Query 040427
Match_columns 329
No_of_seqs 128 out of 1205
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:19:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00211 ribonucleoside-diphos 100.0 2.7E-87 5.8E-92 632.1 37.9 324 2-329 7-330 (330)
2 PLN02492 ribonucleoside-diphos 100.0 2.4E-86 5.3E-91 624.5 37.8 323 7-329 1-324 (324)
3 KOG1567 Ribonucleotide reducta 100.0 3.4E-86 7.3E-91 582.7 24.1 324 2-329 20-344 (344)
4 PRK07209 ribonucleotide-diphos 100.0 1.9E-77 4.2E-82 571.8 36.4 305 4-311 36-366 (369)
5 COG0208 NrdF Ribonucleotide re 100.0 1.2E-76 2.5E-81 554.6 36.3 306 7-314 16-341 (348)
6 PRK09101 nrdB ribonucleotide-d 100.0 1.3E-75 2.9E-80 560.1 35.9 309 4-315 13-367 (376)
7 PRK09614 nrdF ribonucleotide-d 100.0 1.8E-75 3.9E-80 551.6 35.7 299 8-310 2-314 (324)
8 PRK13966 nrdF2 ribonucleotide- 100.0 2.5E-72 5.4E-77 527.6 35.7 291 14-310 11-314 (324)
9 PRK12759 bifunctional gluaredo 100.0 4E-72 8.7E-77 542.4 35.0 294 16-313 97-403 (410)
10 PF00268 Ribonuc_red_sm: Ribon 100.0 4.5E-70 9.7E-75 505.7 33.3 278 8-287 2-281 (281)
11 PRK13965 ribonucleotide-diphos 100.0 7.6E-70 1.6E-74 513.0 34.1 290 15-310 23-325 (335)
12 PRK13967 nrdF1 ribonucleotide- 100.0 2.5E-67 5.5E-72 493.7 36.3 295 12-311 7-313 (322)
13 cd01049 RNRR2 Ribonucleotide R 100.0 2.2E-67 4.7E-72 489.6 33.6 272 17-289 1-286 (288)
14 cd07911 RNRR2_Rv0233_like Ribo 100.0 1.4E-50 2.9E-55 374.9 31.0 249 27-276 9-269 (280)
15 PRK08326 ribonucleotide-diphos 100.0 3.6E-50 7.8E-55 376.1 31.0 249 16-276 22-289 (311)
16 PF11583 AurF: P-aminobenzoate 98.5 9.7E-06 2.1E-10 76.1 19.4 178 37-224 47-235 (304)
17 cd01057 AAMH_A Aromatic and Al 98.0 0.0028 6.1E-08 62.7 24.2 219 53-276 68-301 (465)
18 PF02332 Phenol_Hydrox: Methan 97.8 0.0059 1.3E-07 55.2 19.6 163 55-221 66-232 (233)
19 TIGR02156 PA_CoA_Oxy1 phenylac 97.6 0.06 1.3E-06 50.0 23.2 216 56-289 17-259 (289)
20 cd01050 Acyl_ACP_Desat Acyl AC 97.5 0.015 3.3E-07 54.2 18.7 170 34-222 23-211 (297)
21 cd01058 AAMH_B Aromatic and Al 97.5 0.041 8.9E-07 51.7 21.4 165 52-219 89-257 (304)
22 PF05138 PaaA_PaaC: Phenylacet 97.4 0.093 2E-06 48.3 22.6 206 53-275 7-225 (263)
23 PRK13778 paaA phenylacetate-Co 97.4 0.13 2.9E-06 48.2 23.3 203 56-276 35-253 (314)
24 cd00657 Ferritin_like Ferritin 97.4 0.011 2.3E-07 46.3 13.9 111 85-212 19-129 (130)
25 PF03405 FA_desaturase_2: Fatt 96.5 0.06 1.3E-06 50.8 13.2 176 25-222 13-217 (330)
26 PF11266 DUF3066: Protein of u 96.3 0.61 1.3E-05 40.0 20.4 199 57-275 4-207 (219)
27 PRK13654 magnesium-protoporphy 95.5 0.38 8.3E-06 45.1 13.3 208 52-283 72-293 (355)
28 CHL00185 ycf59 magnesium-proto 95.3 0.76 1.6E-05 43.0 14.4 208 52-283 68-289 (351)
29 PRK14983 aldehyde decarbonylas 95.2 1.3 2.8E-05 38.5 14.2 199 57-275 14-217 (231)
30 TIGR02029 AcsF magnesium-proto 94.9 1.4 3E-05 41.1 14.8 208 52-283 62-283 (337)
31 TIGR02029 AcsF magnesium-proto 94.5 0.21 4.5E-06 46.4 8.3 45 173-217 86-132 (337)
32 PRK13654 magnesium-protoporphy 94.4 0.2 4.4E-06 46.9 8.2 45 173-217 96-142 (355)
33 cd01047 ACSF Aerobic Cyclase S 94.3 1.6 3.4E-05 40.5 13.6 208 52-283 52-273 (323)
