BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040426
(120 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|18404735|ref|NP_566786.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
gi|9279599|dbj|BAB01057.1| unnamed protein product [Arabidopsis thaliana]
gi|21536551|gb|AAM60883.1| putative RNA polymerase I subunit [Arabidopsis thaliana]
gi|88011125|gb|ABD38906.1| At3g25940 [Arabidopsis thaliana]
gi|332643572|gb|AEE77093.1| TFIIB zinc-binding protein [Arabidopsis thaliana]
Length = 119
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
+FLFC CGTML ++S + C CK +N +D+ D+EI+Y V+AE+I+RELGISLF
Sbjct: 8 EFLFCNLCGTMLVLKSTKYAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELGISLF--G 65
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + E +L K+K+ACEKCQ+PE+ Y+TRQTRSADEGQTTYY CP C HR E
Sbjct: 66 EKTQAEAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>gi|297814818|ref|XP_002875292.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
gi|297321130|gb|EFH51551.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 119
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 85/112 (75%), Gaps = 3/112 (2%)
Query: 9 FLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FLFC +CGTML ++S + C CK +N +++ +++I+Y VTAE+I+RELGISLF +
Sbjct: 9 FLFCNWCGTMLVLKSTKYAECPLCKTTRNAKEIINKDIAYTVTAEDIRRELGISLFGEKT 68
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ E +L K+K+ACEKCQ+PE+ Y+TRQTRSADEGQTTYY CP C HR E
Sbjct: 69 QE--EAELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>gi|312281609|dbj|BAJ33670.1| unnamed protein product [Thellungiella halophila]
Length = 119
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 84/113 (74%), Gaps = 5/113 (4%)
Query: 9 FLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF-EQP 66
FLFC CGTML ++S C C+ +N +++ ++I+Y V+AE+I+RELGISLF E+
Sbjct: 9 FLFCNLCGTMLILKSATSAECPLCQTTRNAKEIIGKDIAYTVSAEDIRRELGISLFGEKT 68
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
Q D +L K+K+ACEKCQ+PE+ Y+TRQTRSADEGQTTYY CP CGHR E
Sbjct: 69 QED---AELPKIKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 118
>gi|357465637|ref|XP_003603103.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|357470681|ref|XP_003605625.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355492151|gb|AES73354.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
gi|355506680|gb|AES87822.1| DNA-directed RNA polymerase I subunit RPA12 [Medicago truncatula]
Length = 115
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 6 GRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
GRDFLFC CGTML + S ++ +C CK K N++D+ +EISY ++AE+I+RELGI L E
Sbjct: 5 GRDFLFCHLCGTMLTVPSTDYALCPLCKTKCNIKDIKGKEISYTISAEDIRRELGIDLIE 64
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ + QLSKV + CEKC + E + TRQ RSADEGQTT+Y C RCGH+ QE+
Sbjct: 65 EQK-----VQLSKVNKTCEKCGHGEAAFYTRQMRSADEGQTTFYTCTRCGHQFQEN 115
>gi|449450514|ref|XP_004143007.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Cucumis sativus]
gi|449450516|ref|XP_004143008.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Cucumis sativus]
gi|449450518|ref|XP_004143009.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
3 [Cucumis sativus]
gi|449500372|ref|XP_004161079.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Cucumis sativus]
gi|449500375|ref|XP_004161080.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Cucumis sativus]
gi|449500379|ref|XP_004161081.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
3 [Cucumis sativus]
Length = 116
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 84/121 (69%), Gaps = 6/121 (4%)
Query: 1 MADPLGRDFLFCKFCGTMLRM-ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA G DFLFC CGTML + +V C SCK +++ +++ REISY VTAEEI+++LG
Sbjct: 1 MAYSRGHDFLFCNLCGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIRKQLG 60
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ISL D+ + QL+K +R CEKC N E ++ +RQ RSADEGQTT+Y C +C H+ +E
Sbjct: 61 ISLI-----DEEKMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTRE 115
Query: 120 S 120
+
Sbjct: 116 N 116
>gi|168480799|gb|ACA24493.1| TFIIS domain-containing protein [Cucumis sativus]
Length = 116
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 77/114 (67%), Gaps = 6/114 (5%)
Query: 1 MADPLGRDFLFCKFCGTMLRM-ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA G DFLFC GTML + +V C SCK +++ +++ REISY VTAEEIK++LG
Sbjct: 1 MAYSRGHDFLFCNLGGTMLSFCSTKYVECPSCKSRRSAKEIVGREISYTVTAEEIKKQLG 60
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
ISL D+ QL+K +R CEKC N E ++ +RQ RSADEGQTT+Y C +C
Sbjct: 61 ISLI-----DENNMQLAKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCSKC 109
>gi|224123076|ref|XP_002318989.1| predicted protein [Populus trichocarpa]
gi|222857365|gb|EEE94912.1| predicted protein [Populus trichocarpa]
Length = 117
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 83/121 (68%), Gaps = 5/121 (4%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA G DF+FC CGTM+ + S HV C CKFKK+ +D+++REISY V++E+++R+LG
Sbjct: 1 MAHARGGDFMFCDLCGTMMFLYSKEHVECPLCKFKKSAKDLSEREISYQVSSEDMRRDLG 60
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
IS FE K E + ++ + CEKC + ++ +STRQ RSADEGQTT++ C C + E
Sbjct: 61 ISHFE----GKMEVKDMEINKKCEKCGHTKLKFSTRQMRSADEGQTTFFHCANCSYTFTE 116
Query: 120 S 120
+
Sbjct: 117 N 117
>gi|351723413|ref|NP_001236766.1| uncharacterized protein LOC100527489 [Glycine max]
gi|255632466|gb|ACU16583.1| unknown [Glycine max]
Length = 116
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 5/114 (4%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
DFLFC CGTML + S + C CK ++++QD+ D+EIS+ ++ E+I+RELG+ + E+
Sbjct: 7 DFLFCNLCGTMLTVPSTEYAQCPLCKTRRDIQDICDKEISFTISDEDIRRELGMEIIEE- 65
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ SKV + CEKC + E Y TRQ RSADEGQTT+Y C CGH+ QE+
Sbjct: 66 ---HAVMEYSKVSKKCEKCGHGEATYYTRQMRSADEGQTTFYTCTGCGHQSQEN 116
>gi|302142695|emb|CBI19898.3| unnamed protein product [Vitis vinifera]
Length = 126
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 5/125 (4%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDF+FC CGTML M S + C CK ++ V+D++ REI Y V+AE+I+REL
Sbjct: 1 MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELN 60
Query: 60 ISLFEQPQG---DKGETQLSKVKRACEKCQ-NPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I F + G ++ E Q +K K C++C+ + +YY TRQ RSADEGQT +Y C +CGH
Sbjct: 61 IEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQLRSADEGQTIFYECTKCGH 120
Query: 116 RCQES 120
+ ++
Sbjct: 121 KWSQN 125
>gi|326511037|dbj|BAJ91866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 125
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/124 (46%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L S+ + C C FK+ +D+ +E YAVTAE+I+REL
Sbjct: 1 MAFWQARDFLFCGVCGTLLDFNSHRYASCPLCGFKRKAKDIEGKETRYAVTAEDIRRELK 60
Query: 60 ISLF---EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
I F E Q S +RAC KC + E+ Y T+Q RSADEGQT +Y CP CGH
Sbjct: 61 IKPFVVLESAPNLDIVVQRSLTERACPKCNHHELEYYTKQLRSADEGQTIFYECPECGHA 120
Query: 117 CQES 120
E+
Sbjct: 121 FNEN 124
>gi|356572419|ref|XP_003554366.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA12-like [Glycine max]
Length = 116
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 5/114 (4%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
DFLFC CGT+L + S + C CK +++QDV D+EIS+ + E+I++ELG+ + E+
Sbjct: 7 DFLFCHLCGTLLTVPSTEYAQCPLCKTHRDMQDVCDKEISFTIHDEDIRKELGMEIIEE- 65
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ S V + C KC + E Y TRQ RSADEGQTT+Y C CGH+ QE+
Sbjct: 66 ---HTVMEYSXVCKKCGKCGHGEATYYTRQMRSADEGQTTFYTCTGCGHQSQEN 116
>gi|13324793|gb|AAK18841.1|AC082645_11 putative RNA polymerase I subunit [Oryza sativa Japonica Group]
gi|108710721|gb|ABF98516.1| Transcription factor S-II family protein, expressed [Oryza sativa
Japonica Group]
Length = 126
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L+ +S C C FK+ +D+ +E Y VTAE+I+REL
Sbjct: 1 MAFWQARDFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEDIRRELK 60
Query: 60 ISLFEQPQGDKGETQL----SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + + E + + V + CEKC+NPE+ Y T+Q RSADEGQT +Y C C H
Sbjct: 61 LDPYVILETTLKEEDVIVERATVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRH 120
Query: 116 RCQES 120
E+
Sbjct: 121 EFNEN 125
>gi|8778992|gb|AAF79907.1|AC022472_16 Contains a weak similarity to transcription elongation factor S-II
from Drosophila melanogaster gi|135660 and contains a
transcription factor S-II domain PF|01096 [Arabidopsis
thaliana]
Length = 122
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 26/113 (23%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
D LFC CGTML ++S + C C+ +N +++ D+ ++Y VT E
Sbjct: 34 DILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTE-------------- 79
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+K+ACEKCQ+PE+ Y+TRQTRSADEGQTTYY CP CGHR E
Sbjct: 80 -----------IKKACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>gi|357118102|ref|XP_003560798.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Brachypodium distachyon]
Length = 125
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L +S C C FK+ + + +E YAVT E+I+REL
Sbjct: 1 MAFWQARDFLFCSVCGTLLDFDSVRSASCPLCGFKRKAKAIEGKETRYAVTDEDIRRELK 60
Query: 60 ISLF----EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I F P+ D Q V C KC +P++ Y T+Q R+ADEGQT +Y CP C H
Sbjct: 61 IEPFVTLESAPKMDVI-VQRVVVDETCPKCGHPQLEYHTKQLRAADEGQTVFYECPECRH 119
>gi|168025177|ref|XP_001765111.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683698|gb|EDQ70106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 130
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 7 RDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+D LFC CG++L +S + C C +++VQD +EI Y T ++ R LG+ L Q
Sbjct: 8 QDCLFCNLCGSLLSFDSASFASCLLCHNQRSVQDFQGKEIWYRSTPQDFMRRLGVDLLIQ 67
Query: 66 PQGDKGET-------QLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
P+ + + Q + V C +C+NP + Y T+Q RSADEGQT +Y CP+C H+
Sbjct: 68 PEETQVKAKESDEMQQRAVVNDECPRCKNPSLEYYTKQLRSADEGQTVFYECPKCHHK 125
>gi|297601563|ref|NP_001051059.2| Os03g0711700 [Oryza sativa Japonica Group]
gi|255674831|dbj|BAF12973.2| Os03g0711700 [Oryza sativa Japonica Group]
Length = 154
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 74/153 (48%), Gaps = 33/153 (21%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAE------- 52
MA RDFLFC CGT+L+ +S C C FK+ +D+ +E Y VTAE
Sbjct: 1 MAFWQARDFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKDIEGKETRYTVTAEVRPIALP 60
Query: 53 -EIKRELGISL-----FEQPQGDKGETQL-------------------SKVKRACEKCQN 87
+ LG S+ F PQ + E +L + V + CEKC+N
Sbjct: 61 SSSRETLGSSVSVATDFVSPQDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKCKN 120
Query: 88 PEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
PE+ Y T+Q RSADEGQT +Y C C H E+
Sbjct: 121 PELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 153
>gi|125587678|gb|EAZ28342.1| hypothetical protein OsJ_12319 [Oryza sativa Japonica Group]
gi|218193626|gb|EEC76053.1| hypothetical protein OsI_13248 [Oryza sativa Indica Group]
Length = 156
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 73/155 (47%), Gaps = 35/155 (22%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQ--------------------- 38
MA RDFLFC CGT+L+ +S C C FK+ +
Sbjct: 1 MAFWQARDFLFCGVCGTLLKFDSVRSASCPLCGFKRKAKGRRLPHLSPCKALGCVLLAAD 60
Query: 39 ---------DVADREISYAVTAEEIKRELGISLFEQPQGDKGETQL----SKVKRACEKC 85
D+ +E Y VTAE+I+REL + + + E + + V + CEKC
Sbjct: 61 AFVLFFYGADIEGKETRYTVTAEDIRRELKLDPYVILETTLKEEDVIVERATVNKECEKC 120
Query: 86 QNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+NPE+ Y T+Q RSADEGQT +Y C C H E+
Sbjct: 121 KNPELQYYTKQLRSADEGQTVFYKCANCRHEFNEN 155
>gi|414872417|tpg|DAA50974.1| TPA: hypothetical protein ZEAMMB73_892272 [Zea mays]
Length = 115
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L +S C C FK++ +++ +EI Y +TAE+I+R L
Sbjct: 1 MAFWQTRDFLFCGICGTLLTFDSVRSASCPLCGFKRDAKEIEGKEIQYTMTAEDIRRGL- 59
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ Q + Q +AC KC +P+ + Q RSADEG+TT+Y+C CG
Sbjct: 60 -----KTQTEDVVGQRPVTNKACPKCDHPKAEFYNIQMRSADEGETTFYMCKGCG 109
>gi|242038379|ref|XP_002466584.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
gi|241920438|gb|EER93582.1| hypothetical protein SORBIDRAFT_01g010360 [Sorghum bicolor]
Length = 115
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 7/114 (6%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L +S H C C FK+ +++ ++I Y +TAE+I+R L
Sbjct: 1 MAFWQARDFLFCGVCGTLLTFDSVHSASCPLCGFKRGAKEMEGKQIQYTMTAEDIRRGLK 60
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+L E+ Q K + C+ C +PE Y + Q RSADEG+T +Y C +C
Sbjct: 61 -TLTEEIV-----VQRPKTNKTCKFCDHPEAEYYSLQMRSADEGETIFYTCTKC 108
>gi|359492758|ref|XP_003634465.1| PREDICTED: uncharacterized protein LOC100853901 [Vitis vinifera]
Length = 104
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDF+FC CGTML M S + C CK ++ V+D++ REI Y V+AE+I+REL
Sbjct: 1 MAYSRQRDFMFCNLCGTMLCMSSTKYAECPLCKSRRKVKDISGREIRYTVSAEDIRRELN 60
Query: 60 ISLFEQPQG---DKGETQLSKVKRACEKC-QNPEMYYSTRQT 97
I F + G ++ E Q +K K C++C ++ +YY TRQ
Sbjct: 61 IEPFVKLDGIITEESEAQNAKTKGRCDRCEEDTWLYYYTRQV 102
>gi|302805572|ref|XP_002984537.1| hypothetical protein SELMODRAFT_120289 [Selaginella moellendorffii]
gi|300147925|gb|EFJ14587.1| hypothetical protein SELMODRAFT_120289 [Selaginella moellendorffii]
Length = 115
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 14/111 (12%)
Query: 11 FCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CGTML ES C+ CK ++N + + R I++ + I G+ ++
Sbjct: 9 FCALCGTMLVYESATTASCALCKAQRNAEGMIHRSIAHVLL---INSLFGVLVYIY---- 61
Query: 70 KGETQLSK----VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
TQ S+ V C KC+NP++ Y TRQ RSADEGQT +Y CP+C H+
Sbjct: 62 --STQWSRRRCGVNEDCPKCKNPQLEYYTRQLRSADEGQTVFYECPKCRHK 110
>gi|348685495|gb|EGZ25310.1| hypothetical protein PHYSODRAFT_487107 [Phytophthora sojae]
Length = 125
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 11 FCKFCGTML-RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CGT+L ++N +VCS+C+++ QD+ + VT E K E+ +
Sbjct: 17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTV---VTRSEDKPAPKWLDAEKVMSE 73
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ V+ C KC NPEM Y T Q RSADEGQT +Y C +CGH+
Sbjct: 74 VTGPARATVEEPCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHK 120
>gi|301111244|ref|XP_002904701.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262095031|gb|EEY53083.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 125
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 11 FCKFCGTML-RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CGT+L ++N +VCS+C+++ QD+ + VT E K E+ +
Sbjct: 17 FCPHCGTILDHPDTNSIVCSACEYRCRYQDLPSLTV---VTRSEDKPTPKWLDAEKVMSE 73
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ V+ C KC NPEM Y T Q RSADEGQT +Y C +CGH+
Sbjct: 74 VTGPARATVEETCPKCGNPEMDYYTLQLRSADEGQTVFYECKKCGHK 120
>gi|302764066|ref|XP_002965454.1| hypothetical protein SELMODRAFT_83849 [Selaginella moellendorffii]
gi|300166268|gb|EFJ32874.1| hypothetical protein SELMODRAFT_83849 [Selaginella moellendorffii]
Length = 115
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 14/111 (12%)
Query: 11 FCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CGTML ES C+ CK ++N + + R I++ + I G+ ++
Sbjct: 9 FCALCGTMLVYESATTASCALCKAQRNAEGMIHRSIAHFLL---INSLFGVLVYIY---- 61
Query: 70 KGETQLSK----VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
TQ S+ V C KC+NP++ Y TRQ RSADEGQT +Y CP+C H+
Sbjct: 62 --STQWSRRRCGVNEDCPKCKNPQLEYYTRQLRSADEGQTVFYECPKCRHK 110
>gi|277349595|ref|NP_001162172.1| DNA-directed RNA polymerase I subunit RPA12 [Sus scrofa]
gi|194039982|ref|XP_001929376.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Sus
scrofa]
gi|56805530|dbj|BAD83381.1| ZNRD1 [Sus scrofa]
gi|56805536|dbj|BAD83386.1| transcription-associated zinc ribbon protein [Sus scrofa]
gi|211926938|dbj|BAG82679.1| zinc ribbon domain containing protein 1 [Sus scrofa]
Length = 123
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + V+C+ C F NV+D + + +V +++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGTQDAVICTRCGFSINVRDFEGKVVKTSVVFQKVGTAMPMSMEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|443704238|gb|ELU01383.1| hypothetical protein CAPTEDRAFT_211837 [Capitella teleta]
Length = 115
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 57/113 (50%), Gaps = 10/113 (8%)
Query: 7 RDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIK-RELGISLF 63
+D FC C +L + V C CKF ++D EI + + K + G+S
Sbjct: 5 KDVEFCPECAAILPLPDKREFVTCFCCKFTIPIKDFDGIEIKSKIIFNKRKTKNAGLSSE 64
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+Q G V R C KC N M Y+TRQTRSADEGQT +Y CP+CG +
Sbjct: 65 DQAAG-------PTVDRQCAKCGNDGMTYATRQTRSADEGQTVFYSCPKCGFQ 110
>gi|354490663|ref|XP_003507476.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Cricetulus griseus]
Length = 174
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + VVC C F +V+D + + +V ++ + S+ E
Sbjct: 64 DLDFCPDCGSVLPLPGTQDAVVCPRCGFSIDVRDFEGKAVKTSVVFHKLGAAIPTSVEEG 123
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E+Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 124 P-----ESQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCVNC 166
>gi|426250668|ref|XP_004019056.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Ovis aries]
Length = 123
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGAQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|114051922|ref|NP_001039865.1| DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
gi|358418403|ref|XP_003583930.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Bos taurus]
gi|110287946|sp|Q1RMP0.1|RPA12_BOVIN RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|92097539|gb|AAI14800.1| Zinc ribbon domain containing 1 [Bos taurus]
gi|296474270|tpg|DAA16385.1| TPA: DNA-directed RNA polymerase I subunit RPA12 [Bos taurus]
Length = 123
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|390461348|ref|XP_002746345.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Callithrix
jacchus]
Length = 153
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 43 DLDFCSECGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPVSVEEG 102
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 103 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 145
>gi|355561482|gb|EHH18114.1| Zinc ribbon domain-containing protein 1 [Macaca mulatta]
gi|380789199|gb|AFE66475.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
Length = 126
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|169234608|ref|NP_001108417.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
gi|402866315|ref|XP_003897332.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Papio
anubis]
gi|71153713|sp|Q5TM50.1|RPA12_MACMU RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|55700821|dbj|BAD69776.1| zinc ribbon domain containing, 1 [Macaca mulatta]
gi|355748389|gb|EHH52872.1| Zinc ribbon domain-containing protein 1 [Macaca fascicularis]
gi|383411777|gb|AFH29102.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
gi|384944496|gb|AFI35853.1| DNA-directed RNA polymerase I subunit RPA12 [Macaca mulatta]
Length = 126
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|297661164|ref|XP_002809154.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 isoform 2
[Pongo abelii]
gi|395728671|ref|XP_003775416.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Pongo
abelii]
Length = 126
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|440889570|gb|ELR44661.1| DNA-directed RNA polymerase I subunit RPA12, partial [Bos grunniens
mutus]
Length = 119
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCPDCGSVLPLPGVQDAVSCTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|332245855|ref|XP_003272067.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Nomascus
leucogenys]
Length = 126
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|344257162|gb|EGW13266.1| DNA-directed RNA polymerase I subunit RPA12 [Cricetulus griseus]
Length = 123
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + VVC C F +V+D + + +V ++ + S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGTQDAVVCPRCGFSIDVRDFEGKAVKTSVVFHKLGAAIPTSVEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E+Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ESQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCVNC 115
>gi|403308945|ref|XP_003944898.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F NV+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCSECGSVLPLPGAQDTVTCPRCGFNINVRDFEGKVVKTSVVFHQLGTAMPVSVEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|12963545|ref|NP_075651.1| DNA-directed RNA polymerase I subunit RPA12 [Mus musculus]
gi|71153714|sp|Q791N7.1|RPA12_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|12275852|gb|AAG50161.1|AF230339_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12275854|gb|AAG50162.1|AF230340_1 nuclear RNA polymerase I small specific subunit Rpa12 [Mus
musculus]
gi|12834550|dbj|BAB22954.1| unnamed protein product [Mus musculus]
gi|12838841|dbj|BAB24350.1| unnamed protein product [Mus musculus]
gi|27695655|gb|AAH43016.1| Znrd1 protein [Mus musculus]
gi|148691368|gb|EDL23315.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
gi|148691369|gb|EDL23316.1| zinc ribbon domain containing, 1, isoform CRA_a [Mus musculus]
Length = 123
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V+CS C F +V+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSVDEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q + R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
>gi|47087087|ref|NP_998732.1| DNA-directed RNA polymerase I subunit RPA12 [Rattus norvegicus]
gi|261490677|ref|NP_001159772.1| DNA-directed RNA polymerase I subunit RPA12 [Rattus norvegicus]
gi|71153715|sp|Q6MFY5.1|RPA12_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|46237691|emb|CAE84062.1| zinc ribbon domain containing, 1 [Rattus norvegicus]
gi|149029352|gb|EDL84612.1| zinc ribbon domain containing, 1, isoform CRA_a [Rattus norvegicus]
gi|149029353|gb|EDL84613.1| zinc ribbon domain containing, 1, isoform CRA_a [Rattus norvegicus]
Length = 123
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V+C C F +V+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVDEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E+Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>gi|7657709|ref|NP_055411.1| DNA-directed RNA polymerase I subunit RPA12 [Homo sapiens]
gi|25777707|ref|NP_740753.1| DNA-directed RNA polymerase I subunit RPA12 [Homo sapiens]
gi|115392099|ref|NP_001065276.1| DNA-directed RNA polymerase I subunit RPA12 [Pan troglodytes]
gi|397519265|ref|XP_003829787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Pan
paniscus]
gi|71649339|sp|Q9P1U0.1|RPA12_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|110287947|sp|Q1XHV8.1|RPA12_PANTR RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=Zinc ribbon domain-containing protein 1
gi|7212805|gb|AAF40469.1|AF024617_1 transcription-associated zinc ribbon protein [Homo sapiens]
gi|12275847|gb|AAG50159.1|AF230337_1 nuclear RNA polymerase I small specific subunit Rpa12 [Homo
sapiens]
gi|12275850|gb|AAG50160.1|AF230338_1 nuclear RNA polymerase I small specific subunit Rpa12 [Homo
sapiens]
gi|15012007|gb|AAH10898.1| Zinc ribbon domain containing 1 [Homo sapiens]
gi|29792038|gb|AAH50608.1| Zinc ribbon domain containing 1 [Homo sapiens]
gi|48146335|emb|CAG33390.1| ZNRD1 [Homo sapiens]
gi|86197925|dbj|BAE78600.1| zinc ribbon domain containing, 1 [Homo sapiens]
gi|90960920|dbj|BAE92809.1| zinc ribbon domain containing, 1 [Pan troglodytes]
gi|90960924|dbj|BAE92812.1| zinc ribbon domain containing, 1 [Pan troglodytes]
gi|119623655|gb|EAX03250.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|119623656|gb|EAX03251.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|119623657|gb|EAX03252.1| zinc ribbon domain containing, 1, isoform CRA_a [Homo sapiens]
gi|167773175|gb|ABZ92022.1| zinc ribbon domain containing 1 [synthetic construct]
gi|410214642|gb|JAA04540.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410259660|gb|JAA17796.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410289506|gb|JAA23353.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410328913|gb|JAA33403.1| zinc ribbon domain containing 1 [Pan troglodytes]
gi|410328915|gb|JAA33404.1| zinc ribbon domain containing 1 [Pan troglodytes]
Length = 126
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>gi|426352193|ref|XP_004043601.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Gorilla
gorilla gorilla]
Length = 123
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F NV+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|356523634|ref|XP_003530442.1| PREDICTED: uncharacterized protein LOC100804955 [Glycine max]
Length = 204
Score = 68.2 bits (165), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 12/96 (12%)
Query: 33 FKKNVQDVADREI--------SYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEK 84
F D+A RE+ A+ I+RELG+ + E + + SKV + CEK
Sbjct: 113 FVAKAVDLAVRELITSASLGQVLAIVPYVIERELGMEIIE----EHTVMEYSKVSKKCEK 168
Query: 85 CQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
C + E Y TRQ RSAD+GQTT+Y C CGH+ QE+
Sbjct: 169 CGHGEATYYTRQMRSADKGQTTFYTCTGCGHQSQEN 204
>gi|395832491|ref|XP_003789304.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Otolemur
garnettii]
Length = 180
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + + ++ + +S+ E
Sbjct: 70 DLDFCPDCGSVLPLPGAQDAVTCTRCGFSINVRDFEGKVVKTSFVFHKLGTAMHMSVEEG 129
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 130 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 172
>gi|149754819|ref|XP_001490389.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Equus
caballus]
Length = 168
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV D + + + ++ + +S+ E
Sbjct: 58 DLDFCPDCGSVLPLPGAQDTVTCTRCGFSINVLDFEGKVVKTSFVFHKLGTAMPMSMEEG 117
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 118 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 160
>gi|344306362|ref|XP_003421857.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Loxodonta africana]
Length = 123
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + + ++ L S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGVQDTVTCTRCGFSVNVRDFEGKVVKTSFVFHKLGTALPTSVEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q + R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVIDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|431907041|gb|ELK11159.1| DNA-directed RNA polymerase I subunit RPA12 [Pteropus alecto]
Length = 204
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + V C+ C F NV+D + + + ++ + +S+
Sbjct: 41 DLDFCPDCGSVLPLPGTQDTVTCTRCGFSINVRDFEGKVVKTSFVFHKLGTAMPMSMEGG 100
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 101 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 143
>gi|417407905|gb|JAA50545.1| Putative dna-directed rna polymerase i subunit rpa12-like protein,
partial [Desmodus rotundus]
Length = 129
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + V C+ C F NV+D + + +V ++ +S+ E
Sbjct: 19 DLDFCPDCGSVLPLPGTQDTVPCARCGFSINVRDFEGKVVKTSVVFHKLGTTKPMSMEEG 78
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 79 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 121
>gi|123473529|ref|XP_001319952.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902747|gb|EAY07729.1| hypothetical protein TVAG_118100 [Trichomonas vaginalis G3]
Length = 126
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 16/110 (14%)
Query: 10 LFCKFCGTMLRMES-NHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC FCGT++ + + H+VC CK F +++ + A+EI + G++
Sbjct: 25 LFCTFCGTLVPISNVGHMVCPLCKKAFDGKALQFSEKTVKIVKEADEITSKQGLAR---- 80
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
S +K C +C +Y++T Q RSADEGQT +Y C CG+R
Sbjct: 81 ---------SIIKEKCPECGEEGLYFTTAQIRSADEGQTIFYECIHCGYR 121
>gi|355731001|gb|AES10382.1| zinc ribbon domain containing 1 [Mustela putorius furo]
Length = 119
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 51/108 (47%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F+ V+D R +S V + E
Sbjct: 13 DLDFCPDCGSVLPLPGAQDTVTCVRCAFRVPVRDFEGRAVSSCVVFNKPGTAAPAPAEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C RC
Sbjct: 73 P-----EFQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTRC 115
>gi|330803649|ref|XP_003289816.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
gi|325080075|gb|EGC33646.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
Length = 136
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 11/109 (10%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC C L R S + CS C F KN D+ D++I I + + E +
Sbjct: 31 FCPQCNAFLNYPRSTSQLITCSLCTFSKNKFDIQDKKI--------ITKSSLFNKTEAKK 82
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D E + + + C C + +MY+ T QTRSADEGQT +Y C +C H+
Sbjct: 83 DDSEEDRGAIIDEKCPNCGHGKMYFKTAQTRSADEGQTIFYDCVKCSHK 131
>gi|291395912|ref|XP_002714370.1| PREDICTED: zinc ribbon domain containing 1-like [Oryctolagus
cuniculus]
Length = 243
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + VVC+ C F +V+D + + + ++ + S E
Sbjct: 133 DLDFCPDCGSVLPLPGAQDTVVCTRCGFSIHVRDFEGKVVQTSFVFHKLGAAVPASAEEG 192
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 193 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 235
>gi|405945747|gb|EKC17458.1| DNA-directed RNA polymerase I subunit RPA12 [Crassostrea gigas]
Length = 113
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 20/114 (17%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CGT+L + ++V C C +K +VQ+ +I+ ++ +F +
Sbjct: 11 DLEFCPTCGTILPLPGMDDYVTCKLCGYKIHVQEFDGVKITSSI------------VFNR 58
Query: 66 PQ-----GDKGETQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P+ ++GET + R C KC + +M Y+TRQTRSADEGQT ++ C C
Sbjct: 59 PETLQTNAEEGETSSGPLADRKCSKCGHEKMSYTTRQTRSADEGQTVFFTCLNC 112
>gi|348550748|ref|XP_003461193.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Cavia
porcellus]
Length = 123
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + + C+ C F NV+D+ + + +V ++ +
Sbjct: 13 DLDFCPECGSVLPLPGAQDTLACTRCGFPVNVRDLEGKVVKTSVMFHKLGTAFPV----- 67
Query: 66 PQGDKG-ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+G++G E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 68 -RGEEGHEFQGPVVDRRCSRCGHEGMTYHTRQMRSADEGQTVFYTCTNC 115
>gi|343426304|emb|CBQ69835.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Sporisorium reilianum SRZ2]
Length = 129
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 1 MADPLGRDFLFCKFCGTMLRM--ESNHVVCSSC------KFKKNVQDVADREISYAVTAE 52
+ D +G LFC CG++L + + + + C+ C K N+ V S +A
Sbjct: 4 LPDKIGS-LLFCPNCGSLLDVPGDEDFIKCAPCGAVQNAKVYDNLSIVTRSHPSAFPSAL 62
Query: 53 EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
KR+L + GD + Q + +K C C N EM + T Q RSADEG T +Y CP+
Sbjct: 63 RQKRQLVNT--AAALGDDNKPQEATIKEKCPGCGNDEMNFHTLQLRSADEGTTVFYDCPK 120
Query: 113 CGHR 116
CG++
Sbjct: 121 CGYK 124
>gi|126632631|emb|CAM56335.1| novel protein [Danio rerio]
Length = 118
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + S N + C C FK +VQD + I +V + + S
Sbjct: 7 DVDFCPECGNILPLPSRLNTITCPRCSFKISVQDFTSQVIKSSVMFNPLDQ----SNVAV 62
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ E + + R C +C M Y TRQ RSADEGQT ++ C C
Sbjct: 63 ESAEDAELKGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHC 110
>gi|61806687|ref|NP_001013572.1| DNA-directed RNA polymerase I subunit RPA12 [Danio rerio]
gi|60649694|gb|AAH90545.1| Zgc:110825 [Danio rerio]
Length = 118
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + S N + C C FK +VQD + I +V + + S
Sbjct: 7 DVDFCPECGNILPLPSRLNTITCPRCSFKISVQDFTSQVIKSSVMFNPLDQ----SNVAV 62
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ E + + R C +C M Y TRQ RSADEGQT ++ C C
Sbjct: 63 GSAEDAELKGPVIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHC 110
>gi|358418405|ref|XP_003583931.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Bos taurus]
Length = 129
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 13/114 (11%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQ------DVADREISYAVTAEEIKRELG 59
D FC CG++L + + V C+ C F NV+ D + + +V ++ +
Sbjct: 13 DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRVLTACADFEGKVVKTSVVFNKLGTAMP 72
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+S+ E P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 LSMEEGP-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 121
>gi|388857135|emb|CCF49350.1| probable RPA12-13.7 kD subunit of DNA-directed RNA polymerase I
[Ustilago hordei]
Length = 129
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 11/124 (8%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESNH--VVCSSC------KFKKNVQDVADREISYAVTAE 52
+ D +G LFC CG++L + + + C+ C K N+ V S +A
Sbjct: 4 LPDKIGS-LLFCPNCGSLLDVPGDEDLIRCAPCGAVQNAKVYDNLSIVTRSHPSAFPSAL 62
Query: 53 EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
KR+L + GD + Q + +K C C N EM + T Q RSADEG T +Y CP+
Sbjct: 63 RQKRQLVNT--AAALGDDNKPQEATIKEKCPGCGNDEMNFHTLQLRSADEGTTVFYDCPK 120
Query: 113 CGHR 116
CG++
Sbjct: 121 CGYK 124
>gi|383855900|ref|XP_003703448.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Megachile rotundata]
Length = 125
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + E V C +CK + D ++Y + ++ +Q
Sbjct: 16 FCSDCGSILPLLGEKGDVKCYACKRTWGPEAFGDMYMNYTI---HFNKKDAYESSKQKDD 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D+ E + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 73 DEDEAEGPVVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 117
>gi|328778973|ref|XP_003249576.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like,
partial [Apis mellifera]
Length = 110
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + +V C +CK + D +SY + + + +
Sbjct: 2 FCSDCGSILPLLGDKGNVTCYACKRIWGPEAFGDMSMSYTIHFNKTN----VYALSKQND 57
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+K E + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 58 EKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 102
>gi|391332671|ref|XP_003740755.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Metaseiulus occidentalis]
Length = 127
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 11 FCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + VVC C +++ E V + + L ++ ++ G
Sbjct: 20 FCSVCGSILPLADATKFVVCRLCSTSIPIENFHGMETKSVVVYNDRETALKGAV-QKDDG 78
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G T V R C KC M Y+T QTRSADEGQT +Y CP CGH+ E+
Sbjct: 79 VVGPT----VDRVCVKCGREGMTYATLQTRSADEGQTIFYSCPDCGHQENEN 126
>gi|301789653|ref|XP_002930246.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Ailuropoda melanoleuca]
Length = 123
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F+ D + ++ + ++ + +S+ E
Sbjct: 13 DLDFCPDCGSILPLPGAQDTVTCVRCGFRVXXADFEGKVVNTCIVFNKLGTAVPVSVDEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 115
>gi|380030611|ref|XP_003698937.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Apis
florea]
Length = 123
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + +V C +CK + D +SY + + + +
Sbjct: 15 FCSDCGSILPLLGDKGNVTCYACKRVWGPEAFGDMSMSYTIHFNKTN----VYTLSKQND 70
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+K E + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 71 EKEEAEGPIVERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 115
>gi|299116337|emb|CBN76141.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 9 FLFCKFCGTML-RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+ FC CG++L ES ++C C + + + + E+ VT + + E + Q +
Sbjct: 3 WPFCPSCGSVLDPPESGDILCDHCHLRISYESFGEVEV---VTRSQNRAEPEWLVQIQRK 59
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
G+K E Q + V+ AC KC +P+M + T Q RSADEGQT +Y C
Sbjct: 60 GEKQELQRATVEEACPKCGHPKMEFYTMQLRSADEGQTVFYEC 102
>gi|448627457|ref|ZP_21671923.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|445758765|gb|EMA10061.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
Length = 107
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +++ +VC SC + V DR + T E+ G L E +G
Sbjct: 3 FCDDCGSMMHADADEMVCQSCGAR--VAKDEDRAAEFVSTDEQS----GDELIETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>gi|55377221|ref|YP_135071.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|448640503|ref|ZP_21677406.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|448688895|ref|ZP_21694632.1| DNA-directed RNA-polymerase subunit M [Haloarcula japonica DSM
6131]
gi|55229946|gb|AAV45365.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|445761813|gb|EMA13052.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|445778765|gb|EMA29707.1| DNA-directed RNA-polymerase subunit M [Haloarcula japonica DSM
6131]
Length = 107
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + V DR ++ T E+ EL E +G
Sbjct: 3 FCDDCGSMMHADGDEMVCQSCGAR--VAKDEDRAAAFVSTDEQSDDEL----IETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>gi|241643366|ref|XP_002411049.1| DNA-directed RNA polymerase I, putative [Ixodes scapularis]
gi|215503680|gb|EEC13174.1| DNA-directed RNA polymerase I, putative [Ixodes scapularis]
Length = 121
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Query: 5 LGRDFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
D FCK CG++L + + VVC C + +V++ E + VT + K ++L
Sbjct: 7 FASDTDFCKNCGSVLPLPGLEDFVVCRRCDARIDVRNFDGLETTSKVTFNDRK----VAL 62
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ + V R C +C + M Y+T QTRSADEGQT +Y CP C
Sbjct: 63 KKTSSASSAKPAGPLVDRKCSRCGHEGMTYATLQTRSADEGQTIFYSCPEC 113
>gi|345796976|ref|XP_545465.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Canis lupus
familiaris]
Length = 123
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F V+D + + + ++ + + E+
Sbjct: 13 DLDFCPDCGSVLPLPGAQDAVTCVRCGFGVPVRDFEGKVVRTRIVFNQVGTAVPAPVQEE 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ELQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 115
>gi|448678472|ref|ZP_21689479.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
gi|445772459|gb|EMA23504.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
Length = 107
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + V DR ++ T E+ EL E +G
Sbjct: 3 FCDDCGSMMHADGDEMVCQSCGAR--VAKDEDRAAAFVSTDEQSDDEL----IETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQDCGHRWRE 105
>gi|321470559|gb|EFX81535.1| hypothetical protein DAPPUDRAFT_303407 [Daphnia pulex]
Length = 122
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 8 DFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + + V+C CKF+ ++Q + + + Y + KR I +Q
Sbjct: 10 DPQFCPRCGAILPILGTAGGVMCIVCKFEIDIQVMEEVRVDYNIDFN--KRSDYIEE-QQ 66
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + +T V+R C KC N M Y++ Q RSADEGQT +Y C +C H+
Sbjct: 67 LKSAQSKTDGPLVERKCSKCGNETMSYASLQLRSADEGQTIFYTCTKCQHK 117
>gi|442763267|gb|JAA73792.1| Putative dna-directed rna polymerase i, partial [Ixodes ricinus]
Length = 115
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FCK CG++L + + VVC C K +V++ E + VT + K ++L +
Sbjct: 10 DTDFCKICGSVLPLPGLEDFVVCRRCDAKIDVRNFDGLETTSKVTFNDRK----VALKKT 65
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICP 111
+ V R C +C + M Y+T QTRSADEGQT +Y CP
Sbjct: 66 SSASSAKPAGPLVDRKCSRCGHEGMTYATLQTRSADEGQTIFYSCP 111
>gi|71021591|ref|XP_761026.1| hypothetical protein UM04879.1 [Ustilago maydis 521]
gi|46100946|gb|EAK86179.1| hypothetical protein UM04879.1 [Ustilago maydis 521]
Length = 147
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 1 MADPLGRDFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTA---EEIK 55
+ D +G LFC CG++L + + + + C+ C +N + AD + +++ ++
Sbjct: 4 LPDKIGS-LLFCPNCGSLLDVPGDEDMIKCAPCGAVQNAKGSADLLSTLLISSRSNNQVY 62
Query: 56 RELGISLFEQPQ-------------------GDKGETQLSKVKRACEKCQNPEMYYSTRQ 96
L I P GD + Q + +K C C N EM + T Q
Sbjct: 63 DNLSIVTRSHPSAFPSALRQKRQLVNTAAALGDDKKPQEATIKEKCPGCGNDEMNFHTLQ 122
Query: 97 TRSADEGQTTYYICPRCGHR 116
RSADEG T +Y CP+CG++
Sbjct: 123 LRSADEGTTVFYDCPKCGYK 142
>gi|289596628|ref|YP_003483324.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
gi|289534415|gb|ADD08762.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
Length = 103
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 16/114 (14%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG+++ + VCSSC ++ + D++ S + AE ++E+ +
Sbjct: 1 MFCPKCGSLMHPKDGKWVCSSCGYEMPI----DKDKSQEIVAEAKEKEMIVI-------- 48
Query: 70 KGETQLSKVKR----ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E +L + C KC + ++ +QTR+ADE +T +YICP+CGHR +E
Sbjct: 49 SSEEELKALPYDESVICPKCGHAGAHWMLQQTRAADEPETRFYICPKCGHRWRE 102
>gi|344211338|ref|YP_004795658.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|343782693|gb|AEM56670.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
Length = 107
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + V DR + T E+ G L E +G
Sbjct: 3 FCDDCGSMMHADGDEMVCQSCGAR--VTKDEDRAAEFVSTDEQ----SGDELIETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>gi|410958118|ref|XP_003985667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Felis
catus]
Length = 123
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F +V+D + + ++ + ++ E
Sbjct: 13 DLDFCPDCGSILPLPGVEDTVTCIRCGFSVDVRDFEQKVVRTTFVFHKVGTAVPVAADEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 115
>gi|354611910|ref|ZP_09029862.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353191488|gb|EHB56994.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC SC K+ D + SY +T E + E I Q DK
Sbjct: 3 FCDECGSMMKADDGLWVCGSCANKQ----AKDPDASYVIT--EGQEETEIVDVSDAQ-DK 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L K C C+N + ++ +Q RSADE +T ++IC C HR +E
Sbjct: 56 G---LPKTTVVCPSCENDKAHWYMQQIRSADESETRFFICTECEHRWRE 101
>gi|433639454|ref|YP_007285214.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|448377052|ref|ZP_21559976.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
gi|433291258|gb|AGB17081.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|445656278|gb|ELZ09116.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
Length = 102
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC SC + K D + Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKADDGLWVCGSCDYSKPKGDTDE----YVVTDDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +QTRSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDALCPECGNDRAYWYLQQTRSADESETRFFICSECEHKWRE 99
>gi|242005494|ref|XP_002423600.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
gi|212506748|gb|EEB10862.1| DNA-directed RNA polymerase I subunit, putative [Pediculus humanus
corporis]
Length = 124
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L M +S V C CKF+ + E Y + F Q +
Sbjct: 14 FCWNCGSILPMLDDSAVVKCFMCKFEYGPEAFGAMESHYQIKFRSPYGYKETENFNQRKM 73
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K E + V+R C KC N M Y+T Q RSADEGQT +Y C +CG++
Sbjct: 74 QKNEGPV--VERKCSKCGNDIMSYATLQLRSADEGQTVFYTCTKCGYK 119
>gi|448667264|ref|ZP_21685806.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|445770299|gb|EMA21363.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
Length = 107
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + V DR + T E+ G L E +G
Sbjct: 3 FCDDCGSMMHGDGDEMVCQSCGAR--VAKDEDRAAEFVSTDEQS----GDELIETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>gi|448651475|ref|ZP_21680544.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
gi|445771002|gb|EMA22060.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
Length = 107
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + V DR ++ T E+ EL E +G
Sbjct: 3 FCDDCGSMMHADGDEMVCQSCGAR--VAKDEDRAAAFVSTDEQSDDEL----IETEEGSN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + + +Y+ +QT SADE T ++ C CGHR ++
Sbjct: 57 FEGKPTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCKACGHRWRD 105
>gi|409728138|ref|ZP_11271009.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|448723108|ref|ZP_21705633.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
gi|445788063|gb|EMA38785.1| transcription termination factor Tfs [Halococcus hamelinensis
100A6]
Length = 106
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + VC SC F K + E A+T + + E + + D+
Sbjct: 3 FCDECGSMMKTEGDEWVCGSCGFAK----PRNAETEAAMTTTQGQEETEV-IDVSDVDDR 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G L + C++C N E Y+ +Q RSADE +T +++C C HR +E
Sbjct: 58 G---LPTTEVHCDECGNDEAYWYMQQIRSADESETRFFVCTNCEHRWRED 104
>gi|351694594|gb|EHA97512.1| DNA-directed RNA polymerase I subunit RPA12, partial
[Heterocephalus glaber]
Length = 119
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + + C+ C F + +D + + +V + LG ++
Sbjct: 15 DLDFCPECGSVLPLPGAQDTLACTRCGFPVSARDFEGKVVKTSV----VFHRLGTAM--P 68
Query: 66 PQGDKG-ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
G++G E+Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 69 AWGEEGPESQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 117
>gi|126138250|ref|XP_001385648.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
gi|126092926|gb|ABN67619.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
Length = 123
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTMLRMES--NHVVCSSC-------KFKKNVQDVADREISYAVTAEEIKRELG 59
+FC FCG +L S N + C C KF N++ V + ++ R +
Sbjct: 7 LIFCTFCGNLLDATSSTNEIKCGLCSAGYPKSKFA-NLKVVTTSSEDAFPSVLKMNRSVV 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + D G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 66 KTSLKKDELDDGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTSCGYR 118
>gi|291002057|ref|XP_002683595.1| predicted protein [Naegleria gruberi]
gi|284097224|gb|EFC50851.1| predicted protein [Naegleria gruberi]
Length = 143
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 10 LFCKFCGTMLRMESNHVV----CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+FC CGT+L + V CS C + N+ D D + S+ ++ K ++
Sbjct: 29 MFCHECGTLLSFPTAPTVTTWACSCCGARFNITDYNDVQFSFKMSIPR-KSKIAELEERL 87
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + S + C KC +P+ + T Q RSADEGQT +Y C +CG +
Sbjct: 88 KEEKSSGNEFSIINEPCPKCHHPQRKFFTMQLRSADEGQTVFYECLKCGFK 138
>gi|444705692|gb|ELW47089.1| DNA-directed RNA polymerase I subunit RPA12 [Tupaia chinensis]
Length = 127
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C +V+D ++ + +V ++ +S E
Sbjct: 13 DLDFCPDCGSVLPLPGAQDAVSCTRCGLSIHVRDFEEKVVRTSVVFHKLGTARPLSAEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q + R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVLDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>gi|452978860|gb|EME78623.1| hypothetical protein MYCFIDRAFT_78333 [Pseudocercospora fijiensis
CIRAD86]
Length = 122
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 17/118 (14%)
Query: 9 FLFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEE-------IKREL 58
+FC CGT+L + H+ C C D I VT + ++ L
Sbjct: 7 LVFCTDCGTLLDANTGRKEHIECDVCGTLNK-----DTSIKKVVTTSKPSAFPSTLRTRL 61
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ E +GD + +K+ CEKC N E+ + T+Q RSADEG T +Y CPRC H+
Sbjct: 62 RSDVQEISEGDMQTDAV--IKQPCEKCGNEEVRFYTQQLRSADEGSTVFYTCPRCNHK 117
>gi|255724982|ref|XP_002547420.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135311|gb|EER34865.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 123
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTMLRMESN--HVVCSSC-------KFKKNVQDVADREISYAVTAEEIKRELG 59
+FC FCG +L S+ + C C KF E ++ T + + +
Sbjct: 7 LIFCNFCGNLLDSHSSTSDIKCGVCTASYPKSKFANLKVVTTSSEDAFPSTLKSARSVVK 66
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
SL ++ + D G T +K C KC N EM Y T Q RSADEG T +Y C +CG+R
Sbjct: 67 TSL-KKDELDDGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTKCGYR 118
>gi|300710542|ref|YP_003736356.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|448294864|ref|ZP_21484940.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|299124225|gb|ADJ14564.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
gi|445585643|gb|ELY39936.1| DNA-directed RNA-polymerase subunit M [Halalkalicoccus jeotgali B3]
Length = 107
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + VC SC DRE A + E + G L E +G +
Sbjct: 3 FCPDCGSMMKAEDDRWVCGSC----GETTARDREAESAFVSTE--EQSGDELIETEEGAE 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 57 FEGKPTARDVTCEECGASEAWYTIKQTGSADEPPTRFFKCKECGYRWRE 105
>gi|300175950|emb|CBK21946.2| unnamed protein product [Blastocystis hominis]
Length = 122
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 11 FCKFCGTMLRM-ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FCK CG++L + ES + C C +K + D+++ I + + + + + L +Q +
Sbjct: 20 FCKVCGSILDLPESGTIECGICHWKCQMSDLSNTTIITSSHPKPVPQWVH-ELQQQEKIQ 78
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
G T+ + V C +C+NP+M + T Q RS DEG T +Y C +CG
Sbjct: 79 VGPTR-ALVDEECPRCKNPQMSFYTLQLRSVDEGSTVFYKCLKCG 122
>gi|432328900|ref|YP_007247044.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135609|gb|AGB04878.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 104
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 61/111 (54%), Gaps = 8/111 (7%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
+FC CG+++ + VCS+C ++ +++ +EI V + K + IS E+ +
Sbjct: 1 MMFCPKCGSLMHPKDGKWVCSNCGYEIPIENEEKKEI---VAEAKEKEMIVISSQEELKA 57
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + C KC + ++ +QTR+ADE +T +YICP+CGHR +E
Sbjct: 58 LPYDESV-----MCPKCGHVGAHWMLQQTRAADEPETRFYICPKCGHRWRE 103
>gi|356523632|ref|XP_003530441.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA12-like [Glycine max]
Length = 90
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+ + +RELG+ + E+ + SKV + CEKC + E Y TR RS+D+GQTT+Y C
Sbjct: 25 SRDTRRELGMEIIEEHT----VMEYSKVSKKCEKCGHGEATYYTRXMRSSDKGQTTFYTC 80
Query: 111 PRCGHRCQES 120
CGH+ QE+
Sbjct: 81 TGCGHQSQEN 90
>gi|448523122|ref|XP_003868858.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis Co
90-125]
gi|380353198|emb|CCG25954.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis]
Length = 123
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESN--HVVCSSCKFKKNVQDVADREISYAVTAEEI------KRELGI 60
+FC +CG +L S+ + C+ C A+ ++ + E R +
Sbjct: 7 LIFCTYCGDLLDSHSSTSEIKCTICSATYPKSKFANLKVVTKSSDEAFPSKLKSARSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + D+G T +K C KC N EM Y T Q RSADEG T +Y CP CG+R
Sbjct: 67 TSLSKDELDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPNCGYR 118
>gi|212223973|ref|YP_002307209.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
gi|212008930|gb|ACJ16312.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
Length = 110
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC C +++ + DRE + E K + GI + EQ
Sbjct: 3 FCPECGNLMLPDRKRKVWVCRKCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVEQDLA 62
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L KVK C KC N E Y+ QTR+ DE T +Y C +CGH
Sbjct: 63 -----TLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYKCTKCGH 104
>gi|392596927|gb|EIW86249.1| DNA-directed RNA polymerase I kDa polypeptide [Coniophora puteana
RWD-64-598 SS2]
Length = 125
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 9 FLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + + VVC CK ++ D EI + L Q
Sbjct: 11 LLFCPNCGTLLDTPNGNTPVVVCEQCKHEEPASSFHDIEIVTRSHPDAFPSALRQKRKTQ 70
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ +G+ L KV C C+ PE +Y +Q RSADEG T Y C C H
Sbjct: 71 TKLHEGKV-LPKVAEKCPACEYPEAFYEEKQMRSADEGSTILYTCVSCKH 119
>gi|390333836|ref|XP_003723788.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Strongylocentrotus purpuratus]
Length = 121
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CGT+L S V C C ++ + D ++ Y + +R + P
Sbjct: 13 FCPRCGTILPFPERGSLDVYCKKCSYQTSATDTW-ADVVYHSHRKMNERRTRKTERGHPS 71
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D G V RAC C + ++Y TRQTRSADEGQT +Y CP C
Sbjct: 72 EDLGPV----VDRACSHCGHDGLHYHTRQTRSADEGQTVFYFCPSC 113
>gi|354548101|emb|CCE44837.1| hypothetical protein CPAR2_406400 [Candida parapsilosis]
Length = 123
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESN--HVVCSSCKFKKNVQDVADREISYAVTAEEI------KRELGI 60
+FC +CG +L S+ + C+ C + A+ ++ + + R +
Sbjct: 7 LIFCTYCGDLLDSHSSTSDIKCTMCSATYPKSEFANLKVVTKSSDDAFPSKLKSARSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + D+G T +K C KC N EM Y T Q RSADEG T +Y CP CG+R
Sbjct: 67 TSLSKDELDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPSCGYR 118
>gi|356577277|ref|XP_003556754.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Glycine max]
Length = 76
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
A++I+REL + + E + + SKV + CEKC + E Y TRQ RS D+GQTT+Y C
Sbjct: 11 AKDIRRELEMEIIE----EHTVMEYSKVSKKCEKCGHGEATYYTRQMRSTDKGQTTFYAC 66
Query: 111 PRCGHRCQES 120
CGH QE+
Sbjct: 67 TGCGHPSQEN 76
>gi|290561092|gb|ADD37948.1| DNA-directed RNA polymerase I subunit RPA12 [Lepeophtheirus
salmonis]
Length = 120
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 18/111 (16%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEE-----IKRELGIS-L 62
FC CG++L H+ CS+C K ++ D+EISY++ + + R +G++ L
Sbjct: 12 FCSDCGSILPNVPSKGHLCCSACGSKADISLFLDKEISYSIEFNKREDLAVARTVGVNDL 71
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+P V+R C C + M Y+ Q RSADEGQT ++ C +C
Sbjct: 72 QSEPT----------VERTCSNCGHGLMSYAALQLRSADEGQTVFFTCLKC 112
>gi|67477092|ref|XP_654061.1| DNA-directed RNA polymerase I subunit 13 [Entamoeba histolytica
HM-1:IMSS]
gi|67484028|ref|XP_657234.1| DNA-directed RNA polymerase I subunit 13 [Entamoeba histolytica
HM-1:IMSS]
gi|56471084|gb|EAL48680.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica HM-1:IMSS]
gi|56474445|gb|EAL51812.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449708032|gb|EMD47568.1| DNA-directed RNA polymerase I subunit 13, putative [Entamoeba
histolytica KU27]
Length = 122
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 25/117 (21%)
Query: 11 FCKFCGTMLRM-ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKR---ELGISLFEQP 66
FC CGT L + +S +VC C F ++A++ K E S+FE
Sbjct: 15 FCPRCGTYLILSDSGDIVCDVCHF--------------VISADQFKYNPIETTSSIFEMS 60
Query: 67 QGDKGETQLSK-------VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++++ + V C C N M+Y + Q RS DEGQT YY CP CGH+
Sbjct: 61 NKKRIDSKIKEILPTGAIVYEKCPNCGNETMHYHSAQVRSVDEGQTVYYECPNCGHQ 117
>gi|448301924|ref|ZP_21491913.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
gi|445583132|gb|ELY37466.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
Length = 102
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC F K D + Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKADDGRWECGSCGFTKPKGDADE----YIVTDDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C + Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDALCPECGHDRAYWYMQQIRSADESETRFFICSECEHKWRE 99
>gi|448363717|ref|ZP_21552313.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
gi|445645599|gb|ELY98599.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
Length = 102
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C +C F K D AD+ Y VT ++ E+ +S
Sbjct: 3 FCDECGSMMKAEDGVWECGNCGFTKPKGD-ADQ---YTVTEDQEASEVIVS--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAKCPECGNDRAYWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|66816475|ref|XP_642247.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
gi|60470324|gb|EAL68304.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
Length = 324
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC C L N H+ CS C F K+ D+ +++I VT K L + +
Sbjct: 218 FCPQCNAFLNYPKNFSQHITCSLCTFSKSKADLLNKKI---VT----KSSLFNKSIKNKE 270
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D E + + + C +C + +MY+ T QTRSADEGQT +Y C +C +
Sbjct: 271 EDNEEDRGAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCVKCSFK 319
>gi|294951345|ref|XP_002786934.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901524|gb|EER18730.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVT-AEEIKREL-GISLFEQ 65
+FC +CG+ R + + VCS C K++ S+AV E+K + I E+
Sbjct: 69 MFCGYCGSFYDQRQKGQYSVCSRCGAKRDRFATGPLMESHAVLDYGEMKVWMKNIIDEEE 128
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ K + +++ V C KC+NP M + T+Q RSADEGQT +Y C +CG+R
Sbjct: 129 GKEKKDDKKMALVDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKCGYR 179
>gi|225684280|gb|EEH22564.1| DNA-directed RNA polymerase i 13.7 kda polypeptide
[Paracoccidioides brasiliensis Pb03]
Length = 122
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISL 62
+FC CG +LR E+ ++C C K +D+A + I+ L +SL
Sbjct: 7 LIFCMDCGNLLRESFGDENAILICELCGAKN--KDIASKTITSESKPNAFPSALRTKMSL 64
Query: 63 FEQPQGD--KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D KGE S+ +C +C PEM Y T Q RSADEG T +Y C CGH+
Sbjct: 65 VQTLTADDKKGEAIASE---SCPECGRPEMRYYTLQIRSADEGTTVFYTCEGCGHK 117
>gi|448305187|ref|ZP_21495120.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589465|gb|ELY43697.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
Length = 102
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ C SC + K D +D Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKANDGLWECGSCGYTKPKGDTSD----YTVTDDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDTHCPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|325192573|emb|CCA27002.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 123
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 11 FCKFCGTMLRM-ESNHVVCSSCKFKKNVQD----VADREISYAVTAEEIKRELGISLFEQ 65
FC CG++ + E N++ CS+C + +D V+ + E +++E I +
Sbjct: 15 FCPHCGSIFTLPEINNITCSACAYHCKFEDLPSLVSITQSEQKPVPEWLEKEQKIKNVQG 74
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
P + V+ C KC N EM Y T Q RSADEGQT +Y C +CG +
Sbjct: 75 PA-------RATVEETCPKCGNTEMEYYTLQMRSADEGQTVFYECKKCGTK 118
>gi|443900020|dbj|GAC77347.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Pseudozyma antarctica T-34]
Length = 129
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 11/124 (8%)
Query: 1 MADPLGRDFLFCKFCGTMLRM--ESNHVVCSSC------KFKKNVQDVADREISYAVTAE 52
+ D +G LFC CG++L + + + + C+ C K N+ V S +A
Sbjct: 4 IPDKIGS-LLFCPNCGSLLDVPGDEDFIKCAPCGAVQNAKVYDNLSIVTRSHPSAFPSAL 62
Query: 53 EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
KR+L + G+ + + + +K C C N EM + T Q RSADEG T +Y CP+
Sbjct: 63 RQKRQLVNTAASI--GNDNKPKEATIKEKCPGCGNDEMNFHTLQLRSADEGTTVFYDCPK 120
Query: 113 CGHR 116
CG++
Sbjct: 121 CGYK 124
>gi|145344487|ref|XP_001416763.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576989|gb|ABO95056.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 125
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 11 FCKFCGTMLRMESN--HVVCSSCKFKKNVQDV-ADREISYAVTAEEIKRELGISLFEQPQ 67
FC+ CG LR+ + V C +C + ++D D E A E K G+ P
Sbjct: 7 FCERCGARLRLTTRAPDVRCDACGRARALEDAFGDGERELTAGAREFKFHHGVEA-RHPN 65
Query: 68 GDK-GETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
G + G T+ +RA C KC++ + + T Q RSADEGQT +Y CP+C H
Sbjct: 66 GTRVGATEEVTRERATVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCSH 119
>gi|281346719|gb|EFB22303.1| hypothetical protein PANDA_020626 [Ailuropoda melanoleuca]
Length = 121
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNV----QDVADREISYAVTAEEIKRELGIS 61
D FC CG++L + + V C C F V D + ++ + ++ + +S
Sbjct: 14 DLDFCPDCGSILPLPGAQDTVTCVRCGFATTVLPARADFEGKVVNTCIVFNKLGTAVPVS 73
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ E P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 74 VDEGP-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTSC 120
>gi|340372557|ref|XP_003384810.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Amphimedon queenslandica]
Length = 108
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVT-AEEIKRELGISLF 63
+LFC CG +L +E C++C + VQ++ + SY +E+ LG
Sbjct: 2 YLFCPVCGNLLTVEEGPSCKRFACNTCPY---VQNITQKVASYTFPRLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC +P+ Y+ QTRSADE TT+Y C P C HR +E
Sbjct: 55 ----GAAAWENVDNTDEKCPKCSHPKAYFMQIQTRSADEPMTTFYKCCSPSCSHRWKE 108
>gi|294951337|ref|XP_002786930.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901520|gb|EER18726.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVT-AEEIKREL-GISLFEQ 65
+FC +CG+ R + VCS C K++ S+AV E+K + I E+
Sbjct: 69 MFCGYCGSFYDQRQRGQYSVCSRCGAKRDRFATGPLMESHAVLDYGEMKVWMKNIIDEEE 128
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ K + +++ V C KC+NP M + T+Q RSADEGQT +Y C +CG+R
Sbjct: 129 GKEKKDDKKMALVDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKCGYR 179
>gi|15789670|ref|NP_279494.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|169235384|ref|YP_001688584.1| DNA-directed RNA polymerase subunit M1 [Halobacterium salinarum R1]
gi|10580036|gb|AAG18974.1| DNA-directed RNA-polymerase subunit M [Halobacterium sp. NRC-1]
gi|167726450|emb|CAP13235.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VCSSC K+ D S+ VT + + E+ Q +G
Sbjct: 3 FCDDCGSMMKADDELWVCSSCGHKQP----KDPSASFVVTEGQEETEVVDVSDAQDRG-- 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L C C N E ++ +Q RSADE +T ++IC C HR +E
Sbjct: 57 ----LPTTSVVCPDCDNDEAHWYMQQIRSADESETRFFICTECEHRWRE 101
>gi|356524173|ref|XP_003530706.1| PREDICTED: uncharacterized protein LOC100813507 [Glycine max]
Length = 230
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 47 YAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTT 106
+ + ++I+RELG+ + E+ + SKV + CEKC + E Y TR RSAD+GQTT
Sbjct: 161 FDIIEKDIRRELGMEIIEEHM----VMEYSKVNKKCEKCGHGEATYYTRLMRSADKGQTT 216
Query: 107 YYICPRCGHRCQES 120
+Y C GH QE+
Sbjct: 217 FYTCIGYGHPSQEN 230
>gi|340717534|ref|XP_003397236.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
terrestris]
Length = 123
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + +V C +CK + D +SY + + K G S +
Sbjct: 14 FCSDCGSILPLLGDRGNVKCYACKRVWGPEAFGDMAMSYTIEFNK-KNVYGSSKEKNDAM 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
++ E + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 73 EEAEGPI--VERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 115
>gi|440633594|gb|ELR03513.1| hypothetical protein GMDG_01264 [Geomyces destructans 20631-21]
Length = 120
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 11 FCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG L + + +V C CK Q ++ IS + RE S + D
Sbjct: 9 FCSDCGDTLPISMDQMVKCDCCKMINKNQLLSKTTISTTSNFPSLLREKLTSKTQALTAD 68
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + ++ C C E+ +S QTR ADEG T +Y C CGHR +E
Sbjct: 69 VVQDSKQRTEKLCPDCNKEELTFSQAQTRGADEGSTIFYFCLNCGHRSKE 118
>gi|448344707|ref|ZP_21533611.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
gi|445637348|gb|ELY90499.1| transcription termination factor Tfs [Natrinema altunense JCM
12890]
Length = 102
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E CSSC + + D AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGLWECSSCGYTEPKGD-ADQ---YIVTDDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|350407595|ref|XP_003488137.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Bombus
impatiens]
Length = 123
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + +V C +CK + D +SY + + K G S +
Sbjct: 14 FCSDCGSILPLLGDKGNVKCYACKRVWGPEAFGDMAMSYTIEFNK-KNVYGSSKEKNDVM 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
++ E + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 73 EEAEGPI--VERKCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 115
>gi|356561907|ref|XP_003549218.1| PREDICTED: transcription elongation factor A protein 3-like
[Glycine max]
Length = 196
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
A++I+RELG+ + E + + SKV + CEKC + E Y T Q RSAD+GQTT+Y C
Sbjct: 131 AKDIRRELGMEIIE----EHTVMEYSKVSKKCEKCGHGEATYYTIQMRSADKGQTTFYTC 186
Query: 111 PRCGHRCQES 120
GH QE+
Sbjct: 187 TSYGHPSQEN 196
>gi|356519228|ref|XP_003528275.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Glycine max]
Length = 71
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 53 EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
+I+RELG+ + E+ + SKV + CEKC + E Y TRQ RSAD+G+TT+Y C
Sbjct: 8 DIRRELGMEIIEEHT----VMEYSKVNKKCEKCGHGEAIYYTRQMRSADKGKTTFYTCTG 63
Query: 113 CGHRCQES 120
GH QE+
Sbjct: 64 YGHPSQEN 71
>gi|281203893|gb|EFA78089.1| RNA polymerase I subunit [Polysphondylium pallidum PN500]
Length = 311
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 11 FCKFCGTMLR-ME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC C ++L+ +E + C++CKF+ + + + I+ T LF +PQ
Sbjct: 207 FCPECNSLLQYLEPFGKQIKCTTCKFRADKSILGKKIITSKST-----------LFIKPQ 255
Query: 68 G--DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D+ E + +++ C C + +MY+ T QTRSADEGQT +Y C +C H+
Sbjct: 256 KVEDEEEDRGAEIDELCPSCGHTKMYFKTAQTRSADEGQTIFYECQKCSHK 306
>gi|196000120|ref|XP_002109928.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
gi|190588052|gb|EDV28094.1| hypothetical protein TRIADDRAFT_53335 [Trichoplax adhaerens]
Length = 120
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+++ S+ + C C + ++ E +T I R G+ Q
Sbjct: 11 FCPRCGSIMPSPSSAQTINCIVCNNQISIDSYLGVETKSTITFNAI-RSKGV------QK 63
Query: 69 DKGETQLSK---VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
K +TQ +K ++R CEKC N M Y T+QTRSADEGQT +Y C +CG
Sbjct: 64 IKDDTQHAKGPIIERKCEKCGNNSMTYYTQQTRSADEGQTVFYSCTKCG 112
>gi|324519873|gb|ADY47501.1| DNA-directed RNA polymerase I subunit RPA12 [Ascaris suum]
Length = 112
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 5 LGRDFLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
D FC CGT+L + V C+ C K +++ V ++ + T + +R L
Sbjct: 2 FAADEEFCSTCGTILPLPDTAPTTVTCALCHTKWHIKPVINKLVYR--TEKIYERRLA-- 57
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ +G+ + V++ CEKC + +M Y+ RQTRSADEGQT +Y C C + E+
Sbjct: 58 -----ETKEGDVENPIVEKICEKCGHDKMSYACRQTRSADEGQTVFYTCLNCKYSIVEN 111
>gi|294929692|ref|XP_002779329.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239888392|gb|EER11124.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 408
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVT-AEEIKREL-GISLFEQ 65
+FC +CG+ R + VCS C K++ S+AV E+K + I E+
Sbjct: 293 MFCGYCGSFYDQRQRGQYSVCSRCGAKRDRFVTGPLMESHAVLDYGEMKVWMKNIIDEEE 352
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ K + +++ V C KC+NP M + T+Q RSADEGQT +Y C +CG+R
Sbjct: 353 GKEKKDDKKMALVDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKCGYR 403
>gi|226293906|gb|EEH49326.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides
brasiliensis Pb18]
Length = 130
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI--SL 62
+FC CG +LR E+ ++C C K +D+A + I+ L SL
Sbjct: 7 LIFCMDCGNLLRESFGDENAILICELCGAKN--KDIASKTITSESKPNAFPSALRTKRSL 64
Query: 63 FEQPQGD--KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D KGE S+ +C +C PEM Y T Q RSADEG T +Y C CGH+
Sbjct: 65 VQTLTADDKKGEAIASE---SCPECGRPEMRYYTLQIRSADEGTTVFYTCEECGHK 117
>gi|448318936|ref|ZP_21508446.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
gi|445597464|gb|ELY51539.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
Length = 102
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C SC F K D A+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGTWECGSCGFTKPKGDAAE----YTVTEDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C ++ +E
