BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040426
(120 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGVQDAVACTRCGFSINVRDFEGKVVKTSVVFNKLGTAMPLSMEEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----EFQGPVVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 115
>sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C+ C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCTRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus
GN=Znrd1 PE=2 SV=1
Length = 123
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V+CS C F +V+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGIQDTVICSRCGFSIDVRDCEGKVVKTSVVFNKLGATIPLSVDEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q + R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ELQGPVIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCINC 115
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus
GN=Znrd1 PE=3 SV=1
Length = 123
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V+C C F +V+D + + +V ++ + +S+ E
Sbjct: 13 DLDFCPDCGSVLPLPGVQDTVICPRCGFSIDVRDFGGKVVKTSVVFNKLGTVIPMSVDEG 72
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E+Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 73 P-----ESQGPVVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTCINC 115
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens
GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 7/108 (6%)
Query: 8 DFLFCKFCGTMLRMES--NHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
D FC CG++L + + V C C F NV+D + + +V ++ + +S+ E
Sbjct: 16 DLDFCSDCGSVLPLPGAQDTVTCIRCGFNINVRDFEGKVVKTSVVFHQLGTAMPMSVEEG 75
Query: 66 PQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
P E Q V R C +C + M Y TRQ RSADEGQT +Y C C
Sbjct: 76 P-----ECQGPVVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNC 118
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 11 FCKFCGTMLRMESNH--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQG 68
FC CG ++ + VC SC +++ + DRE + + K + GI + EQ
Sbjct: 3 FCPKCGNLMLPDRKRKVWVCRSCGYEEPFDEEKDREKTVIKQEVKHKPDEGIVVIEQ--- 59
Query: 69 DKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
L K C KC N Y+ QTR+ DE T +Y C +CGH
Sbjct: 60 --DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGH 104
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + NV + V +R+ +E+ ELG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNVTRKVTNRKYP---KLKEVDDELG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTR ADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108
>sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1
Length = 119
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 8 DFLFCKFCGTMLR-MESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
+FC CG +L + C C+ + A+ + +A L +
Sbjct: 6 SLIFCSECGNLLESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLK-HSIV 64
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
Q + + + + ++ C KC N M + T Q RSADEG T +Y CPRC ++
Sbjct: 65 QVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYK 114
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFACNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 18/118 (15%)
Query: 9 FLFCKFCGTMLRMES----NHVVCSSCKFKKNV-QDVADREISYAVTAEEIKRELGISLF 63
LFC CG L +E + C++C + N+ + V +R+ +E+ LG
Sbjct: 2 LLFCPGCGNGLIVEEGQRCHRFSCNTCPYVHNITRKVTNRKYP---KLKEVDDVLG---- 54
Query: 64 EQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
G + +C KC++P Y+ QTRSADE TT+Y C +CGHR ++
Sbjct: 55 ----GAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 20/121 (16%)
Query: 9 FLFCKFCGTMLR----MESNHVVCSSCKF---------KKNVQDVADREISYAVTAEEIK 55
+FC CG +L + ++V CS CK K V AD ++ A++
Sbjct: 7 LIFCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSV 66
Query: 56 RELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
+ + E G + +K C +C N EM Y T Q RSADEG T +Y C CG+
Sbjct: 67 VKTSLKKNELKDG-------ATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGY 119
Query: 116 R 116
+
Sbjct: 120 K 120
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C ++ + + C+ C +++ +E Y E K ++ + E
Sbjct: 4 FCPKCNNLMLPKDGKLKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIESE------ 57