34 cd01047 ACSF Aerobic Cyclase S 94.3 0.2 4.4E-06 46.2 7.8 45 173-217 76-122 (323)
35 PLN00179 acyl- [acyl-carrier p 94.3 1 2.2E-05 43.2 12.6 115 95-222 157-274 (390)
36 CHL00185 ycf59 magnesium-proto 93.9 0.3 6.6E-06 45.6 8.2 44 173-216 92-137 (351)
37 PLN02508 magnesium-protoporphy 93.6 0.069 1.5E-06 49.8 3.4 44 173-216 92-137 (357)
38 cd01041 Rubrerythrin Rubreryth 93.5 2.6 5.6E-05 34.3 12.5 106 85-215 25-132 (134)
39 PLN02508 magnesium-protoporphy 93.5 1.3 2.9E-05 41.5 11.6 208 52-283 68-289 (357)
40 COG3396 Uncharacterized conser 93.3 6.4 0.00014 36.0 22.8 217 55-289 11-253 (265)
41 PF04305 DUF455: Protein of un 93.2 6.7 0.00015 35.9 16.6 105 99-220 104-212 (253)
42 COG1633 Uncharacterized conser 90.4 11 0.00023 32.5 15.0 125 84-217 44-170 (176)
43 TIGR02158 PA_CoA_Oxy3 phenylac 89.4 16 0.00035 33.1 21.5 175 86-275 15-199 (237)
44 cd01044 Ferritin_CCC1_N Ferrit 89.4 9.7 0.00021 30.5 13.9 41 84-124 18-58 (125)
45 cd07908 Mn_catalase_like Manga 85.1 19 0.00041 29.9 11.3 115 81-211 35-152 (154)
46 cd07908 Mn_catalase_like Manga 82.2 8.4 0.00018 32.0 8.0 61 182-242 40-119 (154)
47 PF02915 Rubrerythrin: Rubrery 81.5 9.6 0.00021 30.2 7.9 112 85-212 19-136 (137)
48 cd01051 Mn_catalase Manganese 81.3 32 0.00069 29.0 12.1 105 91-216 51-155 (156)
49 cd01045 Ferritin_like_AB Uncha 81.1 25 0.00054 27.7 15.8 37 85-121 19-55 (139)
50 TIGR03225 benzo_boxB benzoyl-C 76.3 79 0.0017 30.7 13.0 209 44-275 86-302 (471)
51 PF10118 Metal_hydrol: Predict 74.7 68 0.0015 29.3 17.6 138 71-218 36-175 (253)
52 cd01055 Nonheme_Ferritin nonhe 68.2 67 0.0014 26.4 10.0 56 186-241 32-97 (156)
53 cd01046 Rubrerythrin_like rubr 64.7 71 0.0015 25.5 14.5 96 86-215 26-121 (123)
54 PF08671 SinI: Anti-repressor 63.8 3.8 8.3E-05 24.5 1.0 27 237-263 3-29 (30)
55 cd00907 Bacterioferritin Bacte 61.8 52 0.0011 26.9 8.0 58 184-241 32-98 (153)
56 PF02915 Rubrerythrin: Rubrery 61.5 14 0.00031 29.2 4.4 46 167-216 11-56 (137)
57 cd01046 Rubrerythrin_like rubr 61.0 74 0.0016 25.4 8.4 54 182-240 26-79 (123)
58 cd01041 Rubrerythrin Rubreryth 56.6 83 0.0018 25.3 8.2 57 182-238 26-87 (134)
59 PF03405 FA_desaturase_2: Fatt 55.8 85 0.0018 29.9 9.0 37 85-121 176-212 (330)
60 cd01050 Acyl_ACP_Desat Acyl AC 55.1 93 0.002 29.2 9.0 41 85-125 168-211 (297)
61 PF14518 Haem_oxygenas_2: Iron 53.5 55 0.0012 25.0 6.3 77 106-186 15-92 (106)
62 PF06945 DUF1289: Protein of u 52.6 16 0.00034 24.7 2.6 22 48-69 25-46 (51)
63 cd01051 Mn_catalase Manganese 49.7 1.5E+02 0.0032 24.9 8.7 36 85-120 120-155 (156)
64 PLN00179 acyl- [acyl-carrier p 49.4 89 0.0019 30.3 8.0 42 85-126 233-275 (390)
65 PF13668 Ferritin_2: Ferritin- 48.4 1.4E+02 0.0031 23.9 13.8 98 89-213 34-135 (137)
66 cd00657 Ferritin_like Ferritin 47.0 62 0.0013 24.2 5.8 32 188-219 26-57 (130)
67 PF12902 Ferritin-like: Ferrit 46.7 41 0.00089 30.2 5.2 40 179-219 19-58 (227)
68 COG1592 Rubrerythrin [Energy p 45.9 1.9E+02 0.0041 24.7 13.7 101 84-217 27-130 (166)
69 PF00268 Ribonuc_red_sm: Ribon 42.4 2E+02 0.0043 26.3 9.2 126 137-277 36-168 (281)
70 PF03070 TENA_THI-4: TENA/THI- 42.1 2.2E+02 0.0048 24.3 20.1 151 85-244 50-208 (210)
71 cd00907 Bacterioferritin Bacte 38.3 2.2E+02 0.0047 23.1 15.7 110 88-217 32-141 (153)