Sbjct: 51 EETSLPETDANCPECGNDRAYWYMQQIRSADESETRFFICTDCEYKWRE 99
>gi|432883131|ref|XP_004074220.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Oryzias latipes]
gi|432883133|ref|XP_004074221.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Oryzias latipes]
Length = 118
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 6 GRDFLFCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
GRD FC+ CG++L + S+ V C C V + REI V ++ L ++L
Sbjct: 5 GRDPNFCQDCGSVLPLPGLSDTVRCPRCCLCTPVTEFLGREIQSGVIFNPAEQTL-LALE 63
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
++ + E + + R C +C M Y TRQ RSADEGQT ++ C C
Sbjct: 64 DE---ENSELKGPVIDRRCTRCNKEGMIYHTRQMRSADEGQTVFFTCIHC 110
>gi|45198935|ref|NP_985964.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|44984964|gb|AAS53788.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|374109194|gb|AEY98100.1| FAFR417Wp [Ashbya gossypii FDAG1]
Length = 125
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 14/118 (11%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAV------TAEEIKREL 58
+FC +CG +L + +HV C+ C + + ++ ++ A +A KR +
Sbjct: 7 LIFCVYCGNLLDNPSAVAGDHVACALCDAQYDKATFSNLKVVTATADDAFPSALRAKRSV 66
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + + G T ++ C +C + EM Y T Q RSADEG T +Y C CG+R
Sbjct: 67 VKTTLRKGELEDGAT----IREKCPQCGHDEMQYHTLQLRSADEGATVFYTCTSCGYR 120
>gi|225708526|gb|ACO10109.1| DNA-directed RNA polymerase I subunit 12 [Osmerus mordax]
Length = 118
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG +L + + + V C C F V D A ++I+ V I++ I++ ++
Sbjct: 10 FCPECGNVLPLPAMQDTVNCPRCSFSIPVIDFAGQKITSTVVFNPIEQS-SITIEDE--- 65
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ E + + + R C +C M Y TRQ RSADEGQT ++ C C ++ +E
Sbjct: 66 EDSELKGAVIDRRCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHCRYQEKE 116
>gi|257387411|ref|YP_003177184.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
gi|257169718|gb|ACV47477.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
Length = 107
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC SC + VQ ADR + TA + ++ E +G
Sbjct: 3 FCDDCGSMMHTDGDEMVCKSCGSR--VQKDADRAAEFVSTAAQSDDDV----IETEEGAN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 57 FEGKPTAEDVTCADCGHGKAWYTIKQTGSADEPPTRFFKCQDCGNRWRE 105
>gi|167383913|ref|XP_001736733.1| DNA-directed RNA polymerase I subunit RPA12 [Entamoeba dispar
SAW760]
gi|167392221|ref|XP_001740059.1| DNA-directed RNA polymerase I subunit RPA12 [Entamoeba dispar
SAW760]
gi|165895967|gb|EDR23539.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
dispar SAW760]
gi|165900771|gb|EDR27011.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
dispar SAW760]
Length = 122
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 25/117 (21%)
Query: 11 FCKFCGTMLRM-ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKR---ELGISLFEQP 66
FC CG L + +S +VC C F ++A++ K E S+FE
Sbjct: 15 FCPRCGAYLILSDSGDIVCDVCHF--------------VISADQFKYNPIETTSSIFEMS 60
Query: 67 QGDKGETQLSK-------VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++++ + V C C N M+Y + Q RS DEGQT YY CP CGH+
Sbjct: 61 NKKRIDSKIKEILPTGAIVYEKCPNCGNETMHYHSAQVRSVDEGQTVYYECPNCGHQ 117
>gi|68482488|ref|XP_714876.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|68482611|ref|XP_714814.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436409|gb|EAK95772.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436474|gb|EAK95836.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|238883622|gb|EEQ47260.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
albicans WO-1]
Length = 123
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTML--RMESNHVVCSSC-------KFKKNVQDVADREISYAVTAEEIKRELG 59
+FC +CG +L S+ + C+ C KF N++ V + + R +
Sbjct: 7 LIFCNYCGNLLDSHSSSSEIKCTVCSAAYPKSKFA-NLKVVTKSSDDAFPSKLKSARSVV 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + D+G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 66 KTSLKKDELDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTNCGYR 118
>gi|307166898|gb|EFN60802.1| DNA-directed RNA polymerase I subunit RPA12 [Camponotus floridanus]
Length = 117
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 11 FCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CG++L + + VVC +CK + N + D ++++ + + IS E
Sbjct: 7 FCPDCGSILPLLDESKDTVVCFACKREWNAETFGDMKMTHTIHFNS--KNTYISAREADD 64
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
D V+RAC +C+N +M Y+T Q RSADEGQT +Y C +C +
Sbjct: 65 SDDDADG-PIVERACPQCKNDKMSYATLQLRSADEGQTVFYTCTKCKY 111
>gi|358055050|dbj|GAA98819.1| hypothetical protein E5Q_05507 [Mixia osmundae IAM 14324]
Length = 127
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES---NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRE 57
+ D +G +FC CG +L + +HV+C C +++ V S VT +
Sbjct: 5 LPDVIGT-LVFCGPCGNLLNNPAPGESHVLCEICGYREPVSTFH----SIKVTTHTRESA 59
Query: 58 LGISLFEQPQGDKGETQLSKVKRA----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
SL ++ + Q+S K+ C KC + +M +ST Q RSADEG T +Y CPRC
Sbjct: 60 FPSSLRQKRTLVQPTDQVSSSKQLIDERCPKCDSKQMEFSTLQMRSADEGSTVFYTCPRC 119
Query: 114 GHR 116
++
Sbjct: 120 AYK 122
>gi|341581249|ref|YP_004761741.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
gi|340808907|gb|AEK72064.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
Length = 110
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + E K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTKITQKVEHKPDEGIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
T L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 60 --DVTTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 104
>gi|448310737|ref|ZP_21500521.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
gi|445607291|gb|ELY61178.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
Length = 102
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC F K D + ++ + A EI
Sbjct: 3 FCDECGSMMKADDGRWECGSCGFTKPKGDADEYIVTDSQEASEIIES------------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q R+ADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAHCPECGNDRAHWYMQQIRAADESETRFFICTECEHKWRE 99
>gi|429190428|ref|YP_007176106.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|448326340|ref|ZP_21515706.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
gi|429134646|gb|AFZ71657.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|445612555|gb|ELY66276.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
Length = 109
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +H+VC++ + + +RE + T + ++ E +
Sbjct: 3 FCDDCGSMMKADGDHMVCTNENCGGSSERDREREDEFVTTESQTDDDV----IESSEDAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 FEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCTECGHR 104
>gi|414872416|tpg|DAA50973.1| TPA: hypothetical protein ZEAMMB73_892272 [Zea mays]
Length = 94
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
MA RDFLFC CGT+L +S C C FK++ +++ +EI Y +TAE+I+R L
Sbjct: 1 MAFWQTRDFLFCGICGTLLTFDSVRSASCPLCGFKRDAKEIEGKEIQYTMTAEDIRRGL- 59
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQT 97
+ Q + Q +AC KC +P+ + Q
Sbjct: 60 -----KTQTEDVVGQRPVTNKACPKCDHPKAEFYNIQV 92
>gi|435846111|ref|YP_007308361.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
gi|433672379|gb|AGB36571.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
Length = 102
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C SC F K D A+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGTWECGSCGFTKPKGDAAE----YTVTEDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q R+ADE +T ++IC C ++ +E
Sbjct: 51 EETSLPETDATCPECGNDRAYWYMQQIRAADESETRFFICTDCEYKWRE 99
>gi|410928702|ref|XP_003977739.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Takifugu rubripes]
Length = 118
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 5 LGRDFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
D FC CG +L + + V C C F V + ++I V I+R I
Sbjct: 4 FAADLNFCPECGNILPLPGLQDTVRCPRCSFSIPVAEFNGQQIRSTVVLNPIERSAVI-- 61
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D E + + R C +C M Y TRQ RSADEGQT ++ C C
Sbjct: 62 --LEDKDDSELKGPVIDRRCLRCNKEGMVYHTRQMRSADEGQTVFFTCIHC 110
>gi|384499138|gb|EIE89629.1| hypothetical protein RO3G_14340 [Rhizopus delemar RA 99-880]
Length = 126
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 9 FLFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC CG +L M + + ++C+ C + E+ + + L
Sbjct: 11 LTFCPECGNLLDMAGGDDDILLCNQCSCAFRTAGIETTEVITTSSDRSFQSSLKAKRHLV 70
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q + + + +K C C +PEM Y T Q RSADEGQT +Y C +CG++
Sbjct: 71 QQSKEAQQARAIIKEKCPSCGHPEMEYHTMQLRSADEGQTVFYNCKKCGYK 121
>gi|357617341|gb|EHJ70731.1| transcription-associated zinc ribbon protein [Danaus plexippus]
Length = 120
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 1 MAD--PLGRDFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAV---TAEE 53
MAD P FC CG++L + E V C +CK + ++ + +Y + T
Sbjct: 1 MADTGPFTTSTAFCAKCGSILPLLQEFGSVKCYACKASYDPDSYSNIKFNYTIHFNTVSA 60
Query: 54 IKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ + I + P+G V+R C KC N M Y+T Q RSADEGQT +Y C C
Sbjct: 61 LSND-KILHMDNPEG-------PVVERKCPKCGNDRMSYATLQLRSADEGQTVFYTCISC 112
Query: 114 GHR 116
++
Sbjct: 113 KYK 115
>gi|268559674|ref|XP_002637828.1| Hypothetical protein CBG04618 [Caenorhabditis briggsae]
Length = 119
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 5 LGRDFLFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
L D FC +CG +L + + V C C + NV++ D+ +S +++ +
Sbjct: 6 LSYDDDFCGYCGAILELPPQAPSTVTCKVCSTRWNVKERVDQVVS------RVEKIYERT 59
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ + + E+ + V C KC + + YST QTRSADEGQT +Y C +C
Sbjct: 60 VADTDGIENDESADAVVDHICTKCGHTKASYSTMQTRSADEGQTVFYTCLKC 111
>gi|448338833|ref|ZP_21527868.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
gi|445621308|gb|ELY74784.1| transcription termination factor Tfs [Natrinema pallidum DSM 3751]
Length = 102
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C SC + + D AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGLWECGSCGYTEPKGD-ADQ---YIVTDDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|331224793|ref|XP_003325068.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309304058|gb|EFP80649.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 129
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 8 DFLFCKFCGTMLRMESNH-----VVCSSCKF--KKNVQD---VADREISYAVTAEEIKRE 57
+FC+ CG +L + +H + C CK K ++Q+ + + +A + ++
Sbjct: 5 SLIFCESCGNLLSLPEHHSPQNLIRCGHCKQSQKFHLQEELAIVTKSNPHAFPSVLRQKR 64
Query: 58 LGISLFEQPQGDKGETQLSKV-KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ G + + + + +C KCQ+P+M Y T Q RSADEG T +Y CP C H+
Sbjct: 65 TLVQQTANSAGHQNDPAAAPLMDESCPKCQHPQMRYHTLQLRSADEGTTVFYECPNCSHK 124
>gi|448342922|ref|ZP_21531865.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
gi|445624312|gb|ELY77697.1| transcription termination factor Tfs [Natrinema gari JCM 14663]
Length = 102
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C SC + + D AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGLWKCGSCGYTEPKGD-ADQ---YIVTDDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|197129923|gb|ACH46421.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L E + C++C + +NV + V R+ +E+ LG
Sbjct: 2 LLFCPACGNVLVAEEGPRCHRFACTTCPYVRNVTRKVTSRKYP---RLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C P+CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRWRD 108
>gi|448350560|ref|ZP_21539372.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
gi|445636129|gb|ELY89292.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
Length = 102
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C +C F K D AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGVWECGNCGFTKPKGD-ADQ---YTVTEDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAKCPECGNDRAYWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|328769247|gb|EGF79291.1| hypothetical protein BATDEDRAFT_89614 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 9 FLFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEE----IKRELGIS 61
+FCK CG++L ++ +VVC C V D + E+ VT + + I
Sbjct: 13 LVFCKECGSLLDPPNDIEDYVVCHCCA---TVVDAKEFELRPVVTVSKQATFPDKPKPIV 69
Query: 62 LFEQPQGDKGETQL---SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D+ L + ++ C KC PEM + T Q RSADEGQT +Y C CG++
Sbjct: 70 DPSDDNNDRTNAHLRDGATIQEKCPKCDAPEMVFHTAQLRSADEGQTVFYSCVVCGYK 127
>gi|318056068|ref|NP_001188185.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
gi|308323879|gb|ADO29075.1| DNA-directed RNA polymerase I subunit rpa12 [Ictalurus punctatus]
Length = 133
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 8 DFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + H + C C F VQ+ + I +V +++
Sbjct: 7 DINFCPECGNILPIPELHDFITCPRCAFSIPVQEFSGYMIKSSVVFNSLEKSSSAV---- 62
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + E + + R C +C M Y TRQ RSADEGQT ++ C C ++ +E
Sbjct: 63 -ESEDSELKGPIIDRKCSRCNKEGMVYHTRQMRSADEGQTVFFTCIHCRYQEKE 115
>gi|159463406|ref|XP_001689933.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
gi|158283921|gb|EDP09671.1| DNA-directed RNA polymerase I subunit [Chlamydomonas reinhardtii]
Length = 124
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 7 RDFLFCKFCGTMLRMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+D++FC G +L ++ V C +++++ +++ ++ E+ +R +
Sbjct: 5 KDWMFCPTSGYLLHLDPKRQVAACPVSGYERSLAELSSVKVVLRTDMEDYRRRFALEPLV 64
Query: 65 QPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D E L KRA C KC + ++ Y T Q RSADEGQT +Y C CGH+
Sbjct: 65 KSVED--EELLKGRKRATVDEPCPKCNHRQLEYYTMQLRSADEGQTVFYECKNCGHK 119
>gi|365981931|ref|XP_003667799.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
gi|343766565|emb|CCD22556.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
Length = 126
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 21/122 (17%)
Query: 9 FLFCKFCGTML-----RMESNHVVCSSCKFK---------KNVQDVADREISYAVTAEEI 54
+FC CG +L ++S+ + CS C+ K K V AD A+ +++
Sbjct: 7 LIFCLDCGNLLDNPSSAVDSSEIECSQCQAKYPKSKFSDLKVVTSTADDAFPSALRSKKS 66
Query: 55 KRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ + E G + +K C KC N EM+Y T Q RSADEG T +Y C CG
Sbjct: 67 VVKTSLKKNELEDG-------AVIKEKCPKCGNDEMHYHTLQLRSADEGATVFYTCTSCG 119
Query: 115 HR 116
++
Sbjct: 120 YK 121
>gi|448397335|ref|ZP_21569456.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
gi|445672972|gb|ELZ25540.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
Length = 102
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ ++ C SC F K D AD+ Y +T ++ E+ S
Sbjct: 3 FCDECGSMMKADNGIWECGSCGFTKPKGD-ADQ---YTLTEDQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAICPECGNDRAYWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|448298319|ref|ZP_21488348.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
gi|445591515|gb|ELY45716.1| transcription termination factor Tfs [Natronorubrum tibetense GA33]
Length = 109
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +H+VC++ + + DRE + T + E+ E
Sbjct: 3 FCDDCGSMMKADGDHMVCTNDDCGTSSERDRDRESEFVSTESQTDDEV----IESDANAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C+ C N E +Y+ +QT SADE T ++ C CG R
Sbjct: 59 FEGKPKATDVVCDDCGNQEAWYTLKQTASADEPPTRFFKCTECGKR 104
>gi|158291066|ref|XP_312581.4| AGAP002375-PA [Anopheles gambiae str. PEST]
gi|157018196|gb|EAA07851.5| AGAP002375-PA [Anopheles gambiae str. PEST]
Length = 114
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 11/118 (9%)
Query: 8 DFLFCKFCGTMLR--MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L SN V C C+ + + E Y + + +
Sbjct: 2 DPGFCPDCGSILPPLKNSNRVSCYGCQSEFDAAAFGTMETEYTIHFNSYANK------KS 55
Query: 66 PQGDKGETQLSK---VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
Q D+ E + ++ V R C KC N +M Y+T Q RSADEGQT ++ C +C ++ E+
Sbjct: 56 DQADRAEGEEAEGPIVNRQCPKCGNDQMSYATLQLRSADEGQTVFFTCTKCKYKMSEN 113
>gi|156372965|ref|XP_001629305.1| predicted protein [Nematostella vectensis]
gi|156216302|gb|EDO37242.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 11/107 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + V C C F+++ + + EI K+ + ++
Sbjct: 8 FCPVCGSILPLPGLEDVVSCKLCDFQRDTAEFEEVEIHS-------KKRFNVDKEKRTTD 60
Query: 69 DK--GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D+ +T V R C C + M Y TRQTRSADEGQT +YIC C
Sbjct: 61 DRKNDDTSGPMVDRKCPNCGHEGMTYMTRQTRSADEGQTVFYICTDC 107
>gi|322369843|ref|ZP_08044405.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
gi|320550179|gb|EFW91831.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
Length = 103
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ VC SC + D ++ I+ A EI G
Sbjct: 3 FCDECGSMMKANDGFWVCGSCGHETPRGDASEYVITEDQEASEIIESGG----------- 51
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L + C C N + Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 52 GSNGLPTTEVQCPNCDNDQAYWYLQQIRSADESETRFFVCTECEHKWRE 100
>gi|209881247|ref|XP_002142062.1| DNA-directed RNA polymerase III subunit RPC10 [Cryptosporidium
muris RN66]
gi|209557668|gb|EEA07713.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Cryptosporidium muris RN66]
Length = 106
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 11 FCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L + E + C +C F +Q + + + EL E+
Sbjct: 4 FCPHCHNILLIREIDERTALFCQTCPF---IQKLNKQIVKVT--------ELTPKKPEEA 52
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
QGD E +KV C KC N E Y+ Q RSADE T++Y C +C H+ +E+
Sbjct: 53 QGDMNEIASAKVMAVCPKCSNTEAYFFQLQIRSADEPMTSFYTCVKCEHKWKEN 106
>gi|448730238|ref|ZP_21712546.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
gi|445793406|gb|EMA43978.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
Length = 106
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC+ C + V DR ++ T + ++ I E D
Sbjct: 3 FCDECGSMMHADGDEMVCADCG--ERVPKDGDRAAAFVSTESQTTDDV-IETSE----DA 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + AC++C N +Y+ +QT SADE T ++ C CGHR
Sbjct: 56 ADEGKPTAEVACDECGNDRAWYTIKQTGSADEPPTRFFKCTECGHR 101
>gi|149240061|ref|XP_001525906.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450029|gb|EDK44285.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 123
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTML--RMESNHVVCSSC--KFKK----NVQDVADREISYAVTAEEIKRELGI 60
+FC +CG +L S+ + C+ C + K N++ V + ++ R +
Sbjct: 7 LIFCSYCGDLLDSHSASSDIQCNICLASYPKSQFANLKVVTKSADDAFPSKLKLARSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + D+G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 67 TSLKKDELDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTECGYR 118
>gi|197128230|gb|ACH44728.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
gi|197128231|gb|ACH44729.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L E + C++C + +NV + V R+ +E+ LG
Sbjct: 2 LLFCPACGNVLVAEEGPRCHRFACTTCPYVRNVTRKVTSRKYP---RLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C P+CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRWRD 108
>gi|336254115|ref|YP_004597222.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
gi|335338104|gb|AEH37343.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
Length = 107
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC+SC + DRE A E + + + + +
Sbjct: 3 FCDDCGSMMKADGDRMVCTSC----GAETERDREQEDAFVTTESQTDDDVIESSEDANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDV--VCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|55377133|ref|YP_134983.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
gi|55229858|gb|AAV45277.1| DNA-directed RNA-polymerase subunit M [Haloarcula marismortui ATCC
43049]
Length = 108
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC SC ++K A++E+ AVT + + + E D
Sbjct: 3 FCDECGSMMKTDDERWVCGSCGYEKARNAEAEQEM--AVTTQGQEESEVVDTSEVDAEDM 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T ++ C +C N +Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 61 GPTTGAR----CPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 105
>gi|328847366|gb|EGF96895.1| hypothetical protein MELLADRAFT_54373 [Melampsora larici-populina
98AG31]
Length = 145
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 4 PLGRDFLFCKFCGTM---LRMESNHVVCSSCKFKKNVQD---VADREISYAVTAE-EIKR 56
P D+L C CG M R + + S+ K+ +Q+ + R S A + KR
Sbjct: 21 PGSEDYLSCDQCGKMELSNRQSKSLIHISTYLSKQKIQEGLEIITRSQSNAFPSSLRQKR 80
Query: 57 ELGIS-LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L S L D+G+ + C KC NP+M Y T Q RSADEG T +Y CP+CGH
Sbjct: 81 ALVQSHLTTNEDQDQGKAA-PLMDEICPKCSNPQMKYHTLQLRSADEGTTVFYECPKCGH 139
Query: 116 R 116
+
Sbjct: 140 K 140
>gi|294889433|ref|XP_002772810.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
gi|239877360|gb|EER04626.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
Length = 838
Score = 57.8 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVTAE-EIKREL-GISLFEQ 65
+FC +CG+ R + + VCS C K++ S+AV E+K + I E+
Sbjct: 69 MFCGYCGSFYDQRQKGQYSVCSRCGAKRDRFATGPLMESHAVLDYGEMKVWMKNIIDEEE 128
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ K + +++ V C KC+NP M + T+Q RSADEGQT +Y C + G
Sbjct: 129 GKEKKDDKKMALVDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKFG 177
>gi|348542186|ref|XP_003458567.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Oreochromis niloticus]
Length = 117
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG +L + + V C C F+ V + + +EI AV ++ + +S E+
Sbjct: 10 FCPECGNVLPLPGIPDVVCCPGCSFRIPVSEFSGQEIRSAVVFNPVE-QAPVSQDEEDSE 68
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
KG + R C C M Y TRQ RSADEGQT ++ C C
Sbjct: 69 MKGPV----IDRRCSHCNKEGMIYHTRQMRSADEGQTVFFTCIHC 109
>gi|448426140|ref|ZP_21583086.1| transcription termination factor Tfs [Halorubrum terrestre JCM
10247]
gi|448452560|ref|ZP_21593422.1| transcription termination factor Tfs [Halorubrum litoreum JCM
13561]
gi|448508060|ref|ZP_21615294.1| transcription termination factor Tfs [Halorubrum distributum JCM
9100]
gi|448518474|ref|ZP_21617551.1| transcription termination factor Tfs [Halorubrum distributum JCM
10118]
gi|445679631|gb|ELZ32091.1| transcription termination factor Tfs [Halorubrum terrestre JCM
10247]
gi|445697637|gb|ELZ49697.1| transcription termination factor Tfs [Halorubrum distributum JCM
9100]
gi|445705055|gb|ELZ56959.1| transcription termination factor Tfs [Halorubrum distributum JCM
10118]
gi|445808759|gb|EMA58817.1| transcription termination factor Tfs [Halorubrum litoreum JCM
13561]
Length = 109
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + A+R+ A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGGTAERDEGLAAEFESTTEQTGEEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTATDVVCDECDHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|170574991|ref|XP_001893050.1| hypothetical protein [Brugia malayi]
gi|158601125|gb|EDP38119.1| conserved hypothetical protein [Brugia malayi]
Length = 109
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 64/113 (56%), Gaps = 12/113 (10%)
Query: 11 FCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CGT+L + + + CS C+ + +++ + ++ + +E++ + ++
Sbjct: 5 FCSECGTVLPIPATAPVTITCSYCRTQWHIKPIRNKLV---YRSEKVYQNRVLN------ 55
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
++G + V + C+KC + +M Y+ RQTRSADEGQT +Y+C +C + E+
Sbjct: 56 ANEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKCNYNMVEN 108
>gi|452821122|gb|EME28156.1| DNA-directed RNA polymerase III subunit C11 [Galdieria sulphuraria]
Length = 107
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 10 LFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC++C +L +E S +C +C F V+ +R++ + + ++ LG
Sbjct: 2 LFCRWCHNLLMLERQQDSFRFICRTCPFYYQVEGKMERKV-FGLQKKQEADILG------ 54
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GDK + C +C + + Y+ QTRSADE +T+Y C CGH+ +E+
Sbjct: 55 --GDKQWELADQTDTLCPRCSHGKAYFFQMQTRSADEPMSTFYRCVHCGHQWKEN 107
>gi|336364359|gb|EGN92719.1| hypothetical protein SERLA73DRAFT_127310 [Serpula lacrymans var.
lacrymans S7.3]
gi|336378259|gb|EGO19417.1| hypothetical protein SERLADRAFT_374144 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 57.8 bits (138), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 9 FLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + + V+C C ++ + EI+ E L Q
Sbjct: 13 LLFCPDCGTLLSLPKDSDQTVICEQCSHEEPASSYENTEITTRSHPEAFPSALRQKRKTQ 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ +G+ L KV C C + E YY +Q RSADEG T Y C C H
Sbjct: 73 TKIHQGKV-LPKVSEKCPACGHLEAYYEEKQMRSADEGSTILYTCVSCKH 121
>gi|334323673|ref|XP_003340420.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Monodelphis domestica]
Length = 117
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 12 CKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
C CG++L + + V C C F +V++ + + +V +LG + F + +
Sbjct: 17 CPECGSILPLPGTLDIVTCPRCGFSIDVREFEGKVVETSVEF----HKLGTTAFLVSEEE 72
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E Q + R C C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 GPEFQGPVIDRRCSNCGHEGMAYHTRQMRSADEGQTVFYTCTNC 116
>gi|448484917|ref|ZP_21606318.1| transcription termination factor Tfs [Halorubrum arcis JCM 13916]
gi|445819350|gb|EMA69194.1| transcription termination factor Tfs [Halorubrum arcis JCM 13916]
Length = 109
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + A+R+ A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGGTAERDEGLAAEFESTTEQTGEEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTATDIVCDECDHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|145546007|ref|XP_001458687.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426508|emb|CAK91290.1| unnamed protein product [Paramecium tetraurelia]
Length = 118
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC C ML + + + C+ C +K ++ D + I IK E L QPQ
Sbjct: 9 FCPQCHFMLELPEVMDIIECNRCGYKCSITDYQPKYI-----ISTIKMEPKSWLSNQPQE 63
Query: 69 DKGETQLSK--VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
K Q + +++ C KC + E Y+ST Q RSADEG T +Y C +C R Q
Sbjct: 64 SKLSDQSHRAVIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYECVKCQFRYQ 115
>gi|318086250|ref|NP_001188119.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
gi|308322041|gb|ADO28158.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus furcatus]
gi|308322895|gb|ADO28585.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
Length = 108
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLVVEEGQRCYRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C P+CGHR ++
Sbjct: 55 ----GSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSPQCGHRWRD 108
>gi|427786081|gb|JAA58492.1| Putative dna-directed rna polymerase i [Rhipicephalus pulchellus]
Length = 122
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FCK CGT+L + ++V C C + +V++ E V + K L +
Sbjct: 14 FCKRCGTVLPLPGHEDYVECKKCGARIDVRNFHGLETFSRVVFNDRKAALKKAAPVSAAK 73
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
G V R C +C + M Y+T QTRSADEGQT +Y CP C
Sbjct: 74 PAGPL----VDRKCSRCGHEGMTYATLQTRSADEGQTIFYSCPEC 114
>gi|257053431|ref|YP_003131264.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
gi|256692194|gb|ACV12531.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
Length = 107
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKK-NVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC+ CG+M+ + +VC SC +++ QD+AD +S + + L E +
Sbjct: 3 FCEECGSMMHADGEEMVCQSCGYREAKDQDLADDFVS-------TQDQTDDDLIETEEDA 55
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + +Y+ +QT SADE T ++ C CGHR
Sbjct: 56 NFEGKPTADDVVCDECGHGVAWYTIKQTGSADEPPTRFFKCKECGHR 102
>gi|395536828|ref|XP_003770413.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Sarcophilus
harrisii]
Length = 132
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 12 CKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
C CG++L + + V C C F +V++ + + ++ + +LG + + +
Sbjct: 25 CTECGSILPLPGALDTVTCPRCGFSIDVREFEGKVVETSI----VFHKLGTTALIVSEEE 80
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E Q + R C C + M Y TRQ RSADEGQT +Y C C
Sbjct: 81 GPELQGPVIDRRCSNCGHEGMAYHTRQMRSADEGQTVFYTCTNC 124
>gi|146422240|ref|XP_001487061.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
gi|146388182|gb|EDK36340.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEE-------IKRELG 59
+FC CG +L ++ + C C A+ ++ +AE+ +KR +
Sbjct: 7 LIFCTSCGNLLDAAGSNTQIECKVCTASYPASGFANLKV-VTQSAEDAFPSQLKLKRSVV 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + D+G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 66 KTSLNKDEMDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTGCGYR 118
>gi|384253550|gb|EIE27025.1| hypothetical protein COCSUDRAFT_83584 [Coccomyxa subellipsoidea
C-169]
Length = 120
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 7 RDFLFCKFCGTMLRMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF- 63
++++FC G++L +++ V C +++ ++D+ ++ +R +
Sbjct: 5 KEWMFCPLTGSLLTLDATSGVAKCPISGWQRKLEDLDGSVTVSKSNIQDYRRRFNLEPLV 64
Query: 64 -EQPQGD-----KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
E+ + D +G T+ + V C KC N M Y TRQ RSADEGQT +Y CP CG
Sbjct: 65 KEKKKEDEFLEQQGRTR-ATVDDDCPKCGNHGMEYYTRQLRSADEGQTIFYECPNCG 120
>gi|335433990|ref|ZP_08558799.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|335438373|ref|ZP_08561120.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334892322|gb|EGM30558.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898216|gb|EGM36331.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 106
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E VC SC +K + AD E T + + E+ + L E + +
Sbjct: 3 FCDECGSMMKTEGEMWVCGSCGAEKPRE--ADGESGMVTTEGQQEGEI-VDLSESEEDAR 59
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T+ C +C N ++ +Q RSADE +T ++ C CGH+ +E
Sbjct: 60 PTTEAH-----CPECGNDRAFWEMKQIRSADESETRFFTCTECGHKWRE 103
>gi|213408913|ref|XP_002175227.1| DNA-directed RNA polymerase I subunit RPA12 [Schizosaccharomyces
japonicus yFS275]
gi|212003274|gb|EEB08934.1| DNA-directed RNA polymerase I subunit RPA12 [Schizosaccharomyces
japonicus yFS275]
Length = 120
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 8 DFLFCKFCGTMLR-MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS-LFEQ 65
+FC CG +L + +C C+ + A + A L + Q
Sbjct: 6 SLIFCSACGNLLESTTAQWTICDQCQSSYPSEKFAHLTLETRSGANAFPSALRLKHSIVQ 65
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+G K E + + ++ C KC N EM + T Q RSADEG T +Y CPRC ++
Sbjct: 66 TEGKKPE-EAAVIQEKCPKCGNDEMTFHTLQLRSADEGSTVFYECPRCAYK 115
>gi|312088800|ref|XP_003146000.1| hypothetical protein LOAG_10428 [Loa loa]
Length = 109
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 63/113 (55%), Gaps = 12/113 (10%)
Query: 11 FCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CGT+L + + + CS C+ + +++ + ++ + +E+I ++ +
Sbjct: 5 FCSECGTVLPLPATAPVTITCSYCRTQWHIKPIRNKLV---YRSEKIYQKRMMD------ 55
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + V + C+KC + +M Y+ RQTRSADEGQT +Y+C +C + E+
Sbjct: 56 AKEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKCNYNMVEN 108
>gi|294948622|ref|XP_002785812.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
gi|239899920|gb|EER17608.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
Length = 899
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAV-TAEEIKREL-GISLFEQ 65
+FC +CG+ R + VCS C K++ S+AV E+K + I E+
Sbjct: 69 MFCGYCGSFYDQRQRGQYSVCSRCGAKRDRFATGPLMESHAVLDYGEMKVWMKNIIDEEE 128
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ K + +++ V C KC+NP M + T+Q RSADEGQT +Y C + G
Sbjct: 129 GKEKKDDKKMALVDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKFG 177
>gi|448357864|ref|ZP_21546559.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
gi|445648172|gb|ELZ01134.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
Length = 107
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ E + +VC++C DRE + T + E+ E +
Sbjct: 3 FCDDCGSMMMAEDDRMVCTNCGAASERD--RDREDEFITTESQTDDEV----IESDENAN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 57 FEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|320580300|gb|EFW94523.1| RNA polymerase I subunit A12.2 [Ogataea parapolymorpha DL-1]
Length = 123
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEI------KRELGI 60
+FC+ CGT+L +N + C CK + A+ ++ + K+ L
Sbjct: 7 LIFCQDCGTLLDSFANRPSIQCQMCKRTYESKHFANLKVVTHTAPDAFPSSLKSKKSLVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + ++G T +K C +C N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 67 TSLKTSEVEEGAT----IKEKCPQCGNDEMQYHTLQLRSADEGATVFYTCTSCGYR 118
>gi|448727240|ref|ZP_21709607.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
gi|445791665|gb|EMA42301.1| DNA-directed RNA polymerase subunit M1 [Halococcus morrhuae DSM
1307]
Length = 106
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC +C + K D + ++ EE + + +S E ++
Sbjct: 3 FCDECGSMMKTDDGVWVCDNCGYTKPRDDAKEAAMTTTQGQEETEI-IDVSDAE----NR 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G L + C +C N E Y+ +Q RSADE +T +++C C HR +E
Sbjct: 58 G---LPTTEVHCSECGNDEAYWYMQQIRSADESETRFFVCTECEHRWRED 104
>gi|363750516|ref|XP_003645475.1| hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889109|gb|AET38658.1| Hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
Length = 125
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEI-------KRE 57
LFC CG +L + N + CS C + ++ ++ TA++ K+
Sbjct: 7 LLFCLDCGNLLDNPSTVSGNDISCSQCDARYPKSSFSNLKV-VTYTADDAFPSSLRSKKS 65
Query: 58 LGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + ++ + G T +K C +C N EM+Y T Q RSADEG T +Y C CG+R
Sbjct: 66 VVKTTLKKNELKDGAT----IKEKCPQCSNDEMHYHTLQLRSADEGATVFYTCTSCGYR 120
>gi|344302756|gb|EGW33030.1| hypothetical protein SPAPADRAFT_150584 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTML--RMESNHVVCSSC-------KFKKNVQDVADREISYAVTAEEIKRELG 59
+FC +CG +L S+H+ C C KF E ++ T + + +
Sbjct: 7 LIFCTYCGNLLDSHSSSSHIQCHVCHESYPKSKFANLKVITTSSEDAFPSTLKSARSVVK 66
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
SL ++ + D+G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 67 TSL-KKDELDEGAT----IKEKCPKCGNEEMSYHTLQLRSADEGATVFYTCTSCGYR 118
>gi|448720875|ref|ZP_21703469.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
gi|445780488|gb|EMA31370.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
Length = 109
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++ + + +D E + T + + + E +
Sbjct: 3 FCDDCGSMMKADGDRMVCTNDDCGSSSERDSDLEDEFVTT----ESQTDADVIESDENAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 FEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCTECGHR 104
>gi|385803764|ref|YP_005840164.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi C23]
gi|339729256|emb|CCC40490.1| transcription elongation factor TFS [Haloquadratum walsbyi C23]
Length = 107
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 9/110 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG-ISLFEQPQGD 69
FC CG+M++ + + +CS C +++AD S +T+ E ++E G + + + D
Sbjct: 3 FCDECGSMMKKQDDIWICSDC----GAEELADEADSATMTSTESQQESGAVDVSDIDDAD 58
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T C +C N Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 IGPT----TTVICPECGNDTARYEMKQIRAADESETRFFTCTECNHKWRE 104
>gi|328859381|gb|EGG08490.1| hypothetical protein MELLADRAFT_52162 [Melampsora larici-populina
98AG31]
Length = 145
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 59/121 (48%), Gaps = 9/121 (7%)
Query: 4 PLGRDFLFCKFCGTM---LRMESNHVVCSSCKFKKNVQD---VADREISYAVTAE-EIKR 56
P D+L C CG M R + + S+ K+ +Q+ + R S A + KR
Sbjct: 21 PGSEDYLSCDQCGKMELSNRQSKSLIHISTYLSKQKLQEGLEIITRSQSNAFPSSLRQKR 80
Query: 57 ELGIS-LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L S L D+G+ + C KC NP+M Y T Q RSADEG T +Y CP+CGH
Sbjct: 81 ALVQSHLTTNEDQDQGKAA-PLMDEICPKCSNPQMKYHTLQLRSADEGTTVFYECPKCGH 139
Query: 116 R 116
+
Sbjct: 140 K 140
>gi|312379327|gb|EFR25638.1| hypothetical protein AND_26701 [Anopheles darlingi]
Length = 114
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 1 MADPLGRDFLFCKFCGT---MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRE 57
M++ D FC CG+ +LRM + V C SC+ + E+ Y +
Sbjct: 1 MSNSGNTDPGFCPNCGSILPLLRM-ARDVTCFSCQSNFDASAFGTMEVEYTIH------- 52
Query: 58 LGISLFEQPQGDKGETQLSK-------VKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+ +E + D+ E + V R C KC N +M Y+T Q RSADEGQT ++ C
Sbjct: 53 --FNSYENKKSDQAEKTAGEGAADGPIVNRQCPKCGNDQMSYATLQLRSADEGQTVFFTC 110
Query: 111 PRC 113
+C
Sbjct: 111 TKC 113
>gi|345570642|gb|EGX53463.1| hypothetical protein AOL_s00006g329 [Arthrobotrys oligospora ATCC
24927]
Length = 120
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 9 FLFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEI------KRELGI 60
+FC CG +L + + + C+ C +D + R + + K G
Sbjct: 7 LVFCTDCGNLLDRSVGQDKIKCNVCGCIN--KDTSSRTVVTHSNPDAFPSALKQKHSTGQ 64
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+L + G + E + C KC+NP M ++T Q RSADEG T +Y CP CG+R
Sbjct: 65 NLAPEDVGGQAE-----IDTPCPKCENPVMKFTTVQLRSADEGATVFYNCPNCGYR 115
>gi|448305776|ref|ZP_21495704.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
gi|445587776|gb|ELY42026.1| transcription termination factor Tfs [Natronorubrum sulfidifaciens
JCM 14089]
Length = 109
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E +H+VC++ + + + E ++ T + E+ E +
Sbjct: 3 FCDDCGSMMKAEGDHMVCTNDDCGASSERDRENEDAFVTTESQTDAEV----IESDENAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C+ C N E +Y+ +QT SADE T ++ C CG R
Sbjct: 59 FEGKPKATDVVCDDCGNQEAWYTLKQTASADEPPTRFFKCTECGKR 104
>gi|409722961|ref|ZP_11270342.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|448722712|ref|ZP_21705243.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
gi|445788849|gb|EMA39550.1| DNA-directed RNA-polymerase subunit M [Halococcus hamelinensis
100A6]
Length = 106
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC+ C + V A+R ++ T ++ ++ I E D
Sbjct: 3 FCDDCGSMMHADGDEMVCAGCGAR--VAKDAERAAAFVSTEDQTFDDV-IETTE----DA 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ V+ CE+C N +Y+ +QT SADE T ++ C CGHR
Sbjct: 56 ADEGKPTVEIECEECGNDLAWYTIKQTGSADEPPTRFFKCTECGHR 101
>gi|112982786|ref|NP_001037548.1| transcription-associated zinc ribbon protein [Bombyx mori]
gi|89521458|gb|ABD76573.1| transcription-associated zinc ribbon protein [Bombyx mori]
Length = 120
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
Query: 4 PLGRDFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
PL FC CG++L + E V C +CK + + + Y + I +
Sbjct: 6 PLSTSTAFCARCGSILPLLQEFGSVKCYTCKAHYEADNYSKMKFQYTIHFNTISVITNEN 65
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ G +G V+R C KC M Y+T Q RSADEGQT +Y C +C ++
Sbjct: 66 IL-HTDGPEGPV----VERKCAKCGYDRMSYATLQLRSADEGQTVFYTCIKCKYK 115
>gi|448369514|ref|ZP_21556066.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
gi|445650689|gb|ELZ03605.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
Length = 107
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++C DRE E + + + ++ +
Sbjct: 3 FCDDCGSMMKADGDRMVCANC----GATSERDREREDEFVTTEAQTDDDVIESDENANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDI--VCDECGNQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|308802133|ref|XP_003078380.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
gi|116056832|emb|CAL53121.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
Length = 136
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 7 RDFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREIS-----------YAVTAEE 53
R FC CG LR+ +S+ V C C +++ A R+++ + A+E
Sbjct: 4 RGSGFCARCGARLRLSTQSDVVTCGGCGKTHALEEGARRDVTSTRPFGAGERELSCGAKE 63
Query: 54 IKRELGISLFEQPQGDK---GET---QLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTY 107
K G+ P G K GE + + V C KC++ + + T Q RSADEGQT +
Sbjct: 64 FKFHHGVEA-RYPNGTKVGAGEEVTRERATVDEKCPKCKHKGLNFYTMQLRSADEGQTVF 122
Query: 108 YICPRCGH 115
Y CP+C H
Sbjct: 123 YECPKCNH 130
>gi|334182705|ref|NP_001185043.1| uncharacterized protein [Arabidopsis thaliana]
gi|26452990|dbj|BAC43571.1| unknown protein [Arabidopsis thaliana]
gi|332191809|gb|AEE29930.1| uncharacterized protein [Arabidopsis thaliana]
Length = 63
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
D LFC CGTML ++S + C C+ +N +++ D+ ++Y VT E+I+RELGIS
Sbjct: 8 DILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEDIRRELGIS 62
>gi|255540599|ref|XP_002511364.1| hypothetical protein RCOM_1509920 [Ricinus communis]
gi|223550479|gb|EEF51966.1| hypothetical protein RCOM_1509920 [Ricinus communis]
Length = 61
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 1 MADPLGRDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVTAE 52
MA G F+FC CGTML + + NH C CKFKK+ +V+ REI Y VTAE
Sbjct: 1 MALARGGGFMFCDLCGTMLSLTTTNHAECPLCKFKKSASEVSGREICYKVTAE 53
>gi|448366274|ref|ZP_21554528.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
gi|445654883|gb|ELZ07734.1| transcription termination factor Tfs [Natrialba aegyptia DSM 13077]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C +C F K + AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKAEDGVWECGNCGFTK-PKGNADQ---YTVTEDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDATCPECGNDRAYWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|448464448|ref|ZP_21598461.1| transcription termination factor Tfs [Halorubrum kocurii JCM 14978]
gi|448534821|ref|ZP_21621918.1| transcription termination factor Tfs [Halorubrum hochstenium ATCC
700873]
gi|445703972|gb|ELZ55892.1| transcription termination factor Tfs [Halorubrum hochstenium ATCC
700873]
gi|445815560|gb|EMA65483.1| transcription termination factor Tfs [Halorubrum kocurii JCM 14978]
Length = 109
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + A+R+ A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGGTAERDEGLAAEFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|448678561|ref|ZP_21689568.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
gi|445772548|gb|EMA23593.1| DNA-directed RNA-polymerase subunit M [Haloarcula argentinensis DSM
12282]
Length = 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC SC ++K A+ E AVT + + + E D
Sbjct: 3 FCDECGSMMKTDDERWVCGSCGYEKARN--AETEQEMAVTTQGQEESEVVDTSEVDAEDM 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T ++ C +C N +Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 61 GPTTGAR----CPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 105
>gi|452208133|ref|YP_007488255.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
gi|452084233|emb|CCQ37570.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
Length = 107
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC+ CG+++ ++ + +VCSSC + DRE + + + E + + + + P D
Sbjct: 3 FCEECGSLMHVDGDEMVCSSCGASQR----KDRERAESFVSTETQTDDDV-IESSPDADF 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + + +Y+ +QT SADE T ++ C CGHR
Sbjct: 58 -EGKPTATDVICDECGHDKAWYTIKQTGSADEPPTRFFKCTECGHR 102
>gi|284164625|ref|YP_003402904.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|448395734|ref|ZP_21568828.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
gi|284014280|gb|ADB60231.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|445660315|gb|ELZ13111.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D + ++ + A EI
Sbjct: 3 FCDECGSMMKADDGLWKCGSCGYTEPKGDADEYVVTDSQEASEIIES------------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAHCPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|444727237|gb|ELW67738.1| DNA-directed RNA polymerase III subunit RPC10 [Tupaia chinensis]
Length = 108
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + NV + V +R+ +E+ LG
Sbjct: 2 LLFCPSCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C P+CGHR
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHR 105
>gi|448739405|ref|ZP_21721420.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
gi|445800000|gb|EMA50369.1| DNA-directed RNA polymerase subunit M1 [Halococcus thailandensis
JCM 13552]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC +C + K D +E + T + + E+ I + D
Sbjct: 3 FCDECGSMMKTDDGVWVCDNCGYTKPRDDA--KEAAMTTTQGQEESEI-IDV-----SDA 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
L + C +C N E Y+ +Q RSADE +T +++C C HR +E
Sbjct: 55 ENRGLPTTEVHCPECGNDEAYWYMQQIRSADESETRFFVCTECEHRWRED 104
>gi|47210619|emb|CAF93250.1| unnamed protein product [Tetraodon nigroviridis]
Length = 147
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + V C C F V + ++I V ++ +
Sbjct: 19 DLNFCPECGNILPPPGLQDTVRCPRCSFSIPVAEFDGQQIRSTVVLNPAEKSAAVV---- 74
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ + + Q + R C +C M Y TRQ RSADEGQT ++ C C R ES
Sbjct: 75 -EEEDSDLQGPVIDRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCVHCRRRTLES 128
>gi|448440674|ref|ZP_21588752.1| transcription termination factor Tfs [Halorubrum saccharovorum DSM
1137]
gi|445690060|gb|ELZ42281.1| transcription termination factor Tfs [Halorubrum saccharovorum DSM
1137]
Length = 109
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + A+R+ A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGGTAERDEGLAAEFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTANDIVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|327266376|ref|XP_003217982.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Anolis carolinensis]
Length = 120
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CGT+L + + V C C F +VQ+ R I +VT R +L + G
Sbjct: 14 FCPECGTVLPLPGLQDKVACRCCSFFIDVQEFEKRIIDTSVT---FNRTDSTNL--EVDG 68
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
K + + R C +C M Y TRQ RSADEGQT +Y C C
Sbjct: 69 GKA-VKGPLIDRKCPQCGQEGMTYHTRQMRSADEGQTVFYTCIHC 112
>gi|435849025|ref|YP_007311275.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
gi|433675293|gb|AGB39485.1| DNA-directed RNA polymerase, subunit M [Natronococcus occultus SP4]
Length = 107
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VCS+C + DRE E + + + + +
Sbjct: 3 FCDDCGSMMKADGDRMVCSNC----GASNERDREAESEFVTTESQTDNEVIESSEDANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDV--VCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|448384480|ref|ZP_21563318.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
gi|445658546|gb|ELZ11364.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKADDGLWECGSCGYTEPKGD-ADQ---YIVTDDQEVGEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|433592430|ref|YP_007281926.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|448333776|ref|ZP_21522965.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
gi|433307210|gb|AGB33022.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|445621655|gb|ELY75126.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
Length = 102
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y +T ++ E+ S
Sbjct: 3 FCDECGSMMKADDGLWECGSCGYTEPKGD-ADQ---YVITDDQEVGEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|390594980|gb|EIN04388.1| DNA-directed RNA polymerase I kDa polypeptide [Punctularia
strigosozonata HHB-11173 SS5]
Length = 126
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L R + V C C ++ + EI + + L Q
Sbjct: 11 LLFCPDCGTLLDLPRGDEPSVKCDQCGREEPSSSYDNIEIVTRSNPDALPSALRQKRKTQ 70
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ GE+ L KV C C + E Y Q RS DEG T Y C CGH
Sbjct: 71 TKAHSGESALLKVTERCPSCGHDEAYSKEMQLRSVDEGSTILYTCVSCGH 120
>gi|448437410|ref|ZP_21587433.1| transcription termination factor Tfs [Halorubrum tebenquichense DSM
14210]
gi|445681137|gb|ELZ33576.1| transcription termination factor Tfs [Halorubrum tebenquichense DSM
14210]
Length = 109
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + A+R+ A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGGTAERDEGLAAEFESTTEQTGEEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|448415638|ref|ZP_21578293.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445680339|gb|ELZ32786.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC+ CG+M+ +VCSSC + QD ADR + T + ++ E +G
Sbjct: 3 FCEECGSMMHNRDGEMVCSSCGATQE-QD-ADRAAEFVSTEAQDDSDV----IETEEGAN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + CE+C + E +Y+ +QT +ADE T ++ C CG R
Sbjct: 57 FEGKPTATDVTCEECGHGEAWYTIKQTGAADEPPTRFFKCKNCGRR 102
>gi|448738512|ref|ZP_21720536.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
gi|445801640|gb|EMA51969.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
Length = 106
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VCS C + D E++ + + E + + + + D+
Sbjct: 3 FCDSCGSMMHADGDEMVCSDCGARMP----KDEEVAASFVSTESQSDSDVIETSEDAADE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + CE+C +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKP---TAEVECEECGAERAWYTIKQTGSADEPPTRFFKCTECGHR 101
>gi|241951826|ref|XP_002418635.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
gi|223641974|emb|CAX43938.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
Length = 123
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESNH-----VVCSSCKFKK---NVQDVADREISYAVTAEEIKRELGI 60
+FC +CG +L S+ VCS+ K N++ V + + R +
Sbjct: 7 LIFCNYCGNLLDSHSSSSDIKCTVCSAAYPKSKFANLKVVTKSSDDAFPSKLKSARSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + D+G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 67 TSLKKDELDEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTNCGYR 118
>gi|448314876|ref|ZP_21504531.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
gi|445612683|gb|ELY66402.1| transcription termination factor Tfs [Natronococcus jeotgali DSM
18795]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VCS+C DRE E + + + + +
Sbjct: 3 FCDDCGSMMKADGDRMVCSNC----GASSERDREAESEFVTTESQTDDDVIESSEDANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDV--VCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|448446626|ref|ZP_21590848.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
gi|445683770|gb|ELZ36160.1| transcription factor TFIIS [Halorubrum saccharovorum DSM 1137]
Length = 106
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC SC ++ +D D + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDSCGYEIGREDEDDEWTTESQVESEI---VDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
DKG L + C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 56 DKG---LPQTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRED 104
>gi|448361971|ref|ZP_21550584.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
gi|445649651|gb|ELZ02588.1| transcription termination factor Tfs [Natrialba asiatica DSM 12278]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++C DRE E + + + ++ +
Sbjct: 3 FCDDCGSMMKADGDRMVCANC----GATSERDREREDEFVTTEAQTDDDVIESDENANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDI--ICDECGNREAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|448323391|ref|ZP_21512853.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
gi|445599883|gb|ELY53905.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VCS+C DRE E + + I + +
Sbjct: 3 FCDDCGSMMKADGDRMVCSNC----GASSERDREAESEFVTTESQTDDEIIESSEDANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDV--VCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|307194438|gb|EFN76736.1| DNA-directed RNA polymerase I subunit RPA12 [Harpegnathos saltator]
Length = 124
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + V C +CK + + + D ++ + + +
Sbjct: 15 FCPDCGSILPLLGDKGGVTCYACKKEWSSEVFGDMIMTLTL---HFNSKHTYKSAKDADS 71
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+K + + V+R C +CQN +M Y+T Q RSADEGQT +Y C +C ++
Sbjct: 72 NKDDAEGPVVERRCPQCQNDKMSYATLQLRSADEGQTVFYTCTKCKYK 119
>gi|284165382|ref|YP_003403661.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
gi|284015037|gb|ADB60988.1| transcription termination factor Tfs [Haloterrigena turkmenica DSM
5511]
Length = 109
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++ + + DRE A E + + + ++ +
Sbjct: 3 FCDDCGSMMKAQGDRMVCTNEDCGASSE--RDREQEDAFVTTESQTDDDVIESDENANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C+N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 61 GKPKATDV--VCDECENQEAWYTLKQTASADEPPTRFFKCTECGHR 104
>gi|222480409|ref|YP_002566646.1| transcription termination factor Tfs [Halorubrum lacusprofundi ATCC
49239]
gi|222453311|gb|ACM57576.1| transcription termination factor Tfs [Halorubrum lacusprofundi ATCC
49239]
Length = 109
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + +R+ + A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGATTERDEALAAEFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C+KC + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTAKDIVCDKCGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|448377752|ref|ZP_21560448.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
gi|445655696|gb|ELZ08541.1| transcription termination factor Tfs [Halovivax asiaticus JCM
14624]
Length = 107
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + +VC++C + +RE + T + + G L E +
Sbjct: 3 FCDECGSMMKPEGDQLVCAACG--AAIDRDREREADFVTT----ETQTGDELIETEENAD 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C E +Y +QT SADE T ++ C CGH+
Sbjct: 57 FEGKPKATDVRCDQCGTEEAWYYIQQTASADEPPTRFFKCTECGHK 102
>gi|17558010|ref|NP_506572.1| Protein RPOA-12 [Caenorhabditis elegans]
gi|3874352|emb|CAB02739.1| Protein RPOA-12 [Caenorhabditis elegans]
Length = 119
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 5 LGRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
L D FC +CG +L + + SCK V +R + V+ E E ++ +
Sbjct: 6 LSYDDDFCGYCGAILELPAQAPATVSCKVCSTRWAVKER-VDQVVSRVEKIYERTVADTD 64
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ D E+ + V C KC + + YST QTRSADEGQT +Y C +C
Sbjct: 65 GIEND--ESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKC 111
>gi|356541743|ref|XP_003539333.1| PREDICTED: uncharacterized protein LOC100810382 [Glycine max]
Length = 393
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+ +I+RELG+ + E+ + SKV + CEKC + E Y TRQ RSAD+GQTT C
Sbjct: 328 SRDIRRELGMEIIEE----HTVMEYSKVSKKCEKCGHGEATYYTRQMRSADKGQTTLCTC 383
Query: 111 PRCGHRCQES 120
GH QE+
Sbjct: 384 TGYGHPSQEN 393
>gi|453081704|gb|EMF09752.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Mycosphaerella
populorum SO2202]
Length = 123
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K+ + C +C +PEMY++ Q RSADEG T +Y+C CGHR +E
Sbjct: 79 KISQTCPECASPEMYFTALQLRSADEGTTVFYVCHECGHRYKE 121
>gi|402470252|gb|EJW04596.1| hypothetical protein EDEG_01180 [Edhazardia aedis USNM 41457]
Length = 99
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 61/111 (54%), Gaps = 21/111 (18%)
Query: 10 LFCKFCGTMLRMESNH--VVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+FC +CGT+LR S+ +C++C +F K + + +T +E E+ I +
Sbjct: 1 MFC-YCGTLLRYPSSDCLTICTNCGEQFNKTIFEPL-------ITIKEYHEEIEIVV--- 49
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ KG +K++ C C EMYY T QTRSADEGQT +Y C CG++
Sbjct: 50 -KKSKG----AKIRYKCNNCGAEEMYYYTMQTRSADEGQTVFYECD-CGYK 94
>gi|448348518|ref|ZP_21537367.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
gi|445642885|gb|ELY95947.1| transcription termination factor Tfs [Natrialba taiwanensis DSM
12281]
Length = 107
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++C DRE E + + + + +
Sbjct: 3 FCDDCGSMMKADGDRMVCANC----GATSERDREREDEFVTTEAQTDDDVIESDANANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPKATDI--VCDECGNQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|321261337|ref|XP_003195388.1| RNA polymerase III smallest subunit [Cryptococcus gattii WM276]
gi|317461861|gb|ADV23601.1| RNA polymerase III smallest subunit, putative [Cryptococcus gattii
WM276]
Length = 131
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISY--AVTAEEIKRELGISL 62
LFC +C L R +S VC +C + Q + +R+IS + +E+ LG
Sbjct: 1 MLFCPYCANSLTIGDREDSTDKVCPTCPY----QFIIERQISMRTHLKRKEVDDVLG--- 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K AC KC + Y+ Q RSADE TT+Y C CGH+ +E
Sbjct: 54 -----GKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105
>gi|385804662|ref|YP_005841062.1| DNA-directed RNA polymerase subunit M3 [Haloquadratum walsbyi C23]
gi|339730154|emb|CCC41473.1| transcription elongation factor TFS [Haloquadratum walsbyi C23]
Length = 106
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ +VCSSC ++ + + IS + G L E +
Sbjct: 3 FCDECGSMMKKVDGVMVCSSCGYEAEQEGGVEEFIS-------TTEQTGDELIETSEDAN 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C N + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 56 FEGKPTAKDVTCDDCGNGKAWYTIKQTGSADEPPTRFFKCTECGNRWRE 104
>gi|284005380|ref|NP_001164882.1| DNA-directed RNA polymerase III subunit RPC10 [Oryctolagus
cuniculus]
gi|218157235|gb|ACK58460.1| DNA-directed RNA polymerase III subunit RPC10 (predicted)
[Oryctolagus cuniculus]
Length = 108
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C P+CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGHRWRD 108
>gi|134114353|ref|XP_774105.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256738|gb|EAL19458.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 132
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISY--AVTAEEIKRELGISL 62
LFC +C L R +S VC +C + Q + +R+IS + +E+ LG
Sbjct: 1 MLFCPYCANSLTIGDREDSTDKVCPTCPY----QFIIERQISMRTHLKRKEVDDVLG--- 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K AC KC + Y+ Q RSADE TT+Y C CGH+ +E
Sbjct: 54 -----GKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105
>gi|58269278|ref|XP_571795.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228031|gb|AAW44488.1| RNA polymerase III smallest subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 132
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 18/117 (15%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISY--AVTAEEIKRELGISL 62
LFC +C L R +S VC +C + Q + +R+IS + +E+ LG
Sbjct: 1 MLFCPYCANSLTIGDREDSTDKVCPTCPY----QFIIERQISMRTHLKRKEVDDVLG--- 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K AC KC + Y+ Q RSADE TT+Y C CGH+ +E
Sbjct: 54 -----GKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105
>gi|66735410|gb|AAY53887.1| DNA-dependent RNA polymerase subunit M [Thermococcus thioreducens]
Length = 110
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + E K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKKKVWVCRSCGYEEPFDEKKDREKTVIKQKVEHKPDEGIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 60 --DVKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRCTKCGH 104
>gi|110668318|ref|YP_658129.1| DNA-directed RNA polymerase subunit M1 [Haloquadratum walsbyi DSM
16790]
gi|109626065|emb|CAJ52516.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
Length = 107
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG-ISLFEQPQGD 69
FC CG+M++ + + CS C +++AD S +T+ E ++E G + + + D
Sbjct: 3 FCDECGSMMKKQDDIWTCSDC----GAEELADEADSATMTSTESQQESGAVDVSDIDDAD 58
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T C +C N Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 IGPT----TTVICPECGNDTARYEMKQIRAADESETRFFTCTECNHKWRE 104
>gi|383620681|ref|ZP_09947087.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|448698276|ref|ZP_21698915.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|445780895|gb|EMA31765.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
Length = 102
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGLWKCGSCGYTEPKGD-ADQ---YVVTDSQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C + Y+ +Q R+ADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDAHCPECGHDRAYWYMKQIRAADESETRFFICSECEHKWRE 99
>gi|383624797|ref|ZP_09949203.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|448697216|ref|ZP_21698294.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
gi|445781595|gb|EMA32447.1| transcription termination factor Tfs [Halobiforma lacisalsi AJ5]
Length = 109
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++ + + +D E + T + + ++ E +
Sbjct: 3 FCDECGSMMKADGDRMVCTNEDCGASSERDSDLEDEFVTTESQSEDDV----IESSEDAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 FEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCTECGHR 104
>gi|448327639|ref|ZP_21516961.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
gi|445617268|gb|ELY70866.1| transcription termination factor Tfs [Natrinema versiforme JCM
10478]
Length = 102
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E C SC + + D AD+ Y +T + +E+G + E
Sbjct: 3 FCDECGSMMKAEDGIWECGSCGYTEPKGD-ADQ---YVITDD---QEIG-EVIES----S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GET L + C +C N ++ +Q R+ADE +T ++IC C H+ +E
Sbjct: 51 GETSLPETDARCPECGNDRAHWYMQQIRAADESETRFFICTECEHKWRED 100
>gi|320166147|gb|EFW43046.1| hypothetical protein CAOG_08178 [Capsaspora owczarzaki ATCC 30864]
Length = 120
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 16/109 (14%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL-FEQPQ 67
FCK CGT+L + + ++ C++C +++AD E+ ++ R F++P+
Sbjct: 14 FCKDCGTVLDLSADDDYASCNACG---KSREMADFEL-------QVTRSYSHPFAFQKPK 63
Query: 68 GDK---GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ G+T+ + + C C +PEM + T Q RS DEGQT +Y C +C
Sbjct: 64 YNTMKVGKTKGATINEKCPSCGHPEMMFRTMQLRSVDEGQTVFYDCEKC 112
>gi|261402507|ref|YP_003246731.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
gi|261369500|gb|ACX72249.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
Length = 107
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C+ C +++ +V++ E Y E K+E I++ E D+
Sbjct: 4 FCPKCKNLMLPKDGKLKCAVCGYEEETAEVSN-EYEYKEHLEPKKKE--ITVIE----DE 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L + C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 57 GLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 105
>gi|448392460|ref|ZP_21567234.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
gi|445664550|gb|ELZ17259.1| transcription termination factor Tfs [Haloterrigena salina JCM
13891]
Length = 109
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC++ + DRE A E + + + ++ +
Sbjct: 3 FCDDCGSMMKAQGDRMVCTNDDCGAASE--RDREQEDAFVTTESQTDDDVIESDENANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C+N E +Y+ +QT SADE T ++ C CGHR
Sbjct: 61 GKPKATDV--ICDECENQEAWYTLKQTASADEPPTRFFKCTECGHR 104
>gi|213510798|ref|NP_001134399.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|209732998|gb|ACI67368.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|223646310|gb|ACN09913.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
gi|223672157|gb|ACN12260.1| DNA-directed RNA polymerase I subunit RPA12 [Salmo salar]
Length = 117
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG +L + + V C C F V + + +EI +V ++ +++ E+
Sbjct: 10 FCPECGNVLPLPGLQDTVSCPRCAFSLPVTEFSGQEIRSSVVFNPLEGS-SVAVEEEDSE 68
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
KG + + R C +C M Y TRQ RSADEGQT ++ C C
Sbjct: 69 LKG----AVIDRRCSRCNKEGMVYHTRQMRSADEGQTVFFTCMHC 109
>gi|313125712|ref|YP_004035982.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448285551|ref|ZP_21476793.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292077|gb|ADQ66537.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445576559|gb|ELY31012.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + +VCSSC + D +++ + E + + + E +G
Sbjct: 3 FCDECGSMMHNQDGQMVCSSCGATQE----QDSDLASEFVSTEAQDDSDV--IETEEGAN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + CE C + E +Y+ +QT SADE T ++ C CG R
Sbjct: 57 FEGKPTATDVTCEDCGHGEAWYTIKQTGSADEPPTRFFKCKNCGRR 102
>gi|289580310|ref|YP_003478776.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448283980|ref|ZP_21475245.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448352979|ref|ZP_21541757.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
gi|289529863|gb|ADD04214.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445572075|gb|ELY26617.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445641046|gb|ELY94129.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
Length = 107
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ E + +VC++C +RE + T + E+ E +
Sbjct: 3 FCDDCGSMMMAEDDRMVCTNCGAASERD--REREDEFVTTESQTDDEV----IESDENAN 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C E +Y+ +QT SADE T ++ C CGHR
Sbjct: 57 FEGKPKATDVVCDECGTQEAWYTLKQTASADEPPTRFFKCTECGHR 102
>gi|397589808|gb|EJK54805.1| hypothetical protein THAOC_25535 [Thalassiosira oceanica]
Length = 321
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 9 FLFCKFCGTMLRME-SNHVVCSSCKFKKNV-----QDV-------ADREISYAVTAEEIK 55
+ FC C L ++ S V CS C + N+ +D+ ADR + ++E +
Sbjct: 205 WPFCPGCHNTLSVDGSGAVRCSICHYSTNLSQYSKEDLPSRTTTSADRSVPLWAKSDEEQ 264
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L ++GE + V+ C KC PE+ + T Q RS DEGQT +Y CP+C +
Sbjct: 265 AALK---------NQGEPKRMVVEEPCPKCGAPEVGFYTLQLRSVDEGQTVFYECPQCSY 315
>gi|390962022|ref|YP_006425856.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
gi|390520330|gb|AFL96062.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
Length = 110
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC ++ + DRE + E K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGHEEPFDEQKDREKTRITQKVEHKPDEGIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 60 --DVKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 104
>gi|156548560|ref|XP_001605743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Nasonia vitripennis]
Length = 108
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRMESNHV----VCSSCKFKKNVQDVADREISYAVTAE--EIKRELGISL 62
LFC CG +L +E V C++C + N+ +R +S + E+ LG
Sbjct: 2 LLFCPTCGNVLHVEEGTVSMRFACNTCPYISNI----NRRVSSRTYPKLKEVDDVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + C KC N Y+ QTRSADE TT+Y C P+CGH +E
Sbjct: 55 -----GSAAWENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCNPQCGHNWRE 108
>gi|444319462|ref|XP_004180388.1| hypothetical protein TBLA_0D03700 [Tetrapisispora blattae CBS 6284]
gi|387513430|emb|CCH60869.1| hypothetical protein TBLA_0D03700 [Tetrapisispora blattae CBS 6284]
Length = 125
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFK------KNVQDVADREISYAVTAEEIKREL 58
+FC CG +L S + + CS C+ K KN++ + + KR +
Sbjct: 7 LIFCLDCGNLLDNASTTMGSEIECSQCQAKYPKSKYKNLKVITSTSDDAFPSTLRSKRSV 66
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + +G T +K C KC N EM Y T Q RSADEG T +Y C CG++
Sbjct: 67 VKTSLKKDELKEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTGCGYK 120
>gi|448475092|ref|ZP_21602810.1| transcription termination factor Tfs [Halorubrum aidingense JCM
13560]
gi|445816563|gb|EMA66450.1| transcription termination factor Tfs [Halorubrum aidingense JCM
13560]
Length = 109
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + +R+ S A E + G + E +G
Sbjct: 3 FCDDCGSMMVAHDGEMVCQN----DDCGATTERDESLAAQFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + CE+C + E +Y+ +QT +ADE T ++ C CG R
Sbjct: 59 FEGKPTATDVVCEECGHGEAWYTIKQTGAADEPPTRFFKCKECGRR 104
>gi|448309842|ref|ZP_21499695.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
gi|445588863|gb|ELY43102.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
Length = 102
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ C SC + K D + Y VT ++ E+ S
Sbjct: 3 FCDECGSMMKANDGIWECGSCGYTKPKGDAS----KYTVTDDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GET L + C +C N ++ +Q RSADE +T ++IC C ++ +E
Sbjct: 51 GETSLPETDAHCPECGNDRAHWYMQQIRSADESETRFFICTECEYKWRE 99
>gi|302850349|ref|XP_002956702.1| hypothetical protein VOLCADRAFT_107352 [Volvox carteri f.
