BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040427
(329 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 457 bits (1176), Expect = e-129, Method: Compositional matrix adjust.
Identities = 221/329 (67%), Positives = 258/329 (78%), Gaps = 5/329 (1%)
Query: 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEK 61
PS+ +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWEAL DE+
Sbjct: 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDER 125
Query: 62 HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121
HF++HVLAFFAASDGIV ENL RF EVQV EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 126 HFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYI 185
Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIF 180
KD E+ LF+AIET+PCV KKA WAL WI D T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 186 KDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 245
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
WLKKRGLMPGLTFSNELISRDEGLHCDFACL++ L K +E+RV+ ++ AV IE+EF+
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305
Query: 241 CDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEK 300
+ALP L+GMN LM QYIEFVADR V NPFD+ME ISL+GKTNFFEK
Sbjct: 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEK 365
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
RVGEYQ+ VMS N + F +D DF
Sbjct: 366 RVGEYQRMGVMS----NSTENSFTLDADF 390
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit R2
Length = 332
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/329 (66%), Positives = 256/329 (77%), Gaps = 5/329 (1%)
Query: 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEK 61
P + +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWE+L +E+
Sbjct: 8 PGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEER 67
Query: 62 HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121
+F++HVLAFFAASDGIV ENL RF EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 68 YFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYI 127
Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIF 180
KD E+ LF+AIET+PCV KKA WAL WI D T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 128 KDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 187
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
WLKKRG MPGLTFSNELISRDEGLHCDFACL++ L K SEERV+ ++ AV IE+EF+
Sbjct: 188 WLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFL 247
Query: 241 CDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEK 300
+ALP L+GMN LM QYIEFVADR V NPFD+ME ISL+GKTNFFEK
Sbjct: 248 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEK 307
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
RVGEYQ+ VMSS N F +D DF
Sbjct: 308 RVGEYQRMGVMSSPTENS----FTLDADF 332
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2
pdb|3HF1|B Chain B, Crystal Structure Of Human P53r2
Length = 351
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 214/325 (65%), Positives = 252/325 (77%), Gaps = 5/325 (1%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
EEPLL + RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW L ADEK+F++
Sbjct: 31 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 90
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
H+LAFFAASDGIV ENL RF EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D
Sbjct: 91 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 150
Query: 126 EKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF+AIET+P V KKA WAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 151 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 210
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
RGLMPGLTFSNELISRDEGLHCDFACL++ L K SEERV+ ++ +AV+IE+EF+ +AL
Sbjct: 211 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 270
Query: 245 PCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEKRVGE 304
P L+GMN LM QYIEFVADR NPFD+ME ISL+GKTNFFEKRV E
Sbjct: 271 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 330
Query: 305 YQKASVMSSLNGNGGNHVFKIDEDF 329
YQ+ +VM+ N VF +D DF
Sbjct: 331 YQRFAVMAETTDN----VFTLDADF 351
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 427 bits (1097), Expect = e-120, Method: Compositional matrix adjust.
