEEEEeCCCCcEE--EEeeecccc
Confidence 566799999865789987 999886653
No 5
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=4.2e-35 Score=274.01 Aligned_cols=248 Identities=21% Similarity=0.381 Sum_probs=176.3
Q ss_pred cEEEEEecCCCC-CCch----hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhh-hHHHHHHhhhhccCCeEEccCC
Q 040421 99 YTFGLIGDLGQT-YYSN----RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRW-DTWGRFIERNAAYQPWIWTVGN 172 (407)
Q Consensus 99 ~~f~~~gD~~~~-~~~~----~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~P~~~~~GN 172 (407)
++|+++||+|.. ...+ ..+.++++. .+|||||++||++|+++........| +.|.+.++.+...+|+++++||
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~-~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~P~~~v~GN 79 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAE-LGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPSLQVPWYLVLGN 79 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHh-cCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchhhcCCeEEecCC
Confidence 589999999986 2322 233444444 48999999999999887543333444 3455555555567999999999
Q ss_pred CccccCCCCCCcccccc--cccccccCCCCCCCCCCeEEEEecC------cEEEEEEeccccC---------------CC
Q 040421 173 HEIDFAPQLGEAIPFKP--FANRFHLPYRAPYSTAPFWYSIRRA------SAHIIVMSCYSAF---------------GK 229 (407)
Q Consensus 173 HD~~~~~~~~~~~~~~~--~~~~f~~P~~~~~~~~~~~ysf~~g------~v~fi~Lds~~~~---------------~~ 229 (407)
||+..+ ......+.. +..+|.+| ..||+|+++ +++||+|||.... ..
T Consensus 80 HD~~~~--~~~~~~~~~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 80 HDYSGN--VSAQIDYTKRPNSPRWTMP--------AYYYRVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred cccCCC--chheeehhccCCCCCccCc--------chheEEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 998532 111111111 13334444 468999988 7999999996421 13
Q ss_pred ChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccccccccee
Q 040421 230 YTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAY 309 (407)
Q Consensus 230 ~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~ 309 (407)
..+|++||+++|+++ ..+|+||++|||+++..... .....++.|.+++++++|+++|+||.|.+++..+
T Consensus 150 ~~~Q~~wL~~~L~~~---~~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~~------ 218 (277)
T cd07378 150 AEEQLAWLEKTLAAS---TADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIKD------ 218 (277)
T ss_pred HHHHHHHHHHHHHhc---CCCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeCCcccceeeec------
Confidence 578999999999985 33799999999999765422 2256788999999999999999999999998863
Q ss_pred eccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCC
Q 040421 310 NVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDD 381 (407)
Q Consensus 310 ~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g 381 (407)
...++.||++|+||...+.........|.|..++...+||++|+|.+ ..++++|+. .||
T Consensus 219 -----------~~~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~Gy~~i~v~~-~~l~~~~~~-~~g 277 (277)
T cd07378 219 -----------DGSGTSFVVSGAGSKARPSVKHIDKVPQFFSGFTSSGGGFAYLELTK-EELTVRFYD-ADG 277 (277)
T ss_pred -----------CCCCcEEEEeCCCcccCCCCCccCcccccccccccCCCCEEEEEEec-CEEEEEEEC-CCC
Confidence 13578999999998876532221212234677777889999999964 569999974 565
No 6
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=238.42 Aligned_cols=262 Identities=17% Similarity=0.273 Sum_probs=178.3
Q ss_pred CCCCcEEEEEecCCCCCCchh-----hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhH-HHHHHhhhhccCCeEE
Q 040421 95 PDVPYTFGLIGDLGQTYYSNR-----TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDT-WGRFIERNAAYQPWIW 168 (407)
Q Consensus 95 ~~~~~~f~~~gD~~~~~~~~~-----~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~P~~~ 168 (407)
++..++|+++||+|......+ .+.++.+. .+.||||.+||++|.+|..+..+..++. |.+.+..-..+.|||.
T Consensus 40 ~dgslsflvvGDwGr~g~~nqs~va~qmg~ige~-l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQkpWy~ 118 (336)
T KOG2679|consen 40 SDGSLSFLVVGDWGRRGSFNQSQVALQMGEIGEK-LDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQKPWYS 118 (336)
T ss_pred CCCceEEEEEcccccCCchhHHHHHHHHHhHHHh-ccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccccchhh
Confidence 468999999999996543221 22334444 4899999999999999987666665544 4444433334579999
Q ss_pred ccCCCccccCCCCCCccc--ccccccccccCCCCCCCCCCeEEE------EecCcEEEEEEeccc-------cCC-----
Q 040421 169 TVGNHEIDFAPQLGEAIP--FKPFANRFHLPYRAPYSTAPFWYS------IRRASAHIIVMSCYS-------AFG----- 228 (407)
Q Consensus 169 ~~GNHD~~~~~~~~~~~~--~~~~~~~f~~P~~~~~~~~~~~ys------f~~g~v~fi~Lds~~-------~~~----- 228 (407)
++||||+..+ ..++.. +.....+|..|.. ||. +..-++.++++|+.. ++.
T Consensus 119 vlGNHDyrGn--V~AQls~~l~~~d~RW~c~rs--------f~~~ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR 188 (336)
T KOG2679|consen 119 VLGNHDYRGN--VEAQLSPVLRKIDKRWICPRS--------FYVDAEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPR 188 (336)
T ss_pred hccCccccCc--hhhhhhHHHHhhccceecccH--------HhhcceeeeeeccccccchhhheecccccccccccCChH
Confidence 9999999743 223322 3444566665532 111 111233444444321 111
Q ss_pred --CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccccccc
Q 040421 229 --KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSN 306 (407)
Q Consensus 229 --~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~ 306 (407)
....++.||+..|++ +.++|+||++|||+.+.+.+ +...+++++|.|||++++||++++||+|+.|+....
T Consensus 189 ~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~~H--G~T~eL~~~LlPiL~~n~VdlY~nGHDHcLQhis~~-- 261 (336)
T KOG2679|consen 189 VKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAGHH--GPTKELEKQLLPILEANGVDLYINGHDHCLQHISSP-- 261 (336)
T ss_pred HHHHHHHHHHHHHHHHH---hhcceEEEecccceehhhcc--CChHHHHHHHHHHHHhcCCcEEEecchhhhhhccCC--
Confidence 125789999999998 67889999999999988765 456789999999999999999999999999998621
Q ss_pred ceeeccCCcccccCCCCCceEEEeCCCCCCCCCcccCC-CCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCCceee
Q 040421 307 IAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMT-EPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDDYAVE 385 (407)
Q Consensus 307 ~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~-~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~ 385 (407)
..++-|+++|+|...-.. .... ...|+...|...+-||..+++ ....+++.|++ .-|+++
T Consensus 262 ---------------e~~iqf~tSGagSkaw~g-~~~~~~~~p~~lkF~YdgqGfmsv~i-s~~e~~vvfyD-~~G~~L- 322 (336)
T KOG2679|consen 262 ---------------ESGIQFVTSGAGSKAWRG-TDHNPEVNPKELKFYYDGQGFMSVEI-SHSEARVVFYD-VSGKVL- 322 (336)
T ss_pred ---------------CCCeeEEeeCCcccccCC-CccCCccChhheEEeeCCCceEEEEE-ecceeEEEEEe-ccCceE-
Confidence 355667777766554221 1111 224555667667779999999 45678898986 579986
Q ss_pred eeeEEEEec
Q 040421 386 ADSVWLHNR 394 (407)
Q Consensus 386 ~D~~~i~~~ 394 (407)
.++...|+
T Consensus 323 -hk~~t~kr 330 (336)
T KOG2679|consen 323 -HKWSTSKR 330 (336)
T ss_pred -EEeecccc
Confidence 66665554
No 7
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.96 E-value=8e-29 Score=229.58 Aligned_cols=231 Identities=18% Similarity=0.200 Sum_probs=157.9
Q ss_pred CCcEEEEEecCCCCCC--c---------------hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhh
Q 040421 97 VPYTFGLIGDLGQTYY--S---------------NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIER 159 (407)
Q Consensus 97 ~~~~f~~~gD~~~~~~--~---------------~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~ 159 (407)
++++|+++||+|.+.. . ...++.+.+...+|||||++||+++..........+|+.+.+.++.
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL 82 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh
Confidence 5899999999998731 1 1112223332238999999999997643211112346666777776
Q ss_pred hhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC------CCChHH
Q 040421 160 NAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF------GKYTPQ 233 (407)
Q Consensus 160 ~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~------~~~~~Q 233 (407)
+...+|+++++||||+...+.. ..+..|...| ++.+|+|++++++||+|||.... ....+|
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~---~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds~~~~~~~~~~~~~~~q 149 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTE---ESIKDYRDVF----------GDDYFSFWVGGVFFIVLNSQLFFDPSEVPELAQAQ 149 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCCh---hHHHHHHHHh----------CCcceEEEECCEEEEEeccccccCccccccchHHH
Confidence 6667899999999998532111 1112222222 23589999999999999995421 124789
Q ss_pred HHHHHHhccccCCCCCCeEEEEeeccccccCCCCC----CCChhHHHHHHHHHHhCCCcEEEecccccccccccccccee
Q 040421 234 YKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHY----MEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAY 309 (407)
Q Consensus 234 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~----~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~ 309 (407)
++||+++|+++.+.+.+++||++|+|++....... ......++.|.++|++++|+++||||+|.+.+..
T Consensus 150 l~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~GH~H~~~~~~------- 222 (262)
T cd07395 150 DVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSGHYHRNAGGR------- 222 (262)
T ss_pred HHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEECccccCCceE-------
Confidence 99999999986434567899999999986443211 1234567899999999999999999999887643
Q ss_pred eccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEE
Q 040421 310 NVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWH 376 (407)
Q Consensus 310 ~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~ 376 (407)
-+++.|++++++|.... ...+||..++++.++ ++++|+
T Consensus 223 ------------~~g~~~~~~~~~~~~~~----------------~~~~g~~~~~v~~~~-~~~~~~ 260 (262)
T cd07395 223 ------------YGGLEMVVTSAIGAQLG----------------NDKSGLRIVKVTEDK-IVHEYY 260 (262)
T ss_pred ------------ECCEEEEEcCceecccC----------------CCCCCcEEEEECCCc-eeeeee
Confidence 14567888887775321 123799999996554 788876
No 8
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.95 E-value=2.9e-26 Score=228.24 Aligned_cols=288 Identities=19% Similarity=0.233 Sum_probs=146.5
Q ss_pred eeccCCCCCcEEEEEEcCCC----------CCCCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEE
Q 040421 3 ITQGDHEGKGVIVSWVTPDE----------PGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKY 72 (407)
Q Consensus 3 l~~g~~~~~~~~v~W~t~~~----------~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y 72 (407)
++.|++++++ +|.|..-.. +....+++++.+........+.+.. .....+++++.|+||+|+|.|
T Consensus 3 vasGdp~~~s-vilWtR~~~~~~~~~~~~~~~~V~~~va~d~~~~~~~~~~~~~~----~~~~d~t~~v~v~gL~p~t~Y 77 (453)
T PF09423_consen 3 VASGDPTPDS-VILWTRVTPPAAAGGMPKAPVPVRWEVATDPEFSNVVRSGTVTT----TAERDFTVKVDVTGLQPGTRY 77 (453)
T ss_dssp EEEE---SS--EEEEEE--SBGGTB---SS-EEEEEEEESSTTSSSEEEEEEEEE-----GGGTTEEEEEE-S--TT-EE
T ss_pred ccccCCCCCE-EEEEEEecCcccCCCCCCCcEEEEEEEECCCCccceEEecceec----ccCCCeEeecccCCCCCCceE
Confidence 5678876555 555776544 2233444555544333333344322 235789999999999999999
Q ss_pred EEEeCcC---CceeeEEEEcCCCCCCCCCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCC---CC--
Q 040421 73 YYEVGVG---NATRQFSFTTPPGVGPDVPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDY---PF-- 144 (407)
Q Consensus 73 ~Y~v~~~---~~s~~~~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~---~~-- 144 (407)
+||+... ..++.++|+|+|.. ....+||++++|.+.......++..+.+. .+|||+||+||++|.+.. ..
T Consensus 78 ~Y~~~~~~~~~~s~~g~~rT~p~~-~~~~~r~a~~SC~~~~~~~~~~~~~~a~~-~~~D~~l~lGD~IY~d~~~~~~~~~ 155 (453)
T PF09423_consen 78 YYRFVVDGGGQTSPVGRFRTAPDG-DPDPFRFAFGSCQNYEDGYFPAYRRIAER-DDPDFVLHLGDQIYEDGGGGYGNLS 155 (453)
T ss_dssp EEEEEE--TTEE---EEEE--TT------EEEEEE----CCC---HHHHHHTT--S--SEEEE-S-SS----TTSS--TT
T ss_pred EEEEEEecCCCCCCceEEEcCCCC-CCCceEEEEECCCCcccChHHHHHhhhcc-CCCcEEEEeCCeeeccCCccccccc
Confidence 9999883 56789999999654 34579999999998765556777888774 389999999999999862 00
Q ss_pred -----------CCchhhhHHH---------HHHhhhhccCCeEEccCCCccccCCCCCCc-------ccc--------cc
Q 040421 145 -----------HDNNRWDTWG---------RFIERNAAYQPWIWTVGNHEIDFAPQLGEA-------IPF--------KP 189 (407)
Q Consensus 145 -----------~~~~~~~~~~---------~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~-------~~~--------~~ 189 (407)
......+.|. ..++.+.+.+|+++++.+||+..+...... ..+ .+
T Consensus 156 ~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~~~~~~~~~~~~~~~a~~a 235 (453)
T PF09423_consen 156 RRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAENHQDTSGDFQDRRRAAYQA 235 (453)
T ss_dssp ---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-STT---HHHHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCccccccccccchHHHHHHHHHH
Confidence 0001111221 234456678999999999999533221111 001 11
Q ss_pred cccccccCCCC---CCCCCCeEEEEecCc-EEEEEEecccc-----C----------------CCChHHHHHHHHhcccc
Q 040421 190 FANRFHLPYRA---PYSTAPFWYSIRRAS-AHIIVMSCYSA-----F----------------GKYTPQYKWLEKEFPKV 244 (407)
Q Consensus 190 ~~~~f~~P~~~---~~~~~~~~ysf~~g~-v~fi~Lds~~~-----~----------------~~~~~Q~~WL~~~L~~~ 244 (407)
|.+. +|... .......|++|.+|+ +.|++||+... . -.+.+|++||++.|++
T Consensus 236 y~e~--~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~mLG~~Q~~wL~~~L~~- 312 (453)
T PF09423_consen 236 YFEY--QPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTMLGEEQWDWLEDWLAS- 312 (453)
T ss_dssp HHHH--S---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--SS-HHHHHHHHHHHHH-
T ss_pred HHhh--cCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCcCCHHHHHHHHHHHhc-
Confidence 2221 23221 112345689999999 99999998421 0 1368999999999998
Q ss_pred CCCCCCeEEEEeeccccccCCC-----------CCCCChhHHHHHHHHHHhCCCc--EEEecccccccccc
Q 040421 245 NRSETPWLIVLMHCPLYNSYVH-----------HYMEGEPMRVLYEPWFVEYKVD--VVFAAHVHAYERSE 302 (407)
Q Consensus 245 ~~~~~~~~iv~~H~P~~~~~~~-----------~~~~~~~~~~~l~~l~~~~~vd--lvl~GH~H~y~r~~ 302 (407)
+.++|+||+.-.|+...... .+..-...|++|..+|.+.++. ++|+|+.|...-..
T Consensus 313 --s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDvH~~~~~~ 381 (453)
T PF09423_consen 313 --SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDVHASAASR 381 (453)
T ss_dssp ----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SSSSEEEEE
T ss_pred --CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCcchheeee
Confidence 55889999998887543221 1222345788999999988775 89999999876554
No 9
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.93 E-value=3.6e-25 Score=202.51 Aligned_cols=219 Identities=16% Similarity=0.138 Sum_probs=146.3
Q ss_pred EEEEEecCCCCCCc---------hhhHH----HhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCe
Q 040421 100 TFGLIGDLGQTYYS---------NRTLT----HYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPW 166 (407)
Q Consensus 100 ~f~~~gD~~~~~~~---------~~~l~----~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 166 (407)
||++++|+|.+... ...++ .+.+...+||+||++||+++... ...|+.+.+.++.+ .+|+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~-----~~~~~~~~~~l~~~--~~p~ 73 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGS-----PESYERLRELLAAL--PIPV 73 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCC-----HHHHHHHHHHHhhc--CCCE
Confidence 69999999987531 12233 33333238999999999996522 34566666776665 6899
Q ss_pred EEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC----CCChHHHHHHHHhcc
Q 040421 167 IWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF----GKYTPQYKWLEKEFP 242 (407)
Q Consensus 167 ~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~----~~~~~Q~~WL~~~L~ 242 (407)
++++||||... .+...|..... .....+|+|+.++++||+||+.... ....+|++||++.|+
T Consensus 74 ~~v~GNHD~~~-----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~~~~~~~ql~wL~~~L~ 139 (240)
T cd07402 74 YLLPGNHDDRA-----------AMRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHGGELCAAQLDWLEAALA 139 (240)
T ss_pred EEeCCCCCCHH-----------HHHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcCCEECHHHHHHHHHHHH
Confidence 99999999831 11112211100 1234678999999999999986432 135789999999999
Q ss_pred ccCCCCCCeEEEEeeccccccCCCCC-CCChhHHHHHHHHHHhC-CCcEEEeccccccccccccccceeeccCCcccccC
Q 040421 243 KVNRSETPWLIVLMHCPLYNSYVHHY-MEGEPMRVLYEPWFVEY-KVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVS 320 (407)
Q Consensus 243 ~~~~~~~~~~iv~~H~P~~~~~~~~~-~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~ 320 (407)
++. .+++|+++|+|++....... ......++.+.+++.++ +|+++|+||.|......
T Consensus 140 ~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~~------------------ 198 (240)
T cd07402 140 EAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDGS------------------ 198 (240)
T ss_pred hCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHeE------------------
Confidence 852 45789999999976532110 01112367889999999 99999999999976553
Q ss_pred CCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeec
Q 040421 321 DQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNR 368 (407)
Q Consensus 321 ~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~ 368 (407)
.+|+.++++|+.|..... .+...+..+..+||..+.+.++
T Consensus 199 -~~g~~~~~~gs~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
T cd07402 199 -WGGIPLLTAPSTCHQFAP-------DLDDFALDALAPGYRALSLHED 238 (240)
T ss_pred -ECCEEEEEcCcceeeecC-------CCCcccccccCCCCcEEEEecC
Confidence 256778899988775321 2223333344578888877543
No 10
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.92 E-value=3e-24 Score=199.05 Aligned_cols=197 Identities=17% Similarity=0.240 Sum_probs=130.6
Q ss_pred cEEEEEecCCCCCCc----------hhh----HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccC
Q 040421 99 YTFGLIGDLGQTYYS----------NRT----LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQ 164 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~----------~~~----l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (407)
|||++++|+|..... ... ++.+.+. +||+||++||+++.... .....|+.+.+.++.+ .+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~--~~~~~~~~~~~~l~~l--~~ 74 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNA--RAEEALDAVLAILDRL--KG 74 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCc--hHHHHHHHHHHHHHhc--CC
Confidence 799999999955321 122 3333333 79999999999964321 1124455555555554 48
Q ss_pred CeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEecccc------------------
Q 040421 165 PWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSA------------------ 226 (407)
Q Consensus 165 P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~------------------ 226 (407)
|+++++||||..... ..+.. .... ...+..||+|++++++||+||+...
T Consensus 75 p~~~v~GNHD~~~~~--------~~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~ 141 (267)
T cd07396 75 PVHHVLGNHDLYNPS--------REYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDN 141 (267)
T ss_pred CEEEecCcccccccc--------Hhhhh-cccc----cCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHh
Confidence 999999999985211 00100 0000 1134569999999999999999531
Q ss_pred --------------C--CCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhC-CCcE
Q 040421 227 --------------F--GKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEY-KVDV 289 (407)
Q Consensus 227 --------------~--~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdl 289 (407)
+ ....+|++||+++|+++.. +..++||++|+|++...... ......++.+.++++++ +|++
T Consensus 142 ~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~-~~~~viV~~Hhp~~~~~~~~-~~~~~~~~~~~~ll~~~~~V~~ 219 (267)
T cd07396 142 SNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADA-NGEKVIIFSHFPLHPESTSP-HGLLWNHEEVLSILRAYGCVKA 219 (267)
T ss_pred chhhhhccCccceeccCcCCHHHHHHHHHHHHHHHh-cCCeEEEEEeccCCCCCCCc-cccccCHHHHHHHHHhCCCEEE
Confidence 0 1247899999999997532 33578999999987654311 11112256788999996 8999
Q ss_pred EEeccccccccccccccceeeccCCcccccCCCCCceEEEeCCCCC
Q 040421 290 VFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGN 335 (407)
Q Consensus 290 vl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~ 335 (407)
+|+||+|.+.... .+|+.|+++|+-..
T Consensus 220 v~~GH~H~~~~~~-------------------~~gi~~~~~~a~~~ 246 (267)
T cd07396 220 CISGHDHEGGYAQ-------------------RHGIHFLTLEGMVE 246 (267)
T ss_pred EEcCCcCCCCccc-------------------cCCeeEEEechhhc
Confidence 9999999987543 36778888887554
No 11
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.90 E-value=2.4e-22 Score=187.25 Aligned_cols=238 Identities=13% Similarity=0.133 Sum_probs=143.4
Q ss_pred EEcCCCCCCCCCcEEEEEecCCCCCC---------chh----hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHH
Q 040421 87 FTTPPGVGPDVPYTFGLIGDLGQTYY---------SNR----TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTW 153 (407)
Q Consensus 87 F~T~p~~~~~~~~~f~~~gD~~~~~~---------~~~----~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~ 153 (407)
.+|.+.. ..++||+.++|+|.... ... +++.+.+...+|||||++||++... ..+.++.+
T Consensus 5 ~~~~~~~--~~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~-----~~~~~~~~ 77 (275)
T PRK11148 5 LTLPLAG--EARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDH-----SSEAYQHF 77 (275)
T ss_pred cccccCC--CCCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCC-----CHHHHHHH
Confidence 4555543 36899999999996321 112 2333433323799999999999632 13455666
Q ss_pred HHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC---C-C
Q 040421 154 GRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF---G-K 229 (407)
Q Consensus 154 ~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~---~-~ 229 (407)
.+.++.+ .+|+++++||||... .+...+. ..+ ....++.+..++++||+|||.... + .
T Consensus 78 ~~~l~~l--~~Pv~~v~GNHD~~~-----------~~~~~~~--~~~---~~~~~~~~~~~~~~~i~Lds~~~g~~~G~l 139 (275)
T PRK11148 78 AEGIAPL--RKPCVWLPGNHDFQP-----------AMYSALQ--DAG---ISPAKHVLIGEHWQILLLDSQVFGVPHGEL 139 (275)
T ss_pred HHHHhhc--CCcEEEeCCCCCChH-----------HHHHHHh--hcC---CCccceEEecCCEEEEEecCCCCCCcCCEe
Confidence 6666665 479999999999831 1111111 000 111233344456999999995421 1 3
Q ss_pred ChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCC-CCCChhHHHHHHHHHHhC-CCcEEEeccccccccccccccc
Q 040421 230 YTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHH-YMEGEPMRVLYEPWFVEY-KVDVVFAAHVHAYERSERMSNI 307 (407)
Q Consensus 230 ~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~-~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~~~~~~ 307 (407)
..+|++||+++|+++ +.+..||++|||++..+... ......-.+.|.++++++ +|+++|+||+|......
T Consensus 140 ~~~ql~wL~~~L~~~---~~~~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~~----- 211 (275)
T PRK11148 140 SEYQLEWLERKLADA---PERHTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDLD----- 211 (275)
T ss_pred CHHHHHHHHHHHhhC---CCCCeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhce-----
Confidence 579999999999874 22356666776554433211 011112346889999998 89999999999854332
Q ss_pred eeeccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEc
Q 040421 308 AYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRN 378 (407)
Q Consensus 308 ~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~ 378 (407)
.+|+.++++++.+..... ..+.+ ......+||..+++.+++.+..+..+-
T Consensus 212 --------------~~gi~~~~~ps~~~q~~~------~~~~~-~~~~~~~g~~~~~l~~~g~~~~~~~~~ 261 (275)
T PRK11148 212 --------------WNGRRLLATPSTCVQFKP------HCTNF-TLDTVAPGWRELELHADGSLETEVHRL 261 (275)
T ss_pred --------------ECCEEEEEcCCCcCCcCC------CCCcc-ccccCCCcEEEEEEcCCCcEEEEEEEc
Confidence 256667777766643211 01111 112234699999996665566555543
No 12
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.89 E-value=2.3e-22 Score=189.12 Aligned_cols=283 Identities=18% Similarity=0.226 Sum_probs=187.7
Q ss_pred eeccCCCCCcEEEEEEcCC-------CCCCCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEE
Q 040421 3 ITQGDHEGKGVIVSWVTPD-------EPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYE 75 (407)
Q Consensus 3 l~~g~~~~~~~~v~W~t~~-------~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~ 75 (407)
++.|++. ..-.|.|..-+ .+....++++++++..+.+..++... .....+.+++.+.||+|++.|+||
T Consensus 43 VaSGDp~-~~svviWTRl~P~p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a----~p~~dhtv~v~~~gL~P~~~yfYR 117 (522)
T COG3540 43 VASGDPT-ATSVVIWTRLDPEPLNGGRPVPVIWEVSTDENFSNIVRKGTVIA----SPELDHTVHVDLRGLSPDQDYFYR 117 (522)
T ss_pred cccCCCC-CCeEEEEEccCCccccCCCCcceEEEecCCccHHHHHhcCCccC----CcccCceEEEeccCCCCCceEEEE
Confidence 4567765 45566787653 14457888888887554443343322 224678999999999999999999
Q ss_pred eCcC-CceeeEEEEcCCCCCCCCCcEEEEEecC---CCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCC-----
Q 040421 76 VGVG-NATRQFSFTTPPGVGPDVPYTFGLIGDL---GQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHD----- 146 (407)
Q Consensus 76 v~~~-~~s~~~~F~T~p~~~~~~~~~f~~~gD~---~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~----- 146 (407)
+..+ ..|+.++|+|+|..+ ..++|+.+||. +.+.+...+.+.|.+. +|||+||+||.+|+++.....
T Consensus 118 f~~~~~~spvGrtrTapa~~--~~i~~~~fa~ascQ~~~~gy~~aY~~ma~~--~~D~viH~GDyIYeyg~~~~~~~~~~ 193 (522)
T COG3540 118 FKAGDERSPVGRTRTAPAPG--RAIRFVWFADASCQGWEIGYMTAYKTMAKE--EPDFVIHLGDYIYEYGPIPDEVSLNS 193 (522)
T ss_pred EeeCCccccccccccCCCCC--CcchhhhhhhccccccccchhHHHHHHHhc--CCCEEEEcCCeeeccCCccccccccc
Confidence 9886 568999999999875 45666666555 4444444566667666 799999999999998853100
Q ss_pred -------------chhhhHHH---------HHHhhhhccCCeEEccCCCccccCCCCCCcc--c--------------cc
Q 040421 147 -------------NNRWDTWG---------RFIERNAAYQPWIWTVGNHEIDFAPQLGEAI--P--------------FK 188 (407)
Q Consensus 147 -------------~~~~~~~~---------~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~--~--------------~~ 188 (407)
-...+.|. ..++...+..||++.+.+||..++...+..+ + +.
T Consensus 194 ~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~nD~~~~~k~~~~r~a~A~q 273 (522)
T COG3540 194 WKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDENDSRYDEKDFVLRAAAARQ 273 (522)
T ss_pred ccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccccCCCCChHHHHHHHHHHHH
Confidence 01112222 2234455679999999999996432211111 1 11
Q ss_pred ccccccccCCCCCCC--CCCeEEEEecCc-EEEEEEeccccC----------------------CCChHHHHHHHHhccc
Q 040421 189 PFANRFHLPYRAPYS--TAPFWYSIRRAS-AHIIVMSCYSAF----------------------GKYTPQYKWLEKEFPK 243 (407)
Q Consensus 189 ~~~~~f~~P~~~~~~--~~~~~ysf~~g~-v~fi~Lds~~~~----------------------~~~~~Q~~WL~~~L~~ 243 (407)
+|.+ .||...... ....|-+|.||+ +.|.+||+...- -.+..|.+||+..|.+
T Consensus 274 AyyE--~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~~~~mlG~~QeqWLk~~L~~ 351 (522)
T COG3540 274 AYYE--HMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGSAATMLGEQQEQWLKRGLGA 351 (522)
T ss_pred HHHH--hCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCccccchhhHHHHHHHhhhhh
Confidence 2322 356543321 246889999999 589999984210 1367899999999998
Q ss_pred cCCCCCCeEEEEeeccccc----cCC--CC-------CCCChhHHHHHHHHHHhCCCc--EEEeccccccc
Q 040421 244 VNRSETPWLIVLMHCPLYN----SYV--HH-------YMEGEPMRVLYEPWFVEYKVD--VVFAAHVHAYE 299 (407)
Q Consensus 244 ~~~~~~~~~iv~~H~P~~~----~~~--~~-------~~~~~~~~~~l~~l~~~~~vd--lvl~GH~H~y~ 299 (407)
+++.|+|+..-.|+-- ... .. +.....-|+.|..++...++. ++|+|++|...
