Query 040426
Match_columns 120
No_of_seqs 139 out of 790
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 13:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_I B12.6, DNA-directed RNA 100.0 2.9E-42 1E-46 233.9 8.6 106 7-120 2-113 (122)
2 3h0g_I DNA-directed RNA polyme 100.0 6.7E-42 2.3E-46 229.4 8.4 105 7-119 2-112 (113)
3 3qt1_I DNA-directed RNA polyme 100.0 5.3E-43 1.8E-47 240.4 2.7 107 6-120 21-133 (133)
4 1qyp_A RNA polymerase II; tran 99.9 8E-27 2.8E-31 138.7 5.9 50 71-120 7-56 (57)
5 1tfi_A Transcriptional elongat 99.9 1.4E-26 4.8E-31 134.1 5.2 43 77-119 7-49 (50)
6 3po3_S Transcription elongatio 99.8 1.9E-21 6.7E-26 139.0 2.8 47 72-118 127-176 (178)
7 1pqv_S STP-alpha, transcriptio 99.8 3E-19 1E-23 137.1 4.7 42 77-118 266-307 (309)
8 2k4x_A 30S ribosomal protein S 98.0 3E-06 1E-10 49.2 3.1 30 7-36 16-47 (55)
9 3j20_Y 30S ribosomal protein S 97.7 2.1E-05 7.1E-10 44.8 2.2 31 6-36 16-48 (50)
10 2fiy_A Protein FDHE homolog; F 97.4 0.00028 9.5E-09 53.9 6.5 71 8-118 181-264 (309)
11 1k81_A EIF-2-beta, probable tr 96.3 0.0049 1.7E-07 32.4 3.4 32 80-118 1-32 (36)
12 6rxn_A Rubredoxin; electron tr 95.5 0.0092 3.1E-07 33.1 2.4 15 79-93 30-44 (46)
13 2akl_A PHNA-like protein PA012 95.1 0.0086 2.9E-07 40.3 1.8 28 80-118 28-55 (138)
14 1gh9_A 8.3 kDa protein (gene M 95.1 0.0098 3.4E-07 35.9 1.8 29 10-40 5-35 (71)
15 1yk4_A Rubredoxin, RD; electro 94.4 0.052 1.8E-06 30.7 3.8 17 78-94 34-50 (52)
16 2jr6_A UPF0434 protein NMA0874 94.4 0.038 1.3E-06 33.0 3.2 36 4-39 3-40 (68)
17 3a43_A HYPD, hydrogenase nicke 94.3 0.032 1.1E-06 37.7 3.2 14 26-39 71-84 (139)
18 2js4_A UPF0434 protein BB2007; 94.3 0.037 1.3E-06 33.2 3.1 36 4-39 3-40 (70)
19 2v3b_B Rubredoxin 2, rubredoxi 94.2 0.053 1.8E-06 31.0 3.5 18 78-95 35-52 (55)
20 1pft_A TFIIB, PFTFIIBN; N-term 94.2 0.03 1E-06 31.1 2.4 29 9-37 5-36 (50)
21 4rxn_A Rubredoxin; electron tr 94.2 0.039 1.3E-06 31.5 2.9 17 78-94 35-51 (54)
22 2kn9_A Rubredoxin; metalloprot 94.1 0.079 2.7E-06 32.7 4.4 19 78-96 59-77 (81)
23 1dl6_A Transcription factor II 94.0 0.061 2.1E-06 31.0 3.4 33 4-36 6-41 (58)
24 1e8j_A Rubredoxin; iron-sulfur 93.8 0.049 1.7E-06 30.8 2.8 16 78-93 35-50 (52)
25 2pk7_A Uncharacterized protein 93.8 0.043 1.5E-06 32.8 2.6 35 5-39 4-40 (69)
26 2hf1_A Tetraacyldisaccharide-1 93.7 0.037 1.3E-06 33.0 2.3 35 5-39 4-40 (68)
27 2ct7_A Ring finger protein 31; 93.7 0.062 2.1E-06 33.1 3.3 29 8-36 24-54 (86)
28 1pft_A TFIIB, PFTFIIBN; N-term 93.5 0.083 2.8E-06 29.2 3.4 33 79-120 5-37 (50)
29 1dx8_A Rubredoxin; electron tr 93.5 0.074 2.5E-06 31.9 3.4 18 78-95 39-56 (70)
30 2jny_A Uncharacterized BCR; st 93.1 0.074 2.5E-06 31.6 2.9 36 4-39 5-42 (67)
31 2kdx_A HYPA, hydrogenase/ureas 93.1 0.067 2.3E-06 34.9 3.0 12 26-37 74-85 (119)
32 1s24_A Rubredoxin 2; electron 93.1 0.08 2.7E-06 33.1 3.1 18 78-95 67-84 (87)
33 2fnf_X Putative RAS effector N 92.8 0.091 3.1E-06 31.5 3.0 31 5-37 31-61 (72)
34 3cng_A Nudix hydrolase; struct 92.8 0.054 1.9E-06 37.4 2.3 28 8-35 2-35 (189)
35 3m7n_A Putative uncharacterize 92.6 0.071 2.4E-06 37.3 2.6 29 9-37 140-168 (179)
36 1lko_A Rubrerythrin all-iron(I 92.4 0.056 1.9E-06 38.2 2.0 14 81-94 173-186 (191)
37 1rfh_A RAS association (ralgds 92.1 0.1 3.6E-06 29.9 2.5 30 5-36 18-47 (59)
38 2kpi_A Uncharacterized protein 92.0 0.21 7E-06 28.6 3.7 36 4-39 5-42 (56)
39 1x0t_A Ribonuclease P protein 91.9 0.19 6.4E-06 33.0 3.9 35 3-37 59-106 (120)
40 2k3r_A Ribonuclease P protein 91.5 0.19 6.3E-06 33.2 3.6 35 3-37 54-101 (123)
41 1vk6_A NADH pyrophosphatase; 1 91.3 0.12 4.2E-06 38.2 2.8 30 7-36 105-136 (269)
42 3pwf_A Rubrerythrin; non heme 91.2 0.096 3.3E-06 36.4 2.1 14 81-94 155-168 (170)
43 1vq8_Z 50S ribosomal protein L 91.2 0.073 2.5E-06 33.0 1.3 31 9-39 27-59 (83)
44 4esj_A Type-2 restriction enzy 91.2 0.1 3.6E-06 38.4 2.3 32 9-40 34-71 (257)
45 3h0g_I DNA-directed RNA polyme 90.9 0.13 4.3E-06 33.5 2.2 33 80-118 5-37 (113)
46 3j21_g 50S ribosomal protein L 90.6 0.07 2.4E-06 30.1 0.7 25 8-34 13-37 (51)
47 1faq_A RAF-1; transferase, ser 90.5 0.17 5.8E-06 27.8 2.3 29 6-37 11-39 (52)
48 3qt1_I DNA-directed RNA polyme 90.4 0.082 2.8E-06 35.5 1.0 34 79-118 24-57 (133)
49 1twf_L ABC10-alpha, DNA-direct 90.2 0.17 5.8E-06 30.3 2.2 26 11-36 30-56 (70)
50 1yuz_A Nigerythrin; rubrythrin 90.2 0.12 4.2E-06 36.8 1.9 14 80-93 187-200 (202)
51 1dl6_A Transcription factor II 89.7 0.29 9.8E-06 28.1 2.9 30 81-119 13-42 (58)
52 1vq8_Z 50S ribosomal protein L 89.7 0.25 8.4E-06 30.5 2.7 31 78-118 26-56 (83)
53 1ptq_A Protein kinase C delta 89.7 0.35 1.2E-05 26.3 3.1 31 6-36 8-39 (50)
54 2con_A RUH-035 protein, NIN on 89.5 0.12 4E-06 31.8 1.1 14 5-18 26-39 (79)
55 3h0g_L DNA-directed RNA polyme 88.8 0.32 1.1E-05 28.5 2.6 30 10-39 22-52 (63)
56 2g2k_A EIF-5, eukaryotic trans 88.4 0.44 1.5E-05 33.2 3.6 32 80-117 97-129 (170)
57 2enz_A NPKC-theta, protein kin 87.5 0.61 2.1E-05 26.9 3.4 32 6-37 20-52 (65)
58 2akl_A PHNA-like protein PA012 87.1 0.43 1.5E-05 32.0 2.7 30 8-37 26-56 (138)
59 3uej_A NPKC-delta, protein kin 87.0 0.65 2.2E-05 26.8 3.2 31 6-36 17-48 (65)
60 2e9h_A EIF-5, eukaryotic trans 86.8 0.66 2.3E-05 31.9 3.7 33 80-117 104-136 (157)
61 3cc2_Z 50S ribosomal protein L 86.3 0.32 1.1E-05 31.9 1.7 30 9-39 60-92 (116)
62 1y8f_A UNC-13 homolog A, MUNC1 86.1 0.74 2.5E-05 26.7 3.2 31 6-36 21-52 (66)
63 2yuu_A NPKC-delta, protein kin 85.7 0.75 2.6E-05 27.9 3.2 32 6-37 25-57 (83)
64 3ga8_A HTH-type transcriptiona 84.4 1.4 4.8E-05 26.3 4.0 38 80-117 3-46 (78)
65 3iz5_m 60S ribosomal protein L 84.2 0.39 1.3E-05 30.2 1.4 30 9-39 36-68 (92)
66 2eli_A Protein kinase C alpha 84.1 0.89 3E-05 27.7 3.0 32 6-37 25-57 (85)
67 3j21_i 50S ribosomal protein L 83.7 0.46 1.6E-05 29.4 1.5 30 9-39 35-67 (83)
68 2enn_A NPKC-theta, protein kin 83.5 0.85 2.9E-05 27.3 2.7 32 6-37 31-63 (77)
69 2jne_A Hypothetical protein YF 83.2 0.9 3.1E-05 28.9 2.7 27 10-36 33-59 (101)
70 3k1f_M Transcription initiatio 83.1 0.72 2.5E-05 32.6 2.5 30 7-36 19-53 (197)
71 2qkd_A Zinc finger protein ZPR 82.5 1.4 4.8E-05 34.7 4.2 42 78-119 219-261 (404)
72 1nee_A EIF-2-beta, probable tr 82.2 0.36 1.2E-05 32.6 0.7 31 80-117 103-133 (138)
73 2row_A RHO-associated protein 81.5 1.2 4.2E-05 27.4 2.9 31 6-36 32-65 (84)
74 2d74_B Translation initiation 81.0 0.3 1E-05 33.3 -0.1 32 80-118 105-136 (148)
75 2fiy_A Protein FDHE homolog; F 80.6 1.6 5.4E-05 33.1 3.8 39 78-118 181-219 (309)
76 2jrp_A Putative cytoplasmic pr 80.6 1.5 5.1E-05 26.9 3.0 27 10-36 3-29 (81)
77 3jyw_9 60S ribosomal protein L 80.3 0.78 2.7E-05 27.6 1.6 28 9-37 26-56 (72)
78 2db6_A SH3 and cysteine rich d 79.7 0.54 1.9E-05 28.0 0.8 31 7-37 26-57 (74)
79 3o9x_A Uncharacterized HTH-typ 79.4 2.4 8.2E-05 27.2 4.0 39 80-118 3-47 (133)
80 1dxg_A Desulforedoxin; non-hem 79.0 0.65 2.2E-05 23.9 0.9 22 7-28 4-28 (36)
81 2xzm_6 RPS27E; ribosome, trans 78.9 1.2 4.2E-05 27.3 2.2 36 72-116 25-60 (81)
82 4b6d_A RAC GTPase-activating p 78.5 1.3 4.5E-05 25.5 2.2 31 7-37 17-47 (61)
83 2ayj_A 50S ribosomal protein L 78.4 1.1 3.8E-05 25.6 1.8 28 5-34 15-42 (56)
84 2k5r_A Uncharacterized protein 77.6 1.6 5.3E-05 27.7 2.5 36 4-39 3-67 (97)
85 1ffk_W Ribosomal protein L37AE 77.2 1 3.5E-05 27.1 1.5 30 8-38 26-58 (73)
86 3na7_A HP0958; flagellar bioge 77.0 0.91 3.1E-05 33.1 1.4 27 11-37 200-234 (256)
87 3izc_m 60S ribosomal protein R 76.8 1 3.5E-05 28.3 1.4 30 9-39 36-68 (92)
88 1kbe_A Kinase suppressor of RA 76.6 1.7 5.8E-05 23.9 2.2 26 9-37 14-39 (49)
89 1nui_A DNA primase/helicase; z 76.4 2 6.9E-05 30.9 3.2 31 77-116 12-42 (255)
90 2jmo_A Parkin; IBR, E3 ligase, 76.0 1.5 5E-05 26.5 2.0 28 8-35 24-60 (80)
91 4bbr_M Transcription initiatio 75.1 1.2 4.1E-05 34.0 1.7 28 9-36 21-53 (345)
92 3j20_W 30S ribosomal protein S 74.9 0.85 2.9E-05 26.7 0.7 35 73-116 9-43 (63)
93 1wii_A Hypothetical UPF0222 pr 74.8 5.1 0.00018 24.6 4.3 37 78-118 22-58 (85)
94 2zjr_Z 50S ribosomal protein L 74.7 1.1 3.7E-05 25.9 1.1 28 6-36 27-54 (60)
95 2a20_A Regulating synaptic mem 74.3 0.45 1.5E-05 27.6 -0.7 26 8-33 32-59 (62)
96 3v2d_5 50S ribosomal protein L 74.1 0.86 2.9E-05 26.3 0.5 26 7-35 28-53 (60)
97 1qxf_A GR2, 30S ribosomal prot 73.9 0.64 2.2E-05 27.5 -0.1 30 78-116 6-35 (66)
98 4a17_Y RPL37A, 60S ribosomal p 73.7 1 3.4E-05 28.9 0.8 30 9-39 36-68 (103)
99 4ayb_P DNA-directed RNA polyme 73.1 1.4 4.8E-05 24.3 1.2 28 9-36 3-34 (48)
100 2vrw_B P95VAV, VAV1, proto-onc 73.0 2.7 9.3E-05 32.1 3.3 30 7-36 355-385 (406)
101 4esj_A Type-2 restriction enzy 71.8 2.2 7.4E-05 31.5 2.3 34 78-117 33-66 (257)
102 1nui_A DNA primase/helicase; z 70.7 2.2 7.5E-05 30.7 2.2 27 9-36 14-44 (255)
103 2kvh_A Zinc finger and BTB dom 69.8 2.5 8.4E-05 18.5 1.6 11 108-118 4-14 (27)
104 3cw2_K Translation initiation 69.4 0.8 2.7E-05 30.9 -0.4 30 80-116 104-133 (139)
105 2yqq_A Zinc finger HIT domain- 69.0 5.6 0.00019 22.5 3.2 28 3-35 6-33 (56)
106 3u50_C Telomerase-associated p 68.9 2.4 8.2E-05 29.4 2.0 24 11-34 44-68 (172)
107 2xzm_9 RPS31E; ribosome, trans 68.4 2.7 9.2E-05 29.6 2.2 29 9-37 113-143 (189)
108 3u5c_b RP61, YS20, 40S ribosom 68.1 2.2 7.5E-05 26.2 1.4 35 73-116 28-62 (82)
109 1wd2_A Ariadne-1 protein homol 67.1 2.1 7.1E-05 24.5 1.1 32 4-35 1-36 (60)
110 3k7a_M Transcription initiatio 66.9 2.6 8.8E-05 32.0 1.9 29 8-36 20-53 (345)
111 2kvf_A Zinc finger and BTB dom 66.2 3 0.0001 18.2 1.4 11 108-118 4-14 (28)
112 2kvg_A Zinc finger and BTB dom 65.9 2.7 9.3E-05 18.5 1.3 11 108-118 4-14 (27)
113 2qkd_A Zinc finger protein ZPR 65.6 4.6 0.00016 31.7 3.2 42 77-119 10-53 (404)
114 1rik_A E6APC1 peptide; E6-bind 62.4 4.4 0.00015 17.7 1.7 11 108-118 3-13 (29)
115 2m0d_A Zinc finger and BTB dom 62.4 3.9 0.00013 17.8 1.5 11 108-118 4-14 (30)
116 2m0f_A Zinc finger and BTB dom 60.7 4.5 0.00015 17.5 1.5 11 108-118 3-13 (29)
117 2lvu_A Zinc finger and BTB dom 64.2 1.9 6.4E-05 18.7 0.0 11 108-118 3-13 (26)
118 2k1p_A Zinc finger RAN-binding 59.7 4.6 0.00016 20.2 1.5 23 11-35 8-30 (33)
119 1gnf_A Transcription factor GA 59.0 0.86 2.9E-05 24.9 -1.5 34 79-119 4-37 (46)
120 3cxl_A N-chimerin; SH2, RHO-GA 58.6 5.6 0.00019 31.3 2.5 31 6-36 217-248 (463)
121 2elm_A Zinc finger protein 406 57.6 5.2 0.00018 19.1 1.5 12 107-118 9-20 (37)
122 2elp_A Zinc finger protein 406 56.1 6.3 0.00021 18.5 1.7 11 108-118 10-20 (37)
123 3fac_A Putative uncharacterize 55.7 2.7 9.2E-05 26.8 0.2 15 8-22 66-80 (118)
124 1srk_A Zinc finger protein ZFP 55.7 5.7 0.00019 18.3 1.4 11 108-118 8-18 (35)
125 2elq_A Zinc finger protein 406 55.6 5.8 0.0002 18.5 1.5 11 108-118 10-20 (36)
126 1znf_A 31ST zinc finger from X 55.6 2.9 9.8E-05 18.1 0.2 11 108-118 2-12 (27)
127 2elv_A Zinc finger protein 406 55.4 5.7 0.0002 18.5 1.4 11 108-118 10-20 (36)
128 2elx_A Zinc finger protein 406 55.3 5.8 0.0002 18.2 1.4 11 108-118 8-18 (35)
129 1l1o_C Replication protein A 7 53.5 6.7 0.00023 27.0 2.0 26 11-36 45-73 (181)
130 2zkr_2 60S ribosomal protein L 53.5 7.9 0.00027 24.4 2.1 27 8-35 15-41 (97)
131 2xzf_A Formamidopyrimidine-DNA 53.1 16 0.00054 26.8 4.1 31 78-116 241-271 (271)
132 2els_A Zinc finger protein 406 51.9 7.2 0.00025 18.1 1.5 11 108-118 10-20 (36)
133 2elt_A Zinc finger protein 406 51.7 7.3 0.00025 18.0 1.5 11 108-118 10-20 (36)
134 1p91_A Ribosomal RNA large sub 51.4 7.5 0.00026 27.3 2.0 24 11-34 4-27 (269)
135 1ard_A Yeast transcription fac 51.0 3.6 0.00012 17.9 0.2 11 108-118 3-13 (29)
136 1x3z_A Peptide: N-glycanase; h 50.9 14 0.00048 28.3 3.5 38 79-116 119-164 (335)
137 4bbr_M Transcription initiatio 50.4 12 0.00041 28.4 3.1 31 79-118 21-53 (345)
138 2jox_A Churchill protein; zinc 50.2 18 0.00063 22.9 3.4 13 78-90 56-68 (106)
139 3iz6_X 40S ribosomal protein S 49.8 3 0.0001 25.8 -0.3 35 73-116 30-64 (86)
140 1fv5_A First zinc finger of U- 48.6 5.3 0.00018 20.1 0.6 11 108-118 9-19 (36)
141 2m0e_A Zinc finger and BTB dom 48.5 4.3 0.00015 17.5 0.3 11 108-118 3-13 (29)
142 1klr_A Zinc finger Y-chromosom 48.5 4.2 0.00014 17.7 0.2 11 108-118 3-13 (30)
143 1paa_A Yeast transcription fac 48.3 4.1 0.00014 18.0 0.1 11 108-118 3-13 (30)
144 3irb_A Uncharacterized protein 48.3 8.7 0.0003 25.6 1.8 25 9-35 47-71 (145)
145 3ky9_A Proto-oncogene VAV; cal 47.9 13 0.00044 30.0 3.1 30 7-36 527-557 (587)
146 3iuf_A Zinc finger protein UBI 47.2 9 0.00031 19.6 1.5 11 108-118 8-18 (48)
147 1njq_A Superman protein; zinc- 46.9 9.5 0.00033 18.2 1.5 11 108-118 7-17 (39)
148 3pfq_A PKC-B, PKC-beta, protei 46.9 10 0.00035 31.0 2.4 29 7-35 111-140 (674)
149 2epc_A Zinc finger protein 32; 46.8 9.3 0.00032 18.4 1.4 11 108-118 12-22 (42)
150 2nn6_I 3'-5' exoribonuclease C 46.6 8.9 0.0003 27.1 1.8 28 9-37 169-197 (209)
151 2lv2_A Insulinoma-associated p 46.2 8.7 0.0003 23.0 1.5 31 8-38 27-69 (85)
152 2czr_A TBP-interacting protein 46.2 12 0.00041 26.5 2.3 10 107-116 154-163 (226)
153 2k5c_A Uncharacterized protein 46.1 7.4 0.00025 24.0 1.1 34 7-40 6-66 (95)
154 2en2_A B-cell lymphoma 6 prote 46.0 9.9 0.00034 18.3 1.5 11 108-118 12-22 (42)
155 2lvt_A Zinc finger and BTB dom 51.5 4.4 0.00015 17.8 0.0 11 108-118 3-13 (29)
156 2epv_A Zinc finger protein 268 45.1 10 0.00035 18.7 1.4 11 108-118 13-23 (44)
157 1p7a_A BF3, BKLF, kruppel-like 44.6 5.2 0.00018 18.8 0.2 11 108-118 12-22 (37)
158 2emb_A Zinc finger protein 473 44.1 11 0.00037 18.4 1.5 11 108-118 13-23 (44)
159 2emi_A Zinc finger protein 484 44.1 11 0.00036 18.7 1.4 11 108-118 13-23 (46)
160 2lvr_A Zinc finger and BTB dom 50.1 4.8 0.00016 17.6 0.0 11 108-118 4-14 (30)
161 2f9y_B Acetyl-coenzyme A carbo 44.0 4.6 0.00016 30.3 -0.1 31 9-39 24-57 (304)
162 2yu5_A Zinc finger protein 473 44.0 12 0.00042 18.2 1.7 11 108-118 13-23 (44)
163 2i5o_A DNA polymerase ETA; zin 43.9 7.3 0.00025 20.4 0.7 14 26-39 10-23 (39)
164 2el5_A Zinc finger protein 268 43.8 11 0.00038 18.1 1.4 11 108-118 11-21 (42)
165 3u6p_A Formamidopyrimidine-DNA 43.6 27 0.00093 25.6 4.1 30 77-114 243-272 (273)
166 1k82_A Formamidopyrimidine-DNA 43.4 28 0.00094 25.4 4.1 29 78-114 239-267 (268)
167 2eof_A Zinc finger protein 268 43.2 12 0.00039 18.2 1.5 11 108-118 13-23 (44)
168 2ytp_A Zinc finger protein 484 43.0 11 0.00039 18.6 1.4 11 108-118 13-23 (46)
169 2emj_A Zinc finger protein 28 43.0 12 0.00039 18.6 1.5 11 108-118 13-23 (46)
170 2elo_A Zinc finger protein 406 42.8 7 0.00024 18.3 0.5 11 108-118 10-20 (37)
171 2eoy_A Zinc finger protein 473 42.8 13 0.00044 18.4 1.6 11 108-118 13-23 (46)
172 2elr_A Zinc finger protein 406 42.6 5.8 0.0002 18.4 0.2 11 108-118 10-20 (36)
173 2em4_A Zinc finger protein 28 42.4 12 0.0004 18.6 1.4 11 108-118 13-23 (46)
174 2eow_A Zinc finger protein 347 42.1 12 0.00041 18.4 1.4 11 108-118 13-23 (46)
175 2vut_I AREA, nitrogen regulato 41.9 2.6 9E-05 22.6 -1.3 31 81-118 3-33 (43)
176 2e72_A POGO transposable eleme 41.7 14 0.00046 20.4 1.6 14 4-17 7-20 (49)
177 2eoz_A Zinc finger protein 473 41.6 11 0.00038 18.7 1.3 11 108-118 13-23 (46)
178 2yrj_A Zinc finger protein 473 41.6 12 0.00042 18.4 1.4 11 108-118 13-23 (46)
179 2yto_A Zinc finger protein 484 41.4 12 0.00043 18.5 1.4 11 108-118 13-23 (46)
180 1k3x_A Endonuclease VIII; hydr 41.3 31 0.0011 25.0 4.1 30 77-114 232-261 (262)
181 2eps_A POZ-, at HOOK-, and zin 41.2 6 0.00021 20.7 0.1 11 26-36 13-23 (54)
182 2ab3_A ZNF29; zinc finger prot 41.2 13 0.00044 15.8 1.3 11 108-118 3-15 (29)
183 2yu8_A Zinc finger protein 347 41.2 14 0.00048 18.2 1.6 11 108-118 13-23 (46)
184 1vfy_A Phosphatidylinositol-3- 40.8 19 0.00067 20.8 2.4 27 10-36 12-38 (73)
185 2epw_A Zinc finger protein 268 40.7 14 0.00049 18.1 1.6 11 108-118 13-23 (46)
186 2emh_A Zinc finger protein 484 40.6 13 0.00046 18.3 1.5 11 108-118 13-23 (46)
187 2ept_A Zinc finger protein 32; 40.5 13 0.00046 17.7 1.4 11 108-118 11-21 (41)
188 2yts_A Zinc finger protein 484 40.5 13 0.00045 18.3 1.4 11 108-118 13-23 (46)
189 1x6m_A GFA, glutathione-depend 40.5 6.5 0.00022 27.4 0.2 14 9-22 98-111 (196)
190 2em7_A Zinc finger protein 224 40.3 13 0.00045 18.3 1.4 11 108-118 13-23 (46)
191 2eor_A Zinc finger protein 224 40.2 14 0.00046 18.2 1.5 11 108-118 13-23 (46)
192 2emy_A Zinc finger protein 268 40.2 13 0.00046 18.3 1.4 11 108-118 13-23 (46)
193 1vzi_A Desulfoferrodoxin; ferr 40.0 9 0.00031 25.0 0.9 26 7-34 5-33 (126)
194 2ytj_A Zinc finger protein 484 39.6 14 0.00047 18.2 1.4 11 108-118 13-23 (46)
195 2emx_A Zinc finger protein 268 39.6 14 0.00048 18.0 1.5 11 108-118 11-21 (44)
196 2ytf_A Zinc finger protein 268 39.4 14 0.00048 18.1 1.4 11 108-118 13-23 (46)
197 2en3_A ZFP-95, zinc finger pro 39.4 16 0.00053 18.0 1.6 11 108-118 13-23 (46)
198 3p8b_A DNA-directed RNA polyme 39.4 11 0.00037 23.0 1.1 31 8-42 22-52 (81)
199 2ep3_A Zinc finger protein 484 39.2 14 0.00048 18.2 1.4 11 108-118 13-23 (46)
200 2em9_A Zinc finger protein 224 39.2 14 0.00048 18.1 1.4 11 108-118 13-23 (46)
201 2eox_A Zinc finger protein 473 39.0 13 0.00044 18.1 1.3 11 108-118 13-23 (44)
202 2eq0_A Zinc finger protein 347 39.0 15 0.0005 18.1 1.5 11 108-118 13-23 (46)
203 2emp_A Zinc finger protein 347 38.8 14 0.00049 18.1 1.4 11 108-118 13-23 (46)
204 4gat_A Nitrogen regulatory pro 38.7 3.1 0.00011 24.4 -1.4 35 77-118 7-41 (66)
205 2emf_A Zinc finger protein 484 38.7 15 0.0005 18.2 1.4 11 108-118 13-23 (46)
206 2eme_A Zinc finger protein 473 38.6 15 0.0005 18.1 1.4 11 108-118 13-23 (46)
207 2em3_A Zinc finger protein 28 38.5 15 0.0005 18.1 1.4 11 108-118 13-23 (46)
208 2epu_A Zinc finger protein 32; 38.5 13 0.00045 18.2 1.3 11 108-118 13-23 (45)
209 1ee8_A MUTM (FPG) protein; bet 38.5 28 0.00094 25.4 3.4 30 78-115 234-263 (266)
210 2ema_A Zinc finger protein 347 38.4 15 0.00051 18.1 1.4 11 108-118 13-23 (46)
211 2em2_A Zinc finger protein 28 38.4 15 0.00051 18.1 1.4 11 108-118 13-23 (46)
212 2ene_A Zinc finger protein 347 38.3 15 0.00051 18.1 1.4 11 108-118 13-23 (46)
213 3f2b_A DNA-directed DNA polyme 38.3 24 0.00081 31.0 3.4 13 26-38 503-515 (1041)
214 1rim_A E6APC2 peptide; E6-bind 38.1 6.7 0.00023 18.2 -0.0 11 108-118 3-13 (33)
215 2gnr_A Conserved hypothetical 38.0 16 0.00054 24.4 1.8 24 9-34 47-70 (145)
216 2yw8_A RUN and FYVE domain-con 37.9 28 0.00097 20.6 2.9 28 9-36 19-46 (82)
217 2eoo_A ZFP-95, zinc finger pro 37.9 15 0.00052 18.1 1.4 11 108-118 13-23 (46)
218 1joc_A EEA1, early endosomal a 37.9 24 0.00084 22.7 2.7 29 9-37 69-97 (125)
219 2ytk_A Zinc finger protein 347 37.8 15 0.00052 18.0 1.4 11 108-118 13-23 (46)
220 2en8_A Zinc finger protein 224 37.7 16 0.00054 17.9 1.5 11 108-118 13-23 (46)
221 2lcq_A Putative toxin VAPC6; P 37.6 14 0.00049 24.7 1.6 14 105-118 130-143 (165)
222 2el4_A Zinc finger protein 268 37.6 16 0.00054 17.9 1.5 11 108-118 13-23 (46)
223 2em8_A Zinc finger protein 224 37.5 16 0.00053 18.1 1.4 11 108-118 13-23 (46)
224 2eml_A Zinc finger protein 28 37.4 16 0.00054 18.0 1.4 11 108-118 13-23 (46)
225 1l8d_A DNA double-strand break 37.3 8.7 0.0003 24.0 0.4 11 11-21 49-59 (112)
226 4gop_C Putative uncharacterize 37.2 17 0.00058 28.2 2.2 26 10-35 309-337 (444)
227 2agh_C Zinc finger protein HRX 37.1 11 0.00036 18.4 0.6 7 14-20 2-8 (31)
228 1zfo_A LAsp-1; LIM domain, zin 37.0 13 0.00043 18.0 0.9 10 79-88 3-12 (31)
229 2gmg_A Hypothetical protein PF 36.8 7.9 0.00027 24.8 0.2 10 108-117 68-77 (105)
230 2enc_A Zinc finger protein 224 36.7 16 0.00056 17.9 1.4 11 108-118 13-23 (46)
231 2ysp_A Zinc finger protein 224 36.5 15 0.00051 18.1 1.3 11 108-118 13-23 (46)
232 2ytg_A ZFP-95, zinc finger pro 36.5 17 0.00058 17.9 1.5 11 108-118 13-23 (46)
233 2cot_A Zinc finger protein 435 36.4 3.3 0.00011 23.4 -1.6 38 79-118 18-57 (77)
