STRING 9.05 
  AT3G25940 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT3G25940
transcription factor S-II (TFIIS) domain-containing protein; transcription factor S-II (TFIIS) domain-containing protein; FUNCTIONS IN- transcription factor activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN- RNA elongation, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Zinc finger, TFIIS-type (InterPro-IPR001222); Has 677 Blast hits to 677 proteins in 189 species- Archae - 101; Bacte [...] (119 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
emb2742
emb2742 (embryo defective 2742); CTP synthase/ catalytic; embryo defective 2742 (emb2742); FUNC [...] (591 aa)
      0.907
AT4G13720
inosine triphosphate pyrophosphatase, putative / HAM1 family protein; inosine triphosphate pyro [...] (206 aa)
     0.905
AT5G14580
polyribonucleotide nucleotidyltransferase, putative; polyribonucleotide nucleotidyltransferase, [...] (991 aa)
      0.904
NDPK1
NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1 [...] (169 aa)
      0.904
AT5G66005
Expressed protein; Expressed protein; FUNCTIONS IN- nucleoside-triphosphatase activity, transfe [...] (192 aa)
       0.899
AT5G63680
pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (510 aa)
       0.899
NDPK2
NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein b [...] (231 aa)
       0.899
AT5G56350
pyruvate kinase, putative; pyruvate kinase, putative; FUNCTIONS IN- pyruvate kinase activity, p [...] (498 aa)
       0.899
PKP-BETA1
PKP-BETA1 (PLASTIDIC PYRUVATE KINASE BETA SUBUNIT 1); pyruvate kinase; encodes a dominant chlor [...] (579 aa)
       0.899
ATAPY2
ATAPY2 (ARABIDOPSIS THALIANA APYRASE 2); ATPase/ nucleotide diphosphatase; Encodes an enzyme wi [...] (630 aa)
       0.899
 
  Views:                    
   Neighborhood  Fusion  Occurence  Coexpression  Experiments  Database  Textmining      Summary Network

 

Info & Parameters ...
Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
required confidence (score): interactors shown:
or custom value: or custom limit:

additional (white) nodes

 Server load: low (35%)
Permalink