nagariensis]
gi|300258063|gb|EFJ42304.1| hypothetical protein VOLCADRAFT_107352 [Volvox carteri f.
nagariensis]
Length = 124
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 7 RDFLFCKFCGTMLRMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
++++FC G +L ++ V C +++++ +++ ++ E+ +R +
Sbjct: 5 KEWMFCPKSGYLLSLDPQRQVAACQVSGYERSLAELSAVKVVLRTDMEDYRRRFALEPLV 64
Query: 65 QPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D E L KRA C KCQ+ M Y T Q RSADEGQT +Y C +CG++
Sbjct: 65 KSVED--EELLKGRKRATVDEPCPKCQHRPMEYYTMQLRSADEGQTVFYECRKCGYK 119
>gi|19173459|ref|NP_597262.1| DNA-DIRECTED RNA POLYMERASE I SUBUNIT M [Encephalitozoon cuniculi
GB-M1]
gi|19171048|emb|CAD26438.1| DNA-DIRECTED RNA POLYMERASE I SUBUNIT M [Encephalitozoon cuniculi
GB-M1]
gi|449328915|gb|AGE95191.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon cuniculi]
Length = 99
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 17/109 (15%)
Query: 10 LFCKFCGTML--RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+FC CGT++ R +S+ V C CK + +V I T +++R+L I +
Sbjct: 1 MFC-ICGTLVYVRSDSSRVECPRCKRENSVA-----MIKPTYTEVKVQRDLHIEAVD--- 51
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q +K+K C C EM Y+T Q RS DEGQT +Y C +CG+R
Sbjct: 52 -----VQGAKIKHRCPACGAEEMMYNTAQLRSTDEGQTVFYSC-KCGYR 94
>gi|291405015|ref|XP_002719011.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide K-like
[Oryctolagus cuniculus]
Length = 152
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L ME + C++C + N+ + V +++ +E+ LG
Sbjct: 46 LLFCPGCGNGLIMEEGQRCDRFACNTCPYVHNITRKVINQKYP---KLKEVDNMLG---- 98
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSAD+ TT+Y C P+CGHR ++
Sbjct: 99 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADKPMTTFYKCCSPQCGHRWRD 152
>gi|295670029|ref|XP_002795562.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226284647|gb|EEH40213.1| DNA-directed RNA polymerase I subunit RPA12 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 124
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI--SL 62
+FC CG +LR E+ ++C C K +D A + I+ L S
Sbjct: 7 LIFCMDCGNLLRESFGDENAILICELCGAKN--KDTASKTITSESKPNAFPSALRTKRSS 64
Query: 63 FEQPQGD--KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D KGE S+ +C +C PEM Y T Q RSADEG T +Y C CGH+
Sbjct: 65 VQTLTADDKKGEAIASE---SCPECGRPEMRYYTLQIRSADEGTTVFYTCEGCGHK 117
>gi|448420369|ref|ZP_21581116.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445673520|gb|ELZ26080.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC +C F+K +D A +E TA E+ + + E +
Sbjct: 3 FCDECGSMMKTDGGVWVCGNCGFEK-ARDSA-KEDHMTSTAAREDSEV-VDMSEVDDAEI 59
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T K C +C + Y +Q RSADE +T ++ C CGH+ +E
Sbjct: 60 GPTTTVK----CPECGHDRARYEMKQIRSADESETRFFTCVECGHKWRE 104
>gi|433638977|ref|YP_007284737.1| transcription factor S, archaeal [Halovivax ruber XH-70]
gi|433290781|gb|AGB16604.1| transcription factor S, archaeal [Halovivax ruber XH-70]
Length = 107
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + +VC++C + DRE E + + + E+ +
Sbjct: 3 FCDECGSMMKPEGDQLVCTACDATID----RDREQEADFVTTETQTDDEVIETEENADFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V+ C++C E +Y +QT SADE T ++ C CGH+
Sbjct: 59 GKPKATDVR--CDQCGTEEAWYYIQQTASADEPPTRFFKCTECGHK 102
>gi|448424321|ref|ZP_21582371.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|448448783|ref|ZP_21591368.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|448479265|ref|ZP_21604117.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
gi|448506351|ref|ZP_21614461.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|448524804|ref|ZP_21619446.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445682314|gb|ELZ34733.1| transcription factor TFIIS [Halorubrum terrestre JCM 10247]
gi|445700001|gb|ELZ52019.1| transcription factor TFIIS [Halorubrum distributum JCM 9100]
gi|445700170|gb|ELZ52181.1| transcription factor TFIIS [Halorubrum distributum JCM 10118]
gi|445814257|gb|EMA64224.1| transcription factor TFIIS [Halorubrum litoreum JCM 13561]
gi|445822543|gb|EMA72307.1| transcription factor TFIIS [Halorubrum arcis JCM 13916]
Length = 106
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC +C ++ D D + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDACGYEIGRDDGDDEWTTQSQVESEI---VDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
DKG L C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 56 DKG---LPTTTAQCPECDNDRAYWYMQQIRSADESETRFFVCTECEHKWRED 104
>gi|3024569|sp|Q56254.1|RPOM_THECE RecName: Full=DNA-directed RNA polymerase subunit M
gi|443693|gb|AAA72052.1| RNA polymerase [Thermococcus celer]
Length = 110
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + + K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 60 --DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 104
>gi|448320129|ref|ZP_21509617.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
gi|445606535|gb|ELY60439.1| transcription termination factor Tfs [Natronococcus amylolyticus
DSM 10524]
Length = 102
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC F K D A+ Y +T ++ E+ S
Sbjct: 3 FCDECGSMMKADDGIWECGSCGFTKPQGDAAE----YTLTDDQEASEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q RSADE +T ++IC C ++ +E
Sbjct: 51 EETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICSECEYKWRE 99
>gi|347522734|ref|YP_004780304.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
gi|343459616|gb|AEM38052.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
Length = 114
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 13/116 (11%)
Query: 11 FCKFCGTML--RMESNHVV--CSSCKFKKNVQ---DVADREISYAVTAEEIKRELGISLF 63
FC CGT++ R E+ VV C C ++ DVA R + + E ++ + I
Sbjct: 3 FCPRCGTLMAPRRENEQVVYVCPKCGHREGAAGAGDVASRVLVTTIKHSEKEKLVVI--- 59
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + E L K + C +C + E YY QTR ADE T +Y C +CGH +E
Sbjct: 60 ---ESNMEEKLLPKTRIQCPRCSHDEAYYWVVQTRRADEPPTRFYKCTKCGHVWRE 112
>gi|448309600|ref|ZP_21499457.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
gi|445589724|gb|ELY43950.1| transcription termination factor Tfs [Natronorubrum bangense JCM
10635]
Length = 109
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + +VC++ +++ ++E ++ T + E+ E +
Sbjct: 3 FCDDCGSMMKAEGDRMVCTNDDCGASLERDREQEDAFVTTESQTDAEV----IESDENAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + C++C N E +Y+ +QT SADE T ++ C CG R
Sbjct: 59 FEGKPKATDVICDECGNQEAWYTLKQTASADEPPTRFFKCTECGKR 104
>gi|363739487|ref|XP_001231486.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Gallus
gallus]
Length = 108
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L E + C++C + +NV + V+ R+ +E+ LG
Sbjct: 2 LLFCPACGNVLVAEEGPRCHRFACTTCPYVRNVTRKVSSRKYP---RLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|336255048|ref|YP_004598155.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
gi|335339037|gb|AEH38276.1| transcription termination factor Tfs [Halopiger xanaduensis SH-6]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGLWKCGSCGYTEPKGD-ADQ---YIVTDSQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C N Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAHCPECGNDRAYWYMQQIRSADESETRFFICTECEHKWRE 99
>gi|257389226|ref|YP_003178999.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
gi|257171533|gb|ACV49292.1| transcription termination factor Tfs [Halomicrobium mukohataei DSM
12286]
Length = 107
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E VC SC ++ +D AD E S T + + E+ + E D
Sbjct: 3 FCDDCGSMMKAEDGVWVCGSCGAER-ARDAAD-ESSMVTTQGQEESEI-VDTSEVEAEDM 59
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T + C +C N ++ +Q R+ADE +T ++ C C H+ +E
Sbjct: 60 GPTTDAH----CPECGNDRAFWEMKQIRAADESETRFFTCTECDHKWRE 104
>gi|448360157|ref|ZP_21548799.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
gi|445640107|gb|ELY93197.1| transcription termination factor Tfs [Natrialba chahannaoensis JCM
10990]
Length = 102
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + K D + Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGLWECGSCGYTKPKGDADE----YVVTDSQEATEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 DETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICSECEHKWRE 99
>gi|167520890|ref|XP_001744784.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777115|gb|EDQ90733.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGIS 61
+FC CG ML M+S+ C++C +K + + A R + + A+EI
Sbjct: 1 MIFCPLCGNMLIMQSSLHGYFFGCNTCPYKHELGEHRVTARRSMHHDERADEIY------ 54
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
GD + + + C KC + Y +QTRSADE T +Y C +C H+
Sbjct: 55 -----GGDSAKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFYCCEKCNHK 104
>gi|448490389|ref|ZP_21607977.1| transcription termination factor Tfs [Halorubrum californiensis DSM
19288]
gi|445693993|gb|ELZ46131.1| transcription termination factor Tfs [Halorubrum californiensis DSM
19288]
Length = 109
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + +R+ + A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGATTERDEALAAEFESTTEQTGEEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 59 FEGKPTANDIVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 104
>gi|332030035|gb|EGI69860.1| DNA-directed RNA polymerase I subunit RPA12 [Acromyrmex echinatior]
Length = 137
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + E V C +CK + + + D ++++ + ++ +S+ E+
Sbjct: 15 FCPDCGSILPLLGEKGGVTCYTCKREWDAEVFGDMKMTHTIHFN--TKDTYVSVKEEEDD 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ + V+R C +C N +M Y+T Q RSADEGQT ++ C +C
Sbjct: 73 SEDDADGPTVERECPQCYNDKMSYATLQLRSADEGQTVFFTCTKC 117
>gi|110669074|ref|YP_658885.1| DNA-directed RNA polymerase subunit M2 [Haloquadratum walsbyi DSM
16790]
gi|109626821|emb|CAJ53289.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
gi|148508173|gb|ABQ75964.1| DNA-directed RNA polymerase subunit M2 [uncultured haloarchaeon]
Length = 106
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 7/106 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +VC SC ++ + D I V+ ++ E + E +G +
Sbjct: 3 FCDECGSMMKKRNEQMVCGSCGYQTD----QDSAIGNFVSTQKQTDE---DIIETEEGAE 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C++ +Y+ +QT SADE T ++ C CG+R
Sbjct: 56 FEGKPTDDNVICDECEHTVAWYTIKQTGSADEPPTRFFKCKECGYR 101
>gi|157126222|ref|XP_001660856.1| DNA-directed RNA polymerase I, 12kD-subunit, putative [Aedes
aegypti]
gi|108873327|gb|EAT37552.1| AAEL010468-PB [Aedes aegypti]
Length = 121
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 11 FCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + V C +C N E++Y + + + ++ +
Sbjct: 11 FCADCGSILPLMRMTGTVHCYNCHKVYNEGAFGTMEVAYTIHFNSYENKKAGQQQDRQKA 70
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D + + V R C KC N +M Y+T Q RSADEGQT ++ C +C
Sbjct: 71 DAADGPI--VSRKCPKCGNDKMSYATLQLRSADEGQTVFFTCTKC 113
>gi|157126224|ref|XP_001660857.1| DNA-directed RNA polymerase I, 12kD-subunit, putative [Aedes
aegypti]
gi|108873328|gb|EAT37553.1| AAEL010468-PA [Aedes aegypti]
Length = 124
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 11 FCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + V C +C N E++Y + + + ++ +
Sbjct: 14 FCADCGSILPLMRMTGTVHCYNCHKVYNEGAFGTMEVAYTIHFNSYENKKAGQQQDRQKA 73
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D + + V R C KC N +M Y+T Q RSADEGQT ++ C +C
Sbjct: 74 DAADGPI--VSRKCPKCGNDKMSYATLQLRSADEGQTVFFTCTKC 116
>gi|21956651|gb|AAM83406.1| POLR3K [Sphoeroides nephelus]
Length = 108
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCMRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR +E
Sbjct: 55 ----GAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRWRE 108
>gi|448435800|ref|ZP_21586868.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
gi|445683235|gb|ELZ35635.1| transcription factor TFIIS [Halorubrum tebenquichense DSM 14210]
Length = 106
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC SC + D D + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDSCGHEIGRDDGDDEWTTQSQVESEI---VDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
DKG L C +C N + Y+ +Q R+ADE +T +++C C H+ +E
Sbjct: 56 DKG---LPTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCTECEHKWRED 104
>gi|341878102|gb|EGT34037.1| hypothetical protein CAEBREN_13486 [Caenorhabditis brenneri]
Length = 119
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 9/106 (8%)
Query: 11 FCKFCGTMLRMES---NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC +CG +L + + + V C C K V++ ++ +S +++ ++ +
Sbjct: 12 FCGYCGAILELPAQAPSSVTCKVCATKWAVKERVEQIVS------RVEKIYERTVADTDG 65
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ E+ + V C KC + + YST QTRSADEGQT +Y C +C
Sbjct: 66 IENDESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTCLKC 111
>gi|313236269|emb|CBY11591.1| unnamed protein product [Oikopleura dioica]
Length = 109
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNHVV----CSSCKFKKNVQD-VADREISYAVTAEEIKRELGISLF 63
LFC CG +L++ S V C +C + N+ D + +++ +E++ +G
Sbjct: 3 LLFCPICGGLLKVGSGSAVQRMECLTCPYIHNIMDPLTNKKFP---RLKELRDVMG---- 55
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GD ++ AC E C N Y+ QTRSADE TT+Y C C H+ +E
Sbjct: 56 ----GDAAWENADSMEEACTREGCTNRRAYFFQLQTRSADEPMTTFYRCTDCAHQWKE 109
>gi|448578279|ref|ZP_21643714.1| DNA-directed RNA polymerase subunit M2 [Haloferax larsenii JCM
13917]
gi|445726820|gb|ELZ78436.1| DNA-directed RNA polymerase subunit M2 [Haloferax larsenii JCM
13917]
Length = 109
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + C++ + ADR+ A + + G L E +G
Sbjct: 3 FCDECGSMMVSQDGTMACTN----DECEGTADRDEDLAEQFVSTEVQSGDELIETEEGAD 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C++C + E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVVCDECGHTEAWYTIKQTASADEPPTRFFKCQECGYRWRE 107
>gi|448107368|ref|XP_004205344.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|448110344|ref|XP_004201608.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359382399|emb|CCE81236.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
gi|359383164|emb|CCE80471.1| Piso0_003588 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVT------AEEIKRELGI 60
+FC CG +L SN + C C AD +++ + A +++R +
Sbjct: 7 LIFCTSCGNLLDKISNSTSLNCKLCNESYPASKFADLKVTTTSSEDAFPSALKMQRSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++ + D+G T +K C +C EM Y T Q RSADEG T +Y C CG++
Sbjct: 67 TSLKKDELDEGAT----IKEKCPRCGCEEMKYHTLQLRSADEGATVFYTCTDCGYK 118
>gi|448355098|ref|ZP_21543851.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
gi|445635863|gb|ELY89028.1| transcription termination factor Tfs [Natrialba hulunbeirensis JCM
10989]
Length = 102
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ ++ C SC + K D + Y VT + E+ S
Sbjct: 3 FCDECGSMMKADNGLWECGSCGYTKPKGDADE----YVVTDSQEATEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICSECEHKWRE 99
>gi|448529168|ref|ZP_21620427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
gi|445709601|gb|ELZ61427.1| transcription factor TFIIS [Halorubrum hochstenium ATCC 700873]
Length = 106
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC SC + D D + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDSCGNEIGRDDSDDEWTTQSQVESEI---VDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DKG L C +C N + Y+ +Q R+ADE +T +++C C H+ +E
Sbjct: 56 DKG---LPTTTAQCPECDNDQAYWYMQQIRAADESETRFFVCTECEHKWRE 103
>gi|367015144|ref|XP_003682071.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
gi|359749733|emb|CCE92860.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
Length = 125
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 16/119 (13%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEI-------KRE 57
+FC CG +L + + + C C+ ++ ++ TAE+ K+
Sbjct: 7 LIFCLDCGNLLDNPNTVSGSQIACDQCQATYPKSQFSNLKV-LTTTAEDAFPSALRSKKS 65
Query: 58 LGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + ++ + ++G T ++ C KC N EM+Y T Q RSADEG T +Y C +CG++
Sbjct: 66 VVKTSLKKDELEEGAT----IREKCPKCGNEEMHYHTLQLRSADEGATVFYTCTQCGYK 120
>gi|255712113|ref|XP_002552339.1| KLTH0C02552p [Lachancea thermotolerans]
gi|238933718|emb|CAR21901.1| KLTH0C02552p [Lachancea thermotolerans CBS 6340]
Length = 125
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSC-------KFK--KNVQDVADREISYAVTAEEIK 55
+FC CG +L +E + C+ C KF + V AD A+ + K
Sbjct: 7 LIFCAECGNLLDNPSAVEGAQLECAQCGAEYAKAKFSNLRVVTSTADDAFPSALRS---K 63
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + + ++ + ++G T ++ C +C N EM+Y T Q RSADEG T +Y C CG+
Sbjct: 64 KSVVKTSLKKDELEEGAT----IREKCPQCGNDEMHYHTLQLRSADEGATVFYTCTSCGY 119
Query: 116 R 116
R
Sbjct: 120 R 120
>gi|240103105|ref|YP_002959414.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
gi|239910659|gb|ACS33550.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
Length = 110
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + E K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHKPDEGIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CG+
Sbjct: 60 --DLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGY 104
>gi|190402235|gb|ACE77649.1| DNA-directed RNA polymerase III subunit RPC10 (predicted) [Sorex
araneus]
Length = 108
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPSCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KCQ+P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 55 ----GAAAWENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 105
>gi|335433765|ref|ZP_08558581.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898403|gb|EGM36511.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 107
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + +VC SC +++ D+E++ + + + + + E+ +
Sbjct: 3 FCDECGSMMHADGEEMVCQSCGYREP----KDQELAEDFVSTQDQTDDDVIETEEDANFE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ V C++C + +Y+ +QT SADE T ++ C CGHR
Sbjct: 59 GKPTADDV--VCDECGHGVAWYTIKQTGSADEPPTRFFKCKECGHR 102
>gi|261188676|ref|XP_002620752.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239593110|gb|EEQ75691.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239606264|gb|EEQ83251.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327355957|gb|EGE84814.1| DNA-directed RNA polymerase I polypeptide [Ajellomyces dermatitidis
ATCC 18188]
Length = 122
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +LR + ++C C K +D A + I T+E +L
Sbjct: 7 LIFCTDCGNLLRESTGDKNAILICELCGTKN--RDTASKTI----TSESKPDAFPSALRT 60
Query: 65 QPQGDKGETQLSK-----VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + T K + +C +C PEM Y T Q RSADEG T +Y C CGH+
Sbjct: 61 KRSAVQTLTAADKRGDAIAQESCPECDRPEMRYHTLQLRSADEGSTVFYSCEGCGHK 117
>gi|289582404|ref|YP_003480870.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|448282173|ref|ZP_21473462.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|289531957|gb|ADD06308.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
gi|445576807|gb|ELY31255.1| transcription termination factor Tfs [Natrialba magadii ATCC 43099]
Length = 102
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + K D + Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGLWECGSCGYTKPKGDADE----YVVTDSQEATEVIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q RSADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAHCPECGHDRAYWYMQQIRSADESETRFFICSECEHKWRE 99
>gi|429962524|gb|ELA42068.1| hypothetical protein VICG_00917 [Vittaforma corneae ATCC 50505]
Length = 101
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
L Q + + + + +++ +C KC PEM YST Q RSADEGQT +Y C CG++
Sbjct: 42 LTRQDEHEDVQVRGARISLSCPKCNRPEMMYSTAQLRSADEGQTVFYSCEGCGYK 96
>gi|399218133|emb|CCF75020.1| unnamed protein product [Babesia microti strain RI]
Length = 221
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 56 RELGISLFEQPQGD--KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E ISL E + KG TQ VK C+KC N E YYST Q RSADEG T Y C C
Sbjct: 157 NETNISLLEMAKSSFSKG-TQ--TVKEICQKCGNEEQYYSTFQARSADEGMTIMYECTSC 213
Query: 114 GHR 116
G+R
Sbjct: 214 GNR 216
>gi|448606130|ref|ZP_21658709.1| DNA-directed RNA polymerase subunit M2 [Haloferax sulfurifontis
ATCC BAA-897]
gi|445739547|gb|ELZ91054.1| DNA-directed RNA polymerase subunit M2 [Haloferax sulfurifontis
ATCC BAA-897]
Length = 109
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVSQNGAMTCTN----DDCEGTAERDEELAAEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C + E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDDCGHTEAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|401625027|gb|EJS43053.1| rpa12p [Saccharomyces arboricola H-6]
Length = 125
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKF---------KKNVQDVADREISYAVTAEEIK 55
+FC CG +L S ++V CS CK K V AD A+ A++
Sbjct: 7 LIFCLDCGDLLENPSAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSALRAKKSV 66
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + E G + +K C +C N EM Y T Q RSADEG T +Y C CG+
Sbjct: 67 VKTSLKKNELKDG-------ATIKERCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119
Query: 116 R 116
+
Sbjct: 120 K 120
>gi|150400651|ref|YP_001324417.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
gi|150013354|gb|ABR55805.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
Length = 103
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + +++VC+ C F++ ++ E+ + E K+E+ + +
Sbjct: 4 FCPKCNNIMLPKEDNLVCTVCGFEEELEKTESYELKEKL---ETKQEIVVI--------E 52
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C C N E+Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 53 DVNTLPTTRIECPNCGNMEVYWWLQQTRCADEPETRFYKCTKCGHTWRE 101
>gi|308500670|ref|XP_003112520.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
gi|308267088|gb|EFP11041.1| hypothetical protein CRE_30656 [Caenorhabditis remanei]
Length = 119
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 5 LGRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+ D FC CG +L + +CK V +R + V+ E E ++ +
Sbjct: 6 ISYDDDFCGCCGAILGLPPRAPATVTCKVCSTQWAVKER-VEQLVSRIEKVYERTVADTD 64
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ D E+ + V+ C KC + + YST QTRSADEGQT +Y C +C H+
Sbjct: 65 GIEND--ESADAVVEHICSKCGHTKAAYSTMQTRSADEGQTVFYTCLKCKHK 114
>gi|254585037|ref|XP_002498086.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
gi|238940980|emb|CAR29153.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
Length = 125
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI--SL 62
+FC CG +L ++ + + C C+ + ++ ++ + + L + S+
Sbjct: 7 LIFCLDCGDLLDNPSAVQGSEIECQQCQARYPKSKFSNLKVVTSTADDAFPSSLKMKQSV 66
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ G + + +K C KC + EM+Y T Q RSADEG T +Y C CG++
Sbjct: 67 VKTSIGRDDLGEGATIKEKCPKCGHDEMHYHTLQLRSADEGATVFYTCTSCGYK 120
>gi|257075578|ref|ZP_05569939.1| DNA-directed RNA polymerase subunit M [Ferroplasma acidarmanus
fer1]
Length = 101
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG ++ + +C+SC + AD++I + +EI I + ++ +
Sbjct: 1 MFCSKCGALMTPSRDKYICNSCGNEIPKAGTADQKIISKSSDKEI-----IMVAKEVNAE 55
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
++ C C + YY +QTRSADE +T +Y C CGHR +E
Sbjct: 56 PLDSDA-----VCPVCHHTGAYYLLKQTRSADEPETKFYTCESCGHRWRE 100
>gi|303390386|ref|XP_003073424.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon
intestinalis ATCC 50506]
gi|303302570|gb|ADM12064.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon
intestinalis ATCC 50506]
Length = 99
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 17/109 (15%)
Query: 10 LFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+FC CGT++ ++SN V C CK + +++ + T E++R+ I + E
Sbjct: 1 MFC-ICGTLIYIKSNSSKVECLRCKRENSIEMIKP-----VFTEIEVQRDSHIEVIE--- 51
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ +K+K C C EM Y+T Q RS DEGQT +Y C CG+R
Sbjct: 52 -----VEGAKIKHRCPGCGAEEMMYNTVQLRSTDEGQTVFYSC-ECGYR 94
>gi|448408551|ref|ZP_21574346.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
gi|445674406|gb|ELZ26950.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
Length = 107
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFK-KNVQDVADREISYA-VTAEEIKRELGISLFEQPQG 68
FC CG+M+ + + +VC SC D+AD+ +S A + EE+ + FE
Sbjct: 3 FCDDCGSMMHADGDEMVCKSCGATVGKDDDLADQFVSTAEQSGEEVVETEEGANFEGKPK 62
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DK C+ C N +Y+ +QT SADE T ++ C CGHR +E
Sbjct: 63 DKSVN--------CDDCGNGVAWYTIKQTGSADEPPTRFFKCTECGHRWRE 105
>gi|453081658|gb|EMF09707.1| hypothetical protein SEPMUDRAFT_16755, partial [Mycosphaerella
populorum SO2202]
Length = 118
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 9 FLFCKFCGTMLRMESN---HVVCSSCKF--KKNVQDVADREISYAVTAEEIKRELGISLF 63
+FC CG +L + ++ C C K V + ++ L +
Sbjct: 3 LVFCTDCGNLLHSNTGRKEYIACDVCGMQNKDTSSKVVITHSKPSAFPSALRTRLRSDVQ 62
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + D + + + CE+C +PE+ + +RQ RSADEG T +Y CP+C ++
Sbjct: 63 EVSESDMQDA--ATINLPCERCGHPEVKFYSRQLRSADEGSTIFYTCPKCAYK 113
>gi|401827442|ref|XP_003887813.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998820|gb|AFM98832.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 99
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 10 LFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+FC CGT++ ++SN V C CK + +V + T E++R+ + +
Sbjct: 1 MFC-ICGTLIYVKSNSTKVECPRCKRENSVDMIKPIH-----TEVEVQRDSHVEAID--- 51
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+K+K C C + EM Y+T Q RS DEGQT +Y C CGHR
Sbjct: 52 -----VSGAKIKHRCPACGSEEMMYNTAQLRSTDEGQTVFYSC-ECGHR 94
>gi|449550537|gb|EMD41501.1| hypothetical protein CERSUDRAFT_61506 [Ceriporiopsis subvermispora
B]
Length = 126
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 9 FLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + ++ V+C CK ++ + EI + L Q
Sbjct: 11 LLFCPECGTLLNLPEDNQHVVICEQCKHEEPASSYENIEIVTRSHPDAFPSALRQKTKTQ 70
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ L KV C +C + E Y Q RSADEG T +Y C +C
Sbjct: 71 TKVHDANEGLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTCVKC 118
>gi|402218920|gb|EJT98995.1| DNA-directed RNA polymerase polypeptide [Dacryopinax sp. DJM-731
SS1]
Length = 121
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 9 FLFCKFCGTMLRM--ESN--HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC CGT+L + E N +V C C++++ + E++ T E I L +
Sbjct: 5 LLFCPECGTLLSLPVEDNLKYVECEQCQYREPASSYENIEVTTVSTLESIPSPLRLKRTT 64
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGH 115
+ + G +K + C KC + E Y +Q RSADEG T Y C P C H
Sbjct: 65 RTRAHIGGDLDTKAQ--CPKCGHRESTYKEKQMRSADEGATLIYSCLNPECKH 115
>gi|348509155|ref|XP_003442117.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oreochromis niloticus]
Length = 108
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCMRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 55 ----GAAAWENVDSTPETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHR 105
>gi|448592642|ref|ZP_21651749.1| DNA-directed RNA polymerase subunit M2 [Haloferax elongans ATCC
BAA-1513]
gi|445731647|gb|ELZ83231.1| DNA-directed RNA polymerase subunit M2 [Haloferax elongans ATCC
BAA-1513]
Length = 109
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + C++ ADR+ A + + G L E +G
Sbjct: 3 FCDECGSMMVSQDGTMTCTN----DECGGTADRDEDLAEQFVSTEAQSGDELIETEEGAD 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C++C + E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVVCDECGHTEAWYTIKQTASADEPPTRFFKCQECGYRWRE 107
>gi|448491581|ref|ZP_21608421.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
gi|445692581|gb|ELZ44752.1| transcription factor TFIIS [Halorubrum californiensis DSM 19288]
Length = 106
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC SC + D D + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDSCGHEIGRDDGDDEWTTQSQVESEI---VDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
DKG L C +C N Y+ +Q R+ADE +T +++C C H+ +E
Sbjct: 56 DKG---LPTTTAQCPECDNDRAYWYMQQIRAADESETRFFVCTECEHKWRED 104
>gi|47220062|emb|CAG12210.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCMRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 55 ----GAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHR 105
>gi|448733443|ref|ZP_21715688.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
gi|445803177|gb|EMA53477.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
Length = 106
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + +VC+ C + V +R ++ T + ++ I E D
Sbjct: 3 FCDECGSMMHADGDEMVCADCG--ERVPKDGERAAAFVSTESQTTDDV-IETSE----DA 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + C+ C N +Y+ +QT SADE T ++ C CGHR
Sbjct: 56 ADEGKPTAEVECDDCGNDRAWYTIKQTGSADEPPTRFFKCTECGHR 101
>gi|303272895|ref|XP_003055809.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463783|gb|EEH61061.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 113
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLRMESN----------HVVCSSCKFKKNVQDVADREISYAVTAEEIKREL 58
FC C ML + +N ++C +C + +V ++ VT +E+ L
Sbjct: 2 LTFCPSCANMLLVTTNAAGADASPCLKLICQTCPYAYDVTKTLRDDVP--VTRKEVDDVL 59
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
G GD + K C KC + + Y+ Q RSADE +T++ C +CG++ +
Sbjct: 60 G--------GDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKCVKCGNQWR 111
Query: 119 E 119
E
Sbjct: 112 E 112
>gi|114051261|ref|NP_001040082.1| DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
gi|109893822|sp|Q2M2S7.1|RPC10_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|85057031|gb|AAI11668.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Bos
taurus]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + NV + V +R+ +E+ ELG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYP---KLKEVDDELG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTR ADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
>gi|229367102|gb|ACQ58531.1| DNA-directed RNA polymerase I subunit RPA12 [Anoplopoma fimbria]
Length = 118
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 5 LGRDFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
G D FC CG +L + + V C C F V + + +EI V +++ ++L
Sbjct: 4 FGGDPNFCSECGNVLPLPGLQDTVRCPRCSFCIPVAEFSGQEIRSTVIFNP-EKQSSVAL 62
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
++ + E + + R C +C M Y TRQ RSADEG+T ++ C C
Sbjct: 63 EDE---EGSELKGPVIDRRCSRCNKEGMVYHTRQMRSADEGRTVFFTCIHC 110
>gi|448314446|ref|ZP_21504142.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
gi|445595093|gb|ELY49212.1| transcription termination factor Tfs [Natronolimnobius
innermongolicus JCM 12255]
Length = 109
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + +VC+S + + DRE A E + + + ++ +
Sbjct: 3 FCDDCGSMMKAQGDRMVCTSDDCGASSE--RDREQEDAFVTTESQTDDDVIESDENANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C N E +Y+ +QT SADE T ++ C CG R
Sbjct: 61 GKPKATDV--VCDECGNQEAWYTLKQTASADEPPTRFFKCTECGKR 104
>gi|62751522|ref|NP_001015803.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|62858741|ref|NP_001016313.1| uncharacterized protein LOC549067 [Xenopus (Silurana) tropicalis]
gi|58477102|gb|AAH89759.1| polymerase (RNA) III (DNA directed) polypeptide K [Xenopus
(Silurana) tropicalis]
gi|89266864|emb|CAJ83854.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|213625552|gb|AAI70845.1| polr3k protein [Xenopus (Silurana) tropicalis]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + NV + V R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCYRFACNTCPYVHNVNRKVTSRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 55 ----GSAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHR 105
>gi|327266378|ref|XP_003217983.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Anolis carolinensis]
Length = 104
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 46/105 (43%), Gaps = 24/105 (22%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CGT+L + + V C C F +VQD + E+ + +K L
Sbjct: 14 FCPECGTVLPLPGLQDKVACRCCSFFIDVQDSTNLEVD---GGKAVKGPL---------- 60
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ R C +C M Y TRQ RSADEGQT +Y C C
Sbjct: 61 ---------IDRKCPQCGQEGMTYHTRQMRSADEGQTVFYTCIHC 96
>gi|223478880|ref|YP_002583424.1| transcription factor S [Thermococcus sp. AM4]
gi|214034106|gb|EEB74932.1| Transcription factor S [Thermococcus sp. AM4]
Length = 110
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + E + + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTRITQKVEHRPDEGIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CG+
Sbjct: 60 --DVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKCTKCGY 104
>gi|313126593|ref|YP_004036863.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448286744|ref|ZP_21477969.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292958|gb|ADQ67418.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445574121|gb|ELY28630.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + VC SC F+K +D A +E TA E+ + + + +
Sbjct: 3 FCDECGSMMKTDGGVWVCGSCGFEK-ARDAA-QESHMTSTASREDSEI-VDMSDVDDAEI 59
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T K C +C + Y +Q RSADE +T ++ C C H+ +E
Sbjct: 60 GPTTTVK----CPECGHDRARYEMKQIRSADESETRFFTCVECSHKWRE 104
>gi|426254133|ref|XP_004020739.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Ovis
aries]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + NV + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGPRCHRFACNTCPYVHNVTRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRWRD 108
>gi|345005203|ref|YP_004808056.1| transcription termination factor Tfs [halophilic archaeon DL31]
gi|344320829|gb|AEN05683.1| transcription termination factor Tfs [halophilic archaeon DL31]
Length = 107
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG M+ E + +VC+ C + AD E ++ T E + + G+ + ++ +
Sbjct: 3 FCDDCGAMMVAEGDRMVCTDCDASQPRD--ADAEEAFVSTTE--QDDAGLIVSDETAEYE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ S V CE+C + E +Y+ +QT +ADE T + C CG+ +E
Sbjct: 59 GKPTASDV--TCEECGHGEAWYNIKQTGAADEPPTRFLRCKECGYTWRE 105
>gi|50540172|ref|NP_001002553.1| DNA-directed RNA polymerase III subunit RPC10 [Danio rerio]
gi|49903001|gb|AAH76249.1| Polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQRCFRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGHRWRD 108
>gi|395326429|gb|EJF58839.1| DNA-directed RNA polymerase I kDa polypeptide [Dichomitus squalens
LYAD-421 SS1]
Length = 126
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKREL 58
AD +G LFC CGT+L + + V C C + + EI E L
Sbjct: 5 ADKIG-SLLFCPDCGTLLNLPQDGEFEVTCEQCGHVEPASSYENIEIVTRSHPEAFPSAL 63
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
Q + L KV C +C + E Y Q RSADEG T +Y C RC
Sbjct: 64 RQKRKTQTKVHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTCVRC 118
>gi|225709336|gb|ACO10514.1| DNA-directed RNA polymerase I subunit RPA12 [Caligus rogercresseyi]
Length = 120
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 8 DFLFCKFCGTMLR--MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + C +C + +V D+EI+Y + E + + + +
Sbjct: 9 DPSFCSDCGSILPDVPSRGPLHCVACGSEADVSQFLDKEITYTI---EFNKREDLDVARR 65
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D ++ + V+R C C +M Y+ Q RSADEGQT ++ C +C +
Sbjct: 66 VNEDNSSSEPT-VERTCPNCGYSKMSYAALQLRSADEGQTVFFTCLKCKFK 115
>gi|403213967|emb|CCK68468.1| hypothetical protein KNAG_0B00190 [Kazachstania naganishii CBS
8797]
Length = 125
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEE-----IKRELG 59
+FC CG +L S + + C+ C+ + D ++ ++ TAE+ ++ +
Sbjct: 7 LIFCFDCGNLLDNPSTGHGDSIECAQCQARYPKADFSNLKV-VTTTAEDAFPSALRSKKS 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + + GE + +K C +C N EM Y T Q RSADEG T +Y C CG++
Sbjct: 66 VVKTQLKKDELGEG--ATIKEKCPQCGNDEMQYHTLQLRSADEGATVFYTCTSCGYK 120
>gi|355712780|gb|AES04463.1| polymerase III polypeptide K, 12.3 kDa [Mustela putorius furo]
Length = 113
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 18/120 (15%)
Query: 4 PLGRDFLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKREL 58
P LFC CG L +E + C++C + N+ + V +R+ +E+ L
Sbjct: 3 PGAAMLLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVL 59
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G G + C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 60 G--------GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHR 111
>gi|348585383|ref|XP_003478451.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cavia porcellus]
gi|351711232|gb|EHB14151.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 108
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GSAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|257051319|ref|YP_003129152.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
gi|256690082|gb|ACV10419.1| transcription termination factor Tfs [Halorhabdus utahensis DSM
12940]
Length = 106
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + VC SC + ++ A +E + +S E
Sbjct: 3 FCDECGSMMKTEGDMWVCGSCG-AETPREAATESGMVTTQGQEAGEVVDLSDSEADARPT 61
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E Q C +C N Y+ +Q R+ADE +T ++ C CGH+ +E
Sbjct: 62 TEIQ-------CVECDNDRAYWELKQIRAADESETRFFTCTECGHKWRE 103
>gi|345802468|ref|XP_854405.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Canis
lupus familiaris]
gi|410985427|ref|XP_003999024.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Felis
catus]
gi|4877775|gb|AAD31424.1|AF126531_1 putative DNA-directed RNA polymerase III C11 subunit [Homo sapiens]
gi|6580760|gb|AAF18268.1|AF051316_1 RNA polymerase III subunit [Homo sapiens]
gi|12001960|gb|AAG43123.1|AF060223_1 My010 protein [Homo sapiens]
gi|15080355|gb|AAH11932.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|90653002|gb|ABD95903.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Homo
sapiens]
gi|119606285|gb|EAW85879.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|123999444|gb|ABM87280.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|157929168|gb|ABW03869.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|306921315|dbj|BAJ17737.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
Length = 108
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + +C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|296473638|tpg|DAA15753.1| TPA: DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
Length = 108
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + NV + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|76800836|ref|YP_325844.1| DNA-directed RNA polymerase subunit M 1 [Natronomonas pharaonis DSM
2160]
gi|76556701|emb|CAI48273.1| transcription elongation factor TFS [Natronomonas pharaonis DSM
2160]
Length = 108
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKF-KKNVQDVADREISYAVTAEEIKRELG-ISLFEQPQG 68
FC CG+M+ E VC SC F K+ D ADR T E + G + + E
Sbjct: 3 FCDECGSMMHSEDGLWVCRSCGFEKQQGDDDADR----MTTTEGQDTDSGPVDMSEVDDS 58
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ G T + C +C N Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 EIGPT----TRVNCPECGNDRARYEMKQIRAADESETRFFTCTECEHKWRED 106
>gi|195391074|ref|XP_002054188.1| GJ24301 [Drosophila virilis]
gi|194152274|gb|EDW67708.1| GJ24301 [Drosophila virilis]
Length = 121
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V C +CK F +V E + + + + +S
Sbjct: 10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYSGETSEYTIHFNSYDPSK---LSKKGNR 66
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ D E V+R C KC N +M Y+T Q RSADEGQT ++ C +C ++ E+
Sbjct: 67 ETDTAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESEN 120
>gi|148237221|ref|NP_001083658.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus laevis]
gi|38511445|gb|AAH61683.1| MGC68582 protein [Xenopus laevis]
Length = 108
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCYRFACNTCPYVHNINRKVTSRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC +P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GSAAWENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGHRWRD 108
>gi|354500619|ref|XP_003512396.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cricetulus griseus]
gi|344254447|gb|EGW10551.1| DNA-directed RNA polymerase III subunit RPC10 [Cricetulus griseus]
Length = 108
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPSCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|170048120|ref|XP_001851544.1| RpI12 [Culex quinquefasciatus]
gi|167870300|gb|EDS33683.1| RpI12 [Culex quinquefasciatus]
Length = 129
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 11 FCKFCGT---MLRMESNHVVCSSCKFKKNVQDVADREISYAV---TAEEIKRELG---IS 61
FC CG+ +LRM N V C +C + E+ Y V + E K +
Sbjct: 11 FCPDCGSILPLLRMSGN-VTCYNCHNSYSEAVFGTMEVEYTVHFNSYENKKSDRARQGKR 69
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GD E + V R C KC N +M Y+T Q RSADEGQT ++ C +C
Sbjct: 70 RKAGGGGDDDEAEGPIVSRKCPKCGNDKMSYATLQLRSADEGQTVFFTCTKC 121
>gi|19075559|ref|NP_588059.1| DNA-directed RNA polymerase complex I subunit Rpa12
[Schizosaccharomyces pombe 972h-]
gi|9297043|sp|O94703.1|RPA12_SCHPO RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=DNA-directed RNA polymerase I 13.1 kDa polypeptide
gi|8886803|gb|AAF80580.1|AF219943_1 RNA polymerase I specific subunit Rpa12 [Schizosaccharomyces pombe]
gi|4049536|emb|CAA22541.1| DNA-directed RNA polymerase complex I subunit Rpa12
[Schizosaccharomyces pombe]
gi|6518899|dbj|BAA87928.1| RPA12 [Schizosaccharomyces pombe]
gi|6519808|dbj|BAA87930.1| SpRPA12 [Schizosaccharomyces pombe]
Length = 119
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 8 DFLFCKFCGTMLR-MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
+FC CG +L + C C+ + A+ + +A L +
Sbjct: 6 SLIFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLK-HSIV 64
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q + + + + ++ C KC N M + T Q RSADEG T +Y CPRC ++
Sbjct: 65 QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYK 114
>gi|225557920|gb|EEH06205.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|240273969|gb|EER37487.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325095646|gb|EGC48956.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 81
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+++ C+KC + E+ +S Q RSADEG T +Y CP+CGHR Q++
Sbjct: 37 RIQVDCQKCDSKEVTWSEMQLRSADEGSTIFYRCPKCGHRWQDN 80
>gi|429190974|ref|YP_007176652.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|448327460|ref|ZP_21516788.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
gi|429135192|gb|AFZ72203.1| transcription factor S, archaeal [Natronobacterium gregoryi SP2]
gi|445608558|gb|ELY62397.1| transcription termination factor Tfs [Natronobacterium gregoryi
SP2]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGRWECGSCGYTEPKGD-ADQ---YVVTDSQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q R+ADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDAHCPECGHDRAYWYMQQIRAADESETRFFICSECEHKWRE 99
>gi|448500134|ref|ZP_21611613.1| transcription termination factor Tfs [Halorubrum coriense DSM
10284]
gi|445696856|gb|ELZ48935.1| transcription termination factor Tfs [Halorubrum coriense DSM
10284]
Length = 109
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + +R+ + A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGATTERDEALAAEFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CG R
Sbjct: 59 FEGKPTATDVVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGRR 104
>gi|301769553|ref|XP_002920195.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Ailuropoda melanoleuca]
gi|281341538|gb|EFB17122.1| hypothetical protein PANDA_008903 [Ailuropoda melanoleuca]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRWRD 108
>gi|13385394|ref|NP_080177.1| DNA-directed RNA polymerase III subunit RPC10 [Mus musculus]
gi|62079253|ref|NP_001014281.1| DNA-directed RNA polymerase III subunit RPC10 [Rattus norvegicus]
gi|281183128|ref|NP_001162283.1| DNA-directed RNA polymerase III subunit RPC10 [Papio anubis]
gi|114660088|ref|XP_001150299.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
troglodytes]
gi|126335251|ref|XP_001364724.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Monodelphis domestica]
gi|296219167|ref|XP_002755763.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Callithrix jacchus]
gi|311251657|ref|XP_003124725.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Sus
scrofa]
gi|332239931|ref|XP_003269145.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Nomascus
leucogenys]
gi|395515580|ref|XP_003761979.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Sarcophilus harrisii]
gi|397476074|ref|XP_003809436.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
paniscus]
gi|426380499|ref|XP_004056900.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Gorilla gorilla gorilla]
gi|46397018|sp|Q9CQZ7.1|RPC10_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|12836878|dbj|BAB23846.1| unnamed protein product [Mus musculus]
gi|12846620|dbj|BAB27239.1| unnamed protein product [Mus musculus]
gi|26327027|dbj|BAC27257.1| unnamed protein product [Mus musculus]
gi|58477408|gb|AAH89990.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus
norvegicus]
gi|148675519|gb|EDL07466.1| polymerase (RNA) III (DNA directed) polypeptide K [Mus musculus]
gi|149033881|gb|EDL88664.1| rCG38533 [Rattus norvegicus]
gi|160904110|gb|ABX52097.1| polymerase III polypeptide K, 12.3 kDa (predicted) [Papio anubis]
gi|167427355|gb|ABZ80330.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callithrix jacchus]
gi|169246090|gb|ACA51066.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callicebus moloch]
gi|183396438|gb|ACC62113.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Rhinolophus ferrumequinum]
gi|380788615|gb|AFE66183.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|383411311|gb|AFH28869.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|384943952|gb|AFI35581.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|410220334|gb|JAA07386.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410265268|gb|JAA20600.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410290868|gb|JAA24034.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410350475|gb|JAA41841.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|417395769|gb|JAA44927.1| Putative dna-directed rna polymerase iii subunit rpc10 [Desmodus
rotundus]
gi|431906774|gb|ELK10895.1| DNA-directed RNA polymerase III subunit RPC10 [Pteropus alecto]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|448583401|ref|ZP_21646757.1| DNA-directed RNA polymerase subunit M2 [Haloferax gibbonsii ATCC
33959]
gi|445729630|gb|ELZ81225.1| DNA-directed RNA polymerase subunit M2 [Haloferax gibbonsii ATCC
33959]
Length = 109
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ E+ + C++ + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVSENGAMTCTN----DDCGGTAERDEELAAEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDDCGHTKAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|395835629|ref|XP_003790779.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCYRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|76803099|ref|YP_331194.1| DNA-directed RNA polymerase subunit M 2 [Natronomonas pharaonis DSM
2160]
gi|76558964|emb|CAI50560.1| transcription elongation factor TFS [Natronomonas pharaonis DSM
2160]
Length = 107
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLFE-QPQ 67
FC CG+M+ + +VCSSC +K+ A+ + A T +++ + FE +P
Sbjct: 3 FCDDCGSMMHAQGEAMVCSSCGATTEKDEAKAAEFVSTDAQTDDDVIESSPDADFEGKPT 62
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D C++C + E +Y+ +QT +ADE T ++ C CGHR
Sbjct: 63 ADD---------IICDECGHGEAWYTIKQTGAADEPPTRFFKCKECGHR 102
>gi|448715566|ref|ZP_21702424.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
gi|445787810|gb|EMA38547.1| transcription termination factor Tfs [Halobiforma nitratireducens
JCM 10879]
Length = 102
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + C SC + + D AD+ Y VT + E+ S
Sbjct: 3 FCDECGSMMKADDGLWECGSCGYTEPKGD-ADQ---YVVTDSQEASEIIES--------S 50
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C +C + Y+ +Q R+ADE +T ++IC C H+ +E
Sbjct: 51 EETSLPETDANCPECGHDRAYWYMQQIRAADESETRFFICSECEHKWRE 99
>gi|301604476|ref|XP_002931883.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Xenopus
(Silurana) tropicalis]
Length = 122
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 6/105 (5%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + V C C + +V + + + +V ++ I L + +
Sbjct: 14 FCSDCGSVLPPPGIQDTVTCLRCSHRTHVTEFLGKCVQTSVVFNKLDT---IKLSNETE- 69
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ GE + + R C +C M Y TRQ RSADEGQT +Y C +C
Sbjct: 70 EAGELKGPLIDRRCSRCGFERMAYHTRQMRSADEGQTVFYTCVKC 114
>gi|260942901|ref|XP_002615749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851039|gb|EEQ40503.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 123
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTMLRMESN---------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
+FC CG +L + H S +F N++ V ++ ++KR +
Sbjct: 7 LIFCNDCGNLLDSVTAKPTLDCGVCHRSYQSSQFA-NLKVVTKSSEDAFPSSLKLKRSVV 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + ++G T +K C KC N EM Y T Q RSADEG T +Y C CG+R
Sbjct: 66 KTSLKNDELEEGAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTGCGYR 118
>gi|448473373|ref|ZP_21601515.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
gi|445818885|gb|EMA68734.1| transcription factor TFIIS [Halorubrum aidingense JCM 13560]
Length = 106
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 12/111 (10%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+M++ +H VC SC + ++ + + EI + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCDSCGHEIGREENDAEWTTESQVESEI---IDVSDAE---- 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DKG L K C +C N + Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 56 DKG---LPKTTAHCPECGNDQAYWYMQQIRSADESETRFFVCTECEHKWRE 103
>gi|254167896|ref|ZP_04874745.1| transcription factor S [Aciduliprofundum boonei T469]
gi|254167927|ref|ZP_04874776.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623187|gb|EDY35753.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623218|gb|EDY35784.1| transcription factor S [Aciduliprofundum boonei T469]
Length = 94
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 10/94 (10%)
Query: 27 VCSSCKFKKNVQDVADREISYAVTAEEIKREL-GISLFEQPQGDKGETQLSKVKRACEKC 85
VCSSC ++ + D++ S + AE ++E+ IS E+ + + + C KC
Sbjct: 9 VCSSCGYEMPI----DKDKSQEIVAEAKEKEMIVISSEEELKALPYDESV-----ICPKC 59
Query: 86 QNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ ++ +QTR+ADE +T +YICP+CGHR +E
Sbjct: 60 GHAGAHWMLQQTRAADEPETRFYICPKCGHRWRE 93
>gi|74217136|dbj|BAC40210.2| unnamed protein product [Mus musculus]
Length = 107
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 1 MLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 53
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 54 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 104
>gi|302058278|ref|NP_057394.2| DNA-directed RNA polymerase III subunit RPC10 [Homo sapiens]
gi|116242768|sp|Q9Y2Y1.2|RPC10_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III 12.5 kDa subunit; Short=RPC12.5;
AltName: Full=RNA polymerase III subunit C11;
Short=HsC11p; Short=RPC11; Short=hRPC11
gi|14336676|gb|AAK61210.1|AE006462_2 RNA polymerase III subunit CII [Homo sapiens]
gi|66350794|emb|CAI95605.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
Length = 108
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + +C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|6322523|ref|NP_012597.1| Rpa12p [Saccharomyces cerevisiae S288c]
gi|417695|sp|P32529.1|RPA12_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA12; AltName:
Full=A12; AltName: Full=A12.2; AltName:
Full=DNA-directed RNA polymerase I 13.7 kDa polypeptide
gi|172462|gb|AAA34992.1| RNA polymerase I subunit A12.2 [Saccharomyces cerevisiae]
gi|531231|gb|AAB59319.1| RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae]
gi|1015737|emb|CAA89591.1| RPA12 [Saccharomyces cerevisiae]
gi|1019685|gb|AAB39289.1| ORF YJR063w [Saccharomyces cerevisiae]
gi|45270516|gb|AAS56639.1| YJR063W [Saccharomyces cerevisiae]
gi|151945131|gb|EDN63382.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|190409539|gb|EDV12804.1| RNA polymerase I A12.2 subunit [Saccharomyces cerevisiae RM11-1a]
gi|256273126|gb|EEU08081.1| Rpa12p [Saccharomyces cerevisiae JAY291]
gi|259147526|emb|CAY80777.1| Rpa12p [Saccharomyces cerevisiae EC1118]
gi|285812952|tpg|DAA08850.1| TPA: Rpa12p [Saccharomyces cerevisiae S288c]
gi|323304255|gb|EGA58029.1| Rpa12p [Saccharomyces cerevisiae FostersB]
gi|323308470|gb|EGA61715.1| Rpa12p [Saccharomyces cerevisiae FostersO]
gi|323332869|gb|EGA74272.1| Rpa12p [Saccharomyces cerevisiae AWRI796]
gi|323336953|gb|EGA78210.1| Rpa12p [Saccharomyces cerevisiae Vin13]
gi|323347867|gb|EGA82128.1| Rpa12p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354256|gb|EGA86099.1| Rpa12p [Saccharomyces cerevisiae VL3]
gi|349579248|dbj|GAA24411.1| K7_Rpa12p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764719|gb|EHN06240.1| Rpa12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298489|gb|EIW09586.1| Rpa12p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 125
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKF---------KKNVQDVADREISYAVTAEEIK 55
+FC CG +L + ++V CS CK K V AD ++ A++
Sbjct: 7 LIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSV 66
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + E G + +K C +C N EM Y T Q RSADEG T +Y C CG+
Sbjct: 67 VKTSLKKNELKDG-------ATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119
Query: 116 R 116
+
Sbjct: 120 K 120
>gi|124800991|ref|XP_001349576.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|3845145|gb|AAC71847.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 106
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + + C SC +K +++ +I ++ + + +
Sbjct: 3 FFCPNCHNIVLVHIEKGVYFYCKSCNYKYKIKN----KIYNKFDCQQFNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC N E Y+ T Q RSADE T +YIC +C + +E
Sbjct: 54 AVDINNKNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106
>gi|225717070|gb|ACO14381.1| DNA-directed RNA polymerase III subunit RPC10 [Esox lucius]
Length = 108
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCYRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C CGHR ++
Sbjct: 55 ----GAAAWENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGHRWRD 108
>gi|225712014|gb|ACO11853.1| DNA-directed RNA polymerase III subunit RPC10 [Lepeophtheirus
salmonis]
Length = 108
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESN------HVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGIS 61
+FC CG +L + C +C +K+NV ++DR +E+ LG
Sbjct: 2 LMFCPNCGNILGVVEGVTDSCMRFACETCPYKRNVVSRLSDRVYP---KLKEVDDVLG-- 56
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + C C + Y+ QTRSADE TT+Y C CGHR +E
Sbjct: 57 ------GSAAWENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKCVSCGHRWRE 108
>gi|307110179|gb|EFN58415.1| hypothetical protein CHLNCDRAFT_140360 [Chlorella variabilis]
Length = 146
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESNHVVCSS--CKFKKNVQDVADREISYAVTAEEI-KREL 58
D + + + FC G +L +++ V S F + + D+ D + ++ R+
Sbjct: 16 GDVIAKTWAFCPITGDLLILDAAAGVARSERADFSRPLSDLDDTMTVVTTSDMDVYMRQY 75
Query: 59 GI-SLFEQPQGDKGETQL-----SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
+ L + + + E L + V+ C +C NP + Y T Q RSADEGQT +Y CP+
Sbjct: 76 AMEPLIKSREQLEFEELLKNRVRATVEEPCPRCGNPILEYYTMQLRSADEGQTVFYECPK 135
Query: 113 --CGHR 116
CG+R
Sbjct: 136 RDCGYR 141
>gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodium knowlesi strain H]
gi|193807800|emb|CAQ38505.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 106
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + + V C +C FK +++ +I ++ + + +
Sbjct: 3 FFCPNCHNIVLVNIENGVYFYCKTCNFKYKIKN----KIFNKFDCRDLNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC + E Y+ + Q RSADE T +YIC +C H +E
Sbjct: 54 AVDMNNKNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYICIKCNHHWKE 106
>gi|402584912|gb|EJW78853.1| hypothetical protein WUBG_10238, partial [Wuchereria bancrofti]
Length = 65
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
++G + V + C+KC + +M Y+ RQTRSADEGQT +Y+C +C + E+
Sbjct: 11 NANEGALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKCNYNVMEN 64
>gi|428169563|gb|EKX38496.1| DNA-directed RNA polymerase I subunit, RPA12 [Guillardia theta
CCMP2712]
Length = 92
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%)
Query: 76 SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ V+ C KC N E YST Q RSADEGQT +Y C +CGH
Sbjct: 47 ATVEENCPKCNNHEAKYSTLQMRSADEGQTIFYECTKCGH 86
>gi|156093906|ref|XP_001612991.1| transcription factor [Plasmodium vivax Sal-1]
gi|148801865|gb|EDL43264.1| transcription factor, putative [Plasmodium vivax]
Length = 106
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + + V C +C FK +++ +I +E + + +
Sbjct: 3 FFCPNCHNIVLVHVENGVYFYCKTCNFKYKIRN----KIFNKFDCKEYNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC + E Y+ + Q RSADE T +YIC +C H +E
Sbjct: 54 AVDVNNKNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYICVKCNHHWKE 106
>gi|367007557|ref|XP_003688508.1| hypothetical protein TPHA_0O01050 [Tetrapisispora phaffii CBS 4417]