234 2el6_A Zinc finger protein 268 36.4 17 0.00058 17.9 1.5 11 108-118 13-23 (46)
235 3pfq_A PKC-B, PKC-beta, protei 36.4 7.5 0.00026 31.8 0.0 30 7-36 46-76 (674)
236 1yui_A GAGA-factor; complex (D 36.3 17 0.00057 18.8 1.5 11 108-118 25-35 (54)
237 2eoj_A Zinc finger protein 268 36.0 10 0.00035 18.5 0.5 11 108-118 13-23 (44)
238 2emm_A ZFP-95, zinc finger pro 35.8 17 0.00059 17.8 1.4 11 108-118 13-23 (46)
239 2yso_A ZFP-95, zinc finger pro 35.8 18 0.0006 17.8 1.5 11 108-118 13-23 (46)
240 2en1_A Zinc finger protein 224 35.6 16 0.00054 18.0 1.3 11 108-118 13-23 (46)
241 1wfk_A Zinc finger, FYVE domai 35.4 36 0.0012 20.5 3.1 28 8-35 8-35 (88)
242 2em5_A ZFP-95, zinc finger pro 35.4 18 0.0006 17.8 1.4 11 108-118 13-23 (46)
243 2ep2_A Zinc finger protein 484 35.1 18 0.00062 17.7 1.4 11 108-118 13-23 (46)
244 2e2z_A TIM15; protein import, 34.9 14 0.00047 23.4 1.1 36 78-116 12-47 (100)
245 1ltl_A DNA replication initiat 34.5 19 0.00064 26.3 1.9 33 77-116 132-165 (279)
246 2ytd_A Zinc finger protein 473 34.2 19 0.00065 17.7 1.4 11 108-118 13-23 (46)
247 2kwq_A Protein MCM10 homolog; 33.7 14 0.00049 22.9 1.0 12 26-37 16-27 (92)
248 2eos_A B-cell lymphoma 6 prote 33.5 9.6 0.00033 18.4 0.2 11 108-118 12-22 (42)
249 2ep0_A Zinc finger protein 28 33.3 20 0.00068 17.6 1.4 11 108-118 13-23 (46)
250 2ytb_A Zinc finger protein 32; 32.9 10 0.00035 18.2 0.2 11 108-118 12-22 (42)
251 2kfq_A FP1; protein, de novo p 32.6 4.8 0.00016 18.5 -1.1 10 108-117 3-12 (32)
252 2yte_A Zinc finger protein 473 32.4 10 0.00036 18.2 0.2 11 108-118 11-21 (42)
253 2hpu_A NOSL protein; alpha bet 32.3 4.3 0.00015 28.2 -1.8 40 78-117 17-58 (175)
254 2en6_A Zinc finger protein 268 32.3 19 0.00065 17.6 1.3 11 108-118 13-23 (46)
255 3qqc_A DNA-directed RNA polyme 32.0 17 0.00058 28.7 1.4 26 9-34 5-32 (436)
256 1z2q_A LM5-1; membrane protein 31.9 43 0.0015 19.8 3.0 29 8-36 20-48 (84)
257 1dvp_A HRS, hepatocyte growth 31.6 30 0.001 24.2 2.6 29 9-37 161-189 (220)
258 2eq3_A Zinc finger protein 347 30.9 12 0.00042 18.4 0.3 11 108-118 13-23 (46)
259 1x4u_A Zinc finger, FYVE domai 30.9 45 0.0016 19.7 3.0 29 9-37 14-42 (84)
260 2enh_A Zinc finger protein 28 30.5 13 0.00045 18.4 0.4 11 108-118 13-23 (46)
261 4gzn_C ZFP-57, zinc finger pro 30.5 24 0.00083 19.4 1.6 12 26-37 5-16 (60)
262 2enf_A Zinc finger protein 347 30.2 12 0.0004 18.5 0.1 11 108-118 13-23 (46)
263 2emg_A Zinc finger protein 484 30.0 12 0.00041 18.5 0.2 11 108-118 13-23 (46)
264 1vd4_A Transcription initiatio 30.0 23 0.00078 19.0 1.4 12 107-118 14-25 (62)
265 2drp_A Protein (tramtrack DNA- 29.9 24 0.00082 18.7 1.5 11 108-118 11-21 (66)
266 2k2d_A Ring finger and CHY zin 29.9 12 0.00042 22.5 0.2 26 9-34 37-64 (79)
267 2lk0_A RNA-binding protein 5; 29.8 12 0.0004 18.5 0.1 21 11-33 7-27 (32)
268 1y07_A Desulfoferrodoxin (RBO) 29.4 21 0.00071 23.3 1.3 24 9-34 7-34 (128)
269 3t7l_A Zinc finger FYVE domain 29.4 40 0.0014 20.3 2.6 28 9-36 20-47 (90)
270 2eon_A ZFP-95, zinc finger pro 29.2 13 0.00043 18.5 0.1 11 108-118 13-23 (46)
271 3dfx_A Trans-acting T-cell-spe 29.2 4.6 0.00016 23.4 -1.7 34 78-118 6-39 (63)
272 2riq_A Poly [ADP-ribose] polym 29.0 24 0.00081 24.1 1.5 28 8-35 77-111 (160)
273 2eq1_A Zinc finger protein 347 28.9 12 0.00041 18.5 0.0 11 108-118 13-23 (46)
274 2epr_A POZ-, at HOOK-, and zin 28.9 23 0.0008 17.6 1.3 11 108-118 13-23 (48)
275 1ryq_A DNA-directed RNA polyme 28.9 19 0.00064 21.2 0.9 30 7-40 9-38 (69)
276 2en7_A Zinc finger protein 268 28.8 11 0.00036 18.4 -0.2 11 108-118 13-23 (44)
277 3sgi_A DNA ligase; HET: DNA AM 28.7 12 0.00042 30.9 0.1 27 9-35 415-447 (615)
278 2em6_A Zinc finger protein 224 28.6 13 0.00045 18.4 0.1 11 108-118 13-23 (46)
279 4e2x_A TCAB9; kijanose, tetron 28.5 72 0.0025 23.9 4.4 41 79-119 12-65 (416)
280 2eou_A Zinc finger protein 473 28.4 12 0.00042 18.3 0.0 11 108-118 13-23 (44)
281 2dkt_A Ring finger and CHY zin 28.2 22 0.00077 23.8 1.3 37 77-114 69-105 (143)
282 2dmi_A Teashirt homolog 3; zin 28.2 11 0.00036 22.8 -0.3 12 26-37 20-31 (115)
283 2eov_A Zinc finger protein 484 28.0 14 0.00046 18.2 0.1 11 108-118 13-23 (46)
284 2yth_A Zinc finger protein 224 28.0 14 0.00046 18.3 0.2 11 108-118 13-23 (46)
285 2eop_A Zinc finger protein 268 27.7 14 0.00048 18.1 0.2 11 108-118 13-23 (46)
286 2epx_A Zinc finger protein 28 27.6 14 0.00048 18.2 0.2 11 108-118 13-23 (47)
287 2eoh_A Zinc finger protein 28 27.4 13 0.00044 18.4 -0.0 11 108-118 13-23 (46)
288 3bvo_A CO-chaperone protein HS 27.3 30 0.001 24.3 1.9 32 7-38 8-40 (207)
289 3lqh_A Histone-lysine N-methyl 27.3 37 0.0013 23.5 2.4 28 10-37 3-33 (183)
290 2ct0_A Non-SMC element 1 homol 27.2 51 0.0017 19.3 2.7 27 8-37 14-40 (74)
291 2epq_A POZ-, at HOOK-, and zin 27.2 16 0.00053 18.0 0.3 11 108-118 11-21 (45)
292 2ely_A Zinc finger protein 224 27.1 16 0.00056 18.0 0.4 11 108-118 13-23 (46)
293 1bbo_A Human enhancer-binding 27.1 29 0.001 17.7 1.5 11 26-36 2-12 (57)
294 3uk3_C Zinc finger protein 217 26.6 30 0.001 17.6 1.5 11 26-36 5-15 (57)
295 1a7i_A QCRP2 (LIM1); LIM domai 26.6 48 0.0016 18.9 2.5 32 6-37 4-46 (81)
296 2adr_A ADR1; transcription reg 26.5 30 0.001 17.9 1.5 11 26-36 3-13 (60)
297 3e0o_A Peptide methionine sulf 26.5 69 0.0024 21.5 3.5 19 75-93 86-104 (144)
298 2eoe_A Zinc finger protein 347 26.5 16 0.00056 17.9 0.3 11 108-118 13-23 (46)
299 1qf8_A Casein kinase II; casei 26.4 19 0.00067 25.1 0.8 16 9-24 134-149 (182)
300 3hcg_A Peptide methionine sulf 26.4 50 0.0017 22.2 2.8 19 75-93 88-106 (146)
301 1wff_A Riken cDNA 2810002D23 p 26.4 44 0.0015 20.4 2.3 28 9-38 25-52 (85)
302 2od1_A Protein CBFA2T1; zinc f 26.4 55 0.0019 18.0 2.6 31 1-36 5-35 (60)
303 3w0f_A Endonuclease 8-like 3; 26.3 29 0.001 25.8 1.8 30 80-115 252-281 (287)
304 2csh_A Zinc finger protein 297 26.1 5.7 0.0002 23.9 -1.9 38 79-118 37-76 (110)
305 2epz_A Zinc finger protein 28 26.1 16 0.00054 18.0 0.2 11 108-118 13-23 (46)
306 2emz_A ZFP-95, zinc finger pro 26.0 14 0.00048 18.2 -0.0 11 108-118 13-23 (46)
307 1f2i_G Fusion of N-terminal 17 25.9 31 0.001 18.7 1.5 11 108-118 50-60 (73)
308 2gai_A DNA topoisomerase I; zi 25.9 17 0.00058 30.0 0.4 30 81-116 574-606 (633)
309 2eom_A ZFP-95, zinc finger pro 25.9 14 0.00049 18.3 -0.0 11 108-118 13-23 (46)
310 2l6l_A DNAJ homolog subfamily 25.8 26 0.00088 23.1 1.3 33 79-118 112-144 (155)
311 2elz_A Zinc finger protein 224 25.7 16 0.00054 18.0 0.1 11 108-118 13-23 (46)
312 2yrm_A B-cell lymphoma 6 prote 25.7 16 0.00054 17.8 0.2 11 108-118 11-21 (43)
313 4dgl_A Casein kinase II subuni 25.6 22 0.00075 25.5 0.9 13 26-38 135-147 (215)
314 2ytn_A Zinc finger protein 347 25.6 16 0.00055 17.9 0.2 11 108-118 13-23 (46)
315 2co8_A NEDD9 interacting prote 25.5 38 0.0013 19.6 1.9 32 5-36 11-53 (82)
316 2f9i_B Acetyl-coenzyme A carbo 25.5 11 0.00037 28.0 -0.8 28 9-36 30-60 (285)
317 1wfh_A Zinc finger (AN1-like) 25.4 44 0.0015 19.3 2.1 27 9-38 15-41 (64)
318 4glx_A DNA ligase; inhibitor, 25.2 27 0.00092 28.6 1.5 26 9-34 405-435 (586)
319 2en9_A Zinc finger protein 28 25.1 17 0.00057 17.9 0.2 11 108-118 13-23 (46)
320 2ep1_A Zinc finger protein 484 25.0 13 0.00045 18.2 -0.2 11 108-118 13-23 (46)
321 2ytq_A Zinc finger protein 268 24.9 17 0.00057 17.9 0.1 11 108-118 13-23 (46)
322 2eod_A TNF receptor-associated 24.8 51 0.0017 17.5 2.3 12 107-118 36-48 (66)
323 2apo_B Ribosome biogenesis pro 24.8 26 0.00087 20.0 0.9 10 79-88 18-27 (60)
324 1zfd_A SWI5; DNA binding motif 24.7 20 0.00068 15.8 0.4 11 108-118 4-16 (32)
325 2emk_A Zinc finger protein 28 24.7 17 0.00058 17.9 0.1 11 108-118 13-23 (46)
326 2eq4_A Zinc finger protein 224 24.6 16 0.00056 17.9 0.1 11 108-118 13-23 (46)
327 3q87_A Putative uncharacterize 24.5 35 0.0012 22.4 1.7 14 26-39 100-113 (125)
328 2eoq_A Zinc finger protein 224 24.1 16 0.00055 17.9 -0.0 11 108-118 13-23 (46)
329 2yti_A Zinc finger protein 347 24.0 13 0.00045 18.3 -0.4 10 108-117 13-22 (46)
330 1sp2_A SP1F2; zinc finger, tra 24.0 18 0.00063 15.8 0.2 11 108-118 3-15 (31)
331 1x4s_A Protein FON, zinc finge 23.3 37 0.0013 19.3 1.4 26 79-117 11-36 (59)
332 2x5c_A Hypothetical protein OR 23.0 43 0.0015 21.1 1.8 27 77-103 50-84 (131)
333 3lpe_B DNA-directed RNA polyme 23.0 40 0.0014 19.1 1.5 26 10-40 2-27 (59)
334 2eq2_A Zinc finger protein 347 22.8 13 0.00046 18.3 -0.5 10 108-117 13-22 (46)
335 2em0_A Zinc finger protein 224 22.7 18 0.00061 17.8 -0.0 11 108-118 13-23 (46)
336 2ct1_A Transcriptional repress 22.7 38 0.0013 18.6 1.5 11 108-118 16-26 (77)
337 1vq8_1 50S ribosomal protein L 22.5 42 0.0014 19.0 1.5 24 9-33 17-40 (57)
338 1we9_A PHD finger family prote 22.4 66 0.0023 17.7 2.5 28 8-35 5-32 (64)
339 1va1_A Transcription factor SP 22.3 44 0.0015 15.4 1.5 11 108-118 9-21 (37)
340 2ytr_A Zinc finger protein 347 22.1 15 0.00052 18.0 -0.4 10 108-117 13-22 (46)
341 1g47_A Pinch protein; LIM doma 22.1 63 0.0021 18.0 2.4 32 6-37 8-51 (77)
342 1x6e_A Zinc finger protein 24; 22.1 40 0.0014 18.3 1.4 11 26-36 15-25 (72)
343 3ny3_A E3 ubiquitin-protein li 22.0 41 0.0014 19.9 1.5 21 14-34 6-26 (75)
344 1x5w_A Zinc finger protein 64, 22.0 40 0.0014 18.1 1.5 11 26-36 10-20 (70)
345 3zyq_A Hepatocyte growth facto 21.9 53 0.0018 23.1 2.4 28 10-37 165-192 (226)
346 2d9h_A Zinc finger protein 692 21.8 41 0.0014 18.5 1.5 12 26-37 8-19 (78)
347 2lo3_A SAGA-associated factor 21.8 48 0.0016 17.6 1.6 13 103-115 13-25 (44)
348 2dj7_A Actin-binding LIM prote 21.8 62 0.0021 18.6 2.3 30 6-35 12-52 (80)
349 1dgs_A DNA ligase; AMP complex 21.5 32 0.0011 28.7 1.3 25 9-34 403-430 (667)
350 2l1u_A MSRB2, methionine-R-sul 21.4 83 0.0028 21.0 3.1 19 75-93 89-107 (143)
351 2lce_A B-cell lymphoma 6 prote 21.4 42 0.0014 18.2 1.5 11 108-118 46-56 (74)
352 2yrc_A Protein transport prote 21.4 1.2E+02 0.004 16.9 3.4 36 4-39 4-47 (59)
353 1bhi_A CRE-BP1, ATF-2; CRE bin 21.3 47 0.0016 15.2 1.5 11 108-118 7-19 (38)
354 2ytm_A Zinc finger protein 28 21.1 16 0.00056 18.0 -0.4 11 108-118 13-23 (46)
355 1x62_A C-terminal LIM domain p 21.1 41 0.0014 19.2 1.4 31 5-35 11-51 (79)
356 3nis_A E3 ubiquitin-protein li 20.7 47 0.0016 20.0 1.6 20 14-33 10-29 (82)
357 1y02_A CARP2, FYVE-ring finger 20.6 50 0.0017 21.3 1.8 27 9-35 19-45 (120)
358 2epp_A POZ-, at HOOK-, and zin 20.4 23 0.00077 20.1 0.1 11 108-118 14-24 (66)
359 2l8e_A Polyhomeotic-like prote 20.4 26 0.00089 19.1 0.4 12 10-21 19-30 (49)
360 1n0z_A ZNF265; zinc finger, RN 20.1 54 0.0019 17.3 1.6 24 11-36 16-41 (45)
No 1
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=100.00 E-value=2.9e-42 Score=233.93 Aligned_cols=106 Identities=22% Similarity=0.502 Sum_probs=88.5
Q ss_pred CCcccCccCCCcccccCC----c--EEeCCCCCeeeccccccceEEEeeehhHHhhhhccccccccCCCccccccccccc
Q 040426 7 RDFLFCKFCGTMLRMESN----H--VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKR 80 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~----~--~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~ 80 (120)
++|.|||+|||||+|+++ . |.|++|||.++++. .++|++... +..+++.. |+.++..|+++|+++.
T Consensus 2 ~~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~~~----~~v~~~~~~---~~~~e~~~-v~~~~~~~~t~p~t~~ 73 (122)
T 1twf_I 2 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS----PLVYRHELI---TNIGETAG-VVQDIGSDPTLPRSDR 73 (122)
T ss_dssp CCCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEECSC----SEEEEEESS---CCTTSSTT-CCTTGGGCTTSCCCCC
T ss_pred CCCCcccccCccCcccccCcCCCCEEECCcCCCeeecCc----cEEEEEeec---cccccccc-ccccccccccccccCC
Confidence 579999999999999864 2 99999999999874 567766532 12333333 5566667899999999
Q ss_pred cccccCCCceEEEEeecccCCCCceEEEEcCCCCceeccC
Q 040426 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120 (120)
Q Consensus 81 ~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~n 120 (120)
.||+|||++|+|||+|+||||||||+||+|++|||+|++|
T Consensus 74 ~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~~n 113 (122)
T 1twf_I 74 ECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD 113 (122)
T ss_dssp CCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred CCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEeccC
Confidence 9999999999999999999999999999999999999986
No 2
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-42 Score=229.42 Aligned_cols=105 Identities=19% Similarity=0.487 Sum_probs=87.2
Q ss_pred CCcccCccCCCcccccCC------cEEeCCCCCeeeccccccceEEEeeehhHHhhhhccccccccCCCccccccccccc
Q 040426 7 RDFLFCKFCGTMLRMESN------HVVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVKR 80 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~------~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~~~~~~ 80 (120)
..|.|||+|||||+|+++ .|+|++|||++++++ ..+|+.... +..++. ..|+.++..|+++|+++.
T Consensus 2 ~~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~~----~~v~~~~~~---~~~~e~-~~v~~~~~~~~tlp~~~~ 73 (113)
T 3h0g_I 2 SNFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAAT----SKVYRHELQ---SSNVEN-TTVSHDASTDPTLPRSDK 73 (113)
T ss_dssp -CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCSC----SEEEECCCC---SCSCTT-CTTCTTSTTCSSSCBCCS
T ss_pred CcceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcCC----CeEEEEEEe---cccccc-cceeccccccccCCCccc
Confidence 468999999999999975 299999999999876 356654321 112222 236777778999999999
Q ss_pred cccccCCCceEEEEeecccCCCCceEEEEcCCCCceecc
Q 040426 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 81 ~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~ 119 (120)
.||+|||++|+|||+|+||||||||+||+|++|||+|++
T Consensus 74 ~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~~ 112 (113)
T 3h0g_I 74 ECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFEE 112 (113)
T ss_dssp CCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCCC
T ss_pred CCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEec
Confidence 999999999999999999999999999999999999997
No 3
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-43 Score=240.36 Aligned_cols=107 Identities=30% Similarity=0.582 Sum_probs=34.0
Q ss_pred CCCcccCccCCCcccccCCc------EEeCCCCCeeeccccccceEEEeeehhHHhhhhccccccccCCCcccccccccc
Q 040426 6 GRDFLFCKFCGTMLRMESNH------VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSKVK 79 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~~------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~~~~~ 79 (120)
..+|+|||+|||||+|+++. |+|++|||++++++ .++|+.... ...+.+ ..++.++..||++|+++
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~~----~~v~r~~~~---~~~~e~-~~vv~dv~~dptlp~t~ 92 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGS----PLVYRHELI---TNIGET-AGVVQDIGSDPTLPRSD 92 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCSC----SEEEECCC----------------------------
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcCC----ceEEEEEee---cccccc-ceeEeeccccccCCccc
Confidence 35689999999999999752 99999999998876 467765432 112222 23556667789999999
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCceeccC
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~n 120 (120)
+.||+|||++|+|||+|+||||||||+||+|++|||+|++|
T Consensus 93 ~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~w~en 133 (133)
T 3qt1_I 93 RECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHRWKEN 133 (133)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCEeCcC
Confidence 99999999999999999999999999999999999999997
No 4
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.93 E-value=8e-27 Score=138.66 Aligned_cols=50 Identities=36% Similarity=0.701 Sum_probs=47.3
Q ss_pred cccccccccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceeccC
Q 040426 71 GETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120 (120)
Q Consensus 71 ~~~t~~~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~n 120 (120)
.++++|++.++||+|||++|+|+|+|+||||||||+||+|++|||+|++|
T Consensus 7 ~~~~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~~ 56 (57)
T 1qyp_A 7 DLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRSY 56 (57)
T ss_dssp CCSSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEECC
T ss_pred hhhcCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEeccC
Confidence 46888888999999999999999999999999999999999999999985
No 5
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.93 E-value=1.4e-26 Score=134.07 Aligned_cols=43 Identities=40% Similarity=0.689 Sum_probs=40.7
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceecc
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~ 119 (120)
+.+..||+|||++|+|||+|+||||||||+||+|++|||+|+-
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF 49 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEEC
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEEe
Confidence 5678999999999999999999999999999999999999983
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.82 E-value=1.9e-21 Score=138.97 Aligned_cols=47 Identities=32% Similarity=0.616 Sum_probs=42.6
Q ss_pred ccccc---cccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 72 ETQLS---KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 72 ~~t~~---~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
+|+++ +....||+|||++|+|||+|+||||||||+||+|++|||+|+
T Consensus 127 ~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 127 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp CCCCCCCCBSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred hccccCCCcCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 35544 457899999999999999999999999999999999999997
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.76 E-value=3e-19 Score=137.07 Aligned_cols=42 Identities=40% Similarity=0.735 Sum_probs=39.8
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
+....||+|||++++|||+|+||||||||+||+|++|||+|+
T Consensus 266 ~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 266 TDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 346789999999999999999999999999999999999997
No 8
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=98.05 E-value=3e-06 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.677 Sum_probs=23.9
Q ss_pred CCcccCccCCCccccc--CCcEEeCCCCCeee
Q 040426 7 RDFLFCKFCGTMLRME--SNHVVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~--~~~~~C~~C~~~~~ 36 (120)
..+.|||.||+++... .+++.|.+|||++-
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEEE
Confidence 3478999999977644 34599999999863
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.67 E-value=2.1e-05 Score=44.77 Aligned_cols=31 Identities=23% Similarity=0.597 Sum_probs=24.6
Q ss_pred CCCcccCccCCC--cccccCCcEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGT--MLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~Cgn--lL~~~~~~~~C~~C~~~~~ 36 (120)
.....|||.||. ++.+..++++|..|||++-
T Consensus 16 ~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~~ 48 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVFMADHGDRWACGKCGYTEW 48 (50)
T ss_dssp ECSSEECSSSCSSCEEEECSSEEECSSSCCEEE
T ss_pred EEecccCCCCCCceEEecCCCeEECCCCCCEEE
Confidence 345789999998 6666666699999999863
No 10
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=97.45 E-value=0.00028 Score=53.91 Aligned_cols=71 Identities=18% Similarity=0.465 Sum_probs=48.9
Q ss_pred CcccCccCCCcccc---c----CCc---EEeCCCCCeeeccccccceEEEeeehhHHhhhhccccccccCCCcccccccc
Q 040426 8 DFLFCKFCGTMLRM---E----SNH---VVCSSCKFKKNVQDVADREISYAVTAEEIKRELGISLFEQPQGDKGETQLSK 77 (120)
Q Consensus 8 ~~~FCp~CgnlL~~---~----~~~---~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~~~ 77 (120)
...+||.||+.=.. . .++ +.|..|++....