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
G L + C KC + E Y+ +QTR ADE +T +Y C +CGH +E
Sbjct: 58 GLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoM PE=3 SV=1
Length = 103
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDK 70
FC C +++ + + +VC C ++K D + I E++ G +L
Sbjct: 3 FCPKCKSLMIYQGDKLVCRKCGYEKEADDSEELVIKVERNKEDVPVIEGENL-------- 54
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
L K C C + E ++ RQ R+ADE + ++ C +CG +E
Sbjct: 55 --KTLPTTKAICPACGHNEAFWWLRQLRAADESEVRFFRCTKCGKTWRE 101
>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoM PE=3 SV=2
Length = 104
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 11 FCKFCGTMLRMESNHVVCSSCKFKKNVQD-VADREISYAVTAEEIKRELGISLFEQPQGD 69
FC CG ++ C C ++K++ D + D+ Y V+ E +E I GD
Sbjct: 3 FCPKCGAVMFPSEGKFKCQ-CGYEKDITDKLKDK---YRVSEEVEAKETIIFT-----GD 53
Query: 70 KGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
T L + C KC N E ++ +QTR ADE +T ++ C RC H +E
Sbjct: 54 DVNT-LPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 11 FCKFCGTMLRMESNH-----VVCSSCKFKKNVQ--DVADREISYAVTAEEIKRELGISLF 63
FC C ML + S + C SC ++ ++ ++ DR+ + +E+ LG
Sbjct: 4 FCPSCNNMLLITSGDSGVYTLACRSCPYEFPIEGIEIYDRK---KLPRKEVDDVLG---- 56
Query: 64 EQPQGDKGETQLSKVKRAC---EKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G + + K C + C Y+ Q RSADE TT+Y C CGHR +E+
Sbjct: 57 ------GGWDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKEN 110
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 10/113 (8%)
Query: 11 FCKFCGTML--RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQP 66
FC CG+M+ R E+ V CS C + + +E + +E + L +
Sbjct: 3 FCPKCGSMMMPRKENGKTVYKCSKCGY---IDTENQKEAKITTVIKHSAKEKTLVL--ES 57
Query: 67 QGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119
K QL++ +C C N E Y+ QTRSADE T +Y C +CG +E
Sbjct: 58 DMPKTGVQLTR-GISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 49 VTAEEIKRELGISLFEQPQ-GDKGETQLSKVK-RACEKCQNPEMYYSTRQTRSADEGQTT 106
+ EE+ ++ I + + Q ++ Q++ V+ + C C+N ++ QTRSADE TT
Sbjct: 99 LNPEELNKDNWIKIIARKQMTEETLNQMATVEWKPCYACKNTSYHFYQLQTRSADEPMTT 158
Query: 107 YYICPRC 113
+YIC C
Sbjct: 159 FYICKNC 165
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 282 PMTTYVVCNECGNRWK 297
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCNKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TTY +C CG+R +
Sbjct: 282 PMTTYVVCNECGNRWK 297
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
RE+ A+T E I+ E G T ++ C KC+ Y+ QTRSADE
Sbjct: 280 RELRNAMTQEAIR--------EHQMAKTGGTTTDLLR--CSKCKKKNCTYNQVQTRSADE 329
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 330 PMTTFVLCNECGNRWK 345
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 299
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 311 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 347
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRWK 311
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ Y+ QTRSADE TT+ +C CG+R +
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWK 346
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 233 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCGKCRKKNCTYTQVQTRSSDE 282
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 283 PMTTFVVCNECGNRWK 298
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 43 REISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADE 102
+EI A+T E I+ E G TQ C KC+ Y+ QTRS+DE
Sbjct: 232 KEIRKAMTKEAIR--------EHQMARTGGTQTDLF--TCGKCRKKNCTYTQVQTRSSDE 281
Query: 103 GQTTYYICPRCGHRCQ 118
TT+ +C CG+R +
Sbjct: 282 PMTTFVVCNECGNRWK 297
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ Y QTRSADE TT+ C CG+R +
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRWK 291
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC+ ++ Y QTRSADE TT+ C CG+R +
Sbjct: 271 CGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
C KC Y+ QTRS+DE TT+ C CG+R +
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRWK 306
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 11 FCKFCGTMLRME-----SNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQ 65