Identities = 199/323 (61%), Positives = 242/323 (74%), Gaps = 4/323 (1%)
Query: 7 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTH 66
E +L +RF + PI YP++W YKKAEASFWTAEE+DLS DL+ +E L +EKHF+ H
Sbjct: 31 EKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKH 90
Query: 67 VLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126
VLAFFAASDGIVLENLA +F+ EV++ EA+ FY FQIA+ENIHSE YSLL++ YIKD E
Sbjct: 91 VLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKE 150
Query: 127 KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
+ LFHAIE +P + KA WA WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+
Sbjct: 151 RLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN 210
Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPC 246
+ GLTFSNELISRDEGLH DF CL+YSLL KL E V+ +VKEAVE+ER F+C++LPC
Sbjct: 211 KLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPC 270
Query: 247 ALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEKRVGEYQ 306
L+GMN LMSQYIEFVADR NPF+WM+LISLQGKTNFFEKRV +YQ
Sbjct: 271 DLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQ 330
Query: 307 KASVMSSLNGNGGNHVFKIDEDF 329
K+ VM+ VF ++ DF
Sbjct: 331 KSGVMAQ----RKEQVFSLNTDF 349
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B
pdb|2VUX|B Chain B, Human Ribonucleotide Reductase, Subunit M2 B
Length = 326
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/292 (67%), Positives = 231/292 (79%), Gaps = 1/292 (0%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
EEPLL + RF +FPIQYP IW+MYK+A+ASFWTAEEVDLS+DL HW L ADEK+F++
Sbjct: 35 EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 94
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
H+LAFFAASDGIV ENL RF EVQV EAR FYGFQI IEN+HSEMYSLL++TYI+D
Sbjct: 95 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 154
Query: 126 EKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF+AIET+P V KKA WAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 155 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 214
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
RGLMPGLTFSNELISRDEGLHCDFACL++ L K SEERV+ ++ +AV+IE+EF+ +AL
Sbjct: 215 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 274
Query: 245 PCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTN 296
P L+GMN LM QYIEFVADR NPFD+ME ISL+GKTN
Sbjct: 275 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|B Chain B, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|C Chain C, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMQ|D Chain D, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer
From Saccharomyces Cerevisiae
Length = 399
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 241/327 (73%), Gaps = 5/327 (1%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFV 64
EEPLL + +R +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+ W + +E+ F+
Sbjct: 75 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 134
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
+ VLAFFAASDGIV ENL F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD
Sbjct: 135 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 194
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF+AI T+P + +KA WAL WI D F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 195 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 254
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+ K V+ +V EAVEIE+ + DA
Sbjct: 255 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 314
Query: 244 LPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEKRVG 303
LP AL+GMN +LM+QY+EFVADR V NPFD+ME ISL GKTNFFEKRV
Sbjct: 315 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVS 374
Query: 304 EYQKASVMS-SLNGNGGNHVFKIDEDF 329
+YQKA VMS S G F +EDF
Sbjct: 375 DYQKAGVMSKSTKQEAG--AFTFNEDF 399
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/327 (60%), Positives = 241/327 (73%), Gaps = 5/327 (1%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFV 64
EEPLL + +R +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+ W + +E+ F+
Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 154
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
+ VLAFFAASDGIV ENL F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD
Sbjct: 155 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 214
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF+AI T+P + +KA WAL WI D F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 215 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 274
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+ K V+ +V EAVEIE+ + DA
Sbjct: 275 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 334
Query: 244 LPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEKRVG 303
LP AL+GMN +LM+QY+EFVADR V NPFD+ME ISL GKTNFFEKRV
Sbjct: 335 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVS 394
Query: 304 EYQKASVMS-SLNGNGGNHVFKIDEDF 329
+YQKA VMS S G F +EDF
Sbjct: 395 DYQKAGVMSKSTKQEAG--AFTFNEDF 419
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust.
Identities = 191/285 (67%), Positives = 226/285 (79%), Gaps = 1/285 (0%)
Query: 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKH 62
+ +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWE+L +E++
Sbjct: 2 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 61
Query: 63 FVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122
F++HVLAFFAASDGIV ENL RF EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIK
Sbjct: 62 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK 121
Query: 123 DSDEKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFW 181
D E+ LF+AIET+PCV KKA WAL WI D T+ ER++AFA VEGIFFSGSF +IFW
Sbjct: 122 DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 181
Query: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241
LKKRGLMPGLTFSNELISRDEGLHCDFACL++ L K SEERV+ ++ AV IE+EF+
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLT 241
Query: 242 DALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWM 286
+ALP L+GMN LM QYIEFVADR V NPFD+M
Sbjct: 242 EALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
pdb|4DJN|B Chain B, Crystal Structure Of A Ribonucleotide Reductase M2 B
(Rnrr2) From Homo Sapiens At 2.20 A Resolution
Length = 311
Score = 390 bits (1003), Expect = e-109, Method: Compositional matrix adjust.