gi|357526817|emb|CCE66074.1| hypothetical protein TPHA_0O01050 [Tetrapisispora phaffii CBS 4417]
Length = 125
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 51/121 (42%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLRMESNHV-------VCSSCKFK------KNVQDVADREISYAVTAEEIK 55
+FC CG +L + V C C K K V AD A+ +++
Sbjct: 7 LIFCLECGNLLGNPNEAVGSQLECSQCQKCYLKSEFTNLKVVTTTADDAFPSALRSKKSV 66
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + E G + +K C KC N EM Y T Q RSADEG T +Y CP C +
Sbjct: 67 VKTSLKKNELKDG-------ATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPSCNY 119
Query: 116 R 116
+
Sbjct: 120 K 120
>gi|113195665|ref|NP_001037832.1| polymerase (RNA) III (DNA directed) polypeptide K [Ciona
intestinalis]
gi|198420477|ref|XP_002119150.1| PREDICTED: hypothetical protein [Ciona intestinalis]
gi|92081584|dbj|BAE93339.1| RNA polymerase [Ciona intestinalis]
Length = 108
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E + C +C + N+ Q ++ ++ +++ LG
Sbjct: 2 LLFCPTCGNLLTVEEGNQCYRFACPTCPYVHNITQKISSKKFPKLKAVDDV---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + C KC++ Y+ QTRSADE T +Y C P CGH+ +E
Sbjct: 55 ----GSAAWENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGHQWRE 108
>gi|156548360|ref|XP_001603724.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like
[Nasonia vitripennis]
Length = 125
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L + + V C +CK + + ++Y V + + +Q
Sbjct: 16 FCPDCGSILPLLGDRGGVTCYACKRVWGPEVFGEMAMTYTV---NFNNKDTYASAKQDDD 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D+ E V R C +C N +M Y+T Q RSADEGQT +Y C +C
Sbjct: 73 DEEEADGPIVDRRCPQCNNDKMSYATLQLRSADEGQTVFYTCTKC 117
>gi|226822864|gb|ACO83096.1| DNA directed RNA polymerase III polypeptide K (predicted) [Dasypus
novemcinctus]
Length = 108
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTSRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|344292282|ref|XP_003417857.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Loxodonta africana]
Length = 108
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAELCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNVQCGHRWRD 108
>gi|448459682|ref|ZP_21596732.1| transcription termination factor Tfs [Halorubrum lipolyticum DSM
21995]
gi|445808134|gb|EMA58208.1| transcription termination factor Tfs [Halorubrum lipolyticum DSM
21995]
Length = 109
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ +VC + + +R+ + A E + G + E +G
Sbjct: 3 FCDDCGSMMVSRDGEMVCQN----DDCGATTERDEALAAEFESTTEQTGDEVIETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + C++C + E +Y+ +QT +ADE T ++ C CG R
Sbjct: 59 FEGKPTANDVVCDECGHGEAWYTIKQTGAADEPPTRFFKCKECGRR 104
>gi|432868046|ref|XP_004071384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oryzias latipes]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISY--AVTAEEIKRELGISL 62
LFC CG +L +E C++C + NV R+++Y +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCLRFACNTCPYVHNVT----RKVNYRKYPKLKEVDDVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + C KC++P Y+ QTRSADE TT+Y C +CG+R
Sbjct: 55 -----GAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGNR 105
>gi|156843211|ref|XP_001644674.1| hypothetical protein Kpol_1056p17 [Vanderwaltozyma polyspora DSM
70294]
gi|156115322|gb|EDO16816.1| hypothetical protein Kpol_1056p17 [Vanderwaltozyma polyspora DSM
70294]
Length = 125
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 16/119 (13%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSC-------KFKKNVQDVADREISYAVTAEEIKRE 57
+FC CG +L S + + CS C KF + E ++ + K
Sbjct: 7 LIFCLDCGDLLDNPSAVTGSDLECSQCQATYPKSKFSNLKVVTSTAEDAFPSSLRSKKSV 66
Query: 58 LGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ SL + D G T +K C KC N EM Y T Q RSADEG T +Y CP C ++
Sbjct: 67 VKTSLKKDELKD-GAT----IKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPACSYK 120
>gi|15669335|ref|NP_248140.1| transcription-associated protein TFIIS [Methanocaldococcus
jannaschii DSM 2661]
gi|3024570|sp|Q58548.1|RPOM_METJA RecName: Full=DNA-directed RNA polymerase subunit M
gi|1591780|gb|AAB99148.1| transcription-associated protein ('TFIIS') [Methanocaldococcus
jannaschii DSM 2661]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C+ C +++ +E Y E K ++ + E
Sbjct: 4 FCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESE------ 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L + C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 58 GLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>gi|254568716|ref|XP_002491468.1| RNA polymerase I subunit A12.2 [Komagataella pastoris GS115]
gi|238031265|emb|CAY69188.1| RNA polymerase I subunit A12.2 [Komagataella pastoris GS115]
gi|328352022|emb|CCA38421.1| DNA-directed RNA polymerase I subunit A12 [Komagataella pastoris
CBS 7435]
Length = 123
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRMESNH--VVCSSC------KFKKNVQDVADREISYAVTAEEIKRELGI 60
+FC CG +L + + C+ C K KN+ V + K L
Sbjct: 7 MIFCVECGNLLDSVAGQKSIDCNVCERSYDTKRFKNLSVVTKSSPDAFPSTLRAKASLVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + + G T +K C +C N EM Y T Q RSADEG T +Y CP+C ++
Sbjct: 67 TSLKSDELEDGAT----IKEKCPQCGNEEMQYHTLQLRSADEGATVFYTCPKCAYK 118
>gi|305662838|ref|YP_003859126.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
gi|304377407|gb|ADM27246.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
Length = 112
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 9 FLFCKFCGTMLRMESNHVV--CSSCKFK----KNVQDVADREISYAVTAEEIKRELGISL 62
+FC C +++ +S V CS C ++ N + + R I + + + E G S+
Sbjct: 1 MMFCPKCRSLMSFDSKRRVYRCSRCGYEVIPNNNSRAIVSRTIEHKEKEKLVVIE-GTSV 59
Query: 63 FEQPQGD--KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P KG T+ C KC + E+Y QTR+ADE TT+Y CP CGH +E
Sbjct: 60 SVPPNAVLVKGHTR-------CPKCGSEEVYAWQMQTRAADEPPTTFYKCPSCGHTWRE 111
>gi|195112999|ref|XP_002001059.1| GI22183 [Drosophila mojavensis]
gi|193917653|gb|EDW16520.1| GI22183 [Drosophila mojavensis]
Length = 121
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V C +CK F +V E + + + ++ IS
Sbjct: 10 FCPSCGSILPPLQVKGNVFCYNCKQEFSPDVYIGETSEYTIHFNSFDPRK---ISKKVTQ 66
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ + E V+R C KC N +M Y+T Q RSADEGQT ++ C +C ++ E+
Sbjct: 67 KSEAAEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYKESEN 120
>gi|315230104|ref|YP_004070540.1| transcription factor [Thermococcus barophilus MP]
gi|315183132|gb|ADT83317.1| transcription factor [Thermococcus barophilus MP]
Length = 109
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG+++ + VC C +++ + A + +Y +T + + I + EQ
Sbjct: 4 FCPKCGSIMLPDRKREVFVCRKCGYEEPLNPEAAK--AYRLTQKVEHKVEDIPIIEQ--- 58
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L KVK C KC N E Y+ QTR+ DE T +Y C +CG+
Sbjct: 59 --DLATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGY 103
>gi|156084192|ref|XP_001609579.1| transcription factor S-II protein [Babesia bovis T2Bo]
gi|154796831|gb|EDO06011.1| transcription factor S-II protein, putative [Babesia bovis]
Length = 109
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 13/115 (11%)
Query: 10 LFCKFCGTMLRMESNH-----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C ++L N C C ++ + + Y +EI R
Sbjct: 3 LFCPLCHSVLFFSCNPPQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPR-------- 54
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P K+ C C N E Y+ + QTRSADE T +++C C HR +E
Sbjct: 55 SPHSVNEFEHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109
>gi|448569001|ref|ZP_21638413.1| DNA-directed RNA polymerase subunit M2 [Haloferax lucentense DSM
14919]
gi|445725151|gb|ELZ76776.1| DNA-directed RNA polymerase subunit M2 [Haloferax lucentense DSM
14919]
Length = 109
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVSQNGAMTCTN----DDCGGTAERDEELAAEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C++C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDECGHTKAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|84490311|ref|YP_448543.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
gi|84373630|gb|ABC57900.1| RpoM1 [Methanosphaera stadtmanae DSM 3091]
Length = 105
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG +L + C +C ++K V + + ++ Y V AE++ +E + + D
Sbjct: 3 FCPECGKVLFPKDGKFTCDACGYEKGVTEESKKQ--YEV-AEKVDKEDTVIV-----TDG 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L +K C KC N ++ +QTRSADE +T ++ C C + +E
Sbjct: 55 NVKTLPTIKVICPKCGNKLAFWWLQQTRSADESETRFFRCTECDYTWRE 103
>gi|392572001|gb|EIW65173.1| DNA-directed RNA polymerase I kDa polypeptide [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKREL 58
AD +G LFC CGT+L + + V C C + + EI + L
Sbjct: 5 ADKIG-SLLFCPDCGTLLNLPQDGQFQVTCEQCAHVEPASSYENIEIITKSHPDAFPSAL 63
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
Q + L KV C +C + E Y Q RSADEG T +Y C +C
Sbjct: 64 RQKRKTQTKEHAANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTCVKC 118
>gi|300712134|ref|YP_003737948.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|448295824|ref|ZP_21485887.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|299125817|gb|ADJ16156.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|445583253|gb|ELY37585.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
Length = 103
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + VC C ++ D A SY T + + E+ S E
Sbjct: 3 FCDECGSMMMAQDEVWVCKGCGHEQPKGDSA----SYTTTDAQEESEVIESGAEN----- 53
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ L C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 54 --SGLPTTSAQCPECDNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 100
>gi|365759903|gb|EHN01663.1| Rpa12p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837644|gb|EJT41547.1| RPA12-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 125
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKF---------KKNVQDVADREISYAVTAEEIK 55
+FC CG +L S ++V C+ CK K + AD ++ A++
Sbjct: 7 LIFCLDCGDLLENPSAVLGSNVECNQCKAIYPKSQFSNLKVITTTADDAFPSSLRAKKSV 66
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + E G + +K C +C N EM Y T Q RSADEG T +Y C CG+
Sbjct: 67 VKTSLKKNELKDG-------ATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119
Query: 116 R 116
+
Sbjct: 120 K 120
>gi|452822187|gb|EME29209.1| DNA-directed RNA polymerase I subunit A12 [Galdieria sulphuraria]
Length = 156
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 11 FCKFCGTMLRMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC +CG +L + ++ V C CK + E R L E+ Q
Sbjct: 43 FCNYCGGLLLVSNDGKVGFCRVCKKTSESYSKGGERQFRPLKPSEFLRTLSAMKEEENQT 102
Query: 69 -DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + VK C +C + + + T Q RSADEGQT +Y CP+C ++
Sbjct: 103 VTASENNQATVKETCPQCGHDTLLFRTAQLRSADEGQTIFYTCPKCRYK 151
>gi|322369052|ref|ZP_08043619.1| DNA-directed RNA polymerase subunit M2 [Haladaptatus
paucihalophilus DX253]
gi|320551783|gb|EFW93430.1| DNA-directed RNA polymerase subunit M2 [Haladaptatus
paucihalophilus DX253]
Length = 109
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+R + +VC++ + V +R + T + ++ E +G
Sbjct: 3 FCDECGSMMRSMGSKMVCTNDDCQATVAKDEERAAEFVSTEAQDDSDV----IETEEGAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + CE+C + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTANDVTCEECGHGVAWYTIKQTGSADEPPTRFFKCKECGYRWRE 107
>gi|405121978|gb|AFR96746.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
grubii H99]
Length = 118
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRMESNH------VVCSSCKFKKNVQDVADREISY--AVTAEEIKRELGI 60
LFC +C L + VC +C + Q + +R+IS + +E+ LG
Sbjct: 1 MLFCPYCANSLTIGDREDSTDKCWVCPTCPY----QFIIERQISMRTHLKRKEVDDVLG- 55
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K AC KC + Y+ Q RSADE TT+Y C CGH+ +E
Sbjct: 56 -------GKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 107
>gi|409095443|ref|ZP_11215467.1| transcription elongation factor S (TFS_arch) [Thermococcus zilligii
AN1]
Length = 110
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC C ++ ++ DRE + E K I + EQ
Sbjct: 3 FCPKCGNLMLPDRRRKVWVCRVCGHEEPFEEEKDREKTRITQKVEHKPNEEIVVIEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C RCGH
Sbjct: 60 --DVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYRCTRCGH 104
>gi|292656751|ref|YP_003536648.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|448290754|ref|ZP_21481900.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|448565449|ref|ZP_21636316.1| DNA-directed RNA polymerase subunit M2 [Haloferax prahovense DSM
18310]
gi|291372919|gb|ADE05146.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|445578125|gb|ELY32540.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|445715193|gb|ELZ66949.1| DNA-directed RNA polymerase subunit M2 [Haloferax prahovense DSM
18310]
Length = 109
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVSQNGAMTCTN----DDCGGTAERDEELAAEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDDCGHTKAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|399574716|ref|ZP_10768475.1| hypothetical protein HSB1_05140 [Halogranum salarium B-1]
gi|399240548|gb|EJN61473.1| hypothetical protein HSB1_05140 [Halogranum salarium B-1]
Length = 97
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M++ + VC SC F+K ++D + +E + +S E DKG L
Sbjct: 1 MMKTNDDKWVCGSCGFEK-LRDSSKEAQMVTTQGQEQSEIVDVSDAE----DKG---LPT 52
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K C KC N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 53 TKVHCPKCGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 94
>gi|161529264|ref|YP_001583090.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
gi|160340565|gb|ABX13652.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
Length = 105
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ ++ + CS C + + ++ ++ T E ++E I FE G++
Sbjct: 3 FCPKCEVKLKKGTSGLECSKCGYTEGAEEKQTKK-----TVETEEQEESILAFE---GNE 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GE +K CEKC + E + QTRSADE T +Y C +C
Sbjct: 55 GEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRCTKC 97
>gi|452208385|ref|YP_007488507.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
gi|452084485|emb|CCQ37832.1| transcription elongation factor TFS [Natronomonas moolapensis
8.8.11]
Length = 108
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + VC SC F+K AD E T + + + E +
Sbjct: 3 FCDECGSMMHSQEGVWVCGSCGFEKARD--ADSEADMVTTEGQDTDSGPVDMSEVDDAEI 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T C C + Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 61 GPTTTVN----CPNCGHDRARYEMKQIRAADESETRFFTCVECDHKWRE 105
>gi|448455941|ref|ZP_21594873.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
gi|448470477|ref|ZP_21600484.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445808041|gb|EMA58118.1| transcription factor TFIIS [Halorubrum kocurii JCM 14978]
gi|445813160|gb|EMA63142.1| transcription factor TFIIS [Halorubrum lipolyticum DSM 21995]
Length = 108
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 11 FCKFCGTMLRMES--NHVVCSS--CKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+M+ +H VCSS C + +D D + + E+ + +S E
Sbjct: 3 FCDECGSMMMSGEGEDHWVCSSEDCDNELGREDDDDEWTTESQVESEV---IDVSDAE-- 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DKG L K C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 58 --DKG---LPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105
>gi|242011387|ref|XP_002426432.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510537|gb|EEB13694.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 108
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC C +L +E S C +C + N+ + V+ R Y +E+ LG
Sbjct: 2 LLFCPTCANVLGVEEGERSLRFACHTCPYIFNIARKVSSR---YYPRLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + C KC + Y+ QTRSADE TT+Y C P CGHR ++
Sbjct: 55 ----GSAAWENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCNPECGHRWRD 108
>gi|256810757|ref|YP_003128126.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
gi|256793957|gb|ACV24626.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
Length = 108
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C C +++ +E Y E K ++ + +G+
Sbjct: 4 FCPKCKNLMLPKDGKLKCVVCGYEEETGSEGSKEYEYKEHLENRKEKITVI-----EGEG 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L + C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 59 VET-LPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>gi|448546053|ref|ZP_21626380.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-646]
gi|448548127|ref|ZP_21627471.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-645]
gi|448557232|ref|ZP_21632585.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-644]
gi|445703399|gb|ELZ55330.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-646]
gi|445714534|gb|ELZ66294.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-644]
gi|445714829|gb|ELZ66587.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-645]
Length = 109
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVNQNGAMTCTN----DDCGGTAERDEELAAEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDDCGHTKAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|57640468|ref|YP_182946.1| DNA-directed RNA polymerase subunit M [Thermococcus kodakarensis
KOD1]
gi|57158792|dbj|BAD84722.1| archaeal transcription factor S [Thermococcus kodakarensis KOD1]
Length = 110
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + E K + I + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTKITKKVEHKPDEEIIVVEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CG+
Sbjct: 60 --DLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGY 104
>gi|452838895|gb|EME40835.1| hypothetical protein DOTSEDRAFT_137176 [Dothistroma septosporum
NZE10]
Length = 122
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 9 FLFCKFCGTMLRMESN-----HVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGIS 61
+FC CG +L ESN ++ C C + K V + ++ L
Sbjct: 7 LVFCTDCGNLL--ESNTGRKAYISCDVCGAQNKDTSSKVVTSHSKPSAFPSALRTRLRSD 64
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ E + D+ +T++ +K CE C N E+ + T Q RSADEG T +Y C +C H+
Sbjct: 65 VQEISEADR-QTEV-IIKHTCENCGNDEVKFYTMQLRSADEGSTVFYTCLKCNHK 117
>gi|48477966|ref|YP_023672.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
gi|48430614|gb|AAT43479.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
Length = 101
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 28/119 (23%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFK---------KNVQDVADREISYAVTAEEIKRELGI 60
+FC CG+++ + +C SC ++ K V +D+EI I++E+
Sbjct: 1 MFCPKCGSLMTPSNGKYICRSCGYEMSKGAEKSTKIVNKSSDKEIIM------IEKEVNA 54
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + C KC + YY +QTRSADE +T +Y C CG+R +E
Sbjct: 55 EPLDS-------------EAVCPKCHHVGAYYLLKQTRSADEPETKFYTCAACGYRWRE 100
>gi|384485432|gb|EIE77612.1| hypothetical protein RO3G_02316 [Rhizopus delemar RA 99-880]
Length = 104
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 22/112 (19%)
Query: 8 DFLFCKFCGTMLR---MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
D L C C R +E VV +S ++R ++ A KR L
Sbjct: 7 DILLCNQCSCAFRTAGIEGTEVVTTS----------SERSFQSSLKA---KRHL------ 47
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q + + + +K C C +PEM Y T Q RSADEGQT +Y C +CG++
Sbjct: 48 VQQSKEAQQARAIIKEKCPSCGHPEMEYHTMQLRSADEGQTVFYNCKKCGYK 99
>gi|325967986|ref|YP_004244178.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
gi|323707189|gb|ADY00676.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
Length = 100
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GE L KVK+ C KC E Y+ +QTR+ADE T +Y C RCG+ +E
Sbjct: 50 GEEALPKVKKTCPKCGYEEAYFWVQQTRAADEPPTRFYKCARCGYVWRE 98
>gi|327400303|ref|YP_004341142.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
gi|327315811|gb|AEA46427.1| transcription termination factor Tfs [Archaeoglobus veneficus SNP6]
Length = 104
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ + + +VC C ++K V D EI + A+ K E+ + +GD
Sbjct: 3 FCPKCKSIMIYQGDKLVCRKCGYEK-VADDEKEEI--VIVAKGNKEEVPVI-----EGDN 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+T L + C +C N E Y+ RQ R+ADE + ++ C +CG +E
Sbjct: 55 IKT-LPTTRVVCPECGNREAYWWLRQLRAADESEVRFFRCTKCGKTWRE 102
>gi|403352044|gb|EJY75527.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 106
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 10 LFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC C +L +E H C +C + V+ ++++ + +E+ LG
Sbjct: 2 LFCPTCANLLLIEKTHNDFRFFCKTCPYVFVVEQNFEKKMQ--LERKEVDDVLG------ 53
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + +++ C KC N Y+ Q RSADE TT+Y C +C ++ +E+
Sbjct: 54 --GKEAWENVDQIEAECHKCGNRRAYFMQIQIRSADEPMTTFYKCTKCSYQWREN 106
>gi|375083639|ref|ZP_09730657.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
gi|374741639|gb|EHR78059.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
Length = 108
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CG+++ + VC C +++ + + A+R Y +T + I + EQ
Sbjct: 3 FCPKCGSIMLPDKKKGVFVCRKCGYEEPLDPETANR---YKITQKVKHEREDIPVIEQ-- 57
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L KVK C KC N E Y+ QTR+ DE T +Y C +CG+
Sbjct: 58 ---DIATLPKVKITCPKCGNDEAYWWEMQTRAGDEPSTIFYRCTKCGY 102
>gi|255080896|ref|XP_002504014.1| predicted protein [Micromonas sp. RCC299]
gi|226519281|gb|ACO65272.1| predicted protein [Micromonas sp. RCC299]
Length = 131
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 11 FCKFCGTMLRMESNHVV------------CSSCKFKKNVQDVADREISYAV-TAEEIKRE 57
FC CG++ ++E C+ C +NV+ D+ I + T++ +
Sbjct: 3 FCDRCGSLYKVEEASGAAAAIAVEGLVARCTGCNRCENVRAAFDKGIRESFSTSDTFLFK 62
Query: 58 LGISLFEQPQGDK-GETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICP 111
GI P G K G + +RA C KC + + + T Q RS DEGQT +Y CP
Sbjct: 63 YGIEPM-NPDGSKFGAVKDVTRERAVVDEKCPKCSHKGLNFYTMQLRSVDEGQTVFYECP 121
Query: 112 RCGH 115
+CGH
Sbjct: 122 KCGH 125
>gi|50287137|ref|XP_445998.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525305|emb|CAG58922.1| unnamed protein product [Candida glabrata]
Length = 128
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 9 FLFCKFCGTMLRM------ESNHVVCSSCKFK------KNVQDVADREISYAVTAEEIKR 56
+FC CG +L SN + CS C+ + N++ V ++ +KR
Sbjct: 7 LIFCDDCGNLLDNPEDKINNSNVIECSQCQAEYAKSQFTNLKVVTSTSEDAFPSSLRLKR 66
Query: 57 ELGISLFEQPQ-GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + ++ + D G T +K C KC + EM Y T Q RSADEG T +Y C +C +
Sbjct: 67 SVVKTHLKRDELKDDGAT----IKEKCPKCGHDEMRYQTLQLRSADEGATVFYTCIKCNY 122
Query: 116 R 116
+
Sbjct: 123 K 123
>gi|403223885|dbj|BAM42015.1| RNA polymerase small subunit [Theileria orientalis strain Shintoku]
Length = 108
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 10 LFCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C ++L E+ + C C++ + R Y + + K L + FE
Sbjct: 3 LFCPLCHSILYFEAKEFSQSSFTCLRCQYFMPITKNYYRATLYNIGKDVDKTPLSTNEFE 62
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K+ C C N E Y+ + QTRSADE T +++C C R +E
Sbjct: 63 HS---------PKIPAVCPYCNNNEAYFMSIQTRSADEPMTQFFVCTSCTKRWRE 108
>gi|367021154|ref|XP_003659862.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
gi|347007129|gb|AEO54617.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
Length = 111
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTML---RME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC +C +L RME SN + C +C + Q D I + + R+ +F
Sbjct: 3 ILFCPYCANLLILSRMETGSNRLECRTCPY----QHAIDMPI---YSRKNFPRKEKEDVF 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q KV+ C E + Q RSADE TT+Y C CGHR +E+
Sbjct: 56 GGP-GAWDNAQKGKVQCPTSNCSGDEAAFFQVQIRSADEPMTTFYKCMTCGHRWREN 111
>gi|118576604|ref|YP_876347.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
gi|118195125|gb|ABK78043.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 10/105 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C LR + VC C + ++ A R + A AE I++ + P +K
Sbjct: 3 FCPKCEDRLRKNGDASVCPKCGYTES----AARGPTKAKPAEGTPE---INVLDGPVDEK 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
LS +K CEKC + E + QTRSADE T +Y C +C H
Sbjct: 56 ---LLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSH 97
>gi|118396867|ref|XP_001030770.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila]
gi|89285084|gb|EAR83107.1| transcription factor S-II (TFIIS) [Tetrahymena thermophila SB210]
Length = 136
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 11 FCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL---------- 58
FC CG M+ M S+ V CS C+F +V + I + + K+ L
Sbjct: 14 FCPQCGNMIEMPLYSDKVECSKCEFLCSVLEYKCAPIVSRIEFNQKKQWLEQYRASQNKK 73
Query: 59 --GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
GI E+ DK + + + +K+ C C + +Y+ T QTRSADEG T +Y C C +
Sbjct: 74 IHGIE--EEDLEDKHKHKKATLKQECPDCGHDTLYFWTVQTRSADEGSTVFYECQDCKFK 131
>gi|209731118|gb|ACI66428.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCYRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P ++ QTRSADE TT+Y C CGHR ++
Sbjct: 55 ----GAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGHRWRD 108
>gi|448400179|ref|ZP_21571246.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
gi|445667719|gb|ELZ20359.1| transcription termination factor Tfs [Haloterrigena limicola JCM
13563]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + + ++C++ + + + DRE A E + + + ++ +
Sbjct: 3 FCDDCGSMMKAQGDRMICTNDECGASSE--RDREQEDAFVTTESQTDDDVIESDENANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + + V C++C N E +Y+ +QT SADE T ++ C CG +
Sbjct: 61 GKPKATDV--VCDECGNQEAWYTLKQTASADEPPTRFFKCTECGKK 104
>gi|12862220|dbj|BAB32384.1| unnamed protein product [Mus musculus]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L + + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVVEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|448330924|ref|ZP_21520200.1| transcription factor S [Natrinema versiforme JCM 10478]
gi|445610760|gb|ELY64529.1| transcription factor S [Natrinema versiforme JCM 10478]
Length = 109
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + +VC++ + + DRE A E + + + + +
Sbjct: 3 FCDDCGSMMKAEGDRMVCTNDDCGASSE--RDREQEDAFVTTESQTDDDVIESSEEANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ + + + C++C E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 61 GKPKATDI--ICDECGAEEAWYTLKQTASADEPPTRFFKCTDCGNRWRE 107
>gi|194740930|ref|XP_001952942.1| GF17465 [Drosophila ananassae]
gi|190626001|gb|EDV41525.1| GF17465 [Drosophila ananassae]
Length = 121
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 11 FCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L +V+C +CK K+ + DV E + + + + +
Sbjct: 10 FCPSCGSILPTLQVKGNVMCYNCK-KEFLPDVYSGEKTDFIIQFNTYDPSKVFNRTKRES 68
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ E V+R C KC + +M Y+T Q RSADEGQT ++ C +C +
Sbjct: 69 ESSEADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFK 116
>gi|195330831|ref|XP_002032106.1| GM23695 [Drosophila sechellia]
gi|194121049|gb|EDW43092.1| GM23695 [Drosophila sechellia]
Length = 120
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V+C +CK F+ +V E + + + + E
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G V+R C KC + +M Y+T Q RSADEGQT ++ C +C +
Sbjct: 70 SDADGPV----VERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFK 115
>gi|148643414|ref|YP_001273927.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222445656|ref|ZP_03608171.1| hypothetical protein METSMIALI_01297 [Methanobrevibacter smithii
DSM 2375]
gi|261349796|ref|ZP_05975213.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|148552431|gb|ABQ87559.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222435221|gb|EEE42386.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
gi|288860580|gb|EFC92878.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 15/112 (13%)
Query: 11 FCKFCGTMLR-MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG+ML E N + CS KK +D ++ ++ E+IK + +
Sbjct: 3 FCPECGSMLLPTEDNELKCSCGYTKKLSKDKSEYNVN-----EKIKENDSVI-------E 50
Query: 70 KGE--TQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
KGE L K C +C + E + +QTRSADE +T ++ C +CGH +E
Sbjct: 51 KGEDVNTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFKCLKCGHTWRE 102
>gi|289192260|ref|YP_003458201.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
gi|288938710|gb|ADC69465.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C C +++ +E Y E K ++ + E
Sbjct: 4 FCPKCNNLMLPKDGKLRCVVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESE------ 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L + C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 58 GLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>gi|17738105|ref|NP_524439.1| RpI12 [Drosophila melanogaster]
gi|7300774|gb|AAF55918.1| RpI12 [Drosophila melanogaster]
gi|216587887|gb|ACJ73151.1| GM14478p [Drosophila melanogaster]
Length = 120
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V+C +CK F+ +V E + + + + E
Sbjct: 10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G V+R C KC + +M Y+T Q RSADEGQT ++ C +C +
Sbjct: 70 SDADGPV----VERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFK 115
>gi|333988479|ref|YP_004521086.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
gi|333826623|gb|AEG19285.1| transcription termination factor Tfs [Methanobacterium sp. SWAN-1]
Length = 105
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CGT++ + + C C +K +D+ +S +E++K + I D
Sbjct: 3 FCPKCGTVMFPQGDCFECKKCGYK---EDITKESMSEYKVSEKVKAKESIIF----TSDD 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+T L K C KC+N E + +QTR ADE +T + C +CG+ +E
Sbjct: 56 IQT-LPTTKAICPKCKNKEASWWLQQTRRADESETRFLRCTKCGYTWRE 103
>gi|238231633|ref|NP_001154002.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
gi|209736212|gb|ACI68975.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|209737866|gb|ACI69802.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|225703324|gb|ACO07508.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCYRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P ++ QTRSADE TT+Y C CGHR ++
Sbjct: 55 ----GAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 108
>gi|392575324|gb|EIW68458.1| hypothetical protein TREMEDRAFT_24045, partial [Tremella
mesenterica DSM 1558]
Length = 108
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 9 FLFCKFCGTMLRMESNH-----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC +C L + +C +C +K N+ + + +++ LG
Sbjct: 1 MLFCPYCSNALTIGDQDNSDKCWICPTCPYKYNIAPGKQISMRTHLKRKQVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K+ C KC + YY Q RSADE TT+Y C C ++ +E
Sbjct: 57 ----GKEAWANVDKIDATCPKCDARKAYYRQLQIRSADEPMTTFYKCVDCSYQWRE 108
>gi|320100252|ref|YP_004175844.1| DNA-directed RNA polymerase subunit M [Desulfurococcus mucosus DSM
2162]
gi|319752604|gb|ADV64362.1| DNA-directed RNA polymerase, subunit M [Desulfurococcus mucosus DSM
2162]
Length = 114
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 11 FCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
C CG ++R + ++VC+ C ++ + RE + E E + L +
Sbjct: 4 LCPKCGGLMRPQRIDGKPYLVCTRCGYRLEAEASGVREFKVSTRIEHRPDEKTLVLKSEN 63
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + T+ + C KC E YY QTR+ADE T ++ C RCGH +E
Sbjct: 64 EANLPVTR----EVTCPKCGWHEAYYWMLQTRAADEPPTRFFKCTRCGHTWRE 112
>gi|296241788|ref|YP_003649275.1| DNA-directed RNA polymerase subunit M [Thermosphaera aggregans DSM
11486]
gi|296094372|gb|ADG90323.1| DNA-directed RNA polymerase, subunit M [Thermosphaera aggregans DSM
11486]
Length = 114
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREI-SYAVTA--EEIKRELGISLF 63
FC CG +++ + +VC C ++ +RE+ Y V++ E RE I +
Sbjct: 4 FCPKCGGLMKPVKSSNNTELVCVKCGYR---MRAGERELEKYRVSSRIEHSTREKTIVV- 59
Query: 64 EQPQGDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GD ++L K C KC N E YY QTR+ADE T +Y C +CGH +E
Sbjct: 60 ----GDVDTSKLPVSKEVTCPKCGNHEAYYWMIQTRAADEPPTRFYKCVKCGHTWRE 112
>gi|448618173|ref|ZP_21666518.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
gi|445747728|gb|ELZ99183.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
Length = 109
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + A+R+ A + + G L E +G +
Sbjct: 3 FCDECGSMMVSQNGVMTCTN----EECGATAERDEERAKEFVSTEAQSGDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C++C + E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDECGHTEAWYTIKQTASADEPPTRFFKCKECGYRWRE 107
>gi|410079138|ref|XP_003957150.1| hypothetical protein KAFR_0D03670 [Kazachstania africana CBS 2517]
gi|372463735|emb|CCF58015.1| hypothetical protein KAFR_0D03670 [Kazachstania africana CBS 2517]
Length = 125
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEI-------KRE 57
+FC CG +L + + V CS C+ + ++ ++ TAE+ K+
Sbjct: 7 LIFCLDCGNLLDNPSTVSGSEVTCSQCQANYPKSEFSNLKV-VTQTAEDAFPSSLRSKKS 65
Query: 58 LGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + ++ + + G +K C KC N EM Y T Q RSADEG T +Y C C ++
Sbjct: 66 VVKTSLKKNEVEDGAV----IKEKCPKCGNDEMRYHTLQLRSADEGATVFYTCTACNYK 120
>gi|291223913|ref|XP_002731949.1| PREDICTED: DNA directed RNA polymerase III polypeptide K-like
[Saccoglossus kowalevskii]
Length = 108
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYA--VTAEEIKRELGISL 62
+FC C +L +E S C++C F NV R+IS +E+ LG
Sbjct: 2 LMFCPTCANVLVVEEGPKSYRFSCNTCPFIHNVT----RKISSKKYPKLKELDDVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC + Y+ QTRSADE TT+Y C P+CGHR ++
Sbjct: 55 -----GAAAWENVDSTAETCPKCGHDRAYFMQIQTRSADEPMTTFYRCCHPQCGHRWKD 108
>gi|390371152|dbj|GAB65033.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + + V C +C FK +++ +I ++ + + +
Sbjct: 3 FFCPNCHNIVLVHIENGVYFYCKTCNFKYKIKN----KIFNKFDCKDHNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC + E Y+ + Q RSADE T +YIC +C H +E
Sbjct: 54 AVDVNNKNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTIFYICIKCNHHWKE 106
>gi|440298113|gb|ELP90754.1| DNA-directed RNA polymerase I subunit RPA12, putative [Entamoeba
invadens IP1]
Length = 122
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
V C C N M+Y + Q RS DEGQT YY CP CGH+
Sbjct: 79 VYEKCPACGNETMHYHSAQVRSVDEGQTVYYECPNCGHQ 117
>gi|393910153|gb|EFO18071.2| hypothetical protein LOAG_10428 [Loa loa]
Length = 56
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + V + C+KC + +M Y+ RQTRSADEGQT +Y+C +C + E+
Sbjct: 5 EGALENPVVDKICDKCGHGKMSYACRQTRSADEGQTVFYMCLKCNYNMVEN 55
>gi|222479401|ref|YP_002565638.1| transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
gi|222452303|gb|ACM56568.1| Transcription factor TFIIS [Halorubrum lacusprofundi ATCC 49239]
Length = 108
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRE-LGISLFEQP 66
FC CG+M++ +H VCSS + +D D E + T +++ E + +S E
Sbjct: 3 FCDECGSMMKSGEGEDHWVCSSEDCGNELGRDNGDDEWT---TESQVESEVIDVSDAE-- 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DKG L K C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 58 --DKG---LPKTTAHCPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105
>gi|327310138|ref|YP_004337035.1| transcription termination factor Tfs [Thermoproteus uzoniensis
768-20]
gi|326946617|gb|AEA11723.1| transcription termination factor Tfs [Thermoproteus uzoniensis
768-20]
Length = 98
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 28 CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQN 87
C C +++ V D A R + +A E + E+ ++ D L K K C KC N
Sbjct: 13 CPKCGYEEPVNDAA-RSAYRSKSAVERRNEILVA-------DAVAETLPKTKAVCPKCGN 64
Query: 88 PEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E Y +QTR+ADE T +Y C RCG+ +E
Sbjct: 65 EEAYVWMQQTRAADEPPTRFYRCTRCGYTWRE 96
>gi|403419783|emb|CCM06483.1| predicted protein [Fibroporia radiculosa]
Length = 374
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKREL 58
AD +G LFC CGT+L + + V C C +K+ R A EI
Sbjct: 5 ADKIG-SLLFCPDCGTLLNLPQDGDLEVPCEQCGYKEPASCFTRRA---AYENIEIVTRS 60
Query: 59 GISLFEQPQGDKGETQ---------LSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYY 108
F P K +TQ L KV C +C + E Y Q RSADEG T +Y
Sbjct: 61 HPDAFPSPLLQKRKTQTRVHDANEALLKVTEKCPECGHMEAYSQEAQLRSADEGSTIFY 119
>gi|440793835|gb|ELR15006.1| transcription factor SII (TFIIS) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 145
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG +L + ++ + C C F N ++ + I + R+ G + + D
Sbjct: 40 FCDNCGCLLPLTADSQINCKMCGFNVNADELEEHVIVTKAKPKSSIRQKG-----KKEED 94
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K + + + C KC + +MY+ T Q RS DEG T +Y C +C ++
Sbjct: 95 KSNDR-AIIDEKCPKCGHGKMYFYTMQLRSVDEGSTVFYECVKCAYK 140
>gi|429962736|gb|ELA42280.1| transcription factor S [Vittaforma corneae ATCC 50505]
Length = 104
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKF--KKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC FC L E S H++C++C + K NV + + + + +++E +
Sbjct: 3 FCPFCNNFLLPEHQQSVHLICTTCPYFYKLNVTLSFTQSNTVKIIEKVLRKEQDLKY--- 59
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+K + C+KC N E + QTRSADE T +Y C +C H +E
Sbjct: 60 ---------ANKCQIKCQKCSNGEALFVEIQTRSADEPMTIFYQCTKCHHNWKE 104
>gi|195453150|ref|XP_002073660.1| GK13021 [Drosophila willistoni]
gi|194169745|gb|EDW84646.1| GK13021 [Drosophila willistoni]
Length = 121
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L +V+C +CK ++ + +V E S + + +
Sbjct: 10 FCPSCGSILPPLQVKGNVICYNCK-EELLPEVYSGEKSEFTIQFNTYDPSKVFNRAKRES 68
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ E V+R C KC N +M Y+T Q RSADEGQT ++ C +C ++
Sbjct: 69 ESSEADGPVVERKCPKCGNDKMSYATLQLRSADEGQTVFFTCLKCKYK 116
>gi|409074516|gb|EKM74912.1| hypothetical protein AGABI1DRAFT_65164 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193616|gb|EKV43549.1| hypothetical protein AGABI2DRAFT_227329 [Agaricus bisporus var.
bisporus H97]
Length = 106
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + S N C++C ++ + + +E+ LG
Sbjct: 1 MLFCPTCANLLVISSDTGYNKWACNTCPYEFPI--TKQMTTRTRLKRKEVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD+ + + +C+KC + Y+ Q RSADE TT+Y C C H+ +E+
Sbjct: 54 ---GDEAWAHADQTQASCDKCNHDRAYFYQLQIRSADEPMTTFYRCTNCTHQWREN 106
>gi|198414669|ref|XP_002127488.1| PREDICTED: similar to nuclear RNA polymerase I small specific
subunit Rpa12 [Ciona intestinalis]
Length = 118
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 5 LGRDFLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI 60
D FC CG++L + N H+ C C ++ + + IS +AE E+
Sbjct: 3 FNTDSGFCPHCGSILPLPVNPMDTHISCR-CGYQTLSANCNNMIIS---SAEFTFNEVKK 58
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
++ KG T + ++R C KC + +M Y T+Q RSADEG + +Y C +CG
Sbjct: 59 KKSKKSTAAKGMTGPT-IERICVKCGHNQMTYKTQQMRSADEGMSIFYYCKKCG 111
>gi|169806618|ref|XP_001828053.1| DNA-directed RNA polymerase, subunit M-transcription elongation
factor TFIIS [Enterocytozoon bieneusi H348]
gi|161779181|gb|EDQ31205.1| DNA-directed RNA polymerase, subunit M-transcription elongation
factor TFIIS [Enterocytozoon bieneusi H348]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 10 LFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
+FC CGT++ + ++ H+ C CK + +++ I + ++I + I
Sbjct: 1 MFCD-CGTIIILNDIDTTHI-CKRCKVLISENTISNYSI---IQNKKIINTINI------ 49
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
++ + K K C KC N E + T Q RSADEGQT +Y C +CG + Q++
Sbjct: 50 --NEEKVSTFKTKNLCRKCGNNEAFVHTIQLRSADEGQTVFYECTKCGTKEQQN 101
>gi|433591301|ref|YP_007280797.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|448333023|ref|ZP_21522241.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
gi|448385537|ref|ZP_21564043.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
gi|433306081|gb|AGB31893.1| transcription factor S, archaeal [Natrinema pellirubrum DSM 15624]
gi|445624377|gb|ELY77761.1| transcription termination factor Tfs [Natrinema pellirubrum DSM
15624]
gi|445657032|gb|ELZ09864.1| transcription termination factor Tfs [Haloterrigena thermotolerans
DSM 11522]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +VC++ + + DRE A E + + + ++ +
Sbjct: 3 FCDDCGSMMKARGDRMVCTNDDCGASSE--RDREQEDAFVTTESQTDDDVIESDENANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ + + V C++C E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 61 GKPKANDV--ICDECGAEEAWYTLKQTASADEPPTRFFKCTECGNRWRE 107
>gi|407463340|ref|YP_006774657.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046962|gb|AFS81715.1| transcription termination factor Tfs [Candidatus Nitrosopumilus
koreensis AR1]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ ++ + CS C + + ++ ++I E ++E I FE G++
Sbjct: 3 FCPKCEVKLKKGTSGLQCSKCGYTEGQEEKQAKKII------ENEQEESILAFE---GNE 53
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GE +K CEKC + E + QTRSADE T +Y C +C
Sbjct: 54 GEESHPTIKIECEKCGHDEAVWWMLQTRSADEPTTQFYRCTKC 96
>gi|322780803|gb|EFZ10032.1| hypothetical protein SINV_03004 [Solenopsis invicta]
Length = 72
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
V+R C +CQN +M Y+T Q RSADEGQT +Y C +C
Sbjct: 36 VERQCPQCQNDKMSYATLQLRSADEGQTVFYTCTKC 71
>gi|395646358|ref|ZP_10434218.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
gi|395443098|gb|EJG07855.1| transcription termination factor Tfs [Methanofollis liminatans DSM
4140]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 9/111 (8%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
+FC C +++ + C C + ++ D I+ +T +EI
Sbjct: 1 MMFCPQCNSLMISSGGQLKCRRCGCIQAIEKEEDLRITTTITPKEIT---------IVDD 51
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D L + C KC+N ++ RQ RSADE + ++ C CGH +E
Sbjct: 52 DDKVNTLPTITVRCPKCENNLAFWWLRQLRSADESEVRFFRCTGCGHTWRE 102
>gi|84996923|ref|XP_953183.1| RNA polymerase small subunit [Theileria annulata strain Ankara]
gi|65304179|emb|CAI76558.1| RNA polymerase small subunit, putative [Theileria annulata]
Length = 108
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
LFC C ++L ES SS + ++ + Y T +E G +LFE +
Sbjct: 3 LFCPLCHSILYFESKEYNNSSFSCLRCSYNLPVTKNYYKETVCTNVKEAGKTLFEANEFQ 62
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
++ C C N E Y+ + QTRSADE T +++C C R +E
Sbjct: 63 HA----PRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVCTGCLKRWKE 108
>gi|68073273|ref|XP_678551.1| transcription factor [Plasmodium berghei strain ANKA]
gi|56499055|emb|CAI00136.1| transcription factor, putative [Plasmodium berghei]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + ++ C +C FK +++ +I +E + + +
Sbjct: 3 FFCPNCHNIVLVHVENGVYLYCKTCNFKYKIKN----KIYNKYDCKEFNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC + E Y+ + Q RSADE T +YIC C + +E
Sbjct: 54 AVDMNNKNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106
>gi|393216306|gb|EJD01796.1| hypothetical protein FOMMEDRAFT_20569 [Fomitiporia mediterranea
MF3/22]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + + N C++C + D I+ +T+ E + + +
Sbjct: 1 MLFCPSCANLLVISADTGLNKWACNTCPY--------DFPITNQMTSREWLQRKAVD--D 50
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GD AC KC N Y+ Q RSADE TT+Y C C ++ +E
Sbjct: 51 VLGGDAAWNDADSTTVACPKCDNDRAYFYQLQIRSADEPMTTFYRCTTCTYQWRE 105
>gi|170097063|ref|XP_001879751.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645154|gb|EDR09402.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 106
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + S N C++C ++ + + +++ LG
Sbjct: 1 MLFCPTCANLLVISSETGYNKWACNTCAYEFPISKQMTSRTR--LVRKQVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD+ + + +C+KC + + Y+ Q RSADE TT+Y C C H+ +E+
Sbjct: 54 ---GDEMWAHADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRCTSCAHQWREN 106
>gi|307212490|gb|EFN88221.1| DNA-directed RNA polymerase III subunit RPC10 [Harpegnathos
saltator]
Length = 109
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L +E CS+C F N+ Y KR+ + ++
Sbjct: 5 FCPKCSDLLSVEQGPTGLRFACSTCPFIHNITHKITTRTYY-------KRKEQVDVYSSD 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
+G + C +C +P YY+ QTRSADE T +Y C P+C H +E
Sbjct: 58 SAWEG---VDATDERCPRCSHPRAYYTQLQTRSADEPMTIFYKCCDPKCMHSWRE 109
>gi|296808049|ref|XP_002844363.1| SpRPA12 [Arthroderma otae CBS 113480]
gi|238843846|gb|EEQ33508.1| SpRPA12 [Arthroderma otae CBS 113480]
Length = 115
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 11 FCKFCGTML-RMESNHVVCSSC------KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC CG +L + S + C C + +D+ ++ + + ++ +S
Sbjct: 5 FCDSCGMILDELASTTIQCDVCGELNTNRLLTQTKDIISTSSNFPSSLRAKRSQVQVSTV 64
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + ++ CEKC E+ +S Q RSADEG T +Y C +CGH+
Sbjct: 65 QARES-------RTIQVDCEKCDAKEVTWSEMQLRSADEGSTIFYRCSKCGHK 110
>gi|50304397|ref|XP_452148.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641280|emb|CAH02541.1| KLLA0B13860p [Kluyveromyces lactis]
Length = 160
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 19/120 (15%)
Query: 9 FLFCKFCGTMLRMESNH---VVCSSC-------KFK--KNVQDVADREISYAVTAEEIKR 56
+FC CG +L + + + C+ C KF+ K V D+ + +++
Sbjct: 43 LIFCLECGDLLDGQESSQGKIRCNQCNASYNSSKFQNLKVVTSTNDKSFPSKIRSKKSLV 102
Query: 57 ELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ I+ E G + + C KC N +M+Y T Q RSADEG T +Y C CG+R
Sbjct: 103 KTSIAKNELKDG-------AIINEKCPKCANDKMHYHTLQLRSADEGATVFYTCTACGYR 155
>gi|452837073|gb|EME39016.1| hypothetical protein DOTSEDRAFT_139985 [Dothistroma septosporum
NZE10]
Length = 122
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 9/115 (7%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTA---EEIKRELGISLFE 64
FC CG +L R + C C N + S + + ++++ L L E
Sbjct: 9 FCTDCGDLLPRARPSQRTINCDVCG-TSNENKWPHKTTSVSKPSAFPSQLRQRLQAGLQE 67
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DK + ++ +++ACEKC E+ Y Q RSADEG T Y C +CGHR +E
Sbjct: 68 VSSTDKQQGKV--IQQACEKCSALELRYFELQLRSADEGTTLLYHCLQCGHRFKE 120
>gi|302423150|ref|XP_003009405.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
gi|261352551|gb|EEY14979.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
Length = 122
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L + ++C+ C + +D + IS + + +L L
Sbjct: 7 LVFCNDCGNLLPVSQGGKKAVLICACCNAEN--KDTGSKSISTSTKPTDFPSQLRQKLQS 64
Query: 65 QPQG---DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ Q K T + + C KC E+YY+ Q R ADEG TT+Y C +CG+R
Sbjct: 65 KVQTIEKHKVNTH-ALIDETCPKCGREEVYYTQLQLRGADEGSTTFYTC-KCGNR 117
>gi|195502361|ref|XP_002098190.1| GE24089 [Drosophila yakuba]
gi|194184291|gb|EDW97902.1| GE24089 [Drosophila yakuba]
Length = 120
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V+C +C+ F+ +V E + + + + E
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCRQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
G V+R C KC + +M Y+T Q RSADEGQT ++ C +C
Sbjct: 70 SDADGPV----VERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKC 112
>gi|307596161|ref|YP_003902478.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
gi|307551362|gb|ADN51427.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
Length = 112
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GE L KV++ C KC E Y+ +QTR+ADE T +Y C RCG+ +E
Sbjct: 62 GEEALPKVRKTCPKCGYEEAYFWVQQTRAADEPPTRFYKCVRCGYVWRE 110
>gi|50425541|ref|XP_461366.1| DEHA2F23540p [Debaryomyces hansenii CBS767]
gi|49657035|emb|CAG89772.1| DEHA2F23540p [Debaryomyces hansenii CBS767]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 9 FLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREI------SYAVTAEEIKRELGI 60
+FC CG +L + + C C + A+ ++ +A ++KR +
Sbjct: 7 LIFCTDCGNLLDTVGSKSTLNCKLCHKSYPTSNFANLKVITQSSEDAFPSALKMKRSVVK 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + + ++G T +K C KC EM Y Q RSADEG T +Y C CG+R
Sbjct: 67 TSLKNDELEEGAT----IKEKCPKCGTEEMQYHVLQLRSADEGATVFYTCTGCGYR 118
>gi|70935719|ref|XP_738907.1| transcription factor [Plasmodium chabaudi chabaudi]
gi|70948038|ref|XP_743577.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515491|emb|CAH84203.1| transcription factor, putative [Plasmodium chabaudi chabaudi]
gi|56523140|emb|CAH77369.1| hypothetical protein PC000189.02.0 [Plasmodium chabaudi chabaudi]
Length = 106
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C ++ + ++ C +C FK +++ +I E + + +
Sbjct: 3 FFCPNCHNIVLVHVENGVYLYCKTCNFKYKIKN----KIYNKYDCTEFNKTIPLD----- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +SK + C KC + E Y+ + Q RSADE T +YIC C + +E
Sbjct: 54 AVDMNNKNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVNCNYHWKE 106
>gi|195572682|ref|XP_002104324.1| GD18505 [Drosophila simulans]
gi|194200251|gb|EDX13827.1| GD18505 [Drosophila simulans]
Length = 120
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V C +CK F+ +V E + + + + E
Sbjct: 10 FCPSCGSILPELQVKGNVFCCNCKQEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESE 69
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G V+R C KC + +M Y+T Q RSADEGQT ++ C +C +
Sbjct: 70 SDADGPV----VERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFK 115
>gi|169769376|ref|XP_001819158.1| DNA-directed RNA polymerase I polypeptide [Aspergillus oryzae
RIB40]
gi|238501844|ref|XP_002382156.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus flavus NRRL3357]
gi|83767016|dbj|BAE57156.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692393|gb|EED48740.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus flavus NRRL3357]
Length = 121
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREI---SYAVTAEEIKRELGIS 61
+FC CG +L S +VCS C + +D+ + I S A R +
Sbjct: 7 LIFCNDCGNLLDESSGDPTKLIVCSICGARN--RDIVPKTIVSESKASAFPSTLRAKRSA 64
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ DK L++ C +C EMY++T Q RSADEG T +Y C CG++
Sbjct: 65 VQNLTAADKRTEALTQ--HTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYK 116
>gi|396081936|gb|AFN83550.1| DNA-directed RNA polymerase I subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 99
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 17/109 (15%)
Query: 10 LFCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+FC CGT++ ++SN V C CK K+N D+ I T EIK + I +
Sbjct: 1 MFC-ICGTLIYVKSNSTKVECLRCK-KENSVDM----IRPIYTEVEIKGDSCIEAID--- 51
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+K+K C C EM Y+T Q RS DEGQT +Y C CG++
Sbjct: 52 -----VSGAKIKHRCPACGAEEMMYNTVQVRSTDEGQTVFYSC-ECGYK 94
>gi|409051110|gb|EKM60586.1| hypothetical protein PHACADRAFT_179818 [Phanerochaete carnosa
HHB-10118-sp]
Length = 127
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 42/110 (38%), Gaps = 3/110 (2%)
Query: 9 FLFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + + N V C C + + + + L Q
Sbjct: 12 LLFCPDCGTLLNLPRDDENEVACEQCGHIEPASSYENITVITRSHPDAFPSALRQKGKTQ 71
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ E L V C C + E Y Q RSADEG T Y C +C H
Sbjct: 72 TKMHDSEAALLLVTEKCPSCGHMEAYSKEMQLRSADEGSTILYTCAKCKH 121
>gi|194904228|ref|XP_001981026.1| GG22692 [Drosophila erecta]
gi|194916194|ref|XP_001982968.1| GG11044 [Drosophila erecta]
gi|190647834|gb|EDV45162.1| GG11044 [Drosophila erecta]
gi|190652729|gb|EDV49984.1| GG22692 [Drosophila erecta]
Length = 120
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V+C +C+ F+ +V E + + + + E
Sbjct: 10 FCPSCGSILPELQVKGNVICCNCRQEFQPDVYSGEKSEFTIHFNTYDPSKVFSRTKRESE 69
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G V+R C KC + +M Y+T Q RSADEGQT ++ C +C +
Sbjct: 70 ADADGPV----VERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFK 115
>gi|159040983|ref|YP_001540235.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
gi|157919818|gb|ABW01245.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
Length = 115
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K L KVK C +C N E Y+ +QTR+ADE T +Y C RCG+ +E
Sbjct: 64 KANDNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRCTRCGYTWRE 113
>gi|68477699|ref|XP_717162.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
gi|68477862|ref|XP_717083.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438781|gb|EAK98107.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438863|gb|EAK98188.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
Length = 111
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + + N CS+C +FK N + DR+ + +E+ LG
Sbjct: 4 FCPNCSNMLLISAGDDGLNRFYCSTCPYEFKINGLQMYDRK---KLNRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|346970562|gb|EGY14014.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L + ++C+ C + +D + IS + + +L L
Sbjct: 7 LVFCTDCGNLLPVSQGGKKAVLICACCNAEN--KDTGSKSISTSTKPTDFPSQLRQKLQS 64
Query: 65 QPQG---DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ Q K T + + C KC E+YY+ Q R ADEG TT+Y C +CG+R
Sbjct: 65 KVQTIEKHKVNTH-ALIDETCPKCGREEVYYTQLQLRGADEGSTTFYTC-KCGNR 117
>gi|358383010|gb|EHK20679.1| hypothetical protein TRIVIDRAFT_49675 [Trichoderma virens Gv29-8]
Length = 136
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAE---EIKRELGISLFEQPQ 67
FC CG L + + ++ C N ++ ++ + + EI+++ + +Q Q
Sbjct: 5 FCGPCGNTLDISPDSIINCDCCGSMNKNELLAGIVTISSNSNFPSEIRQKRDTT--QQLQ 62
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
K + C KC E+ Y+ Q RSADEG T +Y CP C RC
Sbjct: 63 CLAPADTWPKTEETCRKCGAREVRYTALQLRSADEGTTLFYYCPECSERC 112
>gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174740|gb|ACB07793.1| DNA-directed RNA polymerase, subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 108
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 10 LFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+FC CGT+LR + C SC ++ + ++ VT+E G + E+
Sbjct: 1 MFCPKCGTLLRPKKAGKRLIYYCPSCGYESESPPKGNSQVITKVTSES-----GDVIIEE 55
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + V+ C KC N + Y+ QTR+ADE T Y C +CG+ +E
Sbjct: 56 ---ESEKISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKCTKCGYSWRE 106
>gi|405123241|gb|AFR98006.1| DNA-directed RNA polymerase I kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 133
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 9 FLFCKFCGTMLRM---ESNHVVCSSC---KFKKNVQDVADREISYA---VTAEEIKRELG 59
LFC CGT+L + + N + CS C + + +++ + S ++ KR L
Sbjct: 14 LLFCPACGTLLDLPKDDQNEIACSQCGRLEPASSYENLPTKTYSSPNAFPSSLRSKRALV 73
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ + + KG +++ K C+KC + + Y Q RSADEG T +Y C CG
Sbjct: 74 QNKLDAGEAAKGRDPVAQEK--CQKCGHIGLSYKEMQLRSADEGSTIFYKCLNCG 126
>gi|221484964|gb|EEE23254.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii GT1]
Length = 348
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K CE C + E ++ST Q RSADEG T Y C +CGHR
Sbjct: 306 KETCEACGHGEAFFSTFQARSADEGMTVMYECVKCGHR 343
>gi|237836081|ref|XP_002367338.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211965002|gb|EEB00198.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221505981|gb|EEE31616.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 348
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K CE C + E ++ST Q RSADEG T Y C +CGHR
Sbjct: 306 KETCEACGHGEAFFSTFQARSADEGMTVMYECVKCGHR 343
>gi|260829971|ref|XP_002609935.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
gi|229295297|gb|EEN65945.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
Length = 108
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYA--VTAEEIKRELGISL 62
LFC C +L E C +C + N+ +IS+ +E+ LG
Sbjct: 2 LLFCPTCANLLVAEEGEKCYRFGCQTCPYIYNIT----HKISFKKYPKLKEVDDVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + + C KC++P Y+ QTRSADE TT+Y C CGHR ++
Sbjct: 55 -----GPEAWANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGHRWKD 108
>gi|406868604|gb|EKD21641.1| putative DNA-directed RNA polymerase I subunit [Marssonina brunnea
f. sp. 'multigermtubi' MB_m1]
Length = 126
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKF---KKNVQDVADREISYAVTAEEIKRELGIS 61
+FC C ML S +VC C KNV D A + I + L
Sbjct: 7 LVFCTDCANMLDSSSGSMNSVLVCDYCGAHNKAKNVSDTASKTIITSTQPSSFPSLLRQK 66
Query: 62 LFEQPQGDKGETQL-SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E Q ++G+ Q + +K C +C E+ Y+ Q RSADEG T +Y C CG++
Sbjct: 67 RSEIQQIERGDLQNEATIKVTCTECGRDEVRYTAVQLRSADEGSTIFYRCD-CGNK 121
>gi|145245255|ref|XP_001394895.1| DNA-directed RNA polymerase I polypeptide [Aspergillus niger CBS
513.88]
gi|134079593|emb|CAK40810.1| unnamed protein product [Aspergillus niger]
gi|350631605|gb|EHA19976.1| hypothetical protein ASPNIDRAFT_39394 [Aspergillus niger ATCC 1015]
Length = 121
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSC--KFKKNVQD--VADREISYAVTAEEIKRELGI 60
+FC CG++L + +VC C + K V V++ + S +A KR
Sbjct: 7 LVFCTDCGSLLDGSIGDPTKILVCDVCGARNKDTVPQTIVSESKPSAFPSALRAKRSAVQ 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+L + + TQ C KC EMYY+T Q RSADEG T +Y C CGH+
Sbjct: 67 TLTASDRRTEALTQ-----HTCIKCGRKEMYYTTVQLRSADEGSTVFYTCV-CGHK 116
>gi|397775806|ref|YP_006543352.1| transcription factor S [Natrinema sp. J7-2]
gi|397684899|gb|AFO59276.1| transcription factor S [Natrinema sp. J7-2]
Length = 93
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M++ E C SC + + D AD+ Y VT ++ E+ S GET L +
Sbjct: 1 MMKAEDGLWKCGSCGYTEPKGD-ADQ---YIVTDDQEASEIIES--------SGETSLPE 48
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C N ++ +Q RSADE +T ++IC C H+ +E
Sbjct: 49 TDAICPECGNDRAHWYMQQIRSADESETRFFICTECEHKWRE 90
>gi|118431049|ref|NP_147234.2| transcription factor S [Aeropyrum pernix K1]
gi|116062375|dbj|BAA79403.2| archaeal transcription factor S [Aeropyrum pernix K1]
Length = 118
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF-EQ 65
FC CG+++ + + +VC SC + + + VT E+ R+ + + E
Sbjct: 7 FCPRCGSIMYPKRDGARYLLVCKSCGYSEEASREDHQAYRMRVTVEKGPRDKIVVIDDET 66