FC CG L + N C +C + + +A +E+ LG
Sbjct: 3 FCPTCGNHLIVAVDEEGRNAFDCRTCPYHFPISTFLYSRHEFA--QKEVDDVLG------ 54
Query: 66 PQGDKGETQLSKVKRACE--KCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120
G++ + + CE KC N Y+ Q RSADE +T+Y C +C + +E+
Sbjct: 55 --GEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWREN 109
>sp|B4U8Q5|ACCD_HYDS0 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=accD PE=3
SV=1
Length = 274
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 82 CEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118
CE+C+N + A E +T +Y+CP+CGH Q
Sbjct: 20 CEECKNILL---------AQELETNFYVCPKCGHHHQ 47
>sp|P36958|RPB9_DROME DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila
melanogaster GN=RpII15 PE=2 SV=2
Length = 129
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 15/117 (12%)
Query: 11 FCKFCGTMLRMESNH------VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFE 64
FC+ C ML + + C +C +K+ S + +I E+
Sbjct: 20 FCQECNNMLYPKEDKENKILLYACRNCDYKQEAD-------SNCIYVNKIMHEIDELTHI 72
Query: 65 QPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICP--RCGHRCQE 119
P T AC KC + E + QTR A+E YY+C C HR E
Sbjct: 73 VPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>sp|P0C8F8|TFS2_ASFWA Transcription factor S-II-related protein OS=African swine fever
virus (isolate Warthog/Namibia/Wart80/1980) GN=War-150
PE=2 SV=1
Length = 243
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 15 CGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEI--------------KRELG 59
CGT+ NH++ C ++ D ++ IS + E I K +
Sbjct: 133 CGTI-----NHIINCEKKSHQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTE 187
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I+L Q + + +QL K C C+ Y QTR+ DE T + C +CGH
Sbjct: 188 ITLRSQQKVAEKTSQLYK----CPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGH 239
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 24/116 (20%)
Query: 15 CGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEI--------------KRELG 59
CGT+ NH++ C ++ D ++ IS + E++ K +
Sbjct: 133 CGTI-----NHIINCEKKSHQQQDNDALNKLISGELKPEQLVGMTFAELCPSAALKEKTE 187
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I+L Q + + +QL K C C+ Y QTR+ DE T + C +CGH
Sbjct: 188 ITLRSQQKVAEKTSQLYK----CPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGH 239
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 15 CGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEI--------------KRELG 59
CGT+ NH++ C ++ D ++ IS + E I K +
Sbjct: 133 CGTI-----NHIINCEKKSHQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTE 187
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I+L Q + + +QL K C C+ Y QTR+ DE T + C +CGH
Sbjct: 188 ITLRSQQKVAEKTSQLYK----CPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGH 239
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 24/116 (20%)
Query: 15 CGTMLRMESNHVV-CSSCKFKKNVQDVADREISYAVTAEEI--------------KRELG 59
CGT+ NH++ C ++ D ++ IS + E I K +
Sbjct: 133 CGTI-----NHIINCEKKSHQQQDNDALNKLISGELKPEAIGSMTFAELCPSAALKEKTE 187
Query: 60 ISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
I+L Q + + +QL K C C+ Y QTR+ DE T + C +CGH
Sbjct: 188 ITLRSQQKVAEKTSQLYK----CPNCKQRMCTYREVQTRALDEPSTIFCTCKKCGH 239
>sp|P0C8F5|TFS2_ASFK5 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Pig/Kenya/KEN-50/1950) GN=Ken-151 PE=2
SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 54 IKRELGISLFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRC 113
+K + I+L Q + + +QL K C C+ Y QTR+ DE T Y C +C
Sbjct: 182 LKEKTEITLRSQQKVAEKTSQLYK----CPNCKQRMCTYREVQTRALDEPSTIYCTCKKC 237
Query: 114 GH 115
GH
Sbjct: 238 GH 239
>sp|P27999|RPB9_YEAST DNA-directed RNA polymerase II subunit RPB9 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB9 PE=1
SV=1
Length = 122
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTML----RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC+ C ML E+N ++ C +C + V++ + I G+
Sbjct: 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY---VEEAGSPLVYRHELITNIGETAGVV- 59
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
Q + L + R C KC + E + Q R D +++C C H