T Consensus 352 ---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V~LtgDvH~~w 419 (522)
T COG3540 352 ---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTVVLTGDVHYSW 419 (522)
T ss_pred ---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcEEEechhHHHH
Confidence 7889999999988721 110 00 011123588999999998775 89999999643
No 13
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.89 E-value=4.9e-22 Score=182.78 Aligned_cols=190 Identities=18% Similarity=0.240 Sum_probs=120.9
Q ss_pred EEEEecCCCCCCchhh-------HHHhhhCCCCCceEEEcCCccccCCCC----CCCchhhhHHHHHHhhhhc--cCCeE
Q 040421 101 FGLIGDLGQTYYSNRT-------LTHYELNPIKGQTVLFVGDLSYADDYP----FHDNNRWDTWGRFIERNAA--YQPWI 167 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~-------l~~~~~~~~~~d~vl~~GD~~y~~~~~----~~~~~~~~~~~~~~~~~~~--~~P~~ 167 (407)
|+.++|+|.+....+. +...++. .+||+||++||++...... ......|+.|++.+..... ..|++
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~-~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDV-IKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWF 80 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHh-hCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEE
Confidence 7889999987532111 1222333 3899999999999643211 1124567777777655432 58999
Q ss_pred EccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEE--EecCcEEEEEEecccc----------CCCChHHHH
Q 040421 168 WTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYS--IRRASAHIIVMSCYSA----------FGKYTPQYK 235 (407)
Q Consensus 168 ~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ys--f~~g~v~fi~Lds~~~----------~~~~~~Q~~ 235 (407)
.++||||......... ....|.+...... ....+|. +..|+++||+|||... ....++|++
T Consensus 81 ~v~GNHD~~~~~~~~~--~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~l~~~ql~ 153 (256)
T cd07401 81 DIRGNHDLFNIPSLDS--ENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGSLDKKLLD 153 (256)
T ss_pred EeCCCCCcCCCCCccc--hhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCCceeccCCHHHHH
Confidence 9999999942211111 1111211111110 0112333 3358999999999632 123589999
Q ss_pred HHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccccc
Q 040421 236 WLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERM 304 (407)
Q Consensus 236 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~ 304 (407)
||+++|+++ .+.+++||++|+|++...... ....+ .+.++|++++|+++||||.|.+++..|+
T Consensus 154 wL~~~L~~~--~~~~~~IV~~HhP~~~~~~~~---~~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p~ 216 (256)
T cd07401 154 RLEKELEKS--TNSNYTIWFGHYPTSTIISPS---AKSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEPV 216 (256)
T ss_pred HHHHHHHhc--ccCCeEEEEEcccchhccCCC---cchhH-HHHHHHHhcCCcEEEeCCccCCCcceee
Confidence 999999875 344689999999986533211 11222 3899999999999999999999997775
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.85 E-value=6.3e-21 Score=170.72 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=108.7
Q ss_pred cEEEEEecCCCCCCc-h----hhHHHhhhCC--CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-ccCCeEEcc
Q 040421 99 YTFGLIGDLGQTYYS-N----RTLTHYELNP--IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-AYQPWIWTV 170 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~-~----~~l~~~~~~~--~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~~ 170 (407)
|||++++|+|..... . ..++.+++.. .+||+||++||+++... ...+|+.+.+.++.+. ..+|+++++
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~----~~~~~~~~~~~~~~l~~~~~p~~~~~ 76 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGD----NDAEWEAADKAFARLDKAGIPYSVLA 76 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEC
Confidence 699999999986432 1 1222232211 37999999999996432 1467888888888876 569999999
Q ss_pred CCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCC
Q 040421 171 GNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETP 250 (407)
Q Consensus 171 GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~ 250 (407)
||||. ++.+|+ ....+|++||++.|++. +.+
T Consensus 77 GNHD~------------------------------------------~~~ld~----~~~~~ql~WL~~~L~~~---~~~ 107 (214)
T cd07399 77 GNHDL------------------------------------------VLALEF----GPRDEVLQWANEVLKKH---PDR 107 (214)
T ss_pred CCCcc------------------------------------------hhhCCC----CCCHHHHHHHHHHHHHC---CCC
Confidence 99993 222332 12479999999999974 335
Q ss_pred eEEEEeeccccccCCCCCCC-----ChhHHHHHHHHHHhC-CCcEEEecccccccccc
Q 040421 251 WLIVLMHCPLYNSYVHHYME-----GEPMRVLYEPWFVEY-KVDVVFAAHVHAYERSE 302 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~~~~~-----~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~r~~ 302 (407)
++||++|||++......... ....++.|.++++++ +|+++|+||.|.+.+..
T Consensus 108 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred CEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 79999999998655322111 123456788999999 79999999999998775
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.81 E-value=1.7e-19 Score=170.06 Aligned_cols=195 Identities=19% Similarity=0.211 Sum_probs=123.0
Q ss_pred EEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCch----hhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 103 LIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNN----RWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 103 ~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~----~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
-+|+.++.... ..+++.+.+...+|||||++||++..+........ .+..+.+.++.....+|+++++||||.
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD~ 121 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHDS 121 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCCC
Confidence 36777654431 23444454443489999999999976543211111 234455666666678999999999998
Q ss_pred ccCCCCCC----cccccccccccc--cCCCCC-CCCCCeEEEEe-cCcEEEEEEeccccC-----------CCChHHHHH
Q 040421 176 DFAPQLGE----AIPFKPFANRFH--LPYRAP-YSTAPFWYSIR-RASAHIIVMSCYSAF-----------GKYTPQYKW 236 (407)
Q Consensus 176 ~~~~~~~~----~~~~~~~~~~f~--~P~~~~-~~~~~~~ysf~-~g~v~fi~Lds~~~~-----------~~~~~Q~~W 236 (407)
........ ...+..+...|. +|.... ....+.||++. .+++++|+|||.... .....|++|
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~W 201 (296)
T cd00842 122 YPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQW 201 (296)
T ss_pred CcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHH
Confidence 53211110 111111222222 232111 11245789988 789999999996321 123689999
Q ss_pred HHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCC--CcEEEeccccccccc
Q 040421 237 LEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYK--VDVVFAAHVHAYERS 301 (407)
Q Consensus 237 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y~r~ 301 (407)
|+++|+++.+ +...++|++|+|+....... .....+.|.+|+++|. |.++|+||+|..+-.
T Consensus 202 L~~~L~~a~~-~~~~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 202 LEDELQEAEQ-AGEKVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHHHHH-CCCeEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 9999998642 23467889999997644321 1345678999999997 778999999986544
No 16
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.75 E-value=1e-17 Score=153.34 Aligned_cols=168 Identities=20% Similarity=0.251 Sum_probs=106.2
Q ss_pred HhhhCCCCCceEEEcCCccccCCCCCCCchhhhH----HHHHHhhhhccCCeEEccCCCccccCCCCCCccccccccccc
Q 040421 119 HYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDT----WGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRF 194 (407)
Q Consensus 119 ~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f 194 (407)
.+.+. .+||+||++||++.... .....+|.+ |.+.+..+....|++.++||||+.+..... ......|.+.|
T Consensus 39 ~~~~~-l~PD~vv~lGDL~d~G~--~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~-~~~~~rf~~~F 114 (257)
T cd08163 39 YMQKQ-LKPDSTIFLGDLFDGGR--DWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVV-LPVRQRFEKYF 114 (257)
T ss_pred HHHHh-cCCCEEEEecccccCCe--eCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCC-HHHHHHHHHHh
Confidence 34444 38999999999986422 112344533 333333333347999999999985432110 11123344444
Q ss_pred ccCCCCCCCCCCeEEEEecCcEEEEEEeccccC-----CCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCC
Q 040421 195 HLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF-----GKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYM 269 (407)
Q Consensus 195 ~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~ 269 (407)
. ..++++++|+++||+|||.... .....|.+||++.|+... ....+||++|+|+|......++
T Consensus 115 g----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~--~~~p~ILl~H~Plyr~~~~~cg 182 (257)
T cd08163 115 G----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKV--KSKPRILLTHVPLYRPPNTSCG 182 (257)
T ss_pred C----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccC--CCCcEEEEeccccccCCCCCCC
Confidence 2 2358899999999999996321 134679999999988642 3346899999999865432211
Q ss_pred ---C---------Chh----H-HHHHHHHHHhCCCcEEEecccccccccc
Q 040421 270 ---E---------GEP----M-RVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 270 ---~---------~~~----~-~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
+ +.. + .+.-..||++.+..+||+||+|.|-.+.
T Consensus 183 ~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 183 PLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred CccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 0 000 1 1233467888899999999999987664
No 17
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.74 E-value=6.4e-19 Score=151.93 Aligned_cols=190 Identities=20% Similarity=0.200 Sum_probs=97.9
Q ss_pred cEEEEEecCCCCCCch----hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHH-HHHhhhhccCCeEEccCCC
Q 040421 99 YTFGLIGDLGQTYYSN----RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWG-RFIERNAAYQPWIWTVGNH 173 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~----~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~P~~~~~GNH 173 (407)
|||+++||+|...... ..+...... .++|+||++||+++.... ...+.... ..........|+++++|||
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~-~~~d~ii~~GD~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~GNH 75 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAE-NKPDFIIFLGDLVDGGNP----SEEWRAQFWFFIRLLNPKIPVYFILGNH 75 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHH-TTTSEEEEESTSSSSSSH----HHHHHHHHHHHHHHHHTTTTEEEEE-TT
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhcc-CCCCEEEeeccccccccc----cccchhhhccchhhhhcccccccccccc
Confidence 6999999999876433 223333333 389999999999976431 11111111 1233345678999999999
Q ss_pred ccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCC---hHHHHHHHHhccccCCCCCC
Q 040421 174 EIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKY---TPQYKWLEKEFPKVNRSETP 250 (407)
Q Consensus 174 D~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~---~~Q~~WL~~~L~~~~~~~~~ 250 (407)
|+.................. ..........+........................ ..++.|+...++. ...+
T Consensus 76 D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 150 (200)
T PF00149_consen 76 DYYSGNSFYGFYDYQFEDYY--GNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWWLWLLLLLEA---KNDD 150 (200)
T ss_dssp SSHHHHHHHHHHHHHHSSEE--ECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHHHHHHHHHHE---EEES
T ss_pred ccceeccccccccccccccc--cccccccccCcceeeecccccccccccccccccccccchhccccccccccc---cccc
Confidence 99521100000000000000 00000000000001111111222222111111111 2233344344333 4567
Q ss_pred eEEEEeeccccccCCCCCC--CChhHHHHHHHHHHhCCCcEEEecccccc
Q 040421 251 WLIVLMHCPLYNSYVHHYM--EGEPMRVLYEPWFVEYKVDVVFAAHVHAY 298 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~~~~--~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 298 (407)
++||++|+|+++....... .....++.+..++.+++|+++|+||+|.|
T Consensus 151 ~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 151 PVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 9999999999876643210 11346778899999999999999999986
No 18
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.70 E-value=1.8e-16 Score=140.70 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=98.6
Q ss_pred CcEEEEEecCCCCCCc------------hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-ccC
Q 040421 98 PYTFGLIGDLGQTYYS------------NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-AYQ 164 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~~------------~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (407)
.|||++++|+|..... ...+.++++. .+||+||++||+++..... ...+..+.++++.+. ..+
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vv~~GDl~~~~~~~---~~~~~~~~~~~~~l~~~~~ 77 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDA-EKPDLVVLTGDLITGENTN---DNSTSALDKAVSPMIDRKI 77 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhh-cCCCEEEECCccccCCCCc---hHHHHHHHHHHHHHHHcCC
Confidence 6899999999986532 1223344444 4899999999999764321 113445555555554 368
Q ss_pred CeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhcccc
Q 040421 165 PWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKV 244 (407)
Q Consensus 165 P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~ 244 (407)
|+++++||||.. . .....|++||+++|++.
T Consensus 78 p~~~~~GNHD~~-------------------------------------------------g-~l~~~ql~wL~~~l~~~ 107 (199)
T cd07383 78 PWAATFGNHDGY-------------------------------------------------D-WIRPSQIEWFKETSAAL 107 (199)
T ss_pred CEEEECccCCCC-------------------------------------------------C-CCCHHHHHHHHHHHHHH
Confidence 999999999910 0 12468999999999885
Q ss_pred C--CCCCCeEEEEeeccccccCCCC---------CCC---ChhHHHHHH-HHHHhCCCcEEEecccccccccc
Q 040421 245 N--RSETPWLIVLMHCPLYNSYVHH---------YME---GEPMRVLYE-PWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 245 ~--~~~~~~~iv~~H~P~~~~~~~~---------~~~---~~~~~~~l~-~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
. +....+.++++|+|+....... ..+ .......+. .+.+..+|+++|+||+|.++...
T Consensus 108 ~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH~H~~~~~~ 180 (199)
T cd07383 108 KKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGHDHGNDFCG 180 (199)
T ss_pred hhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCCCCCcceec
Confidence 2 2244589999999986542210 001 011222344 44466799999999999987654
No 19
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.69 E-value=1.7e-16 Score=143.95 Aligned_cols=168 Identities=16% Similarity=0.162 Sum_probs=102.0
Q ss_pred CCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCC
Q 040421 126 KGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTA 205 (407)
Q Consensus 126 ~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~ 205 (407)
+||+||++||++.... .......++.++.+ ..|+++|+||||+. ... ...+.+.+ +..+. .-
T Consensus 41 ~~D~viiaGDl~~~~~-----~~~~~~~l~~l~~l--~~~v~~V~GNHD~~-~~~------~~~~~~~l--~~~~~--~~ 102 (232)
T cd07393 41 PEDIVLIPGDISWAMK-----LEEAKLDLAWIDAL--PGTKVLLKGNHDYW-WGS------ASKLRKAL--EESRL--AL 102 (232)
T ss_pred CCCEEEEcCCCccCCC-----hHHHHHHHHHHHhC--CCCeEEEeCCcccc-CCC------HHHHHHHH--HhcCe--EE
Confidence 8999999999984321 11222233334433 34889999999983 111 01111111 11000 00
Q ss_pred CeEEEEecCcEEEEEEeccc----cC-------------CCChHHHHHHHHhccccCCC-CCCeEEEEeeccccccCCCC
Q 040421 206 PFWYSIRRASAHIIVMSCYS----AF-------------GKYTPQYKWLEKEFPKVNRS-ETPWLIVLMHCPLYNSYVHH 267 (407)
Q Consensus 206 ~~~ysf~~g~v~fi~Lds~~----~~-------------~~~~~Q~~WL~~~L~~~~~~-~~~~~iv~~H~P~~~~~~~~ 267 (407)
....++.++++.|++++... .+ .....|+.||++.|+++... ...++|+++|+|++.....
T Consensus 103 ~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~- 181 (232)
T cd07393 103 LFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD- 181 (232)
T ss_pred eccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC-
Confidence 01234556789999886311 10 01256899999999875322 2247999999998764321
Q ss_pred CCCChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEEeCCC
Q 040421 268 YMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYITIGDG 333 (407)
Q Consensus 268 ~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~g 333 (407)
.+.+..++++++++++|+||+|..++..|+... .+|+.|.++.++
T Consensus 182 -------~~~~~~~~~~~~v~~vl~GH~H~~~~~~~~~~~--------------~~gi~~~~~~~~ 226 (232)
T cd07393 182 -------DSPISKLIEEYGVDICVYGHLHGVGRDRAINGE--------------RGGIRYQLVSAD 226 (232)
T ss_pred -------HHHHHHHHHHcCCCEEEECCCCCCcccccccce--------------ECCEEEEEEcch
Confidence 135678889999999999999999998876432 256667766654
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.66 E-value=1.2e-15 Score=133.88 Aligned_cols=167 Identities=11% Similarity=0.037 Sum_probs=100.0
Q ss_pred EEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCCC
Q 040421 101 FGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQ 180 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~ 180 (407)
|+++||+|.+...... ..+ +. .++|+||++||++.... ......+ +.++. ...|+++++||||.....
T Consensus 1 i~~~sD~H~~~~~~~~-~~~-~~-~~~D~vv~~GDl~~~~~-----~~~~~~~-~~l~~--~~~p~~~v~GNHD~~~~~- 68 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IIL-KA-EEADAVIVAGDITNFGG-----KEAAVEI-NLLLA--IGVPVLAVPGNCDTPEIL- 68 (188)
T ss_pred CEEEEecCCCHHHHHH-HHh-hc-cCCCEEEECCCccCcCC-----HHHHHHH-HHHHh--cCCCEEEEcCCCCCHHHH-
Confidence 5789999986532222 222 33 38999999999996421 1122222 33333 357999999999974110
Q ss_pred CCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEecccc------CCCChHHHHHHHHhccccCCCCCCeEEE
Q 040421 181 LGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSA------FGKYTPQYKWLEKEFPKVNRSETPWLIV 254 (407)
Q Consensus 181 ~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~------~~~~~~Q~~WL~~~L~~~~~~~~~~~iv 254 (407)
......... ..+ ..+.+++++|+++++... .....+|++|+ +.|+. ...+.+|+
T Consensus 69 -------~~~~~~~~~-------~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~l~~---~~~~~~il 128 (188)
T cd07392 69 -------GLLTSAGLN-------LHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GRLNN---LLAKNLIL 128 (188)
T ss_pred -------HhhhcCcEe-------cCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hhhhc---cCCCCeEE
Confidence 000000000 011 234567899999987421 12346789998 44443 33457899
Q ss_pred EeeccccccCCCCCCCC-hhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 255 LMHCPLYNSYVHHYMEG-EPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 255 ~~H~P~~~~~~~~~~~~-~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
++|+|++.......... ..-.+.+..++++++++++|+||.|.-.
T Consensus 129 v~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 129 VTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred EECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 99999976311110101 1123578888999999999999999754
No 21
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.66 E-value=1.4e-15 Score=146.58 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=71.4
Q ss_pred CCeEEEEe-cCcEEEEEEeccccC-----CCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCC-----CCChh
Q 040421 205 APFWYSIR-RASAHIIVMSCYSAF-----GKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHY-----MEGEP 273 (407)
Q Consensus 205 ~~~~ysf~-~g~v~fi~Lds~~~~-----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~-----~~~~~ 273 (407)
+..||+|+ .++++||+|||.... ...++|++||+++|++ .+.+++||++|||++....... .....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~---a~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRA---SSDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhc---CCCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999996431 2368999999999997 3446899999999987543110 01112
Q ss_pred HHHHHHHHHHhC-CCcEEEeccccccccc
Q 040421 274 MRVLYEPWFVEY-KVDVVFAAHVHAYERS 301 (407)
Q Consensus 274 ~~~~l~~l~~~~-~vdlvl~GH~H~y~r~ 301 (407)
..++|.++|++| +|.++||||.|.-...
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 346899999998 8999999999976543
No 22
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.64 E-value=4.3e-15 Score=135.59 Aligned_cols=176 Identities=14% Similarity=0.157 Sum_probs=103.1
Q ss_pred EEEEEecCCCCCCc---hhhHHH----hhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCC
Q 040421 100 TFGLIGDLGQTYYS---NRTLTH----YELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGN 172 (407)
Q Consensus 100 ~f~~~gD~~~~~~~---~~~l~~----~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GN 172 (407)
||++++|.|..... ...+++ +.+. ++|+||++||++... .....+++.+..+ ...|+++++||
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~--~~d~vv~~GDl~~~~-------~~~~~~~~~l~~~-~~~pv~~v~GN 70 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ--KIDHLHIAGDISNDF-------QRSLPFIEKLQEL-KGIKVTFNAGN 70 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEECCccccch-------hhHHHHHHHHHHh-cCCcEEEECCC
Confidence 68999999975322 222222 3333 799999999999421 1122334433332 35899999999
Q ss_pred CccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccC-------------------------
Q 040421 173 HEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAF------------------------- 227 (407)
Q Consensus 173 HD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~------------------------- 227 (407)
||+..... +..+...+. + ....+.++.+..++++|++++...++
T Consensus 71 HD~~~~~~------~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~ 139 (239)
T TIGR03729 71 HDMLKDLT------YEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIK 139 (239)
T ss_pred CCCCCCCC------HHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccC
Confidence 99841110 011111110 0 00112233344467888888842111
Q ss_pred -C-----CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCC------CCCCC-C-hhHHHHHHHHHHhCCCcEEEec
Q 040421 228 -G-----KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYV------HHYME-G-EPMRVLYEPWFVEYKVDVVFAA 293 (407)
Q Consensus 228 -~-----~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~------~~~~~-~-~~~~~~l~~l~~~~~vdlvl~G 293 (407)
. ...+|++||++.|+++. .+.+||++|||+..... ..+.. . ......|.+++++++++++|+|
T Consensus 140 ~~~~~~~~~~~~l~~l~~~l~~~~---~~~~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~~v~~~i~G 216 (239)
T TIGR03729 140 RPMSDPERTAIVLKQLKKQLNQLD---NKQVIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFGQLLVKYEIKDVIFG 216 (239)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcC---CCCEEEEEcccchHHHhcCCCCCcchhhhhhccChHHHHHHHHHhCCCEEEEC
Confidence 0 12578999999998742 24589999999855221 11110 0 1113678899999999999999
Q ss_pred cccccc
Q 040421 294 HVHAYE 299 (407)
Q Consensus 294 H~H~y~ 299 (407)
|.|.-.
T Consensus 217 H~H~~~ 222 (239)
T TIGR03729 217 HLHRRF 222 (239)
T ss_pred CccCCC
Confidence 999764
No 23
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.59 E-value=1.1e-14 Score=131.52 Aligned_cols=198 Identities=15% Similarity=0.060 Sum_probs=109.5
Q ss_pred CcEEEEEecCCCCCCch-----hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCC
Q 040421 98 PYTFGLIGDLGQTYYSN-----RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGN 172 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~~~-----~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GN 172 (407)
++||++++|+|...... +.++.+.+ .+||+||++||+++.... .. +.+.+.++.+....|+++++||
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~--~~~d~vl~~GD~~~~~~~----~~--~~~~~~l~~l~~~~~v~~v~GN 72 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINA--LKPDLVVLTGDLVDGSVD----VL--ELLLELLKKLKAPLGVYAVLGN 72 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhc--cCCCEEEEcCcccCCcch----hh--HHHHHHHhccCCCCCEEEECCC
Confidence 47999999999875421 22233333 389999999999965321 11 3455666666667899999999
Q ss_pred CccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeE
Q 040421 173 HEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWL 252 (407)
Q Consensus 173 HD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~ 252 (407)
||+...... .+........+. ...+....++.++..+..+-.. .......++.+.++.. .+.++.
T Consensus 73 HD~~~~~~~----~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~----~~~~~~~~~~~~~~~~--~~~~~~ 137 (223)
T cd07385 73 HDYYSGDEE----NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVD----DGLGRRPDLEKALKGL--DEDDPN 137 (223)
T ss_pred cccccCchH----HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEecc----CccccCCCHHHHHhCC--CCCCCE
Confidence 998532110 000010000010 0122344555555433333211 1112234566666653 344579
Q ss_pred EEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccccccccee---eccCCcccccCCCCCceEEE
Q 040421 253 IVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAY---NVTNALCSPVSDQSAPVYIT 329 (407)
Q Consensus 253 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~---~~~~g~~~~~~~~~g~~~iv 329 (407)
|++.|.|.+.. .+.+.++|++++||+|..|...|...... ....-....+..++..+||.
T Consensus 138 I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~Vs 200 (223)
T cd07385 138 ILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYDYGLYRKGGSQLYVS 200 (223)
T ss_pred EEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCcccceEEEECCEEEEEc
Confidence 99999985321 12567999999999999997766543210 00000001123345567777
Q ss_pred eCCCCC
Q 040421 330 IGDGGN 335 (407)
Q Consensus 330 ~G~gG~ 335 (407)
+|.|..
T Consensus 201 ~G~G~~ 206 (223)
T cd07385 201 RGLGTW 206 (223)
T ss_pred CCccCC
Confidence 777654
No 24
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.58 E-value=2.1e-14 Score=120.58 Aligned_cols=117 Identities=21% Similarity=0.183 Sum_probs=83.1
Q ss_pred EEEEecCCCCCCchhh----------HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhcc-CCeEEc
Q 040421 101 FGLIGDLGQTYYSNRT----------LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAY-QPWIWT 169 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~----------l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~ 169 (407)
|+.++|+|.+...... +.+..+. .++|+|+++||+++... ...|+.+.++++.+... .|++.+
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~-~~~d~vi~~GDl~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~v 74 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKA-LDPDLVVITGDLTQRGL-----PEEFEEAREFLDALPAPLEPVLVV 74 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhc-cCCCEEEECCCCCCCCC-----HHHHHHHHHHHHHccccCCcEEEe
Confidence 5789999987542111 1112223 48999999999997532 35666777777776544 699999
Q ss_pred cCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCC
Q 040421 170 VGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSET 249 (407)
Q Consensus 170 ~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~ 249 (407)
+||||.
T Consensus 75 ~GNHD~-------------------------------------------------------------------------- 80 (144)
T cd07400 75 PGNHDV-------------------------------------------------------------------------- 80 (144)
T ss_pred CCCCeE--------------------------------------------------------------------------
Confidence 999995
Q ss_pred CeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccc
Q 040421 250 PWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERS 301 (407)
Q Consensus 250 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 301 (407)
|+++|+|++...... ......++.+.+++++++++++|+||+|.....
T Consensus 81 ---iv~~Hhp~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~ 128 (144)
T cd07400 81 ---IVVLHHPLVPPPGSG-RERLLDAGDALKLLAEAGVDLVLHGHKHVPYVG 128 (144)
T ss_pred ---EEEecCCCCCCCccc-cccCCCHHHHHHHHHHcCCCEEEECCCCCcCee
Confidence 899999997654321 111114567899999999999999999987644
No 25
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.56 E-value=4.1e-14 Score=121.81 Aligned_cols=145 Identities=16% Similarity=0.251 Sum_probs=86.9
Q ss_pred EEEEecCCCCCCchhhH-HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCC
Q 040421 101 FGLIGDLGQTYYSNRTL-THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAP 179 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~l-~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~ 179 (407)
|+++||+|.+....... .+.... .++|+++++||+++... ...+...........|+++++||||+..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~-~~~d~li~~GDi~~~~~--------~~~~~~~~~~~~~~~~v~~v~GNHD~~~-- 69 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIA-PDADILVLAGDIGYLTD--------APRFAPLLLALKGFEPVIYVPGNHEFYV-- 69 (166)
T ss_pred CceEccccccCccccccccccCCC-CCCCEEEECCCCCCCcc--------hHHHHHHHHhhcCCccEEEeCCCcceEE--
Confidence 57899999875433222 122223 48999999999996421 1122222233345689999999999820
Q ss_pred CCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeecc
Q 040421 180 QLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCP 259 (407)
Q Consensus 180 ~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P 259 (407)
.+ .. ...||.+.. ...++.+|+.++++ +.+||++|||
T Consensus 70 ---------~~---~G---------~~~w~~~~~---------------~~~~~~~~~~~d~~-------~~~vv~~Hhp 106 (166)
T cd07404 70 ---------RI---IG---------TTLWSDISL---------------FGEAAARMRMNDFR-------GKTVVVTHHA 106 (166)
T ss_pred ---------EE---Ee---------eecccccCc---------------cchHHHHhCCCCCC-------CCEEEEeCCC
Confidence 00 00 011222211 12245556655554 3689999999
Q ss_pred ccccCCCC-CC---CChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 260 LYNSYVHH-YM---EGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 260 ~~~~~~~~-~~---~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
++...... .. .+...++.+..++++++|+++++||+|...
T Consensus 107 P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 107 PSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred CCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccc
Confidence 98754321 11 122345567788889999999999999864
No 26
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.54 E-value=1.4e-13 Score=129.66 Aligned_cols=180 Identities=18% Similarity=0.194 Sum_probs=110.2
Q ss_pred cEEEEEecCCCCC--C-chhhHHHh---hhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCC
Q 040421 99 YTFGLIGDLGQTY--Y-SNRTLTHY---ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGN 172 (407)
Q Consensus 99 ~~f~~~gD~~~~~--~-~~~~l~~~---~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GN 172 (407)
++|+.++|.|... . ....+.++ ++. .+||+||++||+++. + ....+....++++......|++++|||
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~-~~~D~~v~tGDl~~~-~----~~~~~~~~~~~l~~~~~~~~~~~vpGN 74 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQ-LKPDLLVVTGDLTND-G----EPEEYRRLKELLARLELPAPVIVVPGN 74 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhc-CCCCEEEEccCcCCC-C----CHHHHHHHHHHHhhccCCCceEeeCCC
Confidence 5899999999882 2 22233222 222 388999999999975 2 134455556666644456799999999
Q ss_pred CccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEec-CcEEEEEEeccccC----CCChHHHHHHHHhccccCCC
Q 040421 173 HEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRR-ASAHIIVMSCYSAF----GKYTPQYKWLEKEFPKVNRS 247 (407)
Q Consensus 173 HD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~-g~v~fi~Lds~~~~----~~~~~Q~~WL~~~L~~~~~~ 247 (407)
||..... ...+...+.... ..+-.... +.++++.+|+.... .....|+.||++.|++....
T Consensus 75 HD~~~~~-------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~q~~~l~~~l~~~~~~ 140 (301)
T COG1409 75 HDARVVN-------GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAEQLDWLEEALAAAPER 140 (301)
T ss_pred CcCCchH-------HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHHHHHHHHHHHHhCccc
Confidence 9985211 011111111110 01111112 67899999996431 24689999999999985322
Q ss_pred CCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCC--CcEEEecccccc
Q 040421 248 ETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYK--VDVVFAAHVHAY 298 (407)
Q Consensus 248 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y 298 (407)
....+|+++|||+.................+..++..++ |+++|+||.|.-
T Consensus 141 ~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 141 AKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred cCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 112457777777665443221111222345667788887 999999999976
No 27
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.52 E-value=2.2e-13 Score=130.15 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=64.0
Q ss_pred CCeEEEEe-cCcE--EEEEEecccc---------C--CCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCC-CC--
Q 040421 205 APFWYSIR-RASA--HIIVMSCYSA---------F--GKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYV-HH-- 267 (407)
Q Consensus 205 ~~~~ysf~-~g~v--~fi~Lds~~~---------~--~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~-~~-- 267 (407)
+..||+|+ .|++ ++|+||+... + ....+|++||+++|+.+. .+.+++|+++|+|+.+... ..
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~-a~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQ-ADGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCc-CCCceEEEEeCCCcccCCccchhh
Confidence 34599999 5845 9999998531 1 135899999999999863 2456788888888765221 10
Q ss_pred CC----------CChhHHHHHHHHHHhC-CCcEEEeccccc
Q 040421 268 YM----------EGEPMRVLYEPWFVEY-KVDVVFAAHVHA 297 (407)
Q Consensus 268 ~~----------~~~~~~~~l~~l~~~~-~vdlvl~GH~H~ 297 (407)
+. .+...-.+|..+|++| +|.++||||.|.
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHr 410 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHL 410 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCccc
Confidence 00 0111124789999999 688999999995
No 28
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.50 E-value=2.6e-13 Score=122.47 Aligned_cols=188 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred EEEEEecCCCCCCc------------hhhHHHhh---hCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-cc
Q 040421 100 TFGLIGDLGQTYYS------------NRTLTHYE---LNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-AY 163 (407)
Q Consensus 100 ~f~~~gD~~~~~~~------------~~~l~~~~---~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (407)
||++++|+|.+... ..+++++. .+ .++|+||++||++.... .....+..+.+.++.+. ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~i~~~GD~~~~~~---~~~~~~~~~~~~~~~~~~~~ 76 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIE-EKVDFVLIAGDLFDSNN---PSPEALELLIEALRRLKEAG 76 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHh-cCCCEEEECCcccCCCC---CCHHHHHHHHHHHHHHHHCC
Confidence 68999999987431 11233322 22 38999999999996532 12234555666666654 47
Q ss_pred CCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccc
Q 040421 164 QPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPK 243 (407)
Q Consensus 164 ~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~ 243 (407)
+|+++++||||...... .......+....... ............+..+++.|++++.... .....+.+++++.+.+
T Consensus 77 ~~v~~~~GNHD~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~g~~~~~~-~~~~~~~~~~~~~~~~ 152 (223)
T cd00840 77 IPVFIIAGNHDSPSRLG--ALSPLLALSGLHLVG-VEEDVLTPLLLPKGGTGVAIYGLPYLRR-SRLRDLLADAELRPRP 152 (223)
T ss_pred CCEEEecCCCCCccccc--cccchHhhCcEEEEc-ccCcceeEEEeccCCeEEEEEECCCCCH-HHHHHHHHHHHHHhhc
Confidence 89999999999853211 000000011100000 0000011122334455688888875322 1123344444555544
Q ss_pred cCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccc
Q 040421 244 VNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERS 301 (407)
Q Consensus 244 ~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 301 (407)
. .+..+.|+++|.|+.......... .......+...++|++++||.|..+..