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P G Q+ K C KC + E+Y+ QTRSADE T +Y C RC + +E
Sbjct: 67 PVG----AQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116
>gi|125773775|ref|XP_001358146.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|195143603|ref|XP_002012787.1| GL23744 [Drosophila persimilis]
gi|54637881|gb|EAL27283.1| GA12270 [Drosophila pseudoobscura pseudoobscura]
gi|194101730|gb|EDW23773.1| GL23744 [Drosophila persimilis]
Length = 121
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 11 FCKFCGTMLR--MESNHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V+C +C +F +V E S + + + +
Sbjct: 10 FCPSCGSILPPLQVKGNVICHNCHQEFLPDVYGGEKTEYSIQFNTYDPSKVFNRT---KR 66
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + E V+R C KC + +M Y+T Q RSADEGQT ++ C +C ++
Sbjct: 67 ESESSEADGPVVERKCPKCGHDKMSYATLQLRSADEGQTVFFTCLKCKYK 116
>gi|308162510|gb|EFO64898.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
P15]
Length = 103
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 23/112 (20%)
Query: 11 FCKFCGTMLRMESNHVVCSSC--KFKKNVQ-DVADREI---SYAVTAEEIKRELGISLFE 64
FC+ C T+L + C+ C K+++ Q DV E+ ++ +T E + +
Sbjct: 4 FCQECATILETMGPYDYCALCQKKYERAQQGDVVTSEVHLQTHYMTQEHMTENRPV---- 59
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C KC + + YYS+ Q RSADEGQT ++ C CGH+
Sbjct: 60 -------------IDETCPKCHHGQAYYSSIQMRSADEGQTIFFECCNCGHK 98
>gi|403273558|ref|XP_003928575.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Saimiri
boliviensis boliviensis]
Length = 100
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 34/119 (28%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC CG L +E + C++C + N I R++G
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHN-----------------ITRKVG----- 39
Query: 65 QPQG-----DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
P+G D +L + ++ C KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 40 -PEGGRLSQDSRFLRLRRHRQPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHR 97
>gi|315050149|ref|XP_003174449.1| hypothetical protein MGYG_04622 [Arthroderma gypseum CBS 118893]
gi|311342416|gb|EFR01619.1| hypothetical protein MGYG_04622 [Arthroderma gypseum CBS 118893]
Length = 110
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)
Query: 11 FCKFCGTML-RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG +L + S + C C + N + + T+ +L +
Sbjct: 5 FCDSCGMILDELASETIQCDICG-ELNTNRLLTQTKEIVSTSSNFPSKLRFKRSQVQVLA 63
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + ++ CEKC E+ ++ Q RSADEG T +Y C +CGHR
Sbjct: 64 TQERESRTIQVDCEKCDAKEVTWAEMQLRSADEGSTIFYSCSKCGHR 110
>gi|242398553|ref|YP_002993977.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
gi|242264946|gb|ACS89628.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
Length = 108
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC C +++ + + Y +T + I + EQ
Sbjct: 3 FCPKCGNIMLPDKKRGVFVCRKCGYEEPLD--LETASKYKITQKIKHDREDIPVIEQ--- 57
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L KVK C KC N E Y+ QTR+ DE T +Y C +CG+
Sbjct: 58 --DVATLPKVKITCPKCGNDEAYWWELQTRAGDEPSTIFYRCTKCGY 102
>gi|296109279|ref|YP_003616228.1| transcription termination factor Tfs [methanocaldococcus infernus
ME]
gi|295434093|gb|ADG13264.1| transcription termination factor Tfs [Methanocaldococcus infernus
ME]
Length = 104
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +L + C C + + E E++KR+ I++ E G++
Sbjct: 4 FCPKCNNVLLPSEGKLKCPVCGY------TEEGEKEGYEYKEKLKRKEEIAVIE---GNE 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L +K C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 55 IET-LPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRCKKCGHTWRE 102
>gi|391863881|gb|EIT73180.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Aspergillus oryzae 3.042]
Length = 159
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREI---SYAVTAEEIKRELGIS 61
+FC CG +L S +VCS C + +D+ + I S A R +
Sbjct: 7 LIFCNDCGNLLDESSGDPTKLIVCSICGARN--RDIVPKTIVSESKASAFPSTLRAKRSA 64
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ DK L++ C +C EMY++T Q RSADEG T +Y C CG++
Sbjct: 65 VQNLTAADKRTEALTQ--HTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYK 116
>gi|145591990|ref|YP_001153992.1| transcription termination factor Tfs [Pyrobaculum arsenaticum DSM
13514]
gi|379003304|ref|YP_005258976.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
gi|145283758|gb|ABP51340.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum arsenaticum DSM
13514]
gi|375158757|gb|AFA38369.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
Length = 110
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 26 VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVK-RACE 83
+VC C +++ QDV R S +T E + ++ E L KVK R C
Sbjct: 22 LVCPKCGYEEEASQDVKSRYQS-KMTVENKNPVVVVA--------GNEVNLPKVKTRGCP 72
Query: 84 KCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
KC + E Y+ +QTR+ADE T +Y C +CGH +E
Sbjct: 73 KCGHDEAYFWVQQTRAADEPPTRFYRCTKCGHTWRE 108
>gi|296815424|ref|XP_002848049.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma otae CBS
113480]
gi|238841074|gb|EEQ30736.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma otae CBS
113480]
Length = 123
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 9 FLFCKFCGTMLR---MESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L ++N ++ C C K D A R I +E +L
Sbjct: 7 LIFCVDCGNLLNESTGDANTILTCDICGTKNRALDCASRTI----VSESKPNAFPSALRA 62
Query: 65 QPQGDKGETQLSK-----VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + T+ + +++ C C EM Y T Q RSADEG T +Y C CGH+
Sbjct: 63 KSSAVRALTEEDRPANAVIQQTCPDCGRTEMRYYTLQLRSADEGSTVFYTC-ECGHK 118
>gi|156086858|ref|XP_001610836.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798089|gb|EDO07268.1| conserved hypothetical protein [Babesia bovis]
Length = 256
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+LF +K ++ VK+ C+ C E YYST Q RSADEG T Y C RC +R
Sbjct: 198 TLFMAKNANKSSREV--VKQLCDNCGFEEAYYSTFQARSADEGMTVMYECKRCKNR 251
>gi|328872688|gb|EGG21055.1| RNA polymerase I subunit [Dictyostelium fasciculatum]
Length = 264
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 16/109 (14%)
Query: 11 FCKFCGTMLRMES---NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC C ++L S + C +C + AD+ I + +LF++P+
Sbjct: 163 FCPTCNSLLSYVSEFATRIDCPTCSY------TADKSILKGQKTTSVS-----NLFKKPK 211
Query: 68 G-DKGETQLSKV-KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
D+ E V C +C + +MY+ T QTRSADEGQT +Y C +C
Sbjct: 212 ALDEEEADRGAVIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCMKCS 260
>gi|307106217|gb|EFN54463.1| hypothetical protein CHLNCDRAFT_24529 [Chlorella variabilis]
Length = 112
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 20/124 (16%)
Query: 5 LGRDFLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAE--EIKREL 58
+G LFC CG +L +E+ N CS+C ++ + DR+I+ V + E++ L
Sbjct: 1 MGSGLLFCPTCGNLLLVENHNGENQFSCSTCCYQYYI----DRQITKGVPLQRKEVEPVL 56
Query: 59 GISLFEQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G G++ + + C + C + + Y+ Q RSADE T +Y C +CG
Sbjct: 57 G--------GEEEWKNAPRTEARCPSDTCGHLQAYFKEAQIRSADEPATLFYRCAKCGRN 108
Query: 117 CQES 120
+E
Sbjct: 109 WREG 112
>gi|400596632|gb|EJP64403.1| putative DNA-directed RNA polymerase III subunit C11 [Beauveria
bassiana ARSEF 2860]
Length = 110
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C +L + +N + C +C F+ + + +Y +E +F
Sbjct: 2 LLFCPHCANILSVSRTNQGTNRLECRTCPFEHTITEPVFSRRNYERKEKE-------DVF 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q ++V+ E C E + Q RSADE T++Y C CGHR +E+
Sbjct: 55 GGP-GAWDNAQKARVQCPAENCDGLEAAFYQVQIRSADEPMTSFYKCMACGHRWREN 110
>gi|320590308|gb|EFX02751.1| DNA-directed RNA polymerase 1 kda [Grosmannia clavigera kw1407]
Length = 122
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L M + N +VC C N A + I + ++ L L
Sbjct: 7 LVFCTDCGNLLPMSKGSDRNRLVCRCCG-AHNQDQSASQTIVTSSNPKDFPSPLRQKLST 65
Query: 65 QPQGDKGETQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
++ + V C KC E+ ++T Q RSADEG T ++ C CGHR E+
Sbjct: 66 TQSVERHKVSTEAVTTETCPKCGRTEVRFTTAQIRSADEGSTVFFHCD-CGHRWSEN 121
>gi|241952420|ref|XP_002418932.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
gi|223642271|emb|CAX44240.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
Length = 111
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + + N CS+C +FK N + DR+ + +E+ LG
Sbjct: 4 FCPNCSNMLLISAGDDGLNRFYCSTCPYEFKINGLQMYDRK---KLHRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|433433110|ref|ZP_20407843.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. BAB2207]
gi|448600696|ref|ZP_21656075.1| DNA-directed RNA polymerase subunit M2 [Haloferax alexandrinus JCM
10717]
gi|448623014|ref|ZP_21669663.1| DNA-directed RNA polymerase subunit M2 [Haloferax denitrificans
ATCC 35960]
gi|432193278|gb|ELK50029.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. BAB2207]
gi|445734709|gb|ELZ86265.1| DNA-directed RNA polymerase subunit M2 [Haloferax alexandrinus JCM
10717]
gi|445753522|gb|EMA04939.1| DNA-directed RNA polymerase subunit M2 [Haloferax denitrificans
ATCC 35960]
Length = 109
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ ++ + C++ + A+R+ A + + L E +G +
Sbjct: 3 FCDECGSMMVSQNGAMTCTN----DDCGGTAERDEELAAEFVSTEAQSDDELIETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C+ C + + +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDDCGHTKAWYTIKQTGSADEPPTRFFKCQECGYRWRE 107
>gi|429848879|gb|ELA24315.1| DNA-directed RNA polymerase i subunit rpa12 [Colletotrichum
gloeosporioides Nara gc5]
Length = 128
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E N ++C C + +D + I + +L L
Sbjct: 7 LVFCVDCGNLLPASMGSEKNKLICDCCGAEN--KDTGSKTIITQTKPSDFPSQLRQKLQS 64
Query: 65 QPQG-DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q DK + + +K C KC E+ +S Q RSADEG T ++ C CG R
Sbjct: 65 NVQALDKNISTEATIKETCPKCGREEVRFSAVQLRSADEGSTIFFNC-DCGFR 116
>gi|315052532|ref|XP_003175640.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma gypseum
CBS 118893]
gi|311340955|gb|EFR00158.1| DNA-directed RNA polymerase I subunit RPA12 [Arthroderma gypseum
CBS 118893]
Length = 118
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI-SLF 63
+FC CG +L S + C C + D A R I L S
Sbjct: 7 LIFCVDCGNLLSESTGDASTILTCDICGTQNRALDRASRTIVSESKPSAFPSSLRTKSSA 66
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ ++G+ + ++ C C EM Y T Q RSADEG T +Y C CGH+
Sbjct: 67 VRTLSEQGKQDDAVIQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC-ECGHK 118
>gi|340507633|gb|EGR33565.1| RNA polymerase i subunit, putative [Ichthyophthirius multifiliis]
Length = 340
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 11 FCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL--------GI 60
FC CG ++ M S+ V C+ C+F +V + I + K L G+
Sbjct: 224 FCPQCGYLIEMPIYSDKVECNKCEFICSVLEYKCPPIISKIQFSHKKPWLEQYNAKIRGV 283
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
EQ K +K+K C +C MY+ T QTRSADEG T +Y C C H
Sbjct: 284 DDKEQNFNQKK----AKIKSECPQCGYHTMYFWTVQTRSADEGSTVFYECADCKH 334
>gi|389860780|ref|YP_006363020.1| transcription factor S [Thermogladius cellulolyticus 1633]
gi|388525684|gb|AFK50882.1| transcription factor S [Thermogladius cellulolyticus 1633]
Length = 103
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Query: 23 SNHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKR 80
+ ++VCS C K K +D+A + + E ++ L + D GE L +
Sbjct: 9 TYYLVCSRCGYKVKATERDLALYGLKVKIEHSEKEKTLVLK-------DSGEANLPVTRE 61
Query: 81 A-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C KC E YY QTR+ADE T +Y C RCGH +E
Sbjct: 62 VTCPKCGYHEAYYWFIQTRAADEPPTRFYKCRRCGHVWRE 101
>gi|407918864|gb|EKG12126.1| hypothetical protein MPH_10756 [Macrophomina phaseolina MS6]
Length = 121
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREI-------SYAVTAEEIKRE 57
+FC CG +L S +VC C + +D A + I ++ + + + E
Sbjct: 7 LVFCTDCGNLLDGSSGDSKATLVCEVCG--ASCKDTAAKTIVTHSKPSAFPSSLRDKRSE 64
Query: 58 LGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + Q D + +++ CEKC E+ Y T+Q RSADEG T +Y C CGH+
Sbjct: 65 VQTLTEDDMQTD------ATIRQTCEKCGREEVRYYTQQLRSADEGSTVFYTC-ECGHK 116
>gi|88602097|ref|YP_502275.1| transcription factor S [Methanospirillum hungatei JF-1]
gi|88187559|gb|ABD40556.1| DNA-directed RNA polymerase, subunit M [Methanospirillum hungatei
JF-1]
Length = 107
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC+ CG +L+ ++ +C+SC ++K +I+ + ++E I + + +
Sbjct: 3 MFCEKCGKLLKNQAGSFICTSCGWEKEGHGETKMKIT------DKRKEKEIVIVDDTESV 56
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
+ L + C C N E ++ RQ RSADE + ++ C +C H +E
Sbjct: 57 R---TLPTIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
>gi|448640595|ref|ZP_21677498.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|448651376|ref|ZP_21680445.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
gi|445761905|gb|EMA13144.1| DNA-directed RNA-polymerase subunit M [Haloarcula sinaiiensis ATCC
33800]
gi|445770903|gb|EMA21961.1| DNA-directed RNA-polymerase subunit M [Haloarcula californiae ATCC
33799]
Length = 99
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M++ + VC SC ++K A++E+ AVT + + + E D G T ++
Sbjct: 1 MMKTDDERWVCGSCGYEKARNAEAEQEM--AVTTQGQEESEVVDTSEVDAEDMGPTTGAR 58
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C N +Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 ----CPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 96
>gi|401413534|ref|XP_003886214.1| putative RNA polymerase [Neospora caninum Liverpool]
gi|325120634|emb|CBZ56188.1| putative RNA polymerase [Neospora caninum Liverpool]
Length = 324
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K CE C + E ++ST Q RSADEG T Y C +CGHR
Sbjct: 282 KETCEACGHGEAFFSTFQARSADEGMTVMYECVKCGHR 319
>gi|169236410|ref|YP_001689610.1| DNA-directed RNA polymerase subunit M2 [Halobacterium salinarum R1]
gi|167727476|emb|CAP14264.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + +VC+SC AD E S E + + E + D
Sbjct: 3 FCDECGSMMHKQDGEMVCASCGAS------ADSEGSEGFV--ETASQDTSDVIETSE-DA 53
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C +C + E +Y+ +QT SADE T ++ C CG+R
Sbjct: 54 ASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKCQDCGNR 99
>gi|409083004|gb|EKM83361.1| hypothetical protein AGABI1DRAFT_110030 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 125
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + ++ ++C C+ ++ + I+ + L Q
Sbjct: 10 LLFCPECGTLLSRPKDSADSIICEQCRHEEPASSYDNIVITTRSHPDAFPSALRQKRKTQ 69
Query: 66 PQ-GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ DKG+ Q + V C C + E Y Q RSADEG T +Y C C H
Sbjct: 70 TKFHDKGD-QGTLVSEKCPACGHMEAYSKEMQLRSADEGSTIFYTCASCKH 119
>gi|91093050|ref|XP_967369.1| PREDICTED: similar to RpI12 CG13418-PA [Tribolium castaneum]
gi|270002663|gb|EEZ99110.1| hypothetical protein TcasGA2_TC005003 [Tribolium castaneum]
Length = 125
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L ++ V C +C+ + SY + + + +
Sbjct: 13 FCPDCGSILPPLKQTGGVKCYACERNFPSDVFRGTKASYVIHFNSRDYKTHSMNKQNNKK 72
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D+ E V R C KC + +M Y+T Q RSADEGQT +Y C +C
Sbjct: 73 DEEEDDGPVVDRKCAKCGHDKMTYATVQLRSADEGQTVFYTCTKC 117
>gi|326634546|pdb|3QT1|I Chain I, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 133
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 9 FLFCKFCGTML----RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC+ C ML E+N ++ C +C + V++ + I G+
Sbjct: 24 FRFCRDCNNMLYPREDKENNRLLFECRTCSY---VEEAGSPLVYRHELITNIGETAGVV- 79
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
Q + L + R C KC + E + Q RSADE TT+Y C CGHR +E+
Sbjct: 80 ----QDIGSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133
>gi|71749298|ref|XP_827988.1| RNA polymerase III C11 subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833372|gb|EAN78876.1| RNA polymerase III C11 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261333746|emb|CBH16741.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 126
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 22/128 (17%)
Query: 10 LFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAV--------------TA 51
FC FCGT+L +E N CSSC++ +Q I+++ ++
Sbjct: 2 FFCPFCGTLLLIEPAYPCNRFSCSSCRYVVPIQSRRPLTINHSFLKYNKVVDDDDEKGSS 61
Query: 52 EEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICP 111
+KR G+ E+ + D G+ + + ++C +Y Q RSADE TT++ C
Sbjct: 62 NTVKR--GVK--EEEEVDGGQVITVRCQNDEKQCDGDRAHYVQIQMRSADEPATTFFKCL 117
Query: 112 RCGHRCQE 119
+CG + ++
Sbjct: 118 KCGFQWKQ 125
>gi|352681801|ref|YP_004892325.1| transcription elongation factor TFS/RNA polymerase subunit M
[Thermoproteus tenax Kra 1]
gi|350274600|emb|CCC81245.1| archaeal transcription elongation factor TFS/RNA polymerase subunit
M [Thermoproteus tenax Kra 1]
Length = 109
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 11 FCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC G++L R E+ + C C +++ + + +Y + +RE +
Sbjct: 3 FCPKDGSLLMPVRRGETTVLRCPKCGYEEPLNETTKN--AYRSRSSIERREALLV----- 55
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DK L K K C KC N E Y +QTR+ADE T +Y C +CG+ +E
Sbjct: 56 -ADKAFETLPKTKVVCPKCGNEEAYVWMQQTRAADEPPTRFYRCTKCGYTWRE 107
>gi|336121142|ref|YP_004575917.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
gi|334855663|gb|AEH06139.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
Length = 105
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + +VC+ C ++++++ D E K+E+ + +
Sbjct: 4 FCPKCKNIMLPKDGKLVCTVCGYEEDLEQ-TDESYELKEKIESNKQEIVVI--------E 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C KC N E Y+ +QTR ADE +T +Y C +CG+ +E
Sbjct: 55 DVNTLPTTRIECPKCGNMEAYWWLQQTRCADEPETRFYKCTKCGYTWRE 103
>gi|384249980|gb|EIE23460.1| hypothetical protein COCSUDRAFT_28851 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 11 FCKFCGTMLRMESNHV-----VCSSCKFKKNVQDVADREISYAVTAE--EIKRELGISLF 63
FC C +L ++++ V C C + + DR+I+ AV + E+ LG
Sbjct: 6 FCPTCANLLFVKASEVGDLVFYCQCCPYVYAI----DRQITRAVPLKKKEVDDVLG---- 57
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ + K C KC + Y+ QTRSADE T ++ C +C H +E
Sbjct: 58 ----GEDAWKNVQKTNVPCPKCGHTAAYFMEVQTRSADEPATLFFKCEKCAHNWREG 110
>gi|219113843|ref|XP_002186505.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583355|gb|ACI65975.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 85
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 76 SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ ++ C KC +PE+ Y T Q RS DEGQT +Y CP C H
Sbjct: 40 ATIEEPCIKCSHPEVGYYTVQLRSVDEGQTVFYECPNCKH 79
>gi|297697612|ref|XP_002825945.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pongo
abelii]
Length = 126
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG---IS 61
LFC CG L +E + C++C + N+ E + + S
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVGPEGRRWAAGDSRRPSASSDCCS 61
Query: 62 LFEQPQGDKGE-----TQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCG 114
+ P T + C KC++P Y+ QTRSADE TT+Y C +CG
Sbjct: 62 IAASPGSRASSFFNVVTSFFSLPEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCG 121
Query: 115 HRCQE 119
HR ++
Sbjct: 122 HRWRD 126
>gi|344233023|gb|EGV64896.1| hypothetical protein CANTEDRAFT_104223 [Candida tenuis ATCC 10573]
Length = 123
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 76 SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ +K C KC + EM Y T Q RSADEG T +Y C CG++
Sbjct: 78 ATIKEKCPKCGHDEMQYHTLQLRSADEGATVFYTCTSCGYK 118
>gi|340975908|gb|EGS23023.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 111
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTML---RMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC +C ML RME+ N + C +C ++ ++ + + R +F
Sbjct: 3 ILFCPYCANMLILSRMETGGNRLECRTCPYQHPIE-------MPIYSRKHFTRREKEDVF 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q +V+ C E + Q RSADE TT+Y C CGHR +E+
Sbjct: 56 GGP-GAWDNAQKGRVQCPTADCPGDEAAFFQVQIRSADEPMTTFYKCMTCGHRWREN 111
>gi|238883920|gb|EEQ47558.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
albicans WO-1]
Length = 111
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + + N CS+C +FK N + DR+ + +++ LG
Sbjct: 4 FCPNCSNMLLISAGDDGLNRFYCSTCPYEFKINGLQMYDRK---KLNRKQVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|255947378|ref|XP_002564456.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591473|emb|CAP97705.1| Pc22g04170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 124
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 11 FCKFCGTMLRMES-NHVVCSSCKFKKNVQDVADREISYAVT-AEEIKRELGISLFEQPQG 68
FC+ CG +L + S + C C + D +IS + ++ +L Q
Sbjct: 4 FCEDCGHLLPVSSAEQIPCELCGKSTKNTILTDVQISSSTNFPSRLRTKLLSKTQVVSQK 63
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D G+ ++ ++ C +C N + ++ Q RSADEG T +Y C +C HR
Sbjct: 64 DLGDGPITDME--CPQCSNSKATWTEAQLRSADEGSTIFYCCTKCRHR 109
>gi|410902675|ref|XP_003964819.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Takifugu rubripes]
Length = 108
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQRCMRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++ ++ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGHRWRD 108
>gi|16082042|ref|NP_394466.1| DNA-directed RNA polymerase subunit M [Thermoplasma acidophilum DSM
1728]
gi|10640321|emb|CAC12135.1| probable transcription-associated protein TFIIS [Thermoplasma
acidophilum]
Length = 100
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG+++ + VC SC ++ + + +S + E I + +S +P
Sbjct: 1 MFCPKCGSLMTPVNGKYVCPSCGYEISKNKETIKIVSKSADKETIMIKEEVSA--EPLDS 58
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C + Y +QTRSADE +T +Y C CG+R +E
Sbjct: 59 DA---------VCPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99
>gi|229367554|gb|ACQ58757.1| DNA-directed RNA polymerase III subunit RPC10 [Anoplopoma fimbria]
Length = 108
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG +L +E C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPTCGNVLIVEEGQKCMRFACNTCPYVHNITRKVNNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC + Y+ QTRSADE TT+Y C CGHR ++
Sbjct: 55 ----GAAAWENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGHRWRD 108
>gi|312137238|ref|YP_004004575.1| DNA-directed RNA polymerase, subunit m [Methanothermus fervidus DSM
2088]
gi|311224957|gb|ADP77813.1| DNA-directed RNA polymerase, subunit M [Methanothermus fervidus DSM
2088]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREI--SYAVTAEEIKRELGISLFEQPQG 68
FC C ++ ++ + C+ C ++K + D+ + +Y T + KRE I
Sbjct: 3 FCPKCKALMVSKNGVLKCTRCGYEKKL----DKNVINTYKTTEKVGKREAVIF------- 51
Query: 69 DKGETQ-LSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K E + + VK+ C KC N E Y+ +QTR ADE +T ++ C +C + +E
Sbjct: 52 TKSEVKTMPTVKKECPKCGNNEAYWWLQQTRRADESETRFFRCTKCKYTWRE 103
>gi|354610480|ref|ZP_09028436.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353195300|gb|EHB60802.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 11/107 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSC-KFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG+M+ + + +VCSSC +++ D E + T++ I+ + +P
Sbjct: 3 FCDDCGSMMHKQGDEMVCSSCGAVEESEADGGFVETAAQDTSDVIETSEDANFEGKP--- 59
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C +C + +Y+ +QT SADE T ++ C CG R
Sbjct: 60 -------TAEETCPECGHDTAWYTIKQTGSADEPPTRFFKCKECGAR 99
>gi|190345416|gb|EDK37297.2| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC +C ML + S N + C++C +FK N + DR+ ++ +++ LG
Sbjct: 4 FCPYCSNMLLVGSSEDGCNRLYCTTCPYEFKINGLQMYDRK---NLSRKQVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + C + C + Y+ Q RSADE TT+Y C +C H+ +E+
Sbjct: 57 ----GDGAWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWREN 111
>gi|256084471|ref|XP_002578452.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|350646255|emb|CCD59089.1| DNA-directed RNA polymerase I, putative [Schistosoma mansoni]
Length = 164
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 38/151 (25%)
Query: 4 PLGRDFL---FCKFCGTML--RMESNHV-VCSSCKFKKNVQDVADREISYAVTAEE---- 53
PLG + + FC CGT+L ++E N + VC CK + ++ + ++ A+
Sbjct: 9 PLGLERIHRYFCYVCGTLLPHKLEVNDLLVCRKCKTSTCMHWFSNMDATFNTEAKSSKIG 68
Query: 54 ------------------------IKRELGISLFEQPQGDKGETQLS----KVKRACEKC 85
++ E+ + + Q + +Q + +++ C C
Sbjct: 69 QFNNDEYESTSLFFPSMIRGAKKILRSEIALKEALESQFENSTSQSTFDGPSIRKECAYC 128
Query: 86 QNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
N M Y T QTRSADEGQT Y C +C +
Sbjct: 129 GNDRMTYVTLQTRSADEGQTVIYTCTQCSKK 159
>gi|448611813|ref|ZP_21662243.1| DNA-directed RNA polymerase subunit M2 [Haloferax mucosum ATCC
BAA-1512]
gi|445742574|gb|ELZ94068.1| DNA-directed RNA polymerase subunit M2 [Haloferax mucosum ATCC
BAA-1512]
Length = 109
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M+ + + C++ + +R + T + EL E +G +
Sbjct: 3 FCDECGSMMVSQDGVMTCTNDECGTTAARDEERAKEFVSTEAQSDDEL----IETEEGAE 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + + C++C + E +Y+ +QT SADE T ++ C CG+R +E
Sbjct: 59 FEGKPTAKDVHCDECGHTEAWYTIKQTASADEPPTRFFKCKECGYRWRE 107
>gi|427786159|gb|JAA58531.1| Putative rna polymerase iii subunit c11 [Rhipicephalus pulchellus]
Length = 108
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC C +L ++ + C++C + N+ Q +++R+ +++ LG
Sbjct: 2 LLFCPTCSNILIVQESGNCYRFACNTCPYVHNIKQKMSNRKYPRLKDVDDV---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + + C KC + Y+ QTRSADE TT+Y C P+CGH+
Sbjct: 55 ----GAAAWENVDSTEEKCPKCSHGRAYFMQIQTRSADEPMTTFYKCCSPQCGHQ 105
>gi|288559803|ref|YP_003423289.1| transcription factor S Tfs1 [Methanobrevibacter ruminantium M1]
gi|288542513|gb|ADC46397.1| transcription factor S Tfs1 [Methanobrevibacter ruminantium M1]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG ML M N ++ +C +++ + +VA+RE + E K+E + + D
Sbjct: 3 FCPKCGKML-MPKNDILKCACGYEEKISAEVAEREYKFK---GERKKENKVIV-----TD 53
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
L K C KC + + T QTRSADE T + C +CG+ + S
Sbjct: 54 NNNIALPTTKITCYKCGGTKGVWWTVQTRSADEAPTYFIRCVKCGNTWRRS 104
>gi|50543398|ref|XP_499865.1| YALI0A08151p [Yarrowia lipolytica]
gi|49645730|emb|CAG83791.1| YALI0A08151p [Yarrowia lipolytica CLIB122]
Length = 124
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRMESN---HVVCSSCKFK------KNVQDVADREISYAVTAEEIKRELG 59
+FC CG ++ + N + C C N+ V +A KR +
Sbjct: 7 LIFCTDCGNLMDTQLNASKDLECDQCDASFPSANTTNLTVVTKSAPDAFPSALRSKRSVV 66
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + D+G + +K C +C + EM Y T Q RSADEG T +Y C +C ++
Sbjct: 67 KTSLAAGEADEG----AIIKEKCPQCGHDEMQYHTLQLRSADEGATVFYTCTKCHYK 119
>gi|402079417|gb|EJT74682.1| hypothetical protein GGTG_08520, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 72 ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
E +++ C+ C E+ Y+T QTR ADEG T +Y CP+C R +E+
Sbjct: 37 ENHWPSIEQDCQFCDAKEIRYTTLQTRGADEGSTVFYFCPKCKQRYKEN 85
>gi|159113781|ref|XP_001707116.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
gi|157435219|gb|EDO79442.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC CG +L +E + V C +C ++ + R ++ +T + + LG
Sbjct: 2 LFCPCCGNLLLIELSGDVQFYCKTCAYRYTLSGQISRSLT--LTRKSVDPVLG------- 52
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ K + C C P+ ++ Q RS+DE + +Y C +C H+ +E
Sbjct: 53 -GETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104
>gi|403330665|gb|EJY64226.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 81
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
V+ C C + MYY T Q RSADEGQT ++ C +CGH+
Sbjct: 38 VQEDCPNCDSDLMYYHTMQLRSADEGQTVFFECVKCGHQ 76
>gi|167045007|gb|ABZ09671.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_APKG8G15]
Length = 106
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ ++ + C CK+ K D + +E EE E + ++ +
Sbjct: 3 FCPKCEVRLKNDNGLLSCPKCKYVKEKTDKSIKE-----KPEETNSEFLV--MDESDLSQ 55
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ S +K CEKC N E + QTRSADE +T +Y C +C +
Sbjct: 56 AKGLESTIKIDCEKCHNQEGVCWSLQTRSADEPETRFYRCTKCNY 100
>gi|154150454|ref|YP_001404072.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
gi|153999006|gb|ABS55429.1| transcription termination factor Tfs [Methanoregula boonei 6A8]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C ++L + C C + + + E + +T E + E I++ + D
Sbjct: 1 MFCPECKSLLMSSGGQLKCRKCGYIRKI------ESNDKMTMERKRTENEITIVDDE--D 52
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + ++ C KC+N ++ RQ R+ADE + ++ C CGH
Sbjct: 53 EKVNTMPTIQIKCPKCENNLAFWWLRQLRAADESEVRFFRCTECGH 98
>gi|253742495|gb|EES99325.1| RNA polymerase III subunit C11 [Giardia intestinalis ATCC 50581]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC CG +L +E V C +C ++ + R ++ +T + + LG
Sbjct: 2 LFCPCCGNLLLIELAGDVQFYCKTCSYRYTLSGQISRSLT--LTRKSVDPVLG------- 52
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ K C C PE ++ Q RS+DE + +Y C +C H+ +E
Sbjct: 53 -GETAWQGADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104
>gi|297619595|ref|YP_003707700.1| transcription termination factor Tfs [Methanococcus voltae A3]
gi|297378572|gb|ADI36727.1| transcription termination factor Tfs [Methanococcus voltae A3]
Length = 105
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C C F+ ++++ D+ Y ++ + + +++ E
Sbjct: 4 FCPKCNNIMLPKEGILKCVVCGFESSLENNKDK---YELSEKIESKSQDVTVIE------ 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L ++ C C N E Y+ +QTR ADE +T +Y C +C H +E
Sbjct: 55 NVNTLPSIRIECPSCGNMEAYWWLQQTRCADEPETRFYKCKKCSHTWRE 103
>gi|307186185|gb|EFN71891.1| DNA-directed RNA polymerase III subunit RPC10 [Camponotus
floridanus]
Length = 104
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 11 FCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC +C +LR + N C +C + ++ + E++++ + ++
Sbjct: 1 FCPYCANLLRFQEDPSGNRFACRTCPYIYKIKSAVTTRTFFN---EKLEKTVVVNKETAW 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+G + C KC P Y+ QTRSADEG T +Y C C H C
Sbjct: 58 EG------VDSTDERCPKCSYPRAYFKQLQTRSADEGMTLFYRC--CNHSC 100
>gi|374326953|ref|YP_005085153.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
gi|356642222|gb|AET32901.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
Length = 109
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 28 CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVK-RACEKCQ 86
C C ++++ + R S V R I L + T L +VK R C KC
Sbjct: 24 CPKCGYEEDASNAQGRYQSKTVVEN---RNTVIVLADN------ATNLPRVKTRGCPKCG 74
Query: 87 NPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ E Y+ +QTR+ADE T +Y C +CGH +E
Sbjct: 75 HDEAYFWVQQTRAADEPPTRFYKCTKCGHTWRE 107
>gi|170115725|ref|XP_001889056.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636004|gb|EDR00304.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 121
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 9 FLFCKFCGTMLRMESN---HVVCSSCKFKK---NVQDVADREISYA-VTAEEIKRELGIS 61
LFC CGT+L + + VVC C+ ++ + + V S+ ++++
Sbjct: 6 LLFCADCGTLLALPKDGETDVVCEQCQRQEPASSYESVVTTTRSHPDAFPSALRQKRKTQ 65
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
QGD+G + V C C + E Y Q RSADEG T +Y C C H
Sbjct: 66 TKHHAQGDQG----TLVAEKCPSCGHLEAYSKEMQLRSADEGSTIFYTCVSCKH 115
>gi|426201946|gb|EKV51869.1| hypothetical protein AGABI2DRAFT_190080 [Agaricus bisporus var.
bisporus H97]
Length = 125
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + + ++C C+ ++ + I+ + L Q
Sbjct: 10 LLFCPECGTLLSRPKDSEDSIICEQCRHEEPASSYDNIVITTRSHPDAFPSALRQKRKTQ 69
Query: 66 PQ-GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ DKG+ Q + V C C + E Y Q RSADEG T +Y C C H
Sbjct: 70 TKFHDKGD-QGTLVSEKCPACGHMEAYSKEMQLRSADEGSTIFYTCASCKH 119
>gi|302348255|ref|YP_003815893.1| DNA-directed RNA polymerase subunit M [Acidilobus saccharovorans
345-15]
gi|302328667|gb|ADL18862.1| putative DNA-directed RNA polymerase subunit M [Acidilobus
saccharovorans 345-15]
Length = 117
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
Query: 11 FCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CGT++R +S + VC C +++ V A + T +
Sbjct: 3 FCPRCGTLMRPKSINGKLVFVCPKCGYEEEVPSKARVATPLSFTERVAHTPKERIIVVDA 62
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
Q+ K C +C N E+ QTR+ADE T +Y C +CG+ +E
Sbjct: 63 NAPPPTAQVLKGSVRCPRCGNDEVLAWMMQTRAADEPPTRFYRCTKCGYTWRE 115
>gi|11498834|ref|NP_070063.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
gi|3287902|sp|O29033.1|RPOM_ARCFU RecName: Full=DNA-directed RNA polymerase subunit M
gi|2649347|gb|AAB90009.1| transcription-associated protein TFIIS [Archaeoglobus fulgidus DSM
4304]
Length = 103
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ + + +VC C ++K D + I E++ G +L
Sbjct: 3 FCPKCKSLMIYQGDKLVCRKCGYEKEADDSEELVIKVERNKEDVPVIEGENL-------- 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L K C C + E ++ RQ R+ADE + ++ C +CG +E
Sbjct: 55 --KTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101
>gi|322799904|gb|EFZ21045.1| hypothetical protein SINV_08736 [Solenopsis invicta]
Length = 110
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 14/111 (12%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC +C +LR N + C +C + ++ R +Y V G L +
Sbjct: 5 FCPYCANLLRFREDTFTRNRLACPTCPYIYQIRKEGLRSRTYFV---------GKKLSDI 55
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C KC +P ++ RQTRSADE + +Y C C ++
Sbjct: 56 LDSKSALLGQQATEERCPKCSHPRAFFEQRQTRSADEPMSLFYTCCSCSYK 106
>gi|15790670|ref|NP_280494.1| hypothetical protein VNG1743C [Halobacterium sp. NRC-1]
gi|10581201|gb|AAG19974.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 219
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 21/119 (17%)
Query: 7 RDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQ------DVADREISYAVTAEEIKRELGI 60
R FC CG+M+ + +VC+SC + + + A ++ S + E G
Sbjct: 114 RGMQFCDECGSMMHKQDGEMVCASCGASADSEGSEGFVETASQDTSDVIETSEDAASEGK 173
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E+ C +C + E +Y+ +QT SADE T ++ C CG+R ++
Sbjct: 174 PTAEE---------------TCPECGHGEAWYTIKQTGSADEPPTRFFKCQDCGNRWRD 217
>gi|344211251|ref|YP_004795571.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|448630345|ref|ZP_21673000.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|448667349|ref|ZP_21685891.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|448688986|ref|ZP_21694723.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
gi|343782606|gb|AEM56583.1| DNA-directed RNA polymerase subunit M [Haloarcula hispanica ATCC
33960]
gi|445756268|gb|EMA07643.1| DNA-directed RNA polymerase subunit M [Haloarcula vallismortis ATCC
29715]
gi|445770384|gb|EMA21448.1| DNA-directed RNA polymerase subunit M [Haloarcula amylolytica JCM
13557]
gi|445778856|gb|EMA29798.1| DNA-directed RNA polymerase subunit M [Haloarcula japonica DSM
6131]
Length = 99
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M++ + VC SC ++K A+ E AVT + + + E D G T ++
Sbjct: 1 MMKTDDERWVCGSCGYEKARN--AETEQEMAVTTQGQEESEVVDTSEVDAEDMGPTTGAR 58
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C N +Y +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 ----CPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 96
>gi|297844974|ref|XP_002890368.1| hypothetical protein ARALYDRAFT_472233 [Arabidopsis lyrata subsp.
lyrata]
gi|297336210|gb|EFH66627.1| hypothetical protein ARALYDRAFT_472233 [Arabidopsis lyrata subsp.
lyrata]
Length = 65
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 9 FLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAE 52
FLFC CGTML ++S +V C C+ +N +++ D+ ISY V+AE
Sbjct: 9 FLFCNLCGTMLVLKSTKYVECPLCETTRNAKEIIDKNISYTVSAE 53
>gi|407465720|ref|YP_006776602.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
gi|407048908|gb|AFS83660.1| transcription termination factor Tfs [Candidatus Nitrosopumilus sp.
AR2]
Length = 105
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ + + CS C + + + + + + AEE + + + FE GD+
Sbjct: 3 FCPKCEVKLKNSGSGLQCSKCGYTEG----GEIKTTKKIPAEE-EPDFSLLAFE---GDE 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
GE VK CEKC + E QTRSADE T +Y C +C +
Sbjct: 55 GEESNPTVKIDCEKCGHDEAVGWMFQTRSADEPTTRFYRCQKCKY 99
>gi|41615166|ref|NP_963664.1| hypothetical protein NEQ377 [Nanoarchaeum equitans Kin4-M]
gi|40068890|gb|AAR39225.1| NEQ377 [Nanoarchaeum equitans Kin4-M]
Length = 106
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 56/114 (49%), Gaps = 17/114 (14%)
Query: 11 FCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC G++L + ++VC C +KK V + + K ELG + E+
Sbjct: 3 FCPKDGSILIPKKEGDKTYLVCPVCGYKKEVTSLV------IKEEVKKKEELGKGIAEK- 55
Query: 67 QGDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET SK K C KC + E+ Y T QTR++DE +T +Y C +CG+ +E
Sbjct: 56 -----ETIYSKAKGVKCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGYTWRE 104
>gi|71029042|ref|XP_764164.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351118|gb|EAN31881.1| hypothetical protein TP04_0529 [Theileria parva]
Length = 108
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 10 LFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C ++L E + C C + V +E T +E G +LFE
Sbjct: 3 LFCPLCHSILYFEQKPENKSSFSCLRCTYNLPVTKDYHKE-----TVCTNVKEAGKTLFE 57
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ ++ C C N E Y+ + QTRSADE T +++C C R +E
Sbjct: 58 ANEFKHA----PRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVCTACLKRWKE 108
>gi|399217223|emb|CCF73910.1| unnamed protein product [Babesia microti strain RI]
Length = 112
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 10 LFCKFCGTMLRME--------SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
LFC C ++L ++ S+ CS C + + + I E+K++L
Sbjct: 2 LFCPICHSILFLKKSESSAAISSRFECSHCGYFYPI----TKAIVNTSEFPELKKKLTS- 56
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + E +K+ C C N E Y+ + Q RSADE T +Y C +C R +E
Sbjct: 57 --ESQLSENLENLAAKIMAICPTCNNNEAYFYSIQIRSADEPSTNFYTCTKCKKRWRE 112
>gi|389750913|gb|EIM91986.1| DNA-directed RNA polymerase, partial [Stereum hirsutum FP-91666
SS1]
Length = 125
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L + + V C C ++ + EI+ + L Q
Sbjct: 10 LLFCGDCGTLLDVPKADEGTVNCEQCGHEEPASSYENIEITTRSHPDAFPSALRQKRKTQ 69
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + L KV C +C + E + Q RSADEG T Y C C H
Sbjct: 70 TKTHEATEGLLKVTEKCPECGHMEAFSKEIQMRSADEGSTILYTCVACKH 119
>gi|253744550|gb|EET00750.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia
intestinalis ATCC 50581]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 23/112 (20%)
Query: 11 FCKFCGTMLRMESNHVVCSSC--KFKKNVQ-DVADREI---SYAVTAEEIKRELGISLFE 64
FC C T+L + C+ C K+++ Q DV E+ ++ + E + I
Sbjct: 4 FCHECTTLLETIGAYDYCALCQKKYERTHQGDVVTSEVHLQTHYIVHEGVTESRPI---- 59
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C KC + + YY++ Q RSADEGQT ++ C CGH+
Sbjct: 60 -------------IDEECPKCHHGQAYYTSMQMRSADEGQTIFFECCNCGHK 98
>gi|392863788|gb|EAS35443.2| DNA-directed RNA polymerase I polypeptide [Coccidioides immitis RS]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E+ +VC C K +D+A + I +E +L
Sbjct: 7 LIFCVDCGNLLNESTGDENTILVCDICGTKN--RDIASKTI----ISESKPEAFPSALRS 60
Query: 65 QPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + T K K A C++C PEM + T Q RSADEG T +Y C CG++
Sbjct: 61 KRSAVRTLTAEDKKKDAVIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC-ECGYK 116
>gi|119192746|ref|XP_001246979.1| hypothetical protein CIMG_00750 [Coccidioides immitis RS]
Length = 116
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E+ +VC C K +D+A + I +E +L
Sbjct: 7 LIFCVDCGNLLNESTGDENTILVCDICGTKN--RDIASKTI----ISESKPEAFPSALRS 60
Query: 65 QPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + T K K A C++C PEM + T Q RSADEG T +Y C CG++
Sbjct: 61 KRSAVRTLTAEDKKKDAVIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC-ECGYK 116
>gi|448524457|ref|XP_003868992.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis Co
90-125]
gi|380353332|emb|CCG26088.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRM-----ESNHVVCSSCKFKKNVQDVA--DREISYAVTAEEIKRELGISLF 63
FC C ML + +N CS+C ++ + ++ DR+ + +E+ LG
Sbjct: 4 FCPHCSNMLMISPGDDNNNRFYCSTCPYEFKIAGLSMYDRK---KLHRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|397773017|ref|YP_006540563.1| transcription factor S [Natrinema sp. J7-2]
gi|397682110|gb|AFO56487.1| transcription factor S [Natrinema sp. J7-2]
Length = 112
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 8 DFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
D FC CG+M++ + +VC++ + +RE ++ T + ++ E +
Sbjct: 3 DMQFCDDCGSMMKARGDRMVCTNDDCGAASERDREREDAFVTTESQTDGDV----IESSE 58
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + C++C E +Y+ +QT SADE T ++ C C ++ +E
Sbjct: 59 EANFEGKPKATDVVCDECGAEEAWYTLKQTASADEPPTRFFKCTDCKNKWRE 110
>gi|193652746|ref|XP_001942824.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
1 [Acyrthosiphon pisum]
gi|328705318|ref|XP_003242762.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform
2 [Acyrthosiphon pisum]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG++L S + C SCK + + Y + ++ + E +
Sbjct: 11 FCTKCGSILPSLSMEEFIKCYSCKTVFGPEIYGNAVAEYNIILNSVEDIDNVVKTENNKN 70
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
D + +++ R C C + +M Y+ Q RSADEGQT +Y C +C
Sbjct: 71 DADDGPIAE--RRCGLCGHNQMSYAAVQLRSADEGQTVFYTCLKC 113
>gi|391345184|ref|XP_003746871.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Metaseiulus occidentalis]
Length = 108
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC C ML E VC +C + + Q ++ R ++I LG
Sbjct: 2 LLFCPRCANMLSAEEGSEAFKFVCPTCPYVYQIRQCISKRTYPRLKPIDDI---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
+ + AC KC++P ++ QTRSADE TT+Y C +C H+ +E
Sbjct: 55 ----STAAWANVDSTEEACPKCEHPRAFFRQMQTRSADEPMTTFYKCCNMKCNHQWKE 108
>gi|259483810|tpe|CBF79505.1| TPA: DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
(AFU_orthologue; AFUA_2G05480) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG++L + +VC C + +D + I +E SL
Sbjct: 7 LVFCTDCGSLLEGSVGDPTRILVCDVCGTRN--KDTVPKTI----VSESKPSSFPSSLRA 60
Query: 65 QPQGDKGETQLSK-----VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + TQ K +++ C KC EMY++T Q RSADEG T +Y C CG++
Sbjct: 61 KRSAIQTLTQADKRTEALIEKDCPKCGRKEMYFTTVQLRSADEGSTVFYTC-VCGYK 116
>gi|159116058|ref|XP_001708251.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
gi|157436361|gb|EDO80577.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 23/112 (20%)
Query: 11 FCKFCGTMLRMESNHVVCSSC--KFKKNVQ-DVADREI---SYAVTAEEIKRELGISLFE 64
FC+ C T+L + C+ C K+++ Q DV E+ ++ V E + +
Sbjct: 4 FCQECATILETMGPYDYCALCQKKYERARQGDVVTSEVHLQTHYVAQERMTENRPV---- 59
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ C KC + + YY++ Q RSADEGQT ++ C CGH+
Sbjct: 60 -------------IDETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHK 98
>gi|354548243|emb|CCE44980.1| hypothetical protein CPAR2_407830 [Candida parapsilosis]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRM-----ESNHVVCSSCKFKKNVQDVA--DREISYAVTAEEIKRELGISLF 63
FC C ML + +N CS+C ++ + ++ DR+ + +E+ LG
Sbjct: 4 FCPHCSNMLMISPGDDNNNRFYCSTCPYEFKITGLSMYDRK---KLHRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|58265576|ref|XP_569944.1| DNA-directed RNA polymerase i 13.7 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134109635|ref|XP_776932.1| hypothetical protein CNBC4220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321253692|ref|XP_003192819.1| DNA-directed RNA polymerase i 13.7 kDa polypeptide [Cryptococcus
gattii WM276]
gi|50259612|gb|EAL22285.1| hypothetical protein CNBC4220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226176|gb|AAW42637.1| DNA-directed RNA polymerase i 13.7 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
gi|317459288|gb|ADV21032.1| DNA-directed RNA polymerase i 13.7 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 132
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 9 FLFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL-GISLFE 64
LFC CGT+L + + N + CS C + + + L
Sbjct: 14 LLFCPACGTLLDLPKDDQNEIACSQCGRLEPASSYENLPTKTYSSPNAFPSSLRSKRALV 73
Query: 65 QPQGDKGETQLSK--VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
Q + D GE + + C+KC + + Y Q RSADEG T +Y C CG
Sbjct: 74 QNKLDAGEAAKGRDPAQEKCQKCGHIGLSYKEMQLRSADEGSTIFYKCLNCG 125
>gi|91774117|ref|YP_566809.1| DNA-directed RNA polymerase, subunit M [Methanococcoides burtonii
DSM 6242]
gi|91713132|gb|ABE53059.1| DNA-directed RNA polymerase subunit M [Methanococcoides burtonii
DSM 6242]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +M+ + C C ++K V+D A +S T+ +RE+ + +GD
Sbjct: 3 FCPKCKSMMHPIEGTLKCRKCGYEK-VKDAAPDLLS---TSSREEREVTVL-----EGDT 53
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ L CE+C N Y+ RQ RSADE +T ++ C +C + +E
Sbjct: 54 -DIGLPTTTARCEECGNNTAYWWLRQLRSADESETRFFKCIKCSYTWRE 101
>gi|346470135|gb|AEO34912.1| hypothetical protein [Amblyomma maculatum]
Length = 108
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC C +L +E C++C + N+ Q ++ R+ +++ LG
Sbjct: 2 LLFCPTCSNILIVEEGSECFRFACNTCPYVCNIKQKMSSRKYPRLKDVDDV---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + + C KC + Y+ QTRSADE TT+Y C P+CGH+
Sbjct: 55 ----GAAAWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNPQCGHQ 105
>gi|116192953|ref|XP_001222289.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88182107|gb|EAQ89575.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 111
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTML---RMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC +C +L RM++ N + C +C ++ ++ + + R+ +F
Sbjct: 3 ILFCPYCANLLILSRMDTGGNRLECRTCPYQHAIE-------MPIYSRKNFPRKEKEDVF 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q +V+ C E + Q RSADE TT+Y C CGHR +E+
Sbjct: 56 GGP-GAWDNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKCMTCGHRWREN 111
>gi|346325447|gb|EGX95044.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Cordyceps
militaris CM01]
Length = 110
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISL 62
LFC C +L + +N + C +C F+ + + V R + +R+ +
Sbjct: 2 LLFCPHCANILTVSRTNQGTNRLECRTCPFEHTITEPVFSRRV--------YERKEKEDV 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P G Q ++V+ E C E + Q RSADE T++Y C CGHR +E+
Sbjct: 54 FGGP-GAWDNAQKARVQCPTEACDGHEAAFYQVQIRSADEPMTSFYKCMVCGHRWREN 110
>gi|195055055|ref|XP_001994438.1| GH16255 [Drosophila grimshawi]
gi|193892201|gb|EDV91067.1| GH16255 [Drosophila grimshawi]
Length = 120
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 11 FCKFCGTMLR--MESNHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG++L +V C +CK F +V E + + + EL + +
Sbjct: 10 FCPSCGSILPPLQVKGNVFCFNCKQEFSPDVYIGEKSEYTINFNSYD-PSELNKKVHRE- 67
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ E V+R C KC + +M Y+T Q RSADEGQT ++ C +C ++ E+
Sbjct: 68 --SETEADGPVVERKCPKCGHEKMSYATLQLRSADEGQTVFFTCLKCKYKESEN 119
>gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase subunit M [Pyrobaculum calidifontis JCM
11548]
gi|126249323|gb|ABO08414.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum calidifontis
JCM 11548]
Length = 124
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 73 TQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L KVK R C KC + E Y+ +QTR+ADE T +Y C +CGH +E
Sbjct: 75 VNLPKVKTRGCPKCGHDEAYFWVQQTRAADEPPTRFYKCTKCGHVWRE 122
>gi|378726250|gb|EHY52709.1| DNA-directed RNA polymerase I subunit A12 [Exophiala dermatitidis
NIH/UT8656]
Length = 123
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 9 FLFCKFCGTML------RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
LFC CG++L + + + V C C + +D + + I+ L
Sbjct: 7 LLFCDACGSLLPRIVPGQHKDDMVKCEDCF--QYTKDTSSKVITSHSRPSAFPSALRAKH 64
Query: 63 FEQPQGDKGETQLSKV-KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E + + Q+ V R C C EM+Y T+Q RSADEG T +Y C CG +
Sbjct: 65 SEVQAINAEDLQVEAVIARDCPNCHRSEMFYHTKQLRSADEGTTVFYRC-ECGFK 118
>gi|326436636|gb|EGD82206.1| RNA polymerase III subunit C11 [Salpingoeca sp. ATCC 50818]
Length = 108
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRMESN-----HVVCSSCKFKK--NVQDVADREISYAVTAEEIKRELGIS 61
F+FC C L ++++ H C +C +K N+ V+ R+ E+I +G S
Sbjct: 3 FMFCPLCTNQLVLDTSAECGTHFACRTCPYKHEMNMPVVSSRKSRNPKQVEDI---IGSS 59
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G LS C +C + ++ QTRSADE T +Y C C H+ E+
Sbjct: 60 T----EG------LSMTDARCPQCDHARAFFFEMQTRSADEPMTVFYCCEECKHKWSEN 108
>gi|303312615|ref|XP_003066319.1| DNA-directed RNA polymerase I, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240105981|gb|EER24174.1| DNA-directed RNA polymerase I, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320033574|gb|EFW15521.1| DNA-directed RNA polymerase I polypeptide [Coccidioides posadasii
str. Silveira]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E+ +VC C K +D+A + I +E +L
Sbjct: 7 LIFCVDCGNLLNESTGDENTILVCDICGTKN--RDIAPKTI----ISESKPEAFPSALRS 60
Query: 65 QPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + T K K A C++C PEM + T Q RSADEG T +Y C CG++
Sbjct: 61 KRSAVRTLTAEDKKKDAVIAHTCDQCGRPEMTFYTLQLRSADEGTTVFYSC-ECGYK 116
>gi|308801973|ref|XP_003078300.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
gi|116056751|emb|CAL53040.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
Length = 117
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 24/125 (19%)
Query: 9 FLFCKFCGTMLRMESNHVV--------------CSSCKFKKNVQDVADREISYAVTAEEI 54
FC C +L +E V C++C + +V D + + T + +
Sbjct: 2 LTFCPTCANLLLIERESAVGTSSSGGGGGVRLRCAACPYAYDVVDGVRQRVK--TTRKTV 59
Query: 55 KRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
LG GD+ + K C +C++ E Y+ Q RSADE + +Y C C
Sbjct: 60 DDVLG--------GDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCCECA 111
Query: 115 HRCQE 119
H+ +E
Sbjct: 112 HQWRE 116
>gi|14324969|dbj|BAB59895.1| transcription factor [TFIIS/RPB9] [Thermoplasma volcanium GSS1]
Length = 106
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG+++ + VC SC + +V+ ++ + + +E I + E+ +
Sbjct: 7 MFCPKCGSLMTPVNGRYVCPSCGY-----EVSKKKEDLKIVNKSNDKET-IMIREEVSAE 60
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
++ C +C + Y +QTRSADE +T +Y C CG+R +E
Sbjct: 61 PLDSDA-----ICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105
>gi|303271149|ref|XP_003054936.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462910|gb|EEH60188.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 64
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
V C KC N + + T Q RS DEGQT +Y CP+C H
Sbjct: 21 VDEKCPKCDNKGLNFYTMQLRSVDEGQTVFYECPKCAH 58
>gi|13541573|ref|NP_111261.1| DNA-directed RNA polymerase subunit M [Thermoplasma volcanium GSS1]
Length = 100
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 11/110 (10%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG+++ + VC SC + +V+ ++ + + +E I + E+ +
Sbjct: 1 MFCPKCGSLMTPVNGRYVCPSCGY-----EVSKKKEDLKIVNKSNDKET-IMIREEVSAE 54
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
++ C +C + Y +QTRSADE +T +Y C CG+R +E
Sbjct: 55 PLDSDA-----ICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 99
>gi|402870864|ref|XP_003899419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Papio anubis]
Length = 108
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C+ C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLMVEEGQRCHRFACNRCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
G + C KC++P Y+ QTRSADE TT+Y C
Sbjct: 55 ----GAAACENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKC 97
>gi|152031672|sp|O27369.2|RPOM_METTH RecName: Full=DNA-directed RNA polymerase subunit M
Length = 104
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG ++ C C ++K++ D + D+ Y V+ E +E I GD
Sbjct: 3 FCPKCGAVMFPSEGKFKCQ-CGYEKDITDKLKDK---YRVSEEVEAKETIIFT-----GD 53
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T L + C KC N E ++ +QTR ADE +T ++ C RC H +E
Sbjct: 54 DVNT-LPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102
>gi|408380972|ref|ZP_11178522.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
gi|407816237|gb|EKF86799.1| transcription termination factor Tfs [Methanobacterium formicicum
DSM 3637]
Length = 104
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 13/111 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNV--QDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CGT+L + + CS C ++K + + +++ E+S V +E + ++ G
Sbjct: 3 FCPKCGTVLFPKGDRFECS-CGYQKKITKESLSEYEVSEKVAPKE---NVIVT------G 52
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +T L K C KC N ++ +QTR ADE +T + C +CG +E
Sbjct: 53 DDVKT-LPTTKAVCPKCGNRLAFWWLQQTRRADESETRFLRCTKCGQTWRE 102
>gi|308162494|gb|EFO64883.1| RNA polymerase III subunit C11 [Giardia lamblia P15]
Length = 105
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC CG +L +E + V C +C ++ + R ++ +T + + LG
Sbjct: 2 LFCPCCGNLLLIELSGDVQFYCKTCAYRYMLSGQISRSLT--LTRKSVDPVLG------- 52
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ K + C C P+ ++ Q RS+DE + +Y C +C H+ +E
Sbjct: 53 -GETAWQGADKTQNPCPICAFPDAFWIQIQIRSSDEPMSRFYRCCQCAHQWRE 104
>gi|156356304|ref|XP_001623866.1| predicted protein [Nematostella vectensis]
gi|156210604|gb|EDO31766.1| predicted protein [Nematostella vectensis]
Length = 108
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRME------SNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGIS 61
LFC C +L +E + C +C + N+ + V+ ++ +E+ LG
Sbjct: 2 LLFCPSCANVLVVEEGTGPSAYRFACQTCPYVHNIAKKVSSKKYP---KLKEVDDVLG-- 56
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + C KC + Y+ QTRSADE TT+Y C CG+R +E
Sbjct: 57 ------GKSAWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCSCGNRWKE 108
>gi|71408018|ref|XP_806438.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70870187|gb|EAN84587.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 122
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 36/133 (27%)
Query: 10 LFCKFCGTMLRMESNH----VVCSSC-------------------KFKKNVQDVADREIS 46
FC FCGT+L +E +H CSSC KF K V+D A+
Sbjct: 2 FFCPFCGTLLLIEPHHPTNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDAN---- 57
Query: 47 YAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTT 106
V A IK + + D G+ + + + C +Y Q RSADE TT
Sbjct: 58 --VKANGIKTK-------NEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATT 108
Query: 107 YYICPRCGHRCQE 119
++ C +CG + ++
Sbjct: 109 FFKCLKCGFQWKQ 121
>gi|226484704|emb|CAX74261.1| DNA-directed RNA polymerase I subunit A12 [Schistosoma japonicum]
gi|226484706|emb|CAX74262.1| DNA-directed RNA polymerase I subunit A12 [Schistosoma japonicum]
Length = 163
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 41/155 (26%)
Query: 1 MADPLGRDFL---FCKFCGTML--RMESNHV-VCSSCKFKKNVQDVADREISYAVTAE-- 52
+ PLG + + FC CGT+L +E N + VC CK ++ + +++ A+
Sbjct: 6 LCTPLGLERIHRYFCYVCGTLLPHTLEVNDLLVCRKCKTSTCMRWFNNMNATFSTEAKCS 65
Query: 53 -------------------------------EIKRELGISLFEQPQGDKGETQLSKVKRA 81
+K+ LG L + K + +++
Sbjct: 66 KISQICDEYASTSLFFPTMIKSAKKILKSEISLKQTLGSHLGNDTRQSKFDG--PSIRKE 123
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C C N M Y T QTRSADEGQT Y C +C +
Sbjct: 124 CAYCGNDRMVYVTLQTRSADEGQTVIYTCTQCAKK 158
>gi|334182707|ref|NP_001185044.1| uncharacterized protein [Arabidopsis thaliana]
gi|98961745|gb|ABF59202.1| unknown protein [Arabidopsis thaliana]
gi|332191810|gb|AEE29931.1| uncharacterized protein [Arabidopsis thaliana]
Length = 91
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEE---IKRELGISLF 63
D LFC CGTML ++S + C C+ +N +++ D+ ++Y VT E + L I +F
Sbjct: 8 DILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEVCVFLYSALWILIF 67
Query: 64 EQPQGDKGETQLSKVKRACE 83
++ L V R+C+
Sbjct: 68 RCIHMCVNQSNLVSVSRSCK 87
>gi|448411557|ref|ZP_21575958.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
gi|445670129|gb|ELZ22733.1| DNA-directed RNA polymerase subunit M [Halosimplex carlsbadense
2-9-1]
Length = 99
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M++ E + VC SC ++++ + + E AVT + + I + D G T ++
Sbjct: 1 MMKTEGDAWVCGSCGYEESRNEAEEAET--AVTTQGQEETEVIDTSDVSAEDMGPTTDAR 58
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C N ++ +Q R+ADE +T ++ C C H+ +E
Sbjct: 59 ----CPECGNDRAFWEMKQIRAADESETRFFTCTECEHKWRE 96
>gi|116830735|gb|ABK28325.1| unknown [Arabidopsis thaliana]
Length = 92
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 8 DFLFCKFCGTMLRMESN-HVVCSSCKFKKNVQDVADREISYAVTAEE---IKRELGISLF 63
D LFC CGTML ++S + C C+ +N +++ D+ ++Y VT E + L I +F
Sbjct: 8 DILFCNLCGTMLVLKSTKYAECPLCETTRNGKEIIDKNLAYTVTTEVCVFLYSALWILIF 67
Query: 64 EQPQGDKGETQLSKVKRACE 83
++ L V R+C+
Sbjct: 68 RCIHMCVNQSNLVSVSRSCK 87
>gi|157118651|ref|XP_001659197.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Aedes aegypti]
gi|108883259|gb|EAT47484.1| AAEL001400-PA [Aedes aegypti]
Length = 108
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAE--EIKRELGISL 62
+FC CG +L +E S C++C + ++ R+IS + + E+ +G
Sbjct: 2 LMFCPTCGNLLLVEEGTDSLRFSCNTCPYICKIK----RKISTRIYPKLKEVDHVMG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C C + Y+ QTRSADE TT+Y C P CGH +E
Sbjct: 55 -----GAAAWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNPTCGHNWRE 108
>gi|448099787|ref|XP_004199221.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|448103594|ref|XP_004200074.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359380643|emb|CCE82884.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359381496|emb|CCE81955.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
Length = 111
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + S N C +C +F+ + + DR+ T +++ LG