Identities = 191/292 (65%), Positives = 223/292 (76%), Gaps = 1/292 (0%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
EEPLL + RF +FPIQYP IW+ YK+A+ASFWTAEEVDLS+DL HW L ADEK+F++
Sbjct: 20 EEPLLRKSSRRFVIFPIQYPDIWKXYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 79
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
H+LAFFAASDGIV ENL RF EVQV EAR FYGFQI IEN+HSE YSLL++TYI+D
Sbjct: 80 HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEXYSLLIDTYIRDPK 139
Query: 126 EKNRLFHAIETVPCVAKKATWALNWI-DGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
++ LF+AIET P V KKA WAL WI D TF ER++AFA VEG+FFSGSF AIFWLKK
Sbjct: 140 KREFLFNAIETXPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 199
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
RGL PGLTFSNELISRDEGLHCDFACL + L K SEERV+ ++ +AV+IE+EF+ +AL
Sbjct: 200 RGLXPGLTFSNELISRDEGLHCDFACLXFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 259
Query: 245 PCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTN 296
P L+G N L QYIEFVADR NPFD+ E ISL+GKTN
Sbjct: 260 PVGLIGXNCILXKQYIEFVADRLLVELGFSKVFQAENPFDFXENISLEGKTN 311
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
pdb|2O1Z|B Chain B, Plasmodium Vivax Ribonucleotide Reductase Subunit R2
(Pv086155)
Length = 311
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 178/282 (63%), Positives = 217/282 (76%)
Query: 7 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTH 66
E +L+ DRF ++PI YP +W+ YKKAEASFWTAEE+DLS DL+ +E L +EKHF+ H
Sbjct: 30 EKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKH 89
Query: 67 VLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126
VLAFFAASDGIVLENLA +F+ +V++ EA+ FY FQIA+ENIHSE YSLL++ YIKD E
Sbjct: 90 VLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKE 149
Query: 127 KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
+ LFHAIE +P V KA WA WI+ + +FAER++A ACVEGI FSGSFCAIFW KK+
Sbjct: 150 RMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQN 209
Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPC 246
+ GLTFSNELISRDEGLH DF CL+YSLL KL EE V+ +VKEAVE+ER F+C++LPC
Sbjct: 210 KLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPC 269
Query: 247 ALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMEL 288
L+GMN LMSQYIEFVADR NPF+WM+L
Sbjct: 270 DLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDL 311
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer
pdb|1SMS|A Chain A, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
pdb|1SMS|B Chain B, Structure Of The Ribonucleotide Reductase Rnr4 Homodimer
From Saccharomyces Cerevisiae
Length = 345
Score = 274 bits (700), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 203/309 (65%), Gaps = 4/309 (1%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
+E LL N RF MFPI+Y +IW YKK EASFWTAEE++L++D ++ LT D+K ++
Sbjct: 24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIG 83
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
++LA +SD +V + L F ++Q E ++FYGFQI +ENI+SE+YS++++ + KD
Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDP- 142
Query: 126 EKN-RLFHAIETVPCVAKKATWALNWIDGSET-FAERLIAFACVEGIFFSGSFCAIFWLK 183
KN LF I +P V KA + WI ++ +AERL+AFA EGIF +G++ ++FWL
Sbjct: 143 -KNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLT 201
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
+ +MPGL +N I RD G + DF+CLL++ LRTK + + ++ ++ EAVEIE+E+ ++
Sbjct: 202 DKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNS 261
Query: 244 LPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWMELISLQGKTNFFEKRVG 303
LP GM+ + + YIEFVAD NPF++ME ++ GKT FFEK+V
Sbjct: 262 LPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVS 321
Query: 304 EYQKASVMS 312
+YQKAS MS
Sbjct: 322 DYQKASDMS 330
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide
Reductase R2 From Chlamydia Trachomatis
Length = 346
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/318 (26%), Positives = 147/318 (46%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +D+ W++ L+ DE+ + L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 77 IVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIET 136
+V N+ V EAR + Q E +H+ Y + E+ D E +F+A
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLYICESLGLDEKE---IFNAYNE 147
Query: 137 VPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K + + + ++G + F + L+ + + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLSEERVKALVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ T ++ + L+K AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 236 EREFVCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWM-ELISLQGK 294
E E+ D LP ++G+ + Y++ +ADR NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8F|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
1 - High Mn)
pdb|4D8G|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|B Chain B, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|C Chain C, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