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~---------------------------------------- 220 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY---------------------------------------- 220 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC----------------------------------------
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee----------------------------------------
Confidence 35799999975322 1 122 999999998743
Q ss_pred ccccccccCCC-ceEEEEeecccC--CCCceEEEEcCCCCceec
Q 040426 78 VKRACEKCQNP-EMYYSTRQTRSA--DEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 78 ~~~~CpkCg~~-ea~y~~~Q~RSA--DE~~T~fY~C~~C~~~w~ 118 (120)
....||.||+. ...||++-.-++ +++....+.|.+|++.++
T Consensus 221 ~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~~YlK 264 (309)
T 2fiy_A 221 VRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGYLK 264 (309)
T ss_dssp CTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTEEEE
T ss_pred cCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEcccccchHh
Confidence 24569999996 456765521111 457789999999998775
No 11
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=96.27 E-value=0.0049 Score=32.41 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=26.5
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
+.||.||+++-.+.- +.-.+|.+|..||+++.
T Consensus 1 VlC~~C~~peT~l~~-------~~~~~~l~C~aCG~~~~ 32 (36)
T 1k81_A 1 VICRECGKPDTKIIK-------EGRVHLLKCMACGAIRP 32 (36)
T ss_dssp CCCSSSCSCEEEEEE-------ETTEEEEEEETTTEEEE
T ss_pred CCCcCCCCCCcEEEE-------eCCcEEEEhhcCCCccc
Confidence 469999999997654 35789999999999875
No 12
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=95.47 E-value=0.0092 Score=33.08 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=12.6
Q ss_pred cccccccCCCceEEE
Q 040426 79 KRACEKCQNPEMYYS 93 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~ 93 (120)
++.||.||+.+..|-
T Consensus 30 dw~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 30 DWCCPVCGVSKDQFS 44 (46)
T ss_dssp TCBCTTTCCBGGGEE
T ss_pred CCcCcCCCCcHHHcE
Confidence 578999999987764
No 13
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=95.11 E-value=0.0086 Score=40.25 Aligned_cols=28 Identities=32% Similarity=0.923 Sum_probs=21.1
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
-.||+|+..-.|- | |. .|+|+.|+|.|.
T Consensus 28 P~CP~C~seytYe--------D-g~--l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYE--------D-GA--LLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEE--------C-SS--SEEETTTTEEEC
T ss_pred CCCCCCCCcceEe--------c-CC--eEECCccccccC
Confidence 4699999876652 1 11 299999999996
No 14
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=95.06 E-value=0.0098 Score=35.94 Aligned_cols=29 Identities=31% Similarity=0.607 Sum_probs=25.0
Q ss_pred ccCccCCCcccccCCc--EEeCCCCCeeecccc
Q 040426 10 LFCKFCGTMLRMESNH--VVCSSCKFKKNVQDV 40 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~~ 40 (120)
.=|| ||++++.+... -.|+ ||....++..
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~ 35 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTVNVKDR 35 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEEECCSS
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCeeeeceE
Confidence 3599 99999999875 9998 9999988773
No 15
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=94.45 E-value=0.052 Score=30.68 Aligned_cols=17 Identities=18% Similarity=0.491 Sum_probs=14.0
Q ss_pred ccccccccCCCceEEEE
Q 040426 78 VKRACEKCQNPEMYYST 94 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~ 94 (120)
.++.||.||..+..|..
T Consensus 34 ~dw~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 34 DDWVCPLCGAPKSEFER 50 (52)
T ss_dssp TTCBCTTTCCBGGGEEE
T ss_pred CCCcCCCCCCCHHHcEE
Confidence 46789999999887764
No 16
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=94.36 E-value=0.038 Score=32.97 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=30.0
Q ss_pred CCCCCcccCccCCCcccccCCc--EEeCCCCCeeeccc
Q 040426 4 PLGRDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~ 39 (120)
.....+.-||.|+.-|...... +.|..|+..+++.+
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 3 KKFLDILVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CSSSCCCBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hHHhhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 3456788999999999887543 99999999999877
No 17
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=94.33 E-value=0.032 Score=37.66 Aligned_cols=14 Identities=14% Similarity=0.774 Sum_probs=12.3
Q ss_pred EEeCCCCCeeeccc
Q 040426 26 VVCSSCKFKKNVQD 39 (120)
Q Consensus 26 ~~C~~C~~~~~~~~ 39 (120)
+.|+.|||....+.
T Consensus 71 ~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 71 FKCRNCNYEWKLKE 84 (139)
T ss_dssp EEETTTCCEEEGGG
T ss_pred EECCCCCCEEeccc
Confidence 99999999987655
No 18
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=94.29 E-value=0.037 Score=33.21 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=30.2
Q ss_pred CCCCCcccCccCCCcccccCCc--EEeCCCCCeeeccc
Q 040426 4 PLGRDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~ 39 (120)
.....+.-||.|+.-|...... +.|..|+..+++.+
T Consensus 3 ~~LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 3 SRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CCCCCCCBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred hHHhhheECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 3456788999999999877543 99999999999877
No 19
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=94.25 E-value=0.053 Score=31.01 Aligned_cols=18 Identities=11% Similarity=0.381 Sum_probs=14.9
Q ss_pred ccccccccCCCceEEEEe
Q 040426 78 VKRACEKCQNPEMYYSTR 95 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~ 95 (120)
.++.||.||..+..|..+
T Consensus 35 ~dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp TTCCCTTTCCCGGGEEEC
T ss_pred CCCcCCCCCCCHHHceec
Confidence 367899999999888654
No 20
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=94.23 E-value=0.03 Score=31.06 Aligned_cols=29 Identities=21% Similarity=0.553 Sum_probs=21.4
Q ss_pred cccCccCCC-cccccCC-c-EEeCCCCCeeec
Q 040426 9 FLFCKFCGT-MLRMESN-H-VVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~Cgn-lL~~~~~-~-~~C~~C~~~~~~ 37 (120)
...||.||. -|..... . ++|..||...+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 457999998 5554433 3 999999997753
No 21
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=94.21 E-value=0.039 Score=31.53 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=13.9
Q ss_pred ccccccccCCCceEEEE
Q 040426 78 VKRACEKCQNPEMYYST 94 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~ 94 (120)
.++.||.||..+..|..
T Consensus 35 ~dw~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 35 DDWVCPLCGVGKDEFEE 51 (54)
T ss_dssp TTCBCTTTCCBGGGEEE
T ss_pred CCCcCcCCCCcHHHceE
Confidence 36899999999887754
No 22
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=94.13 E-value=0.079 Score=32.70 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=15.6
Q ss_pred ccccccccCCCceEEEEee
Q 040426 78 VKRACEKCQNPEMYYSTRQ 96 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q 96 (120)
.++.||.||..+..|..+.
T Consensus 59 ddW~CPvCga~K~~F~~i~ 77 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDFEMVE 77 (81)
T ss_dssp TTCCCTTTCCCGGGEEEEC
T ss_pred CCCcCCCCCCCHHHcEEcc
Confidence 3689999999999887653
No 23
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=93.96 E-value=0.061 Score=30.98 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCCCcccCccCCC-cccccCC-c-EEeCCCCCeee
Q 040426 4 PLGRDFLFCKFCGT-MLRMESN-H-VVCSSCKFKKN 36 (120)
Q Consensus 4 ~~~~~~~FCp~Cgn-lL~~~~~-~-~~C~~C~~~~~ 36 (120)
+.....+.||+||+ -|..... + ++|..||.+..
T Consensus 6 ~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 6 LDALPRVTCPNHPDAILVEDYRAGDMICPECGLVVG 41 (58)
T ss_dssp CCCCSCCSBTTBSSSCCEECSSSCCEECTTTCCEEC
T ss_pred hhccccccCcCCCCCceeEeCCCCeEEeCCCCCEEe
Confidence 44455668999987 3333322 3 99999999864
No 24
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=93.84 E-value=0.049 Score=30.82 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.0
Q ss_pred ccccccccCCCceEEE
Q 040426 78 VKRACEKCQNPEMYYS 93 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~ 93 (120)
.++.||.||..+..|.
T Consensus 35 ~dw~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 35 DDWACPVCGASKDAFE 50 (52)
T ss_dssp TTCCCSSSCCCTTSCE
T ss_pred CCCcCCCCCCcHHHcE
Confidence 3678999999987664
No 25
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=93.78 E-value=0.043 Score=32.84 Aligned_cols=35 Identities=17% Similarity=0.419 Sum_probs=29.2
Q ss_pred CCCCcccCccCCCcccccCCc--EEeCCCCCeeeccc
Q 040426 5 LGRDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQD 39 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~ 39 (120)
....+.-||.|+.-|...... +.|..|+..+++.+
T Consensus 4 ~LLeiL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 4 KLLDILACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CGGGTCCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred HHHhheeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 345678999999999876543 99999999999877
No 26
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=93.75 E-value=0.037 Score=33.03 Aligned_cols=35 Identities=17% Similarity=0.468 Sum_probs=29.2
Q ss_pred CCCCcccCccCCCcccccCCc--EEeCCCCCeeeccc
Q 040426 5 LGRDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQD 39 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~ 39 (120)
....+.-||.|+.-|...... +.|..|+..+++.+
T Consensus 4 ~LL~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 4 KFLEILVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CCEEECBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred HHhhheECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 345678999999998876543 99999999999877
No 27
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=93.69 E-value=0.062 Score=33.14 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=21.8
Q ss_pred CcccCccCCCcccccCCc--EEeCCCCCeee
Q 040426 8 DFLFCKFCGTMLRMESNH--VVCSSCKFKKN 36 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~ 36 (120)
.+.+||.|++++....+. +.|..|++..=
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC 54 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFC 54 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEEC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccc
Confidence 456899999987665443 88988888753
No 28
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.54 E-value=0.083 Score=29.16 Aligned_cols=33 Identities=24% Similarity=0.760 Sum_probs=22.7
Q ss_pred cccccccCCCceEEEEeecccCCCCceEEEEcCCCCceeccC
Q 040426 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQES 120 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~n 120 (120)
...||.||.....|- +.+--.+|..||..+.++
T Consensus 5 ~~~CP~C~~~~l~~d---------~~~gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 5 QKVCPACESAELIYD---------PERGEIVCAKCGYVIEEN 37 (50)
T ss_dssp CCSCTTTSCCCEEEE---------TTTTEEEESSSCCBCCCC
T ss_pred cEeCcCCCCcceEEc---------CCCCeEECcccCCccccc
Confidence 457999999666552 122238999999977653
No 29
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=93.52 E-value=0.074 Score=31.90 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=15.1
Q ss_pred ccccccccCCCceEEEEe
Q 040426 78 VKRACEKCQNPEMYYSTR 95 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~ 95 (120)
.++.||.||..+..|..+
T Consensus 39 ddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 39 DSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp TTCBCTTTCCBGGGEEEC
T ss_pred CCCcCCCCCCCHHHceEc
Confidence 367999999999988764
No 30
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=93.14 E-value=0.074 Score=31.63 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=29.9
Q ss_pred CCCCCcccCccCCCcccccCCc--EEeCCCCCeeeccc
Q 040426 4 PLGRDFLFCKFCGTMLRMESNH--VVCSSCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~~~~ 39 (120)
.....+.-||.|+.-|...... +.|..|+..+++.+
T Consensus 5 ~~LLeiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp GGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred HHHHHHhCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 4456788999999988876543 99999999999876
No 31
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=93.12 E-value=0.067 Score=34.92 Aligned_cols=12 Identities=17% Similarity=0.487 Sum_probs=10.0
Q ss_pred EEeCCCCCeeec
Q 040426 26 VVCSSCKFKKNV 37 (120)
Q Consensus 26 ~~C~~C~~~~~~ 37 (120)
+.|+.||+....
T Consensus 74 ~~C~~CG~~~e~ 85 (119)
T 2kdx_A 74 LECKDCSHVFKP 85 (119)
T ss_dssp EECSSSSCEECS
T ss_pred EEcCCCCCEEeC
Confidence 999999997754
No 32
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=93.11 E-value=0.08 Score=33.11 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=14.8
Q ss_pred ccccccccCCCceEEEEe
Q 040426 78 VKRACEKCQNPEMYYSTR 95 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~ 95 (120)
.++.||-||..+..|..+
T Consensus 67 ddW~CPvCga~K~~F~~i 84 (87)
T 1s24_A 67 DDWCCPDCGATKEDYVLY 84 (87)
T ss_dssp TTCCCSSSCCCGGGEEEC
T ss_pred CCCCCCCCCCCHHHhhhc
Confidence 367999999999888654
No 33
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=92.82 E-value=0.091 Score=31.46 Aligned_cols=31 Identities=26% Similarity=0.630 Sum_probs=24.5
Q ss_pred CCCCcccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 5 LGRDFLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
....+.||..||++| -..++.|..|+|....
T Consensus 31 ~~~~pt~C~~C~~~l--~~qG~kC~~C~~~cHk 61 (72)
T 2fnf_X 31 LRGGPGWCDLCGREV--LRQALRCANCKFTCHS 61 (72)
T ss_dssp CCSSCCBCTTTSSBC--SSCCEECTTSSCEECT
T ss_pred cCCCCcchhhhhHHH--HhCcCccCCCCCeech
Confidence 356788999999999 3334999999998653
No 34
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=92.81 E-value=0.054 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.662 Sum_probs=21.1
Q ss_pred CcccCccCCCcccccC-C-----cEEeCCCCCee
Q 040426 8 DFLFCKFCGTMLRMES-N-----HVVCSSCKFKK 35 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~-~-----~~~C~~C~~~~ 35 (120)
.++|||.||..|.... + ...|..|++..
T Consensus 2 ~~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~ 35 (189)
T 3cng_A 2 HMKFCSQCGGEVILRIPEGDTLPRYICPKCHTIH 35 (189)
T ss_dssp -CCBCTTTCCBCEEECCTTCSSCEEEETTTTEEE
T ss_pred CcccCchhCCccccccccCCCCcceECCCCCCcc
Confidence 4789999999997642 1 28999999543
No 35
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=92.57 E-value=0.071 Score=37.26 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=25.0
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
...|++||+.|.|..+.+.|+.||..+..
T Consensus 140 ~a~~~~~g~~m~~~~~~~~cp~~g~~e~R 168 (179)
T 3m7n_A 140 RALCSNCKTEMVREGDILKCPECGRVEKR 168 (179)
T ss_dssp ECBCTTTCCBCEECSSSEECSSSCCEECC
T ss_pred EecccccCCceEECCCEEECCCCCCEEEE
Confidence 45899999999998755999999998864
No 36
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=92.44 E-value=0.056 Score=38.18 Aligned_cols=14 Identities=21% Similarity=0.757 Sum_probs=11.7
Q ss_pred cccccCCCceEEEE
Q 040426 81 ACEKCQNPEMYYST 94 (120)
Q Consensus 81 ~CpkCg~~ea~y~~ 94 (120)
.||.||+++..|-.
T Consensus 173 ~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 173 LCPACAHPKAHFEL 186 (191)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred CCCCCcCCHHHHHh
Confidence 79999999887743
No 37
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=92.07 E-value=0.1 Score=29.89 Aligned_cols=30 Identities=27% Similarity=0.662 Sum_probs=23.8
Q ss_pred CCCCcccCccCCCcccccCCcEEeCCCCCeee
Q 040426 5 LGRDFLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
....+.||..||++| -..++.|..|++...
T Consensus 18 ~~~~pt~C~~C~~~i--~kqg~kC~~C~~~cH 47 (59)
T 1rfh_A 18 LRGGPGWCDLCGREV--LRQALRCANCKFTCH 47 (59)
T ss_dssp CSSCCEECTTTCSEE--CSCCEECTTTSCEEC
T ss_pred ccCCCeEchhcchhh--hhCccEeCCCCCeEe
Confidence 346688999999999 233499999999764
No 38
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=92.02 E-value=0.21 Score=28.56 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=30.7
Q ss_pred CCCCCcccCccCCCcccccCCcEEeC--CCCCeeeccc
Q 040426 4 PLGRDFLFCKFCGTMLRMESNHVVCS--SCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~~~~C~--~C~~~~~~~~ 39 (120)
.....+.-||.|+.-|....+.+.|. .|+..+++.+
T Consensus 5 ~~lL~iL~CP~c~~~L~~~~~~L~C~~~~c~~~YPI~d 42 (56)
T 2kpi_A 5 AGLLEILACPACHAPLEERDAELICTGQDCGLAYPVRD 42 (56)
T ss_dssp CSCTTSCCCSSSCSCEEEETTEEEECSSSCCCEEEEET
T ss_pred HHHHhheeCCCCCCcceecCCEEEcCCcCCCcEEeeEC
Confidence 44567889999999998887669999 9999999876
No 39
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=91.89 E-value=0.19 Score=33.04 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=26.6
Q ss_pred CCCCCCcccCccCCCcccccCC-----------c--EEeCCCCCeeec
Q 040426 3 DPLGRDFLFCKFCGTMLRMESN-----------H--VVCSSCKFKKNV 37 (120)
Q Consensus 3 ~~~~~~~~FCp~CgnlL~~~~~-----------~--~~C~~C~~~~~~ 37 (120)
.+....-.||..||++|.|-.+ . +.|-.||++.-.
T Consensus 59 lp~~~KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 59 IPRKWKRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRY 106 (120)
T ss_dssp CCTTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEE
T ss_pred CCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 3444556799999999998753 1 789999998654
No 40
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=91.49 E-value=0.19 Score=33.24 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=26.7
Q ss_pred CCCCCCcccCccCCCcccccCCc-------------EEeCCCCCeeec
Q 040426 3 DPLGRDFLFCKFCGTMLRMESNH-------------VVCSSCKFKKNV 37 (120)
Q Consensus 3 ~~~~~~~~FCp~CgnlL~~~~~~-------------~~C~~C~~~~~~ 37 (120)
.+....-.||..||++|.|-.+. +.|-.||++.-.
T Consensus 54 lp~~~KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~ 101 (123)
T 2k3r_A 54 IPRKWKRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRY 101 (123)
T ss_dssp CSSTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEE
T ss_pred CCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 34445567999999999987531 889999998654
No 41
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=91.25 E-value=0.12 Score=38.21 Aligned_cols=30 Identities=23% Similarity=0.729 Sum_probs=24.6
Q ss_pred CCcccCccCCCcccccCCc--EEeCCCCCeee
Q 040426 7 RDFLFCKFCGTMLRMESNH--VVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~~--~~C~~C~~~~~ 36 (120)
..++|||.||.-+....+. ..|..|++..-
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~~y 136 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRERYY 136 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSCEEC
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCCEec
Confidence 3578999999999776554 99999999754
No 42
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=91.25 E-value=0.096 Score=36.43 Aligned_cols=14 Identities=21% Similarity=0.622 Sum_probs=11.6
Q ss_pred cccccCCCceEEEE
Q 040426 81 ACEKCQNPEMYYST 94 (120)
Q Consensus 81 ~CpkCg~~ea~y~~ 94 (120)
.||-||+++..|-.
T Consensus 155 ~CP~Cg~~~~~F~~ 168 (170)
T 3pwf_A 155 YCPVCGAPKEKFVV 168 (170)
T ss_dssp BCTTTCCBGGGCEE
T ss_pred CCCCCCCCHHHcee
Confidence 79999999887653
No 43
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.19 E-value=0.073 Score=32.96 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=22.4
Q ss_pred cccCccCCCcccccC-Cc-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMES-NH-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~-~~-~~C~~C~~~~~~~~ 39 (120)
...||.||.-+.... .. |.|+.|++...--.
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 358999998554433 33 99999999876543
No 44
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=91.18 E-value=0.1 Score=38.40 Aligned_cols=32 Identities=25% Similarity=0.620 Sum_probs=22.7
Q ss_pred cccCccCCCc-c-cccCCc----EEeCCCCCeeecccc
Q 040426 9 FLFCKFCGTM-L-RMESNH----VVCSSCKFKKNVQDV 40 (120)
Q Consensus 9 ~~FCp~Cgnl-L-~~~~~~----~~C~~C~~~~~~~~~ 40 (120)
-.+||.||+. | ..+.++ |.|..|+-..+.++.
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk 71 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSK 71 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEE
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhheeccc
Confidence 4699999994 4 444443 999999999887763
No 45
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=90.86 E-value=0.13 Score=33.48 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=21.5
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
.-||+||+--. .+..++.-.+.|.|..|+|.+-
T Consensus 5 ~FCp~Cgn~L~------~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 5 QYCIECNNMLY------PREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCSSSCCCCE------ECCCTTTCCCCEECSSSCCEEC
T ss_pred eeCcCCCCEee------EcccCCCCeeEEECCCCCCeEE
Confidence 45999998622 2333333456788999998763
No 46
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.60 E-value=0.07 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=19.4
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCe
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFK 34 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~ 34 (120)
...-||.||..+.+ ..+.|+.|||.
T Consensus 13 ~k~iCpkC~a~~~~--gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPW--GAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECT--TCSSCSSSSSC
T ss_pred CCccCCCCCCcCCC--CceecCCCCCc
Confidence 45689999998332 23999999998
No 47
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=90.46 E-value=0.17 Score=27.85 Aligned_cols=29 Identities=28% Similarity=0.647 Sum_probs=23.6
Q ss_pred CCCcccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
...+.||..|+.+|. .++.|+.|++....
T Consensus 11 ~~~pt~C~~C~~~l~---qG~~C~~C~~~~H~ 39 (52)
T 1faq_A 11 FLKLAFCDICQKFLL---NGFRCQTCGYKFHE 39 (52)
T ss_dssp CSSCEECTTSSSEEC---SEEECTTTTCCBCS
T ss_pred CCCCcCCCCcccccc---cCCEeCCCCCeECh
Confidence 345789999999997 45999999987643
No 48
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=90.45 E-value=0.082 Score=35.51 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=23.7
Q ss_pred cccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
-.-||+||+- |..+...+.-.+.|.|.+|+|.+.
T Consensus 24 ~~FCPeCgNm------L~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 24 FRFCRDCNNM------LYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCBCTTTCCB------CBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred CeeCCCCCCE------eeECccCCCceeEEECCCCCCcEE
Confidence 4569999984 233444444577899999999753
No 49
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=90.19 E-value=0.17 Score=30.29 Aligned_cols=26 Identities=23% Similarity=0.614 Sum_probs=19.4
Q ss_pred cCccCCCcccccCC-cEEeCCCCCeee
Q 040426 11 FCKFCGTMLRMESN-HVVCSSCKFKKN 36 (120)
Q Consensus 11 FCp~CgnlL~~~~~-~~~C~~C~~~~~ 36 (120)
-|++||....+... .+.|+.||+..-
T Consensus 30 ~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 30 ICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp ECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred ECCCCCCcceeCCCCCccCCCCCceEe
Confidence 59999988655543 389999999543
No 50
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=90.19 E-value=0.12 Score=36.80 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=11.7
Q ss_pred ccccccCCCceEEE
Q 040426 80 RACEKCQNPEMYYS 93 (120)
Q Consensus 80 ~~CpkCg~~ea~y~ 93 (120)
+.||-||+++..|.
T Consensus 187 ~~CP~C~~~k~~F~ 200 (202)
T 1yuz_A 187 EKCPICFRPKDTFT 200 (202)
T ss_dssp SBCTTTCCBGGGCE
T ss_pred CCCCCCCCChHHhe
Confidence 67999999987664
No 51
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=89.70 E-value=0.29 Score=28.07 Aligned_cols=30 Identities=23% Similarity=0.605 Sum_probs=20.9
Q ss_pred cccccCCCceEEEEeecccCCCCceEEEEcCCCCceecc
Q 040426 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 81 ~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~ 119 (120)
.||.||....+|= .+.|. ++|..||....+
T Consensus 13 ~Cp~C~~~~lv~D------~~~ge---~vC~~CGlVl~e 42 (58)
T 1dl6_A 13 TCPNHPDAILVED------YRAGD---MICPECGLVVGD 42 (58)
T ss_dssp SBTTBSSSCCEEC------SSSCC---EECTTTCCEECC
T ss_pred cCcCCCCCceeEe------CCCCe---EEeCCCCCEEec
Confidence 6999999776551 11222 889999987654
No 52
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=89.68 E-value=0.25 Score=30.54 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=22.6
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
....||.||.+ ++|-. .+-...|..||+.+.
T Consensus 26 ~~y~Cp~CG~~-~v~r~---------atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGED-RVDRQ---------GTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCE-EEEEE---------ETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCc-ceecc---------CCCeEECCCCCCEec
Confidence 46789999974 44533 234799999999864
No 53
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=89.66 E-value=0.35 Score=26.25 Aligned_cols=31 Identities=23% Similarity=0.560 Sum_probs=24.2
Q ss_pred CCCcccCccCCCcccc-cCCcEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRM-ESNHVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~-~~~~~~C~~C~~~~~ 36 (120)
...+.||..|+.+|.- ....+.|..|++...
T Consensus 8 ~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H 39 (50)
T 1ptq_A 8 YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVH 39 (50)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCCcCCCCceeeccCCccCEeCCCCCeEC
Confidence 4568899999999963 234499999998754
No 54
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=89.45 E-value=0.12 Score=31.77 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=10.9
Q ss_pred CCCCcccCccCCCc
Q 040426 5 LGRDFLFCKFCGTM 18 (120)
Q Consensus 5 ~~~~~~FCp~Cgnl 18 (120)
..++-.|||.|||-
T Consensus 26 ~~~~k~FCp~CGn~ 39 (79)
T 2con_A 26 SDMNRVFCGHCGNK 39 (79)
T ss_dssp SCSSCCSCSSSCCS
T ss_pred CCcccccccccCcc
Confidence 34567899999984
No 55
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.75 E-value=0.32 Score=28.53 Aligned_cols=30 Identities=17% Similarity=0.534 Sum_probs=23.9
Q ss_pred ccCccCCCcccccCCc-EEeCCCCCeeeccc
Q 040426 10 LFCKFCGTMLRMESNH-VVCSSCKFKKNVQD 39 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~-~~C~~C~~~~~~~~ 39 (120)
--|.+||....++... +.|+.|||..-.+.