72 PF11251 DUF3050: Protein of u 37.9 3.1E+02 0.0066 24.7 11.2 159 72-238 33-227 (232)
73 cd01044 Ferritin_CCC1_N Ferrit 36.4 1E+02 0.0022 24.5 5.5 39 182-220 20-58 (125)
74 cd01052 DPSL DPS-like protein, 35.9 2.3E+02 0.005 22.8 8.4 59 183-241 32-110 (148)
75 PF03810 IBN_N: Importin-beta 35.4 36 0.00078 24.1 2.5 33 31-69 40-72 (77)
76 TIGR00754 bfr bacterioferritin 34.9 2.6E+02 0.0056 23.0 9.7 59 184-242 33-100 (157)
77 PTZ00072 40S ribosomal protein 32.7 72 0.0016 26.6 4.0 56 180-238 35-98 (148)
78 PF05067 Mn_catalase: Manganes 31.5 1.6E+02 0.0035 27.4 6.6 41 80-120 154-194 (283)
79 COG1592 Rubrerythrin [Energy p 31.2 1E+02 0.0023 26.3 4.9 36 181-216 28-63 (166)
80 COG3313 Predicted Fe-S protein 30.0 51 0.0011 24.1 2.4 24 48-71 30-53 (74)
81 PF06556 ASFV_p27: IAP-like pr 30.0 65 0.0014 25.1 3.1 44 265-308 34-83 (131)
82 PRK10304 ferritin; Provisional 28.8 3.6E+02 0.0077 22.8 9.9 60 181-241 30-99 (165)
83 PRK09614 nrdF ribonucleotide-d 28.4 2.2E+02 0.0048 26.7 7.3 77 137-218 39-117 (324)
84 COG1528 Ftn Ferritin-like prot 27.3 4E+02 0.0086 22.8 8.2 54 185-241 33-99 (167)
85 PF13108 DUF3969: Protein of u 26.1 1.5E+02 0.0032 23.5 4.6 70 196-275 25-94 (108)
86 PF13668 Ferritin_2: Ferritin- 25.8 3.4E+02 0.0074 21.6 7.7 33 85-117 103-135 (137)
87 COG1633 Uncharacterized conser 24.3 4.5E+02 0.0099 22.5 8.2 46 167-218 37-82 (176)
88 PRK15022 ferritin-like protein 23.7 4.6E+02 0.0099 22.3 10.3 58 181-242 30-100 (167)
89 cd07355 HN_L-delphilin-R2_like 23.5 2.5E+02 0.0054 20.8 5.0 17 55-71 15-31 (80)
90 cd01049 RNRR2 Ribonucleotide R 23.3 5.7E+02 0.012 23.2 11.6 67 157-226 47-114 (288)
91 COG3687 Predicted metal-depend 22.6 6.1E+02 0.013 23.3 15.6 124 85-218 61-187 (280)
92 PRK13967 nrdF1 ribonucleotide- 22.4 4.4E+02 0.0095 24.9 8.0 77 137-218 39-117 (322)
93 cd01055 Nonheme_Ferritin nonhe 21.9 4.4E+02 0.0095 21.4 15.3 110 89-217 31-140 (156)
94 COG4902 Uncharacterized protei 20.9 3.9E+02 0.0085 22.4 6.2 68 193-260 78-157 (189)
95 PF09011 HMG_box_2: HMG-box do 20.2 88 0.0019 22.3 2.2 18 51-68 41-58 (73)
96 PTZ00211 ribonucleoside-diphos 20.1 5.6E+02 0.012 24.2 8.2 78 44-122 142-223 (330)
No 1
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=100.00 E-value=2.7e-87 Score=632.13 Aligned_cols=324 Identities=74% Similarity=1.247 Sum_probs=312.3
Q ss_pred CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81 (329)
Q Consensus 2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~ 81 (329)
+.|++|+||+||++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 7 ~~~~~e~il~~~~~~~~~~p~kY~~~~~ly~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~ 86 (330)
T PTZ00211 7 ENEEEEPLLKENPDRFVLFPIKYPDIWRMYKKAEASFWTAEEIDLGNDLKDWEKLNDGERHFIKHVLAFFAASDGIVLEN 86 (330)
T ss_pred cccccCccccCCCCcceecCCccHHHHHHHHHHHHcCCChhhcchhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 040427 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERL 161 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
+.+.+++.++.||+++++++|+++|+||+++||+++++++.|+.+++++|+++.++|.+++|++|+.+++++++++++++