T Consensus 153 ~--~~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 153 L--DPDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred c--CCCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 3 345579999999986543221100 123344566789999999999987643
No 29
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.50 E-value=5.9e-13 Score=118.84 Aligned_cols=175 Identities=9% Similarity=0.054 Sum_probs=101.0
Q ss_pred CCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc-cCCeEEccCCCcc
Q 040421 97 VPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA-YQPWIWTVGNHEI 175 (407)
Q Consensus 97 ~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~~GNHD~ 175 (407)
...|+++++|+|.+....+.+.+..++ .++|+||++||++.... ..+.+.++++.+.. ..|+++++||||.
T Consensus 3 ~~~kIl~iSDiHgn~~~le~l~~~~~~-~~~D~vv~~GDl~~~g~-------~~~~~~~~l~~l~~l~~pv~~V~GNhD~ 74 (224)
T cd07388 3 TVRYVLATSNPKGDLEALEKLVGLAPE-TGADAIVLIGNLLPKAA-------KSEDYAAFFRILGEAHLPTFYVPGPQDA 74 (224)
T ss_pred ceeEEEEEEecCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCCCC-------CHHHHHHHHHHHHhcCCceEEEcCCCCh
Confidence 357899999999754333333333333 38999999999996421 12233334443322 4799999999996
Q ss_pred ccCCCCCCcccccccccccccCCCCCCCCCCeEEEEec-CcEEEEEEeccccC--CCChHHH----HHHHH----hcccc
Q 040421 176 DFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRR-ASAHIIVMSCYSAF--GKYTPQY----KWLEK----EFPKV 244 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~-g~v~fi~Lds~~~~--~~~~~Q~----~WL~~----~L~~~ 244 (407)
....... ..|......|..- ...... ..+ |+++|+.|+..... ...++|. .||.+ .+..
T Consensus 75 ~v~~~l~-----~~~~~~~~~p~~~--~lh~~~--~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~~~~~~~~l~~~~~- 144 (224)
T cd07388 75 PLWEYLR-----EAYNAELVHPEIR--NVHETF--AFWRGPYLVAGVGGEIADEGEPEEHEALRYPAWVAEYRLKALWE- 144 (224)
T ss_pred HHHHHHH-----HHhcccccCccce--ecCCCe--EEecCCeEEEEecCCcCCCCCcCHHHHhhhhhhHHHHHHHHHHh-
Confidence 3100000 0111000112100 011122 233 66999999975432 2234442 56433 3333
Q ss_pred CCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccc
Q 040421 245 NRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVH 296 (407)
Q Consensus 245 ~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H 296 (407)
...+..|+++|+||+..+..+ .-.+.+..++++++..+++|||.|
T Consensus 145 --~~~~~~VLv~H~PP~g~g~~h-----~GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 145 --LKDYRKVFLFHTPPYHKGLNE-----QGSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred --CCCCCeEEEECCCCCCCCCCc-----cCHHHHHHHHHHhCCCEEEEcCCc
Confidence 233478999999999874222 123477789999999999999999
No 30
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.46 E-value=1.2e-12 Score=121.58 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCCcEEEEEecCCCCCC-chhhHHHh---hhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccC
Q 040421 96 DVPYTFGLIGDLGQTYY-SNRTLTHY---ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVG 171 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-~~~~l~~~---~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~G 171 (407)
..++||++++|+|.+.. ....++++ .+. .+||+|+++||+++.+. ...++.+.+.++.+.+..|+|+|+|
T Consensus 47 ~~~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~-~~pDlVli~GD~~d~~~-----~~~~~~~~~~L~~L~~~~pv~~V~G 120 (271)
T PRK11340 47 AAPFKILFLADLHYSRFVPLSLISDAIALGIE-QKPDLILLGGDYVLFDM-----PLNFSAFSDVLSPLAECAPTFACFG 120 (271)
T ss_pred CCCcEEEEEcccCCCCcCCHHHHHHHHHHHHh-cCCCEEEEccCcCCCCc-----cccHHHHHHHHHHHhhcCCEEEecC
Confidence 35799999999998632 22223322 222 38999999999985221 1234566777777776789999999
Q ss_pred CCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCc--EEEEEEeccccCCCChHHHHHHHHhccccCCCCC
Q 040421 172 NHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRAS--AHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSET 249 (407)
Q Consensus 172 NHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~--v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~ 249 (407)
|||+...... ...+.+.+. ..+..-..+....+..++ +.++.+|.... +... ..+.+++ .
T Consensus 121 NHD~~~~~~~-----~~~~~~~l~--~~gi~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~---~~~~~~~-----~ 182 (271)
T PRK11340 121 NHDRPVGTEK-----NHLIGETLK--SAGITVLFNQATVIATPNRQFELVGTGDLWA---GQCK---PPPASEA-----N 182 (271)
T ss_pred CCCcccCccc-----hHHHHHHHH--hcCcEEeeCCeEEEeeCCcEEEEEEecchhc---cCCC---hhHhcCC-----C
Confidence 9998421100 001111110 000011123344454443 66777763211 1111 1122222 2
Q ss_pred CeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccccc
Q 040421 250 PWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERM 304 (407)
Q Consensus 250 ~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~ 304 (407)
...|++.|.|-.- +.+.+.++||+||||+|.-|-..|.
T Consensus 183 ~~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 183 LPRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred CCeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 3689999999431 1234678999999999987766554
No 31
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.45 E-value=2.3e-13 Score=95.99 Aligned_cols=62 Identities=35% Similarity=0.634 Sum_probs=40.5
Q ss_pred CCceEEEeCCCCCCCCCcccCCCCCCCccceeeCcceEEEEEEeeccEEEEEEEEcCCCceeeeeeE
Q 040421 323 SAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREASFGHGILDVKNRTHAYFGWHRNQDDYAVEADSV 389 (407)
Q Consensus 323 ~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~~D~~ 389 (407)
++|||||+|+||+... .+..++|+|++++...+||++|++.|.++|.|+|+++.||+|+ |+|
T Consensus 1 kapVhiv~G~aG~~l~---~~~~~~~~wsa~r~~~~Gy~~l~v~N~T~l~~e~i~~~~g~v~--D~f 62 (62)
T PF14008_consen 1 KAPVHIVVGAAGNGLD---PFPYPPPEWSAFRDSEYGYGRLTVANATHLHWEFIRSDDGSVL--DEF 62 (62)
T ss_dssp TS-EEEEE--S-T-------B-SS--TTEEEEE---EEEEEEE-SSSEEEEEEEETTS-T-C--EE-
T ss_pred CCCEEEEECcCCCCcc---cccCCCCCeeeeeccccCEEEEEEEcCCeEEEEEEECCCCcEe--cCC
Confidence 4789999999999432 3556788999999999999999999999999999999999986 987
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.37 E-value=7.7e-12 Score=102.16 Aligned_cols=117 Identities=24% Similarity=0.271 Sum_probs=81.8
Q ss_pred EEEecCCCCCCchhhHH--HhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCC
Q 040421 102 GLIGDLGQTYYSNRTLT--HYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAP 179 (407)
Q Consensus 102 ~~~gD~~~~~~~~~~l~--~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~ 179 (407)
+++||+|.......... ...+. .++|+||++||+++... ...+..+...........|+++++||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~-~~~~~vi~~GD~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~GNHD----- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAA-EKPDFVLVLGDLVGDGP-----DPEEVLAAALALLLLLGIPVYVVPGNHD----- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcc-cCCCEEEECCcccCCCC-----CchHHHHHHHHHhhcCCCCEEEeCCCce-----
Confidence 36899998765433322 22233 48999999999997543 1223333223333446799999999999
Q ss_pred CCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeecc
Q 040421 180 QLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCP 259 (407)
Q Consensus 180 ~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P 259 (407)
|+++|.|
T Consensus 70 -------------------------------------------------------------------------i~~~H~~ 76 (131)
T cd00838 70 -------------------------------------------------------------------------ILLTHGP 76 (131)
T ss_pred -------------------------------------------------------------------------EEEeccC
Confidence 8999999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 260 LYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
++.............+..+..++.+.+++++|+||.|.+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 77 PYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred CCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 8776543222222246788889999999999999999999875
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.37 E-value=1.8e-10 Score=105.15 Aligned_cols=196 Identities=18% Similarity=0.231 Sum_probs=106.2
Q ss_pred CCCcEEEEEecCCCCCC-----------------c---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHH
Q 040421 96 DVPYTFGLIGDLGQTYY-----------------S---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGR 155 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-----------------~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~ 155 (407)
.+.|||+.++|+|.+.. . ..-++++++. ++||||+++||+++.... ...-..+.+
T Consensus 51 ~g~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~s-E~PDlVVfTGD~i~g~~t----~Da~~sl~k 125 (379)
T KOG1432|consen 51 DGTFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLAS-EKPDLVVFTGDNIFGHST----QDAATSLMK 125 (379)
T ss_pred CCceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhc-cCCCEEEEeCCccccccc----HhHHHHHHH
Confidence 47899999999998643 0 1224566666 499999999999976331 122233556
Q ss_pred HHhhh-hccCCeEEccCCCccccCCCCCCcccccccccccccCCC--------CCC--CCCCeEEEEe-cC---------
Q 040421 156 FIERN-AAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYR--------APY--STAPFWYSIR-RA--------- 214 (407)
Q Consensus 156 ~~~~~-~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~--------~~~--~~~~~~ysf~-~g--------- 214 (407)
.++|. ...+||.+++||||-...-.. .+ ...+.. .+|.. +.. ..+-..|... +|
T Consensus 126 AvaP~I~~~IPwA~~lGNHDdes~ltr-~q--l~~~i~--~lP~s~~~v~p~dg~~~~~~g~gnyn~~i~~~~ds~~~~~ 200 (379)
T KOG1432|consen 126 AVAPAIDRKIPWAAVLGNHDDESDLTR-LQ--LMKFIS--KLPYSLSQVNPPDGHMYIIDGFGNYNLQIEGAIDSELENK 200 (379)
T ss_pred HhhhHhhcCCCeEEEecccccccccCH-HH--HHHHHh--cCCCccccCCCcccceeeeecccceEEEeccCCCcccccC
Confidence 66654 467999999999997522100 00 000100 01111 100 0000111111 11
Q ss_pred -cEEEEEEecccc---------CC-CChHHHHHHHHhccc---cCCCCCC-eEEEEeecccc--ccCCCCC------CCC
Q 040421 215 -SAHIIVMSCYSA---------FG-KYTPQYKWLEKEFPK---VNRSETP-WLIVLMHCPLY--NSYVHHY------MEG 271 (407)
Q Consensus 215 -~v~fi~Lds~~~---------~~-~~~~Q~~WL~~~L~~---~~~~~~~-~~iv~~H~P~~--~~~~~~~------~~~ 271 (407)
-.-+++||+... |+ ....|..||+..-.. .+..-.| .-+++.|.|+- ..-.... .++
T Consensus 201 sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~~~~tp~~g~~~E~ 280 (379)
T KOG1432|consen 201 SVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLELESKTPLIGVFQEG 280 (379)
T ss_pred ceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhccCCCcccceeecc
Confidence 124567776432 11 136799999887622 1111122 46889999973 2222110 010
Q ss_pred ---hhHHHHHHHHHH-hCCCcEEEeccccccccc
Q 040421 272 ---EPMRVLYEPWFV-EYKVDVVFAAHVHAYERS 301 (407)
Q Consensus 272 ---~~~~~~l~~l~~-~~~vdlvl~GH~H~y~r~ 301 (407)
......+...|. ..+|++|++||+|.-.--
T Consensus 281 ~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC 314 (379)
T KOG1432|consen 281 VSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFC 314 (379)
T ss_pred ccccccccHHHHHHHhccCcceEEecccccccee
Confidence 112234556666 789999999999975443
No 34
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.30 E-value=1.6e-11 Score=104.17 Aligned_cols=154 Identities=20% Similarity=0.219 Sum_probs=89.0
Q ss_pred cEEEEEecCCCCCCchh-hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcccc
Q 040421 99 YTFGLIGDLGQTYYSNR-TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDF 177 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~-~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 177 (407)
+||+++||+|.+..... .++.+ + ++|+|+++||++.. .++.+.++.+ |++++.||||...
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~--~~d~vi~~GDi~~~-----------~~~~~~~~~~----~~~~v~GNHD~~~ 61 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--N--EPDFVIILGDIFDP-----------EEVLELLRDI----PVYVVRGNHDNWA 61 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--T--TESEEEEES-SCSH-----------HHHHHHHHHH----EEEEE--CCHSTH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--c--CCCEEEECCCchhH-----------HHHHHHHhcC----CEEEEeCCccccc
Confidence 68999999998644322 23323 2 79999999999831 3445555443 9999999999631
Q ss_pred CCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEee
Q 040421 178 APQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMH 257 (407)
Q Consensus 178 ~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H 257 (407)
+...... .. +.+.+.. .-....|+++|
T Consensus 62 ------------~~~~~~~---------~~-----------------------------~~~~~~~---~~~~~~i~~~H 88 (156)
T PF12850_consen 62 ------------FPNENDE---------EY-----------------------------LLDALRL---TIDGFKILLSH 88 (156)
T ss_dssp ------------HHSEECT---------CS-----------------------------SHSEEEE---EETTEEEEEES
T ss_pred ------------chhhhhc---------cc-----------------------------cccceee---eecCCeEEEEC
Confidence 1111000 00 1111111 11246888889
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEEeCCCCCCC
Q 040421 258 CPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQE 337 (407)
Q Consensus 258 ~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~ 337 (407)
.+++.... ..+.+..++...+++++++||.|..+... .+++.++..|+-+...
T Consensus 89 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------------------~~~~~~~~~Gs~~~~~ 141 (156)
T PF12850_consen 89 GHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK-------------------IGGIHVINPGSIGGPR 141 (156)
T ss_dssp STSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE-------------------ETTEEEEEE-GSSS-S
T ss_pred CCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE-------------------ECCEEEEECCcCCCCC
Confidence 87665321 12345677889999999999999977654 1456677777765432
Q ss_pred CCcccCCCCCCCccceeeCcceEEEEEEee
Q 040421 338 GLAKEMTEPQPRYSAYREASFGHGILDVKN 367 (407)
Q Consensus 338 ~~~~~~~~~~p~~~~~~~~~~Gf~~l~v~~ 367 (407)
. .. ..+|+++++.+
T Consensus 142 ~---------------~~-~~~~~i~~~~~ 155 (156)
T PF12850_consen 142 H---------------GD-QSGYAILDIED 155 (156)
T ss_dssp S---------------SS-SEEEEEEEETT
T ss_pred C---------------CC-CCEEEEEEEec
Confidence 1 01 36899998854
No 35
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.22 E-value=1.1e-10 Score=96.67 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=74.2
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCC
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAP 179 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~ 179 (407)
||+++||+|.... .... .++|+++++||++.... ...++.+.+.++.+.. .++++++||||...
T Consensus 1 ~i~~isD~H~~~~-------~~~~-~~~D~vi~~GD~~~~~~-----~~~~~~~~~~l~~~~~-~~~~~v~GNHD~~~-- 64 (135)
T cd07379 1 RFVCISDTHSRHR-------TISI-PDGDVLIHAGDLTERGT-----LEELQKFLDWLKSLPH-PHKIVIAGNHDLTL-- 64 (135)
T ss_pred CEEEEeCCCCCCC-------cCcC-CCCCEEEECCCCCCCCC-----HHHHHHHHHHHHhCCC-CeEEEEECCCCCcC--
Confidence 5899999997643 1222 38999999999985321 2333444555554321 23578999999720
Q ss_pred CCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeecc
Q 040421 180 QLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCP 259 (407)
Q Consensus 180 ~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P 259 (407)
. + . .+.|+++|.|
T Consensus 65 --------~----------------------------------------------------~-----~--~~~ilv~H~~ 77 (135)
T cd07379 65 --------D----------------------------------------------------P-----E--DTDILVTHGP 77 (135)
T ss_pred --------C----------------------------------------------------C-----C--CCEEEEECCC
Confidence 0 1 1 2568889999
Q ss_pred ccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 260 LYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
++............-.+.+..++++++++++|+||+|...
T Consensus 78 p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 78 PYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred CCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 8765432111011112456677888999999999999864
No 36
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=107.66 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred EEEcCCCCCCCCCcEEEEEecCCCCCCchh---hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc
Q 040421 86 SFTTPPGVGPDVPYTFGLIGDLGQTYYSNR---TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA 162 (407)
Q Consensus 86 ~F~T~p~~~~~~~~~f~~~gD~~~~~~~~~---~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~ 162 (407)
.-.++.......+++++.++|.|....... .+.++... .||+|+++||++... .......+.+.++++.+
T Consensus 32 ~i~~~~~~~~~~~~~iv~lSDlH~~~~~~~~~~~~~~i~~~--~~DlivltGD~~~~~-----~~~~~~~~~~~L~~L~~ 104 (284)
T COG1408 32 TILTPKLPASLQGLKIVQLSDLHSLPFREEKLALLIAIANE--LPDLIVLTGDYVDGD-----RPPGVAALALFLAKLKA 104 (284)
T ss_pred EeecCCCCcccCCeEEEEeehhhhchhhHHHHHHHHHHHhc--CCCEEEEEeeeecCC-----CCCCHHHHHHHHHhhhc
Confidence 334444444567899999999998754422 22233333 679999999999641 13456677888888888
Q ss_pred cCCeEEccCCCccc
Q 040421 163 YQPWIWTVGNHEID 176 (407)
Q Consensus 163 ~~P~~~~~GNHD~~ 176 (407)
..++++++||||+.
T Consensus 105 ~~gv~av~GNHd~~ 118 (284)
T COG1408 105 PLGVFAVLGNHDYG 118 (284)
T ss_pred cCCEEEEecccccc
Confidence 99999999999995
No 37
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.10 E-value=3.8e-10 Score=103.13 Aligned_cols=177 Identities=14% Similarity=0.084 Sum_probs=92.4
Q ss_pred cEEEEEecCCCCCCchh---hH-HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhcc-CCeEEccCCC
Q 040421 99 YTFGLIGDLGQTYYSNR---TL-THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAY-QPWIWTVGNH 173 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~---~l-~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~-~P~~~~~GNH 173 (407)
+|+++++|+|.+..... .+ +.+.....++|+|+++||++..-..............+.++.+... +|+++++|||
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~GNH 80 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMHGNR 80 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 47999999998754322 22 2222222389999999999953110000012223445566666544 8999999999
Q ss_pred ccccCCCCCCcccccccccccc---cCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCC
Q 040421 174 EIDFAPQLGEAIPFKPFANRFH---LPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETP 250 (407)
Q Consensus 174 D~~~~~~~~~~~~~~~~~~~f~---~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~ 250 (407)
|.... ..+.+... +| ....+++++.++++.-... +...+..++++.+.+...
T Consensus 81 D~~~~---------~~~~~~~g~~~l~---------~~~~~~~~g~~i~l~HGd~-~~~~d~~y~~~r~~~r~~------ 135 (241)
T PRK05340 81 DFLLG---------KRFAKAAGMTLLP---------DPSVIDLYGQRVLLLHGDT-LCTDDKAYQRFRRKVRNP------ 135 (241)
T ss_pred chhhh---------HHHHHhCCCEEeC---------CcEEEEECCEEEEEECCcc-cccCCHHHHHHHHHHhCH------
Confidence 97421 11111111 12 1234566777666654421 112334455555554431
Q ss_pred eEEEEeeccccccCCC---------------CCC-CChhHHHHHHHHHHhCCCcEEEecccccccc
Q 040421 251 WLIVLMHCPLYNSYVH---------------HYM-EGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~---------------~~~-~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r 300 (407)
+...++|.+++..... ... ......+.+.+++++++++++++||+|.-..
T Consensus 136 ~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~ 201 (241)
T PRK05340 136 WLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI 201 (241)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce
Confidence 2222233333211000 000 0001124577888999999999999997654
No 38
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=99.09 E-value=3.3e-10 Score=98.18 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=68.5
Q ss_pred CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhh---hccCCeEEccCCCccccCCCCCCcccccccccccccCCCCC
Q 040421 125 IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERN---AAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAP 201 (407)
Q Consensus 125 ~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~ 201 (407)
.+||+|+++||+++.... .....|.+..+.+..+ ...+|++.++||||.+..... ....-.++|.
T Consensus 41 l~PD~Vi~lGDL~D~G~~--~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~----~~~~~v~RF~------ 108 (195)
T cd08166 41 VQPDIVIFLGDLMDEGSI--ANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEED----PIESKIRRFE------ 108 (195)
T ss_pred cCCCEEEEeccccCCCCC--CCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCC----cCHHHHHHHH------
Confidence 489999999999976542 1233444433333333 235899999999999632100 0001112221
Q ss_pred CCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHH
Q 040421 202 YSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPW 281 (407)
Q Consensus 202 ~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l 281 (407)
.+| |+++|.|+..... ..+..+
T Consensus 109 -----~~F-------------------------------------------i~lsH~P~~~~~~----------~~~~~~ 130 (195)
T cd08166 109 -----KYF-------------------------------------------IMLSHVPLLAEGG----------QALKHV 130 (195)
T ss_pred -----Hhh-------------------------------------------eeeeccccccccc----------HHHHHH
Confidence 011 8999999876442 155678
Q ss_pred HHhCCCcEEEecccccccccc
Q 040421 282 FVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 282 ~~~~~vdlvl~GH~H~y~r~~ 302 (407)
+.+++++++|+||.|.+....
T Consensus 131 ~~~~~p~~Ifs~H~H~s~~~~ 151 (195)
T cd08166 131 VTDLDPDLIFSAHRHKSSIFM 151 (195)
T ss_pred HHhcCceEEEEcCccceeeEE
Confidence 889999999999999876653
No 39
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.08 E-value=2.5e-09 Score=96.91 Aligned_cols=164 Identities=16% Similarity=0.073 Sum_probs=98.1
Q ss_pred EEEEEecCCCCCCchhhHHHhh---hCCCCCceEEEcCCccccCCCCCC--------------CchhhhHHH--------
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYE---LNPIKGQTVLFVGDLSYADDYPFH--------------DNNRWDTWG-------- 154 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~---~~~~~~d~vl~~GD~~y~~~~~~~--------------~~~~~~~~~-------- 154 (407)
||++.++.+...........+. .. .+|||+|++||.+|.+..... ....-+.+.
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~-~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~ 79 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSE-EDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRS 79 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccc-cCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcC
Confidence 5788888877655444444443 23 389999999999999863210 001111121
Q ss_pred -HHHhhhhccCCeEEccCCCccccCCCCCCc-------------ccccccccccccCCCCCC--CCCCeEEEEecCcE-E
Q 040421 155 -RFIERNAAYQPWIWTVGNHEIDFAPQLGEA-------------IPFKPFANRFHLPYRAPY--STAPFWYSIRRASA-H 217 (407)
Q Consensus 155 -~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~-------------~~~~~~~~~f~~P~~~~~--~~~~~~ysf~~g~v-~ 217 (407)
..++.+.+.+|++.++.+||+..+...... .....|...+..+..... .....|+++.+|.. .
T Consensus 80 ~p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~ 159 (228)
T cd07389 80 DPDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVD 159 (228)
T ss_pred CHHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcce
Confidence 223456678999999999999643221100 011233333333322221 34568999999996 9
Q ss_pred EEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCC--CcEEEeccc
Q 040421 218 IIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYK--VDVVFAAHV 295 (407)
Q Consensus 218 fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~ 295 (407)
|++||+...- ..+......|+.+..++.+.+ -.++|||++
T Consensus 160 ~~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDv 201 (228)
T cd07389 160 LILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDV 201 (228)
T ss_pred EEEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHH
Confidence 9999985431 122233456667777655543 348999999
Q ss_pred ccccccc
Q 040421 296 HAYERSE 302 (407)
Q Consensus 296 H~y~r~~ 302 (407)
|...-..
T Consensus 202 H~~~~~~ 208 (228)
T cd07389 202 HLAEASD 208 (228)
T ss_pred HHHHHhh
Confidence 9766554
No 40
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.08 E-value=4.1e-09 Score=94.45 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=42.5
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcccc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDF 177 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 177 (407)
+||+++||.|..... ..+..+ +. .+||+||++||++.. . ..+.+.+..+ ..|+++++||||...
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l-~~-~~pD~Vl~~GDi~~~--------~--~~~~~~l~~l--~~p~~~V~GNHD~~~ 64 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKAL-HL-LQPDLVLFVGDFGNE--------S--VQLVRAISSL--PLPKAVILGNHDAWY 64 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHH-hc-cCCCEEEECCCCCcC--------h--HHHHHHHHhC--CCCeEEEcCCCcccc
Confidence 589999999976432 222333 33 389999999999732 1 1233333332 369999999999854
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.07 E-value=1.4e-09 Score=92.30 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
|++++||+|... ..++++.+...++|.|+++||++..... .. +....|++.++||||.
T Consensus 1 ~i~~isD~H~~~---~~~~~~~~~~~~~d~ii~~GD~~~~~~~----~~-----------~~~~~~~~~V~GNhD~ 58 (155)
T cd00841 1 KIGVISDTHGSL---ELLEKALELFGDVDLIIHAGDVLYPGPL----NE-----------LELKAPVIAVRGNCDG 58 (155)
T ss_pred CEEEEecCCCCH---HHHHHHHHHhcCCCEEEECCcccccccc----ch-----------hhcCCcEEEEeCCCCC
Confidence 589999999764 3344444432248999999999864221 10 2235699999999997
No 42
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=99.01 E-value=7.6e-08 Score=83.45 Aligned_cols=61 Identities=18% Similarity=0.167 Sum_probs=40.0
Q ss_pred EEEEEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 100 TFGLIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 100 ~f~~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
+++++||+|.+... ...+.++.+. .++|.|+|+||++.. ..+ +.++.+ ..|++.|.||||.
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~--------~~~----~~l~~~--~~~~~~V~GN~D~ 64 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK--------ETY----DYLKTI--APDVHIVRGDFDE 64 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH--------HHH----HHHHhh--CCceEEEECCCCc
Confidence 47899999955432 2234445444 379999999999831 222 233332 2379999999997
No 43
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.00 E-value=9.6e-09 Score=87.53 Aligned_cols=63 Identities=16% Similarity=-0.001 Sum_probs=42.4
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
+|++++||+|......+.+.+..+...++|.|+++||++. . ...+.++.+ ..|+++|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~--------~----~~~~~l~~~--~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLTS--------P----FVLKEFEDL--AAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCCC--------H----HHHHHHHHh--CCceEEEccCCCc
Confidence 5899999999765443444444443237999999999971 1 122333332 3589999999996
No 44
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=99.00 E-value=6.7e-09 Score=86.27 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=82.7
Q ss_pred HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccC
Q 040421 118 THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLP 197 (407)
Q Consensus 118 ~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P 197 (407)
+++......-|.|++.||+..+..... . ..=++++..+.. --+.+.||||+.+. ... ...+ .+|
T Consensus 35 k~W~~~v~~eDiVllpGDiSWaM~l~e---a--~~Dl~~i~~LPG--~K~m~rGNHDYWw~-s~s------kl~n--~lp 98 (230)
T COG1768 35 KHWRSKVSPEDIVLLPGDISWAMRLEE---A--EEDLRFIGDLPG--TKYMIRGNHDYWWS-SIS------KLNN--ALP 98 (230)
T ss_pred HHHHhcCChhhEEEecccchhheechh---h--hhhhhhhhcCCC--cEEEEecCCccccc-hHH------HHHh--hcC
Confidence 344443224489999999998765421 1 111455554422 34779999999542 111 0000 011
Q ss_pred CCCCCCCCCeEEEEecCcEEEEEEe---cc-ccCCCChHH--------HHHHHHhccccCCCCCCeEEEEeeccccccCC
Q 040421 198 YRAPYSTAPFWYSIRRASAHIIVMS---CY-SAFGKYTPQ--------YKWLEKEFPKVNRSETPWLIVLMHCPLYNSYV 265 (407)
Q Consensus 198 ~~~~~~~~~~~ysf~~g~v~fi~Ld---s~-~~~~~~~~Q--------~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~ 265 (407)
..- .. ..-.|.+++..++..- +- .++....+| +.-|+..+.++-++.....|||.|.|+++...
T Consensus 99 ~~l--~~--~n~~f~l~n~aI~G~RgW~s~~~~~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~~ 174 (230)
T COG1768 99 PIL--FY--LNNGFELLNYAIVGVRGWDSPSFDSEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDDG 174 (230)
T ss_pred chH--hh--hccceeEeeEEEEEeecccCCCCCcCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCCC
Confidence 100 00 0011334444443322 11 112222222 33344322222224455789999999998654
Q ss_pred CCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 266 HHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 266 ~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
.. + .+..++++++|+.++.||.|--.|-.
T Consensus 175 t~---~-----~~sevlee~rv~~~lyGHlHgv~~p~ 203 (230)
T COG1768 175 TP---G-----PFSEVLEEGRVSKCLYGHLHGVPRPN 203 (230)
T ss_pred CC---c-----chHHHHhhcceeeEEeeeccCCCCCC
Confidence 32 1 46678889999999999999877654
No 45
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.97 E-value=2.7e-09 Score=87.55 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=32.9
Q ss_pred EEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 252 LIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 252 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
.|+++|+|++....... ....-.+.+..++.+++++++|+||.|......
T Consensus 58 ~Ilv~H~pp~~~~~~~~-~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~ 107 (129)
T cd07403 58 DILLTHAPPAGIGDGED-FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ 107 (129)
T ss_pred CEEEECCCCCcCcCccc-ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc
Confidence 57888888764332110 011124567788888999999999999755443
No 46
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.97 E-value=2e-09 Score=91.30 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=34.9
Q ss_pred hhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh---ccCCeEEccCCCccc
Q 040421 120 YELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA---AYQPWIWTVGNHEID 176 (407)
Q Consensus 120 ~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~GNHD~~ 176 (407)
+++. .+||+|+++||++..... .....|..+...+..+. ...|+++++||||..
T Consensus 33 ~i~~-~~pd~vv~~GDl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~ 89 (156)
T cd08165 33 SLWL-LQPDVVFVLGDLFDEGKW--STDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIG 89 (156)
T ss_pred HHHh-cCCCEEEECCCCCCCCcc--CCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcC
Confidence 3344 489999999999965321 12244545444333332 247999999999984
No 47
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.97 E-value=1.4e-09 Score=93.65 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=36.1
Q ss_pred HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-------ccCCeEEccCCCccc
Q 040421 118 THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-------AYQPWIWTVGNHEID 176 (407)
Q Consensus 118 ~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-------~~~P~~~~~GNHD~~ 176 (407)
..+.+. .+||+|+++||++..... .....|.+..+.+..+. ..+|++.++||||..