T Consensus 22 Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~ 52 (63)
T 3h0g_L 22 YLCADCGARNTIQAKEVIRCRECGHRVMYKM 52 (63)
T ss_dssp CBCSSSCCBCCCCSSSCCCCSSSCCCCCBCC
T ss_pred EECCCCCCeeecCCCCceECCCCCcEEEEEe
Confidence 4699999998887654 99999999765444
No 56
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=88.35 E-value=0.44 Score=33.23 Aligned_cols=32 Identities=34% Similarity=0.648 Sum_probs=26.6
Q ss_pred ccccccCCCceEEEEeecccCC-CCceEEEEcCCCCcee
Q 040426 80 RACEKCQNPEMYYSTRQTRSAD-EGQTTYYICPRCGHRC 117 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSAD-E~~T~fY~C~~C~~~w 117 (120)
+.|+.|++++..+.- | +.-.+|-.|..||++-
T Consensus 97 VlC~~C~sPdT~L~k------~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHV------NPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEE------ETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEE------ecCCCEEEEEccccCCcc
Confidence 689999999997753 3 5788999999999864
No 57
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=87.52 E-value=0.61 Score=26.92 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=24.6
Q ss_pred CCCcccCccCCCcccc-cCCcEEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRM-ESNHVVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~-~~~~~~C~~C~~~~~~ 37 (120)
...+.||..|+.+|.- -...+.|..|++....
T Consensus 20 ~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk 52 (65)
T 2enz_A 20 YKSPTFCEHCGTLLWGLARQGLKCDACGMNVHH 52 (65)
T ss_dssp CCSCCBCSSSCCBCCCSSSCSEEESSSCCEECT
T ss_pred CCCCcCchhcChhheecCCcccccCCCCCccCH
Confidence 4567899999999974 2334999999997653
No 58
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=87.08 E-value=0.43 Score=31.98 Aligned_cols=30 Identities=20% Similarity=0.490 Sum_probs=24.8
Q ss_pred CcccCccCCCcccccCCc-EEeCCCCCeeec
Q 040426 8 DFLFCKFCGTMLRMESNH-VVCSSCKFKKNV 37 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~-~~C~~C~~~~~~ 37 (120)
.+.=||.|++-...+.+. |+|+-|++.+..
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW~~ 56 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEWSP 56 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEECT
T ss_pred cCCCCCCCCCcceEecCCeEECCccccccCC
Confidence 467899999987777655 999999999953
No 59
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=87.00 E-value=0.65 Score=26.78 Aligned_cols=31 Identities=23% Similarity=0.550 Sum_probs=24.1
Q ss_pred CCCcccCccCCCccccc-CCcEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRME-SNHVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~-~~~~~C~~C~~~~~ 36 (120)
...+.||..|+.+|.-- ...+.|..|++...
T Consensus 17 ~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~H 48 (65)
T 3uej_A 17 YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVH 48 (65)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCcccccChhhhccCceeeECCCCCCeEc
Confidence 35678999999999642 33499999998764
No 60
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.83 E-value=0.66 Score=31.93 Aligned_cols=33 Identities=33% Similarity=0.596 Sum_probs=26.7
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCcee
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w 117 (120)
+.|+.|++++..+.- ..|.-+.|-.|..||++-
T Consensus 104 VlC~~C~sPdT~L~~-----~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECENPETDLHV-----NPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCCSCCEEEE-----ETTTTEEEEECSSSCCEE
T ss_pred EECCCCCCCccEEEE-----ecCCCEEEEEccCCCCCC
Confidence 689999999987643 135778999999999864
No 61
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=86.26 E-value=0.32 Score=31.88 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=21.2
Q ss_pred cccCccCCCccccc--CCc-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRME--SNH-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~--~~~-~~C~~C~~~~~~~~ 39 (120)
-.+||.||.. .+. ... |.|+.|++..---.
T Consensus 60 kytCPfCGk~-~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 60 DHACPNCGED-RVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp CEECSSSCCE-EEEEEETTEEEETTTCCEEECCS
T ss_pred CCcCCCCCCc-eeEecCceeEECCCCCCEEECCC
Confidence 4589999973 332 223 99999999975443
No 62
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=86.06 E-value=0.74 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=23.7
Q ss_pred CCCcccCccCCCcccccCC-cEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRMESN-HVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~-~~~C~~C~~~~~ 36 (120)
...+.||..|+.+|.--.. .+.|..|++...
T Consensus 21 ~~~pt~C~~C~~~l~Gl~~qg~~C~~C~~~~H 52 (66)
T 1y8f_A 21 ATTPTYCYECEGLLWGIARQGMRCTECGVKCH 52 (66)
T ss_dssp CSSCCCCTTTCCCCCSSCCEEEEETTTCCEEC
T ss_pred CCCCcChhhcChhhcccCcceeEcCCCCCeeC
Confidence 3467899999999964322 399999999754
No 63
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.73 E-value=0.75 Score=27.88 Aligned_cols=32 Identities=16% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCCcccCccCCCcccc-cCCcEEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRM-ESNHVVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~-~~~~~~C~~C~~~~~~ 37 (120)
...+.||..|+.+|.- -...|.|..|++....
T Consensus 25 ~~~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk 57 (83)
T 2yuu_A 25 FGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHK 57 (83)
T ss_dssp CSSCCCCSSSCCCCCSSSCCEEEETTTCCEECT
T ss_pred CCCCcChhhcChhhccccccccccCCcCCeeCh
Confidence 3567899999999963 3344999999998654
No 64
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=84.45 E-value=1.4 Score=26.26 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=22.2
Q ss_pred ccccccCCCceEEEE--eecccCCCCce----EEEEcCCCCcee
Q 040426 80 RACEKCQNPEMYYST--RQTRSADEGQT----TYYICPRCGHRC 117 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~--~Q~RSADE~~T----~fY~C~~C~~~w 117 (120)
.+||-||..++..-. +...-..+-.+ -.+.|..||-.|
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEE
Confidence 479999988664322 22222222121 357899999876
No 65
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=84.23 E-value=0.39 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.606 Sum_probs=21.9
Q ss_pred cccCccCCCcccccCC--c-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMESN--H-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~~~ 39 (120)
-.+||.||.. .++.. . |.|+.|++..---.
T Consensus 36 ky~CpfCgk~-~vkR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 36 KYFCEFCGKF-AVKRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp CBCCTTTCSS-CBEEEETTEEECSSSCCEEECCS
T ss_pred cccCcccCCC-eeEecCcceEEcCCCCCEEeCCc
Confidence 4589999987 44432 2 99999999875443
No 66
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.13 E-value=0.89 Score=27.73 Aligned_cols=32 Identities=22% Similarity=0.545 Sum_probs=24.7
Q ss_pred CCCcccCccCCCccccc-CCcEEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRME-SNHVVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~-~~~~~C~~C~~~~~~ 37 (120)
...+.||..|+.+|.-- ...+.|..|++....
T Consensus 25 ~~~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk 57 (85)
T 2eli_A 25 YGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHK 57 (85)
T ss_dssp CSSCCBCSSSCCBCCCSSSCEEECSSSCCEEET
T ss_pred CCCCcCCcccCccccccccCCCcCCCcCCccCH
Confidence 35678999999999643 234999999998654
No 67
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.67 E-value=0.46 Score=29.37 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=21.7
Q ss_pred cccCccCCCcccccCC--c-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMESN--H-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~~~ 39 (120)
...||.||.. .++.. . |.|+.|++..---.
T Consensus 35 ky~CpfCGk~-~vkR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 35 KHTCPVCGRK-AVKRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp CBCCSSSCSS-CEEEEETTEEEETTTCCEEECCS
T ss_pred ccCCCCCCCc-eeEecCcCeEEcCCCCCEEeCCc
Confidence 4589999987 44432 2 99999999875433
No 68
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=83.46 E-value=0.85 Score=27.30 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=24.6
Q ss_pred CCCcccCccCCCccccc-CCcEEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRME-SNHVVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~-~~~~~C~~C~~~~~~ 37 (120)
...+.||..|+.+|.-- ...+.|..|++....
T Consensus 31 f~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk 63 (77)
T 2enn_A 31 FPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHK 63 (77)
T ss_dssp CSSCEECSSSCCEECCTTCCEEECSSSCCEEES
T ss_pred CCCCcCccccChhhccccccccCcCCCCCcCCH
Confidence 34678999999999743 234999999997653
No 69
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=83.21 E-value=0.9 Score=28.92 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=22.1
Q ss_pred ccCccCCCcccccCCcEEeCCCCCeee
Q 040426 10 LFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
..||.|.+-|......+.|..|+....
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~ 59 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIE 59 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEE
T ss_pred ccCccCCCcceecCCEEECccccchhh
Confidence 599999999998755588999998543
No 70
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=83.09 E-value=0.72 Score=32.58 Aligned_cols=30 Identities=23% Similarity=0.459 Sum_probs=20.9
Q ss_pred CCcccCccCCC---cccc--cCCcEEeCCCCCeee
Q 040426 7 RDFLFCKFCGT---MLRM--ESNHVVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~Cgn---lL~~--~~~~~~C~~C~~~~~ 36 (120)
.....||+||. -|.. ....++|..||.+..
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 34558999997 2333 233399999999864
No 71
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=82.51 E-value=1.4 Score=34.67 Aligned_cols=42 Identities=26% Similarity=0.471 Sum_probs=25.9
Q ss_pred ccccccccCCCceE-EEEeecccCCCCceEEEEcCCCCceecc
Q 040426 78 VKRACEKCQNPEMY-YSTRQTRSADEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 78 ~~~~CpkCg~~ea~-y~~~Q~RSADE~~T~fY~C~~C~~~w~~ 119 (120)
....||.||++... .....+=--.|=.-.-|.|..|||+..+
T Consensus 219 ~~s~Cp~C~~~~~t~~~~~~IP~F~eViims~~C~~CGyr~ne 261 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMKLVQIPHFKEVIIMATNCENCGHRTNE 261 (404)
T ss_dssp EEECCTTTCCTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEE
T ss_pred ecccCccCCCccEEEEEEEeCCCCCcEEEEEEECCCCCCcccc
Confidence 45689999987442 2222221123334556899999998753
No 72
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=82.22 E-value=0.36 Score=32.55 Aligned_cols=31 Identities=26% Similarity=0.746 Sum_probs=25.1
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCcee
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w 117 (120)
+.||.|++++..+.- |+-..|-.|..||++-
T Consensus 103 VlC~~C~sPdT~l~k-------~~r~~~l~C~ACGa~~ 133 (138)
T 1nee_A 103 VICHECNRPDTRIIR-------EGRISLLKCEACGAKA 133 (138)
T ss_dssp HHHTCCSSCSSCCEE-------ETTTTEEECSTTSCCC
T ss_pred EECCCCCCcCcEEEE-------cCCeEEEEccCCCCCc
Confidence 689999999986542 4577999999999863
No 73
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=81.47 E-value=1.2 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.3
Q ss_pred CCCcccCccCCCcccccC-C--cEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRMES-N--HVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~-~--~~~C~~C~~~~~ 36 (120)
...+-||..|+++|.--. . .|.|+.|++...
T Consensus 32 ~~~PT~Cd~C~~~lWGl~kqp~G~~C~~C~~~~H 65 (84)
T 2row_A 32 YHFPTNCEACMKPLWHMFKPPPALECRRCHIKCH 65 (84)
T ss_dssp CSSCEECSSSSSEECCSSSCCCEEEESSSCCEEE
T ss_pred CCCCcchhhcCHhhhccccCCCCCEecCCCCccc
Confidence 345689999999998643 2 599999998764
No 74
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=81.01 E-value=0.3 Score=33.33 Aligned_cols=32 Identities=19% Similarity=0.557 Sum_probs=25.6
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
+.||.||+++.... -|+-..|-.|..||.+..
T Consensus 105 VlC~~C~sPdT~L~-------k~~r~~~l~C~ACGa~~~ 136 (148)
T 2d74_B 105 VICPVCGSPDTKII-------KRDRFHFLKCEACGAETP 136 (148)
T ss_dssp SSCSSSCCTTCCCC-------BSSSSBCCCCSSSCCCCC
T ss_pred EECCCCCCcCcEEE-------EeCCEEEEEecCCCCCcc
Confidence 68999999997543 145788999999998764
No 75
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=80.64 E-value=1.6 Score=33.08 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=24.8
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
....||-||..-..=. +..+ .+++=.+|..|.-|++.|+
T Consensus 181 ~~~~CPvCGs~P~~s~-l~~~-g~~~G~R~l~Cs~C~t~W~ 219 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGM-IRQG-GKETGLRYLSCSLCACEWH 219 (309)
T ss_dssp TCSSCTTTCCCEEEEE-EEC-----CCEEEEEETTTCCEEE
T ss_pred cCCCCCCCCCcCceeE-Eeec-CCCCCcEEEEeCCCCCEEe
Confidence 4568999999744321 2222 2334456899999999996
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.58 E-value=1.5 Score=26.92 Aligned_cols=27 Identities=19% Similarity=0.541 Sum_probs=21.0
Q ss_pred ccCccCCCcccccCCcEEeCCCCCeee
Q 040426 10 LFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
..||+|++.|......+.|..|+....
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~ 29 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFS 29 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEE
T ss_pred CCCCCCCCccccCCCceECccccccCC
Confidence 579999999887655577999987543
No 77
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=80.30 E-value=0.78 Score=27.57 Aligned_cols=28 Identities=29% Similarity=0.554 Sum_probs=20.6
Q ss_pred cccCccCCCcccccCC--c-EEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESN--H-VVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~ 37 (120)
...||.||.. .++.. . +.|+.|++..--
T Consensus 26 ky~C~fCgk~-~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKK-TVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSS-CBSBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCc-eeEecCCCeEECCCCCCEEeC
Confidence 4589999976 44432 2 999999998654
No 78
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.68 E-value=0.54 Score=27.96 Aligned_cols=31 Identities=23% Similarity=0.596 Sum_probs=23.7
Q ss_pred CCcccCccCCCccccc-CCcEEeCCCCCeeec
Q 040426 7 RDFLFCKFCGTMLRME-SNHVVCSSCKFKKNV 37 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~-~~~~~C~~C~~~~~~ 37 (120)
..+.||..|+++|.-- ...+.|+.|++....
T Consensus 26 ~~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk 57 (74)
T 2db6_A 26 KKPKFCDVCARMIVLNNKFGLRCKNCKTNIHE 57 (74)
T ss_dssp SSCEECSSSCCEECHHHHEEEEESSSCCEECT
T ss_pred CCCcCchhcChhhccccCCccccCCCCCccCh
Confidence 4578999999999642 233999999987653
No 79
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=79.36 E-value=2.4 Score=27.17 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred ccccccCCCceEEEEe--ecccCCCCce----EEEEcCCCCceec
Q 040426 80 RACEKCQNPEMYYSTR--QTRSADEGQT----TYYICPRCGHRCQ 118 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~--Q~RSADE~~T----~fY~C~~C~~~w~ 118 (120)
..||.||......-.. ...--++-.+ -.+.|..||..+-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEEC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEee
Confidence 4799999886643221 1122222222 3678999998763
No 80
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=78.96 E-value=0.65 Score=23.90 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=14.7
Q ss_pred CCcccCccCCCcccccCC--c-EEe
Q 040426 7 RDFLFCKFCGTMLRMESN--H-VVC 28 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~--~-~~C 28 (120)
+.+--|+.|||++..-.+ . ++|
T Consensus 4 ~~fY~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 4 GDVYKCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEEE
T ss_pred ccEEEcCCCCcEEEEEeCCCcCEEe
Confidence 345568999999887432 2 666
No 81
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=78.90 E-value=1.2 Score=27.29 Aligned_cols=36 Identities=31% Similarity=0.616 Sum_probs=27.1
Q ss_pred ccccccccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 72 ETQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 72 ~~t~~~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
.|+.--.+++||.|++...+|-..| |+ -.|..||..
T Consensus 25 ~PnS~Fm~VkCp~C~n~q~VFShA~--------t~-V~C~~Cg~~ 60 (81)
T 2xzm_6 25 APNSYFMDVKCAQCQNIQMIFSNAQ--------ST-IICEKCSAI 60 (81)
T ss_dssp CCSCCEEEEECSSSCCEEEEETTCS--------SC-EECSSSCCE
T ss_pred CCCCcEEEeECCCCCCeeEEEecCc--------cE-EEccCCCCE
Confidence 3555568999999999999996533 33 678888864
No 82
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=78.47 E-value=1.3 Score=25.45 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCcccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 7 RDFLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
....||..||..+..-...|.|+.|+.....
T Consensus 17 ~~~~~C~~Cg~~i~~gkq~~kC~dC~~~cH~ 47 (61)
T 4b6d_A 17 IKPESCVPCGKRIKFGKLSLKCRDCRVVSHP 47 (61)
T ss_dssp CSCEECTTTCCEECTTCEEEEESSSSCEECG
T ss_pred cCCcccccccCEEEEeeEeeECCCCCCeEch
Confidence 3468999999988643334999999987643
No 83
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=78.42 E-value=1.1 Score=25.58 Aligned_cols=28 Identities=18% Similarity=0.403 Sum_probs=20.7
Q ss_pred CCCCcccCccCCCcccccCCcEEeCCCCCe
Q 040426 5 LGRDFLFCKFCGTMLRMESNHVVCSSCKFK 34 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~~~~~C~~C~~~ 34 (120)
..-....|-.|+-.|.+... .||.|||.
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~--~CRKCg~~ 42 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRAT--KCRRCHST 42 (56)
T ss_dssp CSCCCEEETTTCCEECTTCS--SCTTTCCC
T ss_pred HHhchhhhccccCcCCcccc--cccCCCCC
Confidence 33446688889988888754 68899976
No 84
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=77.58 E-value=1.6 Score=27.69 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=28.9
Q ss_pred CCCCCcccCccCCCcccccCC----------------------------c-EEeCCCCCeeeccc
Q 040426 4 PLGRDFLFCKFCGTMLRMESN----------------------------H-VVCSSCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~----------------------------~-~~C~~C~~~~~~~~ 39 (120)
.....++-||.|..=|.+.+. + ++|+.|+..+++.+
T Consensus 3 ~~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~d 67 (97)
T 2k5r_A 3 RKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIED 67 (97)
T ss_dssp TTTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEET
T ss_pred hHHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccC
Confidence 446788999999987765432 2 99999999999877
No 85
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=77.17 E-value=1 Score=27.09 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=21.1
Q ss_pred CcccCccCCCcccccCC--c-EEeCCCCCeeecc
Q 040426 8 DFLFCKFCGTMLRMESN--H-VVCSSCKFKKNVQ 38 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~~ 38 (120)
....||.||.. .++.. . +.|+.|++..---
T Consensus 26 ~ky~C~fCgk~-~vkR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 26 KKYKCPVCGFP-KLKRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cCccCCCCCCc-eeEEEEeEEEECCCCCcEEECC
Confidence 45689999964 33322 2 9999999986543
No 86
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=76.96 E-value=0.91 Score=33.11 Aligned_cols=27 Identities=19% Similarity=0.288 Sum_probs=17.9
Q ss_pred cCccCCCcccccC-------Cc-EEeCCCCCeeec
Q 040426 11 FCKFCGTMLRMES-------NH-VVCSSCKFKKNV 37 (120)
Q Consensus 11 FCp~CgnlL~~~~-------~~-~~C~~C~~~~~~ 37 (120)
-|.-|+..|+|.. +. +.|+.||-.--.
T Consensus 200 ~C~GC~~~lppq~~~~i~~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 200 ACGGCFIRLNDKIYTEVLTSGDMITCPYCGRILYA 234 (256)
T ss_dssp BCTTTCCBCCHHHHHHHHHSSSCEECTTTCCEEEC
T ss_pred ccCCCCeeeCHHHHHHHHCCCCEEECCCCCeeEEe
Confidence 5777887777652 23 888888875443
No 87
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=76.75 E-value=1 Score=28.30 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=21.4
Q ss_pred cccCccCCCcccccCC--c-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMESN--H-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~~~ 39 (120)
..+||.||.. .++.. . |.|+.|++..---.
T Consensus 36 ky~CpfCgk~-~vkR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 36 RYDCSFCGKK-TVKRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp CCCCSSSCSS-CCEEEETTEEECTTTCCEEECCS
T ss_pred CCcCCCCCCc-eeeecccceEEcCCCCCEEeCCc
Confidence 4589999966 34322 2 99999999875443
No 88
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=76.65 E-value=1.7 Score=23.94 Aligned_cols=26 Identities=23% Similarity=0.538 Sum_probs=21.7
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
+.||..|+.+|. .++.|+.|+|....
T Consensus 14 ~t~C~~C~k~i~---~G~kC~~Ck~~cH~ 39 (49)
T 1kbe_A 14 SQVCNVCQKSMI---FGVKCKHCRLKCHN 39 (49)
T ss_dssp SCCCSSSCCSSC---CEEEETTTTEEESS
T ss_pred CcCccccCceeE---CcCCCCCCCCccch
Confidence 489999999997 34999999998654
No 89
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=76.39 E-value=2 Score=30.92 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=21.2
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
..+.+||.||...+.++- ++| + +.|-+||+.
T Consensus 12 ~~~~~CP~Cg~~d~~~~~------~dg-~--~~C~~Cg~~ 42 (255)
T 1nui_A 12 LYHIPCDNCGSSDGNSLF------SDG-H--TFCYVCEKW 42 (255)
T ss_dssp EEEECCSSSCCSSCEEEE------TTS-C--EEETTTCCE
T ss_pred ecCCcCCCCCCCCCceEe------CCC-C--eecccCCCc
Confidence 347789999996553322 235 3 899999975
No 90
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=76.04 E-value=1.5 Score=26.46 Aligned_cols=28 Identities=32% Similarity=0.686 Sum_probs=22.3
Q ss_pred CcccCcc--CCCcccccCCc--EEeC-----CCCCee
Q 040426 8 DFLFCKF--CGTMLRMESNH--VVCS-----SCKFKK 35 (120)
Q Consensus 8 ~~~FCp~--CgnlL~~~~~~--~~C~-----~C~~~~ 35 (120)
.+.+||. |++.+....+. +.|. .|++.+
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~F 60 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAF 60 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCE
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCee
Confidence 4889998 99998776543 8897 898875
No 91
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=75.05 E-value=1.2 Score=34.03 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=19.3
Q ss_pred cccCccCCC---ccccc--CCcEEeCCCCCeee
Q 040426 9 FLFCKFCGT---MLRME--SNHVVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~Cgn---lL~~~--~~~~~C~~C~~~~~ 36 (120)
...||+||. -|... .+.++|..||.+-.
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 458999995 34332 23399999999864
No 92
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=74.89 E-value=0.85 Score=26.68 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=26.3
Q ss_pred cccccccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 73 TQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 73 ~t~~~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
|+.--.+++||.|++...+|-..| |+ -.|..||..
T Consensus 9 PnS~Fm~VkCp~C~~~q~VFSha~--------t~-V~C~~Cgt~ 43 (63)
T 3j20_W 9 PRSRFLRVKCIDCGNEQIVFSHPA--------TK-VRCLICGAT 43 (63)
T ss_dssp CSCCEEEEECSSSCCEEEEESSCS--------SC-EECSSSCCE
T ss_pred CCCcEEEEECCCCCCeeEEEecCC--------eE-EEccCcCCE
Confidence 454568999999999999986543 33 578888764
No 93
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=74.77 E-value=5.1 Score=24.61 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=26.3
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
+.-.||-|||..++--.+- |. ..+-.-.|..||-.+.
T Consensus 22 t~F~CPfCnh~~sV~vkid-k~---~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 22 TQFTCPFCNHEKSCDVKMD-RA---RNTGVISCTVCLEEFQ 58 (85)
T ss_dssp SCCCCTTTCCSSCEEEEEE-TT---TTEEEEEESSSCCEEE
T ss_pred CeEcCCCCCCCCeEEEEEE-cc---CCEEEEEcccCCCeEE
Confidence 3467999999988766653 21 2366678999997764
No 94
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=74.67 E-value=1.1 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.513 Sum_probs=20.3
Q ss_pred CCCcccCccCCCcccccCCcEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
...+..||.||.+-.+ ...|..|||-..
T Consensus 27 ~p~l~~c~~cG~~~~p---H~vc~~CG~Y~g 54 (60)
T 2zjr_Z 27 APNLTECPQCHGKKLS---HHICPNCGYYDG 54 (60)
T ss_dssp CCCCEECTTTCCEECT---TBCCTTTCBSSS
T ss_pred CCCceECCCCCCEeCC---ceEcCCCCcCCC
Confidence 3457789999988332 388999998643
No 95
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=74.26 E-value=0.45 Score=27.59 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=18.3
Q ss_pred CcccCccCCCcccccCCc--EEeCCCCC
Q 040426 8 DFLFCKFCGTMLRMESNH--VVCSSCKF 33 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~--~~C~~C~~ 33 (120)
..+||..||.-..++.++ |+|..|-.
T Consensus 32 k~r~CaRCGg~v~lr~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSLRSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEESSTTCEEEEEHHHHH
T ss_pred CCeeecccCCEeeecCCeEEEEehhhhh
Confidence 356888888777777665 77776643
No 96
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=74.09 E-value=0.86 Score=26.35 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=19.3
Q ss_pred CCcccCccCCCcccccCCcEEeCCCCCee
Q 040426 7 RDFLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
..+..||.||.+-.+= .+|..|||-.
T Consensus 28 p~l~~c~~cGe~~~~H---~vc~~CG~Y~ 53 (60)
T 3v2d_5 28 PTLVPCPECKAMKPPH---TVCPECGYYA 53 (60)
T ss_dssp CCCEECTTTCCEECTT---SCCTTTCEET
T ss_pred CceeECCCCCCeecce---EEcCCCCcCC
Confidence 4578999999864333 6799999754
No 97
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=73.87 E-value=0.64 Score=27.45 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=23.3
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
.+++||.|++...+|-..| |+ -.|..||..
T Consensus 6 m~VKCp~C~niq~VFShA~--------tv-V~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPS--------TI-VKCIICGRT 35 (66)
T ss_dssp EEEECTTTCCEEEEESSCS--------SC-EECSSSCCE
T ss_pred EEEECCCCCCceEEEecCc--------eE-EEcccCCCE
Confidence 5789999999999996643 33 678888764
No 98
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=73.69 E-value=1 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.440 Sum_probs=21.6
Q ss_pred cccCccCCCcccccCC--c-EEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMESN--H-VVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~-~~C~~C~~~~~~~~ 39 (120)
..+||.||.. .++.. . |.|+.|++..---.