Sbjct: 60 ----QDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 108
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116
G+ + VK C C + ++ RQTRSADE T + +C CG R
Sbjct: 46 GKVEEGTVK--CPGCGSRRVHALQRQTRSADEPMTLFAMCSECGKR 89
>sp|O67566|RS8_AQUAE 30S ribosomal protein S8 OS=Aquifex aeolicus (strain VF5) GN=rpsH
PE=1 SV=1
Length = 168
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 2 ADPLGRDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGIS 61
DP+ +F ++R + + + S K K+ + DV +K+E I
Sbjct: 4 VDPIAD--MFSAIKNAIMRRD-DFLYVPSSKLKERILDV-------------LKKEGFIQ 47
Query: 62 LFEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEG 103
+E +G+K E + K+K EK NP+M +Q ++G
Sbjct: 48 DWEALKGEKYEEEYKKMKELAEKSPNPKMKRYLKQLEEYNKG 89
>sp|P60899|RPB9_PIG DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I
PE=3 SV=1
Length = 125
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC+ C ML + N ++ +C+ + Q AD Y EL + + Q
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACR-NCDYQQEADNSCIYVNKITHEVDELTQIIADVSQ 74
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
T C+KC + E + + A++ YY+C P CGHR E
Sbjct: 75 D---PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P60898|RPB9_MOUSE DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus
GN=Polr2i PE=2 SV=1
Length = 125
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC+ C ML + N ++ +C+ + Q AD Y EL + + Q
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACR-NCDYQQEADNSCIYVNKITHEVDELTQIIADVSQ 74
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
T C+KC + E + + A++ YY+C P CGHR E
Sbjct: 75 D---PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P36954|RPB9_HUMAN DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens
GN=POLR2I PE=1 SV=1
Length = 125
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC+ C ML + N ++ +C+ + Q AD Y EL + + Q
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACR-NCDYQQEADNSCIYVNKITHEVDELTQIIADVSQ 74
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
T C+KC + E + + A++ YY+C P CGHR E
Sbjct: 75 D---PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|Q6FS48|RPB9_CANGA DNA-directed RNA polymerase II subunit RPB9 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RPB9 PE=3 SV=1
Length = 122
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 14/113 (12%)
Query: 9 FLFCKFCGTML----RMESNHVV--CSSCKFKKNVQDVADREISYAVTAEEIKRELGISL 62
F FC+ C ML E+N ++ C +C + +++ + I G+
Sbjct: 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY---IEEAGSPLVYRHELITNIGETAGVV- 59
Query: 63 FEQPQGDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115
Q + L + R C KC + E + Q R D +++C C H
Sbjct: 60 ----QDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLACSH 108
>sp|Q32P73|RPB9_BOVIN DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I
PE=2 SV=1
Length = 125
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 9/114 (7%)
Query: 11 FCKFCGTML---RMESNHVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQ 67
FC+ C ML + N ++ +C+ + Q AD Y EL + + Q
Sbjct: 16 FCQECNNMLYPKEDKENRILLYACR-NCDYQQEADNSCIYVNKITHEVDELTQIIADVSQ 74
Query: 68 GDKGETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYIC--PRCGHRCQE 119
T C+KC + E + + A++ YY+C P CGHR E
Sbjct: 75 D---PTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|Q8C008|DZAN1_MOUSE Double zinc ribbon and ankyrin repeat-containing protein 1 OS=Mus
musculus GN=Dzank1 PE=1 SV=2
Length = 778
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 11 FCKFCGTMLRMESNHVVCSSC 31
FC +CG ML + ++H VC C
Sbjct: 372 FCDWCGAMLGISASHSVCPKC 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,762,435
Number of Sequences: 539616
Number of extensions: 1465286
Number of successful extensions: 5345
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 5265
Number of HSP's gapped (non-prelim): 87
length of query: 120
length of database: 191,569,459
effective HSP length: 87
effective length of query: 33
effective length of database: 144,622,867
effective search space: 4772554611
effective search space used: 4772554611
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)