T Consensus 38 ~~~i~~-~~pd~vi~lGDl~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g 100 (171)
T cd07384 38 KTALQR-LKPDVVLFLGDLFDGGRI--ADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIG 100 (171)
T ss_pred HHHHHh-cCCCEEEEeccccCCcEe--CCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccC
Confidence 344444 499999999999964321 12234554443333332 268999999999985
No 48
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.96 E-value=2.5e-08 Score=86.84 Aligned_cols=179 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred CcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-ccCCeEEccCCCccc
Q 040421 98 PYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-AYQPWIWTVGNHEID 176 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~~GNHD~~ 176 (407)
.+|+++++|.|........+....++ .++|+++.+||++|..-. +...-.+-.. ++.+. ..+|+++++||-|-.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~-~~~D~lviaGDlt~~~~~---~~~~~~~~~~-~e~l~~~~~~v~avpGNcD~~ 77 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAAD-IRADLLVIAGDLTYFHFG---PKEVAEELNK-LEALKELGIPVLAVPGNCDPP 77 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhh-ccCCEEEEecceehhhcC---chHHHHhhhH-HHHHHhcCCeEEEEcCCCChH
Confidence 68999999999887655555555555 389999999999933211 1111111100 33333 468999999998863
Q ss_pred cCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccc--cC----CCChHH-HHHHHHhccccCCCCC
Q 040421 177 FAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYS--AF----GKYTPQ-YKWLEKEFPKVNRSET 249 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~--~~----~~~~~Q-~~WL~~~L~~~~~~~~ 249 (407)
.-. ....+ ..... .+ -+...+++.|+.+-... .+ ...+++ +.-|++-++.++. .
T Consensus 78 ~v~--------~~l~~-~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~-~- 138 (226)
T COG2129 78 EVI--------DVLKN-AGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADN-P- 138 (226)
T ss_pred HHH--------HHHHh-ccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccC-c-
Confidence 110 00000 00000 01 34667787787743211 11 112222 3445555555321 1
Q ss_pred CeEEEEeeccccccCCCCCCCC--hhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 250 PWLIVLMHCPLYNSYVHHYMEG--EPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 250 ~~~iv~~H~P~~~~~~~~~~~~--~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
-.|+++|.|||..... ...+ ..-...+..++++.+..+.+|||.|-+.-..
T Consensus 139 -~~Il~~HaPP~gt~~d-~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d 191 (226)
T COG2129 139 -VNILLTHAPPYGTLLD-TPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGID 191 (226)
T ss_pred -ceEEEecCCCCCcccc-CCCCccccchHHHHHHHHHhCCceEEEeeeccccccc
Confidence 1299999999976543 1122 1234577889999999999999999855443
No 49
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.93 E-value=6.9e-09 Score=90.02 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=87.1
Q ss_pred CcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhh--------------------------
Q 040421 98 PYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWD-------------------------- 151 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~-------------------------- 151 (407)
.-++++++|.+........+...+++ ..||+|+++||++-... ....|.
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e-~~~D~~v~~G~~~~~~a----~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~ 79 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPE-KGPDAVVFVGDLLKAEA----RSDEYERAQEEQREPDKSEINEEECYDSEALD 79 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHH-HT-SEEEEES-SS-TCH----HHHHHHHHHHTT----THHHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccc-cCCCEEEEeccccccch----hhhHHHHHhhhccCcchhhhhhhhhhhHHHHH
Confidence 34789999988765444445455555 38999999999984321 123444
Q ss_pred HHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEecccc-CC--
Q 040421 152 TWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSA-FG-- 228 (407)
Q Consensus 152 ~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~-~~-- 228 (407)
.|++.+.. ..+|.+++|||||....-... .+|....-.|.-- .. ...+.+.-|...++.+-..-. ..
T Consensus 80 ~ff~~L~~--~~~p~~~vPG~~Dap~~~~lr-----~a~~~e~v~p~~~--~v-H~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 80 KFFRILGE--LGVPVFVVPGNMDAPERFFLR-----EAYNAEIVTPHIH--NV-HESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHC--C-SEEEEE--TTS-SHHHHHH-----HHHHCCCC-TTEE--E--CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHh--cCCcEEEecCCCCchHHHHHH-----HHhccceecccee--ee-eeeecccCCcEEEEecCccccCCCcc
Confidence 44444443 368999999999973100000 0111111111100 00 012333345577777655311 00
Q ss_pred ------CChHHHHHHHHhccccCCCCCCeEEEEeeccc-cccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 229 ------KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPL-YNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 229 ------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
.......|..+.|..++ ..-+|+++|.|+ +..+..+. -.+.+..++++++.++||+||.|--.
T Consensus 150 ~~~~LrYP~weaey~lk~l~elk---~~r~IlLfhtpPd~~kg~~h~-----GS~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLRELK---DYRKILLFHTPPDLHKGLIHV-----GSAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGCT---SSEEEEEESS-BTBCTCTBTT-----SBHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccccchHHHHHHHHHHHHhcc---cccEEEEEecCCccCCCcccc-----cHHHHHHHHHhcCCcEEEecccccch
Confidence 01234556667777642 235677799999 44332221 22467789999999999999999654
No 50
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.90 E-value=2.4e-08 Score=90.56 Aligned_cols=75 Identities=17% Similarity=0.057 Sum_probs=46.0
Q ss_pred EEEecCCCCCCch----hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc-cCCeEEccCCCccc
Q 040421 102 GLIGDLGQTYYSN----RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA-YQPWIWTVGNHEID 176 (407)
Q Consensus 102 ~~~gD~~~~~~~~----~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~~GNHD~~ 176 (407)
++++|+|.+.... ..++.+.+...+||+|+++||++..--.........+.+.+.++.+.. ..|+++++||||+.
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GNHD~~ 81 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGNRDFL 81 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCCCchh
Confidence 5799999875322 233444433237999999999995210000011222344556666654 48999999999984
No 51
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.88 E-value=1.6e-07 Score=91.30 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=30.5
Q ss_pred CCcEEEEEecCCCCCCc---------hhhHHHhh---hCCCCCceEEEcCCccccCC
Q 040421 97 VPYTFGLIGDLGQTYYS---------NRTLTHYE---LNPIKGQTVLFVGDLSYADD 141 (407)
Q Consensus 97 ~~~~f~~~gD~~~~~~~---------~~~l~~~~---~~~~~~d~vl~~GD~~y~~~ 141 (407)
..+||++++|+|.+... ..++.+++ .. .++|+||++||++....
T Consensus 2 ~~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~-~~vD~VLiaGDLFd~~~ 57 (405)
T TIGR00583 2 DTIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKE-QDVDMILLGGDLFHENK 57 (405)
T ss_pred CceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHH-cCCCEEEECCccCCCCC
Confidence 46899999999987421 22333322 22 38999999999997643
No 52
>PRK09453 phosphodiesterase; Provisional
Probab=98.78 E-value=3.7e-07 Score=79.63 Aligned_cols=74 Identities=9% Similarity=0.030 Sum_probs=44.1
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCC--chhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHD--NNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
+|++++||+|......+.+.+..+. .++|.|+++||++..... ... ....++..+.++.+ ..|++++.||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~-~~~d~ii~lGDi~~~~~~-~~~~~~~~~~~~~~~l~~~--~~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQ-SGADWLVHLGDVLYHGPR-NPLPEGYAPKKVAELLNAY--ADKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHh-cCCCEEEEcccccccCcC-CCCccccCHHHHHHHHHhc--CCceEEEccCCcch
Confidence 5899999999654322333333333 389999999999853211 000 00122333334332 35899999999973
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.74 E-value=7.7e-08 Score=88.55 Aligned_cols=175 Identities=14% Similarity=0.085 Sum_probs=86.3
Q ss_pred cEEEEEecCCCCC------Cchhh----HHHhhhCCCCCc-eEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeE
Q 040421 99 YTFGLIGDLGQTY------YSNRT----LTHYELNPIKGQ-TVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWI 167 (407)
Q Consensus 99 ~~f~~~gD~~~~~------~~~~~----l~~~~~~~~~~d-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ 167 (407)
++|+.++|+|... ..... ++++.++ ++| +++.+||++...... +........+.++. .-.-+
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~--~~~~l~v~~GD~~~~~~~~--~~~~~~~~~~~l~~---~g~d~ 73 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAE--NENTLLLDAGDNFDGSPPS--TATKGEANIELMNA---LGYDA 73 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhc--CCCeEEEeCCccCCCccch--hccCCcHHHHHHHh---cCCCE
Confidence 5899999999553 22222 3344443 566 789999999654321 11112223333333 23556
Q ss_pred EccCCCccccCCCCCCcccccccccccccC-------CCC---CCCCCCeEEEEecCcE--EEEEEeccccCC-------
Q 040421 168 WTVGNHEIDFAPQLGEAIPFKPFANRFHLP-------YRA---PYSTAPFWYSIRRASA--HIIVMSCYSAFG------- 228 (407)
Q Consensus 168 ~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P-------~~~---~~~~~~~~ysf~~g~v--~fi~Lds~~~~~------- 228 (407)
+++||||+..... .+.........| ..+ .......|-.++.+++ -|+.+.+.....
T Consensus 74 ~~~GNHe~d~g~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~~ 148 (252)
T cd00845 74 VTIGNHEFDYGLD-----ALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGWI 148 (252)
T ss_pred EeeccccccccHH-----HHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCcc
Confidence 7889999853211 011111111111 000 0001123455677775 455554421100
Q ss_pred ---CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccc
Q 040421 229 ---KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300 (407)
Q Consensus 229 ---~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r 300 (407)
......+.+++..+. .+.+...+|++.|.|... ...+...+ .+||++|+||.|..+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~D~vIvl~H~g~~~------------~~~la~~~--~giDlvlggH~H~~~~ 208 (252)
T cd00845 149 IGLPFEDLAEAVAVAEEL-LAEGADVIILLSHLGLDD------------DEELAEEV--PGIDVILGGHTHHLLE 208 (252)
T ss_pred cCceecCHHHHHHHHHHH-HhCCCCEEEEEeccCccc------------hHHHHhcC--CCccEEEcCCcCcccC
Confidence 001122333321121 124667899999987532 01222112 5899999999998654
No 54
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.73 E-value=5.8e-08 Score=95.55 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=99.7
Q ss_pred hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhh---hHHHHHHhhhhccCCeEEccCCCccccCCCCCCc--cc---
Q 040421 115 RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRW---DTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEA--IP--- 186 (407)
Q Consensus 115 ~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~---~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~--~~--- 186 (407)
.+|.++.++..++|+|+++||++--+.+....+... ....+.+......+|+|+++||||.-....+... ..
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N~F~~~~~~~~~~ 278 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVNLFAPGSVPKRHS 278 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHhhcCCCCCcchhh
Confidence 345566666445999999999995543221111111 1123334455568999999999998532111100 00
Q ss_pred ----ccccccccc--cCCCC-CCCCCCeEEEEe-cCcEEEEEEeccccC----------CCChHHHHHHHHhccccCCCC
Q 040421 187 ----FKPFANRFH--LPYRA-PYSTAPFWYSIR-RASAHIIVMSCYSAF----------GKYTPQYKWLEKEFPKVNRSE 248 (407)
Q Consensus 187 ----~~~~~~~f~--~P~~~-~~~~~~~~ysf~-~g~v~fi~Lds~~~~----------~~~~~Q~~WL~~~L~~~~~~~ 248 (407)
|..+...|. +|... .....+.+|.-. +++.++|+||+..-+ ..-..|++|+..+|.+++ ++
T Consensus 279 ~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae-~~ 357 (577)
T KOG3770|consen 279 QLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAE-SA 357 (577)
T ss_pred hhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHH-hc
Confidence 011111111 23221 112234566543 588999999995321 224678999999999875 34
Q ss_pred CCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCC--CcEEEeccccccc
Q 040421 249 TPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYK--VDVVFAAHVHAYE 299 (407)
Q Consensus 249 ~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~--vdlvl~GH~H~y~ 299 (407)
..-+=+++|.|+-... +..+ -...+-.++.++. +...|.||.|.=+
T Consensus 358 GekVhil~HIPpG~~~---c~~~--ws~~f~~iv~r~~~tI~gqf~GH~h~d~ 405 (577)
T KOG3770|consen 358 GEKVHILGHIPPGDGV---CLEG--WSINFYRIVNRFRSTIAGQFYGHTHIDE 405 (577)
T ss_pred CCEEEEEEeeCCCCcc---hhhh--hhHHHHHHHHHHHHhhhhhccccCccee
Confidence 4457788999974311 1111 1223444555552 4467999999644
No 55
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.68 E-value=6e-08 Score=84.05 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=34.7
Q ss_pred HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHH-HHHHhhhh-------------------ccCCeEEccCCCcccc
Q 040421 118 THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTW-GRFIERNA-------------------AYQPWIWTVGNHEIDF 177 (407)
Q Consensus 118 ~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~-~~~~~~~~-------------------~~~P~~~~~GNHD~~~ 177 (407)
+.+... .+||.|+++||++.. ++. .+.+|... .++.+-+. ..+|++.++||||..+
T Consensus 37 ~~~~~~-l~Pd~V~fLGDLfd~-~w~--~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHDIG~ 112 (193)
T cd08164 37 SMMQFW-LKPDAVVVLGDLFSS-QWI--DDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHDVGY 112 (193)
T ss_pred HHHHHh-cCCCEEEEeccccCC-Ccc--cHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCcccCCC
Confidence 334444 499999999999954 432 23445332 22222111 1389999999999964
No 56
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.64 E-value=7.4e-08 Score=86.48 Aligned_cols=182 Identities=12% Similarity=-0.005 Sum_probs=87.4
Q ss_pred EEEecCCCCCCchh---hHHHhhhCC--CCCceEEEcCCccccCCCCCCC-chhhhH-HHHHHhhhhccCCeEEccCCCc
Q 040421 102 GLIGDLGQTYYSNR---TLTHYELNP--IKGQTVLFVGDLSYADDYPFHD-NNRWDT-WGRFIERNAAYQPWIWTVGNHE 174 (407)
Q Consensus 102 ~~~gD~~~~~~~~~---~l~~~~~~~--~~~d~vl~~GD~~y~~~~~~~~-~~~~~~-~~~~~~~~~~~~P~~~~~GNHD 174 (407)
++++|.|.+..... .+....+.. .++|.++++||++..-...... ...... +...++......+++.++||||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~v~GNHD 80 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLADRGTRVYYVPGNHD 80 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHHHCCCeEEEECCCch
Confidence 36899998764322 122222221 3899999999999532110000 111111 2334444456789999999999
Q ss_pred cccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEE
Q 040421 175 IDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIV 254 (407)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv 254 (407)
..... .+........ .......+.+++.+++++-... +........|+...+.... ..+.++
T Consensus 81 ~~~~~---------~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~~~~~~---~~~~~~ 142 (217)
T cd07398 81 FLLGD---------FFAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRLGRNPY---DQLLFL 142 (217)
T ss_pred HHHHh---------HHHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHHhCcHH---HHHHHh
Confidence 85210 0111100000 0011114667788888876532 2333444445544332200 000000
Q ss_pred Eeeccc---------cc----cCCCC--CCCChhHHHHHHHHHHhCCCcEEEeccccccccc
Q 040421 255 LMHCPL---------YN----SYVHH--YMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERS 301 (407)
Q Consensus 255 ~~H~P~---------~~----~~~~~--~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 301 (407)
..+.+. .. ..... ........+.+..++++++++++++||+|.....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 204 (217)
T cd07398 143 NRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALH 204 (217)
T ss_pred cchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeE
Confidence 000000 00 00000 0011223455667778899999999999986544
No 57
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.61 E-value=5.1e-07 Score=83.27 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=85.1
Q ss_pred cEEEEEecCCCCC-------CchhhH----HHhhhCCCCCc-eEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCe
Q 040421 99 YTFGLIGDLGQTY-------YSNRTL----THYELNPIKGQ-TVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPW 166 (407)
Q Consensus 99 ~~f~~~gD~~~~~-------~~~~~l----~~~~~~~~~~d-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 166 (407)
++|+.+.|+|.-. .....+ +++.++ +++ ++|.+||++...... .....+...+.++.+ -.-
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~--~~~~l~l~~GD~~~g~~~~--~~~~g~~~~~~l~~l---~~d 73 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKE--NPNTLVLFSGDVLSPSLLS--TATKGKQMVPVLNAL---GVD 73 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEECCCccCCccch--hhcCCccHHHHHHhc---CCc
Confidence 4778888887311 112233 333333 566 999999999543211 111122333444433 133
Q ss_pred EEccCCCccccCCCCCCcccccccccccccC---------CC-CCCCCCCeEEEEecCcE--EEEEEeccccC------C
Q 040421 167 IWTVGNHEIDFAPQLGEAIPFKPFANRFHLP---------YR-APYSTAPFWYSIRRASA--HIIVMSCYSAF------G 228 (407)
Q Consensus 167 ~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P---------~~-~~~~~~~~~ysf~~g~v--~fi~Lds~~~~------~ 228 (407)
+.++||||+..... .+.........| .. ..-..-+.|.-++.+++ -|+.+.+.... .
T Consensus 74 ~~~~GNHefd~g~~-----~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~~~~~~~~~~~ 148 (257)
T cd07406 74 LACFGNHEFDFGED-----QLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEEEWLETLTIDP 148 (257)
T ss_pred EEeecccccccCHH-----HHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecccccccccCCC
Confidence 66899999953211 001000000000 00 00001245677788885 45555543211 0
Q ss_pred ---CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-CCCcEEEeccccccc
Q 040421 229 ---KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 229 ---~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
....-.+.+++.++...+.++..+|++.|.+... .. .+.++ .+||++|+||.|..+
T Consensus 149 ~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~IlgGH~H~~~ 208 (257)
T cd07406 149 EYVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLILGGHDHEYI 208 (257)
T ss_pred CcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceEEecccceeE
Confidence 0112223333333222225678999999987421 11 22333 479999999999866
No 58
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.57 E-value=1.2e-06 Score=81.73 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=35.0
Q ss_pred HHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-CCCcEEEeccccccc
Q 040421 234 YKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 234 ~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
.++..++|++ .++..+|+++|.+....... ....+. ....|.++ .+||++|+||.|...
T Consensus 172 ~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~-~~~~~~---~~~~la~~~~~vD~IlgGHsH~~~ 231 (277)
T cd07410 172 AKKYVPKLRA---EGADVVVVLAHGGFERDLEE-SLTGEN---AAYELAEEVPGIDAILTGHQHRRF 231 (277)
T ss_pred HHHHHHHHHH---cCCCEEEEEecCCcCCCccc-ccCCcc---HHHHHHhcCCCCcEEEeCCCcccc
Confidence 4455555554 46779999999986543210 011111 12234444 589999999999754
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.52 E-value=1.7e-06 Score=79.37 Aligned_cols=183 Identities=17% Similarity=0.146 Sum_probs=96.7
Q ss_pred EEEEecCCCCCCch-hhHHHhhhC-CCCCceEEEcCCccccCCCCCCCc---------hhhhHHHHHHhhhh-ccCCeEE
Q 040421 101 FGLIGDLGQTYYSN-RTLTHYELN-PIKGQTVLFVGDLSYADDYPFHDN---------NRWDTWGRFIERNA-AYQPWIW 168 (407)
Q Consensus 101 f~~~gD~~~~~~~~-~~l~~~~~~-~~~~d~vl~~GD~~y~~~~~~~~~---------~~~~~~~~~~~~~~-~~~P~~~ 168 (407)
|++.||.|...... ..+..+.+. ..++|++|++||+..... ..+. ..+..|.+.++... ..+|+++
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~--~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~f 78 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRN--EADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIF 78 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCC--cchhhhhccchhhhhhhhHHHHhcCCccCCeeEEE
Confidence 57899999853221 223333322 137999999999953221 1110 12334444444332 4678899
Q ss_pred ccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeE-----EEEecCcEEEEEEeccc---cCC--------CChH
Q 040421 169 TVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFW-----YSIRRASAHIIVMSCYS---AFG--------KYTP 232 (407)
Q Consensus 169 ~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~-----ysf~~g~v~fi~Lds~~---~~~--------~~~~ 232 (407)
+.||||... .+. .++..+ -...+.+ ..+++++++|..|.... ++. ..+.
T Consensus 79 i~GNHE~~~-----------~l~---~l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~ 143 (262)
T cd00844 79 IGGNHEASN-----------YLW---ELPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSED 143 (262)
T ss_pred ECCCCCCHH-----------HHH---hhcCCC-eecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHH
Confidence 999999621 010 011100 0001122 23556889999987622 111 1122
Q ss_pred HHHHH-------HHhccccCCCCCCeEEEEeeccccccCCCCCCC---------------ChhHHHHHHHHHHhCCCcEE
Q 040421 233 QYKWL-------EKEFPKVNRSETPWLIVLMHCPLYNSYVHHYME---------------GEPMRVLYEPWFVEYKVDVV 290 (407)
Q Consensus 233 Q~~WL-------~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~---------------~~~~~~~l~~l~~~~~vdlv 290 (407)
++..+ .+.|... ...--|+++|.|+.......... +..-...+..++++.+...+
T Consensus 144 ~~rs~y~~r~~~~~kl~~~---~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryh 220 (262)
T cd00844 144 TKRSAYHVRNIEVFKLKQL---KQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYW 220 (262)
T ss_pred HHHHhhhhhHHHHHHHHhc---CCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEE
Confidence 33221 0112211 11235899999987654321100 01122457789999999999
Q ss_pred Eeccccc-cccccc
Q 040421 291 FAAHVHA-YERSER 303 (407)
Q Consensus 291 l~GH~H~-y~r~~~ 303 (407)
|+||.|. |++..|
T Consensus 221 f~gH~H~~f~~~~~ 234 (262)
T cd00844 221 FSAHLHVKFAALVP 234 (262)
T ss_pred EEecCCcccceecC
Confidence 9999998 776654
No 60
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.47 E-value=5e-07 Score=88.63 Aligned_cols=73 Identities=19% Similarity=0.119 Sum_probs=49.9
Q ss_pred cEEEEEecCCCCCC---c-------hh----hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh-cc
Q 040421 99 YTFGLIGDLGQTYY---S-------NR----TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA-AY 163 (407)
Q Consensus 99 ~~f~~~gD~~~~~~---~-------~~----~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~-~~ 163 (407)
+||+.++|+|.+.. . .. .+..+.++ ++||||++||+...... ....-..+.++++.+. ..
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~--~vD~vliAGDlFd~~~P---s~~a~~~~~~~l~~l~~~~ 75 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEE--KVDFVLIAGDLFDTNNP---SPRALKLFLEALRRLKDAG 75 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHc--cCCEEEEccccccCCCC---CHHHHHHHHHHHHHhccCC
Confidence 58999999999821 1 11 22333343 88999999999976432 2233344566666554 47
Q ss_pred CCeEEccCCCccc
Q 040421 164 QPWIWTVGNHEID 176 (407)
Q Consensus 164 ~P~~~~~GNHD~~ 176 (407)
+|++++.||||..
T Consensus 76 Ipv~~I~GNHD~~ 88 (390)
T COG0420 76 IPVVVIAGNHDSP 88 (390)
T ss_pred CcEEEecCCCCch
Confidence 9999999999985
No 61
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.41 E-value=1.7e-05 Score=67.85 Aligned_cols=64 Identities=16% Similarity=-0.007 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
++++++||+|..........++... .++|+|||+||.+.... ...+... -..++++|.||.|..
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~-~~~d~vih~GD~~~~~~--------~~~l~~~-----~~~~i~~V~GN~D~~ 65 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNL-EKVDAVIHAGDSTSPFT--------LDALEGG-----LAAKLIAVRGNCDGE 65 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhh-cCCCEEEECCCcCCccc--------hHHhhcc-----cccceEEEEccCCCc
Confidence 6899999999876422222223332 48999999999995422 1111111 135899999999984
No 62
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.31 E-value=5e-06 Score=76.71 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=86.2
Q ss_pred cEEEEEecCCCCCC-------chhhHHHhhhCC--CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEc
Q 040421 99 YTFGLIGDLGQTYY-------SNRTLTHYELNP--IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWT 169 (407)
Q Consensus 99 ~~f~~~gD~~~~~~-------~~~~l~~~~~~~--~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 169 (407)
++|+.++|+|.... ....+..++++. .+++++|.+||++...... .........+.+..+ ... +.+
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~--~~~~g~~~~~~ln~~--g~d-~~~ 75 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPIS--DLDKGETIIKIMNAV--GYD-AVT 75 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhh--hhcCCcHHHHHHHhc--CCc-EEc
Confidence 57899999996421 122333322211 1568999999998543211 111112233333332 223 457
Q ss_pred cCCCccccCCCCCCcccccccccccccCCC---------CCCCCCCeEEEEecC-c--EEEEEEecccc--CC--C----
Q 040421 170 VGNHEIDFAPQLGEAIPFKPFANRFHLPYR---------APYSTAPFWYSIRRA-S--AHIIVMSCYSA--FG--K---- 229 (407)
Q Consensus 170 ~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~---------~~~~~~~~~ysf~~g-~--v~fi~Lds~~~--~~--~---- 229 (407)
+||||+.+... .+....+.+.+|.- +.... ..|.-++.+ + +-||.+-+... .. .
T Consensus 76 ~GNHefd~G~~-----~l~~~~~~~~~~~l~aNv~~~~~~~~~~-~py~i~~~~~G~kIgviG~~~~~~~~~~~~~~~~~ 149 (257)
T cd07408 76 PGNHEFDYGLD-----RLKELSKEADFPFLSANVYDNDTGKRVF-KPYKIKELGNGVKVGVIGLTTPETATKTHPKNVKD 149 (257)
T ss_pred cccccccCCHH-----HHHHHHhhCCCCEEEEEEEEcCCCCccc-CCEEEEEcCCCCEEEEEeecCcCcccccCccccCC
Confidence 89999964211 01111111111111 10011 224445666 5 55666654311 00 0
Q ss_pred --ChHHHHHHH----HhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccc
Q 040421 230 --YTPQYKWLE----KEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERS 301 (407)
Q Consensus 230 --~~~Q~~WL~----~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~ 301 (407)
...-.+-++ ..|++ .++..+|++.|.+....... . ....+.. .-.+||++|.||.|.....
T Consensus 150 ~~~~d~~~~~~~~~v~~l~~---~~~D~iIvl~H~G~~~~~~~----~--~~~~la~--~~~giDvIigGH~H~~~~~ 216 (257)
T cd07408 150 VTFEDPIEEAKKVIVAALKA---KGADVIVALGHLGVDRTSSP----W--TSTELAA--NVTGIDLIIDGHSHTTIEI 216 (257)
T ss_pred cEEecHHHHHHHHHHHHHHh---CCCCEEEEEeCcCcCCCCCC----c--cHHHHHH--hCCCceEEEeCCCcccccC
Confidence 011122232 33332 46779999999886543110 0 1112222 1248999999999986543
No 63
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.31 E-value=2.8e-05 Score=71.01 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=86.3
Q ss_pred EEEEEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
||+++||.=..... ...|.++.++ .++||++..||++.... .-. ....+.+..+ .+- ..++|||++.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~-~~~D~vi~NgEn~~gg~--gl~----~~~~~~L~~~--G~D-~iTlGNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKE-YKIDFVIANGENAAGGK--GIT----PKIAKELLSA--GVD-VITMGNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHH-CCCCEEEECCccccCCC--CCC----HHHHHHHHhc--CCC-EEEecccccC
Confidence 58899998544322 2334455544 37899999999986421 111 2223333322 223 4577999996
Q ss_pred cCCCCCCccccccccccc---ccCCCCC-CCCCCeEEEEecCcEEEEEEecccc--CCCChHHHHHHHHhccccCCCCCC
Q 040421 177 FAPQLGEAIPFKPFANRF---HLPYRAP-YSTAPFWYSIRRASAHIIVMSCYSA--FGKYTPQYKWLEKEFPKVNRSETP 250 (407)
Q Consensus 177 ~~~~~~~~~~~~~~~~~f---~~P~~~~-~~~~~~~ysf~~g~v~fi~Lds~~~--~~~~~~Q~~WL~~~L~~~~~~~~~ 250 (407)
.. +. ..+.+.. -.|.|-+ ......|.-++.+++++-+++-... ......-++-+++.+++.. .+.+
T Consensus 71 ~g----el---~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~~~~~~v~~lk-~~~D 142 (255)
T cd07382 71 KK----EI---LDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFRAADELLEELK-EEAD 142 (255)
T ss_pred cc----hH---HHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHHHHHHHHHHHh-cCCC
Confidence 32 11 1111111 1122211 1122346677777766555443211 1111222333555554432 2567
Q ss_pred eEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 251 WLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
.+||.+|.-.- ..+..+.. .-.-+||+++.||+|...
T Consensus 143 ~IIV~~H~g~t-----------sEk~ala~-~ldg~VdvIvGtHTHv~t 179 (255)
T cd07382 143 IIFVDFHAEAT-----------SEKIALGW-YLDGRVSAVVGTHTHVQT 179 (255)
T ss_pred EEEEEECCCCC-----------HHHHHHHH-hCCCCceEEEeCCCCccC
Confidence 89999997421 11122322 123369999999999753
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.30 E-value=9.6e-06 Score=76.05 Aligned_cols=52 Identities=21% Similarity=0.077 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh--CCCcEEEecccccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE--YKVDVVFAAHVHAYER 300 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~--~~vdlvl~GH~H~y~r 300 (407)
.++..+|++.|........... ..........++.+ .++|++|+||.|....
T Consensus 190 ~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~ 243 (288)
T cd07412 190 GGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYN 243 (288)
T ss_pred CCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCcccc
Confidence 4677899999987643221110 00011122333444 4799999999998653
No 65
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.26 E-value=3.6e-06 Score=78.00 Aligned_cols=147 Identities=15% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCceE-EEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCC-----
Q 040421 126 KGQTV-LFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYR----- 199 (407)
Q Consensus 126 ~~d~v-l~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~----- 199 (407)
.+|.+ +.+||++...... .........+.+.. +++.++.||||+.+... .+....+.+..|.-
T Consensus 50 ~~~~l~l~~GD~~~gs~~~--~~~~g~~~~~~l~~----~g~da~~GNHefd~g~~-----~l~~~~~~~~~~~l~aN~~ 118 (264)
T cd07411 50 NPNTLLLDGGDTWQGSGEA--LYTRGQAMVDALNA----LGVDAMVGHWEFTYGPE-----RVRELFGRLNWPFLAANVY 118 (264)
T ss_pred CCCeEEEeCCCccCCChHH--hhcCChhHHHHHHh----hCCeEEecccccccCHH-----HHHHHHhhCCCCEEEEEEE
Confidence 67876 5799999543210 01111222333332 56666569999864211 01111111111110
Q ss_pred ----CCCCCCCeEEEEecCcE--EEEEEeccccCC--C--------ChHHHHHHHHhcccc-CCCCCCeEEEEeeccccc
Q 040421 200 ----APYSTAPFWYSIRRASA--HIIVMSCYSAFG--K--------YTPQYKWLEKEFPKV-NRSETPWLIVLMHCPLYN 262 (407)
Q Consensus 200 ----~~~~~~~~~ysf~~g~v--~fi~Lds~~~~~--~--------~~~Q~~WL~~~L~~~-~~~~~~~~iv~~H~P~~~ 262 (407)
+.. .-..|.-++.+++ .+|.+.+..... . .....+.+++.+++. ...+...+|++.|.+...