T Consensus 36 ky~CpfCgk~-~vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 36 KYGCPFCGKV-AVKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp CEECTTTCCE-EEEEEETTEEEETTTTEEEECCS
T ss_pred CCCCCCCCCc-eeeecCcceEEcCCCCCEEeCCc
Confidence 4589999976 44432 2 99999999875443
No 99
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=73.09 E-value=1.4 Score=24.28 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=20.6
Q ss_pred cccCccCCCcccccCCc----EEeCCCCCeee
Q 040426 9 FLFCKFCGTMLRMESNH----VVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~----~~C~~C~~~~~ 36 (120)
+--|-.||.-+..++-. +.|+.|||..-
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 34588999888776643 99999999654
No 100
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=72.98 E-value=2.7 Score=32.13 Aligned_cols=30 Identities=23% Similarity=0.466 Sum_probs=23.8
Q ss_pred CCcccCccCCCccc-ccCCcEEeCCCCCeee
Q 040426 7 RDFLFCKFCGTMLR-MESNHVVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~CgnlL~-~~~~~~~C~~C~~~~~ 36 (120)
....||..|+.+|. .-..++.|+.||+...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 45679999999996 3444599999999764
No 101
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.78 E-value=2.2 Score=31.45 Aligned_cols=34 Identities=21% Similarity=0.507 Sum_probs=22.4
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCcee
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w 117 (120)
.+.-||.||+....=|..-...|| |-|..|+..+
T Consensus 33 ~n~yCPnCG~~~l~~f~nN~PVaD------F~C~~C~Eey 66 (257)
T 4esj_A 33 RQSYCPNCGNNPLNHFENNRPVAD------FYCNHCSEEF 66 (257)
T ss_dssp HHCCCTTTCCSSCEEC----CCCE------EECTTTCCEE
T ss_pred HCCcCCCCCChhhhhccCCCcccc------cccCCcchhh
Confidence 356799999987755555556665 7799998655
No 102
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=70.67 E-value=2.2 Score=30.70 Aligned_cols=27 Identities=26% Similarity=0.577 Sum_probs=18.9
Q ss_pred cccCccCCC----cccccCCcEEeCCCCCeee
Q 040426 9 FLFCKFCGT----MLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~Cgn----lL~~~~~~~~C~~C~~~~~ 36 (120)
-.-||.||. -++. ...+.|.+||+...
T Consensus 14 ~~~CP~Cg~~d~~~~~~-dg~~~C~~Cg~~~~ 44 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLFS-DGHTFCYVCEKWTA 44 (255)
T ss_dssp EECCSSSCCSSCEEEET-TSCEEETTTCCEEC
T ss_pred CCcCCCCCCCCCceEeC-CCCeecccCCCcCC
Confidence 347999988 3342 22399999998743
No 103
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=69.79 E-value=2.5 Score=18.47 Aligned_cols=11 Identities=27% Similarity=0.920 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..++
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 78888888765
No 104
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=69.36 E-value=0.8 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.700 Sum_probs=20.7
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
+.||.|++++..+. -|+-..|-.|..||++
T Consensus 104 VlC~~C~sPdT~l~-------k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILK-------KEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSC-------SSCSTTTSSCCC----
T ss_pred eECCCCCCcCcEEE-------EeCCeEEEEecCCCCC
Confidence 78999999987442 2567788999999975
No 105
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.01 E-value=5.6 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.495 Sum_probs=20.6
Q ss_pred CCCCCCcccCccCCCcccccCCcEEeCCCCCee
Q 040426 3 DPLGRDFLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 3 ~~~~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
.+....+.||..|+. . ..|.|+.|+...
T Consensus 6 ~~~~~~~~~C~vC~~--~---~kY~CPrC~~~y 33 (56)
T 2yqq_A 6 SGLKCSTVVCVICLE--K---PKYRCPACRVPY 33 (56)
T ss_dssp CCCCCCCCCCTTTCS--C---CSEECTTTCCEE
T ss_pred cccCCCCCccCcCcC--C---CeeeCCCCCCCe
Confidence 345556779999997 2 349999999754
No 106
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=68.88 E-value=2.4 Score=29.43 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=19.7
Q ss_pred cCccCCCcccccCCc-EEeCCCCCe
Q 040426 11 FCKFCGTMLRMESNH-VVCSSCKFK 34 (120)
Q Consensus 11 FCp~CgnlL~~~~~~-~~C~~C~~~ 34 (120)
=||.|+.-+....++ |.|..|+..
T Consensus 44 ACp~CnKKV~~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSVLKYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCEEEETTTEEEETTTTEE
T ss_pred hchhhCCEeeeCCCCeEECCCCCCC
Confidence 599999998844444 999999998
No 107
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=68.45 E-value=2.7 Score=29.64 Aligned_cols=29 Identities=17% Similarity=0.512 Sum_probs=21.5
Q ss_pred cccCccCCC--cccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGT--MLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~Cgn--lL~~~~~~~~C~~C~~~~~~ 37 (120)
-..||.||- +|-.-.+++.|-.|+|++-.
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCCccCCceeEEEe
Confidence 368999994 44433456999999999853
No 108
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=68.11 E-value=2.2 Score=26.20 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=25.8
Q ss_pred cccccccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 73 TQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 73 ~t~~~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
|+.--.+++||.|++...+|-..|+ + -.|..||..
T Consensus 28 PnS~Fm~VkCp~C~~~q~VFSha~t--------~-V~C~~Cg~~ 62 (82)
T 3u5c_b 28 PRSYFLDVKCPGCLNITTVFSHAQT--------A-VTCESCSTI 62 (82)
T ss_dssp CCCCEEEEECTTSCSCEEEESBCSS--------C-CCCSSSCCC
T ss_pred CCCcEEEEECCCCCCeeEEEecCCe--------E-EEccccCCE
Confidence 5555689999999999999976543 2 457777653
No 109
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=67.08 E-value=2.1 Score=24.49 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=23.7
Q ss_pred CCCCCcccCccCCCcccccCC--cEEeCC--CCCee
Q 040426 4 PLGRDFLFCKFCGTMLRMESN--HVVCSS--CKFKK 35 (120)
Q Consensus 4 ~~~~~~~FCp~CgnlL~~~~~--~~~C~~--C~~~~ 35 (120)
|+....+=||.|+.++.-.+. .+.|+. |++..
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~F 36 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEF 36 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEE
Confidence 455667889999988776553 289998 88764
No 110
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=66.92 E-value=2.6 Score=32.02 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=20.5
Q ss_pred CcccCccCCCc---ccccCC--cEEeCCCCCeee
Q 040426 8 DFLFCKFCGTM---LRMESN--HVVCSSCKFKKN 36 (120)
Q Consensus 8 ~~~FCp~Cgnl---L~~~~~--~~~C~~C~~~~~ 36 (120)
....||+||.- |..... .++|..||.+-.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 35589999873 333322 399999999864
No 111
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=66.19 E-value=3 Score=18.24 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 78888888765
No 112
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=65.92 E-value=2.7 Score=18.49 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=8.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 78888888765
No 113
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=65.64 E-value=4.6 Score=31.70 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=25.0
Q ss_pred cccccccccCCCceEEEEeecccC--CCCceEEEEcCCCCceecc
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSA--DEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSA--DE~~T~fY~C~~C~~~w~~ 119 (120)
.+...||.||.+.. ...+-++-- -|=.-.-|.|..|||+..+
T Consensus 10 ~~~s~Cp~C~~~g~-t~~~~~~IP~F~eVii~Sf~C~~CGyrn~e 53 (404)
T 2qkd_A 10 SIESLCMNCYRNGT-TRLLLTKIPFFREIIVSSFSCEHCGWNNTE 53 (404)
T ss_dssp -CEEECTTTSSEEE-EEEEEEEETTTEEEEEEEEECTTTCCEEEE
T ss_pred CccccCCCCCCCce-EEEEEEcCCCCceEEEEEEECCCCCCchhe
Confidence 34567999996654 222222221 2223456899999998764
No 114
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=62.38 E-value=4.4 Score=17.66 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 1rik_A 3 FACPECPKRFM 13 (29)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 77888887764
No 115
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=62.37 E-value=3.9 Score=17.84 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 4 ~~C~~C~~~f~ 14 (30)
T 2m0d_A 4 YQCDYCGRSFS 14 (30)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 78888888765
No 116
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=60.66 E-value=4.5 Score=17.51 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 78888887764
No 117
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=64.20 E-value=1.9 Score=18.70 Aligned_cols=11 Identities=55% Similarity=1.443 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 77888887664
No 118
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=59.66 E-value=4.6 Score=20.18 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=15.4
Q ss_pred cCccCCCcccccCCcEEeCCCCCee
Q 040426 11 FCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 11 FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
-||.||++-.... ..|..|+...
T Consensus 8 ~C~~C~~~Nfa~R--~~C~~C~~pk 30 (33)
T 2k1p_A 8 QCKTCSNVNWARR--SECNMCNTPK 30 (33)
T ss_dssp BCSSSCCBCCTTC--SBCSSSCCBT
T ss_pred ccCCCCCcccccc--ccccccCCcC
Confidence 5888888866654 4667776654
No 119
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=58.97 E-value=0.86 Score=24.95 Aligned_cols=34 Identities=26% Similarity=0.620 Sum_probs=24.7
Q ss_pred cccccccCCCceEEEEeecccCCCCceEEEEcCCCCceecc
Q 040426 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQE 119 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~~ 119 (120)
...|..||-.+- -+-|+..+|. +.|-.||-.|+.
T Consensus 4 ~~~C~~C~tt~T----p~WR~gp~G~---~LCNaCGl~~k~ 37 (46)
T 1gnf_A 4 ARECVNCGATAT----PLWRRDRTGH---YLCNACGLYHKM 37 (46)
T ss_dssp SCCCTTTCCCCC----SSCBCCTTCC---CBCSHHHHHHHH
T ss_pred CCCCCCcCCCCC----CcCccCCCCC---ccchHHHHHHHH
Confidence 456899998763 4557788886 578888887753
No 120
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=58.63 E-value=5.6 Score=31.26 Aligned_cols=31 Identities=19% Similarity=0.531 Sum_probs=23.8
Q ss_pred CCCcccCccCCCcccccC-CcEEeCCCCCeee
Q 040426 6 GRDFLFCKFCGTMLRMES-NHVVCSSCKFKKN 36 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~-~~~~C~~C~~~~~ 36 (120)
...+.||..|+++|.-.. ..+.|..|++...
T Consensus 217 ~~~pt~C~~C~~~l~g~~~qg~~C~~C~~~~H 248 (463)
T 3cxl_A 217 FRGPHWCEYCANFMWGLIAQGVKCADCGLNVH 248 (463)
T ss_dssp CSSCCBCTTTCCBCCSSSCCEEEETTTCCEEC
T ss_pred cCCCCcchhhhhhhhhHHhcCeeccccCcccc
Confidence 456789999999985432 3499999999753
No 121
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.62 E-value=5.2 Score=19.06 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=9.3
Q ss_pred EEEcCCCCceec
Q 040426 107 YYICPRCGHRCQ 118 (120)
Q Consensus 107 fY~C~~C~~~w~ 118 (120)
-|.|..||..|.
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elm_A 9 LYYCSQCHYSSI 20 (37)
T ss_dssp EEECSSSSCEEE
T ss_pred CeECCCCCcccC
Confidence 388888888775
No 122
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.10 E-value=6.3 Score=18.52 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elp_A 10 MKCPYCDFYFM 20 (37)
T ss_dssp EECSSSSCEEC
T ss_pred eECCCCChhhc
Confidence 78888887765
No 123
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=55.71 E-value=2.7 Score=26.77 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=11.9
Q ss_pred CcccCccCCCccccc
Q 040426 8 DFLFCKFCGTMLRME 22 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~ 22 (120)
.-.||+.||+.|+..
T Consensus 66 ~r~FC~~CGs~l~~~ 80 (118)
T 3fac_A 66 KHWFCRTCGIYTHHQ 80 (118)
T ss_dssp EEEEETTTCCEEEEE
T ss_pred eeEECCCCCccccCc
Confidence 346999999988754
No 124
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=55.67 E-value=5.7 Score=18.35 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=8.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..++
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 88888888775
No 125
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.59 E-value=5.8 Score=18.52 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=8.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 88888888775
No 126
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=55.56 E-value=2.9 Score=18.06 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=7.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 2 ~~C~~C~k~f~ 12 (27)
T 1znf_A 2 YKCGLCERSFV 12 (27)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCCCCCcCC
Confidence 56777776654
No 127
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.43 E-value=5.7 Score=18.53 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elv_A 10 YDCHICERKFK 20 (36)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 88888887765
No 128
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=55.32 E-value=5.8 Score=18.19 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 2elx_A 8 YVCALCLKKFV 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCcchhC
Confidence 88888888765
No 129
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=53.50 E-value=6.7 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=20.5
Q ss_pred cCcc--CCCcccccCCc-EEeCCCCCeee
Q 040426 11 FCKF--CGTMLRMESNH-VVCSSCKFKKN 36 (120)
Q Consensus 11 FCp~--CgnlL~~~~~~-~~C~~C~~~~~ 36 (120)
-||. |+.-+....++ |.|..|+...+
T Consensus 45 aC~~~~CnKKv~~~~~g~~~CekC~~~~~ 73 (181)
T 1l1o_C 45 ACPTQDCNKKVIDQQNGLYRCEKCDTEFP 73 (181)
T ss_dssp BCCSTTCCCBCEEETTTEEEETTTTEEES
T ss_pred CCCchhcCCccccCCCCeEECCCCCCcCC
Confidence 5999 99988765554 99999997643
No 130
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=53.47 E-value=7.9 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.611 Sum_probs=20.5
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCee
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
.-..||.||+--+-. +...|..|||..
T Consensus 15 tH~lCrRCG~~sfH~-qK~~CgkCGYpa 41 (97)
T 2zkr_2 15 THTLCRRCGSKAYHL-QKSTCGKCGYPA 41 (97)
T ss_dssp CEECCTTTCSSCEET-TSCCBTTTCTTT
T ss_pred CCCcCCCCCCccCcC-ccccCcccCCch
Confidence 345899999986633 349999999954
No 131
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=53.13 E-value=16 Score=26.77 Aligned_cols=31 Identities=16% Similarity=0.465 Sum_probs=21.7
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
...+||.||..-..-.+ +.-..|-|..|..+
T Consensus 241 ~G~pC~~CG~~I~~~~~--------~gR~t~~CP~CQ~~ 271 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKIKV--------AGRGTHFCPVCQQK 271 (271)
T ss_dssp TTSBCTTTCCBCEEEEE--------TTEEEEECTTTSCC
T ss_pred CCCCCCCCCCEeeEEEE--------CCCceEECCCCCCC
Confidence 45789999998554333 34556889999753
No 132
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.86 E-value=7.2 Score=18.13 Aligned_cols=11 Identities=18% Similarity=0.754 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2els_A 10 FTCEYCNKVFK 20 (36)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCceeC
Confidence 78888887764
No 133
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.65 E-value=7.3 Score=18.00 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elt_A 10 YKCPQCSYASA 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred CCCCCCCcccC
Confidence 78888887764
No 134
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=51.42 E-value=7.5 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=19.2
Q ss_pred cCccCCCcccccCCcEEeCCCCCe
Q 040426 11 FCKFCGTMLRMESNHVVCSSCKFK 34 (120)
Q Consensus 11 FCp~CgnlL~~~~~~~~C~~C~~~ 34 (120)
-||.|+.-|......+.|.+|...
T Consensus 4 ~Cp~C~~~~~~~~~~~~C~~~~~~ 27 (269)
T 1p91_A 4 SCPLCHQPLSREKNSYICPQRHQF 27 (269)
T ss_dssp BCTTTCCBCEEETTEEECTTCCEE
T ss_pred cCCCCCccceeCCCEEECCCCCcC
Confidence 399999988776656999998654
No 135
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=51.05 E-value=3.6 Score=17.94 Aligned_cols=11 Identities=18% Similarity=0.806 Sum_probs=7.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 66777777654
No 136
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=50.94 E-value=14 Score=28.30 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=23.9
Q ss_pred cccccccCCCc--eEEE-EeecccCCC---C--ceEEEEcCCCCce
Q 040426 79 KRACEKCQNPE--MYYS-TRQTRSADE---G--QTTYYICPRCGHR 116 (120)
Q Consensus 79 ~~~CpkCg~~e--a~y~-~~Q~RSADE---~--~T~fY~C~~C~~~ 116 (120)
.-+|+.||.+. ..+. -.....++| | -.-.|.|..||+.
T Consensus 119 ~p~C~~Cg~~~~~~~~~~g~~~p~~~E~~~ga~~vE~y~C~~C~~~ 164 (335)
T 1x3z_A 119 KPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNI 164 (335)
T ss_dssp SCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCE
T ss_pred CCCccccCCCccccccccCCCCCChhhhccCCceEEEeecCCCCcc
Confidence 45799999985 3442 333334444 3 2445999999984
No 137
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=50.42 E-value=12 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=19.9
Q ss_pred cccccccCC--CceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 79 KRACEKCQN--PEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 79 ~~~CpkCg~--~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
...||.||. +..++ - ..+=.++|..||..-.
T Consensus 21 ~~~Cp~C~~~~~~lv~-D--------~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVE-R--------FSEGDVVCALCGLVLS 53 (345)
T ss_dssp -CCCSSCCCSSCCEEE-E--------GGGTEEEETTTCBEEE
T ss_pred CCcCCCCCCCCCceeE-E--------CCCCcEEeCCCCCCcc
Confidence 447999997 34433 2 2344588999997643
No 138
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=50.17 E-value=18 Score=22.95 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=6.7
Q ss_pred ccccccccCCCce
Q 040426 78 VKRACEKCQNPEM 90 (120)
Q Consensus 78 ~~~~CpkCg~~ea 90 (120)
-++.|++|+|--|
T Consensus 56 y~H~C~nC~HvIA 68 (106)
T 2jox_A 56 YDHLCKNCHHVIA 68 (106)
T ss_dssp EEEEETTTCCEEE
T ss_pred EEEecCCCceEee
Confidence 3455566655433
No 139
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=49.84 E-value=3 Score=25.81 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=24.0
Q ss_pred cccccccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 73 TQLSKVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 73 ~t~~~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
|+.--.+++||.|++...+|-..|+ .-.|..||..
T Consensus 30 PnS~Fm~VkCp~C~~~~~VFShA~t---------~V~C~~Cgtv 64 (86)
T 3iz6_X 30 PNSFFMDVKCQGCFNITTVFSHSQT---------VVVCPGCQTV 64 (86)
T ss_dssp ---CEEEEECTTTCCEEEEETTCSS---------CCCCSSSCCC
T ss_pred CCCcEeEEECCCCCCeeEEEecCCc---------EEEccCCCCE
Confidence 4444678999999999999965442 2467777753
No 140
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=48.65 E-value=5.3 Score=20.05 Aligned_cols=11 Identities=27% Similarity=0.926 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|+
T Consensus 9 ~~C~~CgK~F~ 19 (36)
T 1fv5_A 9 FMCLPCGIAFS 19 (36)
T ss_dssp CEETTTTEECS
T ss_pred eECCCCCCccC
Confidence 78888887765
No 141
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=48.53 E-value=4.3 Score=17.51 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 56666666553
No 142
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=48.49 E-value=4.2 Score=17.73 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1klr_A 3 YQCQYCEFRSA 13 (30)
T ss_dssp CCCSSSSCCCS
T ss_pred ccCCCCCCccC
Confidence 56666766554
No 143
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=48.31 E-value=4.1 Score=17.95 Aligned_cols=11 Identities=27% Similarity=0.782 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 56666766554
No 144
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=48.26 E-value=8.7 Score=25.56 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=20.1
Q ss_pred cccCccCCCcccccCCcEEeCCCCCee
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
..-|+.||....|+. ..|..|+...
T Consensus 47 ~~rC~~CG~~~~PPr--~~Cp~C~s~~ 71 (145)
T 3irb_A 47 GSKCSKCGRIFVPAR--SYCEHCFVKI 71 (145)
T ss_dssp EEECTTTCCEEESCC--SEETTTTEEC
T ss_pred EEEeCCCCcEEcCch--hhCcCCCCCc
Confidence 347999999999885 4799998753
No 145
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=47.86 E-value=13 Score=29.95 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=23.0
Q ss_pred CCcccCccCCCcccccC-CcEEeCCCCCeee
Q 040426 7 RDFLFCKFCGTMLRMES-NHVVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~-~~~~C~~C~~~~~ 36 (120)
....||..|+.+|.--. .++.|+.|++...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vH 557 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQGYRCHRCRASAH 557 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCEEEETTTCCEEC
T ss_pred CCCcccccccccccccccCCcCCCCCCCccc
Confidence 45779999999985432 3499999998754
No 146
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=47.23 E-value=9 Score=19.60 Aligned_cols=11 Identities=45% Similarity=1.204 Sum_probs=9.0
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 8 ~~C~~C~k~F~ 18 (48)
T 3iuf_A 8 YACDICGKRYK 18 (48)
T ss_dssp EECTTTCCEES
T ss_pred EECCCcCcccC
Confidence 88888988775
No 147
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=46.90 E-value=9.5 Score=18.16 Aligned_cols=11 Identities=27% Similarity=0.848 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 7 ~~C~~C~k~f~ 17 (39)
T 1njq_A 7 YTCSFCKREFR 17 (39)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 78888887764
No 148
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=46.88 E-value=10 Score=31.01 Aligned_cols=29 Identities=24% Similarity=0.622 Sum_probs=22.3
Q ss_pred CCcccCccCCCcccccC-CcEEeCCCCCee
Q 040426 7 RDFLFCKFCGTMLRMES-NHVVCSSCKFKK 35 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~-~~~~C~~C~~~~ 35 (120)
....||..|+.+|+--. .++.|..|++..
T Consensus 111 ~~~~~C~~C~~~l~g~~~qg~~C~~C~~~~ 140 (674)
T 3pfq_A 111 SSPTFCDHCGSLLYGLIHQGMKCDTCMMNV 140 (674)
T ss_dssp SSCCCCSSSCSCCBBSSSCEECCSSSCCCB
T ss_pred CCCCCCCccccccchhhcCccccccCCcch
Confidence 45679999999987332 349999999864
No 149
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=46.82 E-value=9.3 Score=18.39 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2epc_A 12 YLCGQCGKSFT 22 (42)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 88888887765
No 150
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=46.62 E-value=8.9 Score=27.12 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=22.6
Q ss_pred cccCccCCCcccccC-CcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMES-NHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~-~~~~C~~C~~~~~~ 37 (120)
...|+. |+.|.+.. +.+.|..||..+..
T Consensus 169 ~A~c~~-g~~m~~~~~~~m~cp~cg~~E~R 197 (209)
T 2nn6_I 169 VAHSES-GIQMVPISWCEMQCPKTHTKEFR 197 (209)
T ss_dssp CCBCSS-SCBCEEEETTEEECTTTTCCBCC
T ss_pred EEEcCC-CCEEEEccCCEEECCCCCCEEee
Confidence 347988 88888876 44999999998754
No 151
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=46.23 E-value=8.7 Score=22.97 Aligned_cols=31 Identities=16% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcccCccCCCcccccCC-----------c-EEeCCCCCeeecc
Q 040426 8 DFLFCKFCGTMLRMESN-----------H-VVCSSCKFKKNVQ 38 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~-----------~-~~C~~C~~~~~~~ 38 (120)
..--|+.||....-... . |.|..|+..+...
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 34579999987654431 2 9999999887543
No 152
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=46.17 E-value=12 Score=26.51 Aligned_cols=10 Identities=40% Similarity=1.301 Sum_probs=8.7
Q ss_pred EEEcCCCCce
Q 040426 107 YYICPRCGHR 116 (120)
Q Consensus 107 fY~C~~C~~~ 116 (120)
||+|.+||..
T Consensus 154 FYKCe~CgKY 163 (226)
T 2czr_A 154 FYKCEECGKY 163 (226)
T ss_dssp EEECTTTCCE
T ss_pred EEehhhcCce
Confidence 8999999864
No 153
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=46.13 E-value=7.4 Score=23.96 Aligned_cols=34 Identities=21% Similarity=0.550 Sum_probs=22.7
Q ss_pred CCcccCccCCCccc----------ccC------Cc-----------EEeCCCCCeeecccc
Q 040426 7 RDFLFCKFCGTMLR----------MES------NH-----------VVCSSCKFKKNVQDV 40 (120)
Q Consensus 7 ~~~~FCp~CgnlL~----------~~~------~~-----------~~C~~C~~~~~~~~~ 40 (120)
.-|.-||.||.-|. ... |+ +.|+.||-...-...
T Consensus 6 ~~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~L 66 (95)
T 2k5c_A 6 HHMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTL 66 (95)
T ss_dssp --CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSS
T ss_pred cccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccC
Confidence 34677999998664 221 21 999999988765543
No 154
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.00 E-value=9.9 Score=18.33 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2en2_A 12 YKCETCGARFV 22 (42)
T ss_dssp EECTTTCCEES
T ss_pred EeCCCcChhhC
Confidence 88888887765
No 155
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=51.46 E-value=4.4 Score=17.78 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=7.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2lvt_A 3 CQCVMCGKAFT 13 (29)
Confidence 67888877654
No 156
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.07 E-value=10 Score=18.67 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (44)
T 2epv_A 13 YECNECGKAFI 23 (44)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 78888887764
No 157
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=44.58 E-value=5.2 Score=18.78 Aligned_cols=11 Identities=27% Similarity=1.011 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 12 ~~C~~C~k~f~ 22 (37)
T 1p7a_A 12 FQCPDCDRSFS 22 (37)
T ss_dssp BCCTTTCCCBS
T ss_pred ccCCCCCcccC
Confidence 66666666553
No 158
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.14 E-value=11 Score=18.43 Aligned_cols=11 Identities=27% Similarity=0.881 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2emb_A 13 YECSKCQATFN 23 (44)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCCccC
Confidence 78888887764
No 159
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.13 E-value=11 Score=18.68 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emi_A 13 YECSECGKAFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred CCCCCCCcccC
Confidence 88888887765
No 160
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=50.07 E-value=4.8 Score=17.64 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=7.1
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 66777776553
No 161
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=43.98 E-value=4.6 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.610 Sum_probs=24.3
Q ss_pred cccCccCCCcccccC---CcEEeCCCCCeeeccc
Q 040426 9 FLFCKFCGTMLRMES---NHVVCSSCKFKKNVQD 39 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~---~~~~C~~C~~~~~~~~ 39 (120)
+.=||.|+.+||.++ ...+|..|+|......
T Consensus 24 ~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~~a 57 (304)
T 2f9y_B 24 WTKCDSCGQVLYRAELERNLEVCPKCDHHMRMTA 57 (304)
T ss_dssp EECCTTTCCCEETTHHHHTTTBCTTTCCBCCCCH
T ss_pred HHhhhhccchhhHHHHHHHhCCCCCCCCCCCCCH
Confidence 456999999999884 2399999999865433
No 162
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.95 E-value=12 Score=18.22 Aligned_cols=11 Identities=18% Similarity=0.818 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2yu5_A 13 FKCSKCDRVFT 23 (44)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCchhC
Confidence 77888887765
No 163
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=43.89 E-value=7.3 Score=20.38 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=9.4
Q ss_pred EEeCCCCCeeeccc
Q 040426 26 VVCSSCKFKKNVQD 39 (120)
Q Consensus 26 ~~C~~C~~~~~~~~ 39 (120)
+.|..||...+..+
T Consensus 10 ~~C~~C~~~i~~~~ 23 (39)
T 2i5o_A 10 VPCEKCGSLVPVWD 23 (39)
T ss_dssp EECTTTCCEEEGGG
T ss_pred cccccccCcCCccc
Confidence 77777777766543
No 164
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=43.81 E-value=11 Score=18.14 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2el5_A 11 YECSECGKAFN 21 (42)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCcChhhC
Confidence 78888887765
No 165
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=43.65 E-value=27 Score=25.58 Aligned_cols=30 Identities=23% Similarity=0.586 Sum_probs=20.5
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCC
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~ 114 (120)
+...+||.||..-..-.+ +.-.-|-|+.|.