pdb|4D8G|D Chain D, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE
2 - Low Mn)
Length = 366
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +D+ W++ L+ DE+ + L FF+ ++
Sbjct: 51 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 110
Query: 77 IVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIET 136
+V N+ V EAR + Q E +H+ + + E+ D E +F+A
Sbjct: 111 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNE 167
Query: 137 VPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K + + + ++G + F + L+ + + EGIFF F I
Sbjct: 168 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 227
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLSEERVKALVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ T ++ + L+K AV++
Sbjct: 228 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 287
Query: 236 EREFVCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWM-ELISLQGK 294
E E+ D LP ++G+ + Y++ +ADR NPF WM E I L +
Sbjct: 288 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 347
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 348 KNFFETRVIEYQHAASLT 365
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide
Reductase From Chlamydia Trachomatis
Length = 346
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 84/318 (26%), Positives = 147/318 (46%), Gaps = 27/318 (8%)
Query: 19 MFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFAASDG 76
+ PI+Y WE Y A+ W E+ + +D+ W++ L+ DE+ + L FF+ ++
Sbjct: 31 LVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAES 90
Query: 77 IVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIET 136
+V N+ V EAR + Q E +H+ + + E+ D E +F+A
Sbjct: 91 LVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFNAYNE 147
Query: 137 VPCVAKKATWAL-------------NWIDGSETFAERLIAFACV-EGIFFSGSFCAIFWL 182
+ K + + + ++G + F + L+ + + EGIFF F I
Sbjct: 148 RAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSF 207
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLSEERVKALVKEAVEI 235
++ M G+ + I RDE +H +F L + ++ T ++ + L+K AV++
Sbjct: 208 HRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDL 267
Query: 236 EREFVCDALPCALVGMNGELMSQYIEFVADRXXXXXXXXXXXXVANPFDWM-ELISLQGK 294
E E+ D LP ++G+ + Y++ +ADR NPF WM E I L +
Sbjct: 268 EIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKE 327
Query: 295 TNFFEKRVGEYQKASVMS 312
NFFE RV EYQ A+ ++
Sbjct: 328 KNFFETRVIEYQHAASLT 345
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|B Chain B, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
pdb|2RCC|C Chain C, Crystal Structure Of Putative Class I Ribonucleotide
Reductase (Np_241368.1) From Bacillus Halodurans At 1.90
A Resolution
Length = 346
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 137/310 (44%), Gaps = 29/310 (9%)
Query: 22 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLE- 80
+++ + +YK A+FWT E++ S D + + LT E+ ++ A D + +
Sbjct: 36 VRFSWAYPLYKNXLANFWTPFEINXSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDY 95
Query: 81 -NLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPC 139
A ++T+ +A + FQ E +H++ YS +L + + + + + +F +
Sbjct: 96 SXRAAEYLTDSSLAALXSVLSFQ---EVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDV 151
Query: 140 VAKKATWALNWIDGSE---------TFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPG 190
+ ++ + IDG E TF E ++ +EG+ F F + L +
Sbjct: 152 LKERNEFI---IDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKXVS 208
Query: 191 LTFSNELISRDEGLHCD-----FACLL--YSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
+ I+RDE LH F LL + L T+ ++ VK + +A ++E+++
Sbjct: 209 TSTXINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLXKAADLEKDWFRYI 268
Query: 244 LPCALVGMNGELMSQYIEFVADRXXXX--XXXXXXXXVANPFDWMELIS--LQGKTNFFE 299
+ + G+N E YI F+A++ NP W+ GK++FFE
Sbjct: 269 IGDKIPGINPEDXETYISFIANKRAVQLGXEKPYPEIKHNPXKWIRAYEDVNSGKSDFFE 328
Query: 300 KRVGEYQKAS 309
++ +Y K S
Sbjct: 329 QKSRQYAKVS 338
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1MRR|B Chain B, Substitution Of Manganese For Iron In Ribonucleotide
Reductase From Escherichia Coli. Spectroscopic And
Crystallographic Characterization
pdb|1RIB|A Chain A, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
pdb|1RIB|B Chain B, Structure And Function Of The Escherichia Coli
Ribonucleotide Reductase Protein R2
Length = 375
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 132/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIM|B Chain B, Dithionite Reduced E. Coli Ribonucleotide Reductase R2
Subunit, D84e Mutant
pdb|1PIU|A Chain A, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIU|B Chain B, Oxidized Ribonucleotide Reductase R2-d84e Mutant
Containing Oxo-bridged Diferric Cluster
pdb|1PIZ|A Chain A, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
pdb|1PIZ|B Chain B, Ribonucleotide Reductase R2 D84e Mutant Soaked With
Ferrous Ions At Neutral Ph
Length = 375