T Consensus 119 ~~~~~~~-~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~ 197 (264)
T cd07411 119 DDEAGER-VFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQEVVVKLRREEGVDVVVLLSHNGLPV 197 (264)
T ss_pred eCCCCCc-ccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHHHHHHHHHHhCCCCEEEEEecCCchh
Confidence 000 1123555677774 566665431100 0 112334444432221 124677999999987421
Q ss_pred cCCCCCCCChhHHHHHHHHHHh-CCCcEEEeccccccc
Q 040421 263 SYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 263 ~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
.. .+.++ .+||++|+||.|...
T Consensus 198 --------~~-------~la~~~~~iDlilgGH~H~~~ 220 (264)
T cd07411 198 --------DV-------ELAERVPGIDVILSGHTHERT 220 (264)
T ss_pred --------hH-------HHHhcCCCCcEEEeCcccccc
Confidence 01 12223 479999999999643
No 66
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.25 E-value=0.0001 Score=68.61 Aligned_cols=185 Identities=13% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCcEEEEEecCCCCCC----------c----hhhHHHhhhC--CCCCc-eEEEcCCccccCCCCCCCchhhhHHHHHHhh
Q 040421 97 VPYTFGLIGDLGQTYY----------S----NRTLTHYELN--PIKGQ-TVLFVGDLSYADDYPFHDNNRWDTWGRFIER 159 (407)
Q Consensus 97 ~~~~f~~~gD~~~~~~----------~----~~~l~~~~~~--~~~~d-~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~ 159 (407)
..++|+..+|+|.... . ...++++.+. ..+++ ++|.+||.+............+....+++..
T Consensus 4 ~~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~ 83 (282)
T cd07407 4 GDINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRM 83 (282)
T ss_pred ceEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHh
Confidence 5789999999996421 0 1112222211 12444 6788999997644321111133333444443
Q ss_pred hhccCCe-EEccCCCccccCCCCCCcccccccccccccCCC--------CCC---CCCCeEEEEecC-cE--EEEEEecc
Q 040421 160 NAAYQPW-IWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYR--------APY---STAPFWYSIRRA-SA--HIIVMSCY 224 (407)
Q Consensus 160 ~~~~~P~-~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~--------~~~---~~~~~~ysf~~g-~v--~fi~Lds~ 224 (407)
+++ .+++||||+...... ...+..+.+....|.- +.. .....|.-+..+ ++ -+|.|-+.
T Consensus 84 ----mgyDa~tlGNHEFd~g~~~--l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt~ 157 (282)
T cd07407 84 ----MPYDLLTIGNHELYNYEVA--DDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLFD 157 (282)
T ss_pred ----cCCcEEeecccccCccccH--HHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEecc
Confidence 333 568999999532110 0000001010111100 000 011235556665 64 45666443
Q ss_pred ccC-------CCC--hHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhC-CCc-EEEec
Q 040421 225 SAF-------GKY--TPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEY-KVD-VVFAA 293 (407)
Q Consensus 225 ~~~-------~~~--~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vd-lvl~G 293 (407)
..- ... ..+.+|+.+.|++ .++..+|+++|...-... ...+....+.++. ++| ++|+|
T Consensus 158 ~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~--------~~~~~~~~la~~~~~id~~Ii~G 226 (282)
T cd07407 158 FKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA--------EFKVLHDAIRKIFPDTPIQFLGG 226 (282)
T ss_pred cccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc--------cHHHHHHHHHHhCCCCCEEEEeC
Confidence 210 011 1223488777864 457789999998854321 1111112234444 577 79999
Q ss_pred ccccc
Q 040421 294 HVHAY 298 (407)
Q Consensus 294 H~H~y 298 (407)
|.|..
T Consensus 227 HsH~~ 231 (282)
T cd07407 227 HSHVR 231 (282)
T ss_pred Ccccc
Confidence 99975
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.23 E-value=1.1e-05 Score=75.47 Aligned_cols=78 Identities=17% Similarity=0.119 Sum_probs=43.9
Q ss_pred eEEEEecCcE--EEEEEecccc--CC---C---ChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHH
Q 040421 207 FWYSIRRASA--HIIVMSCYSA--FG---K---YTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRV 276 (407)
Q Consensus 207 ~~ysf~~g~v--~fi~Lds~~~--~~---~---~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~ 276 (407)
.|.-++.+++ -||.+-+... .. . .....+.+++.+++....++..+|++.|...-. ..
T Consensus 131 p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~------------d~ 198 (281)
T cd07409 131 PSTILTVGGEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV------------DK 198 (281)
T ss_pred CeEEEEECCEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh------------HH
Confidence 3555677775 4555544221 00 0 122334455555443324577899999986321 11
Q ss_pred HHHHHHHh-CCCcEEEeccccccc
Q 040421 277 LYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 277 ~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
.+.++ .+||++|+||.|...
T Consensus 199 ---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 199 ---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred ---HHHHcCCCCcEEEeCCcCccc
Confidence 22333 479999999999864
No 68
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.21 E-value=3.4e-06 Score=77.50 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=47.9
Q ss_pred cEEEEEecCCCCCCc---------hhhHHHh---hhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc-c-C
Q 040421 99 YTFGLIGDLGQTYYS---------NRTLTHY---ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA-Y-Q 164 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~---------~~~l~~~---~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 164 (407)
+||++++|+|.+... ...++++ +.+ .++|+||++||++..... .......+.++++.+.. . +
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~-~~~D~lli~GDi~d~~~p---~~~~~~~~~~~l~~l~~~~~i 76 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKA-EQIDALLVAGDVFDTANP---PAEAQELFNAFFRNLSDANPI 76 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHH-cCCCEEEECCccCCCCCC---CHHHHHHHHHHHHHHHhcCCc
Confidence 689999999987431 1123332 223 389999999999965321 11222334555555543 3 8
Q ss_pred CeEEccCCCccc
Q 040421 165 PWIWTVGNHEID 176 (407)
Q Consensus 165 P~~~~~GNHD~~ 176 (407)
|+++++||||..
T Consensus 77 ~v~~i~GNHD~~ 88 (253)
T TIGR00619 77 PIVVISGNHDSA 88 (253)
T ss_pred eEEEEccCCCCh
Confidence 999999999984
No 69
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.20 E-value=1.7e-05 Score=79.86 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=51.6
Q ss_pred CCCcEEEEEecCCCCCCc--h---hhHHHhhh-C-------CCCCceEEEcCCccccCCC-CCCC--------chhhhHH
Q 040421 96 DVPYTFGLIGDLGQTYYS--N---RTLTHYEL-N-------PIKGQTVLFVGDLSYADDY-PFHD--------NNRWDTW 153 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~--~---~~l~~~~~-~-------~~~~d~vl~~GD~~y~~~~-~~~~--------~~~~~~~ 153 (407)
...+++++++|.|.+... . ..+..+.. . ..+++.+|++||++...+. +... ....+.+
T Consensus 241 ~~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l 320 (504)
T PRK04036 241 DEKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAA 320 (504)
T ss_pred CCccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHH
Confidence 467899999999987542 1 12222222 0 1378999999999964221 1100 0112345
Q ss_pred HHHHhhhhccCCeEEccCCCccc
Q 040421 154 GRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 154 ~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
.++++.+...+|+++++||||..
T Consensus 321 ~~~L~~L~~~i~V~~ipGNHD~~ 343 (504)
T PRK04036 321 AEYLKQIPEDIKIIISPGNHDAV 343 (504)
T ss_pred HHHHHhhhcCCeEEEecCCCcch
Confidence 56667777788999999999974
No 70
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.19 E-value=1.2e-05 Score=76.92 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCcEEEEEecCCCCCCc-----h---------hhHH---HhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHh
Q 040421 96 DVPYTFGLIGDLGQTYYS-----N---------RTLT---HYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIE 158 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~-----~---------~~l~---~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~ 158 (407)
+..+|++.++|.|.-.+. . .-+. .+.+...+||.++++||++.+..+ ..+++|.+..+-++
T Consensus 46 ~n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~--~~~eEf~~~~~Rfk 123 (410)
T KOG3662|consen 46 ENSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQW--AGDEEFKKRYERFK 123 (410)
T ss_pred CCceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCcc--CChHHHHHHHHHHH
Confidence 578999999999975421 0 0111 122223599999999999975433 23456655433344
Q ss_pred hhh---ccCCeEEccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccc
Q 040421 159 RNA---AYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYS 225 (407)
Q Consensus 159 ~~~---~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~ 225 (407)
.+. ..+|.+.++||||.++... .......+|.- ..++...+|+.+++.|+++|++.
T Consensus 124 kIf~~k~~~~~~~i~GNhDIGf~~~-----~~~~~i~Rfe~------~fg~~~r~f~v~~~tf~~~d~~~ 182 (410)
T KOG3662|consen 124 KIFGRKGNIKVIYIAGNHDIGFGNE-----LIPEWIDRFES------VFGPTERRFDVGNLTFVMFDSNA 182 (410)
T ss_pred HhhCCCCCCeeEEeCCccccccccc-----cchhHHHHHHH------hhcchhhhhccCCceeEEeeehh
Confidence 332 3689999999999974321 11112223211 01234567899999999999864
No 71
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.17 E-value=3.1e-05 Score=70.81 Aligned_cols=75 Identities=13% Similarity=0.190 Sum_probs=46.1
Q ss_pred EEEecCCCCCCc--h---hhHHHhhhCC----CCCceEEEcCCccccCCC-CCCC--------chhhhHHHHHHhhhhcc
Q 040421 102 GLIGDLGQTYYS--N---RTLTHYELNP----IKGQTVLFVGDLSYADDY-PFHD--------NNRWDTWGRFIERNAAY 163 (407)
Q Consensus 102 ~~~gD~~~~~~~--~---~~l~~~~~~~----~~~d~vl~~GD~~y~~~~-~~~~--------~~~~~~~~~~~~~~~~~ 163 (407)
++++|.|.+... . ..+.++.+.. .++|.|+++||++..... .... .+.+..+.++++.+...
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 81 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPSH 81 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcccC
Confidence 578999976432 1 1222222221 257999999999964210 0000 11234456666777777
Q ss_pred CCeEEccCCCccc
Q 040421 164 QPWIWTVGNHEID 176 (407)
Q Consensus 164 ~P~~~~~GNHD~~ 176 (407)
+|+++++||||..
T Consensus 82 ~~v~~ipGNHD~~ 94 (243)
T cd07386 82 IKIIIIPGNHDAV 94 (243)
T ss_pred CeEEEeCCCCCcc
Confidence 9999999999984
No 72
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=98.14 E-value=2e-05 Score=73.76 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=30.3
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
.++..+|++.|......... .........+...+...++|++|.||.|...
T Consensus 172 ~~~D~VI~lsH~G~~~~~~~--~~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 172 EKPDIVIAATHMGHYDNGEH--GSNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred cCCCEEEEEecccccCCccc--cccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 35678999999987532211 0111111233333333589999999999854
No 73
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.14 E-value=0.00015 Score=66.56 Aligned_cols=197 Identities=17% Similarity=0.124 Sum_probs=101.7
Q ss_pred cEEEEEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 99 YTFGLIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
+||+++||.=..... ...|..+.++ .++||++..||++-. +. ... ....+.+.. ..+-++ +.|||++
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~-~~~D~vIaNgEn~~g-G~-Gi~----~~~~~~L~~--~GvDvi-T~GNH~~ 70 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSK-YQADLVIANGENTTH-GK-GLT----LKIYEFLKQ--SGVNYI-TMGNHTW 70 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHh-CCCCEEEEcCcccCC-CC-CCC----HHHHHHHHh--cCCCEE-Eccchhc
Confidence 589999998543211 2334455554 378999999999853 21 111 112222222 234444 5599999
Q ss_pred ccCCCCCCcccccccccccccCCCCCCCCCCeEEEEecCcEEEEEEeccc-cCC-C--ChHHHHHHHHhccccCCCCCCe
Q 040421 176 DFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASAHIIVMSCYS-AFG-K--YTPQYKWLEKEFPKVNRSETPW 251 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v~fi~Lds~~-~~~-~--~~~Q~~WL~~~L~~~~~~~~~~ 251 (407)
+...............+..+.|.. ..+..+..+..++.++-+++-.. .+. . ...-+.-+++.+++.. .+++.
T Consensus 71 Dkge~~~~i~~~~~~lrpanyp~~---~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~~~d~~i~~lk-~~~d~ 146 (266)
T TIGR00282 71 FQKLILDVVINQKDLVRPLNFDTS---FAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFKVLKELINMLK-KDCDL 146 (266)
T ss_pred cCcHHHHHHhccccccccCCCCCC---CCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHHHHHHHHHhhh-cCCCE
Confidence 632100000000001111122221 12234555677776666655421 111 1 1112223333333322 24678
Q ss_pred EEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEE-e
Q 040421 252 LIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYIT-I 330 (407)
Q Consensus 252 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv-~ 330 (407)
+||.+|.-. ... +.....+-+-+|++|+.-|+|...--..+ -++||-||+ .
T Consensus 147 IIVd~Haea-----------tsE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~i----------------l~~gtayitD~ 198 (266)
T TIGR00282 147 IFVDFHAET-----------TSE-KNAFGMAFDGYVTAVVGTHTHVPTADLRI----------------LPKGTAYITDV 198 (266)
T ss_pred EEEEeCCCC-----------HHH-HHHHHHHhCCCccEEEeCCCCCCCCccee----------------CCCCCEEEecC
Confidence 999999642 112 34456677889999999999975433222 147788987 5
Q ss_pred CCCCCCC
Q 040421 331 GDGGNQE 337 (407)
Q Consensus 331 G~gG~~~ 337 (407)
|.-|...
T Consensus 199 Gm~G~~~ 205 (266)
T TIGR00282 199 GMTGPFG 205 (266)
T ss_pred CcccCcc
Confidence 6666543
No 74
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=4.8e-06 Score=73.57 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred EEecCCCCCCch---hhHHHhhh-CCCCCceEEEcCCccccCCCCCCCchhhhHHHH----HHhhhh-ccCCeEEccCCC
Q 040421 103 LIGDLGQTYYSN---RTLTHYEL-NPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGR----FIERNA-AYQPWIWTVGNH 173 (407)
Q Consensus 103 ~~gD~~~~~~~~---~~l~~~~~-~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~----~~~~~~-~~~P~~~~~GNH 173 (407)
+++|.|.+.... ..+...++ ...+.|.+.++||++. ++... ..|.++.+ .+..++ ...|+|.++|||
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDifd--~w~g~--~~~~~~~~~V~~~l~~~a~~G~~v~~i~GN~ 77 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIFD--GWIGD--DEPPQLHRQVAQKLLRLARKGTRVYYIHGNH 77 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhhh--hhhcC--CcccHHHHHHHHHHHHHHhcCCeEEEecCch
Confidence 589999984332 22233333 3235699999999994 43322 24544432 233333 359999999999
Q ss_pred ccc
Q 040421 174 EID 176 (407)
Q Consensus 174 D~~ 176 (407)
|+.
T Consensus 78 Dfl 80 (237)
T COG2908 78 DFL 80 (237)
T ss_pred HHH
Confidence 974
No 75
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.12 E-value=3e-05 Score=86.18 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=91.0
Q ss_pred CCCcEEEEEecCCCCCCchhh----HHHhhhCCCCCceEEE-cCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEcc
Q 040421 96 DVPYTFGLIGDLGQTYYSNRT----LTHYELNPIKGQTVLF-VGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTV 170 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~----l~~~~~~~~~~d~vl~-~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 170 (407)
...++|+.++|+|........ ++++.+. +|+.+++ +||++...... .........+.+..+ -.-+.++
T Consensus 658 ~~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~--~~~~l~ld~GD~~~gs~~~--~~~~g~~~~~~ln~l---g~d~~~~ 730 (1163)
T PRK09419 658 NWELTILHTNDFHGHLDGAAKRVTKIKEVKEE--NPNTILVDAGDVYQGSLYS--NLLKGLPVLKMMKEM---GYDASTF 730 (1163)
T ss_pred ceEEEEEEEeecccCCCCHHHHHHHHHHHHhh--CCCeEEEecCCCCCCcchh--hhcCChHHHHHHhCc---CCCEEEe
Confidence 356999999999965433333 3333333 6777655 99998543211 111122333343332 2346699
Q ss_pred CCCccccCCC-----CCCcc---cccccc-ccccc-------CCCCC-CCCCCeEEEEecCcE--EEEEEecccc--C--
Q 040421 171 GNHEIDFAPQ-----LGEAI---PFKPFA-NRFHL-------PYRAP-YSTAPFWYSIRRASA--HIIVMSCYSA--F-- 227 (407)
Q Consensus 171 GNHD~~~~~~-----~~~~~---~~~~~~-~~f~~-------P~~~~-~~~~~~~ysf~~g~v--~fi~Lds~~~--~-- 227 (407)
||||+.+... ..... .-..|. ..|.+ ...+. ...-..|.-++.+++ -||.|-+... .
T Consensus 731 GNHEfd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~ 810 (1163)
T PRK09419 731 GNHEFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTS 810 (1163)
T ss_pred cccccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccC
Confidence 9999864321 00000 000000 00110 00000 001124556677774 5666654211 0
Q ss_pred ----C--CChHHHHHHHHhccccC-CCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhC-CCcEEEeccccccc
Q 040421 228 ----G--KYTPQYKWLEKEFPKVN-RSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEY-KVDVVFAAHVHAYE 299 (407)
Q Consensus 228 ----~--~~~~Q~~WL~~~L~~~~-~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~ 299 (407)
. ......+.+++.+++.. ..++..+|++.|......... ..+ ....|.++. +||++|.||.|..-
T Consensus 811 p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~~-----~~~~lA~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 811 PGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GEI-----TGLELAKKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred CCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--ccc-----HHHHHHHhCCCCCEEEeCCCCccc
Confidence 0 01122223333322221 146779999999986432211 111 123344443 79999999999753
No 76
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=98.06 E-value=6.9e-06 Score=73.09 Aligned_cols=68 Identities=19% Similarity=0.070 Sum_probs=39.6
Q ss_pred EEEecCCCCCCchhhHHHhhhC-------CCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhh-----hccCCeEEc
Q 040421 102 GLIGDLGQTYYSNRTLTHYELN-------PIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERN-----AAYQPWIWT 169 (407)
Q Consensus 102 ~~~gD~~~~~~~~~~l~~~~~~-------~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~-----~~~~P~~~~ 169 (407)
+++||+|........+-+...- ..+.|.++++||++.... +. .+..+.+..+ ....+++++
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~----~~---~~vl~~l~~l~~~~~~~~~~v~~l 73 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGP----DV---IEILWLLYKLEQEAAKAGGKVHFL 73 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCc----CH---HHHHHHHHHHHHHHHhcCCeEEEe
Confidence 3689999875433222211110 126799999999996422 11 1223333222 234689999
Q ss_pred cCCCccc
Q 040421 170 VGNHEID 176 (407)
Q Consensus 170 ~GNHD~~ 176 (407)
+||||..
T Consensus 74 ~GNHE~~ 80 (208)
T cd07425 74 LGNHELM 80 (208)
T ss_pred eCCCcHH
Confidence 9999984
No 77
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.04 E-value=7.9e-06 Score=80.11 Aligned_cols=74 Identities=12% Similarity=0.065 Sum_probs=45.8
Q ss_pred cEEEEEecCCCCCCc--h-------hhHHH---hhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc-cCC
Q 040421 99 YTFGLIGDLGQTYYS--N-------RTLTH---YELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA-YQP 165 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~--~-------~~l~~---~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~P 165 (407)
+||++++|+|.+... . ..+.. ++.. .+||+||++||++..... .......+.+++..+.. .+|
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~-~~~D~viIaGDifD~~~p---~~~a~~~~~~~l~~L~~~~~~ 76 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQE-HQVDAIIVAGDIFDTGSP---PSYARELYNRFVVNLQQTGCQ 76 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHh-cCCCEEEECCccccCCCC---cHHHHHHHHHHHHHHHhcCCc
Confidence 589999999987421 0 11222 2223 389999999999954321 11111223344444432 589
Q ss_pred eEEccCCCccc
Q 040421 166 WIWTVGNHEID 176 (407)
Q Consensus 166 ~~~~~GNHD~~ 176 (407)
+++++||||..
T Consensus 77 v~~I~GNHD~~ 87 (407)
T PRK10966 77 LVVLAGNHDSV 87 (407)
T ss_pred EEEEcCCCCCh
Confidence 99999999974
No 78
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.04 E-value=1.4e-05 Score=76.78 Aligned_cols=75 Identities=17% Similarity=0.047 Sum_probs=45.7
Q ss_pred cEEEEEecCCCCCCc---------hhhHHHh---hhCCCCCceEEEcCCccccCCCCCCCchhhhHHHH-HHhhhh-ccC
Q 040421 99 YTFGLIGDLGQTYYS---------NRTLTHY---ELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGR-FIERNA-AYQ 164 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~---------~~~l~~~---~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~-~~~~~~-~~~ 164 (407)
+||+.+||+|.+... ...++++ +.+ .++|+||++||++..... ..........+ +++.+. ..+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~-~~vD~VliaGDlfD~~~~--~~~~~~~~~~~~l~~~L~~~gi 77 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKA-HGITTWIQLGDTFDVRKA--ITQNTMNFVREKIFDLLKEAGI 77 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHH-cCCCEEEECCcccCCCCC--CCHHHHHHHHHHHHHHHHHCCC
Confidence 589999999987432 1223332 222 389999999999954321 11122221222 233342 368
Q ss_pred CeEEccCCCccc
Q 040421 165 PWIWTVGNHEID 176 (407)
Q Consensus 165 P~~~~~GNHD~~ 176 (407)
|+++++||||..
T Consensus 78 ~v~~I~GNHD~~ 89 (340)
T PHA02546 78 TLHVLVGNHDMY 89 (340)
T ss_pred eEEEEccCCCcc
Confidence 999999999974
No 79
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00017 Score=73.47 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=97.1
Q ss_pred CCCCCcEEEEEecCCCCCC------------chhh----HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHH
Q 040421 94 GPDVPYTFGLIGDLGQTYY------------SNRT----LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFI 157 (407)
Q Consensus 94 ~~~~~~~f~~~gD~~~~~~------------~~~~----l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~ 157 (407)
.....++|+...|+|.... .... +++..++ .+..++|.+||++........ ........+.|
T Consensus 22 ~~~~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~-~~~~llld~GD~~~G~~l~~~-~~~g~~~~~~m 99 (517)
T COG0737 22 AETVKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAE-NKNVLLLDAGDLIQGSPLSDY-LTKGEPTVDLL 99 (517)
T ss_pred cCceeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhh-cCCeEEEeCCcccCCcccccc-ccCCChHHHHH
Confidence 3457899999999997543 1212 2233333 255789999999976443221 12233334444
Q ss_pred hhhhccCCeEEccCCCccccCCCCCCcccccccccccccC--------CCC-CCCCCCeEEEEecCcE--EEEEEeccc-
Q 040421 158 ERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLP--------YRA-PYSTAPFWYSIRRASA--HIIVMSCYS- 225 (407)
Q Consensus 158 ~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P--------~~~-~~~~~~~~ysf~~g~v--~fi~Lds~~- 225 (407)
..+. .=..++||||+.+... .+..+......| ... ....-+.|.-++.+++ -+|.+.+..
T Consensus 100 N~m~---yDa~tiGNHEFd~g~~-----~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~ 171 (517)
T COG0737 100 NALG---YDAMTLGNHEFDYGLE-----ALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTI 171 (517)
T ss_pred hhcC---CcEEeecccccccCHH-----HHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcc
Confidence 4321 2256999999964311 001111111111 000 0112245777888874 566666411
Q ss_pred -cC---C-----CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccc
Q 040421 226 -AF---G-----KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVH 296 (407)
Q Consensus 226 -~~---~-----~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H 296 (407)
.+ . ......+++++.+.+.....+..+|++.|.+........... ........ .++|+++.||.|
T Consensus 172 ~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~~-~~~~~~~~-----~~iD~i~~GH~H 245 (517)
T COG0737 172 PTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASEV-PGDVDVAV-----PGIDLIIGGHSH 245 (517)
T ss_pred cccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccccc-cccccccc-----cCcceEeccCCc
Confidence 11 1 112344555555544332337789999999976543221100 00000000 349999999999
Q ss_pred cc
Q 040421 297 AY 298 (407)
Q Consensus 297 ~y 298 (407)
.+
T Consensus 246 ~~ 247 (517)
T COG0737 246 TV 247 (517)
T ss_pred cc
Confidence 64
No 80
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.92 E-value=0.0001 Score=75.57 Aligned_cols=194 Identities=14% Similarity=0.056 Sum_probs=88.4
Q ss_pred CCCcEEEEEecCCCCCC-------chhh----HHHhhhC---CCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh
Q 040421 96 DVPYTFGLIGDLGQTYY-------SNRT----LTHYELN---PIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA 161 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~-------~~~~----l~~~~~~---~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
...++|+.++|+|.... .... ++++.++ ....-++|.+||++...... .-.......+++..+
T Consensus 32 ~~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s--~~~~g~~~i~~mN~~- 108 (551)
T PRK09558 32 TYKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPES--DLQDAEPDFRGMNLI- 108 (551)
T ss_pred ceEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhh--hhcCCchhHHHHhcC-
Confidence 35799999999997532 1122 2223211 11346889999998542210 001111223333322
Q ss_pred ccCCeEEccCCCccccCCCC-C---CcccccccccccccCCCCCCCCCCeEEEEecCcE--EEEEEecccc--C------
Q 040421 162 AYQPWIWTVGNHEIDFAPQL-G---EAIPFKPFANRFHLPYRAPYSTAPFWYSIRRASA--HIIVMSCYSA--F------ 227 (407)
Q Consensus 162 ~~~P~~~~~GNHD~~~~~~~-~---~~~~~~~~~~~f~~P~~~~~~~~~~~ysf~~g~v--~fi~Lds~~~--~------ 227 (407)
-.=..++||||+.+.... . ....|.-..........+.. .-..|.-++.+++ -||.+-+... +
T Consensus 109 --g~Da~tlGNHEFD~G~~~L~~~~~~a~fp~l~aNv~~~~~g~~-~~~py~i~~~~G~kIgiiG~~t~~~~~~~~~~~~ 185 (551)
T PRK09558 109 --GYDAMAVGNHEFDNPLSVLRKQEKWAKFPFLSANIYQKSTGER-LFKPYAIFDRQGLKIAVIGLTTEDTAKIGNPEYF 185 (551)
T ss_pred --CCCEEcccccccCcCHHHHHHhhccCCCCEEEEEEEECCCCCc-ccCCeEEEEECCEEEEEEEEeccccccccCCCCc
Confidence 122557899999753210 0 00011000000000110111 1134556677875 4555543211 0
Q ss_pred -----CCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccc
Q 040421 228 -----GKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYE 299 (407)
Q Consensus 228 -----~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~ 299 (407)
....+..+-+-++|++. .+...+|++.|.......... ........+..-+...+||++|.||.|..-
T Consensus 186 ~~~~f~d~~e~a~~~v~~Lk~~--~~~D~IV~LsH~G~~~~~~~~--~~~~~d~~la~~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 186 TDIEFRDPAEEAKKVIPELKQT--EKPDVIIALTHMGHYDDGEHG--SNAPGDVEMARSLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred CCceECCHHHHHHHHHHHHHhc--cCCCEEEEEeccccccCCccC--CCCccHHHHHHhCCccCceEEEeCCCCccc
Confidence 00111222233334421 467799999998875322110 000001122222222379999999999753
No 81
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.91 E-value=3.7e-05 Score=64.34 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=40.3
Q ss_pred EEEecCCCCCCc-hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhh-hhccCCeEEccCCCc
Q 040421 102 GLIGDLGQTYYS-NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIER-NAAYQPWIWTVGNHE 174 (407)
Q Consensus 102 ~~~gD~~~~~~~-~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~-~~~~~P~~~~~GNHD 174 (407)
+++||.+..... ...++++.+...+.|++|++||..-... +. ..|...+.. ....+|.|++-|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~----~~---~~~~~y~~g~~~~pipTyf~ggn~~ 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDE----DD---EELEAYKDGSKKVPIPTYFLGGNNP 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCcc----ch---hhHHHHhcCCccCCCCEEEECCCCC
Confidence 367888765322 2334444433357899999999985322 11 234444332 335689999999997
No 82
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.85 E-value=0.00013 Score=68.98 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=26.1
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhC-CCcEEEeccccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEY-KVDVVFAAHVHAYE 299 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~ 299 (407)
++...+|+++|..-+. .+ ..|.++. +||++|.||.|.+-
T Consensus 206 ~gvD~II~LsH~g~~~---------~d-----~~lA~~v~gIDvIigGHsH~~l 245 (313)
T cd08162 206 QGINKIILLSHLQQIS---------IE-----QALAALLSGVDVIIAGGSNTLL 245 (313)
T ss_pred CCCCEEEEEecccccc---------hH-----HHHHhcCCCCCEEEeCCCCccC
Confidence 4577899999973111 11 1244443 79999999999763
No 83
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.78 E-value=0.00023 Score=72.80 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCC------
Q 040421 126 KGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYR------ 199 (407)
Q Consensus 126 ~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~------ 199 (407)
+.-++|.+||++...... .-.....-.+++..+ --=..++||||+.+... .+..+.+...+|.-
T Consensus 49 ~n~l~ldaGD~~~gs~~~--~~~~g~~~i~~~N~~---g~Da~~lGNHEFd~G~~-----~l~~~~~~~~fp~l~aNv~~ 118 (550)
T TIGR01530 49 KNALVLHAGDAIIGTLYF--TLFGGRADAALMNAA---GFDFFTLGNHEFDAGNE-----GLKEFLEPLEIPVLSANVIP 118 (550)
T ss_pred CCeEEEECCCCCCCccch--hhcCCHHHHHHHhcc---CCCEEEeccccccCCHH-----HHHHHHHhCCCCEEEEeeec
Confidence 346889999999643221 011112222333322 22366899999964321 01111111111110
Q ss_pred -CCC---CCCCeEEEEecCc--EEEEEEecccc-C---CCC------h--HHHHHHHHhccccCCCCCCeEEEEeecccc
Q 040421 200 -APY---STAPFWYSIRRAS--AHIIVMSCYSA-F---GKY------T--PQYKWLEKEFPKVNRSETPWLIVLMHCPLY 261 (407)
Q Consensus 200 -~~~---~~~~~~ysf~~g~--v~fi~Lds~~~-~---~~~------~--~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~ 261 (407)
... ..-..|.-++.++ +-||.|.+... . ... + +-.+-..+.|++ .+...+|++.|...-
T Consensus 119 ~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~~f~d~~~~~~~~v~~Lk~---~g~D~II~lsH~g~~ 195 (550)
T TIGR01530 119 DAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDIKFIDEIAAAQIAANALKQ---QGINKIILLSHAGFE 195 (550)
T ss_pred CCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCceEECCHHHHHHHHHHHHHh---CCCCEEEEEecCCcH
Confidence 000 0113455667777 56777754211 0 000 1 112222234443 457789999997531
Q ss_pred ccCCCCCCCChhHHHHHHHHHHh-CCCcEEEeccccccc
Q 040421 262 NSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
. . ..+.++ -+||++|+||+|.+-
T Consensus 196 ~--------d-------~~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 196 K--------N-------CEIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred H--------H-------HHHHhcCCCCCEEEeCCCCccc
Confidence 1 0 123333 279999999999854
No 84
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.71 E-value=5e-05 Score=65.56 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=31.4
Q ss_pred CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 125 IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 125 ~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
.+||.++++||+++.... .....+... ..+......+|+++++||||..