T Consensus 243 R~g~pC~~CG~~I~~~~~--------~gR~t~~CP~CQ 272 (273)
T 3u6p_A 243 RQGNPCKRCGTPIEKTVV--------AGRGTHYCPRCQ 272 (273)
T ss_dssp CTTSBCTTTCCBCEEEEE--------TTEEEEECTTTC
T ss_pred CCcCCCCCCCCeEEEEEE--------CCCCeEECCCCC
Confidence 345799999997554333 345558899996
No 166
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=43.39 E-value=28 Score=25.44 Aligned_cols=29 Identities=21% Similarity=0.575 Sum_probs=20.4
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCC
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~ 114 (120)
...+||.||..-..-.+ +.-..|-|..|.
T Consensus 239 ~g~pC~~CG~~I~~~~~--------~gR~t~~CP~CQ 267 (268)
T 1k82_A 239 KGEPCRVCGTPIVATKH--------AQRATFYCRQCQ 267 (268)
T ss_dssp TTSBCTTTCCBCEEEEE--------TTEEEEECTTTC
T ss_pred CCCCCCCCCCEeeEEEE--------CCCceEECCCCC
Confidence 45789999998554333 345558899996
No 167
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.21 E-value=12 Score=18.22 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2eof_A 13 YECNECQKAFN 23 (44)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 88888887765
No 168
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.00 E-value=11 Score=18.62 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2ytp_A 13 YECSECGKAFA 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCcCCcccC
Confidence 78888887764
No 169
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=42.96 E-value=12 Score=18.59 Aligned_cols=11 Identities=27% Similarity=0.984 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emj_A 13 FECAECGKSFS 23 (46)
T ss_dssp EECSSSSCEES
T ss_pred EECCCCCcccC
Confidence 78888887764
No 170
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.84 E-value=7 Score=18.26 Aligned_cols=11 Identities=36% Similarity=1.017 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 10 ~~C~~C~k~f~ 20 (37)
T 2elo_A 10 YSCPVCEKSFS 20 (37)
T ss_dssp CEETTTTEECS
T ss_pred cCCCCCCCccC
Confidence 77888887664
No 171
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.76 E-value=13 Score=18.40 Aligned_cols=11 Identities=18% Similarity=0.812 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoy_A 13 FKCNKCEKTFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECcCCCCcCC
Confidence 78888887765
No 172
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.57 E-value=5.8 Score=18.40 Aligned_cols=11 Identities=27% Similarity=0.963 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elr_A 10 HLCDMCGKKFK 20 (36)
T ss_dssp CBCTTTCCBCS
T ss_pred eecCcCCCCcC
Confidence 66666666553
No 173
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.42 E-value=12 Score=18.56 Aligned_cols=11 Identities=36% Similarity=1.005 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em4_A 13 YECIECGKAFK 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCCCccC
Confidence 78888887764
No 174
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.06 E-value=12 Score=18.41 Aligned_cols=11 Identities=36% Similarity=1.074 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eow_A 13 YKCNECGKAFR 23 (46)
T ss_dssp EECTTSCCEES
T ss_pred eeccccCChhc
Confidence 88888887765
No 175
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=41.89 E-value=2.6 Score=22.58 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=21.5
Q ss_pred cccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 81 ~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
.|-.|+-.+- -+-|+..+|. +.|-.||-.|+
T Consensus 3 ~C~~C~tt~T----p~WR~gp~G~---~LCNaCGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQTT----PLWRRNPEGQ---PLCNACGLFLK 33 (43)
T ss_dssp CCSSSCCCCC----SCCEECTTSC---EECHHHHHHHH
T ss_pred cCCccCCCCC----CccccCCCCC---cccHHHHHHHH
Confidence 4778887653 3446777776 67888887765
No 176
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.66 E-value=14 Score=20.36 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=6.3
Q ss_pred CCCCCcccCccCCC
Q 040426 4 PLGRDFLFCKFCGT 17 (120)
Q Consensus 4 ~~~~~~~FCp~Cgn 17 (120)
|...+-..||.||.
T Consensus 7 ~~~~~~~~CPrCn~ 20 (49)
T 2e72_A 7 GQDGGRKICPRCNA 20 (49)
T ss_dssp SCCSSCCCCTTTCC
T ss_pred cccCCceeCCcccc
Confidence 33344444555553
No 177
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.59 E-value=11 Score=18.67 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=8.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoz_A 13 YSCNVCGKAFV 23 (46)
T ss_dssp EEETTTTEEES
T ss_pred eECcccChhhC
Confidence 88888887765
No 178
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.56 E-value=12 Score=18.37 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yrj_A 13 YRCGECGKAFA 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 78888887765
No 179
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.36 E-value=12 Score=18.45 Aligned_cols=11 Identities=36% Similarity=1.047 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yto_A 13 YKCSDCGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECcccCCccC
Confidence 88888887765
No 180
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=41.32 E-value=31 Score=25.03 Aligned_cols=30 Identities=23% Similarity=0.641 Sum_probs=20.6
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCC
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~ 114 (120)
....+||.||..-..-.+ +.-.-|-|+.|.
T Consensus 232 R~g~pC~~CG~~I~~~~~--------~gR~t~~CP~CQ 261 (262)
T 1k3x_A 232 RDGEPCERCGSIIEKTTL--------SSRPFYWCPGCQ 261 (262)
T ss_dssp CTTSBCTTTCCBCEEEEE--------TTEEEEECTTTC
T ss_pred CCcCCCCCCCCEeEEEEE--------CCCCeEECCCCC
Confidence 345689999998554333 345557899996
No 181
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.24 E-value=6 Score=20.75 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=7.3
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
+.|..|+....
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 77777776553
No 182
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=41.19 E-value=13 Score=15.85 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=8.6
Q ss_pred EEcC--CCCceec
Q 040426 108 YICP--RCGHRCQ 118 (120)
Q Consensus 108 Y~C~--~C~~~w~ 118 (120)
|.|. .||..+.
T Consensus 3 ~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 3 YVCHFENCGRSFN 15 (29)
T ss_dssp EEECSTTTCEEES
T ss_pred CCCcCCcCcCccC
Confidence 7888 8888765
No 183
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.15 E-value=14 Score=18.18 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yu8_A 13 YKCNECGKVFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCcCCchhC
Confidence 77888877765
No 184
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=40.75 E-value=19 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.333 Sum_probs=20.2
Q ss_pred ccCccCCCcccccCCcEEeCCCCCeee
Q 040426 10 LFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
.-|..|+.-..+-.-+..||.||...=
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C 38 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFC 38 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CcccCCCCccCCccccccCCCCCEEEc
Confidence 479999986655444499999998764
No 185
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.72 E-value=14 Score=18.08 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2epw_A 13 CKCTECGKAFC 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCCccC
Confidence 77888887764
No 186
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.57 E-value=13 Score=18.28 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|+
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emh_A 13 YICTVCGKAFT 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred cCCCCCCchhC
Confidence 88888887765
No 187
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.53 E-value=13 Score=17.75 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 11 ~~C~~C~k~f~ 21 (41)
T 2ept_A 11 YECQECGKSFR 21 (41)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCCcC
Confidence 77888887764
No 188
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.51 E-value=13 Score=18.26 Aligned_cols=11 Identities=45% Similarity=1.168 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yts_A 13 YICNECGKSFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECCCCChhhC
Confidence 78888887764
No 189
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=40.47 E-value=6.5 Score=27.43 Aligned_cols=14 Identities=21% Similarity=0.384 Sum_probs=11.4
Q ss_pred cccCccCCCccccc
Q 040426 9 FLFCKFCGTMLRME 22 (120)
Q Consensus 9 ~~FCp~CgnlL~~~ 22 (120)
-.||+.||+-|+..
T Consensus 98 r~FC~~CGs~l~~~ 111 (196)
T 1x6m_A 98 RHRCRDCGVHMYGR 111 (196)
T ss_dssp EEEETTTCCEEEEE
T ss_pred eEECCCCCCcCCcc
Confidence 46999999998654
No 190
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.30 E-value=13 Score=18.29 Aligned_cols=11 Identities=36% Similarity=0.972 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em7_A 13 YKCEECGKGFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCccchhC
Confidence 78888887764
No 191
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.22 E-value=14 Score=18.19 Aligned_cols=11 Identities=36% Similarity=0.963 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eor_A 13 YNCEECGKAFI 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCCcC
Confidence 78888887764
No 192
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.15 E-value=13 Score=18.28 Aligned_cols=11 Identities=36% Similarity=1.011 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|+
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emy_A 13 YECHECGKAFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCCcccC
Confidence 78888887765
No 193
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=40.03 E-value=9 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.733 Sum_probs=18.1
Q ss_pred CCcccCccCCCcccccCCc---EEeCCCCCe
Q 040426 7 RDFLFCKFCGTMLRMESNH---VVCSSCKFK 34 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~~---~~C~~C~~~ 34 (120)
..+--|+.|||++..-.+. ++| ||-.
T Consensus 5 ~~fYkC~~CGnivev~~~g~~~l~C--CG~~ 33 (126)
T 1vzi_A 5 LQVYKCEVCGNIVEVLNGGIGELVC--CNQD 33 (126)
T ss_dssp TCEEECTTTCCEEEEEECCSSCEEE--TTEE
T ss_pred CcEEEcCCCCeEEEEEcCCCcceec--CCcc
Confidence 3456799999999754333 777 7754
No 194
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.64 E-value=14 Score=18.22 Aligned_cols=11 Identities=45% Similarity=1.250 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytj_A 13 YICAECGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCChhhC
Confidence 78888887765
No 195
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.63 E-value=14 Score=17.98 Aligned_cols=11 Identities=18% Similarity=0.618 Sum_probs=8.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 11 ~~C~~C~k~f~ 21 (44)
T 2emx_A 11 FGCSCCEKAFS 21 (44)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCcccC
Confidence 88888888765
No 196
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.43 E-value=14 Score=18.15 Aligned_cols=11 Identities=18% Similarity=0.760 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytf_A 13 FECSECQKAFN 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCCcccC
Confidence 78888887764
No 197
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.43 E-value=16 Score=18.01 Aligned_cols=11 Identities=27% Similarity=0.938 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2en3_A 13 FQCKECGMNFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCcccChhhC
Confidence 78888887765
No 198
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=39.36 E-value=11 Score=23.00 Aligned_cols=31 Identities=16% Similarity=0.389 Sum_probs=21.1
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCeeecccccc
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDVAD 42 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~~~~~~ 42 (120)
.++=|..|+-++..+ .|++|+...-.+++..
T Consensus 22 ~~rAC~~C~~v~~~d----~CPnCgs~~~T~~w~G 52 (81)
T 3p8b_A 22 SEKACRHCHYITSED----RCPVCGSRDLSEEWFD 52 (81)
T ss_dssp CCEEETTTCBEESSS----SCTTTCCCCEESCEEE
T ss_pred hHHHHhhCCCccCCC----CCCCCCCCccCCccce
Confidence 356799999776433 4999998765555433
No 199
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.22 E-value=14 Score=18.18 Aligned_cols=11 Identities=36% Similarity=1.056 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep3_A 13 YRCAECGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 200
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=39.18 E-value=14 Score=18.12 Aligned_cols=11 Identities=36% Similarity=1.074 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em9_A 13 YNCKECGKSFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCccccccC
Confidence 78888887764
No 201
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.01 E-value=13 Score=18.13 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~F~ 23 (44)
T 2eox_A 13 YNCNECGKAFT 23 (44)
T ss_dssp EEETTTTEEES
T ss_pred eECcccCcccC
Confidence 78888887765
No 202
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.00 E-value=15 Score=18.12 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eq0_A 13 YKCHECGKVFR 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 203
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.85 E-value=14 Score=18.14 Aligned_cols=11 Identities=36% Similarity=1.174 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2emp_A 13 YMCNECGKAFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 204
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=38.73 E-value=3.1 Score=24.41 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=24.8
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
.....|-.||-.+- -+-|...+|. +.|-.||-.|+
T Consensus 7 ~~~~~C~~C~t~~T----p~WR~gp~G~---~LCNaCGl~~~ 41 (66)
T 4gat_A 7 NGPTTCTNCFTQTT----PLWRRNPEGQ---PLCNACGLFLK 41 (66)
T ss_dssp SSSCCCTTTCCCCC----SSCEEETTTE---EECHHHHHHHH
T ss_pred CCCCCCCCCCCCCC----CcCCcCCCCC---CccHHHHHHHH
Confidence 34567999998763 4556777776 66888887664
No 205
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.66 E-value=15 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.960 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emf_A 13 FECTECGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 206
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.63 E-value=15 Score=18.06 Aligned_cols=11 Identities=36% Similarity=1.096 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eme_A 13 YVCDYCGKAFG 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCChhhC
Confidence 88888887764
No 207
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.54 E-value=15 Score=18.11 Aligned_cols=11 Identities=27% Similarity=0.760 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2em3_A 13 YECKVCSKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 78888887764
No 208
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.51 E-value=13 Score=18.24 Aligned_cols=11 Identities=27% Similarity=1.023 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~F~ 23 (45)
T 2epu_A 13 FECTHCGKSFR 23 (45)
T ss_dssp EEETTTTEEES
T ss_pred ccCCCCCCccC
Confidence 78888887764
No 209
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=38.46 E-value=28 Score=25.44 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=20.7
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCc
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~ 115 (120)
...+||.||..-..-.+ +.-..|-|..|..
T Consensus 234 ~g~pC~~CG~~I~~~~~--------~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 234 EGLPCPACGRPVERRVV--------AGRGTHFCPTCQG 263 (266)
T ss_dssp TTSBCTTTCCBCEEEES--------SSCEEEECTTTTT
T ss_pred CCCCCCCCCCEeeEEEE--------CCCceEECCCCCC
Confidence 45789999998553332 3445588999975
No 210
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=38.42 E-value=15 Score=18.10 Aligned_cols=11 Identities=36% Similarity=0.993 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ema_A 13 YKCNECGKVFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCcchhC
Confidence 78888887764
No 211
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.40 E-value=15 Score=18.15 Aligned_cols=11 Identities=27% Similarity=1.002 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em2_A 13 FKCKECGKAFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECCcCCchhC
Confidence 78888887764
No 212
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.32 E-value=15 Score=18.09 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ene_A 13 YKCNECGKVFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 213
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=38.27 E-value=24 Score=31.02 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.7
Q ss_pred EEeCCCCCeeecc
Q 040426 26 VVCSSCKFKKNVQ 38 (120)
Q Consensus 26 ~~C~~C~~~~~~~ 38 (120)
|.|++|.|++-.+
T Consensus 503 y~c~~c~~~ef~~ 515 (1041)
T 3f2b_A 503 YVCPNCKHSEFFN 515 (1041)
T ss_dssp EECTTTCCEEECC
T ss_pred ccCcccccccccc
Confidence 8999999987543
No 214
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=38.11 E-value=6.7 Score=18.16 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=7.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 3 ~~C~~C~k~F~ 13 (33)
T 1rim_A 3 FACPECPKRFM 13 (33)
T ss_dssp CCCSSSCCCCS
T ss_pred ccCCCCCchhC
Confidence 56777776654
No 215
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=37.97 E-value=16 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.532 Sum_probs=19.7
Q ss_pred cccCccCCCcccccCCcEEeCCCCCe
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFK 34 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~ 34 (120)
..-|+.||.+..|+.. .|..|+-.
T Consensus 47 ~~rC~~CG~~~fPPr~--~Cp~C~s~ 70 (145)
T 2gnr_A 47 GSKCSKCGRIFVPARS--YCEHCFVK 70 (145)
T ss_dssp EEECTTTCCEEESCCS--EETTTTEE
T ss_pred EEEECCCCcEEeCCCC--CCCCCCCC
Confidence 3479999999988754 79999876
No 216
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=37.94 E-value=28 Score=20.59 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=20.9
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeee
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
...|..|+.-..+-.-+..||.||...=
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 46 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFC 46 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEC
Confidence 4579999987665444499999998764
No 217
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.93 E-value=15 Score=18.10 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eoo_A 13 YGCNECGKNFG 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EEccccCcccC
Confidence 78888887765
No 218
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.85 E-value=24 Score=22.75 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=21.7
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
...|..|+.-..+-.-+..||.||...=.
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~ 97 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCA 97 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECG
T ss_pred CCCCcCcCCccccccccccCCCCCeEECh
Confidence 56899999876554444999999997643
No 219
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.79 E-value=15 Score=18.03 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytk_A 13 YKCNECGKVFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EeCCcCCCccC
Confidence 78888887764
No 220
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.73 E-value=16 Score=17.94 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2en8_A 13 HTCDECGKNFC 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCcccC
Confidence 78888887764
No 221
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.60 E-value=14 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.819 Sum_probs=6.8
Q ss_pred eEEEEcCCCCceec
Q 040426 105 TTYYICPRCGHRCQ 118 (120)
Q Consensus 105 T~fY~C~~C~~~w~ 118 (120)
+--|+|..||+.+.
T Consensus 130 ~~~y~C~~Cg~~~~ 143 (165)
T 2lcq_A 130 KWRYVCIGCGRKFS 143 (165)
T ss_dssp CCCEEESSSCCEES
T ss_pred cEEEECCCCCCccc
Confidence 33455555555543
No 222
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=37.59 E-value=16 Score=17.93 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2el4_A 13 YGCSQCAKTFS 23 (46)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCchhC
Confidence 78888887764
No 223
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.47 E-value=16 Score=18.05 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..++
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em8_A 13 YKCVECGKGYK 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECcccCchhC
Confidence 78888887764
No 224
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.38 E-value=16 Score=17.99 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eml_A 13 YECSVCGKAFS 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCcCCccC
Confidence 78888887764
No 225
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=37.31 E-value=8.7 Score=24.01 Aligned_cols=11 Identities=36% Similarity=0.739 Sum_probs=8.6
Q ss_pred cCccCCCcccc
Q 040426 11 FCKFCGTMLRM 21 (120)
Q Consensus 11 FCp~CgnlL~~ 21 (120)
=||.||+-|.+
T Consensus 49 ~CPvCgs~l~~ 59 (112)
T 1l8d_A 49 KCPVCGRELTD 59 (112)
T ss_dssp ECTTTCCEECH
T ss_pred CCCCCCCcCCH
Confidence 48888888775
No 226
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=37.19 E-value=17 Score=28.24 Aligned_cols=26 Identities=15% Similarity=0.498 Sum_probs=21.0
Q ss_pred ccCcc--CCCcccccCCc-EEeCCCCCee
Q 040426 10 LFCKF--CGTMLRMESNH-VVCSSCKFKK 35 (120)
Q Consensus 10 ~FCp~--CgnlL~~~~~~-~~C~~C~~~~ 35 (120)
.-||. |+.-+....++ |.|..|+...
T Consensus 309 ~aC~~~~C~kkv~~~~~g~~~C~~C~~~~ 337 (444)
T 4gop_C 309 TACASEGCNKKVNLDHENNWRCEKCDRSY 337 (444)
T ss_dssp EECCSTTCCCBEEECTTSCEEETTTTEEE
T ss_pred ccCCcccCCCccccCCCccEECCCCCCcC
Confidence 36999 99998876555 9999999764
No 227
>2agh_C Zinc finger protein HRX; transcription; NMR {Homo sapiens}
Probab=37.14 E-value=11 Score=18.39 Aligned_cols=7 Identities=29% Similarity=0.240 Sum_probs=3.9
Q ss_pred cCCCccc
Q 040426 14 FCGTMLR 20 (120)
Q Consensus 14 ~CgnlL~ 20 (120)
+|||+|+
T Consensus 2 d~gnilp 8 (31)
T 2agh_C 2 DDGNILP 8 (31)
T ss_dssp CCCCSSC
T ss_pred CccccCh
Confidence 4566554
No 228
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=37.02 E-value=13 Score=18.03 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=7.6
Q ss_pred cccccccCCC
Q 040426 79 KRACEKCQNP 88 (120)
Q Consensus 79 ~~~CpkCg~~ 88 (120)
...||.||..
T Consensus 3 ~~~C~~C~k~ 12 (31)
T 1zfo_A 3 NPNCARCGKI 12 (31)
T ss_dssp CCBCSSSCSB
T ss_pred CCcCCccCCE
Confidence 4579999875
No 229
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.79 E-value=7.9 Score=24.77 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=5.3
Q ss_pred EEcCCCCcee
Q 040426 108 YICPRCGHRC 117 (120)
Q Consensus 108 Y~C~~C~~~w 117 (120)
|+|.+||++|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 4555555554
No 230
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.72 E-value=16 Score=17.92 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2enc_A 13 FKCEECGKGFY 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCCCcCC
Confidence 78888887764
No 231
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.54 E-value=15 Score=18.09 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ysp_A 13 YKCEKCGKGYN 23 (46)
T ss_dssp EEETTTTEEES
T ss_pred eECCCCCCccC
Confidence 78888887764
No 232
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.50 E-value=17 Score=17.86 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=8.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..++
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytg_A 13 FKCGECGKSYN 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCcccC
Confidence 78888887765
No 233
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=36.43 E-value=3.3 Score=23.37 Aligned_cols=38 Identities=21% Similarity=0.549 Sum_probs=21.3
Q ss_pred cccccccCCCceEE--EEeecccCCCCceEEEEcCCCCceec
Q 040426 79 KRACEKCQNPEMYY--STRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 79 ~~~CpkCg~~ea~y--~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
...|+.||..-..- +...+|.-. + ..-|.|..|+..+.
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHT-G-EKPYKCDECGKAFI 57 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTC-C-SCSEECSSSCCEES
T ss_pred CEECCCCCcccCCHHHHHHHHHHcC-C-CcCeeCCCCCCccC
Confidence 46799998753221 111222211 1 12399999998875
No 234
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=36.36 E-value=17 Score=17.91 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2el6_A 13 YKCSQCEKSFS 23 (46)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 78888887764
No 235
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=36.36 E-value=7.5 Score=31.84 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=0.0
Q ss_pred CCcccCccCCCccccc-CCcEEeCCCCCeee
Q 040426 7 RDFLFCKFCGTMLRME-SNHVVCSSCKFKKN 36 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~-~~~~~C~~C~~~~~ 36 (120)
..+.||..|+.+|.-- ..++.|..|++...
T Consensus 46 ~~p~~C~~C~~~i~g~~~qg~~C~~C~~~~H 76 (674)
T 3pfq_A 46 KQPTFCSHCTDFIWGFGKQGFQCQVCSFVVH 76 (674)
T ss_dssp -------------------------------
T ss_pred CCCCccccccccccccCCceeECCCCCCCcC
Confidence 4577999999998743 23499999999754
No 236
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=36.32 E-value=17 Score=18.83 Aligned_cols=11 Identities=27% Similarity=0.576 Sum_probs=7.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 25 ~~C~~C~k~f~ 35 (54)
T 1yui_A 25 ATCPICYAVIR 35 (54)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCcccC
Confidence 67777776654
No 237
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.02 E-value=10 Score=18.48 Aligned_cols=11 Identities=36% Similarity=0.908 Sum_probs=7.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2eoj_A 13 YECCECGKVFS 23 (44)
T ss_dssp CEETTTTEECS
T ss_pred eeCCCCCCccC
Confidence 77777777664
No 238
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.83 E-value=17 Score=17.77 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2emm_A 13 HKCNECGKSFI 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCChhhC
Confidence 77888887764
No 239
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.80 E-value=18 Score=17.79 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yso_A 13 HQCRECGEIFF 23 (46)
T ss_dssp EECTTTCCEES
T ss_pred EEccccChhhC
Confidence 78888887765
No 240
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.62 E-value=16 Score=17.99 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2en1_A 13 FKCEECGKRFT 23 (46)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 78888887764
No 241
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.40 E-value=36 Score=20.52 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=19.9
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCee
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
....|..|+.-..+-.-+-.||.||...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 3458999998665554448888888764
No 242
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.36 E-value=18 Score=17.83 Aligned_cols=11 Identities=27% Similarity=0.715 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em5_A 13 HQCHECGRGFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCcCCCccC
Confidence 78888887764
No 243
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.06 E-value=18 Score=17.74 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep2_A 13 YECSICGKSFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred cCCCCCCcccC
Confidence 77888887764
No 244
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=34.87 E-value=14 Score=23.41 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=28.6
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCce
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~ 116 (120)
+.-.|-.|+++-+.-+. +.|=+-=+||-+|..|...
T Consensus 12 l~FTC~~C~tRs~k~iS---k~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 12 IAFTCKKCNTRSSHTMS---KQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEETTTTEEEEEEEE---HHHHHTSEEEEECTTTCCE
T ss_pred EEEEccCCCCcchhhcC---HHHhhCCEEEEEcCCCccc
Confidence 56679999998887665 4477778899999999765
No 245
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=34.47 E-value=19 Score=26.33 Aligned_cols=33 Identities=27% Similarity=0.538 Sum_probs=19.4
Q ss_pred cccccccccCCCceEEEEeec-ccCCCCceEEEEcCCCCce
Q 040426 77 KVKRACEKCQNPEMYYSTRQT-RSADEGQTTYYICPRCGHR 116 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~-RSADE~~T~fY~C~~C~~~ 116 (120)
.....|++||+. .+ .-|. ....+| -.|..|+.+
T Consensus 132 ~~~f~C~~C~~~--~~-v~~~~~~~~~P----~~Cp~C~~~ 165 (279)
T 1ltl_A 132 KAVFECRGCMRH--HA-VTQSTNMITEP----SLCSECGGR 165 (279)
T ss_dssp EEEEEETTTCCE--EE-EECSSSSCCCC----SCCTTTCCC
T ss_pred EEEEEcCCCCCE--EE-EEecCCcccCC----CcCCCCCCC
Confidence 345689999964 23 3333 223333 378889865
No 246
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.22 E-value=19 Score=17.65 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=8.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytd_A 13 YKCSECGKAFH 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCeeC
Confidence 78888887764
No 247
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=33.67 E-value=14 Score=22.94 Aligned_cols=12 Identities=33% Similarity=0.894 Sum_probs=9.4
Q ss_pred EEeCCCCCeeec
Q 040426 26 VVCSSCKFKKNV 37 (120)
Q Consensus 26 ~~C~~C~~~~~~ 37 (120)
+.|..|.|....