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 59/331 (17%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGR-----FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLET 119
L + +LE++ GR + + + E + E IHS Y+ ++
Sbjct: 74 ISNLKY-----QTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRN 128
Query: 120 YIKDSDEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER----- 160
+ D + +F I T + K+A ++ D G+ T +
Sbjct: 129 IVNDP---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVS 185
Query: 161 -----------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 209
L++ +E I F SF F +R LM G LI+RDE LH
Sbjct: 186 LRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGT 245
Query: 210 CLLYSLLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELM 256
+ +LLR+ + + + +E A + E+++ D L +++G+N +++
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDIL 304
Query: 257 SQYIEFVAD-RXXXXXXXXXXXXVANPFDWM 286
QY+E++ + R +NP W+
Sbjct: 305 CQYVEYITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1XIK|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1JPR|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JPR|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Nitric Oxide
pdb|1JQC|A Chain A, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1JQC|B Chain B, Mn Substituted Ribonucleotide Reductase R2 From E. Coli
Oxidized By Hydrogen Peroxide And Hydroxylamine
pdb|1MXR|A Chain A, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|1MXR|B Chain B, High Resolution Structure Of Ribonucleotide Reductase R2
From E. Coli In Its Oxidised (met) Form
pdb|3UUS|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|3UUS|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex
pdb|4ERM|E Chain E, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|F Chain F, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|G Chain G, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERM|H Chain H, Crystal Structure Of The Datp Inhibited E. Coli Class Ia
Ribonucleotide Reductase Complex At 4 Angstroms
Resolution
pdb|4ERP|E Chain E, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|F Chain F, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|G Chain G, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
pdb|4ERP|H Chain H, Crystal Structure Of A Gemcitabine-Diphosphate Inhibited
E. Coli Class Ia Ribonucleotide Reductase Complex
Length = 375
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1PIY|B Chain B, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At
Neutral Ph
pdb|1R65|A Chain A, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
pdb|1R65|B Chain B, Crystal Structure Of Ferrous Soaked Ribonucleotide
Reductase R2 Subunit (Wildtype) At Ph 5 From E. Coli
Length = 375
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
pdb|1PM2|B Chain B, Crystal Structure Of Manganese Substituted R2-d84e (d84e
Mutant Of The R2 Subunit Of E. Coli Ribonucleotide
Reductase)
Length = 339
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 59/331 (17%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGR-----FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLET 119
L + +LE++ GR + + + E + E IHS Y+ ++
Sbjct: 74 ISNLKY-----QTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRN 128
Query: 120 YIKDSDEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER----- 160
+ D + +F I T + K+A ++ D G+ T +
Sbjct: 129 IVNDP---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVS 185
Query: 161 -----------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 209
L++ +E I F SF F +R LM G LI+RDE LH
Sbjct: 186 LRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGT 245
Query: 210 CLLYSLLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELM 256
+ +LLR+ + + + +E A + E+++ D L +++G+N +++
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDIL 304
Query: 257 SQYIEFVAD-RXXXXXXXXXXXXVANPFDWM 286
QY+E++ + R +NP W+
Sbjct: 305 CQYVEYITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space
Group P6(1)22
Length = 340
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 15 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 74
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 75 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 134
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 135 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 191
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 192 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 251
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 252 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 310
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 311 YITNIRMQAVGLDLPFQTRSNPIPWI 336
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli
pdb|1AV8|B Chain B, Ribonucleotide Reductase R2 Subunit From E. Coli
Length = 340
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
pdb|1PFR|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain
Length = 340