T Consensus 40 ~~~d~lii~GDl~~~~~~--~~~~~~~~~-~~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 40 YGPERLIILGDLKHSFGG--LSRQEFEEV-AFLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred cCCCEEEEeCcccccccc--cCHHHHHHH-HHHHhccCCCeEEEEcccCccc
Confidence 489999999999965321 111222221 1233334568999999999984
No 85
>PHA02239 putative protein phosphatase
Probab=97.59 E-value=0.00014 Score=65.92 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=41.6
Q ss_pred cEEEEEecCCCCCCch-hhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSN-RTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~-~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
++++++||.|...... +.++.+.......|.++++||++..... .. +....+++.+....++++++||||..
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~---s~---~v~~~l~~~~~~~~~~~~l~GNHE~~ 73 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKR---SK---DVVNYIFDLMSNDDNVVTLLGNHDDE 73 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCC---hH---HHHHHHHHHhhcCCCeEEEECCcHHH
Confidence 4789999999653222 2223332221135999999999964321 11 11222222222345899999999974
No 86
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.44 E-value=0.00022 Score=63.54 Aligned_cols=63 Identities=19% Similarity=0.107 Sum_probs=39.8
Q ss_pred EEEEEecCCCCCCchhhHHHhhhC---CCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELN---PIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~---~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
|++++||+|.... .+.++.+. ..++|.++++||+++... .. .+..+.+. . .+++++.||||..
T Consensus 2 ri~~isDiHg~~~---~l~~~l~~~~~~~~~d~~~~~GD~v~~g~----~~---~~~~~~l~---~-~~~~~v~GNhe~~ 67 (207)
T cd07424 2 RDFVVGDIHGHYS---LLQKALDAVGFDPARDRLISVGDLIDRGP----ES---LACLELLL---E-PWFHAVRGNHEQM 67 (207)
T ss_pred CEEEEECCCCCHH---HHHHHHHHcCCCCCCCEEEEeCCcccCCC----CH---HHHHHHHh---c-CCEEEeECCChHH
Confidence 6899999996543 33333221 126899999999996432 11 12233332 2 4689999999974
No 87
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=97.41 E-value=0.00026 Score=65.52 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=42.3
Q ss_pred cEEEEEecCCCCCCchhh-HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRT-LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~-l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
++++++||+|........ ++++.-+ .+.|.++++||++.... +. .+..+.+..+ ..++++++||||..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~-~~~D~li~lGDlVdrGp----~s---~~vl~~l~~l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFD-PAKDTLWLVGDLVNRGP----DS---LEVLRFVKSL--GDSAVTVLGNHDLH 69 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCC-CCCCEEEEeCCccCCCc----CH---HHHHHHHHhc--CCCeEEEecChhHH
Confidence 468999999976543332 2222212 26799999999996432 11 2233333333 34688999999984
No 88
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.38 E-value=0.0019 Score=68.27 Aligned_cols=47 Identities=21% Similarity=0.158 Sum_probs=28.2
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAY 298 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 298 (407)
..+..||++.|..+-...... ..+... ..|.+--+||++|.||.|..
T Consensus 308 ~GaDvIIaLsH~G~~~d~~~~--~~En~~---~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 308 AGADIVLVLSHSGIGDDQYEV--GEENVG---YQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred cCCCEEEEEeCCCcccccccc--cccchh---hHHhcCCCCCEEEECCCCCc
Confidence 467899999998864321110 111111 12323358999999999984
No 89
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=97.32 E-value=0.00043 Score=62.24 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=46.4
Q ss_pred cEEEEEecCCCCCCc--------------hhhHHHhh---hCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh
Q 040421 99 YTFGLIGDLGQTYYS--------------NRTLTHYE---LNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA 161 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~--------------~~~l~~~~---~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~ 161 (407)
-+.++++|.|.+... .+.++++. +. .+||.+|++||+...... ...++.+.+.++.+
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~-~~~d~vIi~GDl~h~~~~----~~~~~~~~~~l~~~- 88 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADK-YGIEALIINGDLKHEFKK----GLEWRFIREFIEVT- 88 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhh-cCCCEEEEcCccccccCC----hHHHHHHHHHHHhc-
Confidence 467899999987421 12344333 33 379999999999965331 13455555555553
Q ss_pred ccCCeEEccCCCcc
Q 040421 162 AYQPWIWTVGNHEI 175 (407)
Q Consensus 162 ~~~P~~~~~GNHD~ 175 (407)
..+++.++||||.
T Consensus 89 -~~~v~~V~GNHD~ 101 (225)
T TIGR00024 89 -FRDLILIRGNHDA 101 (225)
T ss_pred -CCcEEEECCCCCC
Confidence 3599999999996
No 90
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.31 E-value=0.0019 Score=72.01 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-CCCcEEEeccccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAYE 299 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y~ 299 (407)
.++..+|++.|...-..... ...+ .....|.++ -+||++|.||.|..-
T Consensus 233 ~gaDvII~l~H~G~~~~~~~--~~~e---n~~~~la~~~~gID~Il~GHsH~~~ 281 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQS--SGAE---DSVYDLAEKTKGIDAIVAGHQHGLF 281 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCC--CCcc---hHHHHHHHhCCCCcEEEeCCCcccc
Confidence 46789999999986432211 1111 122345544 389999999999864
No 91
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=97.29 E-value=0.042 Score=48.92 Aligned_cols=194 Identities=19% Similarity=0.252 Sum_probs=104.9
Q ss_pred cEEEEEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 99 YTFGLIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
+|++++||+=..... ..-|..+.++ -++||+|..|-++-.. ..-.|+.+..+++. .+- +.++|||=|
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~k-yk~dfvI~N~ENaa~G-----~Git~k~y~~l~~~---G~d-viT~GNH~w 70 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSK-YKIDFVIVNGENAAGG-----FGITEKIYKELLEA---GAD-VITLGNHTW 70 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHh-hcCcEEEEcCccccCC-----cCCCHHHHHHHHHh---CCC-EEecccccc
Confidence 589999998654432 1234445555 4899999999998532 12344555555442 233 458999998
Q ss_pred ccCCCCCCcccccccccccccCCCCCC-CCCCeEEEEecCcEEEEEEecccc--CC-CChHHHHHHHHhccccCCCCCCe
Q 040421 176 DFAPQLGEAIPFKPFANRFHLPYRAPY-STAPFWYSIRRASAHIIVMSCYSA--FG-KYTPQYKWLEKEFPKVNRSETPW 251 (407)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~f~~P~~~~~-~~~~~~ysf~~g~v~fi~Lds~~~--~~-~~~~Q~~WL~~~L~~~~~~~~~~ 251 (407)
... .. ..|..-..++--|.|-+. ..+..|.-|+..+.++.+++-... .. ..+.-+.-+++.|...+ .+.+.
T Consensus 71 d~~-ei---~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~~d~l~~~~~-~~~~~ 145 (266)
T COG1692 71 DQK-EI---LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKAADKLLDEIK-LGTDL 145 (266)
T ss_pred cch-HH---HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHHHHHHHHhCc-cCCce
Confidence 521 10 011111122333444322 223456667776766666554211 11 12223444555555532 34578
Q ss_pred EEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEE-e
Q 040421 252 LIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYIT-I 330 (407)
Q Consensus 252 ~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv-~ 330 (407)
+||-+|.-.-+... +| -++-+-+|.+|+.=|+|.-..-..+ -++|+-||. .
T Consensus 146 iiVDFHAEtTSEK~-----------a~-g~yldGrvsavvGTHTHV~TaD~rI----------------L~~GTayiTDv 197 (266)
T COG1692 146 IIVDFHAETTSEKN-----------AF-GWYLDGRVSAVVGTHTHVPTADERI----------------LPKGTAYITDV 197 (266)
T ss_pred EEEEccccchhhhh-----------hh-heEEcCeEEEEEeccCcccccccee----------------cCCCcEEEecC
Confidence 99999964322111 11 1233457889999999975443332 247788886 4
Q ss_pred CCCCC
Q 040421 331 GDGGN 335 (407)
Q Consensus 331 G~gG~ 335 (407)
|.-|.
T Consensus 198 GMtG~ 202 (266)
T COG1692 198 GMTGP 202 (266)
T ss_pred ccccc
Confidence 44444
No 92
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.29 E-value=0.00041 Score=63.03 Aligned_cols=71 Identities=24% Similarity=0.283 Sum_probs=42.7
Q ss_pred cEEEEEecCCCCCCchhh-HHHhhhCC--------CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEc
Q 040421 99 YTFGLIGDLGQTYYSNRT-LTHYELNP--------IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWT 169 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~-l~~~~~~~--------~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~ 169 (407)
.|++++||.|........ ++++.-.+ .+.|.++++||++.... .-.+-.+++..+.....++++
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~-------~s~evl~~l~~l~~~~~~~~v 73 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGP-------DSPEVLRLVMSMVAAGAALCV 73 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCC-------CHHHHHHHHHHHhhCCcEEEE
Confidence 379999999987543332 23221110 13589999999996422 112233444444333468899
Q ss_pred cCCCccc
Q 040421 170 VGNHEID 176 (407)
Q Consensus 170 ~GNHD~~ 176 (407)
.||||..
T Consensus 74 ~GNHE~~ 80 (234)
T cd07423 74 PGNHDNK 80 (234)
T ss_pred ECCcHHH
Confidence 9999974
No 93
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.11 E-value=0.00086 Score=61.33 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=40.9
Q ss_pred cEEEEEecCCCCCCchhh-HHHhhhCC-------CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEcc
Q 040421 99 YTFGLIGDLGQTYYSNRT-LTHYELNP-------IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTV 170 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~-l~~~~~~~-------~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 170 (407)
+|++++||+|........ ++++.-.. ..-|.++++||++.... +. .+-.+.+..+.....++++.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp----~S---~~vl~~~~~~~~~~~~~~l~ 73 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGP----HS---LRMIEIVWELVEKKAAYYVP 73 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCc----Ch---HHHHHHHHHHhhCCCEEEEe
Confidence 478999999976543222 22221110 13478999999997532 11 11222233333345789999
Q ss_pred CCCccc
Q 040421 171 GNHEID 176 (407)
Q Consensus 171 GNHD~~ 176 (407)
||||..
T Consensus 74 GNHE~~ 79 (245)
T PRK13625 74 GNHCNK 79 (245)
T ss_pred CccHHH
Confidence 999963
No 94
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.11 E-value=0.0007 Score=60.73 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=40.1
Q ss_pred cEEEEEecCCCCCCchhhH-HHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRTL-THYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l-~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
-|++++||+|........+ +.+.-. .+.|.++++||++..... . .+..+.+. . ..++.+.||||..
T Consensus 15 ~ri~visDiHg~~~~l~~~l~~~~~~-~~~d~l~~lGD~vdrG~~----~---~~~l~~l~---~-~~~~~v~GNHE~~ 81 (218)
T PRK09968 15 RHIWVVGDIHGEYQLLQSRLHQLSFC-PETDLLISVGDNIDRGPE----S---LNVLRLLN---Q-PWFISVKGNHEAM 81 (218)
T ss_pred CeEEEEEeccCCHHHHHHHHHhcCCC-CCCCEEEECCCCcCCCcC----H---HHHHHHHh---h-CCcEEEECchHHH
Confidence 3899999999764333222 222112 267999999999965321 1 11222222 2 2578899999973
No 95
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.03 E-value=0.0013 Score=56.42 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=28.3
Q ss_pred CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 125 IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 125 ~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
.++|.|+++||++.... ... +.+.++.+ ..|++.++||||..
T Consensus 41 ~~~d~vi~~GDl~~~~~-----~~~---~~~~l~~~--~~~~~~v~GNHD~~ 82 (168)
T cd07390 41 GPDDTVYHLGDFSFGGK-----AGT---ELELLSRL--NGRKHLIKGNHDSS 82 (168)
T ss_pred CCCCEEEEeCCCCCCCC-----hHH---HHHHHHhC--CCCeEEEeCCCCch
Confidence 47899999999996422 111 13333332 35899999999974
No 96
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.99 E-value=0.023 Score=60.23 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhC-CCcEEEeccccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEY-KVDVVFAAHVHAYE 299 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~-~vdlvl~GH~H~y~ 299 (407)
..+..+|++.|..+-.... ..+.+. .-. .+++. +||++|.||.|..-
T Consensus 243 ~GaDvIIaLsH~G~~~d~~---~~~~en--a~~-~l~~v~gID~IlgGHsH~~~ 290 (780)
T PRK09418 243 EGADVIVALAHSGVDKSGY---NVGMEN--ASY-YLTEVPGVDAVLMGHSHTEV 290 (780)
T ss_pred cCCCEEEEEeccCcccccc---cccchh--hhH-HHhcCCCCCEEEECCCCCcc
Confidence 4577899999987643211 111111 111 13443 89999999999764
No 97
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=96.97 E-value=0.0011 Score=59.59 Aligned_cols=66 Identities=21% Similarity=0.181 Sum_probs=40.1
Q ss_pred cEEEEEecCCCCCCchh-hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNR-TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~-~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
-|++++||.|....... .++++... .+.|-++++||++.... +. .+-.+.+.. ..++.+.||||..
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~-~~~D~li~lGDlvDrGp----~s---~~vl~~l~~----~~~~~v~GNHE~~ 83 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFD-PWRDLLISVGDLIDRGP----QS---LRCLQLLEE----HWVRAVRGNHEQM 83 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCC-cccCEEEEcCcccCCCc----CH---HHHHHHHHc----CCceEeeCchHHH
Confidence 38999999998654332 23333222 25789999999996532 11 112222222 2467899999964
No 98
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=96.97 E-value=0.0038 Score=58.12 Aligned_cols=177 Identities=20% Similarity=0.217 Sum_probs=94.7
Q ss_pred cEEEEEecCCCCCCc-hhhHHHhhhC-CCCCceEEEcCCccccCCCCC----CCchhhhHHHHHHh----hhhccCCeEE
Q 040421 99 YTFGLIGDLGQTYYS-NRTLTHYELN-PIKGQTVLFVGDLSYADDYPF----HDNNRWDTWGRFIE----RNAAYQPWIW 168 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~-~~~l~~~~~~-~~~~d~vl~~GD~~y~~~~~~----~~~~~~~~~~~~~~----~~~~~~P~~~ 168 (407)
+|++|-|++|..-+. ..++..+.+. ..+.|++|++||.-.-.+... .-...+..+..+++ ...+.+|.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 589999999976432 3444544433 147899999999854322110 01223333333332 3456788899
Q ss_pred ccCCCccccCCCCCCcccccccccccccCCCCCCCCCCeEE-----EEecCcEEEEEEecc---ccCCC-------C---
Q 040421 169 TVGNHEIDFAPQLGEAIPFKPFANRFHLPYRAPYSTAPFWY-----SIRRASAHIIVMSCY---SAFGK-------Y--- 230 (407)
Q Consensus 169 ~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~y-----sf~~g~v~fi~Lds~---~~~~~-------~--- 230 (407)
+=||||.. +|. ..+|..|= ...+.|| ...+|++|+-.|..- .+|.. +
T Consensus 81 IGGNHEAs------------nyL--~eLpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~s 145 (456)
T KOG2863|consen 81 IGGNHEAS------------NYL--QELPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNS 145 (456)
T ss_pred ecCchHHH------------HHH--HhcccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccch
Confidence 99999973 121 11222110 0112333 356789999988862 22211 0
Q ss_pred -------hHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCCh-------hH----------HHHHHHHHHhCC
Q 040421 231 -------TPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGE-------PM----------RVLYEPWFVEYK 286 (407)
Q Consensus 231 -------~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~-------~~----------~~~l~~l~~~~~ 286 (407)
-.+.+= ..|++ -+.+--|.++|.=+-+-.. +++.. -+ ...++.||++-+
T Consensus 146 tiRsiYHvR~~dV--~~Lkq---lk~piDIfLSHDWP~GI~~--yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~Lk 218 (456)
T KOG2863|consen 146 TIRSIYHVRISDV--AKLKQ---LKHPIDIFLSHDWPRGIYY--YGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLK 218 (456)
T ss_pred hhhhhhhhhhhhh--HHHHh---hcCcceEEeecCCCcchhh--cCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhC
Confidence 112221 12222 1234457777754322111 11111 01 235678999999
Q ss_pred CcEEEeccccc
Q 040421 287 VDVVFAAHVHA 297 (407)
Q Consensus 287 vdlvl~GH~H~ 297 (407)
...+|+.|.|.
T Consensus 219 P~yWfsAHLH~ 229 (456)
T KOG2863|consen 219 PQYWFSAHLHV 229 (456)
T ss_pred cchhhhhhHhh
Confidence 99999999996
No 99
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.96 E-value=0.016 Score=52.99 Aligned_cols=136 Identities=13% Similarity=0.127 Sum_probs=75.3
Q ss_pred EEEEecCCCCCCch-----hhHHHhhh-C---------CCCCceEEEcCCccccCCCCCC---------------Cchhh
Q 040421 101 FGLIGDLGQTYYSN-----RTLTHYEL-N---------PIKGQTVLFVGDLSYADDYPFH---------------DNNRW 150 (407)
Q Consensus 101 f~~~gD~~~~~~~~-----~~l~~~~~-~---------~~~~d~vl~~GD~~y~~~~~~~---------------~~~~~ 150 (407)
+++++|.+.+.... +.+..++. + ..+..-+|++||.+...+.... .....
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 67889998775421 22222221 1 1244579999999975431100 02234
Q ss_pred hHHHHHHhhhhccCCeEEccCCCccccCCCCCCcccccccccccccCCCC----CCCCCCeEEEEecCcEEEEEEeccc-
Q 040421 151 DTWGRFIERNAAYQPWIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRA----PYSTAPFWYSIRRASAHIIVMSCYS- 225 (407)
Q Consensus 151 ~~~~~~~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~----~~~~~~~~ysf~~g~v~fi~Lds~~- 225 (407)
+.+.+++..+...+|+...|||||-.. .... +.++.. ..| |... -....|. |.|++++++|++.....
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~-~~lP-Qqplh~--~lf--p~s~~~~~~~~vtNP-~~~~i~g~~vLgtsGqni 154 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPAN-HSLP-QQPLHR--CLF--PKSSNYSTLNLVTNP-YEFSIDGVRVLGTSGQNV 154 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCccc-ccCC-CCCCCH--HHh--hcccccCCcEEeCCC-eEEEECCEEEEEECCCCH
Confidence 455667777888999999999999742 1111 111100 011 1100 0011122 56888999999988753
Q ss_pred ----cCCCChHHHHHHHHhccc
Q 040421 226 ----AFGKYTPQYKWLEKEFPK 243 (407)
Q Consensus 226 ----~~~~~~~Q~~WL~~~L~~ 243 (407)
.+...+.-++.|++.|+.
T Consensus 155 ~Di~ky~~~~~~l~~me~~L~w 176 (257)
T cd07387 155 DDILKYSSLESRLDILERTLKW 176 (257)
T ss_pred HHHHHhCCCCCHHHHHHHHHHh
Confidence 133444557778887764
No 100
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.87 E-value=0.0017 Score=59.49 Aligned_cols=65 Identities=23% Similarity=0.291 Sum_probs=40.1
Q ss_pred EEEecCCCCCCchhh-HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 102 GLIGDLGQTYYSNRT-LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 102 ~~~gD~~~~~~~~~~-l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
.++||.|......+. ++++.-+ .+.|.++++||++.... + -.+..+++..+. ..+..++||||..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~-~~~D~Li~lGDlVdRGp----~---s~evl~~l~~l~--~~v~~VlGNHD~~ 67 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFD-PAKDRLWLVGDLVNRGP----D---SLETLRFVKSLG--DSAKTVLGNHDLH 67 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCC-CCCCEEEEecCcCCCCc----C---HHHHHHHHHhcC--CCeEEEcCCchHH
Confidence 579999986543332 2333222 25799999999996532 1 122334444332 3678999999984
No 101
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.83 E-value=0.0064 Score=63.18 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=28.0
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-CCCcEEEecccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAY 298 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y 298 (407)
..+..+|++.|...-...... ..+... ..+.+ -+||++|+||.|..
T Consensus 194 ~gaDvII~LsH~G~~~d~~~~--~~en~~----~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 194 KGADIIVALAHSGISADPYQP--GAENSA----YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred cCCCEEEEEeccCcCCCcccc--ccchHH----HHHhcCCCCCEEEcCCCCcc
Confidence 457799999998864321100 111111 12344 38999999999974
No 102
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.80 E-value=0.0021 Score=57.81 Aligned_cols=69 Identities=19% Similarity=0.244 Sum_probs=40.1
Q ss_pred EEEEecCCCCCCchh-hHHHhhhCC------CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCC
Q 040421 101 FGLIGDLGQTYYSNR-TLTHYELNP------IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNH 173 (407)
Q Consensus 101 f~~~gD~~~~~~~~~-~l~~~~~~~------~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNH 173 (407)
+.++||+|....... .++++.... ...|.++++||++.... +. .+-.+.+..+...-.++.+.|||
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp----~S---~~vl~~l~~l~~~~~~~~l~GNH 73 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGP----EI---RELLEIVKSMVDAGHALAVMGNH 73 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCC----CH---HHHHHHHHHhhcCCCEEEEEccC
Confidence 357999998654332 223322110 13579999999996532 11 22233333333334688999999
Q ss_pred ccc
Q 040421 174 EID 176 (407)
Q Consensus 174 D~~ 176 (407)
|..
T Consensus 74 E~~ 76 (222)
T cd07413 74 EFN 76 (222)
T ss_pred cHH
Confidence 974
No 103
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=96.77 E-value=0.013 Score=53.29 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=37.2
Q ss_pred HHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 236 WLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 236 WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
-+++.++++. .++..+||+.|...-.. ......+..+...+.+.++|+|+.||.|..+-..
T Consensus 163 ~~~~~i~~lr-~~~D~vIv~~H~G~e~~-----~~p~~~~~~la~~l~~~G~D~IiG~H~Hv~q~~E 223 (239)
T cd07381 163 RIAADIAEAK-KKADIVIVSLHWGVEYS-----YYPTPEQRELARALIDAGADLVIGHHPHVLQGIE 223 (239)
T ss_pred HHHHHHHHHh-hcCCEEEEEecCcccCC-----CCCCHHHHHHHHHHHHCCCCEEEcCCCCcCCCeE
Confidence 3444444432 23779999999754211 1112233355555556799999999999887543
No 104
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=96.71 E-value=0.0023 Score=57.53 Aligned_cols=66 Identities=20% Similarity=0.071 Sum_probs=38.3
Q ss_pred EEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc-cCCeEEccCCCccc
Q 040421 103 LIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA-YQPWIWTVGNHEID 176 (407)
Q Consensus 103 ~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~P~~~~~GNHD~~ 176 (407)
++||+|........+-+.... .+.|.+|++||++.... . ..+....+..+.. ..+++.+.||||..
T Consensus 2 ~igDiHg~~~~l~~~l~~~~~-~~~d~li~lGD~vdrg~----~---~~~~l~~l~~~~~~~~~~~~l~GNHe~~ 68 (225)
T cd00144 2 VIGDIHGCLDDLLRLLEKIGF-PPNDKLIFLGDYVDRGP----D---SVEVIDLLLALKILPDNVILLRGNHEDM 68 (225)
T ss_pred EEeCCCCCHHHHHHHHHHhCC-CCCCEEEEECCEeCCCC----C---cHHHHHHHHHhcCCCCcEEEEccCchhh
Confidence 689999654322222111222 26899999999996532 1 1122233322211 35799999999984
No 105
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=96.64 E-value=0.024 Score=51.57 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=32.7
Q ss_pred CCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 248 ETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 248 ~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
++..+||+.|-..-... .....+..+...+.+.++|+|+.||.|..+...
T Consensus 172 ~~D~vIv~~H~G~e~~~-----~p~~~~~~~A~~l~~~G~DvIiG~H~H~~~~~e 221 (239)
T smart00854 172 KADVVIVSLHWGVEYQY-----EPTDEQRELAHALIDAGADVVIGHHPHVLQPIE 221 (239)
T ss_pred cCCEEEEEecCccccCC-----CCCHHHHHHHHHHHHcCCCEEEcCCCCcCCceE
Confidence 57799999997652111 111222344445555799999999999887554
No 106
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.64 E-value=0.033 Score=58.13 Aligned_cols=46 Identities=15% Similarity=0.150 Sum_probs=27.5
Q ss_pred CCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-CCCcEEEecccccc
Q 040421 247 SETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-YKVDVVFAAHVHAY 298 (407)
Q Consensus 247 ~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~~vdlvl~GH~H~y 298 (407)
..+..+|++.|...-...... ..+.. ... +.+ -+||++|.||.|..
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~--~aen~---~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKA--MAENS---VYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCcCCCCccc--cccch---hHH-HhcCCCCCEEEeCCCCcc
Confidence 457799999998763221100 01111 111 233 47999999999975
No 107
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=96.62 E-value=0.0037 Score=57.76 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCCchhh-HHHhhhCC----CCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhcc---CCeEEccC
Q 040421 100 TFGLIGDLGQTYYSNRT-LTHYELNP----IKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAY---QPWIWTVG 171 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~-l~~~~~~~----~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~---~P~~~~~G 171 (407)
+++++||+|........ ++.+.+.. ...+.+|++||++.... +. .+..+++..+... ..++++.|
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGP----dS---~eVld~L~~l~~~~~~~~vv~LrG 75 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGP----ET---RKVIDFLISLPEKHPKQRHVFLCG 75 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCC----CH---HHHHHHHHHhhhcccccceEEEec
Confidence 68899999987544332 33333221 13568999999996532 11 2223333333222 24788999
Q ss_pred CCccc
Q 040421 172 NHEID 176 (407)
Q Consensus 172 NHD~~ 176 (407)
|||..
T Consensus 76 NHE~~ 80 (304)
T cd07421 76 NHDFA 80 (304)
T ss_pred CChHH
Confidence 99963
No 108
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=96.53 E-value=0.0064 Score=54.25 Aligned_cols=75 Identities=17% Similarity=0.111 Sum_probs=47.9
Q ss_pred CcEEEEEecCCCCCCc-----------------hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhh
Q 040421 98 PYTFGLIGDLGQTYYS-----------------NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERN 160 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~~-----------------~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~ 160 (407)
.-+.++++|.|.+... ...++++++. .+|+-+|.+||+-.+-+. .....|.....+++.+
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~-~~p~~lIilGD~KH~~~~--~~~~e~~~~~~f~~~~ 95 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIER-YGPKRLIILGDLKHEFGK--SLRQEKEEVREFLELL 95 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHh-cCCCEEEEcCccccccCc--cccccHHHHHHHHHHh
Confidence 3478899999987531 1123334454 489999999999876542 1233444434444443
Q ss_pred hccCCeEEccCCCccc
Q 040421 161 AAYQPWIWTVGNHEID 176 (407)
Q Consensus 161 ~~~~P~~~~~GNHD~~ 176 (407)
... -++++.||||-.
T Consensus 96 ~~~-evi~i~GNHD~~ 110 (235)
T COG1407 96 DER-EVIIIRGNHDNG 110 (235)
T ss_pred ccC-cEEEEeccCCCc
Confidence 332 599999999974
No 109
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=96.43 E-value=0.005 Score=56.73 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=40.5
Q ss_pred EEEEEecCCCCCCchhh-HHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRT-LTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~-l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
+..++||.|........ ++++.-+ ...|-++++||++.... + -.+-.+++..+. ..+..+.||||..
T Consensus 2 ~~YvIGDIHGc~daL~~LL~~i~f~-~~~D~l~~lGDlVdRGP----~---slevL~~l~~l~--~~~~~VlGNHD~~ 69 (279)
T TIGR00668 2 ATYLIGDLHGCYDELQALLERVEFD-PGQDTLWLTGDLVARGP----G---SLEVLRYVKSLG--DAVRLVLGNHDLH 69 (279)
T ss_pred cEEEEEcccCCHHHHHHHHHHhCcC-CCCCEEEEeCCccCCCC----C---HHHHHHHHHhcC--CCeEEEEChhHHH
Confidence 46789999987544333 3333223 25689999999997532 1 122233343332 2356899999973
No 110
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.049 Score=44.43 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEEeCCCCCCCCCcccCCCCCCCccceeeC
Q 040421 277 LYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYITIGDGGNQEGLAKEMTEPQPRYSAYREA 356 (407)
Q Consensus 277 ~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv~G~gG~~~~~~~~~~~~~p~~~~~~~~ 356 (407)
.|.-|-++.+||+.+.||+|.++... .+|-.||--|++-.... ..+..+ .
T Consensus 98 sL~~LaRqldvDILl~G~Th~f~Aye-------------------~eg~ffvnPGSaTGAfn----~~~t~~-------~ 147 (183)
T KOG3325|consen 98 SLALLARQLDVDILLTGHTHKFEAYE-------------------HEGKFFVNPGSATGAFN----VSDTDI-------I 147 (183)
T ss_pred HHHHHHHhcCCcEEEeCCceeEEEEE-------------------eCCcEEeCCCcccCCCc----ccccCC-------C
Confidence 45566777899999999999998775 25556777777633211 111111 2
Q ss_pred cceEEEEEEeeccEEEEEEEEcCCCceeeeeeEEEEe
Q 040421 357 SFGHGILDVKNRTHAYFGWHRNQDDYAVEADSVWLHN 393 (407)
Q Consensus 357 ~~Gf~~l~v~~~~~~~~~~~~~~~g~~~~~D~~~i~~ 393 (407)
.+-|..|++...+.+.+- ++--||+|- .|.+...|
T Consensus 148 ~PSFvLmDiqg~~~v~Yv-Y~lidgeVk-Vdki~ykK 182 (183)
T KOG3325|consen 148 VPSFVLMDIQGSTVVTYV-YRLIDGEVK-VDKIEYKK 182 (183)
T ss_pred CCceEEEEecCCEEEEEE-eeeeCCcEE-EEEEEecC
Confidence 467999999655544333 344578874 78877654
No 111
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.13 E-value=0.015 Score=42.91 Aligned_cols=66 Identities=26% Similarity=0.302 Sum_probs=41.7
Q ss_pred eeccCCCCCcEEEEEEcCCCC----CCCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 3 ITQGDHEGKGVIVSWVTPDEP----GSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 3 l~~g~~~~~~~~v~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
|.+.....+++.|.|..+... ..-.|+|....+... ... .... .-...++|.+|+|+|.|.++|..