Sbjct: 4 FCPNCANMLVISSEDGGSNRFQCLTCPYEFRLSGMQIYDRKKLSRKTVDDV---LG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + K C + C + Y+ Q RSADE TT+Y C +CGH+ +E+
Sbjct: 57 ----GDGAWENVDQTKVQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHKWREN 111
>gi|443697227|gb|ELT97762.1| hypothetical protein CAPTEDRAFT_5287 [Capitella teleta]
Length = 108
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
+FC C +L +E C++C + +NV + ++ R+ +E+ LG
Sbjct: 2 LMFCPTCANVLLVEEGPNCYRFACNTCPYIQNVNRKMSSRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGH 115
G + C KC N ++ QTRSADE TTYY C +CGH
Sbjct: 55 ----GSAAWENVDSTNEKCPKCSNDRAFFMQIQTRSADEPMTTYYKCCAMKCGH 104
>gi|300709064|ref|XP_002996700.1| hypothetical protein NCER_100160 [Nosema ceranae BRL01]
gi|239606021|gb|EEQ83029.1| hypothetical protein NCER_100160 [Nosema ceranae BRL01]
Length = 108
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 17/109 (15%)
Query: 10 LFCKFCGTMLRME--SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+FCK CGT++ +E S+ + C C A + S+ T +++ I + +
Sbjct: 10 MFCK-CGTIITVEKDSSEIKCVRCS--------AILDTSHLDTVV-MQKTFKIEEEVELK 59
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
KG +K+K C C EM Y+T Q RSADEGQT +Y C CG++
Sbjct: 60 EVKG----AKIKYQCPGCNAEEMMYNTAQLRSADEGQTVFYTCD-CGYK 103
>gi|393235824|gb|EJD43376.1| hypothetical protein AURDEDRAFT_114723 [Auricularia delicata
TFB-10046 SS5]
Length = 126
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
LFC CGT+L +M + V C C + + +I + S+ Q
Sbjct: 13 LLFCPHCGTLLDLPKMNEDTVKCDQCGHVEPSSSYDNIKIVTRSHPDAFP-----SVLRQ 67
Query: 66 PQGDKGETQ---LSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + +T L +VK C C + E Q RSADEG T Y C C HR
Sbjct: 68 KRKTQTQTSGDALLRVKEKCPACGHNEALAKELQLRSADEGSTILYTCADCKHR 121
>gi|337284503|ref|YP_004623977.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
gi|334900437|gb|AEH24705.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
Length = 110
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKR--ELGISLFEQP 66
FC CG+++ + N VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 4 FCPKCGSIMVPDKNKGVFVCRRCGYEEPIN--PEDAKAYRRT-EEVKHRPDEGVIVVEQE 60
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC + E Y+ QTR+ DE T ++ C RCG+
Sbjct: 61 L-----STLPTAKVTCPKCGHNEAYWWELQTRAGDEPSTIFFKCKRCGY 104
>gi|374636197|ref|ZP_09707776.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
gi|373559770|gb|EHP86054.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
Length = 105
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C+ C ++ ++ + +Y + ++ +++ EQ
Sbjct: 4 FCPKCKNIMLPKGGVLKCTVCGYE---MELKEENTTYEFKEKIEHKQPEVTVIEQVD--- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L ++ C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 58 ---TLPTIRIECPKCGHMEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>gi|71421900|ref|XP_811947.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70876670|gb|EAN90096.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 167
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 36/133 (27%)
Query: 10 LFCKFCGTMLRMESNH----VVCSSC-------------------KFKKNVQDVADREIS 46
FC FCGT+L +E +H CSSC KF K V+D A+
Sbjct: 47 FFCPFCGTLLLIEPHHPTNRFACSSCTYVAPIPSTHLLTVNHSLLKFNKTVEDDAN---- 102
Query: 47 YAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTT 106
V A IK + + D G+ + + + C +Y Q RSADE TT
Sbjct: 103 --VKANGIKTK-------NEEVDGGQLITVRCQNDEKFCDGNRAHYVQIQMRSADEPATT 153
Query: 107 YYICPRCGHRCQE 119
++ C +CG + ++
Sbjct: 154 FFKCLKCGFQWKQ 166
>gi|332017465|gb|EGI58188.1| DNA-directed RNA polymerase III subunit RPC10 [Acromyrmex
echinatior]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 16/114 (14%)
Query: 11 FCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC FC +LR N C +C + ++ I + G +
Sbjct: 5 FCPFCANLLRFREHSSGNRFACPTCPYIYPIRSRISSRIYFT----------GKERADII 54
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ + C KC +P Y+ QTRSADE T +Y C C H C +
Sbjct: 55 DAESTWMGVDSTDERCPKCSHPRAYFKQLQTRSADEPMTLFYRC--CNHECAHT 106
>gi|393219008|gb|EJD04496.1| DNA-directed RNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 9 FLFCKFCGTMLRM---ESNHVVCSSCKFKK------NVQDVADREISYAVTAEEIKRELG 59
LFC CGT+L ++ + C C F++ N+ + + KR+
Sbjct: 11 LLFCPDCGTLLDFPTADAEFIPCEQCGFQEKASAYENIVITTRSHLDAFPSVLRQKRKTQ 70
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ E GET++ V C C + E Y +Q RSADEG T Y C C H
Sbjct: 71 TKIHE-----SGETRMI-VNEQCPNCGHDEAYSEEKQMRSADEGSTILYTCVSCRH 120
>gi|429217535|ref|YP_007175525.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
gi|429134064|gb|AFZ71076.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
Length = 124
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
+FC CG++++ + ++VC C +K V Q+ + + ++ I +
Sbjct: 9 MMFCPKCGSLMKPKHIGGKLYLVCPKCGYKTEVDQNSLSNTLKVKEKIQHTPKDKTIVV- 67
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
Q Q+ K C +C N E+ QTR+ADE T +Y C +CG+ +E
Sbjct: 68 -DSQAPPPTAQIVKGSIRCPRCGNDELLAWMIQTRAADEPPTRFYRCTKCGYTWRE 122
>gi|299755285|ref|XP_002912086.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
gi|298411155|gb|EFI28592.1| DNA-directed RNA polymerase I kDa polypeptide [Coprinopsis cinerea
okayama7#130]
Length = 124
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 9 FLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKREL----GIS 61
LFC CGT+L + + V C C ++ + I+ + L
Sbjct: 9 LLFCPNCGTLLDLPKDGEAIVTCEQCHHEEPASSYENIVITTRSHPDAFPSPLQQKRKTL 68
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
QGD+G + V C C + E Y Q RSADEG T +Y C C H
Sbjct: 69 TKRHDQGDQG----TLVAEKCPSCGHMEAYSKEMQLRSADEGSTIFYTCASCKH 118
>gi|15679314|ref|NP_276431.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622419|gb|AAB85792.1| transcription elongation factor TFIIS [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG ++ C C ++K++ D + D+ Y V+ E +E I GD
Sbjct: 35 FCPKCGAVMFPSEGKFKCQ-CGYEKDITDKLKDK---YRVSEEVEAKETIIFT-----GD 85
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T L + C KC N E ++ +QTR ADE +T ++ C RC H +E
Sbjct: 86 DVNT-LPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 134
>gi|402082659|gb|EJT77677.1| hypothetical protein GGTG_02781 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E N ++C C + +D A + + T + L L
Sbjct: 7 LVFCNDCGNLLPASKGSEKNILLCECCGAEN--KDAAAKTVITRSTPADFPSPLRQQLSS 64
Query: 65 QPQGDKGETQLSKV-KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ E + ++ CEKC E+ +S Q RSADEG T +Y C CG+R E+
Sbjct: 65 VQTVKRHELVTEALTQKTCEKCGRKEVRFSAVQLRSADEGSTIFYNC-ECGNRWAEN 120
>gi|358337889|dbj|GAA56216.1| DNA-directed RNA polymerase I subunit RPA12 [Clonorchis sinensis]
Length = 165
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 28/134 (20%)
Query: 11 FCKFCGTML--RME-SNHVVCSSCKFKKNVQDVADREISYAV------------------ 49
FC CGT+L ++E ++ ++C C + E+S+
Sbjct: 27 FCYVCGTLLPHKLEATDSLICRKCHTPTFMHWFNGMEVSFTNELRGRDWSSLQNTDSDYF 86
Query: 50 ------TAEEIKRELGIS-LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+ +K EL + E D+ +++ C C N M Y T QTRSADE
Sbjct: 87 KPMLKRAKKILKSELTLKQALESQYADEPSQDGPSIRKECAYCGNDRMTYVTLQTRSADE 146
Query: 103 GQTTYYICPRCGHR 116
GQT Y C +C +
Sbjct: 147 GQTVIYTCTQCAKK 160
>gi|195430000|ref|XP_002063045.1| GK21590 [Drosophila willistoni]
gi|194159130|gb|EDW74031.1| GK21590 [Drosophila willistoni]
Length = 108
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC CG +L +E S+H+ C +C + ++ + + +E+ LG
Sbjct: 2 LFFCPSCGNLLIIEEDTNSHHLSCHTCPYVSKIRGKISTKTFPRL--KEVDHVLG----- 54
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
G + C C + Y+ QTRSADE TT+Y C C H+C
Sbjct: 55 ---GKAAWENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKC--CNHQC 102
>gi|294495073|ref|YP_003541566.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
gi|292666072|gb|ADE35921.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
Length = 104
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKR-ELGISLFEQPQGD 69
FC C +M+ + C C ++K+ ++ A+ +S + KR E +++ E+ +
Sbjct: 3 FCPKCKSMMFPSDGDLKCRKCGYEKSREEGAETMVS------KTKRDEREVTVLEENVDE 56
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T L++ C +C N + Y+ RQ RSADE +T ++ C +C + +E
Sbjct: 57 GLPTTLAQ----CPECGNNKAYWWMRQLRSADESETRFFKCTKCSYTWRE 102
>gi|159483491|ref|XP_001699794.1| predicted protein [Chlamydomonas reinhardtii]
gi|158281736|gb|EDP07490.1| predicted protein [Chlamydomonas reinhardtii]
Length = 109
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 11 FCKFCGTMLRMESNHV------VCSSCKFKKNVQDVADREIS--YAVTAEEIKRELGISL 62
+C C ML +E C C + N+ D++IS + +++ LG
Sbjct: 4 YCPTCANMLLVELTEYSKELRYFCQCCPYVYNI----DKKISKMAPLARKQVDDVLG--- 56
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ ++K C KC + Y+ QTRSADE T ++ C +C HR +E
Sbjct: 57 -----GEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKCVQCAHRWRE 108
>gi|340516425|gb|EGR46674.1| predicted protein [Trichoderma reesei QM6a]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISL 62
LFC C +L + +N + C +C ++ + D V R + E +RE +
Sbjct: 2 LLFCPHCANILTVSLTINRTNRLECRTCPYEHAITDPVFSRRV-----FERKERE---DV 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P G Q SK + E C E + Q RSADE T+++ C CGHR +E+
Sbjct: 54 FGGP-GAWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKCMTCGHRWREN 110
>gi|195401703|ref|XP_002059452.1| GJ18820 [Drosophila virilis]
gi|194142458|gb|EDW58864.1| GJ18820 [Drosophila virilis]
Length = 108
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E S+ C++C F ++ R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTSSHRFTCNTCPFISKIK----RKISTKTYPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
G + C C + Y+ QTRSADE TT+Y C C H+C
Sbjct: 55 -----GVAAWENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKC--CNHQC 102
>gi|358379290|gb|EHK16970.1| hypothetical protein TRIVIDRAFT_82826 [Trichoderma virens Gv29-8]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISL 62
LFC C +L + +N + C +C ++ + D V R + E +RE +
Sbjct: 2 LLFCPHCANILTVSLTLNRTNRLECRTCPYEHAITDPVFSRRV-----FERKERE---DV 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P G Q SK + E C E + Q RSADE T+++ C CGHR +E+
Sbjct: 54 FGGP-GAWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKCMTCGHRWREN 110
>gi|366988479|ref|XP_003674006.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
gi|342299869|emb|CCC67625.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPLCNNMLLITTADSGVYTLTCRSCPYEFPIEGIEIYDRK---TLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C EKC Y+ Q RSADE TT+Y C C HR +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKCVNCAHRWKEN 110
>gi|255725610|ref|XP_002547734.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135625|gb|EER35179.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 111
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSCK--FKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + + N CS+C FK + + DR+ + +E+ LG
Sbjct: 4 FCPNCSNMLLINTGNDGLNRFYCSTCPYVFKISGLQMYDRK---KLHRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+G + + + C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 57 --GEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 111
>gi|357017157|gb|AET50607.1| hypothetical protein [Eimeria tenella]
Length = 111
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 54 IKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
++ L I L G+K + + CE+C + E ++ST Q RSADEG T Y C +C
Sbjct: 49 LQHHLKIMLSAGDGGNK-----TTCREICERCGHNEAFFSTFQARSADEGMTVMYECTKC 103
Query: 114 GHR 116
HR
Sbjct: 104 HHR 106
>gi|392576975|gb|EIW70105.1| hypothetical protein TREMEDRAFT_29871 [Tremella mesenterica DSM
1558]
Length = 138
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 18/124 (14%)
Query: 9 FLFCKFCGTML---RMESNHVVCSSC-------------KFKKNVQDVADREISYAVTAE 52
LFC CGT+L R + + + C+ C + +N+ + +
Sbjct: 12 LLFCPACGTLLDLPRDDQDEIACAQCGRTEPASCEWIIFRAYENLPTKTFSGPNAFPSPL 71
Query: 53 EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
KR L + + KG +++ K C KC + + Y Q RSADEG T +Y C +
Sbjct: 72 RSKRALVQNTISGQEAAKGRDPIAQEK--CVKCGHIGLSYKEMQLRSADEGSTIFYKCLK 129
Query: 113 CGHR 116
CGH+
Sbjct: 130 CGHQ 133
>gi|328717240|ref|XP_001943300.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Acyrthosiphon pisum]
Length = 119
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L ++ C C + +++V S+ +EI LG
Sbjct: 16 FCPNCSNILHLDEYLGEMRQKCQVCPYFSTIKNVMLASRSF-YKLKEIDSVLG------- 67
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + C C + Y+ QTRSADE T +Y C CGHR +E
Sbjct: 68 -GKNAWENVDSIDVVCNSCNHGRAYFLQVQTRSADEPMTVFYKCCNCGHRWRE 119
>gi|170061184|ref|XP_001866125.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
gi|167879526|gb|EDS42909.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
Length = 108
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 20/119 (16%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAE--EIKRELGISL 62
+FC CG +L +E S C++C + ++ R+IS + + E+ +G
Sbjct: 2 LMFCPTCGNLLLVEEGTDSLRFSCNTCPYICKIK----RKISTRIYPKLKEVDHVMG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C C + Y+ QTRSADE TT+Y C P CGH ++
Sbjct: 55 -----GSAAWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANPVCGHNWRD 108
>gi|378755280|gb|EHY65307.1| DNA-directed RNA polymerase I subunit RPA12 [Nematocida sp. 1
ERTm2]
Length = 94
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C L + S +VCS C KKN + E KR L S Q +
Sbjct: 1 MFCSSCEKYLNICS--LVCSFCG-KKNALKL------------EPKRSLQKSYAMQTTKE 45
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + +K+K C C++ +YY T Q RSADEGQT +Y C CG++
Sbjct: 46 RHKG--AKIKEECPDCKSEYLYYYTMQLRSADEGQTVFYECD-CGYK 89
>gi|288931770|ref|YP_003435830.1| transcription termination factor Tfs [Ferroglobus placidus DSM
10642]
gi|288894018|gb|ADC65555.1| transcription termination factor Tfs [Ferroglobus placidus DSM
10642]
Length = 102
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ + + VC C F+K D ++E + ++ K E+ + E +
Sbjct: 3 FCPKCKSIMIYQGDKAVCRKCGFEK---DAGEKE--FITVSKRNKEEIPVIEEENVK--- 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L C C N E Y+ RQ R+ADE + ++ C +CG +E
Sbjct: 55 ---TLPTTNVICPACGNREAYWWLRQLRAADESEVRFFRCTKCGKTWRE 100
>gi|47211025|emb|CAF94694.1| unnamed protein product [Tetraodon nigroviridis]
Length = 141
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 50/129 (38%), Gaps = 24/129 (18%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L + V C C F V + ++I V ++ + + E+
Sbjct: 6 DLNFCPECGNILPPPGLQDTVRCPRCSFSIPVAEFDGQQIRSTVVLNPAEKSAAV-VEEE 64
Query: 66 PQGDKGETQ---------------------LSKVKRACEKCQNPEMYYSTRQTRSADEGQ 104
+G L ++ R C +C M Y TRQ RSADEGQ
Sbjct: 65 DSDLQGPVVGHGSGSASSGLGAPTSLLTVCLLQIDRRCVRCNKEGMVYHTRQMRSADEGQ 124
Query: 105 TTYYICPRC 113
T ++ C C
Sbjct: 125 TVFFTCVHC 133
>gi|328855592|gb|EGG04718.1| hypothetical protein MELLADRAFT_37278 [Melampsora larici-populina
98AG31]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
F C CG ML + N C SC ++ V ++ DR + ++ +E+ LG
Sbjct: 8 FSSCPTCGNMLVVSRATGENKFECQSCPYEYPVYRNYTDRTV---LSRKEVDDVLG---- 60
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
G++ + + + C KC+N +Y Q RSADE TT+Y C
Sbjct: 61 ----GEEAWKNVDQTEAPCPKCENNRAFYMQLQIRSADEPMTTFYRC 103
>gi|254580487|ref|XP_002496229.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
gi|238939120|emb|CAR27296.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + S+ + C SC ++ ++ +V DR+ + +E+ LG
Sbjct: 4 FCPLCNNMLLIASSDSGIYTLTCKSCPYEFPIEGIEVYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C +KC Y+ Q RSADE TT++ C CG+R +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKCVNCGNRWKEN 110
>gi|150865882|ref|XP_001385273.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
gi|149387138|gb|ABN67244.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC C ML + + N C +C +FK N + +R+ Y +E+ LG
Sbjct: 4 FCPNCSNMLLISAGDDGCNRFYCPTCPYEFKINGLSMFERKKLYR---KEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + C + C + Y+ Q RSADE TT+Y C CGH+ +E+
Sbjct: 57 ----GDGAWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKEN 111
>gi|336275367|ref|XP_003352436.1| hypothetical protein SMAC_01269 [Sordaria macrospora k-hell]
gi|38567336|emb|CAE76624.1| probable DNA-directed RNA polymerase III subunit C11 [Neurospora
crassa]
gi|336465301|gb|EGO53541.1| hypothetical protein NEUTE1DRAFT_133901 [Neurospora tetrasperma
FGSC 2508]
gi|350295598|gb|EGZ76575.1| putative DNA-directed RNA polymerase III subunit C11 [Neurospora
tetrasperma FGSC 2509]
gi|380094324|emb|CCC07703.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 112
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
+FC FC +L + N + C +C ++ + D+ I + + R+ +F
Sbjct: 3 IVFCPFCANLLILSRADTGGNRLECRTCPYEHPI----DKPI---YSRKNFPRKEKEDVF 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q KV+ C E + Q RSADE TT+Y C CGHR +++
Sbjct: 56 GGP-GAWDNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKCMTCGHRWRDN 111
>gi|294658313|ref|XP_460643.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
gi|202953038|emb|CAG88975.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC +C ML M N CS+C +FK + + DR+ ++ +E+ LG
Sbjct: 4 FCPYCANMLIMAQKDDGCNRFFCSTCPYEFKIDGFQMYDRK---KLSRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ + + C + C + Y+ Q RSADE TT+Y C +C H+ +E+
Sbjct: 57 ----GEGAWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCSHQWREN 111
>gi|146419525|ref|XP_001485724.1| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRME-----SNHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLF 63
FC +C ML + N + C++C +FK N + DR+ ++ +++ LG
Sbjct: 4 FCPYCSNMLLVGLSEDGCNRLYCTTCPYEFKINGLQMYDRK---NLSRKQVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + C + C + Y+ Q RSADE TT+Y C +C H+ +E+
Sbjct: 57 ----GDGAWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKCVKCNHQWREN 111
>gi|358398063|gb|EHK47421.1| hypothetical protein TRIATDRAFT_93270 [Trichoderma atroviride IMI
206040]
Length = 110
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISL 62
LFC C +L + +N + C +C ++ + D V R + E +RE +
Sbjct: 2 LLFCPHCANILTVSLTLNRTNRLECRTCPYEHAITDPVFSRRV-----FERKERE---DV 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P G Q SK + E C E + Q RSADE T+++ C CGHR +E+
Sbjct: 54 FGGP-GAWDNAQKSKAQCPNEGCTGEEAAFFQVQIRSADEPMTSFFKCMTCGHRWREN 110
>gi|402223920|gb|EJU03983.1| hypothetical protein DACRYDRAFT_63561 [Dacryopinax sp. DJM-731 SS1]
Length = 108
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + + N C +C ++ + + +E+ LG
Sbjct: 1 MLFCPNCSNILIIAADTGRNKWRCPTCPYEFPIHKQMSSRTR--LKRKEVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
G+ +CEKC N + Y+ Q RSADE TT+Y C R CGH +E+
Sbjct: 54 ---GEAAWKDADSTSASCEKCGNDKAYFMQLQIRSADEPMTTFYRCTRSTCGHNWREN 108
>gi|56753768|gb|AAW25081.1| SJCHGC08580 protein [Schistosoma japonicum]
Length = 116
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+++ C C N M Y T QTRSADEGQT Y C +C +
Sbjct: 73 IRKECAYCGNDRMVYVTLQTRSADEGQTVIYTCTQCAKK 111
>gi|302830955|ref|XP_002947043.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
gi|300267450|gb|EFJ51633.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
Length = 109
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 11 FCKFCGTMLRMESNHV------VCSSCKFKKNVQDVADREIS--YAVTAEEIKRELGISL 62
+C C ML +E C C + ++ D++IS + +++ LG
Sbjct: 4 YCPTCANMLLVELTEYSKELRYFCQCCPYVYSI----DKKISKMAPLARKQVDDVLG--- 56
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GD ++K C KC + Y+ QTRSADE T ++ C +CG+R +E
Sbjct: 57 -----GDDAWKNVAKTDATCSKCAYHQAYFMEIQTRSADEPATLFFKCVQCGYRWRE 108
>gi|449684343|ref|XP_004210603.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Hydra magnipapillata]
Length = 74
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ + + C KC+ + Y+ QTRSADE TT+Y C CGHR +E
Sbjct: 23 GEDAWKNVDSTEEKCPKCEFKKAYFMQIQTRSADEPMTTFYKCCSCGHRWKE 74
>gi|385305484|gb|EIF49450.1| rna polymerase iii c11 subunit [Dekkera bruxellensis AWRI1499]
Length = 112
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 11 FCKFCGTMLRME------SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC +C ML + SN C +C ++ + + E ++EL + +
Sbjct: 4 FCPYCSNMLVVTRSETTGSNTFSCPTCPYEFPIVGLQMFE----------RKELPRKVVD 53
Query: 65 QPQGDKGET-QLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G +G + + C E C + + YY Q RSADE TT+Y C +CGHR +E+
Sbjct: 54 DVLGGEGAWDNVDQTNAQCPVETCGSNKAYYFQIQIRSADEPMTTFYKCCKCGHRWREN 112
>gi|401411477|ref|XP_003885186.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
gi|325119605|emb|CBZ55158.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
Length = 106
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC C ML + + C +C + N+++ R++ +T ++ L E
Sbjct: 3 LFCPTCHNMLLVRQEVTMQFHCQTCPYVFNIKEKLTRKLP--LTPKKADEPLD----EHQ 56
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ +G +K +C KC + E Y+ Q RSADE T +Y C C R +E+
Sbjct: 57 EASRG----AKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCNCRFRWREN 106
>gi|396465380|ref|XP_003837298.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
gi|312213856|emb|CBX93858.1| similar to DNA-directed RNA polymerase I subunit [Leptosphaeria
maculans JN3]
Length = 121
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMESNH-------VVC-SSCKFKKNVQDVADREISYAVTAEEIKRELGI 60
+FC CG +L + +C +SCK + V + + +A KR
Sbjct: 7 LVFCTDCGNLLDGSAGKKNAILTCAICGASCKDTSSKTVVTQSKPTAFPSALRAKRSEVQ 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ E GD T S++ C++C P++ Y T+Q RSADEG T +Y C CGH+
Sbjct: 67 VIVE---GDIQTT--SEIDHPCDECGRPKVRYYTQQLRSADEGSTVFYEC-ECGHK 116
>gi|196010167|ref|XP_002114948.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
gi|190582331|gb|EDV22404.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
Length = 106
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
FC C L ME +C +C + V + +A R ++I LG
Sbjct: 2 LFFCPNCANALYMEKQGECLVFLCHTCPYLYKVTKTIASRNYPKLKQVDDI---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + C KC + + ++ QTRSADE T +Y C CGHR ++
Sbjct: 55 ----GKAAWENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCCSCGHRWKD 106
>gi|443924327|gb|ELU43369.1| transcription factor s-II (TFIIS) domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 129
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 7 RDFLFCKFCGTMLRM---ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
R LFC CGT+L + ++ HV C C + + ++ + L +
Sbjct: 12 RSLLFCPTCGTLLDLPGEDAPHVKCEQCGHLEPASSYENHQVETRSRPDAFPSVLQLKRT 71
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTY 107
Q + +K C KC + E RQ RSADEG T +
Sbjct: 72 TQTKEHLDANVKTKTAETCPKCGHKEALSQERQLRSADEGSTIF 115
>gi|150399491|ref|YP_001323258.1| transcription termination factor Tfs [Methanococcus vannielii SB]
gi|150012194|gb|ABR54646.1| transcription termination factor Tfs [Methanococcus vannielii SB]
Length = 105
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ ++ + C CK + +D+ D SY + + ++ +++ E
Sbjct: 4 FCPKCNNIMLPKNGKLKCVVCKHE---EDIGDANKSYELKEKIETKKQEVTVIENIDT-- 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + C C N E ++ +QTR ADE +T +Y C +C H +E
Sbjct: 59 ----MPITRIECPSCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103
>gi|171684021|ref|XP_001906952.1| hypothetical protein [Podospora anserina S mat+]
gi|170941971|emb|CAP67623.1| unnamed protein product [Podospora anserina S mat+]
Length = 111
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTML---RMES--NHVVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISL 62
LFC +C ML RM++ N V C +C ++ ++ R++ V E+ L
Sbjct: 3 ILFCPYCANMLILSRMDTGGNRVECRTCPYQHAIEKPYYSRKVFPKVEKED--------L 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P Q KV+ + +C E + Q RSADE TT+Y C CG +E+
Sbjct: 55 FGGPDA-WANAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRCLTCGKNWREN 111
>gi|256052454|ref|XP_002569783.1| DNA-directed RNA polymerase I [Schistosoma mansoni]
gi|350646250|emb|CCD59084.1| DNA-directed RNA polymerase I, putative [Schistosoma mansoni]
Length = 236
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 25/134 (18%)
Query: 4 PLGRDFL---FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEE---- 53
PLG + FC CGT+L+ + + +VC CK + ++ + ++ A+
Sbjct: 94 PLGLGRIHRYFCYVCGTLLQHKLEVIDLLVCRKCKTSTCMHWFSNMDATFNTEAKSSKIG 153
Query: 54 -----------IKRELGISLFEQPQGDKGETQLS----KVKRACEKCQNPEMYYSTRQTR 98
++ E+ + + Q + +Q + +++ C C N M Y T QTR
Sbjct: 154 QFNNDEGAKKILRSEIALKEALESQFENSTSQSTFDGPSIRKECAYCGNDRMTYVTVQTR 213
Query: 99 SADEGQTTYYICPR 112
SADEGQT Y C +
Sbjct: 214 SADEGQTVIYTCTQ 227
>gi|46128347|ref|XP_388727.1| hypothetical protein FG08551.1 [Gibberella zeae PH-1]
gi|408394117|gb|EKJ73359.1| hypothetical protein FPSE_06431 [Fusarium pseudograminearum CS3096]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C +L + +N + C +C F+ ++ + Y E ++RE +F
Sbjct: 2 LLFCPHCANILTVSLTSTRTNRLECRTCPFEHHITEPVFSRRLY----ERVERE---DVF 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q + + C E + Q RSADE T+++ C CGHR +E+
Sbjct: 55 GGP-GAWDNAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKCMSCGHRWREN 110
>gi|298714200|emb|CBJ27336.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 108
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 13/116 (11%)
Query: 9 FLFCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC G++L +ES C +C + ++ A+ + + +G
Sbjct: 1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GD + K + C C N E ++ Q RSADE T +Y C C R +E
Sbjct: 57 ----GDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108
>gi|429965409|gb|ELA47406.1| hypothetical protein VCUG_01057 [Vavraia culicis 'floridensis']
Length = 90
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 22/107 (20%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FCK CGT +S +C+ CK R + ++T E+ +L + D
Sbjct: 1 MFCK-CGTYFSGDS---ICTVCK---------SRPVKKSITYEKY-----YTLKPKVNTD 42
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+++V C KC + +MYY Q RSADEGQT +Y C +CG++
Sbjct: 43 DRGAMIAQV---CAKCGSEKMYYKAVQLRSADEGQTIFYEC-KCGYK 85
>gi|392300156|gb|EIW11247.1| Rpc11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + S + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPSCNNMLLITSGDNGVYTLACRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CGHR +E+
Sbjct: 57 ------GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>gi|301096910|ref|XP_002897551.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262107011|gb|EEY65063.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 105
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + C +C + + D ++++ + +++ LG
Sbjct: 3 FCPSCGNILLVEPDSDGMRFFCQTCPYLFQINDKVEKKV--PLQRKQVDDVLG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GD+ + + + C C+ + Y+ Q RSADE TT+Y C +C
Sbjct: 54 -GDEAWENVDQTETRCPHCEYNKAYFMQIQIRSADEPSTTFYKCVQC 99
>gi|448340694|ref|ZP_21529664.1| transcription factor S [Natrinema gari JCM 14663]
gi|445629634|gb|ELY82910.1| transcription factor S [Natrinema gari JCM 14663]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +VC++ + +RE ++ T + ++ E +
Sbjct: 3 FCDDCGSMMKARGDRMVCTNDDCGAASERDREREDAFVTTESQTDGDV----IESSEEAN 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E + C++C E +Y+ +QT SADE T ++ C C ++ +E
Sbjct: 59 FEGKPKATDVVCDECGAEEAWYTLKQTASADEPPTRFFKCTDCKNKWRE 107
>gi|387597348|gb|EIJ94968.1| hypothetical protein NEPG_00493 [Nematocida parisii ERTm1]
Length = 96
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C L S ++C+ C K ++ + R + + +K E+ +G
Sbjct: 1 MFCSSCEKYLNAYS--MLCNFCNKKNTLKLDSKRTLEKTYVQKTVK--------ERHKG- 49
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+K+K C +C++ +YY T Q RSADEGQT +Y C CG++
Sbjct: 50 ------AKIKEECPECRSEYLYYYTMQLRSADEGQTVFYECD-CGYK 89
>gi|6320250|ref|NP_010330.1| Rpc11p [Saccharomyces cerevisiae S288c]
gi|3334319|sp|Q04307.1|RPC10_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|798898|emb|CAA89076.1| unknown [Saccharomyces cerevisiae]
gi|4210977|gb|AAD12060.1| RNA polymerase III C11 subunit [Saccharomyces cerevisiae]
gi|45269165|gb|AAS55962.1| YDR045C [Saccharomyces cerevisiae]
gi|151942036|gb|EDN60392.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190404984|gb|EDV08251.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|256270826|gb|EEU05973.1| Rpc11p [Saccharomyces cerevisiae JAY291]
gi|259145290|emb|CAY78554.1| Rpc11p [Saccharomyces cerevisiae EC1118]
gi|285811069|tpg|DAA11893.1| TPA: Rpc11p [Saccharomyces cerevisiae S288c]
gi|349577114|dbj|GAA22283.1| K7_Rpc11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|401626309|gb|EJS44261.1| rpc11p [Saccharomyces arboricola H-6]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + S + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CGHR +E+
Sbjct: 57 ------GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>gi|387593689|gb|EIJ88713.1| hypothetical protein NEQG_01403 [Nematocida parisii ERTm3]
Length = 94
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C L S ++C+ C K ++ + R + + +K E+ +G
Sbjct: 1 MFCSSCEKYLNAYS--MLCNFCNKKNTLKLDSKRTLEKTYVQKTVK--------ERHKG- 49
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+K+K C +C++ +YY T Q RSADEGQT +Y C CG++
Sbjct: 50 ------AKIKEECPECRSEYLYYYTMQLRSADEGQTVFYECD-CGYK 89
>gi|195029411|ref|XP_001987566.1| GH19894 [Drosophila grimshawi]
gi|193903566|gb|EDW02433.1| GH19894 [Drosophila grimshawi]
Length = 108
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 22/116 (18%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELG-IS 61
FC CG +L +E S+ C +C F ++ R+I+ +E+ LG I+
Sbjct: 2 LFFCPSCGNILIIEEDTSSHRFTCHTCPFISKIK----RKITTKTFPRLKEVDHVLGGIA 57
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+E E C C + Y+ QTRSADE TT+Y C C H+C
Sbjct: 58 AWENVDSTDAE---------CPACSHKRAYFMQIQTRSADEPMTTFYKC--CNHQC 102
>gi|428673070|gb|EKX73983.1| conserved hypothetical protein [Babesia equi]
Length = 265
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 55 KRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
K + +L + K Q VK+ CEKC + +ST Q RSADEG + Y C +CG
Sbjct: 201 KSHMNSALLDAKSAKKSGKQ--TVKQICEKCGHDTHTFSTFQARSADEGMSVMYECTKCG 258
Query: 115 HR 116
+R
Sbjct: 259 NR 260
>gi|223995705|ref|XP_002287526.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976642|gb|EED94969.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 9 FLFCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
+ FC C L + ++ V CS C N+ ++ + T + + L+ +
Sbjct: 3 WPFCPDCHNTLTVNASGTVRCSVCNHTTNLSAYSESTLPSRTTTSADR---PVPLWAKSD 59
Query: 68 GDKGETQ-LSKVKR-----ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
++ + LS+ KR C KC E+ + T Q RS DEGQT +Y CP+C +
Sbjct: 60 EEQAALRTLSEPKRMVVEEPCVKCGAGEVGFYTVQLRSVDEGQTVFYECPKCSY 113
>gi|290985184|ref|XP_002675306.1| predicted protein [Naegleria gruberi]
gi|284088901|gb|EFC42562.1| predicted protein [Naegleria gruberi]
Length = 109
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 21/119 (17%)
Query: 10 LFCKFCGTMLRMESN---------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI 60
FC CG +L +E VC +C + N++ E+ + + E K+E+
Sbjct: 2 FFCPQCGNILLIEKAAGRSTDSVYRWVCKTCPYICNIK----SEMYFDMNLE--KKEVDD 55
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + + ET V+ C KC + + Y+ QTRSADE T ++ C +CGH+ +E
Sbjct: 56 VI--DDEANWSET----VETKCGKCDHNKAYFQMFQTRSADEPMTQFFKCCKCGHQWKE 108
>gi|440493689|gb|ELQ76126.1| RNA polymerase I transcription factor TFIIS, subunit A12.2/RPA12
[Trachipleistophora hominis]
Length = 151
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 28/110 (25%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEE---IKRELGISLFEQP 66
+FCK CGT +S +C+ CK R I ++T E+ +K ++
Sbjct: 62 MFCK-CGTYFFTDS---ICTVCK---------SRPIKESITYEKYYTLKPKVN------- 101
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D+G + + + C KC + +MYY Q RSADEGQT +Y C CG++
Sbjct: 102 TDDRG----AMIAQVCVKCGSEKMYYKAVQLRSADEGQTIFYEC-ECGYK 146
>gi|448825537|ref|YP_007418468.1| transcription factor S-II-related protein [Megavirus lba]
gi|371943903|gb|AEX61731.1| transcription factor S-II-related protein [Megavirus courdo7]
gi|425701469|gb|AFX92631.1| transcription factor S-II-related protein [Megavirus courdo11]
gi|444236722|gb|AGD92492.1| transcription factor S-II-related protein [Megavirus lba]
Length = 170
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+AC C+N E +Y QTRSADE TT+YIC +C
Sbjct: 129 KACRACKNTEYFYRQLQTRSADEPITTFYICKKCS 163
>gi|367006795|ref|XP_003688128.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
gi|357526435|emb|CCE65694.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSCKFKKNVQD--VADREISYAVTAEEIKRELGISLF 63
FC C ML + + + + C SC ++ +++ V DR+ + +EI LG
Sbjct: 4 FCPLCNNMLLISNADSSVHKLTCHSCPYEFPIENIEVYDRK---KLERKEIDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C +KC Y+ Q RSADE TT+Y C CG R +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKCVNCGKRWKEN 110
>gi|363540774|ref|YP_004894614.1| mg563 gene product [Megavirus chiliensis]
gi|350611939|gb|AEQ33383.1| transcription factor S-II-related protein [Megavirus chiliensis]
Length = 170
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+AC C+N E +Y QTRSADE TT+YIC +C
Sbjct: 129 KACRACKNTEYFYRQLQTRSADEPITTFYICKKCS 163
>gi|330834287|ref|YP_004409015.1| DNA-directed RNA polymerase subunit M [Metallosphaera cuprina Ar-4]
gi|329566426|gb|AEB94531.1| DNA-directed RNA polymerase, subunit M [Metallosphaera cuprina
Ar-4]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 11 FCKFCGTML--RMESNHVV--CSSCKFKKNVQDVADRE--ISYAVTAEEIKRELGISLFE 64
FC C +M+ R + +V+ C C + +D R IS V E +R + + E
Sbjct: 3 FCPKCKSMMTPRKINGNVIYKCVKCGY----EDEGPRSQIISSKVKHSETERTI---VIE 55
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
Q G ++ V C KC N E+Y+ QTR+ADE T +Y C RCG +E
Sbjct: 56 DQQLPAGTQKMRGV--LCSKCGNDEVYFWMLQTRAADEPPTRFYKCTRCGKVWRE 108
>gi|6723838|emb|CAB66386.1| archaeal transcription factor S [Methanothermococcus
thermolithotrophicus]
Length = 105
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ ++ + C+ C F+ +++ +R Y + + ++ +++ E
Sbjct: 4 FCPKCNNIMLPKNGRLKCTVCGFE---EELGNRTEEYELKEKIEAKKQEVTVIEDVD--- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C C N E + +QTR ADE +T +Y C +CGH +E
Sbjct: 58 ---TLPTTRIECPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>gi|255072375|ref|XP_002499862.1| predicted protein [Micromonas sp. RCC299]
gi|226515124|gb|ACO61120.1| predicted protein [Micromonas sp. RCC299]
Length = 109
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 11 FCKFCGTMLRME------SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC C ML ++ + C +C ++ + + I + +++ LG
Sbjct: 4 FCPHCANMLLVDHCPEGGGLKLYCQTCPYEHAITETIRDPIK--IARKQVDDVLG----- 56
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + K C KC + + Y+ Q RSADE +T+Y C +C ++ +E
Sbjct: 57 ---GDDAWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCCKCANQWREG 109
>gi|348679513|gb|EGZ19329.1| hypothetical protein PHYSODRAFT_491179 [Phytophthora sojae]
Length = 105
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + C +C + + D ++++ + +++ LG
Sbjct: 3 FCPSCGNILLVEPDSDGMRFFCQTCPYLFQINDKVEKKV--PLQRKQVDDVLG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GD+ + + + C C+ + Y+ Q RSADE TT+Y C +C
Sbjct: 54 -GDEAWENVDQTETRCPHCEFNKAYFMQIQIRSADEPSTTFYKCVQC 99
>gi|304315435|ref|YP_003850582.1| DNA-directed RNA polymerase, subunit M [Methanothermobacter
marburgensis str. Marburg]
gi|302588894|gb|ADL59269.1| predicted DNA-directed RNA polymerase, subunit M
[Methanothermobacter marburgensis str. Marburg]
Length = 104
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG ++ C C ++K++ D + +++ EE++ + + GD
Sbjct: 3 FCPKCGAVMFPAKGKFSCQ-CGYEKDITDKLKDKYNFS---EEVESKDNVIF----TGDD 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T L + C KC N E ++ +QTR ADE +T ++ C RC + +E
Sbjct: 55 VST-LPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKYTWRE 102
>gi|14590548|ref|NP_142616.1| DNA-directed RNA polymerase subunit M [Pyrococcus horikoshii OT3]
gi|3257072|dbj|BAA29755.1| 110aa long hypothetical transcription-associated protein
[Pyrococcus horikoshii OT3]
Length = 110
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EEIK + G+ + EQ
Sbjct: 4 FCPRCGSIMIPDKKRGVFVCRKCGYEEPIN--PEDAKAYRRT-EEIKHKPDEGVIVIEQ- 59
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC E +Y QTR+ DE T +Y C RCG+
Sbjct: 60 ----DFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKCKRCGY 104
>gi|407037073|gb|EKE38471.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 107
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + CS+C +K +++I Y E+KR+ ++ +
Sbjct: 3 FFCANCGNLLVVERGTELYFKCSTCPYKFTF----NKKIVYE---SELKRKQIDAVLGEE 55
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
Q + K + CEKC + Y+ Q RSADE TT+Y C CG++ ++
Sbjct: 56 QWKNAQ----KTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107
>gi|409042226|gb|EKM51710.1| hypothetical protein PHACADRAFT_212338 [Phanerochaete carnosa
HHB-10118-sp]
Length = 106
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + + N C++C ++ + + +++ LG
Sbjct: 1 MLFCPSCANLLVISTETGYNKWACNTCAYEFPITKQMTSRTR--LERKQVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD +C KC + Y+ Q RSADE TT++ C CGH+ +E+
Sbjct: 54 ---GDDMWKHADSTAASCPKCDHGRAYFYMLQIRSADEPMTTFFRCAACGHQWREN 106
>gi|195119552|ref|XP_002004295.1| GI19850 [Drosophila mojavensis]
gi|193909363|gb|EDW08230.1| GI19850 [Drosophila mojavensis]
Length = 108
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELG-IS 61
FC CG +L +E S+ C++C F ++ R+I+ +E+ LG ++
Sbjct: 2 LFFCPSCGNILIIEEDTSSHRFTCNTCPFISKIK----RKITTKTYPRLKEVDHVLGGVA 57
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+E E C C + Y+ QTRSADE TT+Y C C H+C
Sbjct: 58 AWENVDSTDAE---------CPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHQC 102
>gi|385806138|ref|YP_005842536.1| DNA-directed RNA polymerase subunit M [Fervidicoccus fontis Kam940]
gi|383796001|gb|AFH43084.1| DNA-directed RNA polymerase, subunit M [Fervidicoccus fontis
Kam940]
Length = 104
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 75 LSKVKRA--CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L K+K C KC N E+YY T QTR+ADE T +Y C +CG+ +E
Sbjct: 56 LPKLKDVVYCPKCGNNEVYYWTMQTRAADEPPTRFYKCTKCGYVWRE 102
>gi|83768952|dbj|BAE59089.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391865717|gb|EIT74996.1| hypothetical protein Ao3042_09099 [Aspergillus oryzae 3.042]
Length = 122
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESNHVV-CSSC-KFKKNVQDVADREISYAVTAEEIKREL 58
+ D R +C CG++L + C C K KN + +++ ++
Sbjct: 7 LLDHFSRVVQYCDICGSLLDESPEETLQCELCGKLAKNTVFFHTQTTVSENFPSKLRNKM 66
Query: 59 GISLFEQPQGDK---GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
S E+ D+ G T ++ C KC + ++ YS Q RSADEG T +Y C +CGH
Sbjct: 67 K-SFTEKATRDELGPGPT----IEVDCVKCPSKDVTYSQVQLRSADEGSTIFYNCLKCGH 121
Query: 116 R 116
R
Sbjct: 122 R 122
>gi|327299404|ref|XP_003234395.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326463289|gb|EGD88742.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 116
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
L C CGT R ++ + S K + + + AE+ K++ +
Sbjct: 27 ILTCDICGTQNRDHASRTIVSESKPSAFPSSLRSKSSAVRTLAEQRKQDDAV-------- 78
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
++ C C EM Y T Q RSADEG T +Y C CGH+
Sbjct: 79 ---------IQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC-ECGHK 116
>gi|340058056|emb|CCC52409.1| putative RNA polymerase III C11 subunit [Trypanosoma vivax Y486]
Length = 126
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 10 LFCKFCGTMLRMES----NHVVCSSC----------------KFKKNVQDVADREISYAV 49
FC FCGT+L +E N CSSC F++ + V D +
Sbjct: 2 FFCPFCGTLLLIEPHQTLNRFSCSSCDYVVPILSQEPLTVNHSFRQYNKVVDDYHVKPNK 61
Query: 50 TAE--EIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTY 107
AE +IK E G+ D G+ + + ++C + + Y Q RSADE TT+
Sbjct: 62 DAEGNDIKGEEGV--------DGGQVITVQCQNDEKQCDSNKALYVQIQMRSADEPATTF 113
Query: 108 YICPRCGHRCQE 119
+ C +CG + ++
Sbjct: 114 FKCLKCGFQWKQ 125
>gi|440291488|gb|ELP84757.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
invadens IP1]
Length = 107
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + CS+C +K +++I Y + K++L L E+
Sbjct: 3 FFCANCGNLLVVEDGTELYFKCSTCPYKFTF----NKKIVYESVLK--KKQLDAVLGEEQ 56
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
+ +T ++ CEKC + Y+ Q RSADE TT+Y C CG + ++
Sbjct: 57 WKNAQKTDIN-----CEKCGFGQAYFMQIQIRSADEPMTTFYKCANYDCGFQWRDG 107
>gi|444323471|ref|XP_004182376.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
gi|387515423|emb|CCH62857.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
Length = 111
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 11 FCKFCGTMLRMESNH------VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISL 62
FC C ML + ++ + C SC ++ +Q ++ DR+ + +E+ LG
Sbjct: 4 FCPLCNNMLLIATSQTENVYTLTCKSCPYEFPIQGIEIFDRK---KLPRKEVDDVLG--- 57
Query: 63 FEQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + K C + C Y+ Q RSADE TT+Y C CG+R +E
Sbjct: 58 -------GGWDNVDQTKVQCPNYDNCGGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKE 110
Query: 120 S 120
+
Sbjct: 111 N 111
>gi|156937645|ref|YP_001435441.1| DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis
KIN4/I]
gi|156566629|gb|ABU82034.1| DNA-directed RNA polymerase, subunit M [Ignicoccus hospitalis
KIN4/I]
Length = 113
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 11 FCKFCGTML---RMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+++ R+ ++ C C ++ V S TA++I+ +
Sbjct: 3 FCPKCGSLMVARRVGGKTILKCMRCGYEMEVTGAQ----STLRTAKKIRHSVKEKTVVID 58
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K ET C KC + E YY QTR+ DE T +Y C RCGH +E
Sbjct: 59 NNIKVETLPKTRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKCTRCGHVWRE 111
>gi|448502568|ref|ZP_21612681.1| transcription factor TFIIS [Halorubrum coriense DSM 10284]
gi|445694063|gb|ELZ46198.1| transcription factor TFIIS [Halorubrum coriense DSM 10284]
Length = 97
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 28/120 (23%)
Query: 1 MADPLGRDFLFCKFCGTMLRMESNHVVCSS-CKFKKNVQDVADREISYAVTAEEIKRELG 59
M G D C CG + ES+ ++ + + V DV+D E
Sbjct: 2 MKSGAGEDHWVCDSCGHEIGRESDDSEWTTQSQVESEVVDVSDAE--------------- 46
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
DKG L C +C N Y+ +Q RSADE +T +++C C H+ +E
Sbjct: 47 ---------DKG---LPTTTAQCPECDNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 94
>gi|339522113|gb|AEJ84221.1| DNA-directed RNA polymerase III subunit K [Capra hircus]
Length = 108
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + +N+ + V +R+ +E++ LG
Sbjct: 2 LLFCPGCGNGLIVEEGPRCHRFACNTCPYVRNLTRKVTNRKYP---KLKEVEDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + K ++P Y+ QTR ADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPWPKGEHPRAYFMQLQTRCADEPMTTFYKCGNAQCGHRWRD 108
>gi|351714373|gb|EHB17292.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 111
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 18/112 (16%)
Query: 15 CGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLFEQPQGD 69
CG L +E +H C++C + N+ + V +R+ +E+ LG G
Sbjct: 11 CGNGLIVEEGQRCHHFACNTCPYMHNITRKVTNRKYP---KLKEVDDVLG--------GS 59
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
+ C + ++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 60 AAWENVDSTAEPCLRFEHPRAYFMQLQTRSADELMTTFYKCCNAQCGHRWRD 111
>gi|448346174|ref|ZP_21535062.1| transcription factor S [Natrinema altunense JCM 12890]
gi|445633184|gb|ELY86384.1| transcription factor S [Natrinema altunense JCM 12890]
Length = 109
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +VC++ + + DRE A E + + + + +
Sbjct: 3 FCDDCGSMMKARGDQMVCTNDDCGASSE--RDREQEDAFVTTESQTDGDVIESSEEANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ + + V C++C E +Y+ +QT SADE T ++ C C ++ +E
Sbjct: 61 GKPKATDV--ICDECGAEEAWYTLKQTASADEPPTRFFKCTECKNKWRE 107
>gi|18313781|ref|NP_560448.1| putative DNA-directed RNA polymerase subunit M [Pyrobaculum
aerophilum str. IM2]
gi|18161340|gb|AAL64630.1| DNA-directed RNA polymerase subunit M [Pyrobaculum aerophilum str.
IM2]
Length = 110
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 11/94 (11%)
Query: 28 CSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVK-RACEKC 85
C C +++ V QDV +R S TA E + + + P L KVK R C KC
Sbjct: 24 CPKCGYEEEVSQDVKNRYQSK--TAVESRNSVIVVADTTPN-------LPKVKTRGCPKC 74
Query: 86 QNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ E Y +QTR+ADE T +Y C +CG+ +E
Sbjct: 75 GHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>gi|261350637|ref|ZP_05976054.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|288861420|gb|EFC93718.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAE-EIKRELGISLFEQPQG 68
FC CG +L + + C C ++K++ D V D+ Y V E K E+ ++
Sbjct: 3 FCPECGAILLPMNKKLKCK-CGYEKSLSDEVKDQ---YEVKGETNPKAEIIVT------- 51
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
D L C KC + Y+ T QTRSADE T + C +CG+ + S
Sbjct: 52 DNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCAKCGNTWRSS 103
>gi|326432185|gb|EGD77755.1| hypothetical protein PTSG_08844 [Salpingoeca sp. ATCC 50818]
Length = 116
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 8 DFLFCKFCGTMLRM--ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG +L ++N + C C V I V R +
Sbjct: 8 DRNFCVRCGALLPTFGDNNTISCRRCGHGVPVT------IFENVKVRSSSRPYAFQKPDY 61
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ E + + C KC EM Y+T Q RSADEGQT +Y C +CG+
Sbjct: 62 NTSKEVEDTAATIDEKCPKCGREEMSYTTAQLRSADEGQTIFYRC-KCGY 110
>gi|150402598|ref|YP_001329892.1| transcription termination factor Tfs [Methanococcus maripaludis C7]
gi|159905627|ref|YP_001549289.1| transcription termination factor Tfs [Methanococcus maripaludis C6]
gi|150033628|gb|ABR65741.1| transcription termination factor Tfs [Methanococcus maripaludis C7]
gi|159887120|gb|ABX02057.1| transcription termination factor Tfs [Methanococcus maripaludis C6]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ ++ + C CK + +++ D YA+ + ++ +++ E
Sbjct: 4 FCPKCNNIMLPKAGVLKCVVCKHE---EELGDANQEYALKEKIESKKQDVTVIENVDT-- 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C C N E ++ +QTR ADE +T +Y C +C H +E
Sbjct: 59 ----LPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103
>gi|156843581|ref|XP_001644857.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156115509|gb|EDO16999.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 110
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESN-----HVVCSSCKFKKNVQDVA--DREISYAVTAEEIKRELGISLF 63
FC C ML + ++ ++ C SC ++ +++V DR+ + +EI LG
Sbjct: 4 FCPLCNNMLLVATSDSGIYNLSCRSCPYEFPIENVEIYDRK---ELERKEIDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CG+R +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKEN 110
>gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
gi|4309697|gb|AAD15481.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|7267434|emb|CAB77946.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|18253033|gb|AAL62443.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|23198220|gb|AAN15637.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332657185|gb|AEE82585.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
Length = 106
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CG +LR E S+ CS+C + N++ E K++L + +P
Sbjct: 3 FCPTCGNLLRYEGGGSSRFFCSTCPYVANIER----------RVEIKKKQLLVKKSIEPV 52
Query: 68 GDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
K + + A C +C + + Y+ + Q RSADE ++ +Y C +C
Sbjct: 53 VTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKC 99
>gi|340345736|ref|ZP_08668868.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520877|gb|EGP94600.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 103
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ + + C C + + + + + + V EE S F ++
Sbjct: 3 FCPKCEVKLKKGDSGLQCPKCNYVEGNETMQTKTV---VEEEE-------SQFNVLAENE 52
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
G L +K CEKC N E + QTRSADE T +Y C +C +
Sbjct: 53 GTETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCSKCRY 97
>gi|410074205|ref|XP_003954685.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
gi|372461267|emb|CCF55550.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
Length = 110
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPVCNNMLLVSLADSGIYTLKCHSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C +KC Y+ Q RSADE TT+Y C CGHR +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>gi|428163567|gb|EKX32631.1| hypothetical protein GUITHDRAFT_82143, partial [Guillardia theta
CCMP2712]
Length = 49
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 72 ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
E +++ C++C + YY + Q RS DEGQTT++ C RCGH
Sbjct: 1 EEHRPQMEEKCDECGYTKAYYWSAQVRSMDEGQTTFFECVRCGH 44
>gi|45358992|ref|NP_988549.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
S2]
gi|340624740|ref|YP_004743193.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
gi|45047867|emb|CAF30985.1| Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa
subunit [Methanococcus maripaludis S2]
gi|339905008|gb|AEK20450.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
Length = 105
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C CK + +++ D YA+ + ++ +++ E
Sbjct: 4 FCPKCNNIMLPKGGVLKCVVCKHE---EELGDANQEYALKEKIESKKQDVTVIENVD--- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C C N E ++ +QTR ADE +T +Y C +C H +E
Sbjct: 58 ---TLPTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103
>gi|389645943|ref|XP_003720603.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|86196830|gb|EAQ71468.1| hypothetical protein MGCH7_ch7g875 [Magnaporthe oryzae 70-15]
gi|351637995|gb|EHA45860.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|440472131|gb|ELQ41014.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
Y34]
gi|440479564|gb|ELQ60324.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
P131]
Length = 110
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C +L + + N + C +C ++ + + + +E R+ +F
Sbjct: 2 LLFCPSCANVLTVSAMETGKNRLECRTCPYEFAINEPL-------FSRKEFARKEREDVF 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
P G Q +V+ + C E + Q RSADE T++Y C CGHR +E+
Sbjct: 55 GGP-GAWDNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKCMTCGHRWREN 110
>gi|388858092|emb|CCF48329.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Ustilago hordei]
Length = 109
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 15/107 (14%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C L ++ +N C +C ++ + I T + +KR+ +
Sbjct: 1 MLFCPTCANCLIIQLDDHGNNKWSCHTCPYEFPI-------IQQMTTRQHLKRK---EVD 50
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+ G++ + + C KC+NP+ ++ Q RSADE TT+Y C
Sbjct: 51 DVMGGEESWKNVDSIDAPCPKCENPKAFFMQLQIRSADEPMTTFYRC 97
>gi|260941386|ref|XP_002614859.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851282|gb|EEQ40746.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 111
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC +C ML + N + C +C ++ + E + +++ LG
Sbjct: 4 FCPYCSNMLLVSQGEDNCNRLYCPTCPYEFRISGFQMFERK-MLPRKDVDDVLG------ 56
Query: 66 PQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + C + C N + Y+ Q RSADE TT+Y C +C H+ +E+
Sbjct: 57 --GDGAWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKCTKCSHQWREN 111
>gi|410722289|ref|ZP_11361595.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
gi|410597324|gb|EKQ51951.1| transcription factor S, archaeal [Methanobacterium sp. Maddingley
MBC34]
Length = 104
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 13/111 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNV--QDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CGT+L + + CS C ++K + + +++ EIS V +E + ++ G
Sbjct: 3 FCPKCGTVLFPKGDCFECS-CGYQKKITKESLSEYEISEKVAPKE---NVIVT------G 52
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D +T L K C KC N ++ +QTR ADE +T + C CG +E
Sbjct: 53 DDVKT-LPTTKALCPKCGNRLAFWWLQQTRRADESETRFLRCTECGQTWRE 102
>gi|14521579|ref|NP_127055.1| DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
gi|5458798|emb|CAB50285.1| tfs archaeal transcription factor S [Pyrococcus abyssi GE5]
gi|380742189|tpe|CCE70823.1| TPA: DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
Length = 110
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 4 FCPKCGSIMIPDKKRGVFVCRRCGYEEPIN--PEDAKAYKRT-EEVKHKPDEGVIVVEQ- 59
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC E +Y QTR+ DE T +Y C RCG+
Sbjct: 60 ----DFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKCKRCGY 104
>gi|284161918|ref|YP_003400541.1| transcription termination factor Tfs [Archaeoglobus profundus DSM
5631]
gi|284011915|gb|ADB57868.1| transcription termination factor Tfs [Archaeoglobus profundus DSM
5631]
Length = 101
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+ + +++ VC + + E + E I + E ++
Sbjct: 3 FCPKCGSFMILKNGKFVCRK-------CEYEEESEKKEFVIESKRNENEIPVIE----ER 51
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
ET L K + C C N E Y+ RQ R+ADE +T +Y C +CG +E
Sbjct: 52 IET-LPKTRVVCPYCGNTEAYWWIRQMRAADEPETRFYRCTKCGKTWRE 99
>gi|312375718|gb|EFR23030.1| hypothetical protein AND_28749 [Anopheles darlingi]
Length = 108
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 20/115 (17%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAV--TAEEIKRELGISL 62
+FC CG +L +E S C++C + ++ R+IS + +E+ +G
Sbjct: 2 LMFCPTCGNLLLVEESTDSLRFSCNTCPYICKIK----RKISTRIYPKLKEVDHVMG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGH 115
G + C C N Y+ QTRSADE TT+Y C CGH
Sbjct: 55 -----GAAAWENVDSTDAVCPACGNARAYFMQMQTRSADEPMTTFYKCCEQTCGH 104
>gi|222444789|ref|ZP_03607304.1| hypothetical protein METSMIALI_00402 [Methanobrevibacter smithii
DSM 2375]
gi|222434354|gb|EEE41519.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
Length = 104
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAE-EIKRELGISLFEQPQG 68
FC CG +L + + C C ++K++ D V D+ Y V E K E+ ++
Sbjct: 3 FCPECGAILLPMNKKLKCK-CGYEKSLSDEVKDQ---YEVKGETNPKAEVIVT------- 51
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
D L C KC + Y+ T QTRSADE T + C +CG+ + S
Sbjct: 52 DNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCAKCGNTWRSS 103
>gi|390603169|gb|EIN12561.1| hypothetical protein PUNSTDRAFT_97332 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + N C++C ++ + + +E+ LG
Sbjct: 1 MLFCPTCANLLVISQETGYNKWACNTCPYEFPITKQMTSRTK--LKRKEVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD+ C KC + Y+ Q RSADE TT+Y C CG++ +E+
Sbjct: 54 ---GDQMWEHADATSATCPKCDHGRAYFYQLQIRSADEPMTTFYRCAACGNQWREN 106
>gi|448337038|ref|ZP_21526122.1| transcription factor S [Natrinema pallidum DSM 3751]
gi|445626870|gb|ELY80207.1| transcription factor S [Natrinema pallidum DSM 3751]
Length = 109
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ + +VC++ + DRE A E + + + + +
Sbjct: 3 FCDDCGSMMKARGDRMVCTNDDC--GASNERDREQEDAFVTTESQTDGDVIESSEEANFE 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G+ + + V C++C E +Y+ +QT SADE T ++ C C ++ +E
Sbjct: 61 GKPKATDV--ICDECGAEEAWYTLKQTASADEPPTRFFKCTDCKNKWRE 107
>gi|449066209|ref|YP_007433291.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449068485|ref|YP_007435566.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
gi|73920769|sp|Q07271.2|RPOM_SULAC RecName: Full=DNA-directed RNA polymerase subunit M
gi|449034717|gb|AGE70143.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449036993|gb|AGE72418.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
Length = 111
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 11 FCKFCGTML--RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+M+ R E+ V CS C + + +E + +E + L +
Sbjct: 3 FCPKCGSMMMPRKENGKTVYKCSKCGY---IDTENQKEAKITTVIKHSAKEKTLVL--ES 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K QL++ +C C N E Y+ QTRSADE T +Y C +CG +E
Sbjct: 58 DMPKTGVQLTR-GISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>gi|392585297|gb|EIW74637.1| hypothetical protein CONPUDRAFT_113195 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + + N C++C ++ + + +++ LG
Sbjct: 1 MLFCPTCANLLVISAETGYNKWACNTCAYEFPITKQMTSRTK--MKRKQVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD+ +C+KC + Y+ Q RSADE TT+Y C CG+ +E+
Sbjct: 54 ---GDEMWKHADSTAISCDKCNHGRAYFYQLQIRSADEPMTTFYRCAGCGYNWREN 106
>gi|121710080|ref|XP_001272656.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus clavatus NRRL 1]
gi|119400806|gb|EAW11230.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus clavatus NRRL 1]
Length = 147
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSC--KFKKNVQD--VADREISYAVTAEEIKRELGI 60
+FC CG +L + ++C C + K V + V++ + + +A KR
Sbjct: 7 LIFCTDCGNLLPESTGDPTKVLLCDVCGARNKDTVPNTIVSESKPNAFPSALRAKRSAVQ 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+L + + + TQ C +C EMY++T Q RSADEG T +Y C CG++
Sbjct: 67 TLTAEDKRTEALTQ-----HTCARCGRKEMYFTTVQLRSADEGSTVFYTC-VCGYK 116
>gi|389627238|ref|XP_003711272.1| hypothetical protein MGG_07394 [Magnaporthe oryzae 70-15]
gi|351643604|gb|EHA51465.1| hypothetical protein MGG_07394 [Magnaporthe oryzae 70-15]
Length = 115
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG L + N V C N + + VT R+ L + G+K
Sbjct: 5 FCNDCGDTLPISGNPEVKCDCCGNMNKNTLIN------VTTVSSSRDFDSPLRLKEYGNK 58
Query: 71 G------ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
E + C C + + Y+T QTR ADEG T +Y C C + +E+
Sbjct: 59 DAMASRPEMNWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGCSQKWKEN 114