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F +F F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
pdb|1YFD|B Chain B, Crystal Structure Of The Y122h Mutant Of Ribonucleotide
Reductase R2 Protein From E. Coli
Length = 375
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS ++ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSHTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
pdb|2AV8|B Chain B, Y122f Mutant Of Ribonucleotide Reductase From Escherichia
Coli
Length = 340
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS ++ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
pdb|1RNR|B Chain B, Autocatalytic Generation Of Dopa In The Engineered Protein
R2 F208y From Escherichia Coli Ribonucleotide Reductase
And Crystal Structure Of The Dopa-208 Protein
Length = 375
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
pdb|2XOF|B Chain B, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of
E. Coli
Length = 375
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/326 (22%), Positives = 130/326 (39%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS + ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSXTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ0|B Chain B, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH
FERROUS IONS At Neutral Ph
pdb|1PJ1|A Chain A, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
pdb|1PJ1|B Chain B, Ribonucleotide Reductase R2-D84eW48F SOAKED WITH FERROUS
Ions At Ph 5
Length = 375
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 59/331 (17%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + F+ EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGR-----FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLET 119
L + +LE++ GR + + + E + E IHS Y+ ++
Sbjct: 74 ISNLKY-----QTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRN 128
Query: 120 YIKDSDEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER----- 160
+ D + +F I T + K+A ++ D G+ T +
Sbjct: 129 IVNDP---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVS 185
Query: 161 -----------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 209
L++ +E I F SF F +R LM G LI+RDE LH
Sbjct: 186 LRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGT 245
Query: 210 CLLYSLLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELM 256
+ +LLR+ + + + +E A + E+++ D L +++G+N +++
Sbjct: 246 QHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDIL 304
Query: 257 SQYIEFVAD-RXXXXXXXXXXXXVANPFDWM 286
QY+E++ + R +NP W+
Sbjct: 305 CQYVEYITNIRMQAVGLDLPFNTRSNPIPWI 335
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
pdb|1RSV|A Chain A, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSV|B Chain B, Azide Complex Of The Diferrous E238a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS ++ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I F SF F +R LM G LI+RD LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
pdb|1RSR|B Chain B, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of
Ribonucleotide Reductase
Length = 375
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/326 (21%), Positives = 130/326 (39%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS ++ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRAYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant
E238a
Length = 375
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/326 (21%), Positives = 129/326 (39%), Gaps = 49/326 (15%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWE-MYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + Q I+E + +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS ++ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID--------------GSETFAER---------- 160
+ +F I T + K+A ++ D G+ T +
Sbjct: 134 ---SVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 161 ------LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
L++ +E I SF F +R LM G LI+RD LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRXYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLN 250
Query: 215 LLRTKLSEERVKALVKE-----------AVEIEREFVCDAL--PCALVGMNGELMSQYIE 261
LLR+ + + + +E A + E+++ D L +++G+N +++ QY+E
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDW-ADYLFRDGSMIGLNKDILCQYVE 309
Query: 262 FVAD-RXXXXXXXXXXXXVANPFDWM 286
++ + R +NP W+
Sbjct: 310 YITNIRMQAVGLDLPFQTRSNPIPWI 335
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|2R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium (Oxidized)
pdb|1R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|1R2F|B Chain B, Ribonucleotide Reductase R2f Protein From Salmonella
Typhimurium
pdb|2BQ1|I Chain I, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
pdb|2BQ1|J Chain J, Ribonucleotide Reductase Class 1b Holocomplex R1e,R2f From
Salmonella Typhimurium
Length = 319
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 6/202 (2%)
Query: 22 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81
IQ + E++ + ++FW E+V LS D+ W+ L+A E+ V D I +N