T Consensus 6 l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~-~~~---~~~~------~~~~~~~i~~L~p~t~Y~~~v~a 75 (85)
T PF00041_consen 6 LSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSD-WQE---VTVP------GNETSYTITGLQPGTTYEFRVRA 75 (85)
T ss_dssp EEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSE-EEE---EEEE------TTSSEEEEESCCTTSEEEEEEEE
T ss_pred eEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEeccccee-eee---eeee------eeeeeeeeccCCCCCEEEEEEEE
Confidence 445555678999999998411 234677766654331 111 1111 11236788999999999999975
No 112
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=95.96 E-value=0.021 Score=51.67 Aligned_cols=172 Identities=15% Similarity=0.157 Sum_probs=94.9
Q ss_pred ceEEEcCCccccCCCCCCC---chhhhHHHHHHh----hhhccCCeEEccCCCccccCCC-----C--CCccccc-cc--
Q 040421 128 QTVLFVGDLSYADDYPFHD---NNRWDTWGRFIE----RNAAYQPWIWTVGNHEIDFAPQ-----L--GEAIPFK-PF-- 190 (407)
Q Consensus 128 d~vl~~GD~~y~~~~~~~~---~~~~~~~~~~~~----~~~~~~P~~~~~GNHD~~~~~~-----~--~~~~~~~-~~-- 190 (407)
--++..||++...+....+ ..+...|...++ +....+|+|.-+||||..-..- + .+...|. .|
T Consensus 128 lGlV~ggDitddgggq~~qprEg~ql~qf~~RYsq~vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr 207 (392)
T COG5555 128 LGLVEGGDITDDGGGQSFQPREGNQLKQFELRYSQDVGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHR 207 (392)
T ss_pred eeEEeecceeccCCCcccCccccchhhchHhhhccCCCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcC
Confidence 3467788999876643322 222333322222 2334589999999999853210 0 0000000 00
Q ss_pred ccccccCCCCCC--CCCCeEEEEecCcEEEEEEecccc-CCC-ChHHHHHHHHhccccCCCCCCeEEEEeeccc--cccC
Q 040421 191 ANRFHLPYRAPY--STAPFWYSIRRASAHIIVMSCYSA-FGK-YTPQYKWLEKEFPKVNRSETPWLIVLMHCPL--YNSY 264 (407)
Q Consensus 191 ~~~f~~P~~~~~--~~~~~~ysf~~g~v~fi~Lds~~~-~~~-~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~--~~~~ 264 (407)
...|.-|.-.+. ..-...||++.|++|.+-+-.... -.. ...-+-||+.+|...... .+-++++.|.-. +++.
T Consensus 208 ~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf~Gd~~~ga~sslpwlk~dl~~~aad-grpv~LfqhyGwdtfste 286 (392)
T COG5555 208 SDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRFIGDAEPGANSSLPWLKVDLIYSAAD-GRPVYLFQHYGWDTFSTE 286 (392)
T ss_pred cCcccCCCCCcccccccchheeccccceeEEEEeeeccccCCCccccCcceeccceeeccC-CCceeehhhhCccceecc
Confidence 111111111111 122456899999998887765211 011 123467999999875433 345888888865 3322
Q ss_pred CCCC--------C------CChhHHHHHHHHHHhCCCcEEEecccccccc
Q 040421 265 VHHY--------M------EGEPMRVLYEPWFVEYKVDVVFAAHVHAYER 300 (407)
Q Consensus 265 ~~~~--------~------~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r 300 (407)
.++. + .....|..+...++-|+|...+.||.|.+..
T Consensus 287 awdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYNvvg~fhGhkhd~~m 336 (392)
T COG5555 287 AWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYNVVGTFHGHKHDFNM 336 (392)
T ss_pred ccCchhcccccCCCCCCCCCCCCCcchHHHhhcCceeEEeccccccccce
Confidence 2110 0 1134577888889999999999999998743
No 113
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=95.77 E-value=0.024 Score=55.81 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=33.4
Q ss_pred CCCcEEEEEecCCCCCCc---------hhhHHH---hhhCCCCCceEEEcCCccccCC
Q 040421 96 DVPYTFGLIGDLGQTYYS---------NRTLTH---YELNPIKGQTVLFVGDLSYADD 141 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~---------~~~l~~---~~~~~~~~d~vl~~GD~~y~~~ 141 (407)
...+||++..|.|.++.. ..++.. ++++ .+.|+||.+||++.++.
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e-~~VDmiLlGGDLFHeNk 67 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQE-NDVDMILLGGDLFHENK 67 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHh-cCCcEEEecCcccccCC
Confidence 368999999999998642 233333 3444 48999999999998765
No 114
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=95.77 E-value=0.017 Score=54.68 Aligned_cols=70 Identities=16% Similarity=0.031 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh--ccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA--AYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~GNHD~~ 176 (407)
++.++||+|........+-+....+...+-+|++||++.... ...+. ..++-.+. ..--++.+.||||..
T Consensus 52 ~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~------~s~Ev-l~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 52 QVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGK------RSIEI-LIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCC------CcHHH-HHHHHHHhhcCCCcEEEecCchhhh
Confidence 678999999865432222111112112367999999997532 11122 22222222 123488899999985
No 115
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.076 Score=53.17 Aligned_cols=182 Identities=15% Similarity=0.115 Sum_probs=90.4
Q ss_pred CCCcEEEEEecCCCCCCc-------------h----hhHHHhhhCCCCCce-EEEcCCccccCCCCCCC--chhhhHHHH
Q 040421 96 DVPYTFGLIGDLGQTYYS-------------N----RTLTHYELNPIKGQT-VLFVGDLSYADDYPFHD--NNRWDTWGR 155 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~-------------~----~~l~~~~~~~~~~d~-vl~~GD~~y~~~~~~~~--~~~~~~~~~ 155 (407)
....+|..-+|+|....+ . ..++++.+. ..+|. ++-+||.-...|+.... +..|..++-
T Consensus 40 ~~~~nf~hTtdthG~~~~h~~~~~~~~~~G~f~~f~~~~k~~a~~-~~~dvl~~dtGD~hdGtg~sd~~~~~g~~t~~l~ 118 (602)
T KOG4419|consen 40 WGQPNFIHTTDTHGWLGSHLRDARYDADFGDFAAFALRMKELADR-KGVDVLLVDTGDLHDGTGLSDATDPPGIYTNFLF 118 (602)
T ss_pred cccccceeeccccccccccccchhhhhhhhhHHHHHHHHHHHHhc-cCCCEEEEecccccCCceeeeccCCchHHHHHHH
Confidence 356788888888765321 1 123344333 35664 56699998776653221 113333322
Q ss_pred HHhhhhccCC-eEEccCCCccccCCCCCCcccccccccccccCCCC-----------CCCCCCeEEEEec-CcEEEEEEe
Q 040421 156 FIERNAAYQP-WIWTVGNHEIDFAPQLGEAIPFKPFANRFHLPYRA-----------PYSTAPFWYSIRR-ASAHIIVMS 222 (407)
Q Consensus 156 ~~~~~~~~~P-~~~~~GNHD~~~~~~~~~~~~~~~~~~~f~~P~~~-----------~~~~~~~~ysf~~-g~v~fi~Ld 222 (407)
+..| =..++||||.... ..... .+..|...|..|... -......++.|.- .+++...+-
T Consensus 119 ------~~~~yD~l~lGNHEl~~~-~ve~l-~~~~f~~~~k~~~la~Nv~~~~~~~~~~p~~~~~~t~~t~~~~~v~~vG 190 (602)
T KOG4419|consen 119 ------KMMPYDILTLGNHELYQA-NVENL-TEEYFLPAWKGPYLASNVQIFDSSNSFVPFGLEYATFLTPHGVVVLAVG 190 (602)
T ss_pred ------hcCccchhhhcchhhhhh-hhhcc-chhhhhhhhccceeecceEEecCchhhccccccceEEeccCceEEEEEE
Confidence 2233 2458999999532 11100 001122222222111 1122344555532 333332222
Q ss_pred ccc-cCC-----------CChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHh-C-CCc
Q 040421 223 CYS-AFG-----------KYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVE-Y-KVD 288 (407)
Q Consensus 223 s~~-~~~-----------~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~-~-~vd 288 (407)
.-. .++ ..-.|.+|-.+.++. .+.+-+++++|.|.-... .++.+...+.+ + +++
T Consensus 191 ~~~~~f~~~~n~~~v~~veei~~~~~~~~m~~~---~~idlii~lgH~~~~~~~---------e~~~~~~~ir~~~p~t~ 258 (602)
T KOG4419|consen 191 FLCASFSGAANRTVVVPVEEITQSEWEQDMVNT---TDIDLIIALGHSPVRDDD---------EWKSLHAEIRKVHPNTP 258 (602)
T ss_pred EeeccccccCCCcccccHHHHhccchHHHHhhc---cCccEEEEecccccccch---------hhhhHHHHHhhhCCCCc
Confidence 110 111 113467787777776 567789999999853211 11223333444 4 678
Q ss_pred E-EEecccccc
Q 040421 289 V-VFAAHVHAY 298 (407)
Q Consensus 289 l-vl~GH~H~y 298 (407)
+ ||.||.|..
T Consensus 259 IqviGGHshir 269 (602)
T KOG4419|consen 259 IQVIGGHSHIR 269 (602)
T ss_pred eEEECchhhhh
Confidence 8 999999964
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=95.61 E-value=0.023 Score=53.58 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=39.2
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhcc--CCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAY--QPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~P~~~~~GNHD~~ 176 (407)
+++++||+|........+-..... ...+-+|++||++..... .-+-...+-.+... .-++.+.||||..
T Consensus 44 ~i~ViGDIHG~~~dL~~l~~~~g~-~~~~~ylFLGDyVDRG~~-------s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 44 PVTVCGDIHGQFYDLLKLFEVGGS-PANTRYLFLGDYVDRGYF-------SIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEECCccCCCCC-------hHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 588999999765433222222222 144789999999965321 11112222222222 3478899999984
No 117
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=95.12 E-value=0.043 Score=50.89 Aligned_cols=69 Identities=13% Similarity=0.055 Sum_probs=39.5
Q ss_pred cEEEEEecCCCCCCchh-hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh--ccCCeEEccCCCcc
Q 040421 99 YTFGLIGDLGQTYYSNR-TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA--AYQPWIWTVGNHEI 175 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~-~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~GNHD~ 175 (407)
-+++++||.|....... .+... .. ...+-++++||++..... . -+-...+..+. ...-++.+.||||.
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~-~~-~~~~~~vfLGD~VDrG~~----s---~e~l~~l~~lk~~~p~~v~llrGNHE~ 98 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLN-GP-PPDTNYVFLGDYVDRGPF----S---IEVILLLFALKILYPNRVVLLRGNHES 98 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHc-CC-CCCceEEEeCCccCCCCC----h---HHHHHHHHHHHhcCCCCEEEEeccccH
Confidence 36889999997654332 22222 22 245788999999964321 1 11122222221 22357899999998
Q ss_pred c
Q 040421 176 D 176 (407)
Q Consensus 176 ~ 176 (407)
.
T Consensus 99 ~ 99 (271)
T smart00156 99 R 99 (271)
T ss_pred H
Confidence 4
No 118
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=95.07 E-value=0.34 Score=43.80 Aligned_cols=192 Identities=18% Similarity=0.224 Sum_probs=85.7
Q ss_pred EEEecCCCCCCc---hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccccC
Q 040421 102 GLIGDLGQTYYS---NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDFA 178 (407)
Q Consensus 102 ~~~gD~~~~~~~---~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~~ 178 (407)
+++||.=..... ...|..+.++ .++||||..|.++.. |. . -..+.+.++++ ..+- ..+.|||=|...
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~-~~~DfVIaNgENaa~-G~-G---it~~~~~~L~~---~GvD-viT~GNH~wdkk 70 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEE-YGIDFVIANGENAAG-GF-G---ITPKIAEELFK---AGVD-VITMGNHIWDKK 70 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG---G-SEEEEE-TTTTT-TS-S-----HHHHHHHHH---HT-S-EEE--TTTTSST
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhh-cCCCEEEECCcccCC-CC-C---CCHHHHHHHHh---cCCC-EEecCcccccCc
Confidence 357776432211 2334556666 489999999999853 21 1 11122222222 2333 448999998521
Q ss_pred CCCCCcccccccccccccCCCCCC-CCCCeEEEEecCcEEEEEEecccc--CCCChHHHHHHHHhccccCCCCCCeEEEE
Q 040421 179 PQLGEAIPFKPFANRFHLPYRAPY-STAPFWYSIRRASAHIIVMSCYSA--FGKYTPQYKWLEKEFPKVNRSETPWLIVL 255 (407)
Q Consensus 179 ~~~~~~~~~~~~~~~f~~P~~~~~-~~~~~~ysf~~g~v~fi~Lds~~~--~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~ 255 (407)
+...+-.-..+.--|.|-+. ..+..|..++.++.++-+++-... .....--+..+++.|++. +.+.+.+||=
T Consensus 71 ----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~d~~l~~l-~~~~~~iiVD 145 (253)
T PF13277_consen 71 ----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAADRLLEEL-KEETDIIIVD 145 (253)
T ss_dssp ----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHHHHHHHH------SEEEEE
T ss_pred ----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHHHHHHHhc-cccCCEEEEE
Confidence 11111111122223444332 345668888888888777775321 111222233344444332 2467789999
Q ss_pred eeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccccccccccccceeeccCCcccccCCCCCceEEE-eCCCC
Q 040421 256 MHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSERMSNIAYNVTNALCSPVSDQSAPVYIT-IGDGG 334 (407)
Q Consensus 256 ~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~~~~~~~~~~~~g~~~~~~~~~g~~~iv-~G~gG 334 (407)
+|.=. .....+ .-.+-.-+|.+|+.=|+|.-..-..+ -++||-||+ .|.-|
T Consensus 146 FHAEa-----------TSEK~A-~g~~lDGrvsaV~GTHTHVqTaDerI----------------Lp~GTaYiTDvGMtG 197 (253)
T PF13277_consen 146 FHAEA-----------TSEKQA-MGWYLDGRVSAVVGTHTHVQTADERI----------------LPGGTAYITDVGMTG 197 (253)
T ss_dssp EE-S------------HHHHHH-HHHHHBTTBSEEEEESSSS-BS--EE-----------------TTS-EEES---EBE
T ss_pred eecCc-----------HHHHHH-HHHHhCCcEEEEEeCCCCccCchhhc----------------cCCCCEEEecCcccc
Confidence 99532 112222 23455678999999999975322222 147788885 44444
Q ss_pred CC
Q 040421 335 NQ 336 (407)
Q Consensus 335 ~~ 336 (407)
..
T Consensus 198 ~~ 199 (253)
T PF13277_consen 198 PY 199 (253)
T ss_dssp ES
T ss_pred Cc
Confidence 43
No 119
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=95.07 E-value=0.096 Score=54.25 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=52.0
Q ss_pred eeccCCCCCcEEEEEEcCCCCCC----CEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 3 ITQGDHEGKGVIVSWVTPDEPGS----NTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 3 l~~g~~~~~~~~v~W~t~~~~~~----~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
|-+.....+++++.|.-++.+.. ..|+|-++...... .. . ...-...++|+||+|+|.|-+||..
T Consensus 449 ~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~-~~----~------~~t~~~~~ti~gL~p~t~YvfqVRa 517 (996)
T KOG0196|consen 449 LRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERS-YS----T------LKTKTTTATITGLKPGTVYVFQVRA 517 (996)
T ss_pred EEEeeeccCceEEecCCCCCCCCcceeEEEEEeeccccccc-ee----E------EecccceEEeeccCCCcEEEEEEEE
Confidence 44445567899999999875543 35566655421110 00 0 0112446899999999999999964
Q ss_pred ------CCceeeEEEEcCCC
Q 040421 79 ------GNATRQFSFTTPPG 92 (407)
Q Consensus 79 ------~~~s~~~~F~T~p~ 92 (407)
|..|....|.|.+.
T Consensus 518 rT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 518 RTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred ecccCCCCCCCceeeeecCc
Confidence 35688889999875
No 120
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=95.03 E-value=0.042 Score=52.97 Aligned_cols=71 Identities=15% Similarity=0.039 Sum_probs=38.3
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc--cCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA--YQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~~ 176 (407)
-++.++||+|........+-.....+..-+.+|++||++..... . -+-...+..+.. ..-++.+.||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~------S-lEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAW------G-LETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCC------h-HHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 36899999997654322221111111112458999999964321 1 111222222222 23478999999985
No 121
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=94.97 E-value=0.042 Score=51.30 Aligned_cols=69 Identities=19% Similarity=0.128 Sum_probs=38.7
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhh--ccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNA--AYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~GNHD~~ 176 (407)
.+.++||.|........+-..... ...+-+|++||++..... --+....+..+. ....++.+.||||..
T Consensus 43 ~i~vvGDIHG~~~dL~~ll~~~~~-~~~~~~lfLGDyVDRG~~-------s~evl~ll~~lk~~~p~~v~llrGNHE~~ 113 (285)
T cd07415 43 PVTVCGDIHGQFYDLLELFRVGGD-PPDTNYLFLGDYVDRGYY-------SVETFLLLLALKVRYPDRITLLRGNHESR 113 (285)
T ss_pred CEEEEEeCCCCHHHHHHHHHHcCC-CCCCeEEEEeEECCCCcC-------HHHHHHHHHHHhhcCCCcEEEEecccchH
Confidence 488899999765433222112222 144678899999964321 111122222222 234589999999974
No 122
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=94.71 E-value=0.056 Score=50.67 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCCchh-hHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc--cCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNR-TLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA--YQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~-~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~~ 176 (407)
.++++||+|....... .+.. ... ...+-+|++||++..... . .+. ...+..+.. ..-++.+.||||..
T Consensus 51 ~i~viGDIHG~~~~L~~l~~~-~~~-~~~~~~lfLGDyVDRG~~----s--~e~-i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 51 PLKICGDIHGQYYDLLRLFEY-GGF-PPESNYLFLGDYVDRGKQ----S--LET-ICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred ceEEEEecCCCHHHHHHHHHh-cCC-CCcceEEEEeeEecCCCC----c--HHH-HHHHHHhhhhCCCcEEEEecccchh
Confidence 5889999997643332 2222 222 144678899999965321 1 111 122222221 22478899999984
No 123
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=94.67 E-value=0.093 Score=51.41 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCcEEEEEecCCCCCCch-----hhHHHhhhCC----CCCceEEEcCCccccCCCCC-CC--------chhhhHHHHHH
Q 040421 96 DVPYTFGLIGDLGQTYYSN-----RTLTHYELNP----IKGQTVLFVGDLSYADDYPF-HD--------NNRWDTWGRFI 157 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~-----~~l~~~~~~~----~~~d~vl~~GD~~y~~~~~~-~~--------~~~~~~~~~~~ 157 (407)
...+++++++|.|.+.... ..+-.+..-+ .+...++.+||.+..-|... .. ..+++.+.+++
T Consensus 223 ~e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 223 DERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred CcceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 4678899999999875321 1111222211 24478999999997544321 11 23566667777
Q ss_pred hhhhccCCeEEccCCCccc
Q 040421 158 ERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 158 ~~~~~~~P~~~~~GNHD~~ 176 (407)
..+...+-++..|||||..
T Consensus 303 ~~vp~~I~v~i~PGnhDa~ 321 (481)
T COG1311 303 DQVPEHIKVFIMPGNHDAV 321 (481)
T ss_pred hhCCCCceEEEecCCCCcc
Confidence 7777778899999999983
No 124
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=94.31 E-value=0.081 Score=49.77 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCcEEEeccccc
Q 040421 275 RVLYEPWFVEYKVDVVFAAHVHA 297 (407)
Q Consensus 275 ~~~l~~l~~~~~vdlvl~GH~H~ 297 (407)
.+.+...+++.+.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46788899999999999999854
No 125
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=94.27 E-value=0.14 Score=42.28 Aligned_cols=67 Identities=21% Similarity=0.198 Sum_probs=40.3
Q ss_pred EEEEEecCCCCCCc--------------hhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCC
Q 040421 100 TFGLIGDLGQTYYS--------------NRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQP 165 (407)
Q Consensus 100 ~f~~~gD~~~~~~~--------------~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P 165 (407)
.+.++||+|.+... ...+..+.+-...-|.+.++||++.... .-......++.|.. -
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n-------~~~~a~~IlerLnG--r 75 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGAN-------RERAAGLILERLNG--R 75 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccc-------hhhHHHHHHHHcCC--c
Confidence 46778999876421 1123334433323488999999985421 12334555565544 3
Q ss_pred eEEccCCCcc
Q 040421 166 WIWTVGNHEI 175 (407)
Q Consensus 166 ~~~~~GNHD~ 175 (407)
...++||||-
T Consensus 76 khlv~GNhDk 85 (186)
T COG4186 76 KHLVPGNHDK 85 (186)
T ss_pred EEEeeCCCCC
Confidence 4889999997
No 126
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=94.27 E-value=0.072 Score=50.36 Aligned_cols=69 Identities=22% Similarity=0.303 Sum_probs=38.1
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhc--cCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAA--YQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~--~~P~~~~~GNHD~~ 176 (407)
+++++||+|........+-.....+ ..+-.|++||++..... ..+. ...+..+.. ...++.+.||||..
T Consensus 60 ~i~vvGDIHG~~~dL~~l~~~~g~~-~~~~ylfLGDyVDRG~~------s~ev-l~ll~~lki~~p~~v~llRGNHE~~ 130 (320)
T PTZ00480 60 PLKICGDVHGQYFDLLRLFEYGGYP-PESNYLFLGDYVDRGKQ------SLET-ICLLLAYKIKYPENFFLLRGNHECA 130 (320)
T ss_pred CeEEEeecccCHHHHHHHHHhcCCC-CcceEEEeceecCCCCC------cHHH-HHHHHHhcccCCCceEEEecccchh
Confidence 5888999997643322221122221 34678899999965321 1111 222222221 23578999999984
No 127
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=93.85 E-value=0.11 Score=49.28 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=38.0
Q ss_pred cEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhh--hccCCeEEccCCCccc
Q 040421 99 YTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERN--AAYQPWIWTVGNHEID 176 (407)
Q Consensus 99 ~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~--~~~~P~~~~~GNHD~~ 176 (407)
-++.++||+|........+-.....+..-|-+|++||++..... .-+. ...+-.+ ....-++.+.||||..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~------S~Ev-l~ll~~lki~~p~~v~lLRGNHE~~ 132 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSF------SVEV-ILTLFAFKLLYPNHFHLNRGNHETD 132 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCC------hHHH-HHHHHHhhhccCCceEEEeeccchH
Confidence 47899999997643322111111111123579999999965321 1111 1222122 1223468899999974
No 128
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=93.51 E-value=2.1 Score=39.05 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=41.2
Q ss_pred CCCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCe---EEccCC
Q 040421 96 DVPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPW---IWTVGN 172 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~---~~~~GN 172 (407)
....||+.++|+|..... +... ..-|+++++||...- + ..+....|.+.+ .+.|. +++.||
T Consensus 59 ~~~~r~VcisdtH~~~~~------i~~~-p~gDvlihagdfT~~-g----~~~ev~~fn~~~----gslph~yKIVIaGN 122 (305)
T KOG3947|consen 59 PGYARFVCISDTHELTFD------INDI-PDGDVLIHAGDFTNL-G----LPEEVIKFNEWL----GSLPHEYKIVIAGN 122 (305)
T ss_pred CCceEEEEecCcccccCc------cccC-CCCceEEeccCCccc-c----CHHHHHhhhHHh----ccCcceeeEEEeec
Confidence 367899999999965432 1222 367999999999842 1 112222233322 23343 678999
Q ss_pred CccccC
Q 040421 173 HEIDFA 178 (407)
Q Consensus 173 HD~~~~ 178 (407)
||...+
T Consensus 123 HELtFd 128 (305)
T KOG3947|consen 123 HELTFD 128 (305)
T ss_pred cceeec
Confidence 999654
No 129
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=93.25 E-value=0.21 Score=45.78 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=43.8
Q ss_pred HHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 233 QYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 233 Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
+.+.+.++++++. .+..++||++|.-.-. . ......+..+...+-+.++|+|+.+|.|..|-..
T Consensus 169 ~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~----~-~~p~~~q~~~a~~lidaGaDiIiG~HpHv~q~~E 232 (250)
T PF09587_consen 169 GIERIKEDIREAR-KKADVVIVSLHWGIEY----E-NYPTPEQRELARALIDAGADIIIGHHPHVIQPVE 232 (250)
T ss_pred hHHHHHHHHHHHh-cCCCEEEEEeccCCCC----C-CCCCHHHHHHHHHHHHcCCCEEEeCCCCcccceE
Confidence 3477888887765 5678999999974211 1 1112233455555556899999999999988665
No 130
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=93.02 E-value=0.094 Score=49.13 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCcEEEeccccc
Q 040421 275 RVLYEPWFVEYKVDVVFAAHVHA 297 (407)
Q Consensus 275 ~~~l~~l~~~~~vdlvl~GH~H~ 297 (407)
.+.....+++++.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 45778899999999999999854
No 131
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=92.54 E-value=0.25 Score=46.80 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCCcEEEecccc
Q 040421 275 RVLYEPWFVEYKVDVVFAAHVH 296 (407)
Q Consensus 275 ~~~l~~l~~~~~vdlvl~GH~H 296 (407)
.+++...++++++++++=||.=
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe~ 263 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHEC 263 (311)
T ss_pred HHHHHHHHHHCCCeEEEEechh
Confidence 4677889999999999999973
No 132
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=91.95 E-value=0.76 Score=33.38 Aligned_cols=62 Identities=23% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCCCcEEEEEEcCCCC----CCCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 7 DHEGKGVIVSWVTPDEP----GSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 7 ~~~~~~~~v~W~t~~~~----~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
.....++.|.|...... ....|.|............. ...-...+.|.+|.|++.|.++|..
T Consensus 11 ~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~----------~~~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 11 DVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEV----------TPGSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred EecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeec----------cCCcccEEEEccccCCCEEEEEEEE
Confidence 33458999999987432 12344444433111111110 0023456788999999999999954
No 133
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=88.73 E-value=1.9 Score=30.09 Aligned_cols=61 Identities=21% Similarity=0.297 Sum_probs=34.4
Q ss_pred CCcEEEEEEcCCCCC--CCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 10 GKGVIVSWVTPDEPG--SNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 10 ~~~~~v~W~t~~~~~--~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
++++.|+|..+.... ...+.|........ ....... .....+...|.+|+|++.|.++|..
T Consensus 14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~------~~~~~~~~~i~~L~~~~~Y~v~v~a 76 (83)
T smart00060 14 STSVTLSWEPPPDDGITGYIVGYRVEYREEG--SSWKEVN------VTPSSTSYTLTGLKPGTEYEFRVRA 76 (83)
T ss_pred CCEEEEEECCCCCCCCCccEEEEEEEEecCC--CccEEEE------ecCCccEEEEeCcCCCCEEEEEEEE
Confidence 348999998653221 24555655432111 0000000 0011467889999999999999864
No 134
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=84.22 E-value=0.6 Score=41.36 Aligned_cols=76 Identities=8% Similarity=0.057 Sum_probs=39.7
Q ss_pred EEEEecCCCCCCc--hhhHHHhhhC---CCCCceEEEcCCccccCCCCC--CC---chhh-hHH----HHHHhhhhccCC
Q 040421 101 FGLIGDLGQTYYS--NRTLTHYELN---PIKGQTVLFVGDLSYADDYPF--HD---NNRW-DTW----GRFIERNAAYQP 165 (407)
Q Consensus 101 f~~~gD~~~~~~~--~~~l~~~~~~---~~~~d~vl~~GD~~y~~~~~~--~~---~~~~-~~~----~~~~~~~~~~~P 165 (407)
|++++|.+.+... .+.+.++.+. ..+|+.+|++|+.+....... .. .... ..+ .+.++.+...++
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788998887432 3444444321 137999999999996533110 00 0011 111 222334456789
Q ss_pred eEEccCCCccc
Q 040421 166 WIWTVGNHEID 176 (407)
Q Consensus 166 ~~~~~GNHD~~ 176 (407)
++.+||+||..
T Consensus 81 vvlvPg~~D~~ 91 (209)
T PF04042_consen 81 VVLVPGPNDPT 91 (209)
T ss_dssp EEEE--TTCTT
T ss_pred EEEeCCCcccc
Confidence 99999999985
No 135
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=82.19 E-value=2.3 Score=46.49 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=42.9
Q ss_pred eeccCCCCCcEEEEEEcCCCCCC------CEEEEeecCCCCc---eEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEE
Q 040421 3 ITQGDHEGKGVIVSWVTPDEPGS------NTVLYWAENSTLK---QQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYY 73 (407)
Q Consensus 3 l~~g~~~~~~~~v~W~t~~~~~~------~~v~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~ 73 (407)
|.+-.+.+++++|.|..+..... -.++|+..+.... ..+.+ ..+. -.+.+|+|+|.|.
T Consensus 622 l~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~-----------n~~~--~l~~~Lep~T~Y~ 688 (1381)
T KOG4221|consen 622 LSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKG-----------NTTQ--YLFNGLEPNTQYR 688 (1381)
T ss_pred eEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeeccc-----------chhh--hHhhcCCCCceEE
Confidence 44445567889999988753322 1344444332211 11111 1122 2457899999999
Q ss_pred EEeCc------CCceeeEEEEcCC
Q 040421 74 YEVGV------GNATRQFSFTTPP 91 (407)
Q Consensus 74 Y~v~~------~~~s~~~~F~T~p 91 (407)
+||.. +..|....+.|+-
T Consensus 689 vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 689 VRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred EEEEEeccCCCCCcccceeccCcc
Confidence 99954 3456666777753
No 136
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=74.80 E-value=20 Score=39.69 Aligned_cols=91 Identities=18% Similarity=0.242 Sum_probs=52.2
Q ss_pred eccCCCCCcEEEEEEcCCCCCCCEEEEee----cCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc-
Q 040421 4 TQGDHEGKGVIVSWVTPDEPGSNTVLYWA----ENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV- 78 (407)
Q Consensus 4 ~~g~~~~~~~~v~W~t~~~~~~~~v~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~- 78 (407)
+.+.-...++.|.|..+..+......|.. .+...+...+ .-.+..+|.||+|.|.|.|||..
T Consensus 528 ~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~-------------~n~~e~ti~gL~k~TeY~~~vvA~ 594 (1381)
T KOG4221|consen 528 QAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVE-------------NNATEYTINGLEKYTEYSIRVVAY 594 (1381)
T ss_pred cccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEe-------------cCccEEEeecCCCccceEEEEEEe
Confidence 33444567899999998644444444433 2111111111 12445678899999999999954
Q ss_pred -----CCceeeEEEEcCCCC--CCCCCcEEEEEecC
Q 040421 79 -----GNATRQFSFTTPPGV--GPDVPYTFGLIGDL 107 (407)
Q Consensus 79 -----~~~s~~~~F~T~p~~--~~~~~~~f~~~gD~ 107 (407)
+..|...+|+|...- .+..+++..+.+-.
T Consensus 595 N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sSt 630 (1381)
T KOG4221|consen 595 NSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSST 630 (1381)
T ss_pred cCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCC
Confidence 345667777775311 11234565554443
No 137
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=70.54 E-value=22 Score=39.01 Aligned_cols=61 Identities=23% Similarity=0.305 Sum_probs=39.3
Q ss_pred CCCcEEEEEEcCC----CCCCCEEEEeecCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 9 EGKGVIVSWVTPD----EPGSNTVLYWAENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 9 ~~~~~~v~W~t~~----~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
.+++|.|.|.... ......|+|+...+... ...... ...-.-.+.|+||+|+|.|++.|..