>gi|325187761|emb|CCA22306.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 105
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L +E N C +C + ++ ++ + + +++ LG
Sbjct: 3 FCPSCANLLLVEPNSEGMRFFCQTCPYLYQIESRIEKHVQ--LQRKQVDDVLG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GD+ + + + C C++ Y+ Q RSADE TT+Y C +C
Sbjct: 54 -GDEAWDNVDQTEVRCPHCEHNHAYFMQIQIRSADEPSTTFYKCVQC 99
>gi|134045195|ref|YP_001096681.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
C5]
gi|132662820|gb|ABO34466.1| DNA-directed RNA polymerase, subunit M [Methanococcus maripaludis
C5]
Length = 105
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C CK + +++ D YA+ + ++ +++ E
Sbjct: 4 FCPKCNNIMLPKGGVLKCVVCKHE---EELGDANQEYALKEKIESKKQDVTVIENVD--- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C C N E ++ +QTR ADE +T +Y C +C H +E
Sbjct: 58 ---TLPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKCKKCSHTWRE 103
>gi|395330908|gb|EJF63290.1| hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens
LYAD-421 SS1]
Length = 106
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + + N C++C ++ + + +E+ LG
Sbjct: 1 MLFCPNCANLLVISAETGYNKWACNTCAYEFPITKQMTSRTK--LKRKEVDDVLG----- 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ C KC N Y+ Q RSADE TT+Y C CG+ +E+
Sbjct: 54 ---GEDQWKHADSTNATCPKCDNGRAYFYQLQIRSADEPMTTFYRCTACGNNWREN 106
>gi|237830299|ref|XP_002364447.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|211962111|gb|EEA97306.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|221487521|gb|EEE25753.1| RNA polymerase III, putative [Toxoplasma gondii GT1]
gi|221507317|gb|EEE32921.1| RNA polymerase III, putative [Toxoplasma gondii VEG]
Length = 106
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 10 LFCKFCGTMLRMESNHVV---CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
LFC C ML + + C +C + N+++ R++ +T ++ L E
Sbjct: 3 LFCPTCHNMLLVRQEVTMQFHCRTCPYVFNIKEKLTRKMP--LTPKKADEPLD----ESQ 56
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ +G +K +C KC + E Y+ Q RSADE T +Y C C R +E+
Sbjct: 57 EAARG----AKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCNCRFRWREN 106
>gi|167391478|ref|XP_001739791.1| DNA-directed RNA polymerase III subunit RPC10 [Entamoeba dispar
SAW760]
gi|165896395|gb|EDR23814.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
dispar SAW760]
Length = 107
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + CS+C +K +++I Y E+KR+ ++ +
Sbjct: 3 FFCANCGNLLVVERGTELYFKCSTCPYKFTF----NKKIVYE---SELKRKQIDAVLGEE 55
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
Q + K + CEKC Y+ Q RSADE TT+Y C CG++ ++
Sbjct: 56 QWKNAQ----KTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107
>gi|338713074|ref|XP_003362820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Equus caballus]
Length = 77
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 24 GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGHRWRD 77
>gi|70989655|ref|XP_749677.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Aspergillus
fumigatus Af293]
gi|66847308|gb|EAL87639.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus fumigatus Af293]
gi|159129084|gb|EDP54198.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Aspergillus fumigatus A1163]
Length = 121
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYA-----VTAEEIKRELG 59
+FC CG +L + +VC C +N V + IS + + KR
Sbjct: 7 LIFCTDCGNLLPESTGDPTKILVCDVCG-ARNKDTVPNTIISESKPNAFPSTLRAKRSAV 65
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+L + + + TQ C +C EMY++T Q RSADEG T +Y C CG++
Sbjct: 66 QTLTAEDKRTEALTQ-----HTCARCGRKEMYFTTVQLRSADEGSTVFYTC-VCGYK 116
>gi|392566129|gb|EIW59305.1| hypothetical protein TRAVEDRAFT_28538 [Trametes versicolor
FP-101664 SS1]
Length = 106
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAE-EIKRELGISLF 63
LFC C +L + + N C++C + + I+ +T+ ++KR++ +
Sbjct: 1 MLFCPNCANLLVISAETGYNKWACNTCAY--------EFPITKQMTSRTKLKRKVVDDVL 52
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD+ C KC N Y+ Q RSADE TT+Y C C + +E+
Sbjct: 53 ---GGDEQWKHADSTTATCPKCDNGRAYFYQLQIRSADEPMTTFYRCTACANNWREN 106
>gi|67477563|ref|XP_654238.1| RNA polymerase III subunit [Entamoeba histolytica HM-1:IMSS]
gi|56471268|gb|EAL48851.1| RNA polymerase III subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449706368|gb|EMD46228.1| RNA polymerase III subunit, putative [Entamoeba histolytica KU27]
Length = 107
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 16/116 (13%)
Query: 10 LFCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E + C++C +K +++I Y E+KR+ ++ +
Sbjct: 3 FFCANCGNLLVVERGTELYFKCNTCPYKFTF----NKKIVYE---SELKRKQIDAVLGEE 55
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
Q + K + CEKC + Y+ Q RSADE TT+Y C CG++ ++
Sbjct: 56 QWKNAQ----KTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRDG 107
>gi|365982255|ref|XP_003667961.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
gi|343766727|emb|CCD22718.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPSCNNMLLITTADSGVYTLTCRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C EKC Y+ Q RSADE TT+Y C C HR +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKCVNCAHRWKEN 110
>gi|442753419|gb|JAA68869.1| Putative rna polymerase iii [Ixodes ricinus]
Length = 108
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLF 63
LFC C +L +E C++C + N++ +++R+ +++ LG
Sbjct: 2 LLFCPTCANILIVEQGLECFRFACNTCPYVHNIKVKMSNRKYPRLKDVDDV---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + C KC + Y+ QTRSADE TT+Y C CGH+ +E
Sbjct: 55 ----GAAAWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 108
>gi|440913471|gb|ELR62921.1| DNA-directed RNA polymerase III subunit RPC10, partial [Bos
grunniens mutus]
Length = 71
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 18 GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 71
>gi|194881659|ref|XP_001974939.1| GG20841 [Drosophila erecta]
gi|190658126|gb|EDV55339.1| GG20841 [Drosophila erecta]
Length = 108
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E + C++C + ++ R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIR----RKISAKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + C C + Y+ QTRSADE TT+Y C C H C +
Sbjct: 55 -----GKAAWENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKC--CNHECNHT 105
>gi|50311767|ref|XP_455912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|38636481|emb|CAD58583.1| RNA polymerase III C11 subunit [Kluyveromyces lactis]
gi|49645048|emb|CAG98620.1| KLLA0F18568p [Kluyveromyces lactis]
Length = 112
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 27/123 (21%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + C SC ++ + +V DR+ + +E+ LG
Sbjct: 4 FCPLCNNMLLVSKADSGLYKLACGSCPYQFLIDGIEVYDRK---NLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPE------MYYSTRQTRSADEGQTTYYICPRCGHRC 117
GE V + +C N + Y+ Q RSADE TT+Y C CGH+
Sbjct: 57 -------GEGAWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKCVNCGHKW 109
Query: 118 QES 120
+E+
Sbjct: 110 REN 112
>gi|156039435|ref|XP_001586825.1| predicted protein [Sclerotinia sclerotiorum 1980]
gi|154697591|gb|EDN97329.1| predicted protein [Sclerotinia sclerotiorum 1980 UF-70]
Length = 95
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 77 KVKRACEK----CQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+VKR+CE C EM + Q R ADEG T Y CP CG+ QE
Sbjct: 47 RVKRSCENPNIDCPAEEMTFRNVQMRGADEGSTIIYTCPECGYGFQE 93
>gi|124028485|ref|YP_001013805.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
gi|123979179|gb|ABM81460.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
Length = 114
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKR-ELGISLFEQ 65
FC CG+++ + + VC SC + + + ++ ++ AV +EIK E +
Sbjct: 3 FCPRCGSLMTLRRTNDRTVWVCPSCGYTEELSQASEAQL--AVLRKEIKHSEKERIVVVD 60
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P + + K K C +C E Y QTR ADE T ++ C CG+ +E
Sbjct: 61 P--NVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPTRFFKCVSCGYVWRE 112
>gi|292655539|ref|YP_003535436.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|448555421|ref|ZP_21631461.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
gi|291371717|gb|ADE03944.1| DNA-directed RNA polymerase subunit M1 [Haloferax volcanii DS2]
gi|445718166|gb|ELZ69869.1| DNA-directed RNA polymerase subunit M1 [Haloferax sp. ATCC BAA-644]
Length = 106
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+++ + VC + K +++E S T + E+ + + + D
Sbjct: 3 FCDDCGSLMTPQDGVWVCPNGHEKARD---SEKEKSMVTTEGQESSEV-VDMSDVDNADI 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T K C KC + Y +Q RSADE +T ++ C C H+ +E
Sbjct: 59 GPT----TKAICPKCGHDVARYEMKQIRSADESETRFFTCVECDHKWRE 103
>gi|242066406|ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
gi|241934323|gb|EES07468.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
Length = 166
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 6 GRDFLFCKFCGTMLRMESN------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
GR FC CG +L+++ + CS C + +Q+ ++ A +K+E+
Sbjct: 54 GRAMEFCPVCGMLLQIDPGTASHRLRLFCSVCPYVCPIQNKIVKK------ARLVKKEV- 106
Query: 60 ISLFEQPQGDKGETQLSKVKRA--CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+P + S K A C++C + E Y+ Q RSADE TT Y C C C
Sbjct: 107 -----EPIFSTADEMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRC--CKEEC 159
Query: 118 Q 118
Q
Sbjct: 160 Q 160
>gi|405977278|gb|EKC41737.1| DNA-directed RNA polymerase III subunit RPC10 [Crassostrea gigas]
Length = 108
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLF 63
FC C +L +E C++C + +N+Q +A R+ +E+ LG
Sbjct: 2 LTFCPTCANVLVVEEGQNCYRFACNTCPYVQNIQRKIASRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHR 116
G + + C KC + ++ QTRSADE TT+Y C C HR
Sbjct: 55 ----GAAAWENVDSTEETCPKCSHNRAFFMQIQTRSADEPMTTFYKCCNMACAHR 105
>gi|642273|emb|CAA50073.1| transcription associated protein [Sulfolobus acidocaldarius]
Length = 111
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 10/113 (8%)
Query: 11 FCKFCGTML--RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+M+ R E+ V CS C + + ++ + +I+ + + L ++
Sbjct: 3 FCPKCGSMMMPRKENGKTVYKCSKCAYI-DTENQKEAKITTVIKHSAKAKTLVLASDMPN 61
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G QL++ +C C N E Y+ QTRSADE T +Y C +CG +E
Sbjct: 62 PG----VQLTR-GISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>gi|310795576|gb|EFQ31037.1| transcription factor S-II [Glomerella graminicola M1.001]
Length = 122
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E N + C C + +D + I + +L L
Sbjct: 7 LVFCHDCGNLLPASMGTEKNTLTCDCCG--ADNKDTGSKTIVTQTKPSDFPSQLRQKLQS 64
Query: 65 QPQG-DKGETQL-SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q D+ + +K C KC+ E+ ++ Q RSADEG T ++ C CG +
Sbjct: 65 NVQAVDRANVSTEATIKETCPKCEREEVRFTAVQLRSADEGSTIFFTC-DCGFK 117
>gi|424513733|emb|CCO66355.1| predicted protein [Bathycoccus prasinos]
Length = 250
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
V C KC N + + T Q RSADEGQT +Y C +C H
Sbjct: 207 VDEPCPKCDNHVLRFYTMQLRSADEGQTVFYECEKCKH 244
>gi|326474028|gb|EGD98037.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
gi|326478225|gb|EGE02235.1| DNA-directed RNA polymerase I polypeptide [Trichophyton equinum CBS
127.97]
Length = 116
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
L C CGT R ++ + S K + + + +E+ K++ +
Sbjct: 27 ILTCDICGTQNRDRASRTIVSESKPSAFPSSLRSKSSAVRTLSEQRKQDDAV-------- 78
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
++ C C EM Y T Q RSADEG T +Y C CGH+
Sbjct: 79 ---------IQETCPDCGRTEMRYYTLQLRSADEGSTVFYTC-ECGHK 116
>gi|406604219|emb|CCH44305.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 111
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 11 FCKFCGTMLRMES-----NHVVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + + + C +C ++ + ++ DR+ + ++I LG
Sbjct: 4 FCPNCSNMLLISTADTGIHRLNCPTCPYEFPIAGVEIFDRK---ELPTKQIDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
GD + + C + C N + Y+ Q RSADE TT+ C +CGH+ +E+
Sbjct: 57 ----GDGAWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFLKCVKCGHQWREN 111
>gi|315425737|dbj|BAJ47392.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315425785|dbj|BAJ47439.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315427642|dbj|BAJ49239.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|343484624|dbj|BAJ50278.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
Length = 110
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 23/114 (20%)
Query: 6 GRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
G+ L CK CG +E VV K ++ + ++ V AEE +
Sbjct: 18 GKAMLVCKRCGYQKPLEGEKVV-----IKLEKENTVSKNVAAIVEAEEAPLPTTSDVV-- 70
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C + E + T QTRSADE T ++ C +CGH +E
Sbjct: 71 ----------------CPQCGHNEAKWWTVQTRSADEPMTQFFRCVKCGHTWRE 108
>gi|449015859|dbj|BAM79261.1| DNA-directed RNA polymerase I subunit [Cyanidioschyzon merolae
strain 10D]
Length = 140
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 74 QLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q+ + C KC + E+YY T Q RSADEGQT Y C RC R
Sbjct: 93 QVVRGGECCPKCNSQELYYETVQMRSADEGQTILYECCRCRTR 135
>gi|358391613|gb|EHK41017.1| hypothetical protein TRIATDRAFT_31399 [Trichoderma atroviride IMI
206040]
Length = 117
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 11 FCKFCGTMLRMESNHVV----CSSCKFKKNVQDVADREISYAVTAE-EIKRELGISLFEQ 65
FC CG L + N + C S K + ++ + +E KR+ L
Sbjct: 5 FCSPCGNTLDISPNSTIQCDCCGSMNKNKFLAGISTTSSTNNFPSELRRKRQTTQQLPSL 64
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
D T + C KC E+ Y+T Q RSADEG T +Y C C R
Sbjct: 65 ASVDTWPT----TRETCPKCGAKEVRYTTLQLRSADEGTTLFYYCSDCSER 111
>gi|195486786|ref|XP_002091654.1| GE13781 [Drosophila yakuba]
gi|194177755|gb|EDW91366.1| GE13781 [Drosophila yakuba]
Length = 108
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E + C++C + ++ R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIR----RKISAKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + C C + Y+ QTRSADE TT+Y C C H C +
Sbjct: 55 -----GKAAWENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKC--CNHECNHT 105
>gi|171186130|ref|YP_001795049.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
gi|170935342|gb|ACB40603.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
Length = 110
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 73 TQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L K K R C KC + E Y +QTR+ADE T +Y C +CGH +E
Sbjct: 61 VNLPKAKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGHTWRE 108
>gi|242776973|ref|XP_002478939.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722558|gb|EED21976.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces stipitatus ATCC 10500]
Length = 121
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFK-KNVQD---VADREISYAVTAEEIKRELGI 60
+FC CG +L+ + +VC +C K K++ V++ + + +A KR
Sbjct: 7 LIFCTDCGNLLQESTGSPDAILVCEACGAKNKDILPQTIVSESKPNAFPSALRAKRSALQ 66
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+L + + TQ + C +C EM+++T Q RSADEG T +Y C CG++
Sbjct: 67 TLTAADRTMEAVTQYT-----CAECGRKEMFFTTAQLRSADEGTTVFYRC-VCGYK 116
>gi|261197766|ref|XP_002625285.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239595248|gb|EEQ77829.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239607665|gb|EEQ84652.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 261
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+++ C+KC ++ +S Q RSADEG T +Y CP+CG+R
Sbjct: 128 RIQVDCQKCDLMKVTWSEMQLRSADEGSTIFYRCPKCGNR 167
>gi|241012140|ref|XP_002405456.1| RNA polymerase III [Ixodes scapularis]
gi|215491748|gb|EEC01389.1| RNA polymerase III [Ixodes scapularis]
Length = 109
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLF 63
LFC C +L +E C++C + N++ +++R+ +++ LG
Sbjct: 3 LLFCPTCANILIVEQGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDV---LG---- 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + + C KC + Y+ QTRSADE TT+Y C CGH+ +E
Sbjct: 56 ----GAAAWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQWRE 109
>gi|448728181|ref|ZP_21710512.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
gi|445797399|gb|EMA47874.1| transcription factor TFIIS [Halococcus saccharolyticus DSM 5350]
Length = 86
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 47 YAVTAEEIKRELGISLFEQPQ-----GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSAD 101
YA EEI E G + ++ D E L + C +C N Y+ +Q RSAD
Sbjct: 6 YADLFEEITGETGTTQSQEQSEIIDVSDAEERGLPTTEVDCPECDNDRAYWYMQQIRSAD 65
Query: 102 EGQTTYYICPRCGHRCQE 119
E +T +++C C H +E
Sbjct: 66 ESETRFFVCTECEHSWRE 83
>gi|219121449|ref|XP_002185948.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
gi|209582797|gb|ACI65418.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
Length = 111
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 9 FLFCKFCGTMLRM---------ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELG 59
FC GT+L++ E++ CS+C + ++ A R + + + LG
Sbjct: 1 MWFCPLDGTLLQVQIRSGAVPAENSFFYCSTCPYSCSID--APRTVKTPTKRKVVDDILG 58
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + + C C + E Y+ Q RSADE + +Y C +C H+ +
Sbjct: 59 --------GAAAWENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKCVQCSHQWND 110
>gi|148643780|ref|YP_001274293.1| DNA-directed RNA polymerase, subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|148552797|gb|ABQ87925.1| DNA-directed RNA polymerase, subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
Length = 104
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAE-EIKRELGISLFEQPQG 68
FC CG +L + + C C +++++ D V D+ Y V E K E+ ++
Sbjct: 3 FCPECGAILLPMNKKLKCK-CGYERSLSDEVKDQ---YEVKGETNPKAEVIVT------- 51
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
D L C KC + Y+ T QTRSADE T + C +CG+ + S
Sbjct: 52 DNKNVALPTTTITCYKCGGTKGYWWTVQTRSADEAPTNFIRCAKCGNTWRSS 103
>gi|238491206|ref|XP_002376840.1| DNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220697253|gb|EED53594.1| DNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 131
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
++ C KC + ++ YS Q RSA+EG T +Y C +CGHR
Sbjct: 84 IEVDCVKCPSKDVTYSQVQLRSANEGSTIFYNCLKCGHR 122
>gi|389848075|ref|YP_006350314.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
gi|388245381|gb|AFK20327.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
Length = 100
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
G L E +G + E + + C++C + E +Y+ +QT SADE T ++ C CG+R +
Sbjct: 38 GDELIETEEGAEFEGKPTAKDVHCDECGHTEAWYTIKQTASADEPPTRFFKCKECGYRWR 97
Query: 119 E 119
E
Sbjct: 98 E 98
>gi|302920883|ref|XP_003053168.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734108|gb|EEU47455.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 126
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 5 LGRDFLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKREL 58
L C C +L + +N + C +C F+ ++ + V R + V E++
Sbjct: 14 LTNKLAVCPHCANILTVSFTNTRTNRLECRTCPFEHHITEPVFSRRMYERVEKEDV---- 69
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
F P G Q +V+ + C E + Q RSADE T++Y C CGHR +
Sbjct: 70 ----FGGP-GAWDNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKCMTCGHRWR 124
Query: 119 ES 120
E+
Sbjct: 125 EN 126
>gi|390937792|ref|YP_006401530.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
gi|390190899|gb|AFL65955.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
Length = 114
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 10/114 (8%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
C CG ++R ++VC+ C +K V+ A + V+ I + G
Sbjct: 4 LCPKCGGLMRPRKIDGKLYLVCTRCGYK--VEADASEASGFKVSTR-IDHKPGEKTLVLE 60
Query: 67 QGDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G GE L + C KC E YY QTR+ADE T ++ C +CG+ +E
Sbjct: 61 SG--GEANLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWRE 112
>gi|397651491|ref|YP_006492072.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
gi|393189082|gb|AFN03780.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
Length = 109
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKR--ELGISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 3 FCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTK--AYRRT-EEVKHRPDEGVVVIEQE 59
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC + E ++ QTR+ DE T +Y C +CG+
Sbjct: 60 V-----STLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGY 103
>gi|332158918|ref|YP_004424197.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
gi|331034381|gb|AEC52193.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
Length = 110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKR--ELGISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 4 FCPKCGSIMVPDKKRGVFVCRRCGYEEPIN--PEDAKAYKRT-EEVKHRPDEGVIVVEQ- 59
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC E +Y QTR+ DE T ++ C RCG+
Sbjct: 60 ----DFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFFKCKRCGY 104
>gi|284174479|ref|ZP_06388448.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
solfataricus 98/2]
Length = 111
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 11 FCKFCGTMLRMES----NHVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGISLF 63
FC C +M+ + N C+ C ++K V + V ++ +++ + + +
Sbjct: 3 FCPKCNSMMVPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTL-------VL 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E+ + G ++ V C C+N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 56 EEEEMPSGAQKIKGV--LCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109
>gi|15897234|ref|NP_341839.1| DNA-directed RNA polymerase subunit M [Sulfolobus solfataricus P2]
gi|384433745|ref|YP_005643103.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
gi|13813433|gb|AAK40629.1| DNA-directed RNA polymerase, subunit M (rpoM-1) [Sulfolobus
solfataricus P2]
gi|261601899|gb|ACX91502.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
Length = 114
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 11 FCKFCGTMLRMES----NHVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGISLF 63
FC C +M+ + N C+ C ++K V + V ++ +++ + + +
Sbjct: 6 FCPKCNSMMVPKKSNGKNVYRCTKCGYEKEVPETTIVVTSKVKHSIKEKTL-------VL 58
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E+ + G ++ V C C+N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 59 EEEEMPSGAQKIKGV--LCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 112
>gi|18977358|ref|NP_578715.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM
3638]
gi|18893037|gb|AAL81110.1| DNA-directed RNA polymerase subunit m [Pyrococcus furiosus DSM
3638]
Length = 110
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKR--ELGISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 4 FCPKCGSIMIPDRRRGVFVCRKCGYEEPINPEDTK--AYRRT-EEVKHRPDEGVVVIEQE 60
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C KC + E ++ QTR+ DE T +Y C +CG+
Sbjct: 61 V-----STLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKCKKCGY 104
>gi|45201124|ref|NP_986694.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|44985907|gb|AAS54518.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|374109945|gb|AEY98850.1| FAGR029Wp [Ashbya gossypii FDAG1]
Length = 112
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 21/120 (17%)
Query: 11 FCKFCGTMLRMESN-----HVVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC +C ML + + C SC ++ ++ ++ DR + +E+ LG
Sbjct: 4 FCPYCNNMLPVSKGDSGVYRLGCPSCPYEFPIEGVEIYDRR---NLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ + + C E C + Y+ Q RSADE TT+Y C CGH+ +E+
Sbjct: 57 ----GEGAWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKCVTCGHKWREN 112
>gi|145551853|ref|XP_001461603.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429438|emb|CAK94230.1| unnamed protein product [Paramecium tetraurelia]
Length = 106
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 17/110 (15%)
Query: 11 FCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC C ML + + + C+ C +K ++ D + I + E P+
Sbjct: 9 FCPQCHFMLELPEVMDIMECNRCGYKCSITDYQPKYIISTIKME-------------PKS 55
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
Q SK+ + Q E Y+ST Q RSADEG T +Y C +C R Q
Sbjct: 56 WLSNQQDSKLSDQSHRAQ--EAYFSTAQLRSADEGSTVFYECVKCQFRYQ 103
>gi|91076202|ref|XP_972311.1| PREDICTED: similar to POLR3K [Tribolium castaneum]
gi|270015174|gb|EFA11622.1| hypothetical protein TcasGA2_TC030689 [Tribolium castaneum]
Length = 108
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 16/116 (13%)
Query: 10 LFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+FC FCG +L + C C ++ + V + + LG
Sbjct: 3 VFCPFCGNLLFAQQTCGRLGFACRICPVSFPIRGKISNRTYFQV--KSVDDVLG------ 54
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G+ C +C +P Y+ QTRSADE T +Y C P C H +E
Sbjct: 55 --GEDAWKNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCNPECAHNWRE 108
>gi|3347836|gb|AAC64680.1| transcription elongation factor S-II [Xenopus laevis]
Length = 121
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ +T E I+ E G TQ ++ CEKC+ Y+ QTRSADE
Sbjct: 54 RELRNTMTQEAIR--------EHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADE 103
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 104 PMTTFVLCNECGNR 117
>gi|300176670|emb|CBK24335.2| unnamed protein product [Blastocystis hominis]
Length = 107
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 14/107 (13%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG +L +E+ CS+C + +V + + + +E++ LG
Sbjct: 3 FCPTCGCLLLVETGTGYLRFFCSTCPYVADVTGIVSSRLD--LKRKEVEDVLG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
G K C C++ Y+ Q RSADE TT+Y C C
Sbjct: 54 -GAAQWENAPKTAARCPYCEHEVAYFQQIQIRSADEPMTTFYRCANC 99
>gi|344302440|gb|EGW32714.1| hypothetical protein SPAPADRAFT_60072 [Spathaspora passalidarum
NRRL Y-27907]
Length = 101
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 24 NHVVCSSC--KFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA 81
N CS+C +FK N + +R+ ++ +E+ LG +G + + +
Sbjct: 12 NKFYCSTCPYEFKINGLQMYERK---KLSRKEVDDVLG------GEGTWDDVDQTAAQCP 62
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ C + Y+ Q RSADE TT+Y C +CGHR +E+
Sbjct: 63 IDSCGGMKAYFFQLQIRSADEPMTTFYKCVKCGHRWKEN 101
>gi|399577248|ref|ZP_10771001.1| transcription termination factor Tfs [Halogranum salarium B-1]
gi|399237631|gb|EJN58562.1| transcription termination factor Tfs [Halogranum salarium B-1]
Length = 100
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77
M+ + +VC++ + +DR+ A + + G L E +G E + +
Sbjct: 1 MMVSQDGAMVCTN----DDCDGTSDRDDDLAAQFVSTEEQSGDELIETEEGADFEGKPTA 56
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C+ C + + +Y+ +QT +ADE T ++ C CG R
Sbjct: 57 SDVVCDDCGHGKAWYTIKQTGAADEPPTRFFKCQECGKR 95
>gi|430813798|emb|CCJ28877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 109
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 10 LFCKFCGTMLRMES-----NHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISLF 63
+FC CG L + + N C +C ++ + + + I + +E+ LG
Sbjct: 2 MFCPACGNHLLIGTSFTGFNRFECRTCPYEFPINRYLCSKRI---MKQKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACE--KCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ + K + C C N Y+ Q RSADE TT+Y C +CGHR +E
Sbjct: 55 ----GEGAWDNVDKTEAQCPVMDCGNLRAYFFQIQIRSADEPMTTFYKCTKCGHRWREG 109
>gi|78707272|ref|NP_001027443.1| CG33785 [Drosophila melanogaster]
gi|195585169|ref|XP_002082362.1| GD25260 [Drosophila simulans]
gi|71911686|gb|AAM68394.2| CG33785 [Drosophila melanogaster]
gi|194194371|gb|EDX07947.1| GD25260 [Drosophila simulans]
Length = 108
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E + C++C + ++ R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIR----RKISTKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + C C + Y+ QTRSADE TT+Y C C H C +
Sbjct: 55 -----GKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKC--CNHECNHT 105
>gi|343425557|emb|CBQ69092.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Sporisorium reilianum SRZ2]
Length = 109
Score = 42.4 bits (98), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C L ++ +N C +C ++ + + T + +KR+ +
Sbjct: 1 MLFCPTCANCLTIQLDDHGNNKWSCHTCPYEFPI-------VRQMTTRQHLKRKEVDDVM 53
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICP--RCGHRCQES 120
G++ + C KC+NP+ ++ Q RSADE TT+Y C +C ++ +E+
Sbjct: 54 ---GGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEPMTTFYRCTNGQCAYQWKEN 109
>gi|119871953|ref|YP_929960.1| transcription termination factor Tfs [Pyrobaculum islandicum DSM
4184]
gi|119673361|gb|ABL87617.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum islandicum DSM
4184]
Length = 110
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 74 QLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L KVK R C KC + E Y +QTR+ADE T +Y C +CG+ +E
Sbjct: 62 NLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>gi|336477592|ref|YP_004616733.1| transcription termination factor Tfs [Methanosalsum zhilinae DSM
4017]
gi|335930973|gb|AEH61514.1| transcription termination factor Tfs [Methanosalsum zhilinae DSM
4017]
Length = 104
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ + + C C +KK Q D + TA + +RE+ + +GD
Sbjct: 3 FCPKCKSIMYPKDGVMQCKKCGYKK--QSTTDEKDLITKTARD-EREVTVL-----EGDT 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ L C +C N Y+ RQ RSADE +T ++ C +C + +E
Sbjct: 55 -DVGLPTTSVRCPECGNNTAYWWLRQLRSADESETRFFKCTKCHYTWRE 102
>gi|435850668|ref|YP_007312254.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
gi|433661298|gb|AGB48724.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
Length = 104
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +M+ VC C K + V+D +S + + + +++ E D+
Sbjct: 3 FCPKCKSMMFPVQGSFVCKKCGHVKGAEGVSDDLVSKSERKDRV-----VTVLEG-NFDQ 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L C +C + Y+ RQ RSADE +T ++ C +C +E
Sbjct: 57 G---LPTTSTRCPECGHNVAYWWLRQLRSADESETRFFKCTKCSATWRE 102
>gi|403217034|emb|CCK71529.1| hypothetical protein KNAG_0H01160 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + + C SC ++ + ++ DR+ + +E+ LG
Sbjct: 4 FCPICNNMLLISHADSGIYTLTCHSCPYEFPIDGIEIYDRK---KLERKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C +KC Y+ Q RSADE TT+Y C CG+R +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKEN 110
>gi|367013272|ref|XP_003681136.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
gi|359748796|emb|CCE91925.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
Length = 110
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + S + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPLCNNMLLIASADSGVYSLSCRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CG+R +E+
Sbjct: 57 ------GGWDNVDQTKVQCPNYDICAGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKEN 110
>gi|358377582|gb|EHK15265.1| hypothetical protein TRIVIDRAFT_217184 [Trichoderma virens Gv29-8]
Length = 130
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTMLRMESN------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC C ML + + C +C++ ++ Q + V G++
Sbjct: 23 FRFCSECSNMLYPKEDEDAHKLQFTCRTCQYTEDAQSTC---VFRNVLNNSSGETAGVT- 78
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
Q + L + +AC +C + E + Q RSAD G +Y+C CGH
Sbjct: 79 ----QDVGSDPTLPRSNKACPRCSHQEAVFFQSQERSADTGMKLFYVCCECGH 127
>gi|147919536|ref|YP_686724.1| transcription factor S [Methanocella arvoryzae MRE50]
gi|110622120|emb|CAJ37398.1| archaeal transcription factor S [Methanocella arvoryzae MRE50]
Length = 106
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 11 FCKFCGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
FC C +++R +V C C +K Q + + V +E RE I++ ++ Q D
Sbjct: 3 FCPKCKSIMRPGGGGMVKCRKCGHEKKAQ-AGNMIVGGPVKDQE--RE--ITVLDEKQ-D 56
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G +VK C C N + Y+ RQ RSADE + ++ C CG +E
Sbjct: 57 AGLPTTEEVK--CPDCGNQKAYWWMRQLRSADESEVRFFRCTECGKTWRE 104
>gi|123478003|ref|XP_001322166.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121905007|gb|EAY09943.1| hypothetical protein TVAG_482170 [Trichomonas vaginalis G3]
Length = 109
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYA-VTAEEIKRELGISLFEQ 65
FC CG +L ++++ + C +C F V R + A + ++K +
Sbjct: 6 FCPACGNLLLVDTSGDRTQLKCRACNF---VMGFVGRTVQSAPLNPLDVKALI------- 55
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
D + +K + C+KC + E +++ Q RSADE T ++ C +CG+ +E
Sbjct: 56 -TNDDAMSFQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCCKCGNTWRE 108
>gi|19173009|ref|NP_597560.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19168676|emb|CAD26195.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329727|gb|AGE95997.1| DNA-directed RNA polymerase III 12.5kDa subunit [Encephalitozoon
cuniculi]
Length = 104
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 21/112 (18%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +ML ++ N + C C + YA++ EEI R +G++ +
Sbjct: 1 MLFCPLCSSMLVVKKQAIGNELSCKMCGY------------LYAIS-EEISRTVGMTP-K 46
Query: 65 QPQGDKGETQLSKVKRACEK---CQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ +G E + K C K C + E+ + QTRSADE T +Y C RC
Sbjct: 47 KSEGFVDEDESLKFVTKCGKRCECGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|374628584|ref|ZP_09700969.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
gi|373906697|gb|EHQ34801.1| DNA-directed RNA polymerase, subunit M [Methanoplanus limicola DSM
2279]
Length = 104
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
+FC C ++++ + C+ C F+K D+A++ T+ ++E+ I E
Sbjct: 1 MMFCPECKSLMKASGGKLKCTRCGFEK---DIANKS-QLMKTSTRTEKEITIVDSEDEIA 56
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T + C +C N ++ RQ RSADE + ++ C +C +E
Sbjct: 57 TLPTTAIR-----CPECGNNTAFWWLRQLRSADESEVRFFKCTKCKFTWRE 102
>gi|452003274|gb|EMD95731.1| hypothetical protein COCHEDRAFT_1166133 [Cochliobolus
heterostrophus C5]
Length = 152
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 76 SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
S + CEKC ++ Y T+Q RSADEG T +Y C CGH+
Sbjct: 79 SIINHPCEKCGREQVRYYTQQLRSADEGTTVFYECD-CGHK 118
>gi|410812209|gb|ACQ41870.2| MIP03842p1 [Drosophila melanogaster]
Length = 117
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E + C++C + ++ R+IS +E+ LG
Sbjct: 11 LFFCPSCGNILIIEEDTNCHRFTCNTCPYISKIR----RKISTKTFPRLKEVDHVLG--- 63
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + C C + Y+ QTRSADE TT+Y C C H C +
Sbjct: 64 -----GKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKC--CNHECNHT 114
>gi|298675051|ref|YP_003726801.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
gi|298288039|gb|ADI74005.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
Length = 103
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ N + C C K + ++ E+ RE+ + E QG
Sbjct: 3 FCPKCKSLMFPVDNSMKCRKCGHIKG----SGSSDTFVSRTEKENREVTVLEGEVDQG-- 56
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
L + C++C + Y+ RQ RSADE +T ++ C +CG
Sbjct: 57 ----LPTTEAKCQECGHTVAYWWLRQLRSADESETRFFKCTKCG 96
>gi|68066450|ref|XP_675208.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56494258|emb|CAH95322.1| conserved hypothetical protein [Plasmodium berghei]
Length = 274
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 59 GISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
I LF++ G+ G ++ K C C + +Y+ QTRSADEG T Y CP C
Sbjct: 216 NIELFKE--GESGAYNITYEK--CTDCDHDFLYFVNIQTRSADEGSTIIYFCPNC 266
>gi|189205621|ref|XP_001939145.1| hypothetical protein PTRG_08813 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975238|gb|EDU41864.1| hypothetical protein PTRG_08813 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 139
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L +S + C C + +D + + + L E
Sbjct: 25 LVFCTDCGNLLDGSVGKQSVILTCGVCGAQN--KDTSSKTVVTVSKPTAFPSSLRAKRSE 82
Query: 65 -QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q ++ S + CEKC ++ Y T+Q RSADEG T +Y C CGH+
Sbjct: 83 VQTISEEDVQTTSVINHPCEKCGREQVRYYTQQLRSADEGTTVFYEC-ECGHK 134
>gi|345004646|ref|YP_004807499.1| transcription termination factor Tfs [halophilic archaeon DL31]
gi|344320272|gb|AEN05126.1| transcription termination factor Tfs [halophilic archaeon DL31]
Length = 105
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 11/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+M++ E + VC+ C + + D + S T + ++ + + D
Sbjct: 3 FCDECGSMMKAEGDEWVCT-CGYTETRGD----DESGMTTQQNQEKSDVVDM-----SDV 52
Query: 71 GETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GE + C +C + + +Q RSADE +T ++ C CG++ +E
Sbjct: 53 GEEAMGPTTETRCPECGHDRASFQMQQIRSADESETRFFTCTECGYKWRE 102
>gi|440790887|gb|ELR12150.1| RNA polymerase III, putative [Acanthamoeba castellanii str. Neff]
Length = 107
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 20/114 (17%)
Query: 10 LFCKFCGTMLRMESN-----HVVCSSCKFKKNVQDVADREIS--YAVTAEEIKRELGISL 62
LFC +C +L +E+ C++C + + D++IS A+ +++ LG +
Sbjct: 3 LFCPYCANVLLVEAGPENRLRFFCNTCPYVFGI----DQKISKKAALERKQVDDILGDEV 58
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
FE Q + + C +C + + QTRSADE +T+Y C +C +
Sbjct: 59 FENAQ---------QTEAKCPECGHDRANFFQLQTRSADEPSSTFYRCMKCASK 103
>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E S+ C++C + + R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTDSHRFTCNTCPYISKIT----RKISTKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + C C + Y+ QTRSADE TT+Y C C H +
Sbjct: 55 -----GKAAWENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQ 104
>gi|429965129|gb|ELA47126.1| hypothetical protein VCUG_01399 [Vavraia culicis 'floridensis']
Length = 105
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 15/115 (13%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+ FC FC T+L + + C +C + ++V + +R V +EIK +
Sbjct: 2 YQFCPFCRTLLLINRMNGTTSFCCRTCSYSESVGRIHER----IVFDKEIKERI------ 51
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ ++K ++ CEKC + QTRSADE T +Y C +C + +E
Sbjct: 52 -VWKEDVMRSMAKCEKICEKCGYNTATFYEMQTRSADEPMTIFYQCLQCKNTWKE 105
>gi|333910679|ref|YP_004484412.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
gi|333751268|gb|AEF96347.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
Length = 105
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C+ C ++ ++ + +Y + ++ +++ EQ
Sbjct: 4 FCPKCKNIMLPKGGMLKCTVCGYE---MELKEENTTYEFKEKIEHKQPEVTVIEQVD--- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C KC + E + +QTR ADE +T +Y C +CGH +E
Sbjct: 58 ---TLPTTRVECPKCGHMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>gi|36938592|gb|AAQ86835.1| RNA polymerase III [Ixodes scapularis]
Length = 108
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 18/115 (15%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQ-DVADREISYAVTAEEIKRELGISLF 63
LFC C +L +E C++C + N++ +++R+ +++ LG
Sbjct: 2 LLFCPTCANILIVEQGLECFRFACNTCPYVHNIKAKMSNRKYPRLKDVDDV---LG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
G + + C KC + Y+ QTRSADE TT+Y C CGH+
Sbjct: 55 ----GAAAWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQ 105
>gi|330913934|ref|XP_003296424.1| hypothetical protein PTT_06530 [Pyrenophora teres f. teres 0-1]
gi|311331410|gb|EFQ95475.1| hypothetical protein PTT_06530 [Pyrenophora teres f. teres 0-1]
Length = 121
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L +S + C C + +D + + + L E
Sbjct: 7 LVFCTDCGNLLDGSVGKQSVVLTCGVCGAQN--KDTSSKTVVTVSKPTAFPSSLRAKRSE 64
Query: 65 -QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q ++ S + CEKC ++ Y T+Q RSADEG T +Y C CGH+
Sbjct: 65 VQTISEEDVQTTSVIDHPCEKCGREQVRYYTQQLRSADEGTTVFYEC-ECGHK 116
>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
Length = 335
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 20/117 (17%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E S+ C++C + + R+IS +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTDSHRFTCNTCPYISKIT----RKISTKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G + C C + Y+ QTRSADE TT+Y C C H +
Sbjct: 55 -----GKAAWENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKC--CNHHTMQ 104
>gi|432331652|ref|YP_007249795.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
gi|432138361|gb|AGB03288.1| transcription factor S, archaeal [Methanoregula formicicum SMSP]
Length = 104
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C +++ + C C + + ++ + E +++E+ I +G+
Sbjct: 1 MFCPECKSLMISSGGQLKCRKCGYIRKIESTDN----MTKKRERVEKEIMIV---DDEGE 53
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
K +T L + C KC N ++ RQ R+ADE + ++ C C H
Sbjct: 54 KIKT-LPTTQIKCPKCGNNLAFWWLRQLRAADESEVRFFKCTECDH 98
>gi|329766135|ref|ZP_08257694.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393794803|ref|ZP_10378167.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia BG20]
gi|329137406|gb|EGG41683.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 103
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C L+ + + C C + V+ ++ V +E S F ++
Sbjct: 3 FCPSCEVKLKKGDSGLQCPKCDY---VEGKETKQTKTVVEEQE-------SQFNVLTENE 52
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L +K CEKC N E + QTRSADE T +Y C +C +
Sbjct: 53 ATETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCSKCRY 97
>gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
gi|297337925|gb|EFH68342.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
Length = 106
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKR-ELGISLFEQP 66
FC CG +LR E ++ CS+C + ++Y EIK+ +L + +P
Sbjct: 3 FCPTCGNLLRYEGSGNSRFFCSTCPY-----------VAYVERQVEIKKKQLLVKKSIEP 51
Query: 67 QGDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K + + A C +C + + Y+ + Q RSADE ++ +Y C +C +E
Sbjct: 52 VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCDFTWRE 105
>gi|302800796|ref|XP_002982155.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
gi|300150171|gb|EFJ16823.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
Length = 107
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 11 FCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREIS--YAVTAEEIKRELGISLFEQ 65
FC C ++L +E C +C + N+ D EI+ + +E+ LG
Sbjct: 3 FCPTCSSLLLVEHAARLRYFCPTCAYIYNI----DHEITKRIPLKNKEMDDILG------ 52
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G+ + C KC + Y+ Q RSADE T +Y C P C +R +E
Sbjct: 53 --GEDAWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNPDCSYRWRE 106
>gi|219852680|ref|YP_002467112.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
gi|219546939|gb|ACL17389.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
Length = 103
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 9/110 (8%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC C +++ + + C C + +++ I EE + E I F++ Q
Sbjct: 1 MFCPQCKSLMISSAGQLKCKRCGYIRDITGADQMRI------EEKRSEKEIIFFDEDQEV 54
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + C +C++ ++ RQ RSADE + ++ C +CG+ +E
Sbjct: 55 ATKPTFAI---KCPECEHNLAFWWMRQLRSADESEVRFFKCVKCGYTWRE 101
>gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 106
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 16/108 (14%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKR-ELGISLFEQP 66
FC CG +LR E S+ CS+C + ++Y EIK+ +L + +P
Sbjct: 3 FCPTCGNLLRYEGGGSSRFFCSTCPY-----------VAYIERRVEIKKKQLLVKKSIEP 51
Query: 67 QGDKGETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
K + + A C +C + + Y+ + Q RSADE ++ +Y C +C
Sbjct: 52 VVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKC 99
>gi|340515477|gb|EGR45731.1| predicted protein [Trichoderma reesei QM6a]
Length = 129
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTML------RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC C ML + C +C++ ++ Q + V G++
Sbjct: 22 FRFCSECSNMLYPKEDEELRKLQFTCRTCQYTEDAQSTC---VFRNVLNSSSGETAGVT- 77
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
Q + L + + C KC + E + Q RSAD G +Y+C CGH
Sbjct: 78 ----QDVASDPTLPRSNKTCPKCAHQEAVFFQSQERSADTGMKLFYVCCECGH 126
>gi|269865738|ref|XP_002652029.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
gi|220063290|gb|EED42028.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
Length = 95
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 18 MLRMESNHVVCSSCKFKKNVQDV-ADREISYAVTAEEIKRELGISLFEQPQGDKGETQLS 76
+ +M +VC +CK++ + + E+ +EI FE+P G+ G +
Sbjct: 4 LCKMSDQIIVCPNCKYENKYSETKLESEVLSPTKTDEI--------FEKPSGELGNFEAI 55
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
C +C + + QTRSADE T +Y C C H
Sbjct: 56 D----CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEH 90
>gi|389852512|ref|YP_006354746.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
gi|388249818|gb|AFK22671.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
Length = 110
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISLFEQP 66
FC CG+++ + VC C +++ + + +Y T EE+K + G+ + EQ
Sbjct: 4 FCPKCGSIMIPDKKRGVFVCRKCGYEEPIN--PEDAKAYRRT-EEVKHKPDEGVIVVEQ- 59
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ L K C +C + E ++ QTR+ DE T +Y C +CG+
Sbjct: 60 ----DFSTLPTAKVTCPRCGHNEAWWWELQTRAGDEPSTIFYKCKKCGY 104
>gi|227828074|ref|YP_002829854.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|227830811|ref|YP_002832591.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|229579707|ref|YP_002838106.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|229585343|ref|YP_002843845.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238620304|ref|YP_002915130.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|385773782|ref|YP_005646349.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
gi|385776417|ref|YP_005648985.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|227457259|gb|ACP35946.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|227459870|gb|ACP38556.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|228010422|gb|ACP46184.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|228020393|gb|ACP55800.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238381374|gb|ACR42462.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|323475165|gb|ADX85771.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|323477897|gb|ADX83135.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
Length = 111
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 11 FCKFCGTMLRMES----NHVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGISLF 63
FC C +M+ + N C+ C +++ V + V ++ +++ + + +
Sbjct: 3 FCPKCNSMMVPKKSNGKNTYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTL-------IL 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E+ + G ++ V C C+N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 56 EEEEMPSGAQKIKGV--LCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109
>gi|451927375|gb|AGF85253.1| transcription factor [Moumouvirus goulette]
Length = 170
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ C C+N E +Y QTRSADE TT+Y C +C
Sbjct: 129 KPCRACKNTEYFYRQLQTRSADEPMTTFYTCKKCN 163
>gi|395835535|ref|XP_003790733.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 113
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 27 VCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKC 85
C++C + N+ + V +R+ S +++ LG G + +C KC
Sbjct: 29 ACNTCPYVHNITRKVTNRKYSKLKKVDDV---LG--------GASAWENVDSTAESCPKC 77
Query: 86 QNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
++P Y+ QT SADE TT+Y C +CGH ++
Sbjct: 78 EHPRAYFMQLQTSSADEPMTTFYKCCNAQCGHHWRD 113
>gi|73668417|ref|YP_304432.1| DNA-directed RNA polymerase subunit M [Methanosarcina barkeri str.
Fusaro]
gi|72395579|gb|AAZ69852.1| DNA-directed RNA polymerase, subunit M [Methanosarcina barkeri str.
Fusaro]
Length = 104
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +M+ ++ + C C N+ + E S+ + E+ + EQ G
Sbjct: 3 FCPKCKSMMFPKNGNFECRKCG---NIIPIKSDEKSFVSKDKIDDHEIVVLEGEQISG-- 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L C +C N + RQ RSADE +T ++ C +CG +E
Sbjct: 58 ----LPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGFTWRE 102
>gi|66362552|ref|XP_628242.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
gi|46229854|gb|EAK90672.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
Length = 62
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 75 LSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
L K+ C KC E Y+ Q RSADE T++Y C +C + +E+
Sbjct: 17 LFKLLAVCPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKEN 62
>gi|441432414|ref|YP_007354456.1| TFII-like transcription factor [Acanthamoeba polyphaga moumouvirus]
gi|371944878|gb|AEX62699.1| transcription factor S-II-related protein [Moumouvirus Monve]
gi|440383494|gb|AGC02020.1| TFII-like transcription factor [Acanthamoeba polyphaga moumouvirus]
Length = 170
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ C C+N E +Y QTRSADE TT+Y C +C
Sbjct: 129 KPCRACKNTEYFYRQLQTRSADEPMTTFYTCKKCN 163
>gi|380489139|emb|CCF36903.1| transcription factor S-II [Colletotrichum higginsianum]
Length = 110
Score = 41.6 bits (96), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 9 FLFCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C +L + + N + C +C F+ + + + + +R+ +F
Sbjct: 2 LLFCPNCANILTVSAYAGVRNRLECRTCPFEHAITEPI-------YSRRDFERKEREDVF 54
Query: 64 EQP----QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P DK Q K E C E + Q RSADE TT+Y C CG+R +E
Sbjct: 55 GGPGEWDNADKARAQCPK-----EGCNGEEAAFFQVQIRSADEPMTTFYKCMTCGNRWRE 109
Query: 120 S 120
+
Sbjct: 110 N 110
>gi|311977721|ref|YP_003986841.1| transcription factor S-II-related protein [Acanthamoeba polyphaga
mimivirus]
gi|82000272|sp|Q5UQS8.1|TFS2_MIMIV RecName: Full=Transcription factor S-II-related protein
gi|55416958|gb|AAV50608.1| TFII-like transcription factor [Acanthamoeba polyphaga mimivirus]
gi|308204765|gb|ADO18566.1| transcription factor S-II-related protein [Acanthamoeba polyphaga
mimivirus]
gi|351737490|gb|AEQ60525.1| TFII-like transcription factor [Acanthamoeba castellanii mamavirus]
Length = 173
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 49 VTAEEIKRELGISLFEQPQ-GDKGETQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTT 106
+ EE+ ++ I + + Q ++ Q++ V+ + C C+N ++ QTRSADE TT
Sbjct: 99 LNPEELNKDNWIKIIARKQMTEETLNQMATVEWKPCYACKNTSYHFYQLQTRSADEPMTT 158
Query: 107 YYICPRC 113
+YIC C
Sbjct: 159 FYICKNC 165
>gi|354485610|ref|XP_003504976.1| PREDICTED: transcription elongation factor A protein 3-like
[Cricetulus griseus]
Length = 362
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 290 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 339
Query: 103 GQTTYYICPRCGHRCQE 119
TT+ +C CG+R +E
Sbjct: 340 PMTTFVLCNECGNRWKE 356
>gi|291233503|ref|XP_002736692.1| PREDICTED: transcription elongation factor A 1-like [Saccoglossus
kowalevskii]
Length = 138
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 25 HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ-GDKGETQLSKVKRACE 83
V+C S +K A+ S + +E++REL + Q G T+ S +K C
Sbjct: 46 QVLCGSIPPEKIANMTAEEMASDRL--KELRRELTKEAIREAQMSTTGGTKTSLLK--CG 101
Query: 84 KCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
KC+ Y+ QTRSADE TT+ C CG+R
Sbjct: 102 KCKKRNCTYNQVQTRSADEPMTTFVFCNECGNR 134
>gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
gi|9665148|gb|AAF97332.1|AC023628_13 Similar to DNA-directed RNA polymerase subunit M [Arabidopsis
thaliana]
gi|30793865|gb|AAP40385.1| unknown protein [Arabidopsis thaliana]
gi|30794074|gb|AAP40481.1| unknown protein [Arabidopsis thaliana]
gi|110738907|dbj|BAF01375.1| hypothetical protein [Arabidopsis thaliana]
gi|332189133|gb|AEE27254.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
Length = 106
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 11 FCKFCGTMLRME---SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC CG +LR E ++ CS+C + +Q R++ +K+ + + +
Sbjct: 3 FCPTCGNLLRYEGGGNSRFFCSTCPYVAYIQ----RQVEIKKKQLLVKKSIEAVVTKDDI 58
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
ET+ C +C + + Y+ + Q RSADE ++ +Y C +C
Sbjct: 59 PTAAETEA-----PCPRCGHDKAYFKSMQIRSADEPESRFYRCLKC 99
>gi|348570796|ref|XP_003471183.1| PREDICTED: zinc finger protein 436-like [Cavia porcellus]
Length = 856
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 286 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLQ--CSKCKKKNCTYNQMQTRSADE 335
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CGHR
Sbjct: 336 PMTTFVLCNECGHR 349
>gi|212532943|ref|XP_002146628.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces marneffei ATCC 18224]
gi|210071992|gb|EEA26081.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Talaromyces marneffei ATCC 18224]
Length = 121
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGI---S 61
+FC CG +LR + + C +C K +D+ + I L +
Sbjct: 7 LIFCTDCGNLLRESTGSPDAILECGACGAKN--KDIPPQTIISESKPNAFPSTLRAKRSA 64
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
L D+ T + + C +C EM+++T Q RSADEG T +Y C CG++
Sbjct: 65 LQTLTAADR--TMEAVTQHTCAECGRKEMFFTTAQLRSADEGTTVFYRC-VCGYK 116
>gi|229581627|ref|YP_002840026.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
gi|228012343|gb|ACP48104.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
Length = 111
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 11 FCKFCGTMLRMES----NHVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGISLF 63
FC C +M+ + N C+ C +++ V + V ++ +++ + + +
Sbjct: 3 FCPKCNSMMVPKKSNGKNIYRCTKCGYEEEVPETTIVVTSKVKHSIKEKTL-------IL 55
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
E+ + G ++ V C C+N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 56 EEEEMPSGAQKIKGV--LCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109
>gi|224009087|ref|XP_002293502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970902|gb|EED89238.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 10 LFCKFCGTMLRM-----------ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL 58
FC GT+L++ +N C++C + S +T +I++
Sbjct: 2 WFCPLDGTLLQVITATSSASTSPSTNIFACTTCPY------------SQPITTPQIQKSF 49
Query: 59 GI--SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
I + + G+K + + C C E Y+ Q RSADE + +Y C +C H+
Sbjct: 50 PIRKKVDDILGGEKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKCVKCSHQ 109
Query: 117 CQE 119
+
Sbjct: 110 WND 112
>gi|238598946|ref|XP_002394740.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
gi|215464278|gb|EEB95670.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
Length = 70
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+C KC N + Y+ Q RSADE TT+Y C C H+ +E+
Sbjct: 31 SCPKCNNGQAYFYQLQIRSADEPMTTFYRCTACAHQWREN 70
>gi|389846917|ref|YP_006349156.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
gi|388244223|gb|AFK19169.1| DNA-directed RNA polymerase subunit M1 [Haloferax mediterranei ATCC
33500]
Length = 106
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYA-VTAEEIKRELGISLFEQPQGD 69
FC CG+++ E VC + K D E A VT E + + + + +
Sbjct: 3 FCDECGSLMTPEDGVWVCPNGHEKAR-----DSEKEKAMVTTEGQESSEVVDMSDVDNAE 57
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T + C KC++ Y +Q RSADE +T ++ C C H+ +E
Sbjct: 58 IGPTTTA----ICPKCEHDVARYEMKQIRSADESETRFFTCVECDHKWRE 103
>gi|344254454|gb|EGW10558.1| Transcription elongation factor A protein 2 [Cricetulus griseus]
Length = 255
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 188 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCSKCKKKNCTYTQVQTRSSDE 237
Query: 103 GQTTYYICPRCGHR 116
TTY +C CG+R
Sbjct: 238 PMTTYVVCNECGNR 251
>gi|310800075|gb|EFQ34968.1| transcription factor S-II [Glomerella graminicola M1.001]
Length = 110
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 9 FLFCKFCGTMLRMES-----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLF 63
LFC C +L + + N + C +C F+ + + S + + ++
Sbjct: 2 LLFCPNCANILTVSAYAGVRNRLECRTCPFEHAITEPI---YSRREFERKEREDVFGGPG 58
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
E DK Q K E C E + Q RSADE TT+Y C CG+R +E+
Sbjct: 59 EWDNADKARAQCPK-----EGCNGEEAAFFQVQIRSADEPMTTFYKCMTCGNRWREN 110
>gi|148223439|ref|NP_001081812.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|1373400|gb|AAC60115.1| transcription elongation factor type xTFIIS.l [Xenopus laevis]
gi|46249530|gb|AAH68738.1| LOC398066 protein [Xenopus laevis]
Length = 292
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 52 EEIKRELG-ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+E+++E+ S+ E G G TQ C KC+ Y+ QTRSADE TT+ +C
Sbjct: 225 KEMRKEITKASIQEHQMGKTGGTQSDLF--TCGKCKKKNCTYTQVQTRSADEPMTTFVVC 282
Query: 111 PRCGHRCQ 118
CG+R +
Sbjct: 283 NECGNRWK 290
>gi|168027647|ref|XP_001766341.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682555|gb|EDQ68973.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 11 FCKFCGTMLRMESNHV------VCSSCKFKKNVQDVADREISYAVTAE--EIKRELGISL 62
FC C +L +E+ + C +C + V DR+IS + + E+ LG
Sbjct: 3 FCPTCANLLLVENPSMGRPLRYFCPTCPYVY----VVDRKISKKLKLKKKEVDDVLG--- 55
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQES 120
G+ + + C C + Y+ Q RSADE TT+Y C C HR +E+
Sbjct: 56 -----GEDAWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWKEN 110
>gi|16923938|ref|NP_476439.1| transcription elongation factor A protein 2 [Rattus norvegicus]
gi|28380169|sp|Q63799.1|TCEA2_RAT RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Protein S-II-T1; AltName: Full=Testis-specific
S-II; AltName: Full=Transcription elongation factor S-II
protein 2; AltName: Full=Transcription elongation factor
TFIIS.l
gi|712842|dbj|BAA02310.1| transcription elongation factor S-II [Rattus sp.]