Sbjct: 14 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTI--QN 71
Query: 82 LAG--RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPC 139
+AG M + A +E +H+ YS + T + + E + + E P
Sbjct: 72 IAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQ-TKEVDAAYAWSEENPP 130
Query: 140 VAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS 199
+ +KA L E ++ IA +E F F + RG + LI
Sbjct: 131 LQRKAQIILAHYVSDEPLKKK-IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLII 189
Query: 200 RDEGLHCDFACLLYSLLRTKLS 221
RDE +H + Y + KLS
Sbjct: 190 RDEAVHGYYIGYKYQIALQKLS 211
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMT 88
E++ + +FW E++ +S D++ W +T E+ V D I A +
Sbjct: 30 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 89
Query: 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL 148
+ + A Y +E++H++ YS + T + + + N F E + +KA +
Sbjct: 90 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 148
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 208
++ +G + ++ +A +E F F +L R + LI RDE +H +
Sbjct: 149 SYYNGDDPLKKK-VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYY 207
Query: 209 ACLLYSLLRTKLSE---ERVKA----LVKEAVEIEREFVCD 242
Y KLSE E KA L+ + E E E+ D
Sbjct: 208 IGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTED 248
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
Length = 329
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 9/221 (4%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMT 88
E++ + +FW E++ +S D++ W +T E+ V D I A +
Sbjct: 31 EVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLP 90
Query: 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL 148
+ + A Y +E++H++ YS + T + + + N F E + +KA +
Sbjct: 91 DAETMHEEAVYTNIAFMESVHAKSYSNIFMT-LASTPQINEAFRWSEENENLQRKAKIIM 149
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDF 208
++ +G + ++ +A +E F F +L R + LI RDE +H +
Sbjct: 150 SYYNGDDPLKKK-VASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYY 208
Query: 209 ACLLYSLLRTKLSE---ERVKA----LVKEAVEIEREFVCD 242
Y KLSE E KA L+ + E E E+ D
Sbjct: 209 IGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTED 249
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
pdb|4DR0|B Chain B, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii)
Nrdf
Length = 350
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 98/229 (42%), Gaps = 33/229 (14%)
Query: 31 YKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDG--------IVLENL 82
Y + FW EE+ L+ DL W+ L +E+ VLA D IV E++
Sbjct: 43 YNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHV 102
Query: 83 AGRFMTEVQVAEARAFYGFQIAIEN-IHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVA 141
G + +A F +EN +H++ YS + T + ++ N +F ++ +
Sbjct: 103 DGH--------QRKAVLNFMAMMENAVHAKSYSNIFMT-LAPTETINEVFEWVKQNKYLQ 153
Query: 142 KKATWALNWI-----DGSETFAERLIAFACVEG-IFFSGSFCAIFWLKKRGLMPGLTFSN 195
KKA + D + + ++A +E +F+SG + +++ + LM N
Sbjct: 154 KKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIIN 213
Query: 196 ELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
LI RDE +H + LL + K +EE+ L REF D L
Sbjct: 214 -LILRDEAIHGVYVGLLAQEIYNKQTEEKKAEL--------REFAIDLL 253
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|B Chain B, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
pdb|1UZR|C Chain C, Crystal Structure Of The Class Ib Ribonucleotide Reductase
R2f-2 Subunit From Mycobacterium Tuberculosis
Length = 296
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 2/177 (1%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMT 88
E++ + +FW E+V +S D+ W LTA EK V D I A +
Sbjct: 26 EVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIP 85
Query: 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWAL 148
+ A +E++H++ YS + T + + E + F E + +KA L
Sbjct: 86 DALTPHEEAVLTNIAFMESVHAKSYSQIFST-LCSTAEIDDAFRWSEENRNLQRKAEIVL 144
Query: 149 NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLH 205
G E ++ + +F+SG + ++W R + LI RDE +H
Sbjct: 145 QSYRGDEPLKRKVASTLLESFLFYSGFYLPMYW-SSRAKLTNTADMIRLIIRDEAVH 200
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli
pdb|3N38|A Chain A, Ribonucleotide Reductase Nrdf From Escherichia Coli Soaked
With Ferrous Ions
pdb|3N39|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N39|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Nrdi
pdb|3N3A|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3A|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi
pdb|3N3B|B Chain B, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
pdb|3N3B|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From
Escherichia Coli In Complex With Reduced Nrdi With A
Trapped Peroxide
Length = 319
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 6/195 (3%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAG--RF 86
E++ + ++FW E+V LS D+ W+ LT E+ V D L+N+ G
Sbjct: 21 EVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLD--TLQNVIGAPSL 78
Query: 87 MTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATW 146