T Consensus 87 ~~~~~~~~~~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~~~~~~f~~~~~~p~i~~K~~~~~~~~~~~~~~~~~l 166 (330)
T PTZ00211 87 LAQRFMREVQVPEARCFYGFQIAMENIHSETYSLLIDTYITDEEEKDRLFHAIETIPAIKKKAEWAAKWINSSNSFAERL 166 (330)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhH
Q 040427 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 162 v~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~ 241 (329)
++++++||++||+||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|.+|++
T Consensus 167 v~~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~~ave~E~~~~~ 246 (330)
T PTZ00211 167 VAFAAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSHLKNKLPRERVQEIIKEAVEIEREFIC 246 (330)
T ss_pred HHHHHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 040427 242 DALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH 321 (329)
Q Consensus 242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~ 321 (329)
+++|++++||+.+++++||+|+||+||++||++++|+++||+|||+..+..+++||||+++|+|+|++...++ |++
T Consensus 247 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~----~~~ 322 (330)
T PTZ00211 247 DALPVDLIGMNSRLMAQYIEFVADRLLVALGVPKIYNSKNPFDWMDMISLQGKTNFFEKRVGEYQKAGVMAER----TSK 322 (330)
T ss_pred HHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccc----ccc
Confidence 9999999999999999999999999999999999999999999998877778999999999999999776433 255
Q ss_pred ccccCCCC
Q 040427 322 VFKIDEDF 329 (329)
Q Consensus 322 ~~~~~~~f 329 (329)
.|+|||||
T Consensus 323 ~~~~~~df 330 (330)
T PTZ00211 323 VFSLDADF 330 (330)
T ss_pred cccccCCC
Confidence 79999998
No 2
>PLN02492 ribonucleoside-diphosphate reductase
Probab=100.00 E-value=2.4e-86 Score=624.49 Aligned_cols=323 Identities=86% Similarity=1.408 Sum_probs=311.0
Q ss_pred CCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040427 7 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRF 86 (329)
Q Consensus 7 e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~ 86 (329)
|+||.+|++|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+
T Consensus 1 e~~l~en~~r~~~~p~~Y~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~il~~~~~~D~~v~~~~~~~~ 80 (324)
T PLN02492 1 EPLLAENPDRFCMFPIKYPQIWEMYKKAEASFWTAEEVDLSADLKDWEKLTDDERHFISHVLAFFAASDGIVLENLAARF 80 (324)
T ss_pred CcccccCCCCceecCCCcHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 040427 87 MTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFAC 166 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~ 166 (329)
++.++.||+++++++|+++|+||+++||+++++++.||.+++++|+++.++|.+++|++|+.+++++.++++++++++++
T Consensus 81 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~ 160 (324)
T PLN02492 81 MKEVQVPEARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFNAIETIPCVAKKADWALRWIDSSASFAERLVAFAC 160 (324)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998889999999999999999999999999999888889999999999
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcCC
Q 040427 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 167 lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~~ 246 (329)
+||++|||||+++++|+++|+|||++++|++|+|||++|+.+++.+++.++.++++++|++++++||++|++|++++++.