T Consensus 16 v~C~~C~yt~~~ 27 (92)
T 2kwq_A 16 VTCKTCKYTHFK 27 (92)
T ss_dssp EEETTTCCEESS
T ss_pred EEccCCcceecC
Confidence 889999887654
No 248
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.54 E-value=9.6 Score=18.44 Aligned_cols=11 Identities=45% Similarity=1.120 Sum_probs=7.0
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2eos_A 12 YPCEICGTRFR 22 (42)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCccC
Confidence 66766766554
No 249
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.34 E-value=20 Score=17.56 Aligned_cols=11 Identities=27% Similarity=0.778 Sum_probs=8.1
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep0_A 13 YKCDVCHKSFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eeCcccCcccC
Confidence 77888877664
No 250
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.88 E-value=10 Score=18.22 Aligned_cols=11 Identities=36% Similarity=1.065 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 12 ~~C~~C~k~f~ 22 (42)
T 2ytb_A 12 YRCDQCGKAFS 22 (42)
T ss_dssp BCCTTTTCCBS
T ss_pred eeCCCccchhC
Confidence 66666666553
No 251
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=32.58 E-value=4.8 Score=18.52 Aligned_cols=10 Identities=40% Similarity=1.238 Sum_probs=5.9
Q ss_pred EEcCCCCcee
Q 040426 108 YICPRCGHRC 117 (120)
Q Consensus 108 Y~C~~C~~~w 117 (120)
|.|..||..+
T Consensus 3 ~~C~~C~k~f 12 (32)
T 2kfq_A 3 FACPACPKRF 12 (32)
T ss_dssp SSSSSSCTTH
T ss_pred CCCCCCCccc
Confidence 5566666554
No 252
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.40 E-value=10 Score=18.17 Aligned_cols=11 Identities=27% Similarity=0.854 Sum_probs=7.0
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..++
T Consensus 11 ~~C~~C~k~f~ 21 (42)
T 2yte_A 11 YSCAECKETFS 21 (42)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCccC
Confidence 66777766554
No 253
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=32.28 E-value=4.3 Score=28.15 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=20.6
Q ss_pred ccccccccCCCceEE--EEeecccCCCCceEEEEcCCCCcee
Q 040426 78 VKRACEKCQNPEMYY--STRQTRSADEGQTTYYICPRCGHRC 117 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y--~~~Q~RSADE~~T~fY~C~~C~~~w 117 (120)
....|+-||-.-+.| +..|+.-++++.+++|-.+.|...|
T Consensus 17 ~~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~ 58 (175)
T 2hpu_A 17 PETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAY 58 (175)
T ss_dssp ------------------CEEEEETTCSSEEEESCHHHHHHH
T ss_pred CCceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHH
Confidence 357899999887765 7889988888999999998887665
No 254
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.27 E-value=19 Score=17.63 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=8.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2en6_A 13 YGCNECGKTFS 23 (46)
T ss_dssp EEETTTTEEES
T ss_pred eECCCCCcccC
Confidence 78888887764
No 255
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=32.02 E-value=17 Score=28.68 Aligned_cols=26 Identities=23% Similarity=0.624 Sum_probs=20.1
Q ss_pred cccCccCCCcccccCC--cEEeCCCCCe
Q 040426 9 FLFCKFCGTMLRMESN--HVVCSSCKFK 34 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~--~~~C~~C~~~ 34 (120)
+..|..||.++++... .+.|+.|+-.
T Consensus 5 ~~VC~~CG~~~~~~~~~~~~~C~~C~~~ 32 (436)
T 3qqc_A 5 VWVCENCGHIALEDKRRRRVYCPVCGEE 32 (436)
T ss_dssp EEEETTTCCBCEEETTTTEEECTTTCCS
T ss_pred EEEeCCCCceeeeccccCccCCCCCCCC
Confidence 5689999999876432 3999999864
No 256
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=31.91 E-value=43 Score=19.84 Aligned_cols=29 Identities=21% Similarity=0.497 Sum_probs=21.5
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCeee
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
....|..|+.-..+-.-+..||.||...=
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C 48 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLC 48 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEEC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEC
Confidence 35589999987665544499999998764
No 257
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.56 E-value=30 Score=24.22 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=21.2
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
...|+.|+.-..+-.-+..||.||...=.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~ 189 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCG 189 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECS
T ss_pred CCccCCCCCccCCcccccccCCcCCEECh
Confidence 36899998766544444999999997643
No 258
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.95 E-value=12 Score=18.38 Aligned_cols=11 Identities=36% Similarity=1.050 Sum_probs=7.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eq3_A 13 YECNQCGKAFS 23 (46)
T ss_dssp SEETTTTEECS
T ss_pred eECCCCChhhC
Confidence 66777776654
No 259
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.93 E-value=45 Score=19.71 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=20.8
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
...|..|+.-..+-.-+-.||.||...=.
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~ 42 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCS 42 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECT
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEECh
Confidence 45899999876544444899999987643
No 260
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.55 E-value=13 Score=18.37 Aligned_cols=11 Identities=27% Similarity=0.721 Sum_probs=6.4
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2enh_A 13 YECDVCRKAFS 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred cCCCCcCchhC
Confidence 56666665553
No 261
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.52 E-value=24 Score=19.39 Aligned_cols=12 Identities=17% Similarity=0.343 Sum_probs=9.1
Q ss_pred EEeCCCCCeeec
Q 040426 26 VVCSSCKFKKNV 37 (120)
Q Consensus 26 ~~C~~C~~~~~~ 37 (120)
|.|..||.....
T Consensus 5 y~C~~C~k~F~~ 16 (60)
T 4gzn_C 5 FFCNFCGKTYRD 16 (60)
T ss_dssp EECTTTCCEESS
T ss_pred ccCCCCCCEeCC
Confidence 788888887653
No 262
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.18 E-value=12 Score=18.50 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=6.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2enf_A 13 YKCNECGKVFT 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCcccC
Confidence 66666666553
No 263
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.04 E-value=12 Score=18.45 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2emg_A 13 FICSECGKVFT 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred EECCccCcccC
Confidence 66666666553
No 264
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=30.02 E-value=23 Score=19.04 Aligned_cols=12 Identities=25% Similarity=0.802 Sum_probs=8.3
Q ss_pred EEEcCCCCceec
Q 040426 107 YYICPRCGHRCQ 118 (120)
Q Consensus 107 fY~C~~C~~~w~ 118 (120)
-|.|..||..|.
T Consensus 14 ~~~C~~C~k~F~ 25 (62)
T 1vd4_A 14 SFKCPVCSSTFT 25 (62)
T ss_dssp EEECSSSCCEEE
T ss_pred CccCCCCCchhc
Confidence 377877877664
No 265
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=29.93 E-value=24 Score=18.73 Aligned_cols=11 Identities=27% Similarity=0.736 Sum_probs=8.0
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 11 ~~C~~C~k~f~ 21 (66)
T 2drp_A 11 YRCKVCSRVYT 21 (66)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCcchhC
Confidence 77777777664
No 266
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=29.86 E-value=12 Score=22.45 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=15.6
Q ss_pred cccCccCCCcccccCCc--EEeCCCCCe
Q 040426 9 FLFCKFCGTMLRMESNH--VVCSSCKFK 34 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~--~~C~~C~~~ 34 (120)
..||.+|+..-.+...- ..|..|+-.
T Consensus 37 ~I~CnDC~~~s~v~~h~lg~kC~~C~Sy 64 (79)
T 2k2d_A 37 DILCNDCNGRSTVQFHILGMKCKICESY 64 (79)
T ss_dssp EEEESSSCCEEEEECCTTCCCCTTTSCC
T ss_pred EEECCCCCCCccCCceeecccCcCCCCc
Confidence 34777777665555433 367777653
No 267
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=29.75 E-value=12 Score=18.46 Aligned_cols=21 Identities=19% Similarity=0.426 Sum_probs=10.6
Q ss_pred cCccCCCcccccCCcEEeCCCCC
Q 040426 11 FCKFCGTMLRMESNHVVCSSCKF 33 (120)
Q Consensus 11 FCp~CgnlL~~~~~~~~C~~C~~ 33 (120)
.||.||++-.... ..|..|+.
T Consensus 7 ~C~~C~~~Nfa~r--~~C~~C~~ 27 (32)
T 2lk0_A 7 LCNKCCLNNFRKR--LKCFRCGA 27 (32)
T ss_dssp ECTTTCCEEETTC--CBCTTTCC
T ss_pred CcCcCcCCcChhc--ceecCCCC
Confidence 3566665544443 34555554
No 268
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=29.44 E-value=21 Score=23.33 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=13.4
Q ss_pred cccCcc-CCCcccccCCc---EEeCCCCCe
Q 040426 9 FLFCKF-CGTMLRMESNH---VVCSSCKFK 34 (120)
Q Consensus 9 ~~FCp~-CgnlL~~~~~~---~~C~~C~~~ 34 (120)
+--|+. |||++..-.+. ++| ||-.
T Consensus 7 fYkC~~~CGnivev~~~g~~~l~C--CG~~ 34 (128)
T 1y07_A 7 FFLQKESAGFFLGMDAPAGSSVAC--GSEV 34 (128)
T ss_dssp EECC-----CEEEESCCTTCEEEE--TTEE
T ss_pred EEECCCCCCCEEEEEcCCCcceee--cCcc
Confidence 446999 99999875443 777 7754
No 269
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.38 E-value=40 Score=20.34 Aligned_cols=28 Identities=14% Similarity=0.256 Sum_probs=20.5
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeee
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
...|..|+.-..+-.-+..|+.||...=
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C 47 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFC 47 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCcCcCCCCcccchhhCccccCCCCEEC
Confidence 4579999976655444499999998763
No 270
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.22 E-value=13 Score=18.50 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..++
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eon_A 13 YKCQVCGKAFR 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred cCCCCCCcccC
Confidence 56666666553
No 271
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=29.17 E-value=4.6 Score=23.44 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=24.1
Q ss_pred ccccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 78 VKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 78 ~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
....|-.||-.+- -+-|...+|. +.|-.||-.|+
T Consensus 6 ~~~~C~~C~tt~T----p~WR~gp~G~---~LCNACGl~~~ 39 (63)
T 3dfx_A 6 AGTSCANCQTTTT----TLWRRNANGD---PVCNACGLYYK 39 (63)
T ss_dssp TTCCCTTTCCSCC----SSCCCCTTSC---CCCHHHHHHHH
T ss_pred CCCcCCCcCCCCC----CccCCCCCCC---chhhHHHHHHH
Confidence 4567999998753 3557788887 56877876664
No 272
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=28.96 E-value=24 Score=24.14 Aligned_cols=28 Identities=29% Similarity=0.638 Sum_probs=21.1
Q ss_pred CcccCccCCCcccccCCcEEeCC-------CCCee
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSS-------CKFKK 35 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~-------C~~~~ 35 (120)
.+.=||.|+.-|......|.|+. |.|..
T Consensus 77 al~~CP~C~G~l~y~~~~Y~C~G~isewtkC~~~t 111 (160)
T 2riq_A 77 ALLPCEECSGQLVFKSDAYYCTGDVTAWTKCMVKT 111 (160)
T ss_dssp EECCCTTTCCCEEEETTEEEECCEEETTEECCCEE
T ss_pred CCCCCCCCCCEEEEeCCeEEECCCCCCcccCcccC
Confidence 45679999987777766699984 77764
No 273
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.90 E-value=12 Score=18.48 Aligned_cols=11 Identities=36% Similarity=1.074 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eq1_A 13 YKCNECGKAFR 23 (46)
T ss_dssp CCCTTTTCCCS
T ss_pred eECCcCChhhC
Confidence 66666666553
No 274
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.89 E-value=23 Score=17.61 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.2
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 77888887764
No 275
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=28.88 E-value=19 Score=21.23 Aligned_cols=30 Identities=13% Similarity=0.350 Sum_probs=18.5
Q ss_pred CCcccCccCCCcccccCCcEEeCCCCCeeecccc
Q 040426 7 RDFLFCKFCGTMLRMESNHVVCSSCKFKKNVQDV 40 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~~~~ 40 (120)
.+-.-|.+|.-++ +.-.|++|+...-.+++
T Consensus 9 ~~~~AC~~C~~~~----~~~~CPnC~s~~tS~~w 38 (69)
T 1ryq_A 9 SSEKACRHCHYIT----SEDRCPVCGSRDLSEEW 38 (69)
T ss_dssp --CEEETTTCBEE----SSSSCTTTCCCCEESCE
T ss_pred chhhhHHhCCccc----cCCcCCCccCCccCCcc
Confidence 3455688898866 23579999866433333
No 276
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.78 E-value=11 Score=18.39 Aligned_cols=11 Identities=36% Similarity=1.232 Sum_probs=6.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2en7_A 13 YVCNECGKAFR 23 (44)
T ss_dssp SCCTTTCCCCS
T ss_pred eECCCCCCccC
Confidence 55666665543
No 277
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=28.75 E-value=12 Score=30.89 Aligned_cols=27 Identities=22% Similarity=0.483 Sum_probs=0.5
Q ss_pred cccCccCCCcccc-cCCc--EEeCC---CCCee
Q 040426 9 FLFCKFCGTMLRM-ESNH--VVCSS---CKFKK 35 (120)
Q Consensus 9 ~~FCp~CgnlL~~-~~~~--~~C~~---C~~~~ 35 (120)
+..||.||+-|.. .++. +.|.+ |+.+.
T Consensus 415 P~~CP~Cgs~l~~~~~~~~~~rC~n~~~CpaQ~ 447 (615)
T 3sgi_A 415 PTTCPECGSPLAPEKEGDADIRCPNARGCPGQL 447 (615)
T ss_dssp C--------------------------------
T ss_pred CCCCCCCCCeeeecCCCCEEEEcCCCCCCHHHH
Confidence 4579999999987 3332 89986 77653
No 278
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.57 E-value=13 Score=18.37 Aligned_cols=11 Identities=36% Similarity=0.999 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em6_A 13 YKCDVCGKEFS 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCcccC
Confidence 66666666553
No 279
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=28.51 E-value=72 Score=23.87 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=23.4
Q ss_pred cccccccCCCceEEEEe-------ecc-cCC---CC--ceEEEEcCCCCceecc
Q 040426 79 KRACEKCQNPEMYYSTR-------QTR-SAD---EG--QTTYYICPRCGHRCQE 119 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~-------Q~R-SAD---E~--~T~fY~C~~C~~~w~~ 119 (120)
...||-||..-..|..+ +.. +.+ |+ .-..+.|..||+.+..
T Consensus 12 ~~~C~~Cg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~ 65 (416)
T 4e2x_A 12 PTACRVCGGGVQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLT 65 (416)
T ss_dssp CEECTTTSCEEEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEES
T ss_pred CCcCCCCCCeeeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeec
Confidence 34699999992223332 111 112 11 1356889999988753
No 280
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.43 E-value=12 Score=18.28 Aligned_cols=11 Identities=27% Similarity=0.730 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2eou_A 13 SECQECGKIFR 23 (44)
T ss_dssp CCCTTTCCCCS
T ss_pred eECCCCCcccC
Confidence 56666666553
No 281
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.21 E-value=22 Score=23.84 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=20.3
Q ss_pred cccccccccCCCceEEEEeecccCCCCceEEEEcCCCC
Q 040426 77 KVKRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCG 114 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~ 114 (120)
++...||.||..-+.||=.-=+-=|+. .-.|-|..||
T Consensus 69 ~~~~~C~~Cg~~f~~Y~C~~C~l~d~~-k~~yHC~~Cg 105 (143)
T 2dkt_A 69 HAQQTCEDCSTLFGEYYCSICHLFDKD-KRQYHCESCG 105 (143)
T ss_dssp CSCSBCSSSCCBSCSEECSSSCCEECS-SSEEEETTTT
T ss_pred cccCcCCCCCccceeeEeceeecccCC-CceecCCCCC
Confidence 345689999998777652111111222 3346666665
No 282
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.20 E-value=11 Score=22.80 Aligned_cols=12 Identities=17% Similarity=0.534 Sum_probs=10.2
Q ss_pred EEeCCCCCeeec
Q 040426 26 VVCSSCKFKKNV 37 (120)
Q Consensus 26 ~~C~~C~~~~~~ 37 (120)
|.|..|+.....
T Consensus 20 ~~C~~C~k~f~~ 31 (115)
T 2dmi_A 20 FRCKDCSAAYDT 31 (115)
T ss_dssp EEBSSSSCEESS
T ss_pred EECCccCchhcC
Confidence 999999987754
No 283
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.01 E-value=14 Score=18.20 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|+
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eov_A 13 YKCSDCGKSFT 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred ccCCccChhhC
Confidence 66666666554
No 284
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.00 E-value=14 Score=18.30 Aligned_cols=11 Identities=36% Similarity=1.126 Sum_probs=6.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yth_A 13 FQCEECGKRFT 23 (46)
T ss_dssp BCCSSSCCCBS
T ss_pred CCCCCCCcccC
Confidence 66666666553
No 285
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.70 E-value=14 Score=18.13 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eop_A 13 HECRECGKSFS 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred eeCCCCCchhC
Confidence 66666666553
No 286
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.63 E-value=14 Score=18.20 Aligned_cols=11 Identities=36% Similarity=0.902 Sum_probs=6.9
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|+
T Consensus 13 ~~C~~C~k~F~ 23 (47)
T 2epx_A 13 YECIECGKAFI 23 (47)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCccCchhC
Confidence 66666666554
No 287
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.41 E-value=13 Score=18.40 Aligned_cols=11 Identities=27% Similarity=0.745 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoh_A 13 YECKECRKTFI 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred cCCCCcCchhC
Confidence 56666666553
No 288
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=27.32 E-value=30 Score=24.33 Aligned_cols=32 Identities=16% Similarity=0.430 Sum_probs=20.2
Q ss_pred CCcccCccCCCcccccC-CcEEeCCCCCeeecc
Q 040426 7 RDFLFCKFCGTMLRMES-NHVVCSSCKFKKNVQ 38 (120)
Q Consensus 7 ~~~~FCp~CgnlL~~~~-~~~~C~~C~~~~~~~ 38 (120)
....-|..||..+.+.. ..+.|..|+...+..
T Consensus 8 ~~~~~Cw~C~~~~~~~~~~~~fC~~c~~~q~~~ 40 (207)
T 3bvo_A 8 SNYPRCWNCGGPWGPGREDRFFCPQCRALQAPD 40 (207)
T ss_dssp ---CBCSSSCCBCCSSCSCCCBCTTTCCBCCCC
T ss_pred CCCCCCCCCCCCcccccccccccccccccCCCC
Confidence 34567999997643322 238899999887654
No 289
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=27.31 E-value=37 Score=23.49 Aligned_cols=28 Identities=18% Similarity=0.500 Sum_probs=20.5
Q ss_pred ccCccCCCcccccCC-c--EEeCCCCCeeec
Q 040426 10 LFCKFCGTMLRMESN-H--VVCSSCKFKKNV 37 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~-~--~~C~~C~~~~~~ 37 (120)
.|||.|+......+. . +.|..|..=...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~ 33 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHS 33 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEG
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccch
Confidence 589999976555542 2 899999876654
No 290
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.22 E-value=51 Score=19.26 Aligned_cols=27 Identities=19% Similarity=0.642 Sum_probs=21.6
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
.+..|..|.+++.+ ...|..|++....
T Consensus 14 ~i~~C~IC~~~i~~---g~~C~~C~h~fH~ 40 (74)
T 2ct0_A 14 AVKICNICHSLLIQ---GQSCETCGIRMHL 40 (74)
T ss_dssp SSCBCSSSCCBCSS---SEECSSSCCEECH
T ss_pred CCCcCcchhhHccc---CCccCCCCchhhH
Confidence 46799999999974 3789999887653
No 291
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=27.17 E-value=16 Score=17.95 Aligned_cols=11 Identities=55% Similarity=1.352 Sum_probs=7.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 11 ~~C~~C~k~f~ 21 (45)
T 2epq_A 11 YSCPVCGLRFK 21 (45)
T ss_dssp SEETTTTEECS
T ss_pred CcCCCCCcccC
Confidence 67777776654
No 292
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=27.14 E-value=16 Score=17.98 Aligned_cols=11 Identities=27% Similarity=0.914 Sum_probs=6.1
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ely_A 13 FKCVECGKGFS 23 (46)
T ss_dssp BCCSSSCCCBS
T ss_pred cccCccCcccC
Confidence 55666655543
No 293
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=27.11 E-value=29 Score=17.66 Aligned_cols=11 Identities=18% Similarity=0.851 Sum_probs=6.3
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
|.|..|+....
T Consensus 2 ~~C~~C~~~f~ 12 (57)
T 1bbo_A 2 YICEECGIRXK 12 (57)
T ss_dssp CBCTTTCCBCS
T ss_pred CcCCCCcCcCC
Confidence 35666666543
No 294
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=26.63 E-value=30 Score=17.60 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=6.7
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
+.|..|+....
T Consensus 5 ~~C~~C~~~f~ 15 (57)
T 3uk3_C 5 RECSYCGKFFR 15 (57)
T ss_dssp CBCTTTCCBCS
T ss_pred ccCCCCcchhC
Confidence 56666666543
No 295
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=26.63 E-value=48 Score=18.89 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCCcccCccCCCcccccC-----Cc------EEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRMES-----NH------VVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~-----~~------~~C~~C~~~~~~ 37 (120)
.....-|+.|+..+++.+ +. |.|..|+..-..
T Consensus 4 ~~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 46 (81)
T 1a7i_A 4 WGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDS 46 (81)
T ss_dssp ----CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECS
T ss_pred CCCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCC
Confidence 445678999999887543 11 999999876543
No 296
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=26.54 E-value=30 Score=17.87 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=6.4
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
|.|..|++...
T Consensus 3 ~~C~~C~~~f~ 13 (60)
T 2adr_A 3 FVCEVCTRAFA 13 (60)
T ss_dssp BCCTTTCCCBS
T ss_pred CcCCCCccccC
Confidence 45666666543
No 297
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=26.49 E-value=69 Score=21.46 Aligned_cols=19 Identities=0% Similarity=-0.143 Sum_probs=14.3
Q ss_pred cccccccccccCCCceEEE
Q 040426 75 LSKVKRACEKCQNPEMYYS 93 (120)
Q Consensus 75 ~~~~~~~CpkCg~~ea~y~ 93 (120)
..++++.|.+||.+--.-|
T Consensus 86 m~RtEV~C~~Cg~HLGHVF 104 (144)
T 3e0o_A 86 MIRTEVRSRTADSHLGHVF 104 (144)
T ss_dssp SCEEEEEETTTCCEEEEEE
T ss_pred ceEEEEEcCCCCCccCCcc
Confidence 4578999999988755444
No 298
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.45 E-value=16 Score=17.86 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=7.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eoe_A 13 YKCNECGKVFT 23 (46)
T ss_dssp SEETTTTEECS
T ss_pred eECCCcChhhC
Confidence 77777776654
No 299
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=26.45 E-value=19 Score=25.07 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=12.8
Q ss_pred cccCccCCCcccccCC
Q 040426 9 FLFCKFCGTMLRMESN 24 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~ 24 (120)
-.|||.|+.+..|++.
T Consensus 134 KlyCP~C~DvY~p~s~ 149 (182)
T 1qf8_A 134 KLYCPKCMDVYTPKSS 149 (182)
T ss_dssp EEECTTTCCEECCSSG
T ss_pred EEECCCccceeCCCcc
Confidence 4699999998887753
No 300
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=26.43 E-value=50 Score=22.21 Aligned_cols=19 Identities=0% Similarity=-0.123 Sum_probs=14.1
Q ss_pred cccccccccccCCCceEEE
Q 040426 75 LSKVKRACEKCQNPEMYYS 93 (120)
Q Consensus 75 ~~~~~~~CpkCg~~ea~y~ 93 (120)
..++++.|.+||.+--.-|
T Consensus 88 m~RtEV~C~~Cg~HLGHVF 106 (146)
T 3hcg_A 88 MRRTEVRSHAADSHLGHVF 106 (146)
T ss_dssp EEEEEEEETTTCCEEEEEE
T ss_pred cEEEEEEeCCCCCccCcee
Confidence 3478899999988755444
No 301
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=26.39 E-value=44 Score=20.39 Aligned_cols=28 Identities=18% Similarity=0.477 Sum_probs=20.3
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeecc
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQ 38 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~~ 38 (120)
+.=|..|+.-|.+- ..|.|+ ||..+=..
T Consensus 25 ~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLA-TSFECR-CGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSS-SCEECT-TCCEECTT
T ss_pred CccchhhCCeeccc-CCeEcC-CCCEeccc
Confidence 45788899877663 249997 99986543
No 302
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=26.37 E-value=55 Score=18.01 Aligned_cols=31 Identities=23% Similarity=0.453 Sum_probs=18.2
Q ss_pred CCCCCCCCcccCccCCCcccccCCcEEeCCCCCeee
Q 040426 1 MADPLGRDFLFCKFCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 1 ~~~~~~~~~~FCp~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
|+-+.......|..||. .....|..|.....
T Consensus 5 ~~~~~~~~~~~C~~C~~-----~~~~~Cs~C~~v~Y 35 (60)
T 2od1_A 5 SGSPNSDSSESCWNCGR-----KASETCSGCNTARY 35 (60)
T ss_dssp ------CCSSCCTTTSS-----CCCEECTTTSCCEE
T ss_pred ccCcCCCCCCccccCCC-----cccccCCCCCCeee
Confidence 44455666788999987 13488888887543
No 303
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=26.35 E-value=29 Score=25.83 Aligned_cols=30 Identities=20% Similarity=0.682 Sum_probs=17.9
Q ss_pred ccccccCCCceEEEEeecccCCCCceEEEEcCCCCc
Q 040426 80 RACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGH 115 (120)
Q Consensus 80 ~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~ 115 (120)
.+||.||..-..-.+ ++. .-.-|-|..|.+
T Consensus 252 ~pC~~CGt~I~~~~~-----g~~-gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRF-----GEN-SRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECS-----STT-CCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEe-----cCC-CCCEEECCCccc
Confidence 389999986543222 221 233477998864
No 304
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.09 E-value=5.7 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred cccccccCCCceEE--EEeecccCCCCceEEEEcCCCCceec
Q 040426 79 KRACEKCQNPEMYY--STRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 79 ~~~CpkCg~~ea~y--~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
...|+.||..-... +...+|.- .+ ..-|.|..|+..|.
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h-~~-~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIH-TG-IKPYECNICAKRFM 76 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTT-CC-CCCEECSSSCCEES
T ss_pred CccCCCCCcccCCHHHHHHHHHHc-CC-CCCeeCCCCcchhc
Confidence 36799998632111 11112221 11 12399999998875
No 305
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.08 E-value=16 Score=17.99 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2epz_A 13 FDCIDCGKAFS 23 (46)
T ss_dssp BCCTTTCCCBS
T ss_pred eECCCCCceeC
Confidence 66666666553
No 306
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.99 E-value=14 Score=18.23 Aligned_cols=11 Identities=27% Similarity=0.905 Sum_probs=6.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2emz_A 13 FKCNECGKGFG 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred eECCCCCcccC
Confidence 56666665543
No 307
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=25.89 E-value=31 Score=18.68 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=7.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 50 ~~C~~C~~~f~ 60 (73)
T 1f2i_G 50 FQCRICMRNFS 60 (73)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCchhC
Confidence 77777776654
No 308
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=25.88 E-value=17 Score=29.96 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=15.0
Q ss_pred cccccCCCceEEEEeecccCCCCceEEEEcC---CCCce
Q 040426 81 ACEKCQNPEMYYSTRQTRSADEGQTTYYICP---RCGHR 116 (120)
Q Consensus 81 ~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~---~C~~~ 116 (120)
.||+||...+. .|....| ..||-|. +|++.