T Consensus 832 s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~-----~~~~~~----i~~~~~~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 832 SSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEG-----SLSRVQ----IAGNRTSWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred cCceEEEEecCcCccCCccceeEEEEEEcCCCcc-----ccccee----ecCCcceEeeeCCCCCceEEEEEEE
Confidence 4689999996553 23456899999776431 111100 1123445789999999999998854
No 138
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=68.59 E-value=9 Score=34.48 Aligned_cols=69 Identities=20% Similarity=0.251 Sum_probs=35.7
Q ss_pred EEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHh-hhhccCCeEEccCCCccc
Q 040421 101 FGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIE-RNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~P~~~~~GNHD~~ 176 (407)
+.+.||+|......-.+-++-... .-.=-|++||++.. |+ ..-+.|.=++- .+.-.--+..+.||||.+
T Consensus 45 vtvcGDIHGQf~Dllelf~igG~~-~~t~YLFLGDyVDR-G~-----~SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFRIGGDV-PETNYLFLGDYVDR-GY-----YSVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHHhCCCC-CCCceEeecchhcc-cc-----chHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 346899997643322222222221 11235678999965 21 12233332221 112234577899999985
No 139
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=68.31 E-value=5.5 Score=37.96 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEEecCCCCCCchhhHHHhhh-CCCCC-ceEEEcCCccccCCCCCCCchhhhH--HHHHHhhhhccCCeEEccCCCcc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYEL-NPIKG-QTVLFVGDLSYADDYPFHDNNRWDT--WGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~-~~~~~-d~vl~~GD~~y~~~~~~~~~~~~~~--~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
-+.++||.|........+-...- . .| .-.|++||++..... ..+. ++-.++ +.-.--++...||||.
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~--pp~~~ylFLGDYVDRG~~------slE~i~LL~a~K-i~yp~~~~lLRGNHE~ 130 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSF--PPDQNYVFLGDYVDRGKQ------SLETICLLFALK-IKYPENVFLLRGNHEC 130 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCC--CCcccEEEecccccCCcc------ceEEeehhhhhh-hhCCceEEEecccccc
Confidence 45678999987653322222222 2 23 347789999975321 1111 111111 1123468999999998
Q ss_pred c
Q 040421 176 D 176 (407)
Q Consensus 176 ~ 176 (407)
.
T Consensus 131 ~ 131 (331)
T KOG0374|consen 131 A 131 (331)
T ss_pred c
Confidence 5
No 140
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=65.81 E-value=6.9 Score=33.26 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred eEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 251 WLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
..|+++|.|..... . +.+.+++++||+|......
T Consensus 108 ~~i~l~H~~~~~~~------~------------~~~~d~vi~GHtH~~~~~~ 141 (168)
T cd07390 108 RRVYLSHYPILEWN------G------------LDRGSWNLHGHIHSNSPDI 141 (168)
T ss_pred EEEEEEeCCcccCC------C------------CCCCeEEEEeeeCCCCCCC
Confidence 57899997643210 0 3567899999999876554
No 141
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=63.73 E-value=25 Score=32.90 Aligned_cols=19 Identities=37% Similarity=0.604 Sum_probs=15.9
Q ss_pred EEEEEcCCCCCCEEEEEeC
Q 040421 59 HHCTIEDLEFDTKYYYEVG 77 (407)
Q Consensus 59 ~~~~l~gL~p~t~Y~Y~v~ 77 (407)
...+|.+|+|+|.||+.|.
T Consensus 15 t~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 15 TNQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred ceEEeccCCCCCeEEEEEE
Confidence 3456889999999999984
No 142
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=57.22 E-value=20 Score=30.00 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=27.0
Q ss_pred eEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 251 WLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 251 ~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
-.|+++|.|.-+... .+...| ....+.++++.|.||.|. ++..
T Consensus 109 ~~~~LsHyP~~~~~~----~~~~~r----~~y~~~~~~llIHGH~H~-~~~k 151 (186)
T COG4186 109 EDVYLSHYPRPGQDH----PGMESR----FDYLRLRVPLLIHGHLHS-QFPK 151 (186)
T ss_pred eEEEEEeCCCCCCCC----cchhhh----HHHHhccCCeEEeccccc-cccC
Confidence 479999999644221 112222 233456799999999998 4443
No 143
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=56.18 E-value=52 Score=30.66 Aligned_cols=79 Identities=9% Similarity=-0.121 Sum_probs=45.1
Q ss_pred CCcEEEEEecCCCCCCc-hhhHHHhhh----C---CCCCceEEEcCCccccCCCC-CCCchhhhHHHHHHh--------h
Q 040421 97 VPYTFGLIGDLGQTYYS-NRTLTHYEL----N---PIKGQTVLFVGDLSYADDYP-FHDNNRWDTWGRFIE--------R 159 (407)
Q Consensus 97 ~~~~f~~~gD~~~~~~~-~~~l~~~~~----~---~~~~d~vl~~GD~~y~~~~~-~~~~~~~~~~~~~~~--------~ 159 (407)
...+|+++||.+.+... .+.|+++.+ . ...|-.+|+.|+.+...-.. ......+.+.++.+. .
T Consensus 26 ~~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~ 105 (291)
T PTZ00235 26 KRHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKL 105 (291)
T ss_pred CceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChH
Confidence 56799999999987532 223332221 1 02388899999998652100 111122333222222 2
Q ss_pred hhccCCeEEccCCCcc
Q 040421 160 NAAYQPWIWTVGNHEI 175 (407)
Q Consensus 160 ~~~~~P~~~~~GNHD~ 175 (407)
+....-+++|||-.|-
T Consensus 106 L~~~s~fVFVPGpnDP 121 (291)
T PTZ00235 106 ILEHCYLIFIPGINDP 121 (291)
T ss_pred HHhcCeEEEECCCCCC
Confidence 3456778999999996
No 144
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=53.23 E-value=1.1e+02 Score=25.76 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCCEEE--EEeCcCC---ceeeEEEEcCCC
Q 040421 59 HHCTIEDLEFDTKYY--YEVGVGN---ATRQFSFTTPPG 92 (407)
Q Consensus 59 ~~~~l~gL~p~t~Y~--Y~v~~~~---~s~~~~F~T~p~ 92 (407)
..-.+++|.|||+|+ |.|..+. .|.+..-.|.|-
T Consensus 102 saYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 102 SAYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred eeEEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 344678999999998 5555442 233344445443
No 145
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=53.14 E-value=70 Score=30.03 Aligned_cols=22 Identities=32% Similarity=0.458 Sum_probs=17.5
Q ss_pred EEEEEEcCCCCCCEEEEEeCcC
Q 040421 58 IHHCTIEDLEFDTKYYYEVGVG 79 (407)
Q Consensus 58 ~~~~~l~gL~p~t~Y~Y~v~~~ 79 (407)
+-..+|.||+||+.|-..|...
T Consensus 259 v~tetI~~L~PG~~Yl~dV~~~ 280 (300)
T PF10179_consen 259 VTTETIKGLKPGTTYLFDVYVN 280 (300)
T ss_pred cceeecccCCCCcEEEEEEEEe
Confidence 4455799999999998888653
No 146
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=48.32 E-value=26 Score=31.86 Aligned_cols=67 Identities=19% Similarity=0.106 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCchhhHHHhhhCCCCCce-EEEcCCccccCCCCCCCchhhhHHHHHHhhhh--ccCCeEEccCCCccc
Q 040421 101 FGLIGDLGQTYYSNRTLTHYELNPIKGQT-VLFVGDLSYADDYPFHDNNRWDTWGRFIERNA--AYQPWIWTVGNHEID 176 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~l~~~~~~~~~~d~-vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~P~~~~~GNHD~~ 176 (407)
..+.||.|......-.+-++--. .||. .|++||.+...-. . .+-...+-.+. -.--+-.++||||.+
T Consensus 62 vtvcGDvHGqf~dl~ELfkiGG~--~pdtnylfmGDyvdrGy~----S---vetVS~lva~Kvry~~rvtilrGNHEsr 131 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELFKIGGL--APDTNYLFMGDYVDRGYY----S---VETVSLLVALKVRYPDRVTILRGNHESR 131 (319)
T ss_pred eEEecCcchhHHHHHHHHHccCC--CCCcceeeeeeecccccc----h---HHHHHHHHHhhccccceeEEecCchHHH
Confidence 55689999764322222222222 3443 5678999964221 1 11122222121 123466789999985
No 147
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.18 E-value=32 Score=33.96 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=41.1
Q ss_pred CcEEEEEecCCCCCC-chhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCC
Q 040421 98 PYTFGLIGDLGQTYY-SNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNH 173 (407)
Q Consensus 98 ~~~f~~~gD~~~~~~-~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNH 173 (407)
+.||++.||...... ..+.++++.+.....|+++++|+..-.+ .....|..+.+-... -.+|.|+.-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~----~~~~e~~~ykng~~~--vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHD----TQNAEVEKYKNGTKK--VPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCc----cchhHHHHHhcCCcc--CceeEEEecCCC
Confidence 469999999865432 1233444555444689999999998431 122344433332222 246778776655
No 148
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=41.66 E-value=63 Score=34.58 Aligned_cols=105 Identities=13% Similarity=0.093 Sum_probs=60.5
Q ss_pred eeeccCCCCCcEEEEEEcCCCCC-----CCEEEEeecCCCCce------EEEEEEE-EEEe---c-CCcceeEE-EEEEc
Q 040421 2 HITQGDHEGKGVIVSWVTPDEPG-----SNTVLYWAENSTLKQ------QAHGIVL-TYNY---F-NYTSNCIH-HCTIE 64 (407)
Q Consensus 2 ~l~~g~~~~~~~~v~W~t~~~~~-----~~~v~y~~~~~~~~~------~~~~~~~-~~~~---~-~~~~~~~~-~~~l~ 64 (407)
++.......+++.+.|..-..+. .-.+.|...+. .+. .+-++.. .... . .....-.| ...+.
T Consensus 493 ~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~-qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 493 QFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPF-QNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCc-cccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 44455556789999999875331 23455555542 211 1111110 0000 1 01122344 78899
Q ss_pred CCCCCCEEEEEeCcC----------CceeeEEEEcCCCCCCCCCcEEEEEecCC
Q 040421 65 DLEFDTKYYYEVGVG----------NATRQFSFTTPPGVGPDVPYTFGLIGDLG 108 (407)
Q Consensus 65 gL~p~t~Y~Y~v~~~----------~~s~~~~F~T~p~~~~~~~~~f~~~gD~~ 108 (407)
||+|.|.|.|-|..- ..|++.-++|.|.. +.-++.++..++..
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~-PspPl~~ls~snsS 624 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI-PSPPLDVLSKSNSS 624 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCC-CCCcchhhhccCcc
Confidence 999999999988642 46888999998754 34566666666643
No 149
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=39.52 E-value=53 Score=29.14 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=33.7
Q ss_pred EEEEecCCCCCCchhhHHHhhhCC-CCCce-EEEcCCccccCCCCCCCchhhhHHHHHHhhhhccC--CeEEccCCCccc
Q 040421 101 FGLIGDLGQTYYSNRTLTHYELNP-IKGQT-VLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQ--PWIWTVGNHEID 176 (407)
Q Consensus 101 f~~~gD~~~~~~~~~~l~~~~~~~-~~~d~-vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~--P~~~~~GNHD~~ 176 (407)
+.+.||+|..... +.++-+.. .-||- -|++||.+.. |+ ...+.|.- +--+.++. .+-.+.||||.+
T Consensus 48 VTvCGDIHGQFyD---L~eLFrtgG~vP~tnYiFmGDfVDR-Gy-----ySLEtfT~-l~~LkaryP~~ITLlRGNHEsR 117 (306)
T KOG0373|consen 48 VTVCGDIHGQFYD---LLELFRTGGQVPDTNYIFMGDFVDR-GY-----YSLETFTL-LLLLKARYPAKITLLRGNHESR 117 (306)
T ss_pred eeEeeccchhHHH---HHHHHHhcCCCCCcceEEecccccc-cc-----ccHHHHHH-HHHHhhcCCceeEEeeccchhh
Confidence 4468999865322 22222210 12332 4678999965 32 12233322 22233333 466789999985
No 150
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=37.95 E-value=45 Score=25.61 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.2
Q ss_pred eeEEEEEEcCCCCCCEEEEEeCc
Q 040421 56 NCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 56 ~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
.-+..+.+.++.+|+.|.|+|..
T Consensus 44 ~GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 44 GGVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45778899999999999999976
No 151
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=37.80 E-value=30 Score=32.94 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred EEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCccc
Q 040421 100 TFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEID 176 (407)
Q Consensus 100 ~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 176 (407)
-+.|.||+|...-..-.+-.+--.+.. .--|++||+|.. |+.+-+ -.. ++=.++ +.-..-++...||||..
T Consensus 89 PiTVCGDIHGQf~DLmKLFEVGG~PA~-t~YLFLGDYVDR-GyFSiE-Cvl--YLwsLK-i~yp~tl~lLRGNHECr 159 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMKLFEVGGSPAN-TRYLFLGDYVDR-GYFSIE-CVL--YLWSLK-INYPKTLFLLRGNHECR 159 (517)
T ss_pred CeeEecccchHHHHHHHHHHccCCccc-ceeEeecccccc-ceeeee-hHH--HHHHHh-cCCCCeEEEecCCcchh
Confidence 355789999653221111122223222 235679999965 322111 000 111111 12234578899999984
No 152
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=37.22 E-value=45 Score=26.35 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.4
Q ss_pred eeEEEEEEcCCCCCCEEEEEeCc
Q 040421 56 NCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 56 ~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
+-++++.|.++.+|+.|-|+|..
T Consensus 48 ~gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 48 GDVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CCEEEEEECCCCCCCEEEEEECC
Confidence 45888999999999999999984
No 153
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=36.17 E-value=47 Score=24.43 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=18.7
Q ss_pred eEEEEEEcCCCCCCEEEEEeCcC
Q 040421 57 CIHHCTIEDLEFDTKYYYEVGVG 79 (407)
Q Consensus 57 ~~~~~~l~gL~p~t~Y~Y~v~~~ 79 (407)
=++++.+.++ +|..|.|+|..+
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~~ 61 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDDG 61 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECCC
Confidence 4677889999 999999999853
No 154
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=35.93 E-value=34 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=14.7
Q ss_pred EEEEcCCCCCCEEEEEeCc
Q 040421 60 HCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 60 ~~~l~gL~p~t~Y~Y~v~~ 78 (407)
.++|.+|+|++.|..+|..
T Consensus 68 ~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 68 SVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEES--TTSEEEEEEEE
T ss_pred EEEEeCCCCCCCEEEEEEE
Confidence 3679999999999999876
No 155
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=35.91 E-value=99 Score=27.56 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=52.5
Q ss_pred cCCCCCCCCCCeEEEEecC--cEEEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChh
Q 040421 196 LPYRAPYSTAPFWYSIRRA--SAHIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEP 273 (407)
Q Consensus 196 ~P~~~~~~~~~~~ysf~~g--~v~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~ 273 (407)
-|.+++..+.+.-+++.-+ +++++.|.+....+.++...+-|.+.-+...-+.. .++..-.|.+..+....-+.+.
T Consensus 46 hpdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~dg~G~iR~kEL~ra~~~lgi~~s--~v~~l~~~~f~Dg~~~~Wd~~~ 123 (247)
T KOG3332|consen 46 HPDDESMFFSPTILYLTSGACNVHILCLSNGNADGLGKIREKELHRACAVLGIPLS--NVVVLDTPFFQDGPGEDWDPDA 123 (247)
T ss_pred ccCccccchhhHHHHHhcCCccEEEEEecCCCccccchHHHHHHHHHHHHHCCchh--heEEecCCcCCCCcccccCHHH
Confidence 3444433333333333323 68999998866556665554444443332111111 3555667777666432223455
Q ss_pred HHHHHHHHHHhCCCcEEE
Q 040421 274 MRVLYEPWFVEYKVDVVF 291 (407)
Q Consensus 274 ~~~~l~~l~~~~~vdlvl 291 (407)
+.+.+.+.++.++++.++
T Consensus 124 v~~~l~~~ie~~~~~~ii 141 (247)
T KOG3332|consen 124 VASILLQHIEVLNIDTII 141 (247)
T ss_pred HHHHHHHHHHccCccEEE
Confidence 677888888889998876
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=35.75 E-value=30 Score=31.76 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=37.1
Q ss_pred EEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCc-EEEeccc
Q 040421 217 HIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVD-VVFAAHV 295 (407)
Q Consensus 217 ~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vd-lvl~GH~ 295 (407)
++.-||... +.|+..|+...+-..+ ++-.|.| -.++-+.+.+|+++++.| |||.||+
T Consensus 106 rVLHiDGD~---------~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD 163 (283)
T TIGR02855 106 RVLHIDGDP---------EYLRKCLKLYKKIGVP--VVGIHCK-----------EKEMPEKVLDLIEEVRPDILVITGHD 163 (283)
T ss_pred cEEeecCCH---------HHHHHHHHHHHHhCCc--eEEEEec-----------chhchHHHHHHHHHhCCCEEEEeCch
Confidence 356677532 4677777764322322 3333333 123456788999999999 5899999
Q ss_pred ccc
Q 040421 296 HAY 298 (407)
Q Consensus 296 H~y 298 (407)
-..
T Consensus 164 ~~~ 166 (283)
T TIGR02855 164 AYS 166 (283)
T ss_pred hhh
Confidence 643
No 157
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=34.36 E-value=38 Score=29.75 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=11.6
Q ss_pred CCcEEEeccccccc
Q 040421 286 KVDVVFAAHVHAYE 299 (407)
Q Consensus 286 ~vdlvl~GH~H~y~ 299 (407)
+.+++++||+|...
T Consensus 168 ~~~~iV~GHTh~~~ 181 (207)
T cd07424 168 GVDAVVHGHTPVKR 181 (207)
T ss_pred CCCEEEECCCCCCc
Confidence 45899999999864
No 158
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=33.78 E-value=40 Score=31.17 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=37.0
Q ss_pred EEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCc-EEEecccc
Q 040421 218 IIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVD-VVFAAHVH 296 (407)
Q Consensus 218 fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vd-lvl~GH~H 296 (407)
+.-||... +.|+..|+....-..+ ++-.|.| -.++-+.+.+|+++++.| |||.||+-
T Consensus 108 VLHlDGD~---------~YL~~Cl~~Ykql~i~--a~G~~~~-----------E~eqp~~i~~Ll~~~~PDIlViTGHD~ 165 (287)
T PF05582_consen 108 VLHLDGDE---------EYLNKCLKVYKQLGIP--AVGIHVP-----------EKEQPEKIYRLLEEYRPDILVITGHDG 165 (287)
T ss_pred EEEecCCH---------HHHHHHHHHHHHcCCc--eEEEEec-----------hHHhhHHHHHHHHHcCCCEEEEeCchh
Confidence 56667532 4677777654322222 3333333 133556888999999999 58999998
Q ss_pred cc
Q 040421 297 AY 298 (407)
Q Consensus 297 ~y 298 (407)
..
T Consensus 166 ~~ 167 (287)
T PF05582_consen 166 YL 167 (287)
T ss_pred hh
Confidence 53
No 159
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=32.83 E-value=79 Score=28.72 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=25.1
Q ss_pred eEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCC-eEEccCCCcc
Q 040421 129 TVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQP-WIWTVGNHEI 175 (407)
Q Consensus 129 ~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P-~~~~~GNHD~ 175 (407)
-+|++||.+...+..........+|.+.++.+..--+ .++.+| |++
T Consensus 120 ~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~~l~~l~~~~~i~pG-H~~ 166 (248)
T TIGR03413 120 PALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCA-HEY 166 (248)
T ss_pred CEEEEcCccccCCcCCCCCCCHHHHHHHHHHHHcCCCCeEEECC-CCc
Confidence 4789999987654321112223445555555543222 345677 886
No 160
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.39 E-value=61 Score=24.62 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCCCCCEEEEEeCcC
Q 040421 55 SNCIHHCTIEDLEFDTKYYYEVGVG 79 (407)
Q Consensus 55 ~~~~~~~~l~gL~p~t~Y~Y~v~~~ 79 (407)
..-++++.+.++.+|..|.|+|...
T Consensus 45 ~~gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 45 ENGVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CCCEEEEEeCCccCCcEEEEEEEEe
Confidence 3457788999999999999999753
No 161
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=30.47 E-value=1.3e+02 Score=27.62 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=48.4
Q ss_pred CCCcEEEEEecCCCCCCchhhHHHhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcc
Q 040421 96 DVPYTFGLIGDLGQTYYSNRTLTHYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEI 175 (407)
Q Consensus 96 ~~~~~f~~~gD~~~~~~~~~~l~~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~ 175 (407)
++..+|++.+|.+...+ ...++-+.+. +|+++|+.|=..|--++.-. ....+.-.+.++.+....+--.++.-|=.
T Consensus 174 dg~~~i~faSDvqGp~~-~~~l~~i~e~--~P~v~ii~GPpty~lg~r~~-~~~~E~~irNl~~ii~~~~~~lViDHHll 249 (304)
T COG2248 174 DGKSSIVFASDVQGPIN-DEALEFILEK--RPDVLIIGGPPTYLLGYRVG-PKSLEKGIRNLERIIEETNATLVIDHHLL 249 (304)
T ss_pred cCCeEEEEcccccCCCc-cHHHHHHHhc--CCCEEEecCCchhHhhhhcC-hHHHHHHHHHHHHHHHhCcceEEEeehhh
Confidence 35788999999986543 4566767765 89999999999976553211 11122223445555555555556766655
Q ss_pred c
Q 040421 176 D 176 (407)
Q Consensus 176 ~ 176 (407)
+
T Consensus 250 R 250 (304)
T COG2248 250 R 250 (304)
T ss_pred c
Confidence 3
No 162
>COG2843 PgsA Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]
Probab=29.90 E-value=99 Score=30.04 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=39.7
Q ss_pred HHHHHHhccccCCCCCCeEEEEeeccc-cccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccccccc
Q 040421 234 YKWLEKEFPKVNRSETPWLIVLMHCPL-YNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAYERSE 302 (407)
Q Consensus 234 ~~WL~~~L~~~~~~~~~~~iv~~H~P~-~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y~r~~ 302 (407)
..-++.+++.++ ..+.-+||+.|+-. |.... ...+.++..-+...++++++.+|-|..|-..
T Consensus 210 ~~~~~~~v~~a~-k~adlviv~~HwG~ey~~~p------~~~q~~~a~~lidAGa~iIvGhhpHvlqpiE 272 (372)
T COG2843 210 LERVLAAVLAAK-KGADLVIVQPHWGVEYAYEP------AAGQRALARRLIDAGADIIVGHHPHVLQPIE 272 (372)
T ss_pred hhhhHHHHHhhh-ccCCEEEEeccccccccCCC------cHHHHHHHHHHHhcCcCeEecCCCCcCcceE
Confidence 333444444443 45678999999842 33221 1224455555666899999999999988665
No 163
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=26.08 E-value=63 Score=29.27 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=21.1
Q ss_pred EEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEeccccc
Q 040421 253 IVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHA 297 (407)
Q Consensus 253 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~ 297 (407)
+|+.|||++-...... ............+.++++ .+++-|+..
T Consensus 56 lIItHHP~~f~~~~~~-~~~~~~~~~~~~li~~~I-~vy~~Ht~l 98 (241)
T PF01784_consen 56 LIITHHPLFFKPLKSL-TGDDYKGKIIEKLIKNGI-SVYSAHTNL 98 (241)
T ss_dssp EEEESS-SSSSTSSHC-HCHSHHHHHHHHHHHTT--EEEEESHHH
T ss_pred EEEEcCchhhcCCccc-cccchhhHHHHHHHHCCC-EEEEecccc
Confidence 7788999865332211 112222333334444677 557778764
No 164
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=25.85 E-value=40 Score=34.79 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=28.0
Q ss_pred HhhhCCCCCceEEEcCCccccCCCCCCCchhhhHHHHHHhhhhccCCeEEccCCCcccc
Q 040421 119 HYELNPIKGQTVLFVGDLSYADDYPFHDNNRWDTWGRFIERNAAYQPWIWTVGNHEIDF 177 (407)
Q Consensus 119 ~~~~~~~~~d~vl~~GD~~y~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~~ 177 (407)
.+++. ...|-+=++||+......+ +. .++.|...--+=.-|||||..+
T Consensus 178 ~lIqr-L~VDhLHIvGDIyDRGp~p-------d~---ImD~Lm~~hsvDIQWGNHDIlW 225 (640)
T PF06874_consen 178 ELIQR-LAVDHLHIVGDIYDRGPRP-------DK---IMDRLMNYHSVDIQWGNHDILW 225 (640)
T ss_pred HHHHH-HhhhheeecccccCCCCCh-------hH---HHHHHhcCCCccccccchHHHH
Confidence 34444 2678888899998654321 22 2333333333445799999853
No 165
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.79 E-value=2.1e+02 Score=24.32 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=31.5
Q ss_pred hHHHHHHHHhccccCCCCCCeEEEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecc
Q 040421 231 TPQYKWLEKEFPKVNRSETPWLIVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAH 294 (407)
Q Consensus 231 ~~Q~~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH 294 (407)
.+..+-+.+.|++ .-....|+..|+|.+. +...+.+...+.+.+.|+++.|=
T Consensus 58 ~~~~~~~~~~l~~---~yP~l~ivg~~~g~f~---------~~~~~~i~~~I~~~~pdiv~vgl 109 (172)
T PF03808_consen 58 EEVLEKAAANLRR---RYPGLRIVGYHHGYFD---------EEEEEAIINRINASGPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHH---HCCCeEEEEecCCCCC---------hhhHHHHHHHHHHcCCCEEEEEC
Confidence 3445555556654 1112456666666551 22345777888999999998773
No 166
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=23.98 E-value=3.2e+02 Score=20.98 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCcEEEeccccc
Q 040421 275 RVLYEPWFVEYKVDVVFAAHVHA 297 (407)
Q Consensus 275 ~~~l~~l~~~~~vdlvl~GH~H~ 297 (407)
.+.+....+++++|+++-|+.+.
T Consensus 74 ~~~I~~~~~~~~~dllviG~~~~ 96 (124)
T cd01987 74 AEAIVEFAREHNVTQIVVGKSRR 96 (124)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCC
Confidence 45777888999999888887754
No 167
>PRK10799 metal-binding protein; Provisional
Probab=22.55 E-value=1.3e+02 Score=27.35 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=22.3
Q ss_pred EEEeeccccccCCCCCCCChhHHHHHHHHHHhCCCcEEEecccccc
Q 040421 253 IVLMHCPLYNSYVHHYMEGEPMRVLYEPWFVEYKVDVVFAAHVHAY 298 (407)
Q Consensus 253 iv~~H~P~~~~~~~~~~~~~~~~~~l~~l~~~~~vdlvl~GH~H~y 298 (407)
+++.|||++-....... ..........+.+.++ .+++-|++.-
T Consensus 59 lIitHHP~~~~~~~~~~--~~~~~~~~~~li~~~i-~vy~~Htn~D 101 (247)
T PRK10799 59 AVIVHHGYFWKGESPVI--RGMKRNRLKTLLANDI-NLYGWHLPLD 101 (247)
T ss_pred EEEECCchhccCCCccc--cchHHHHHHHHHHCCC-eEEEEecchh
Confidence 66689998643321111 1122333444555666 4577787753
No 168
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=21.36 E-value=1.2e+02 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=19.4
Q ss_pred eeEEEEEEc-CCCCCC-EEEEEeCcCC
Q 040421 56 NCIHHCTIE-DLEFDT-KYYYEVGVGN 80 (407)
Q Consensus 56 ~~~~~~~l~-gL~p~t-~Y~Y~v~~~~ 80 (407)
.-+++++|. +|.+|+ .|.|+|....
T Consensus 48 ~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 48 DGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp TTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred CCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 346777777 899985 9999998763
No 169
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=20.50 E-value=1.6e+02 Score=26.14 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEeccccCCCChHHHHHHHHhccccCCCCCCeEEE
Q 040421 217 HIIVMSCYSAFGKYTPQYKWLEKEFPKVNRSETPWLIV 254 (407)
Q Consensus 217 ~fi~Lds~~~~~~~~~Q~~WL~~~L~~~~~~~~~~~iv 254 (407)
.++++|. ...+|++|+++.++.. ...+|+++
T Consensus 122 ~LvfiDg-----dD~~Qv~wak~~~~~~--~~~k~ILv 152 (209)
T PRK13738 122 TLYFING-----DDPAQVAWMKRQTPPT--LESKIILV 152 (209)
T ss_pred eEEEEeC-----CCHHHHHHHHHhhhcc--CCceEEEE
Confidence 5666764 5679999999987652 23444444
No 170
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=20.26 E-value=2.5e+02 Score=31.24 Aligned_cols=67 Identities=15% Similarity=0.091 Sum_probs=41.4
Q ss_pred ccCCCCCcEEEEEEcCCCCCCCEEEEee----cCCCCceEEEEEEEEEEecCCcceeEEEEEEcCCCCCCEEEEEeCc
Q 040421 5 QGDHEGKGVIVSWVTPDEPGSNTVLYWA----ENSTLKQQAHGIVLTYNYFNYTSNCIHHCTIEDLEFDTKYYYEVGV 78 (407)
Q Consensus 5 ~g~~~~~~~~v~W~t~~~~~~~~v~y~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gL~p~t~Y~Y~v~~ 78 (407)
.-+...++++|+|.-...-.++...|.. .....|..+. ++.. ...+- +.+++.+|.|-..|.+||..
T Consensus 623 ~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W~~v~-~vp~-----~~~~~-~sa~vv~L~Pwv~YeFRV~A 693 (1051)
T KOG3513|consen 623 VDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKWKAVT-TVPG-----NITGD-ESATVVNLSPWVEYEFRVVA 693 (1051)
T ss_pred EeeeccceEEEEeecCCCCCCCceEEeEEecCCCCCcceEee-ECCC-----cccCc-cceeEEccCCCcceEEEEEE
Confidence 3344568899999987654445555544 3333344333 3211 11222 56888999999999999964
No 171
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=20.02 E-value=1.5e+02 Score=24.56 Aligned_cols=43 Identities=30% Similarity=0.546 Sum_probs=21.6
Q ss_pred eEEEcCCccccCCCCCCC------------chhhhHHHHHHhhhhccCCeEEccC
Q 040421 129 TVLFVGDLSYADDYPFHD------------NNRWDTWGRFIERNAAYQPWIWTVG 171 (407)
Q Consensus 129 ~vl~~GD~~y~~~~~~~~------------~~~~~~~~~~~~~~~~~~P~~~~~G 171 (407)
-+|++||+++........ ...|..+.+.++.+...-|-+.++|
T Consensus 139 ~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~g 193 (194)
T PF00753_consen 139 KVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEESIEALRRLEALDPEVIIPG 193 (194)
T ss_dssp TEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEES
T ss_pred cEEEeeeEeccCCccccccccccccccccCcHHHHHHHHHHHHHHCCCCCEEEeC
Confidence 366777777654432211 1334445555555554445555553
Done!