M + A +E +H+ YS + T + D + E P + +KA
Sbjct: 79 MPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDVDAAYAWSEENAP-LQRKAQI 137
Query: 147 ALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC 206
G + ++ IA +E F F + RG + LI RDE +H
Sbjct: 138 IQQHYRGDDPLKKK-IASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHG 196
Query: 207 DFACLLYSLLRTKLS 221
+ Y K+S
Sbjct: 197 YYIGYKYQKNMEKIS 211
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS
pdb|4AC8|A Chain A, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|B Chain B, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|C Chain C, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
pdb|4AC8|D Chain D, R2-Like Ligand Binding Mn-Fe Oxidase From M. Tuberculosis
With An Organized C-Terminal Helix
Length = 323
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 33/197 (16%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMT 88
+++ A FW ++D ++D WE L+ DE+ + T + F A + V E++ FM+
Sbjct: 31 KLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQP-FMS 89
Query: 89 EVQVAEAR---AFYGFQIAIENI-HSEMYSLLLET---------YIKDSDEKNRLFHAIE 135
++ AE R Y Q A E H++++ + L+ Y+ D ++F+A E
Sbjct: 90 AMR-AEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYA-E 147
Query: 136 TVPCVAKKATWALNWIDGSETFAERLIAFAC----VEGIFFSGSFCAIFWLK---KRGLM 188
C LN + + A ++ A VEG+ + A W K +R ++
Sbjct: 148 LPEC--------LNALSADPSPAAQVRASVTYNHIVEGMLALTGYYA--WHKICVERAIL 197
Query: 189 PGLTFSNELISRDEGLH 205
PG+ I DE H
Sbjct: 198 PGMQELVRRIGDDERRH 214
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 21/123 (17%)
Query: 111 EMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAE-RLIAFACVEG 169
E+Y LL + Y++D D R ++ E K W +W G + +L+AF
Sbjct: 39 ELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAFIAATP 98
Query: 170 IFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALV 229
+ F L SN++I + + +F C+ L +L+ +K +
Sbjct: 99 VTFK-----------------LNKSNKVI---DSVEINFLCIHKKLRNKRLAPVLIKEIT 138
Query: 230 KEA 232
+
Sbjct: 139 RRV 141
>pdb|3IU1|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU1|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa
pdb|3IU2|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IU2|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90096
pdb|3IWE|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3IWE|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd85646
pdb|3JTK|A Chain A, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
pdb|3JTK|B Chain B, Crystal Structure Of Human Type-I N-Myristoyltransferase
With Bound Myristoyl-Coa And Inhibitor Ddd90055
Length = 383
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 110 SEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAER-LIAF 164
E+Y+LL E Y++D D R ++ E + + W W G + R L+ F
Sbjct: 57 KELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 112
>pdb|1RXT|A Chain A, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|B Chain B, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|C Chain C, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase.
pdb|1RXT|D Chain D, Crystal Structure Of Human Myristoyl-Coa:protein N-
Myristoyltransferase
Length = 496
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 111 EMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAER-LIAF 164
E+Y+LL E Y++D D R ++ E + + W W G + R L+ F
Sbjct: 171 ELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 225
>pdb|3QHB|A Chain A, Crystal Structure Of Oxidized Symerythrin From Cyanophora
Paradoxa
pdb|3QHB|B Chain B, Crystal Structure Of Oxidized Symerythrin From Cyanophora
Paradoxa
pdb|3QHC|A Chain A, Crystal Structure Of Symerythrin From Cyanophora Paradoxa,
Reduced With Dithionite
pdb|3QHC|B Chain B, Crystal Structure Of Symerythrin From Cyanophora Paradoxa,
Reduced With Dithionite
Length = 179
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKA 227
+ +R P + + I+++EG+H LYS L K S E ++A
Sbjct: 50 IARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA 95
>pdb|3SID|A Chain A, Crystal Structure Of Oxidized Symerythrin From Cyanophora
Paradoxa, Azide Adduct At 50% Occupancy
pdb|3SID|B Chain B, Crystal Structure Of Oxidized Symerythrin From Cyanophora
Paradoxa, Azide Adduct At 50% Occupancy
Length = 180
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKA 227
+ +R P + + I+++EG+H LYS L K S E ++A
Sbjct: 51 IARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEA 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,337,265
Number of Sequences: 62578
Number of extensions: 349039
Number of successful extensions: 862
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 749
Number of HSP's gapped (non-prelim): 62
length of query: 329
length of database: 14,973,337
effective HSP length: 99
effective length of query: 230
effective length of database: 8,778,115
effective search space: 2018966450
effective search space used: 2018966450
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)