Length = 299
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 282 PMTTYVVCNECGNRWK 297
>gi|15922591|ref|NP_378260.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii
str. 7]
gi|15623381|dbj|BAB67369.1| archaeal transcription factor S [Sulfolobus tokodaii str. 7]
Length = 112
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 11 FCKFCGTMLRMESNH----VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+++ + ++ C C +++ +I V ++ L + P
Sbjct: 3 FCPKCGSIMVPKKDNGKTMYKCPKCGYEEESTSSGSMKIKTVVKHSIKEKTLVVDGDAPP 62
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G Q++K C C N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 63 AG----AQITK-GVTCPACGNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 110
>gi|115447857|ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|50251233|dbj|BAD27819.1| putative DNA-directed RNA polymerase III [Oryza sativa Japonica
Group]
gi|50251924|dbj|BAD27861.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113537239|dbj|BAF09622.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|215708708|dbj|BAG93977.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765354|dbj|BAG87051.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 110
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 18/114 (15%)
Query: 11 FCKFCGTMLRMESN------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC CG +L+++ C +C + V++ ++ A +K+E+ +F
Sbjct: 3 FCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKNKIVKK------ARLVKKEVE-PIFS 55
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
K K C +CQN E YY Q RSADE +T+Y C C CQ
Sbjct: 56 DSDAMKNA---PKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKC--CREECQ 104
>gi|225719828|gb|ACO15760.1| Transcription elongation factor A protein 1 [Caligus clemensi]
Length = 296
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 54 IKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+K+ + S Q QG K T L K C KC + Y+ QTRSADE TT+ +C C
Sbjct: 236 VKQGIDASQLAQIQGTK--TDLLK----CGKCGKSDCTYNQIQTRSADEPMTTFVLCNAC 289
Query: 114 GHRCQ 118
G+R +
Sbjct: 290 GNRWK 294
>gi|3347834|gb|AAC64679.1| transcription elongation factor S-II [Xenopus laevis]
Length = 289
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ +T E I+ E G TQ ++ CEKC+ Y+ QTRSADE
Sbjct: 222 RELRNTMTQEAIR--------EHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADE 271
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 272 PMTTFVLCNECGNR 285
>gi|74210421|dbj|BAE23395.1| unnamed protein product [Mus musculus]
Length = 273
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 206 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 255
Query: 103 GQTTYYICPRCGHR 116
TTY +C CG+R
Sbjct: 256 PMTTYVVCNECGNR 269
>gi|148675493|gb|EDL07440.1| transcription elongation factor A (SII), 2 [Mus musculus]
Length = 298
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 231 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 280
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 281 PMTTYVVCNECGNRWK 296
>gi|354500641|ref|XP_003512407.1| PREDICTED: transcription elongation factor A protein 2-like
[Cricetulus griseus]
Length = 299
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCSKCKKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 282 PMTTYVVCNECGNRWK 297
>gi|156564607|gb|ABU80627.1| transcription elongation factor TFIIS [Artemia franciscana]
Length = 108
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C KC Y+ QTRSADE TT+ +C CGHR
Sbjct: 70 CGKCHKRNCTYNQLQTRSADEPMTTFVLCNECGHR 104
>gi|84998394|ref|XP_953918.1| hypothetical protein [Theileria annulata]
gi|65304916|emb|CAI73241.1| hypothetical protein, conserved [Theileria annulata]
Length = 250
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
VK CEKC + YST Q RSADEG + Y C +C +R
Sbjct: 207 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKCKNR 245
>gi|6678235|ref|NP_033352.1| transcription elongation factor A protein 2 [Mus musculus]
gi|28380213|sp|Q9QVN7.2|TCEA2_MOUSE RecName: Full=Transcription elongation factor A protein 2; AltName:
Full=Protein S-II-T1; AltName: Full=Testis-specific
S-II; AltName: Full=Transcription elongation factor S-II
protein 2; AltName: Full=Transcription elongation factor
TFIIS.l
gi|2055284|dbj|BAA19752.1| S-II-T1 [Mus musculus]
gi|5381259|dbj|BAA82313.1| transcription elongation factor [Mus musculus]
gi|127798625|gb|AAH49617.2| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|127799183|gb|AAH65786.2| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|187951073|gb|AAI38506.1| Transcription elongation factor A (SII), 2 [Mus musculus]
gi|187953941|gb|AAI38505.1| Transcription elongation factor A (SII), 2 [Mus musculus]
Length = 299
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 282 PMTTYVVCNECGNRWK 297
>gi|367043846|ref|XP_003652303.1| hypothetical protein THITE_2113636 [Thielavia terrestris NRRL 8126]
gi|346999565|gb|AEO65967.1| hypothetical protein THITE_2113636 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ YS QTRSADE TT+ C CGHR +
Sbjct: 255 CNKCKQKKVSYSQAQTRSADEPMTTFCECTVCGHRWK 291
>gi|440462614|gb|ELQ32621.1| hypothetical protein OOU_Y34scaffold01081g3 [Magnaporthe oryzae
Y34]
gi|440477488|gb|ELQ58534.1| hypothetical protein OOW_P131scaffold01585g3 [Magnaporthe oryzae
P131]
Length = 185
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG L + N V C N + + VT R+ L + G+K
Sbjct: 5 FCNDCGDTLPISGNPEVKCDCCGNMNKNTLIN------VTTVSSSRDFDSPLRLKEYGNK 58
Query: 71 G------ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E + C C + + Y+T QTR ADEG T +Y C C
Sbjct: 59 DAMASRPEMNWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGC 107
>gi|269864605|ref|XP_002651632.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
gi|269865006|ref|XP_002651772.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|269865352|ref|XP_002651894.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|269865514|ref|XP_002651950.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|269865596|ref|XP_002651979.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|269865710|ref|XP_002652019.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|269866373|ref|XP_002652251.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|269866849|ref|XP_002652411.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062559|gb|EED41644.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062875|gb|EED41804.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|220063308|gb|EED42038.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|220063381|gb|EED42077.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|220063434|gb|EED42106.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|220063681|gb|EED42162.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|220063904|gb|EED42283.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|220064167|gb|EED42425.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
Length = 89
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 21 MESNHVVCSSCKFKKNVQDV-ADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVK 79
M +VC +CK++ + + E+ +EI FE+P G+ G +
Sbjct: 1 MSDQIIVCPNCKYENKYSETKLESEVFVTTKTDEI--------FEKPSGELGNFEAID-- 50
Query: 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
C +C + + QTRSADE T +Y C C H
Sbjct: 51 --CPRCGHGRALFKEVQTRSADEATTVFYQCVLCEH 84
>gi|159162918|pdb|1QYP|A Chain A, Thermococcus Celer Rpb9, Nmr, 25 Structures
Length = 57
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 75 LSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 51
>gi|71033475|ref|XP_766379.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353336|gb|EAN34096.1| hypothetical protein TP01_0858 [Theileria parva]
Length = 252
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
VK CEKC + YST Q RSADEG + Y C +C +R
Sbjct: 209 VKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKCKNRV 248
>gi|357622101|gb|EHJ73702.1| hypothetical protein KGM_17705 [Danaus plexippus]
Length = 124
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 11 FCKFCGTML--RMESNHVV----CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC+ C ML R + N+ V C +C +K+ +AD S V +I E+
Sbjct: 17 FCQECNNMLYPREDKNNKVLQYACRNCDYKQ----LAD---SNCVYVNKIMHEVDELTHI 69
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P T C KC + E + QTR A+E YY+C C HR E
Sbjct: 70 NPDVVSDPTLPRTKDHVCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 124
>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
Length = 342
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTA--EEIKRELGISL 62
FC CG +L +E + C++C + ++ R+I+ +E+ LG
Sbjct: 2 LFFCPSCGNILIIEEDTSCHRFTCNTCPYISKIK----RKITAKTFPRLKEVDHVLG--- 54
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
G + C +C + Y+ QTRSADE TT+Y C C H
Sbjct: 55 -----GKAAWENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKC--CNH 100
>gi|348560474|ref|XP_003466038.1| PREDICTED: transcription elongation factor A protein 1-like [Cavia
porcellus]
Length = 425
Score = 41.2 bits (95), Expect = 0.089, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C KC+ Y+ QTRSADE TT+ +C CG+R
Sbjct: 360 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 394
>gi|363749925|ref|XP_003645180.1| hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888813|gb|AET38363.1| Hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
Length = 112
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 27/123 (21%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC +C ML + + + C SC ++ ++ ++ DR+ + +++ LG
Sbjct: 4 FCPYCKNMLLVSKSDSGLYKMSCPSCPYEFPIEGIEIYDRQ---TLPRKQVDDALG---- 56
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEM------YYSTRQTRSADEGQTTYYICPRCGHRC 117
GE V + +C N E Y+ Q RSADE TT+Y C CG++
Sbjct: 57 -------GEGAWDNVDQTAIQCPNHETCGGEKAYFFQLQIRSADEPMTTFYKCVTCGNKW 109
Query: 118 QES 120
+E+
Sbjct: 110 REN 112
>gi|284998325|ref|YP_003420093.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
gi|284446221|gb|ADB87723.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
Length = 111
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 11 FCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +M+ + N C+ C ++ ++V + I + +E + + E+
Sbjct: 3 FCPKCNSMMVPKKSNGKNTYRCTKCGYE---EEVPETTIVVTSKVKHSTKEKTL-ILEEE 58
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ G ++ V C C+N E Y+ QTR ADE T +Y C +CG +E
Sbjct: 59 EMPSGAQKIKGV--LCPSCKNDEAYFWILQTRRADEPPTRFYKCTKCGKVWRE 109
>gi|255948316|ref|XP_002564925.1| Pc22g09130 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591942|emb|CAP98201.1| Pc22g09130 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 121
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ R C +C +M+Y+T Q RSADEG T +Y C CG +
Sbjct: 79 IDRTCSECGRKQMFYTTVQLRSADEGSTVFYRCV-CGFK 116
>gi|156094625|ref|XP_001613349.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802223|gb|EDL43622.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 454
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 57 ELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E +SLF++ Q K C C N +++ QTRSADEG T Y CP C
Sbjct: 394 EKNVSLFKEDQNQAYNITYEK----CTDCGNDFLHFINIQTRSADEGSTIIYFCPNC 446
>gi|126465542|ref|YP_001040651.1| DNA-directed RNA polymerase subunit M [Staphylothermus marinus F1]
gi|126014365|gb|ABN69743.1| DNA-directed RNA polymerase, subunit M [Staphylothermus marinus F1]
Length = 104
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 22 ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA 81
++ ++VC+ C ++ + + +V E +E + + E+ + +G +V
Sbjct: 8 DTYYLVCTRCGYRVKATEKDLKLYRISVKIEHSNKEKTVVVDEE-ERLRGLPITREV--T 64
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C KC E YY QTR+ADE T +Y C RCG+ +E
Sbjct: 65 CPKCGYHEAYYWIVQTRAADEPPTRFYKCRRCGYVWRE 102
>gi|258577433|ref|XP_002542898.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903164|gb|EEP77565.1| predicted protein [Uncinocarpus reesii 1704]
Length = 323
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+++ C KC + E+ Y+ Q RSADEG T +Y C +C HR
Sbjct: 259 QIEMDCVKCPSREVTYAQVQLRSADEGSTIFYTCMKCKHR 298
>gi|255540601|ref|XP_002511365.1| DNA-directed RNA polymerase I, putative [Ricinus communis]
gi|223550480|gb|EEF51967.1| DNA-directed RNA polymerase I, putative [Ricinus communis]
Length = 75
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 23/74 (31%)
Query: 47 YAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTT 106
+ E+++R+LGIS FE K + +M + RSADEGQTT
Sbjct: 25 FGSRTEDMRRDLGISSFEG------------------KIEVKDM-----EMRSADEGQTT 61
Query: 107 YYICPRCGHRCQES 120
+Y CP+C H E+
Sbjct: 62 FYHCPKCLHTFSEN 75
>gi|429962884|gb|ELA42428.1| transcription elongation factor S-II [Vittaforma corneae ATCC
50505]
Length = 274
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ + YS QTRS DE TT+ C CGHR +
Sbjct: 237 CSKCKQKKCTYSQLQTRSCDEPMTTFVTCTNCGHRWK 273
>gi|328773726|gb|EGF83763.1| hypothetical protein BATDEDRAFT_8263 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 11 FCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L + E N + C SC + V+ ++ + + T +++ G
Sbjct: 3 FCPQCANLLLIQAGNEGNELFCQSCPYICRVEKSLNKRLVF--TRKDVDDVFG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ + + C KC++ ++ Q RSADE + ++ C +C ++ +E
Sbjct: 54 -GEGSWENVDQTDATCPKCEHSRAFFMQIQIRSADEPMSIFFRCCKCANQWREG 106
>gi|289739683|gb|ADD18589.1| RNA polymerase III subunit C11 [Glossina morsitans morsitans]
Length = 108
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRME---SNH-VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L +E SN+ C++C + N+ + + +E+ +G
Sbjct: 2 LLFCPNCSNILLVEQGVSNYRFSCNTCPYIFNISKKTSTKTFPRL--KEVDHVMG----- 54
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQE 119
G + C C + + Y+ QTRSADE TT+Y C CGH ++
Sbjct: 55 ---GAAAWENVDSTDADCPACSHKKAYFMQMQTRSADEPMTTFYKCANQLCGHNWRD 108
>gi|118791506|ref|XP_319787.3| AGAP009035-PA [Anopheles gambiae str. PEST]
gi|116117634|gb|EAA14772.3| AGAP009035-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CGHR +
Sbjct: 277 CGKCKKRNCTYNQLQTRSADEPMTTFVMCNECGHRWK 313
>gi|323453395|gb|EGB09267.1| hypothetical protein AURANDRAFT_24870 [Aureococcus anophagefferens]
Length = 112
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 31/125 (24%)
Query: 11 FCKFCGTMLRME---------SNHVVCSSCKF-----KKNVQDVADREISYAVTAEEIKR 56
FC + GT+L++ C C + KK+ DV T ++I
Sbjct: 3 FCPYDGTLLQVHIFAQGTPASELRFFCPLCPYIHSPKKKHALDVP-------TTRKKIDD 55
Query: 57 ELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CG 114
+G GD + + C C + E ++ Q RSADE TT++ C + CG
Sbjct: 56 IMG--------GDAAWENVDRTAVTCPACSHGEAFFMQLQIRSADEPMTTFFKCAKTGCG 107
Query: 115 HRCQE 119
HR E
Sbjct: 108 HRWNE 112
>gi|209880253|ref|XP_002141566.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
gi|209557172|gb|EEA07217.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
Length = 256
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K+K C KC + E +++ Q RSADEG T Y C +C +R
Sbjct: 212 KIKEICPKCSHNEAFFTQFQARSADEGTTVMYECCKCHYR 251
>gi|380473596|emb|CCF46211.1| transcription factor S-II [Colletotrichum higginsianum]
Length = 122
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 9 FLFCKFCGTML----RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E N + C C + +D + I + +L L
Sbjct: 7 LVFCHDCGNLLPASMGTEKNILTCDCCG--ADNKDTGSKTIVTQTKPSDFPSQLRQKLQS 64
Query: 65 QPQG-DKGETQL-SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q D+ + ++ C KC E+ ++ Q RSADEG T ++ C CG +
Sbjct: 65 NVQAVDRANVNTEATIRETCPKCGREEVRFTAVQLRSADEGSTIFFTCD-CGFK 117
>gi|307352937|ref|YP_003893988.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
gi|307156170|gb|ADN35550.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
Length = 104
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
+FC C +++ + + C+ C F+K ++D R V E E I + E +
Sbjct: 1 MMFCPECKGLMKSSNGKLKCTKCGFEKEIED---RSKMMKVRTME---EKDIVIVEDTEE 54
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L C +C + Y+ RQ RSADE + ++ C +C + +E
Sbjct: 55 I---ATLPTTNVRCPECGHDTAYWWLRQLRSADESEVRFFKCVKCKYTWRE 102
>gi|340914730|gb|EGS18071.1| putative transcription elongation factor [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 303
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ YS QTRSADE TT+ C CGHR +
Sbjct: 265 CSKCKQKKVSYSQAQTRSADEPMTTFCECTVCGHRWK 301
>gi|196008337|ref|XP_002114034.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
gi|190583053|gb|EDV23124.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
Length = 302
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC Y+ QTRSADE TT+ C CGHR +
Sbjct: 251 TCGKCHKKNCSYNQMQTRSADEPMTTFVFCHECGHRWK 288
>gi|116196354|ref|XP_001223989.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180688|gb|EAQ88156.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 139
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 9 FLFCKFCGTMLRM----ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISL 62
+FC CG +L E N + C C + +D + ++ + L +S+
Sbjct: 7 LIFCTDCGNLLPASMGSEKNILHCDCCGAEN--RDHPWKTVTTRTKPSDFPSALRQKLSI 64
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+ + K +T+ C KC + YS Q RSADEG T Y C CG RC
Sbjct: 65 VQTVERHKVQTERIDSNTECPKCGKTGIRYSEVQQRSADEGSTIIYNC-DCGERC 118
>gi|294462028|gb|ADE76569.1| unknown [Picea sitchensis]
Length = 110
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 18/114 (15%)
Query: 11 FCKFCGTMLRMESNHV------VCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC CG +L++E ++ C +C + ++ +++ + +E+ G
Sbjct: 3 FCPTCGNLLQIEHPYMSQSLRFFCPTCPYVFPIERKISKKLQ--LKKKEVDDVFG----- 55
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
G++ + + + C KC + ++ Q RSADE +T+Y C C ++CQ
Sbjct: 56 ---GEEAWKNVDRTEATCPKCSFGKAFFMQIQIRSADEPMSTFYKC--CNNQCQ 104
>gi|453082690|gb|EMF10737.1| transcription elongation factor S-II [Mycosphaerella populorum
SO2202]
Length = 312
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ YS QTRSADE TT+ C CGHR +
Sbjct: 274 CAKCKESKVSYSQAQTRSADEPLTTFCECTVCGHRWK 310
>gi|148697997|gb|EDL29944.1| transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 280 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 329
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 330 PMTTFVLCNECGNRWK 345
>gi|156040461|ref|XP_001587217.1| transcription elongation factor s-ii [Sclerotinia sclerotiorum
1980]
gi|154696303|gb|EDN96041.1| transcription elongation factor s-ii [Sclerotinia sclerotiorum 1980
UF-70]
Length = 301
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC ++ YS QTRSADE TT+ C CGHR +
Sbjct: 263 CGKCHQKKVSYSQAQTRSADEPMTTFCECQVCGHRWK 299
>gi|32189438|ref|NP_035672.1| transcription elongation factor A protein 3 [Mus musculus]
gi|28381402|sp|P23881.3|TCEA3_MOUSE RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3;
AltName: Full=Transcription elongation factor TFIIS.h
gi|3288547|emb|CAA11392.1| transcription elongation factor TFIIS.h [Mus musculus]
gi|12840988|dbj|BAB25037.1| unnamed protein product [Mus musculus]
gi|14789853|gb|AAH10807.1| Transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 280 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 329
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 330 PMTTFVLCNECGNRWK 345
>gi|400595463|gb|EJP63264.1| transcription factor S-II [Beauveria bassiana ARSEF 2860]
Length = 122
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L + N + C C + QD R + L L
Sbjct: 7 LVFCTDCGNLLPSTKGTDRNMLKCECCGAEN--QDTGARTTLTQSKPSDFPSFLRQKLQS 64
Query: 65 QPQG-DKGETQL-SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
Q ++ Q + V C KC E+ Y+ Q RSADEG T +Y+C CG+ QE+
Sbjct: 65 SVQAVERRNIQTDNTVNETCPKCGREEVRYTNVQLRSADEGSTLFYMCD-CGYTWQEN 121
>gi|323510295|dbj|BAJ78041.1| cgd3_2550 [Cryptosporidium parvum]
Length = 246
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K++ C +C + E +++ Q RSADEG T Y C +C HR
Sbjct: 202 KIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKCQHR 241
>gi|221052618|ref|XP_002261032.1| transcription factor IIS [Plasmodium knowlesi strain H]
gi|194247036|emb|CAQ38220.1| transcription factor IIS, putative [Plasmodium knowlesi strain H]
Length = 424
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 57 ELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
E +SLF++ Q K C C N +++ QTRSADEG T Y CP C
Sbjct: 364 EKNVSLFKEDQNQAYNITYEK----CTDCGNDFLHFINIQTRSADEGSTIIYFCPNC 416
>gi|157888820|dbj|BAF80886.1| tissue-specific transcription factor S-II [Mus musculus]
Length = 347
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 280 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 329
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 330 PMTTFVLCNECGNRWK 345
>gi|12832213|dbj|BAB22010.1| unnamed protein product [Mus musculus]
Length = 347
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 280 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 329
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 330 PMTTFVLCNECGNRWK 345
>gi|41055847|ref|NP_957280.1| transcription elongation factor A protein 2 [Danio rerio]
gi|28277993|gb|AAH46074.1| Transcription elongation factor A (SII), 2 [Danio rerio]
Length = 300
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 22/82 (26%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKR------ACEKCQNPEMYYSTRQ 96
+EI A+T E I+ E QLSKV C KC+ Y+ Q
Sbjct: 233 KEIRKALTKESIR----------------EHQLSKVGGTETDMFVCGKCKGKNCTYTQVQ 276
Query: 97 TRSADEGQTTYYICPRCGHRCQ 118
TRSADE TT+ +C CG+R +
Sbjct: 277 TRSADEPMTTFVLCNECGNRWK 298
>gi|297526173|ref|YP_003668197.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
gi|297255089|gb|ADI31298.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 22 ESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA 81
++ ++VC+ C +K + + +V E +E ++ ++ + +G +V
Sbjct: 8 DTYYLVCTRCGYKIKATEKDLKLYRISVKIEHSNKE-KTTVVDEEERLRGLPITREV--T 64
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C +C E YY QTR+ADE T +Y C RCG+ +E
Sbjct: 65 CPRCGYHEAYYWVVQTRAADEPPTRFYKCRRCGYVWRE 102
>gi|290462619|gb|ADD24357.1| Transcription elongation factor S-II [Lepeophtheirus salmonis]
Length = 291
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
A+ +K+ + S Q QG K T L K C KC Y+ QTRSADE TT+ +C
Sbjct: 228 ADFVKQGIDASQLAQIQGTK--TDLLK----CGKCLKRNCTYNQIQTRSADEPMTTFVLC 281
Query: 111 PRCGHRCQ 118
CG+R +
Sbjct: 282 NECGNRWK 289
>gi|367022660|ref|XP_003660615.1| hypothetical protein MYCTH_2035701, partial [Myceliophthora
thermophila ATCC 42464]
gi|347007882|gb|AEO55370.1| hypothetical protein MYCTH_2035701, partial [Myceliophthora
thermophila ATCC 42464]
Length = 119
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISL 62
+FC CG +L E N + C C +N +D + ++ + L +S+
Sbjct: 7 LIFCTDCGNLLPPSKGSEKNILHCDCCG-AENREDQPWKTVTTRTKPSDFPSALRQKLSI 65
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
+ + K +T+ C KC + YS Q RSADEG T Y C CG R
Sbjct: 66 VQTVERHKVQTERIDANTECPKCGKTGVRYSEVQQRSADEGSTIIYNC-DCGER 118
>gi|323453029|gb|EGB08901.1| hypothetical protein AURANDRAFT_25278 [Aureococcus anophagefferens]
Length = 173
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G K T+ + V+ C +C +P + + T Q RS DEGQT +Y C +C H+
Sbjct: 121 GPKKSTR-ATVEEECPECGHPVLEFYTMQMRSVDEGQTVFYECLKCRHK 168
>gi|322712166|gb|EFZ03739.1| putative DNA-directed RNA polymerase III subunit C11 [Metarhizium
anisopliae ARSEF 23]
Length = 110
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 9 FLFCKFCGTMLRME-----SNHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISL 62
LFC C +L + +N + C +C F+ + + V R + +R+ +
Sbjct: 2 LLFCPQCANILTVSLTNQRTNRLECRTCPFEHTITEPVFSRRV--------FERKEKEDV 53
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
F P G Q + + E C E + Q RSADE T+++ C CG+R +E+
Sbjct: 54 FGGP-GAWDNAQKGRAQCPAEGCDGDEAAFFQVQIRSADEPMTSFFKCMTCGNRWREN 110
>gi|209732138|gb|ACI66938.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 93
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P ++ QTRSADE TT+Y C CGHR ++
Sbjct: 40 GAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGHRWRD 93
>gi|145344997|ref|XP_001417010.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577236|gb|ABO95303.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 120
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 29/129 (22%)
Query: 9 FLFCKFCGTMLRMESN-----------------HVVCSSCKFKKNVQD-VADREISYAVT 50
FC C +L +E + C+SC + +V D V R + T
Sbjct: 2 LTFCPTCANLLLLERGAADASTSGAGAGVGGAVRLRCASCPYAYDVVDGVKQRVDARKKT 61
Query: 51 AEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC 110
+++ LG GD + K C C + E Y+ Q RSADE + +Y C
Sbjct: 62 VDDV---LG--------GDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKC 110
Query: 111 PRCGHRCQE 119
+C + +E
Sbjct: 111 VKCARQWRE 119
>gi|66359276|ref|XP_626816.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46228364|gb|EAK89263.1| hypothetical protein with carboxy terminus motif shared with
DNA-directed RNA polymerase subunit and TFIIS
[Cryptosporidium parvum Iowa II]
Length = 203
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
K++ C +C + E +++ Q RSADEG T Y C +C HR
Sbjct: 159 KIQEICPECSHNEAFFTQFQARSADEGTTVMYECCKCQHR 198
>gi|167042511|gb|ABZ07236.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 59
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
Q +K E S ++ CEKC N E + + QTRSADE +T +Y C +C
Sbjct: 8 QANKME---STIRIDCEKCHNQEGVWWSLQTRSADEPETRFYRCIKCN 52
>gi|403221216|dbj|BAM39349.1| uncharacterized protein TOT_010000808 [Theileria orientalis strain
Shintoku]
Length = 253
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
VK CEKC + YST Q RSADEG + Y C +C +R
Sbjct: 210 VKYNCEKCGHDVHLYSTFQARSADEGMSIMYECLKCRNR 248
>gi|388254857|gb|AFK24971.1| putative transcription termination factor TFIIS [uncultured
archaeon]
Length = 89
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
C +C+N ++ QTRSADE T +Y C +CGH
Sbjct: 50 CPQCKNGMAFWWMLQTRSADEATTQFYRCTKCGH 83
>gi|322511107|gb|ADX06420.1| putative transcription elongation factor TFIIS_C domain-containing
protein [Organic Lake phycodnavirus 2]
Length = 168
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA-----CEKCQNPEMYYSTRQT 97
+EIS+ T +EI + S+ E+ K+K + C KC++ E Y QT
Sbjct: 88 KEISFK-TEQEIYPDYWNSITEEKITHLDNKYFPKIKASTDKFKCGKCKSKECTYYQLQT 146
Query: 98 RSADEGQTTYYICPRCGHRCQ 118
RSADE TT+ C CG+R +
Sbjct: 147 RSADEPMTTFVTCISCGNRWK 167
>gi|422294442|gb|EKU21742.1| DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis
gaditana CCMP526]
Length = 106
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 11 FCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC C +L +E + C +C + + + + + +E+ LG
Sbjct: 3 FCPICSNLLLVELGEQNFRFCCQTCPYISVITKKISKTMK--LKRKEVDDVLG------- 53
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + AC C + E ++ Q RSADE TT+Y C C +R
Sbjct: 54 -GEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANR 102
>gi|390348322|ref|XP_799219.3| PREDICTED: transcription elongation factor S-II-like
[Strongylocentrotus purpuratus]
Length = 306
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ C CGHR +
Sbjct: 267 TCGKCRKKNCTYNQMQTRSADEPMTTFVFCNDCGHRWK 304
>gi|374634175|ref|ZP_09706540.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
gi|373523963|gb|EHP68883.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
Length = 100
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C C+N E+Y+ QTR+ADE T +Y C RCG +E
Sbjct: 60 VCPSCKNDEVYFWMVQTRAADEPPTRFYRCTRCGKTWRE 98
>gi|332796909|ref|YP_004458409.1| transcription termination factor Tfs [Acidianus hospitalis W1]
gi|332694644|gb|AEE94111.1| transcription termination factor Tfs [Acidianus hospitalis W1]
Length = 100
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 28 CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA-CEKCQ 86
C C +++ V+ + I+ + E ++ L + E PQG + K+K C C+
Sbjct: 15 CLKCGYEEEVK--SSEVITTKIKHSETEKTLVLEE-EMPQGAQ------KIKGVICPNCK 65
Query: 87 NPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
N E Y+ QTR+ADE T +Y C +CG +E
Sbjct: 66 NDEAYFWILQTRAADEPATRFYKCTKCGKVWRE 98
>gi|326917624|ref|XP_003205096.1| PREDICTED: transcription elongation factor A protein 1-like
[Meleagris gallopavo]
Length = 335
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
C KC+ Y+ QTRSADE TT+ +C CG+R +++
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKQA 304
>gi|124505291|ref|XP_001351387.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|6562711|emb|CAB62850.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 320
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 26/125 (20%)
Query: 3 DPLGRDFLFCKFCGTML----------RMESNHVVCSSCK----FKKNVQDVADREISYA 48
+ D + C +CG++L N++ S + F KN +D +I+
Sbjct: 200 NEFSYDIIKCIYCGSVLGDIEILFNQFNNNENYIELYSYREKYIFDKNKKDYWKNKIT-- 257
Query: 49 VTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYY 108
SLF++ + +T + C C N +++ QTRSADEG T Y
Sbjct: 258 ------SFNKNTSLFKEEE----KTAYNITYEKCLDCGNDFLHFINIQTRSADEGSTIIY 307
Query: 109 ICPRC 113
CP C
Sbjct: 308 FCPNC 312
>gi|62543505|ref|NP_001015008.1| transcription elongation factor A protein 3 [Rattus norvegicus]
gi|60552718|gb|AAH91180.1| Transcription elongation factor A (SII), 3 [Rattus norvegicus]
Length = 348
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 281 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 330
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 331 PMTTFVLCNECGNRWK 346
>gi|21227500|ref|NP_633422.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
gi|20905876|gb|AAM31094.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
Length = 107
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +M+ + + C C ++ A +S A + E+ + EQ G
Sbjct: 6 FCTKCKSMMFPKDGNYHCRKCGSTIPIESDAKNFVSKAKIDD---HEVVVLEGEQTSG-- 60
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L C +C N + RQ RSADE +T ++ C +CG+ +E
Sbjct: 61 ----LPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWRE 105
>gi|146304608|ref|YP_001191924.1| DNA-directed RNA polymerase M [Metallosphaera sedula DSM 5348]
gi|145702858|gb|ABP96000.1| DNA-directed RNA polymerase, subunit M [Metallosphaera sedula DSM
5348]
Length = 110
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 11 FCKFCGTMLRMESNHVV----CSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLFE 64
FC C +M+ + V C C +++ Q ++ ++ +A T +R L + E
Sbjct: 3 FCPKCKSMMTPRKVNGVTIYKCVKCGYEEQGQRSEIISSKVKHAAT----ERTLVLEDEE 58
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
P G + + C C+N E+++ QTR+ADE T +Y C +CG +E
Sbjct: 59 VPAGTQKMKGV-----MCPNCRNDEVFFWMLQTRAADEPPTRFYKCTKCGKVWRE 108
>gi|428169791|gb|EKX38722.1| DNA-directed RNA polymerase III subunit RPC11 [Guillardia theta
CCMP2712]
Length = 109
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 14/107 (13%)
Query: 10 LFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
+FC +C +L +E C +C ++ + + + +++ LG S
Sbjct: 1 MFCPYCANLLVVEPASQGMRFACKTCPYEHKILKKIKKTTP--LEQKKVDDVLGDSF--- 55
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
++ V C KC +P+ Y+ + Q RSADE T +Y C R
Sbjct: 56 -----ANASMTDVIGGCPKCGHPKAYFFSIQIRSADEPATRFYRCAR 97
>gi|301620068|ref|XP_002939405.1| PREDICTED: transcription elongation factor A protein 3-like
[Xenopus (Silurana) tropicalis]
Length = 453
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
CEKC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 415 CEKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 451
>gi|448735314|ref|ZP_21717530.1| transcription factor TFIIS [Halococcus salifodinae DSM 8989]
gi|445798652|gb|EMA49049.1| transcription factor TFIIS [Halococcus salifodinae DSM 8989]
Length = 86
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 40 VADREISYAVTAEEIKRELGISLFEQPQ-----GDKGETQLSKVKRACEKCQNPEMYYST 94
+AD E YA EEI E G + ++ D + L C +C N Y+
Sbjct: 1 MADDE--YADLFEEITGETGTTESQEQSEIIDVTDAEDRGLPTTDVECPECDNDRAYWYM 58
Query: 95 RQTRSADEGQTTYYICPRCGHRCQES 120
+Q R+ADE +T +++C C H +E
Sbjct: 59 QQIRAADESETRFFVCTECEHSWRED 84
>gi|325184771|emb|CCA19262.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 107
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ--- 67
FC CG +L +E + VC+ C ++ A Y + I++ + + +
Sbjct: 3 FCPSCGNILLIEPS--VCALC-----LEVEASVRGLYMLCKTRIEKRVKLQRKQVDAILG 55
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
GD+ +++ + C C++ Y+ Q RSADE TT+Y C +C
Sbjct: 56 GDEAWDNVNQTEAWCPHCEHNHAYFMQIQIRSADEPSTTFYKCVQC 101
>gi|355572990|ref|ZP_09043958.1| transcription termination factor Tfs [Methanolinea tarda NOBI-1]
gi|354824002|gb|EHF08261.1| transcription termination factor Tfs [Methanolinea tarda NOBI-1]
Length = 103
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGD 69
+FC CG+++ + + C C + + + D D+ +I R + +
Sbjct: 1 MFCPECGSLMISSAGQLKCRKCGYNRKI-DKNDQM--------QITRTRREKEIVIVEEE 51
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L + C KC++ ++ RQ R+ADE + ++ C CGH +E
Sbjct: 52 GSVRTLPTIAVKCPKCEHNLAFWWLRQLRAADESEVRFFRCCECGHTWRE 101
>gi|116180542|ref|XP_001220120.1| hypothetical protein CHGG_00899 [Chaetomium globosum CBS 148.51]
gi|88185196|gb|EAQ92664.1| hypothetical protein CHGG_00899 [Chaetomium globosum CBS 148.51]
Length = 307
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ YS QTRSADE TT+ C CGHR +
Sbjct: 269 CGKCKQKKVSYSQAQTRSADEPMTTFCECTVCGHRWK 305
>gi|281207161|gb|EFA81344.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 108
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C ML +E + C +C + N+Q+ ++ I++ + + +F
Sbjct: 1 MLFCPSCANMLLVEKGEPNTRFYCPTCPYIFNIQNKVVTKVPL------IRKNIEVDVF- 53
Query: 65 QPQGDKGETQLSKVKRACEKC-QNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
GD + C C + +Y Q DE +TTYY C CG R
Sbjct: 54 --GGDDAWLDSQQTDAHCPTCKERRRVYLMEIQVYPIDEPKTTYYKCTICGGR 104
>gi|383319700|ref|YP_005380541.1| DNA-directed RNA polymerase subunit M [Methanocella conradii HZ254]
gi|379321070|gb|AFD00023.1| DNA-directed RNA polymerase, subunit M [Methanocella conradii
HZ254]
Length = 95
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 23 SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRAC 82
S + C C F+K A E E+ +RE+ I + + D G VK C
Sbjct: 5 SGVLKCRKCGFQKKP---ATSEAVIVGAPEKPQREMTIL---EGKEDAGLPTTEDVK--C 56
Query: 83 EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+C N + Y+ RQ RSADE + ++ C +CG +E
Sbjct: 57 PECGNQKAYWWMRQLRSADESEVRFFRCTQCGKTWRE 93
>gi|327279244|ref|XP_003224367.1| PREDICTED: transcription elongation factor A protein 1-like [Anolis
carolinensis]
Length = 341
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
+C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 265 SCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 302
>gi|365761585|gb|EHN03230.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 110
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C +L + S + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPSCNNLLLITSGDSGVYTLECRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CG+R +E+
Sbjct: 57 ------GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGNRWKEN 110
>gi|387015674|gb|AFJ49956.1| Transcription elongation factor A protein 1 [Crotalus adamanteus]
Length = 304
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
+C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 265 SCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 302
>gi|326931955|ref|XP_003212089.1| PREDICTED: transcription elongation factor A protein 2-like
[Meleagris gallopavo]
Length = 274
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 207 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 256
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 257 PMTTFVVCNECGNR 270
>gi|432094021|gb|ELK25813.1| Transcription elongation factor A protein 2 [Myotis davidii]
Length = 131
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 63 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCSKCRKKNCTYTQVQTRSSDE 112
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 113 PMTTFVVCNECGNR 126
>gi|213623950|gb|AAI70441.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ +T E I+ E G TQ ++ CEKC+ Y+ QTRSADE
Sbjct: 578 RELRNTMTQEAIR--------EHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADE 627
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 628 PMTTFVLCNECGNRWK 643
>gi|118100673|ref|XP_417425.2| PREDICTED: transcription elongation factor A protein 2 [Gallus
gallus]
Length = 300
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 233 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 282
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 283 PMTTFVVCNECGNR 296
>gi|452836512|gb|EME38456.1| hypothetical protein DOTSEDRAFT_75850 [Dothistroma septosporum
NZE10]
Length = 313
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ + YS QTRSADE TT+ C CGHR +
Sbjct: 275 CGKCKQSRVAYSQAQTRSADEPLTTFCECTMCGHRWK 311
>gi|147904545|ref|NP_001090166.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|10801727|dbj|BAB16755.1| transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ +T E I+ E G TQ ++ CEKC+ Y+ QTRSADE
Sbjct: 578 RELRNTMTQEAIR--------EHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADE 627
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 628 PMTTFVLCNECGNRWK 643
>gi|213625366|gb|AAI70443.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ +T E I+ E G TQ ++ CEKC+ Y+ QTRSADE
Sbjct: 578 RELRNTMTQEAIR--------EHQMAKTGGTQTDLLQ--CEKCKKKNCSYNQVQTRSADE 627
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 628 PMTTFVLCNECGNRWK 643
>gi|260797171|ref|XP_002593577.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
gi|229278803|gb|EEN49588.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
Length = 588
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 11/81 (13%)
Query: 49 VTAEEIK----RELGISLFEQPQGDK-----GETQLSKVKRACEKCQNPEMYYSTRQTRS 99
+TAEE+ +EL SL ++ D G TQ +K C KC+ + Y+ QTRS
Sbjct: 174 MTAEEMASPEMKELRQSLTKEAIRDAQMATTGGTQTDLLK--CGKCKKRNVTYNQVQTRS 231
Query: 100 ADEGQTTYYICPRCGHRCQES 120
ADE TT+ C CG+R +E+
Sbjct: 232 ADEPMTTFCYCNECGNRWKEN 252
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 49 VTAEEIK----RELGISLFEQPQGDK-----GETQLSKVKRACEKCQNPEMYYSTRQTRS 99
+TAEE+ +EL SL ++ D G TQ +K C KC+ + Y+ QTRS
Sbjct: 423 MTAEEMASPEMKELRQSLTKEAIRDAQMATTGGTQTDLLK--CGKCKKRNVTYNQVQTRS 480
Query: 100 ADEGQTTYYICPRCGHRCQ 118
ADE TT+ C CG+R +
Sbjct: 481 ADEPMTTFCYCNECGNRWK 499
>gi|297666066|ref|XP_002811364.1| PREDICTED: transcription elongation factor A protein 3-like [Pongo
abelii]
Length = 74
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T + C KC+ Y+ QTRSADE
Sbjct: 7 RELRNAMTQEAIR--------EHQMAKTGGTTTDLFQ--CSKCKKKNCTYNQVQTRSADE 56
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 57 PMTTFVLCNECGNR 70
>gi|289742185|gb|ADD19840.1| transcription elongation factor tFIIS [Glossina morsitans
morsitans]
Length = 326
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRS+DE TT+ +C CGHR +
Sbjct: 288 CGKCKKRNCTYNQLQTRSSDEPMTTFVMCNECGHRWK 324
>gi|330936351|ref|XP_003305354.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
gi|311317653|gb|EFQ86540.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
Length = 108
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 49/133 (36%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESNHVVCSSCKF---------------KKNVQDVADREIS 46
DP DF+ + N VC +C + KK+V+DV + +
Sbjct: 10 GDPTTADFV-----------DQNRFVCLTCPYQFVIEGRYFERKYMKKKDVEDVIGGKDA 58
Query: 47 YAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTT 106
+A DK E Q EKC+N E Y+ Q RSADE T
Sbjct: 59 WANV------------------DKTEVQCPN-----EKCRNHEAYWYQLQIRSADEPMTA 95
Query: 107 YYICPRCGHRCQE 119
+Y C +CG +E
Sbjct: 96 FYKCTQCGKEWRE 108
>gi|302675000|ref|XP_003027184.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
gi|300100870|gb|EFI92281.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
Length = 110
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +L + S N C++C ++ + T +KR+ +F
Sbjct: 1 MLFCPTCANLLVISSDTGLNKWSCNTCPYEFPI-------TKQMTTRTRMKRKEIDDVF- 52
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYI----CPRCGHRCQE 119
GD+ CE C + Y+ Q RSADE TT+ + C CG+R +E
Sbjct: 53 --GGDEQWKHAQSTMAQCEACSHDRAYFYQLQIRSADEPMTTWALIIFRCASCGNRWRE 109
>gi|119615454|gb|EAW95048.1| transcription elongation factor A (SII), 3, isoform CRA_a [Homo
sapiens]
Length = 79
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T + C KC+ Y+ QTRSADE
Sbjct: 12 RELRNAMTQEAIR--------EHQMAKTGGTTTDLFQ--CSKCKKKNCTYNQVQTRSADE 61
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 62 PMTTFVLCNECGNR 75
>gi|432867255|ref|XP_004071102.1| PREDICTED: transcription elongation factor A protein 2-like
[Oryzias latipes]
Length = 309
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 72 ETQLSKVKRA------CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E QLSKV C KC Y+ QTRSADE TT+ +C CG+R
Sbjct: 255 EHQLSKVGGTETDMFICSKCHGKNCTYTQVQTRSADEPMTTFVLCNGCGNR 305
>gi|312087389|ref|XP_003145453.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
gi|307759383|gb|EFO18617.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
Length = 108
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 9 FLFCKFCGTMLRMESN----HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC CG+ L++E C +C + + + + Y +++ LG
Sbjct: 2 LLFCPECGSSLQVEEGSNCYQFTCHNCPYVQPITKLIKSR--YYPKLKDLDEVLG----- 54
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPR--CGHRCQE 119
G C +C Y+ QTRSADE T +Y C C HR +E
Sbjct: 55 ---GPGAWENAQITDERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAHRWKE 108
>gi|157119415|ref|XP_001653370.1| transcription elongation factor s-ii [Aedes aegypti]
gi|108883153|gb|EAT47378.1| AAEL001496-PA [Aedes aegypti]
Length = 303
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRS+DE TT+ +C CGHR +
Sbjct: 265 CGKCKKRNCTYNQLQTRSSDEPMTTFVLCNECGHRWK 301
>gi|296207010|ref|XP_002750408.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Callithrix jacchus]
gi|332807943|ref|XP_001165502.2| PREDICTED: transcription elongation factor A protein 3-like isoform
2, partial [Pan troglodytes]
Length = 75
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T + C KC+ Y+ QTRSADE
Sbjct: 8 RELRNAMTQEAIR--------EHQMAKTGGTTTDLFQ--CSKCKKKNCTYNQVQTRSADE 57
Query: 103 GQTTYYICPRCGHR 116
TT+ +C CG+R
Sbjct: 58 PMTTFVLCNECGNR 71
>gi|253744950|gb|EET01076.1| Transcription factor TFIIS [Giardia intestinalis ATCC 50581]
Length = 346
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 52 EEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICP 111
EEI + + F Q G K C+KC+ + +QTRSADE T Y C
Sbjct: 289 EEIMASVDLKRFVQHTGIK-----------CKKCKQETVVRLEKQTRSADEATTIEYTCS 337
Query: 112 RCGHRCQ 118
CGHR +
Sbjct: 338 SCGHRWR 344
>gi|327271917|ref|XP_003220733.1| PREDICTED: transcription elongation factor A protein 2-like [Anolis
carolinensis]
Length = 327
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 282 PMTTFVVCNECGNRWK 297
>gi|302765431|ref|XP_002966136.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
gi|300165556|gb|EFJ32163.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
Length = 107
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 19/116 (16%)
Query: 11 FCKFCGTMLRMESN---HVVCSSCKFKKNVQDVADREIS--YAVTAEEIKRELGISLFEQ 65
FC C ++L +E C +C + N+ D EI+ + +E+ LG
Sbjct: 3 FCPTCSSLLLVEHAARLRYFCPTCAYIYNI----DHEITKRIPLKNKEMDDILG------ 52
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
+ + C KC + Y+ Q RSADE T +Y C P C +R +E
Sbjct: 53 --SEDAWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNPDCSYRWRE 106
>gi|340376666|ref|XP_003386853.1| PREDICTED: transcription elongation factor A protein 2-like
[Amphimedon queenslandica]
Length = 314
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC Y+ QTRSADE TT+ +C CGHR +
Sbjct: 276 CGKCGKRNCSYNQMQTRSADEPMTTFVLCNECGHRWK 312
>gi|154320754|ref|XP_001559693.1| transcription elongation factor S-II [Botryotinia fuckeliana
B05.10]
gi|347838992|emb|CCD53564.1| similar to transcription elongation factor s-ii [Botryotinia
fuckeliana]
Length = 301
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC ++ YS QTRSADE TT+ C CGHR +
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQVCGHRWK 299
>gi|357485205|ref|XP_003612890.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355514225|gb|AES95848.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 106
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 76 SKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
K C C++P+ Y +QTRSADE T +Y C +CGH+ +E
Sbjct: 61 PKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKWKE 106
>gi|300708714|ref|XP_002996531.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
gi|239605840|gb|EEQ82860.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
Length = 105
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 10 LFCKFCGTMLRMESNHV----VCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC C +L ++ ++ +C++C ++ + V ++ V A ++
Sbjct: 2 FFCPLCTNILAIDKLNIQTAFICNTCPYQYKINMVFNKSARNNVIA-----------VDK 50
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G+ S ++ C KC + + + QTRSADE T +Y C C +E+
Sbjct: 51 VLGEDEYKYASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYECVLCKTNWKEN 105
>gi|221041960|dbj|BAH12657.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C KC+ Y+ QTRSADE TT+ +C CG+R
Sbjct: 79 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 113
>gi|197129381|gb|ACH45879.1| putative transcription elongation factor A2 [Taeniopygia guttata]
Length = 300
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 233 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 282
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 283 PMTTFVVCNECGNRWK 298
>gi|302696049|ref|XP_003037703.1| hypothetical protein SCHCODRAFT_48804 [Schizophyllum commune H4-8]
gi|300111400|gb|EFJ02801.1| hypothetical protein SCHCODRAFT_48804, partial [Schizophyllum
commune H4-8]
Length = 119
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 5 LGRDFLFCKFCGTMLRMESNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
L LFC FCGT+L + + V C C ++ D EI+ + L
Sbjct: 1 LAGSLLFCPFCGTLLNIPRDGERVVECEQCGHEEPATSYEDIEITTRSHPDAFPSALRQK 60
Query: 62 LFEQPQ----GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
Q + GD+G L ++ R K E + RSADEG T +Y C C H
Sbjct: 61 RKTQTKHHETGDQG--TLVRMYRDFGK---REFAQPRSKLRSADEGSTIFYTCASCKH 113
>gi|401825647|ref|XP_003886918.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998075|gb|AFM97937.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 104
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +ML + N + C C + + +EI+ +V K + L +
Sbjct: 1 MLFCPLCSSMLVVRRQSMGNELSCRMCGYLYAI----SKEITKSVPMTPKKSD---GLID 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ D+ +SK + CE C + E+ + QTRSADE T +Y C RC
Sbjct: 54 E---DENLKFVSKCGKKCE-CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|119615455|gb|EAW95049.1| transcription elongation factor A (SII), 3, isoform CRA_b [Homo
sapiens]
Length = 396
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
C KC+ Y+ QTRSADE TT+ +C CG+R + S
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKVS 348
>gi|449274195|gb|EMC83478.1| Transcription elongation factor A protein 2, partial [Columba
livia]
Length = 282
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 217 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 266
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 267 PMTTFVVCNECGNRWK 282
>gi|149623576|ref|XP_001520478.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like,
partial [Ornithorhynchus anatinus]
Length = 68
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 84 KCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHR 116
KC++P Y+ QTRSADE TT+Y C +CGHR
Sbjct: 33 KCEHPRAYFMQIQTRSADEPMTTFYKCCNVQCGHR 67
>gi|395506561|ref|XP_003757600.1| PREDICTED: transcription elongation factor A protein 2 [Sarcophilus
harrisii]
Length = 300
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 233 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 282
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 283 PMTTFVVCNECGNRWK 298
>gi|348544613|ref|XP_003459775.1| PREDICTED: transcription elongation factor A protein 2-like
[Oreochromis niloticus]
Length = 308
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 72 ETQLSKVKRA------CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
E QLSKV C KC Y+ QTRSADE TT+ +C CG+R
Sbjct: 249 EHQLSKVGGTETDMFICSKCHGKSCTYTQVQTRSADEPMTTFVLCNDCGNR 299
>gi|426222790|ref|XP_004005565.1| PREDICTED: transcription elongation factor A protein 3 [Ovis aries]
Length = 375
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 291 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 327
>gi|84490030|ref|YP_448262.1| RpoM2 [Methanosphaera stadtmanae DSM 3091]
gi|84373349|gb|ABC57619.1| RpoM2 [Methanosphaera stadtmanae DSM 3091]
Length = 105
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG +L + + C C ++K + D D + Y + + ++ I D
Sbjct: 3 FCPNCGKVLLPKKGILHCYGCNYEKKLSD--DEKQDYVINKDVSDKQNIIVT------DD 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ C +C N E+ + Q +DE +T +Y C +CG+ + S
Sbjct: 55 SINTHPTTRGLCYRCGNRELEWWMVQMHRSDEAETRFYRCTKCGNTWRRS 104
>gi|302757165|ref|XP_002962006.1| hypothetical protein SELMODRAFT_437865 [Selaginella moellendorffii]
gi|302775328|ref|XP_002971081.1| hypothetical protein SELMODRAFT_441410 [Selaginella moellendorffii]
gi|300161063|gb|EFJ27679.1| hypothetical protein SELMODRAFT_441410 [Selaginella moellendorffii]
gi|300170665|gb|EFJ37266.1| hypothetical protein SELMODRAFT_437865 [Selaginella moellendorffii]
Length = 303
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
+LFE +G K E + K C KC E Y +QTRSADE TTY C C +R +
Sbjct: 246 ALFECERGMKQEATTDQFK--CGKCGRRECTYFQKQTRSADEPMTTYVTCVNCNNRWK 301
>gi|256071836|ref|XP_002572244.1| transcription elongation factor s-II [Schistosoma mansoni]
gi|360043833|emb|CCD81379.1| putative transcription elongation factor s-II [Schistosoma mansoni]
Length = 318
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ + Y+ QTRSADE TT+ C CGHR +
Sbjct: 280 CGKCKQTKCTYNQVQTRSADEPMTTFVYCNNCGHRWK 316
>gi|57530393|ref|NP_001006387.1| transcription elongation factor A protein 1 [Gallus gallus]
gi|53136812|emb|CAG32735.1| hypothetical protein RCJMB04_34f23 [Gallus gallus]
Length = 304
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 302
>gi|448575682|ref|ZP_21641962.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|448590957|ref|ZP_21650722.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
gi|445730623|gb|ELZ82211.1| DNA-directed RNA polymerase subunit M1 [Haloferax larsenii JCM
13917]
gi|445734453|gb|ELZ86012.1| DNA-directed RNA polymerase subunit M1 [Haloferax elongans ATCC
BAA-1513]
Length = 106
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC CG+++ + VC + K +++E + T + E+ + + + D
Sbjct: 3 FCDDCGSLMTPQDGVWVCPNGHEKARD---SEKEKTMVTTEGQESSEV-VDMSDVDNADI 58
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G T + C +C + Y +Q RSADE +T ++ C C H+ +E
Sbjct: 59 GPTTTA----ICPECGHDVARYEMKQIRSADESETRFFTCVECDHKWRE 103
>gi|126342511|ref|XP_001362232.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|226478976|emb|CAX72983.1| RNA polymerase II elongation factor [Schistosoma japonicum]
Length = 317
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ + Y+ QTRSADE TT+ C CGHR +
Sbjct: 279 CGKCKQTKCTYNQVQTRSADEPMTTFVYCNNCGHRWK 315
>gi|338728315|ref|XP_001489456.3| PREDICTED: transcription elongation factor A protein 1-like [Equus
caballus]
Length = 409
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
C KC+ Y+ QTRSADE TT+ +C CG+R +++
Sbjct: 328 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKDT 366
>gi|444729710|gb|ELW70117.1| Transcription elongation factor A protein 2 [Tupaia chinensis]
Length = 298
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I++ + G TQ + C KC Y+ QTRS+DE
Sbjct: 231 KEIRKAMTREAIRK--------HQKARTGGTQTDLI--TCGKCSGKSCTYTQAQTRSSDE 280
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 281 PMTTFVLCNECGNRWK 296
>gi|91834|pir||PS0180 transcription elongation factor S-II-related protein L122, hepatic
- mouse (fragment)
Length = 289
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 222 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 271
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 272 PMTTFVLCNECGNRWK 287
>gi|334325647|ref|XP_003340666.1| PREDICTED: transcription elongation factor A protein 1-like
[Monodelphis domestica]
Length = 301
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|322786324|gb|EFZ12874.1| hypothetical protein SINV_06958 [Solenopsis invicta]
Length = 113
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 48 AVTAEEIKRELGISLFEQPQGDK-GETQLSKVKRA------CEKCQNPEMYYSTRQTRSA 100
+TAEE+ + L EQ + + + QL+ V+ C KC+ Y+ QTRSA
Sbjct: 34 VMTAEEMASDEIKQLREQFKKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQVQTRSA 93
Query: 101 DEGQTTYYICPRCGHR 116
DE TT+ +C CG+R
Sbjct: 94 DEPMTTFVLCNECGNR 109
>gi|395829391|ref|XP_003787843.1| PREDICTED: transcription elongation factor A protein 2 [Otolemur
garnettii]
Length = 356
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 289 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCSKCRKKNCTYTQVQTRSSDE 338
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 339 PMTTFVVCNECGNRWK 354
>gi|323305599|gb|EGA59340.1| Rpc11p [Saccharomyces cerevisiae FostersB]
gi|323309844|gb|EGA63047.1| Rpc11p [Saccharomyces cerevisiae FostersO]
gi|323334176|gb|EGA75559.1| Rpc11p [Saccharomyces cerevisiae AWRI796]
gi|323338304|gb|EGA79533.1| Rpc11p [Saccharomyces cerevisiae Vin13]
gi|323349328|gb|EGA83553.1| Rpc11p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355738|gb|EGA87553.1| Rpc11p [Saccharomyces cerevisiae VL3]
gi|365766551|gb|EHN08047.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 100
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 26 VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRAC- 82
+ C SC ++ ++ ++ DR+ + +E+ LG G + + K C
Sbjct: 14 LACRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG----------GGWDNVDQTKTQCP 60
Query: 83 --EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+ C Y+ Q RSADE TT+Y C CGHR +E+
Sbjct: 61 NYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 100
>gi|126342555|ref|XP_001362914.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|345306840|ref|XP_001514566.2| PREDICTED: transcription elongation factor A protein 1-like
[Ornithorhynchus anatinus]
Length = 291
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 253 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 289
>gi|326469574|gb|EGD93583.1| DNA directed RNA polymerase II 15 kDa subunit [Trichophyton
tonsurans CBS 112818]
gi|326478900|gb|EGE02910.1| DNA directed RNA polymerase II 15 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 130
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
F FC+ C +L + + +S F VA+ SY V ++ ++G + Q
Sbjct: 23 FKFCRECSNLLYPKEDRAT-NSLVFACRTCHVAEPATSYCVFQNKLHSQVGDTA-GVTQD 80
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ L + + C C E + Q RSA+ G YY+C CG
Sbjct: 81 IGNDPTLPRSNKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTCG 126
>gi|327303384|ref|XP_003236384.1| DNA directed RNA polymerase II subunit [Trichophyton rubrum CBS
118892]
gi|326461726|gb|EGD87179.1| DNA directed RNA polymerase II 15 kDa subunit [Trichophyton rubrum
CBS 118892]
Length = 131
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
F FC+ C +L + + +S F VA+ SY V ++ ++G + Q
Sbjct: 24 FKFCRECSNLLYPKEDRAT-NSLVFACRTCHVAEPATSYCVFQNKLHSQVGDTA-GVTQD 81
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ L + + C C E + Q RSA+ G YY+C CG
Sbjct: 82 IGNDPTLPRSNKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTCG 127
>gi|345324936|ref|XP_003430868.1| PREDICTED: transcription elongation factor A protein 3-like
[Ornithorhynchus anatinus]
Length = 281
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
C KC+ Y+ QTRSADE TT+ +C CG+R
Sbjct: 243 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNR 277
>gi|224046246|ref|XP_002197689.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Taeniopygia guttata]
Length = 304
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 302
>gi|396081040|gb|AFN82659.1| DNA-directed RNA polymerase subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 104
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
LFC C +ML ++ N + C C + + +EI+ A K + L +
Sbjct: 1 MLFCPLCSSMLVVKRQPVGNELSCRMCGYLYAIS----KEITKATPMTPKKND---GLID 53
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+ D +SK + CE C + E+ + QTRSADE T +Y C RC
Sbjct: 54 E---DDNLKFVSKCGKRCE-CGSEEVSFVELQTRSADEPMTIFYKCIRC 98
>gi|126302941|ref|XP_001375502.1| PREDICTED: transcription elongation factor A protein 2-like
[Monodelphis domestica]
Length = 359
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 234 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 283
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 284 PMTTFVVCNECGNRWK 299
>gi|356927754|gb|AET42544.1| transcription factor S-II family protein [Emiliania huxleyi virus
202]
Length = 168
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
K C+KC + E+ + QTRSADEG T ++ C +C + +
Sbjct: 125 KAAITCKKCSSSEILMAMAQTRSADEGTTMFFTCVKCNQKWK 166
>gi|82596259|ref|XP_726187.1| transcription factor [Plasmodium yoelii yoelii 17XNL]
gi|23481491|gb|EAA17752.1| putative transcription factor [Plasmodium yoelii yoelii]
Length = 383
Score = 39.3 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+G+ G ++ K C C + +Y+ QTRSADEG T Y CP C
Sbjct: 331 EGENGAYNITYEK--CTDCDHDFLYFVNIQTRSADEGSTIIYYCPNC 375
>gi|330921683|ref|XP_003299524.1| hypothetical protein PTT_10532 [Pyrenophora teres f. teres 0-1]
gi|311326749|gb|EFQ92363.1| hypothetical protein PTT_10532 [Pyrenophora teres f. teres 0-1]
Length = 306
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 49 VTAEEIKRELGISLFEQPQGDK-GETQLSKVKRA------CEKCQNPEMYYSTRQTRSAD 101
+T +E+K + +L E+ + + E +++V++A C KC+ + YS QTRSAD
Sbjct: 228 MTHDEMKSDERRALDEKLKAENMNEAMVAQVEKAISKEFQCSKCKKKMVSYSQAQTRSAD 287
Query: 102 EGQTTYYICPRCGHRCQ 118
E TT+ C CG+R +
Sbjct: 288 EPMTTFCECMNCGNRWK 304
>gi|291387971|ref|XP_002710525.1| PREDICTED: transcription elongation factor A 1 [Oryctolagus
cuniculus]
Length = 329
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|71043668|ref|NP_001020906.1| transcription elongation factor A protein 1 [Rattus norvegicus]
gi|293353479|ref|XP_002728223.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Rattus norvegicus]
gi|392333220|ref|XP_003752832.1| PREDICTED: transcription elongation factor A protein 1-like [Rattus
norvegicus]
gi|73919859|sp|Q4KLL0.1|TCEA1_RAT RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|68533992|gb|AAH99141.1| Transcription elongation factor A (SII) 1 [Rattus norvegicus]
gi|149040017|gb|EDL94101.1| rCG63250 [Rattus norvegicus]
Length = 301
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|297282476|ref|XP_001102747.2| PREDICTED: transcription elongation factor A protein 3-like isoform
2, partial [Macaca mulatta]
gi|402853350|ref|XP_003891359.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Papio anubis]
Length = 105
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 33 FKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRA------CEKCQ 86
F + QD+ R S ++ +E EL Q E Q++K C KC+
Sbjct: 12 FSQLGQDLESRPPSSSLQSEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCK 71
Query: 87 NPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Y+ QTRSADE TT+ +C CG+R
Sbjct: 72 KKNCTYNQVQTRSADEPMTTFVLCNECGNR 101
>gi|61365803|gb|AAX42766.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|344272860|ref|XP_003408247.1| PREDICTED: transcription elongation factor A protein 1-like
[Loxodonta africana]
Length = 380
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
C KC+ Y+ QTRSADE TT+ +C CG+R + S
Sbjct: 277 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKMS 315
>gi|315050536|ref|XP_003174642.1| DNA-directed RNA polymerase subunit [Arthroderma gypseum CBS
118893]
gi|311339957|gb|EFQ99159.1| DNA-directed RNA polymerase subunit [Arthroderma gypseum CBS
118893]
Length = 131
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
Query: 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
F FC+ C +L + + +S F VA+ SY V ++ ++G + Q
Sbjct: 24 FKFCRECSNLLYPKEDRTT-NSLVFACRTCHVAEPATSYCVFQNKLHSQVGDTA-GVTQD 81
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114
+ L + + C C E + Q RSA+ G YY+C CG
Sbjct: 82 IGNDPTLPRSNKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTCG 127
>gi|149060978|gb|EDM11588.1| rCG30435 [Rattus norvegicus]
Length = 302
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 264 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 300
>gi|374725025|gb|EHR77105.1| DNA-directed RNA polymerase, subunit M [uncultured marine group II
euryarchaeote]
Length = 117
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 10 LFCKFCGTM-LRMESNHVVCSSCKFKKNV--------QDVADREISYAVTAEEIKRELGI 60
+FC CGT+ S + C++ K N D D ++S A ++ E K
Sbjct: 1 MFCPQCGTLAFPSPSGDISCTNYKCGYNGPANLVIKGTDGKDVDLSKAKSSTEAKSRKYE 60
Query: 61 SLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+ + DK + L+ C KC E++ QTRS+DE +T C CGH +E
Sbjct: 61 VIKDS---DKLQGVLTTGTYMCPKCDKMEVFSYLEQTRSSDEPETRMLTCKNCGHGWRE 116
>gi|74146960|dbj|BAE25455.1| unnamed protein product [Mus musculus]
Length = 301
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|6755728|ref|NP_035671.1| transcription elongation factor A protein 1 isoform 2 [Mus
musculus]
gi|28380825|sp|P10711.2|TCEA1_MOUSE RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|201939|gb|AAA40419.1| transcription factor S-II [Mus musculus]
gi|13543739|gb|AAH06022.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|38181911|gb|AAH61490.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|52789281|gb|AAH83127.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|74193672|dbj|BAE22787.1| unnamed protein product [Mus musculus]
Length = 301
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|451850085|gb|EMD63387.1| hypothetical protein COCSADRAFT_37167 [Cochliobolus sativus ND90Pr]
gi|451993215|gb|EMD85689.1| hypothetical protein COCHEDRAFT_1117563 [Cochliobolus
heterostrophus C5]
Length = 132
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTMLRMESNH------VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC C +L + C +C F + S V EI +G +
Sbjct: 20 FRFCSECSNLLFPREDKSENKLLFACRTCNFTEEAP-------SSCVMRHEIASTVGATA 72
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + T L +V++ C +C E + Q R+A+ G YY+C CGH
Sbjct: 73 GVTAEVAQDPT-LPRVQKQCTECGENEAVFFQSQQRTAETGMALYYVCAGCGH 124
>gi|114052218|ref|NP_001039390.1| transcription elongation factor A protein 1 [Bos taurus]
gi|122135281|sp|Q29RL9.1|TCEA1_BOVIN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|88954354|gb|AAI14118.1| Transcription elongation factor A (SII), 1 [Bos taurus]
Length = 301
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|60829875|gb|AAX36898.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|339443|gb|AAA61138.1| transcription elongation factor SII [Homo sapiens]
Length = 301
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|291391943|ref|XP_002712400.1| PREDICTED: transcription elongation factor A 1 isoform 1
[Oryctolagus cuniculus]
Length = 300
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 298
>gi|417398602|gb|JAA46334.1| Putative transcription elongation factor a protein 1 [Desmodus
rotundus]
Length = 301
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|344253671|gb|EGW09775.1| Transcription elongation factor A protein 1 [Cricetulus griseus]
Length = 278
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 239 TCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 276
>gi|114620133|ref|XP_528135.2| PREDICTED: transcription elongation factor A protein 1 isoform 5
[Pan troglodytes]
gi|397505489|ref|XP_003823293.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Pan paniscus]
gi|410212656|gb|JAA03547.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251522|gb|JAA13728.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298812|gb|JAA28006.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341539|gb|JAA39716.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 301
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|5803191|ref|NP_006747.1| transcription elongation factor A protein 1 isoform 1 [Homo
sapiens]
gi|386781537|ref|NP_001247637.1| transcription elongation factor A protein 1 [Macaca mulatta]
gi|332213781|ref|XP_003256009.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Nomascus leucogenys]
gi|426359603|ref|XP_004047057.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|1174652|sp|P23193.2|TCEA1_HUMAN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|37074|emb|CAA44470.1| transcription elongation factor [Homo sapiens]
gi|47940496|gb|AAH72460.1| Transcription elongation factor A (SII), 1 [Homo sapiens]
gi|49457436|emb|CAG47017.1| TCEA1 [Homo sapiens]
gi|54696852|gb|AAV38798.1| transcription elongation factor A (SII), 1 [Homo sapiens]
gi|61355862|gb|AAX41184.1| transcription elongation factor A 1 [synthetic construct]
gi|158261931|dbj|BAF83143.1| unnamed protein product [Homo sapiens]
gi|380815988|gb|AFE79868.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|383421129|gb|AFH33778.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|384942088|gb|AFI34649.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
Length = 301
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|114052232|ref|NP_001039825.1| transcription elongation factor A protein 3 [Bos taurus]
gi|122135940|sp|Q2KI09.1|TCEA3_BOVIN RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3
gi|86438556|gb|AAI12813.1| Transcription elongation factor A (SII), 3 [Bos taurus]
gi|296490011|tpg|DAA32124.1| TPA: transcription elongation factor A protein 3 [Bos taurus]
Length = 349
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 311 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 347
>gi|70606013|ref|YP_254883.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius DSM 639]
gi|68566661|gb|AAY79590.1| DNA-directed RNA polymerase subunit M [Sulfolobus acidocaldarius
DSM 639]
Length = 100
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
+C C N E Y+ QTRSADE T +Y C +CG +E
Sbjct: 60 SCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 98
>gi|355697956|gb|EHH28504.1| hypothetical protein EGK_18954, partial [Macaca mulatta]
gi|355779691|gb|EHH64167.1| hypothetical protein EGM_17319, partial [Macaca fascicularis]
Length = 300
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|440897844|gb|ELR49454.1| Transcription elongation factor A protein 3, partial [Bos grunniens
mutus]
Length = 328
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 290 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 326
>gi|148682306|gb|EDL14253.1| transcription elongation factor A (SII) 1 [Mus musculus]
Length = 302
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 264 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 300
>gi|400603045|gb|EJP70643.1| transcription elongation factor S-II [Beauveria bassiana ARSEF
2860]
Length = 309
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 20/103 (19%)
Query: 36 NVQDVADREISYAVTAEEIKRELGISL----FEQPQGDKGETQLSK--VKRA-------- 81
N+++ ++R + +V A EI E +++ + K E +L K +K+A
Sbjct: 205 NLKNKSNRALGQSVMASEIPPERFVAMTDDDLKSDDQRKKEIELEKENMKKAQVPMAEKS 264
Query: 82 ------CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ Y+ QTRSADE TT+ C CG+R +
Sbjct: 265 ISDSLECGKCKKKQVSYTQAQTRSADEPMTTFCECMNCGNRWK 307
>gi|320588310|gb|EFX00779.1| transcription elongation factor s 2 [Grosmannia clavigera kw1407]
Length = 332
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ Y+ QTRSADE TT+ C CGHR +
Sbjct: 294 CGKCKQRKVSYTQAQTRSADEPMTTFCECTVCGHRWK 330
>gi|126303929|ref|XP_001375747.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|322694712|gb|EFY86534.1| transcription elongation factor s-ii [Metarhizium acridum CQMa 102]
Length = 303
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C +C+ ++ Y+ QTRSADE TT+ C CGHR +
Sbjct: 262 CSRCKMKKVSYTQAQTRSADEPMTTFCECMNCGHRWK 298
>gi|189203175|ref|XP_001937923.1| transcription elongation factor S-II [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985022|gb|EDU50510.1| transcription elongation factor S-II [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 306
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 49 VTAEEIKRELGISLFEQPQGDK-GETQLSKVKRA------CEKCQNPEMYYSTRQTRSAD 101
+T +E+K + +L E+ + + E +++V++A C KC+ + YS QTRSAD
Sbjct: 228 MTHDEMKSDERRALDEKLKAENMNEAMVAQVEKAISKEFQCSKCKKKMVSYSQAQTRSAD 287
Query: 102 EGQTTYYICPRCGHRCQ 118
E TT+ C CG+R +
Sbjct: 288 EPMTTFCECMNCGNRWK 304
>gi|290973573|ref|XP_002669522.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
gi|284083071|gb|EFC36778.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
Length = 176
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C KCQ+ + Y QTRS+DE TT+ C CG+R ++
Sbjct: 139 CTKCQSTQCTYYQLQTRSSDEPMTTFITCLNCGNRWKQ 176
>gi|126342557|ref|XP_001363001.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>gi|126342513|ref|XP_001362316.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>gi|70922110|ref|XP_734273.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56506861|emb|CAH84994.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 183
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
C C + +Y+ QTRSADEG T Y CP C
Sbjct: 144 CTDCGHDFLYFVNIQTRSADEGSTIIYFCPNC 175
>gi|403300334|ref|XP_003940898.1| PREDICTED: transcription elongation factor A protein 1 [Saimiri
boliviensis boliviensis]
Length = 301
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|353234293|emb|CCA66319.1| related to transcription elongation factor TFIIS [Piriformospora
indica DSM 11827]
Length = 280
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
GE Q C KC+ + Y QTRSADE TT+ C CG+R +
Sbjct: 231 GEQQAETDAFQCGKCKQRKTIYRQAQTRSADEPMTTFVTCVNCGNRWK 278
>gi|345325225|ref|XP_001507346.2| PREDICTED: hypothetical protein LOC100075902 [Ornithorhynchus
anatinus]
Length = 604
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 298 KEIRKAMTKEAIR--------EHQMAKTGGTQTDLF--TCGKCKKKNCTYTQVQTRSSDE 347
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 348 PMTTFVVCNECGNRWK 363
>gi|343887420|ref|NP_001230609.1| transcription elongation factor A protein 1 [Sus scrofa]
Length = 300
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 298
>gi|327276421|ref|XP_003222968.1| PREDICTED: transcription elongation factor A protein 2-like [Anolis
carolinensis]
Length = 209
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 138 KEIWKAMTKEAIR--------EHQMAKTGGTQTDLF--TCRKCRKKNCTYTQVQTRSSDE 187
Query: 103 GQTTYYICPRCGHRCQE 119
TT+ +C CG+ ++
Sbjct: 188 PMTTFVVCNECGNHWKD 204
>gi|301788390|ref|XP_002929610.1| PREDICTED: transcription elongation factor A protein 1-like
[Ailuropoda melanoleuca]
Length = 301
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|291399294|ref|XP_002716071.1| PREDICTED: KIAA1710 protein-like [Oryctolagus cuniculus]
Length = 789
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T + C KC+ Y+ QTRSADE
Sbjct: 144 RELRNAMTQEAIR--------EHQMAKTGGTTTDLFQ--CSKCKKKNCTYNQVQTRSADE 193
Query: 103 GQTTYYICPRCGHRCQES 120
TT+ +C CG+R + S
Sbjct: 194 PMTTFVLCNECGNRWKRS 211
>gi|218884729|ref|YP_002429111.1| DNA-directed RNA polymerase subunit M, partial [Desulfurococcus
kamchatkensis 1221n]
gi|218766345|gb|ACL11744.1| DNA-directed RNA polymerase subunit M [Desulfurococcus
kamchatkensis 1221n]
Length = 75
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 71 GETQLSKVKRA-CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
GE L + C KC E YY QTR+ADE T ++ C +CG+ +E
Sbjct: 24 GEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKCTKCGYTWRE 73
>gi|395821365|ref|XP_003784013.1| PREDICTED: transcription elongation factor A protein 3 [Otolemur
garnettii]
Length = 326
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T + C KC+ Y+ QTRSADE
Sbjct: 259 RELRNAMTQEAIR--------EHQMAKTGGTTTDLFQ--CSKCKKKNCTYNQVQTRSADE 308
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 309 PMTTFVLCNECGNRWK 324
>gi|355723558|gb|AES07930.1| transcription elongation factor A , 1 [Mustela putorius furo]
Length = 314
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 277 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 313
>gi|398398099|ref|XP_003852507.1| hypothetical protein MYCGRDRAFT_59339, partial [Zymoseptoria
tritici IPO323]
gi|339472388|gb|EGP87483.1| hypothetical protein MYCGRDRAFT_59339 [Zymoseptoria tritici IPO323]
Length = 314
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 19 LRMESNHVVCSSCKFKKNV-QDVADREISYAVTAEEIK---RELGISLFEQPQGDKG--- 71
L+M SN + +KNV + E A+T+EE+K + +L E+ +K
Sbjct: 213 LKMRSNTL------LRKNVFSEEIPPEKFVAMTSEELKSAEKRAEDALIEKENMNKSMTP 266
Query: 72 -ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
E + C KC+ + YS QTRSADE TT+ C CG+R +
Sbjct: 267 KEAKAISTTMTCGKCKGSAVSYSQAQTRSADEPLTTFCECTLCGNRWK 314
>gi|395841852|ref|XP_003793744.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Otolemur garnettii]
Length = 301
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|395739672|ref|XP_003780672.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 1 [Pongo abelii]
Length = 301
Score = 38.9 bits (89), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>gi|431891774|gb|ELK02308.1| Transcription elongation factor A protein 1 [Pteropus alecto]
Length = 325
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 261 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 297
>gi|354488913|ref|XP_003506610.1| PREDICTED: transcription elongation factor A protein 1-like
[Cricetulus griseus]
Length = 318
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 280 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 316
>gi|296226473|ref|XP_002758943.1| PREDICTED: transcription elongation factor A protein 1 [Callithrix
jacchus]
Length = 323
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 285 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 321
>gi|374634249|ref|ZP_09706613.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
gi|373523014|gb|EHP67990.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
Length = 100
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
C C+N E+Y+ QTR+ADE T +Y C +CG +E
Sbjct: 60 VCPSCKNDEVYFWMVQTRAADEPPTRFYRCTKCGKTWRE 98
>gi|119607145|gb|EAW86739.1| transcription elongation factor A (SII), 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 249 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 285
>gi|229094709|ref|NP_001153222.1| transcription elongation factor A protein 1 isoform 3 [Mus
musculus]
Length = 300
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 298
>gi|449494108|ref|XP_004175278.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 229 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 265
>gi|351701808|gb|EHB04727.1| Transcription elongation factor A protein 1, partial
[Heterocephalus glaber]
Length = 285
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 248 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 284
>gi|195338531|ref|XP_002035878.1| GM14545 [Drosophila sechellia]
gi|194129758|gb|EDW51801.1| GM14545 [Drosophila sechellia]
Length = 311
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 273 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 309
>gi|194857365|ref|XP_001968937.1| GG24225 [Drosophila erecta]
gi|190660804|gb|EDV57996.1| GG24225 [Drosophila erecta]
Length = 313
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>gi|451847238|gb|EMD60546.1| hypothetical protein COCSADRAFT_163870 [Cochliobolus sativus
ND90Pr]
gi|451997829|gb|EMD90294.1| hypothetical protein COCHEDRAFT_1178878 [Cochliobolus
heterostrophus C5]
Length = 118
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 26/127 (20%)
Query: 9 FLFCKFCGTMLRMES--------------NHVVCSSCKFKKNVQDVADREISYAVTAEEI 54
LFC C MLR+ + N C +C + V + E Y + +E+
Sbjct: 2 LLFCPTCSNMLRVSAVPPGDPTTEDFVGQNRFECLTCPYH-FVINKRYYERKY-MKKKEV 59
Query: 55 KRELGISLFEQPQGDKGETQLSKVKRAC--EKCQNPEMYYSTRQTRSADEGQTTYYICPR 112
+ LG G + K + C EKC+N E Y+ Q RSADE T +Y C +
Sbjct: 60 EDILG--------GKGAWDNVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKCTQ 111
Query: 113 CGHRCQE 119
C +E
Sbjct: 112 CAKEWRE 118
>gi|349602860|gb|AEP98866.1| Transcription elongation factor A protein 1-like protein, partial
[Equus caballus]
Length = 290
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 252 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 288
>gi|440909134|gb|ELR59079.1| Transcription elongation factor A protein 1, partial [Bos grunniens
mutus]
Length = 289
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 252 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 288
>gi|291391945|ref|XP_002712401.1| PREDICTED: transcription elongation factor A 1 isoform 2
[Oryctolagus cuniculus]
Length = 279
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 241 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 277
>gi|195475592|ref|XP_002090068.1| GE19417 [Drosophila yakuba]
gi|194176169|gb|EDW89780.1| GE19417 [Drosophila yakuba]
Length = 313
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>gi|171688636|ref|XP_001909258.1| hypothetical protein [Podospora anserina S mat+]
gi|170944280|emb|CAP70390.1| unnamed protein product [Podospora anserina S mat+]
Length = 204
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 9 FLFCKFCGTMLRME----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKREL--GISL 62
+FC CG +L N ++C C + +D A + ++ + L +S+
Sbjct: 7 LVFCTDCGDLLPASQGSVKNILICKCCGAEH--RDHAWKAVTTKTKPSDFPSALRQKLSI 64
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117
+ + + +T+ C KC + YS Q RSADEG T Y C CG +C
Sbjct: 65 VQTVKRHEVQTERVDPNMDCHKCGRRGIRYSEVQQRSADEGSTIIYNC-ECGEKC 118
>gi|440467322|gb|ELQ36551.1| transcription elongation factor S-II [Magnaporthe oryzae Y34]
Length = 306
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 6 GRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
RD F G + S VV +S + K N + E+ A+E ++ + + E+
Sbjct: 206 NRDLAKGVFSGNI--AASKFVVMTSDELKSNDLRKQEEEL-----AKENMKKAQVPMAER 258
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
D E C KC+ ++ Y+ QTRSADE TT+ C CG+R +
Sbjct: 259 SISDALE---------CSKCKQKKVSYTQAQTRSADEPMTTFCECTVCGNRWK 302
>gi|358393887|gb|EHK43288.1| hypothetical protein TRIATDRAFT_35173 [Trichoderma atroviride IMI
206040]
Length = 122
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
+FC CG +L E N + C C + +D + I + L L
Sbjct: 7 MVFCTDCGNLLPATKGTEQNVLSCECCSAEN--KDTGAKVIVTKSKPSDFPSFLRQKLQS 64
Query: 65 QPQGDKGET--QLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
Q + T S V+ C C E+ Y+T Q RSADEG T Y C CG+ E+
Sbjct: 65 SVQAVERHTLNTESSVRERCPNCGREEVKYTTVQLRSADEGSTVIYNC-ECGYSWHEN 121
>gi|17136888|ref|NP_476967.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|442627872|ref|NP_001260457.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
gi|135660|sp|P20232.1|TFS2_DROME RecName: Full=Transcription elongation factor S-II; AltName:
Full=RNA polymerase II elongation factor DMS-II;
AltName: Full=TFIIS
gi|7921|emb|CAA37710.1| unnamed protein product [Drosophila melanogaster]
gi|6713129|gb|AAA92864.2| transcription elongation factor [Drosophila melanogaster]
gi|7298202|gb|AAF53436.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|15291997|gb|AAK93267.1| LD34766p [Drosophila melanogaster]
gi|220942248|gb|ACL83667.1| TfIIS-PA [synthetic construct]
gi|440213800|gb|AGB92992.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
Length = 313
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>gi|126303931|ref|XP_001375763.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>gi|45439355|ref|NP_958845.1| transcription elongation factor A protein 1 isoform 2 [Homo
sapiens]
gi|332213783|ref|XP_003256010.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Nomascus leucogenys]
gi|426359605|ref|XP_004047058.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|37072|emb|CAA40484.1| transcription elongation factor [Homo sapiens]
Length = 280
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>gi|114620135|ref|XP_001151569.1| PREDICTED: transcription elongation factor A protein 1 isoform 3
[Pan troglodytes]
gi|397505491|ref|XP_003823294.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Pan paniscus]
gi|410212654|gb|JAA03546.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251520|gb|JAA13727.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298810|gb|JAA28005.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341537|gb|JAA39715.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 280
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 278
>gi|50551345|ref|XP_503146.1| YALI0D22308p [Yarrowia lipolytica]
gi|49649014|emb|CAG81344.1| YALI0D22308p [Yarrowia lipolytica CLIB122]
Length = 110
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 19/118 (16%)
Query: 11 FCKFCGTMLRMESN----HVVCSSCKFKKNVQD---VADREISYAVTAEEIKRELGI-SL 62
FC C ML + ++ C +C ++ +QD V DR++ + +++ LG +
Sbjct: 4 FCPTCTNMLTLSTSGNGMRFECRTCPYEYYLQDGTIVYDRKV---LEKKKVDSVLGGENA 60
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
+E D G C KC N Y+ Q RSADE T + C C H+ +E+
Sbjct: 61 WENVDKDPGS--------QCPKCSNMGAYFYMLQIRSADEPMTKFCRCTACFHQWREN 110
>gi|357289731|gb|AET73044.1| transcription elongation factor A [Phaeocystis globosa virus 12T]
gi|357292531|gb|AET73867.1| transcription elongation factor A 1 [Phaeocystis globosa virus 14T]
Length = 173
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 32 KFKKNVQDVADREISYAVTAEEIKREL-GISLFEQPQGDKGETQLSKVKR---------- 80
K K + ++ D E+ +T++ IK L E+ + D E +L +K+
Sbjct: 68 KLKMIINNITDPELLDKITSKTIKAHLIAFMTHEELRPDLWE-ELIAIKKMKDENKFSPK 126
Query: 81 --------ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ + Y QTRSADE TT+ C CG+R +
Sbjct: 127 IEASTDEFTCFKCKENKCTYYQLQTRSADESMTTFVTCIPCGNRWK 172
>gi|389637312|ref|XP_003716294.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
gi|351642113|gb|EHA49975.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
Length = 304
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 16/113 (14%)
Query: 6 GRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
RD F G + S VV +S + K N + E+ A+E ++ + + E+
Sbjct: 206 NRDLAKGVFSGNI--AASKFVVMTSDELKSNDLRKQEEEL-----AKENMKKAQVPMAER 258
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
D E C KC+ ++ Y+ QTRSADE TT+ C CG+R +
Sbjct: 259 SISDALE---------CSKCKQKKVSYTQAQTRSADEPMTTFCECTVCGNRWK 302
>gi|229094714|ref|NP_001153223.1| transcription elongation factor A protein 1 isoform 1 [Mus
musculus]
Length = 312
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 274 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 310
>gi|432094693|gb|ELK26173.1| Transcription elongation factor A protein 1 [Myotis davidii]
Length = 376
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 325 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 361
>gi|426236089|ref|XP_004012007.1| PREDICTED: transcription elongation factor A protein 1 [Ovis aries]
Length = 313
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 275 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 311
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,757,457,720
Number of Sequences: 23463169
Number of extensions: 58262636
Number of successful extensions: 179390
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1469
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 177323
Number of HSP's gapped (non-prelim): 1753
length of query: 120
length of database: 8,064,228,071
effective HSP length: 87
effective length of query: 33
effective length of database: 6,022,932,368
effective search space: 198756768144
effective search space used: 198756768144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)