T Consensus 161 lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~l~~eav~~E~~~~~~~~~~ 240 (324)
T PLN02492 161 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLKNKLSEERVKEIVCEAVEIEKEFVCDALPC 240 (324)
T ss_pred hhHHhhhhhHHHHHHHHHcCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCC-CCCccccc
Q 040427 247 ALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGN-GGNHVFKI 325 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~-~~~~~~~~ 325 (329)
+++||+.+.+++||+|+||+||++||++|+|+++||+|||+.++..+++||||+++|+|+|++.+.+.+.. +++++|+|
T Consensus 241 ~~~Gl~~~~~~~yi~y~ad~~L~~lG~~~~f~~~nP~~w~~~~~~~~~tnFFe~~~t~Y~k~~~~~~~~~~~~~~~~~~~ 320 (324)
T PLN02492 241 ALVGMNADLMSQYIEFVADRLLVALGYEKVYNVVNPFDWMELISLQGKTNFFEKRVGEYQKAGVMSSLNGGGADNHVFSL 320 (324)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCchHHHhccccccccccccchhhhhcccccccccccccccceecc
Confidence 99999999999999999999999999999999999999998877778999999999999999988776533 24667999
Q ss_pred CCCC
Q 040427 326 DEDF 329 (329)
Q Consensus 326 ~~~f 329 (329)
||||
T Consensus 321 ~~df 324 (324)
T PLN02492 321 DEDF 324 (324)
T ss_pred CCCC
Confidence 9999
No 3
>KOG1567 consensus Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.4e-86 Score=582.69 Aligned_cols=324 Identities=71% Similarity=1.156 Sum_probs=315.8
Q ss_pred CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81 (329)
Q Consensus 2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~ 81 (329)
+..++|++|-+++.|++++|++|+.+|+.|||+++.||+++|||+++|..||.+|+++||..+.++|++++++|++|.++
T Consensus 20 ~~~~~e~ll~~~~~rfv~fpi~y~~iw~~ykkaeasfwtaeevdl~kd~~dw~~L~~~er~fIs~vlaffaasdGivnen 99 (344)
T KOG1567|consen 20 EGEKDEPLLMENPRRFVMFPIKYHDIWQMYKKAEASFWTAEEVDLSKDLDDWEKLNDDERHFISHVLAFFAASDGIVNEN 99 (344)
T ss_pred ccccccccccCCCCCceecccchHHHHHHHHhhhcccCcHHHhccccchhhHHHcChhhhhhHHHHHHHHhccccchhHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC-hhHHHH
Q 040427 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAER 160 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~-~~~~~~ 160 (329)
++.++...++.||+++|+++|+++||||++.||.++++++.||++++-+|+++.+.|.+++|++|+++|+.++ .+++++
T Consensus 100 l~Erfs~evqv~ear~fygfqIaiENIHSEmYSlLidtyIrD~ker~~LFnAI~t~p~vk~KAdWalrWI~d~~s~faeR 179 (344)
T KOG1567|consen 100 LVERFSQEVQVPEARCFYGFQIAIENIHSEMYSLLIDTYIRDPKEREFLFNAIETIPEVKKKADWALRWISDKDSLFAER 179 (344)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhhHHHHHHHHHHHHHhcCCCccHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999765 459999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh
Q 040427 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240 (329)
Q Consensus 161 lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~ 240 (329)
+|||+++|||+|+|+|+.+|||.++|+|||++-.+.+|+|||++|+.|+|.++.+|+++++++.|++++.+||++|.+|.