T Consensus 574 ~CP~Cg~g~l~-----~r~~k~G-~~f~gCs~yp~C~f~ 606 (633)
T 2gai_A 574 FYLKCECGKTR-----SVKNDEI-AVIDDGKIFLGRKDS 606 (633)
T ss_dssp EEEECSSSCCE-----ECCTTSB-CEEETTEEEC-----
T ss_pred cCcccCCCcce-----eecccCC-CeEEeCCCCcCCCCe
Confidence 49999954443 2333333 2599996 48876
No 309
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.87 E-value=14 Score=18.26 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=6.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2eom_A 13 HRCSDCGKFFL 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred cCCCCCCCeeC
Confidence 55666665543
No 310
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=25.84 E-value=26 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=18.6
Q ss_pred cccccccCCCceEEEEeecccCCCCceEEEEcCCCCceec
Q 040426 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRCQ 118 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w~ 118 (120)
-..|| ||.. |++...-..+| +...|..|....+
T Consensus 112 ~~~Cr-CG~~----f~i~~~~l~~~--~~v~C~sCSl~~~ 144 (155)
T 2l6l_A 112 YLSCR-CGGK----YSVSKDEAEEV--SLISCDTCSLIIE 144 (155)
T ss_dssp EEECS-SSCE----EEEETTHHHHC--CEEECSSSSCEEE
T ss_pred EEcCC-CCCe----EEecHHHhCCC--CEEECCCCceEEE
Confidence 45687 8843 33332222234 6688888876543
No 311
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.69 E-value=16 Score=18.03 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2elz_A 13 YKCEDCGKGYN 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eeCcccCchhC
Confidence 56666665543
No 312
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.66 E-value=16 Score=17.81 Aligned_cols=11 Identities=27% Similarity=0.954 Sum_probs=6.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 11 ~~C~~C~k~f~ 21 (43)
T 2yrm_A 11 FFCNECDCRFS 21 (43)
T ss_dssp BCCSSSCCCBS
T ss_pred EECCCCCCeeC
Confidence 66666666553
No 313
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=25.63 E-value=22 Score=25.51 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=8.6
Q ss_pred EEeCCCCCeeecc
Q 040426 26 VVCSSCKFKKNVQ 38 (120)
Q Consensus 26 ~~C~~C~~~~~~~ 38 (120)
+.|.+|.-....+
T Consensus 135 lyCP~C~DvY~P~ 147 (215)
T 4dgl_A 135 LYCPKCMDVYTPK 147 (215)
T ss_dssp EECTTTCCEECCS
T ss_pred EeCCCcccccCCC
Confidence 7777777666543
No 314
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.60 E-value=16 Score=17.93 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2ytn_A 13 YKCNECGKVFT 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCCeeC
Confidence 56666665543
No 315
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.49 E-value=38 Score=19.59 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=22.3
Q ss_pred CCCCcccCccCCCcccccC-----Cc------EEeCCCCCeee
Q 040426 5 LGRDFLFCKFCGTMLRMES-----NH------VVCSSCKFKKN 36 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~-----~~------~~C~~C~~~~~ 36 (120)
...+...|+.|+..++..+ +. |.|..|+..-.
T Consensus 11 ~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~ 53 (82)
T 2co8_A 11 EAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLW 53 (82)
T ss_dssp CCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCC
T ss_pred CCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcC
Confidence 3456678999999886542 11 88888886543
No 316
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=25.47 E-value=11 Score=28.04 Aligned_cols=28 Identities=18% Similarity=0.505 Sum_probs=22.1
Q ss_pred cccCccCCCcccccC--Cc-EEeCCCCCeee
Q 040426 9 FLFCKFCGTMLRMES--NH-VVCSSCKFKKN 36 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~--~~-~~C~~C~~~~~ 36 (120)
+.=||.|+.+||.+. .. .+|+.|++...
T Consensus 30 ~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r 60 (285)
T 2f9i_B 30 MTKCPKCKKIMYTKELAENLNVCFNCDHHIA 60 (285)
T ss_dssp EEECTTTCCEEEHHHHHHTTTBCTTTCCBCC
T ss_pred HHhhHhhCCccchhhhHHhcCcCCCCCCCCC
Confidence 456999999999863 22 89999999544
No 317
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.44 E-value=44 Score=19.32 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=19.3
Q ss_pred cccCccCCCcccccCCcEEeCCCCCeeecc
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKKNVQ 38 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~~~~ 38 (120)
..=|..|+..|.+. .|.|+ ||..+=..
T Consensus 15 ~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~ 41 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT--GFMCR-CGTTFCGS 41 (64)
T ss_dssp CCCCTTTCCCCCTT--CEECS-SSCEECTT
T ss_pred CCcChhhCCccCcc--CEEee-cCCEeccc
Confidence 45688898876654 59995 99886543
No 318
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=25.17 E-value=27 Score=28.63 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=20.3
Q ss_pred cccCccCCCcccccCCc--EEeCC---CCCe
Q 040426 9 FLFCKFCGTMLRMESNH--VVCSS---CKFK 34 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~--~~C~~---C~~~ 34 (120)
+..||.||+-|...++. +.|.+ |+.+
T Consensus 405 P~~CP~Cgs~~~~~~~~~~~rC~n~~~Cpaq 435 (586)
T 4glx_A 405 PTHCPVCGSDVERVEGEAVARCTGGLICGAQ 435 (586)
T ss_dssp CSBCTTTCCBEECCTTCSCCEESCGGGCHHH
T ss_pred CCcCCCCCCchhhhhcccccEeCCCcCcHHH
Confidence 56899999998766554 89975 8765
No 319
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.08 E-value=17 Score=17.92 Aligned_cols=11 Identities=18% Similarity=0.727 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2en9_A 13 FKCNECKKTFT 23 (46)
T ss_dssp CBCTTTCCBCS
T ss_pred EECCccCcccC
Confidence 56666665543
No 320
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.98 E-value=13 Score=18.23 Aligned_cols=11 Identities=36% Similarity=0.984 Sum_probs=6.3
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|+
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep1_A 13 YECSDCGKSFI 23 (46)
T ss_dssp SCCSSSCCCCS
T ss_pred cCCCCCCchhC
Confidence 55666665543
No 321
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.90 E-value=17 Score=17.93 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytq_A 13 YGCSECGKAFS 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred cCCCccChhhC
Confidence 56666665553
No 322
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.81 E-value=51 Score=17.53 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=8.4
Q ss_pred EEEcC-CCCceec
Q 040426 107 YYICP-RCGHRCQ 118 (120)
Q Consensus 107 fY~C~-~C~~~w~ 118 (120)
-|.|. .||..+.
T Consensus 36 p~~C~~~C~k~f~ 48 (66)
T 2eod_A 36 PVACPNQCGVGTV 48 (66)
T ss_dssp EEECTTCCSCCEE
T ss_pred CccCCcccCcccc
Confidence 47888 7877654
No 323
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.79 E-value=26 Score=20.04 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=7.7
Q ss_pred cccccccCCC
Q 040426 79 KRACEKCQNP 88 (120)
Q Consensus 79 ~~~CpkCg~~ 88 (120)
...||.||..
T Consensus 18 k~~CP~CG~~ 27 (60)
T 2apo_B 18 KEICPKCGEK 27 (60)
T ss_dssp SSBCSSSCSB
T ss_pred cccCcCCCCc
Confidence 5669999875
No 324
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=24.69 E-value=20 Score=15.82 Aligned_cols=11 Identities=27% Similarity=0.761 Sum_probs=6.9
Q ss_pred EEcC--CCCceec
Q 040426 108 YICP--RCGHRCQ 118 (120)
Q Consensus 108 Y~C~--~C~~~w~ 118 (120)
|.|. .||..|.
T Consensus 4 ~~C~~~~C~k~f~ 16 (32)
T 1zfd_A 4 YSCDHPGCDKAFV 16 (32)
T ss_dssp BCCCCTTCCCCBS
T ss_pred CcCcCCCCCCccC
Confidence 5666 6776654
No 325
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=24.66 E-value=17 Score=17.90 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=6.7
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2emk_A 13 YECKECGKAFS 23 (46)
T ss_dssp CBCSSSCCBCS
T ss_pred eECCCCCchhC
Confidence 66666666553
No 326
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.58 E-value=16 Score=17.85 Aligned_cols=11 Identities=36% Similarity=1.035 Sum_probs=6.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eq4_A 13 YNCKECGKSFS 23 (46)
T ss_dssp CCBTTTTBCCS
T ss_pred eECCCCCCccC
Confidence 66666666553
No 327
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}
Probab=24.54 E-value=35 Score=22.36 Aligned_cols=14 Identities=14% Similarity=0.534 Sum_probs=13.2
Q ss_pred EEeCCCCCeeeccc
Q 040426 26 VVCSSCKFKKNVQD 39 (120)
Q Consensus 26 ~~C~~C~~~~~~~~ 39 (120)
++|+.||..+++.+
T Consensus 100 L~Cp~cgr~ypI~~ 113 (125)
T 3q87_A 100 LRCDMCGLIYPIKG 113 (125)
T ss_dssp EEETTTCCEEEEET
T ss_pred EECCCCCCEeeccC
Confidence 99999999999877
No 328
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.14 E-value=16 Score=17.94 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..||..|.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2eoq_A 13 FKCDICGKSFC 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred cCCCcCCchhC
Confidence 56666665553
No 329
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.02 E-value=13 Score=18.32 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=5.5
Q ss_pred EEcCCCCcee
Q 040426 108 YICPRCGHRC 117 (120)
Q Consensus 108 Y~C~~C~~~w 117 (120)
|.|..|+..|
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2yti_A 13 YKCNECGKVF 22 (46)
T ss_dssp TCCSSSCCCC
T ss_pred eECCCCCccc
Confidence 5555555544
No 330
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=24.02 E-value=18 Score=15.84 Aligned_cols=11 Identities=36% Similarity=1.210 Sum_probs=7.1
Q ss_pred EEcC--CCCceec
Q 040426 108 YICP--RCGHRCQ 118 (120)
Q Consensus 108 Y~C~--~C~~~w~ 118 (120)
|.|. .||..+.
T Consensus 3 ~~C~~~~C~k~f~ 15 (31)
T 1sp2_A 3 FMCTWSYCGKRFT 15 (31)
T ss_dssp CBCCSTTCCCBCS
T ss_pred cCCcCCCCCcccC
Confidence 5676 6777654
No 331
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=23.34 E-value=37 Score=19.32 Aligned_cols=26 Identities=31% Similarity=0.713 Sum_probs=16.5
Q ss_pred cccccccCCCceEEEEeecccCCCCceEEEEcCCCCcee
Q 040426 79 KRACEKCQNPEMYYSTRQTRSADEGQTTYYICPRCGHRC 117 (120)
Q Consensus 79 ~~~CpkCg~~ea~y~~~Q~RSADE~~T~fY~C~~C~~~w 117 (120)
...|.-|+..+... --|+|++|+-++
T Consensus 11 ~~~C~vC~~~~~~~-------------akY~CPrC~~rY 36 (59)
T 1x4s_A 11 AGPCGFCPAGEVQP-------------ARYTCPRCNAPY 36 (59)
T ss_dssp CEEECSSCTTCCEE-------------ECEECTTTCCEE
T ss_pred CCcCcCCCCCcCCC-------------ccccCcCCCCCc
Confidence 45688887644322 248899888653
No 332
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=23.01 E-value=43 Score=21.06 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=17.4
Q ss_pred cccccccccCCCceE--------EEEeecccCCCC
Q 040426 77 KVKRACEKCQNPEMY--------YSTRQTRSADEG 103 (120)
Q Consensus 77 ~~~~~CpkCg~~ea~--------y~~~Q~RSADE~ 103 (120)
-...+||+||....+ |.-+-+|-.|-|
T Consensus 50 fmhakcprcgaegsvsivetkngykylvirhpdgg 84 (131)
T 2x5c_A 50 FMHAKCPRCGAEGSVSIVETKNGYKYLVIRHPDGG 84 (131)
T ss_dssp CCEEECTTTSCEEEEEEEECTTSCEEEEEECTTSC
T ss_pred eeeccCCCCCCccceEEEEecCCcEEEEEECCCCC
Confidence 467899999987654 333445555544
No 333
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=22.96 E-value=40 Score=19.08 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=17.1
Q ss_pred ccCccCCCcccccCCcEEeCCCCCeeecccc
Q 040426 10 LFCKFCGTMLRMESNHVVCSSCKFKKNVQDV 40 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~~~C~~C~~~~~~~~~ 40 (120)
+=|-.|+-++..+ .|++|+... .+++
T Consensus 2 rAC~~C~~v~~~~----~CpnC~~~t-t~~~ 27 (59)
T 3lpe_B 2 RACLKCKYLTNDE----ICPICHSPT-SENW 27 (59)
T ss_dssp EEETTTCBEESSS----BCTTTCCBE-ESCE
T ss_pred cccccCCcccCCC----CCCCCCCCc-cCCE
Confidence 4588888665443 599999854 4444
No 334
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.84 E-value=13 Score=18.27 Aligned_cols=10 Identities=40% Similarity=1.138 Sum_probs=5.4
Q ss_pred EEcCCCCcee
Q 040426 108 YICPRCGHRC 117 (120)
Q Consensus 108 Y~C~~C~~~w 117 (120)
|.|..|+..+
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eq2_A 13 YQCNECGKAF 22 (46)
T ss_dssp SSCCSSCCCC
T ss_pred eECCCCCccc
Confidence 5555555544
No 335
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=22.73 E-value=18 Score=17.76 Aligned_cols=11 Identities=18% Similarity=0.621 Sum_probs=6.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..|.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2em0_A 13 WKCRECDMCFS 23 (46)
T ss_dssp CCCSSSCCCCS
T ss_pred eECCCCCcccC
Confidence 56666665543
No 336
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.68 E-value=38 Score=18.59 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.8
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 16 ~~C~~C~k~f~ 26 (77)
T 2ct1_A 16 YECYICHARFT 26 (77)
T ss_dssp EECTTTCCEES
T ss_pred eECCCcCchhC
Confidence 77777777664
No 337
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=22.45 E-value=42 Score=18.96 Aligned_cols=24 Identities=38% Similarity=0.740 Sum_probs=16.2
Q ss_pred cccCccCCCcccccCCcEEeCCCCC
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKF 33 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~ 33 (120)
-..|..||.--+-.. .-.|..|||
T Consensus 17 H~~CrRCG~~syH~q-K~~Ca~CGy 40 (57)
T 1vq8_1 17 HTKCRRCGEKSYHTK-KKVCSSCGF 40 (57)
T ss_dssp EEECTTTCSEEEETT-TTEETTTCT
T ss_pred cccccccCChhhhcc-ccccccccC
Confidence 446888887654432 278888888
No 338
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=22.44 E-value=66 Score=17.70 Aligned_cols=28 Identities=18% Similarity=0.401 Sum_probs=18.1
Q ss_pred CcccCccCCCcccccCCcEEeCCCCCee
Q 040426 8 DFLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 8 ~~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
...+||.|+........-+.|..|..=+
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~Wf 32 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWF 32 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEE
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCC
Confidence 4578999986532222228999997433
No 339
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=22.28 E-value=44 Score=15.36 Aligned_cols=11 Identities=36% Similarity=0.800 Sum_probs=8.2
Q ss_pred EEcC--CCCceec
Q 040426 108 YICP--RCGHRCQ 118 (120)
Q Consensus 108 Y~C~--~C~~~w~ 118 (120)
|.|. .||..|.
T Consensus 9 ~~C~~~~C~k~f~ 21 (37)
T 1va1_A 9 HICHIQGCGKVYG 21 (37)
T ss_dssp EECCSTTCCCEES
T ss_pred CCCCCCCCCCccC
Confidence 7887 5888765
No 340
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.14 E-value=15 Score=17.99 Aligned_cols=10 Identities=40% Similarity=1.132 Sum_probs=5.5
Q ss_pred EEcCCCCcee
Q 040426 108 YICPRCGHRC 117 (120)
Q Consensus 108 Y~C~~C~~~w 117 (120)
|.|..||..+
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytr_A 13 YKCNECGKAF 22 (46)
T ss_dssp TCCTTTCCCC
T ss_pred cCCCCCCCcc
Confidence 5555555544
No 341
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.08 E-value=63 Score=18.03 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=22.0
Q ss_pred CCCcccCccCCCcccccCC------c------EEeCCCCCeeec
Q 040426 6 GRDFLFCKFCGTMLRMESN------H------VVCSSCKFKKNV 37 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~------~------~~C~~C~~~~~~ 37 (120)
.....-|+.|+..+++.+. . |.|..|+..-..
T Consensus 8 ~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~ 51 (77)
T 1g47_A 8 ALASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPE 51 (77)
T ss_dssp CCCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGG
T ss_pred CCCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCC
Confidence 3445689999998875331 1 888888876543
No 342
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.07 E-value=40 Score=18.28 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=7.6
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
|.|..|++...
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 77777777654
No 343
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=22.02 E-value=41 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.752 Sum_probs=15.9
Q ss_pred cCCCcccccCCcEEeCCCCCe
Q 040426 14 FCGTMLRMESNHVVCSSCKFK 34 (120)
Q Consensus 14 ~CgnlL~~~~~~~~C~~C~~~ 34 (120)
.||.++...+-.|.|+.|..-
T Consensus 6 ~Cg~vf~~ge~~Y~C~~C~~d 26 (75)
T 3ny3_A 6 LCGRVFKVGEPTYSCRDCAVD 26 (75)
T ss_dssp CCCCBCCTTCEEEEETTTBSS
T ss_pred ccCCcccCCCEEEECccCCCC
Confidence 577777766666999999863
No 344
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.99 E-value=40 Score=18.07 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=7.6
Q ss_pred EEeCCCCCeee
Q 040426 26 VVCSSCKFKKN 36 (120)
Q Consensus 26 ~~C~~C~~~~~ 36 (120)
|.|..|++...
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 77777777654
No 345
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=21.87 E-value=53 Score=23.14 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=19.8
Q ss_pred ccCccCCCcccccCCcEEeCCCCCeeec
Q 040426 10 LFCKFCGTMLRMESNHVVCSSCKFKKNV 37 (120)
Q Consensus 10 ~FCp~CgnlL~~~~~~~~C~~C~~~~~~ 37 (120)
.-|..|+.-..+-.-+..||.||...-.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~ 192 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCG 192 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECT
T ss_pred CCCcCcCCCCCccccccccCCCcCEeCh
Confidence 4799998655544334999999987643
No 346
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.78 E-value=41 Score=18.46 Aligned_cols=12 Identities=25% Similarity=0.659 Sum_probs=8.9
Q ss_pred EEeCCCCCeeec
Q 040426 26 VVCSSCKFKKNV 37 (120)
Q Consensus 26 ~~C~~C~~~~~~ 37 (120)
|.|..|+.....
T Consensus 8 ~~C~~C~k~f~~ 19 (78)
T 2d9h_A 8 LQCEICGFTCRQ 19 (78)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCCeeCC
Confidence 888888876643
No 347
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=21.76 E-value=48 Score=17.62 Aligned_cols=13 Identities=31% Similarity=1.014 Sum_probs=7.5
Q ss_pred CceEEEEcCCCCc
Q 040426 103 GQTTYYICPRCGH 115 (120)
Q Consensus 103 ~~T~fY~C~~C~~ 115 (120)
..+.|-+|..||.
T Consensus 13 ~~~~YRvC~~Cgk 25 (44)
T 2lo3_A 13 KPIQYRVCEKCGK 25 (44)
T ss_dssp CCCCEEECTTTCC
T ss_pred ccccchhhcccCC
Confidence 4555556666664
No 348
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.76 E-value=62 Score=18.60 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCCcccCccCCCcccccCC-----c------EEeCCCCCee
Q 040426 6 GRDFLFCKFCGTMLRMESN-----H------VVCSSCKFKK 35 (120)
Q Consensus 6 ~~~~~FCp~CgnlL~~~~~-----~------~~C~~C~~~~ 35 (120)
..+...|+.|+..++..+. . |.|..|+...
T Consensus 12 ~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L 52 (80)
T 2dj7_A 12 IRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVIL 52 (80)
T ss_dssp CSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCc
Confidence 4556789999998875431 1 8899998654
No 349
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=21.51 E-value=32 Score=28.68 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=18.4
Q ss_pred cccCccCCCcccccCCc-EEeCC--CCCe
Q 040426 9 FLFCKFCGTMLRMESNH-VVCSS--CKFK 34 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~-~~C~~--C~~~ 34 (120)
+..||.||+-| .+... +.|.+ |+.+
T Consensus 403 P~~CP~Cgs~l-~~g~~~~~C~n~~Cpaq 430 (667)
T 1dgs_A 403 PEACPECGHRL-VKEGKVHRCPNPLCPAK 430 (667)
T ss_dssp CSBCTTTCCBC-EEETTEEECCCTTCGGG
T ss_pred CCCCCCCCCCc-cCCCeEEEeCCCCChhH
Confidence 56899999998 33323 89987 7754
No 350
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=21.39 E-value=83 Score=21.04 Aligned_cols=19 Identities=11% Similarity=0.284 Sum_probs=14.1
Q ss_pred cccccccccccCCCceEEE
Q 040426 75 LSKVKRACEKCQNPEMYYS 93 (120)
Q Consensus 75 ~~~~~~~CpkCg~~ea~y~ 93 (120)
+.++++.|.+||..--.-|
T Consensus 89 m~RtEV~C~~Cg~HLGHVF 107 (143)
T 2l1u_A 89 CPRMEVVCKQCEAHLGHVF 107 (143)
T ss_dssp SCEEEEEESSSCCCCEEEE
T ss_pred ceEEEEEECCCCCcCCccc
Confidence 3578999999988755444
No 351
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=21.38 E-value=42 Score=18.22 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=8.5
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..+.
T Consensus 46 ~~C~~C~k~f~ 56 (74)
T 2lce_A 46 YRCNICGAQFN 56 (74)
T ss_dssp EECTTTCCEES
T ss_pred EECCCCCchhC
Confidence 88888887764
No 352
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=21.36 E-value=1.2e+02 Score=16.92 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCCCCcccCcc--CCCcccccCC------cEEeCCCCCeeeccc
Q 040426 4 PLGRDFLFCKF--CGTMLRMESN------HVVCSSCKFKKNVQD 39 (120)
Q Consensus 4 ~~~~~~~FCp~--CgnlL~~~~~------~~~C~~C~~~~~~~~ 39 (120)
....++.-|.. |...|-|--. .|.|.-|+...+...
T Consensus 4 ~~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp SSCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCS
T ss_pred cCCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCH
Confidence 34556788988 9999977631 299999999887655
No 353
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.26 E-value=47 Score=15.16 Aligned_cols=11 Identities=36% Similarity=1.262 Sum_probs=8.4
Q ss_pred EEcC--CCCceec
Q 040426 108 YICP--RCGHRCQ 118 (120)
Q Consensus 108 Y~C~--~C~~~w~ 118 (120)
|.|. .|+..+.
T Consensus 7 ~~C~~~~C~k~f~ 19 (38)
T 1bhi_A 7 FLCTAPGCGQRFT 19 (38)
T ss_dssp EECCCTTTCCEES
T ss_pred eECCCCCCCcccC
Confidence 7888 5888765
No 354
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=16 Score=18.02 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=6.1
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|.|..|+..++
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ytm_A 13 YKCMECGKAFG 23 (46)
T ss_dssp SSBTTTTBCCS
T ss_pred cCCCCCCchhC
Confidence 55666665543
No 355
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.07 E-value=41 Score=19.19 Aligned_cols=31 Identities=23% Similarity=0.481 Sum_probs=21.3
Q ss_pred CCCCcccCccCCCcccccC----Cc------EEeCCCCCee
Q 040426 5 LGRDFLFCKFCGTMLRMES----NH------VVCSSCKFKK 35 (120)
Q Consensus 5 ~~~~~~FCp~CgnlL~~~~----~~------~~C~~C~~~~ 35 (120)
......-|+.|+..++.+. +. |.|..|+...
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L 51 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNL 51 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCH
T ss_pred CCCCCCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCC
Confidence 4455678999999877542 11 7788887664
No 356
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=20.66 E-value=47 Score=20.02 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=15.2
Q ss_pred cCCCcccccCCcEEeCCCCC
Q 040426 14 FCGTMLRMESNHVVCSSCKF 33 (120)
Q Consensus 14 ~CgnlL~~~~~~~~C~~C~~ 33 (120)
.||.++...+..|.|+.|+.
T Consensus 10 ~Cg~vf~~ge~~Y~C~~C~~ 29 (82)
T 3nis_A 10 NCGRKFKIGEPLYRCHECGC 29 (82)
T ss_dssp CCCCBCCTTCEEEEETTTBS
T ss_pred CCCCcccCCCEEEEeeccCC
Confidence 57777776665699999986
No 357
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.56 E-value=50 Score=21.31 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=18.5
Q ss_pred cccCccCCCcccccCCcEEeCCCCCee
Q 040426 9 FLFCKFCGTMLRMESNHVVCSSCKFKK 35 (120)
Q Consensus 9 ~~FCp~CgnlL~~~~~~~~C~~C~~~~ 35 (120)
...|..|+.-..+-.-+-.||.||...
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred cCcccCcCCccccccccccCCCCCCee
Confidence 457888887654433338999999874
No 358
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.42 E-value=23 Score=20.14 Aligned_cols=11 Identities=27% Similarity=0.637 Sum_probs=6.6
Q ss_pred EEcCCCCceec
Q 040426 108 YICPRCGHRCQ 118 (120)
Q Consensus 108 Y~C~~C~~~w~ 118 (120)
|+|..|++.|+
T Consensus 14 y~C~~CgK~F~ 24 (66)
T 2epp_A 14 LPCGLCGKVFT 24 (66)
T ss_dssp CCCTTTCCCCS
T ss_pred cCCCCCCCccC
Confidence 56666666553
No 359
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=20.40 E-value=26 Score=19.11 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=5.8
Q ss_pred ccCccCCCcccc
Q 040426 10 LFCKFCGTMLRM 21 (120)
Q Consensus 10 ~FCp~CgnlL~~ 21 (120)
.-|+.||..+.+
T Consensus 19 ~~C~~CG~~i~~ 30 (49)
T 2l8e_A 19 LKCEYCGKYAPA 30 (49)
T ss_dssp EECTTTCCEEEG
T ss_pred CcChhccCcccc
Confidence 345555554443
No 360
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.15 E-value=54 Score=17.30 Aligned_cols=24 Identities=25% Similarity=0.625 Sum_probs=16.1
Q ss_pred cCc--cCCCcccccCCcEEeCCCCCeee
Q 040426 11 FCK--FCGTMLRMESNHVVCSSCKFKKN 36 (120)
Q Consensus 11 FCp--~CgnlL~~~~~~~~C~~C~~~~~ 36 (120)
-|| .||++-+... ..|..|+...+
T Consensus 16 ~C~~~~C~~~Nfa~R--~~C~~C~~pr~ 41 (45)
T 1n0z_A 16 ICPDKKCGNVNFARR--TSCDRCGREKT 41 (45)
T ss_dssp BCSSTTTCCBCCSSC--SBCSSSCCBCC
T ss_pred CCCCCCCCCEEcccc--ccccccCCcCC
Confidence 677 7888766654 46777776543
Done!