T Consensus 180 lvAFAavEGIFFSgsFasIFWLKKRGlMPGLTfSNELIsrdeglh~dFacll~~~l~~kp~~~ri~eII~eAV~IEqef~ 259 (344)
T KOG1567|consen 180 LVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLFSHLKKKPNEERIEEIITEAVEIEQEFL 259 (344)
T ss_pred HHHHHHHhhhhcccchhhhhhhhhcCCCCccccchhhhhhccCCcccHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCC
Q 040427 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGN 320 (329)
Q Consensus 241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~ 320 (329)
..++|...+|+|.+.|.+||+++||++|..||+++.|+++||++||+.+++.+|+||||+||++||+++++.+.. +
T Consensus 260 ~eaLPv~liGMN~~lM~qYIEFVADrLL~~lG~~K~Yn~~NPFdfMEnISl~GKTNFFEKrVseYQk~~vMs~~~----~ 335 (344)
T KOG1567|consen 260 TEALPVNLIGMNCDLMSQYIEFVADRLLVELGNEKYYNAENPFDFMENISLAGKTNFFEKRVSEYQKAGVMSNEP----E 335 (344)
T ss_pred HhccchhhhccCHHHHHHHHHHHHHHHHHHhCccceecCCCchHHHHHhhhccccchHHhhhHHhhhchhccCCc----c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998754 6
Q ss_pred cccccCCCC
Q 040427 321 HVFKIDEDF 329 (329)
Q Consensus 321 ~~~~~~~~f 329 (329)
++|++|+||
T Consensus 336 ~~F~ld~dF 344 (344)
T KOG1567|consen 336 NVFTLDADF 344 (344)
T ss_pred ceeccccCC
Confidence 799999998
No 4
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=1.9e-77 Score=571.85 Aligned_cols=305 Identities=30% Similarity=0.594 Sum_probs=284.6
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhc---CCHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA---LTADEKHFVTHVLAFFAASDGIVLE 80 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~---L~~~Er~~~~~~l~~~~~~d~~v~~ 80 (329)
-.+++|++|+++..+++|++|||+|++|+++.++||+|+|||+++|+.||++ ||+.||++++++|++|+++|++|++
T Consensus 36 ~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~Ds~v~~ 115 (369)
T PRK07209 36 VDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTADSLVAN 115 (369)
T ss_pred ccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899998888999999999999999999999999999999999999974 9999999999999999999999999
Q ss_pred hhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-------
Q 040427 81 NLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG------- 153 (329)
Q Consensus 81 ~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~------- 153 (329)
++.+.+++.++.||+++|+++|+++|+||+++||+++++++.+++ ++|+++.++|.+++|++|+.++++.
T Consensus 116 nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~---e~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~ 192 (369)
T PRK07209 116 NIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEG---EIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFK 192 (369)
T ss_pred hHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhccccccc
Confidence 998889999999999999999999999999999999999987664 5899999999999999999988742
Q ss_pred ------ChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-----
Q 040427 154 ------SETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS----- 221 (329)
Q Consensus 154 ------~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~----- 221 (329)
++++++++++++ ++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.++++++.+.|
T Consensus 193 ~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~~~~ 272 (369)
T PRK07209 193 TGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHLWTA 272 (369)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccH
Confidence 345899999986 58999999999999999999999999999999999999999999999999987654
Q ss_pred --HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCcchhh-hhccccCCCc
Q 040427 222 --EERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLY-GVANPFDWME-LISLQGKTNF 297 (329)
Q Consensus 222 --~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y-~~~nP~~w~~-~~~~~~~~nF 297 (329)
.++|++++++||++|++|++++++.+++|||.+++++||+|+||+||.+||++++| +++||+|||+ ..+..+++||
T Consensus 273 ~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~tnF 352 (369)
T PRK07209 273 EFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKEKNF 352 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhcccccCcc
Confidence 46899999999999999999999989999999999999999999999999999999 7899999995 4566778999
Q ss_pred cccccccccccccc
Q 040427 298 FEKRVGEYQKASVM 311 (329)
Q Consensus 298 Fe~~~~~Y~~~~~~ 311 (329)
||+|||+|+|++..
T Consensus 353 FE~rvt~Y~~~~~~ 366 (369)
T PRK07209 353 FETRVIEYQTGGAL 366 (369)
T ss_pred cccchhhhhcccCc
Confidence 99999999998753
No 5
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-76 Score=554.60 Aligned_cols=306 Identities=36% Similarity=0.579 Sum_probs=276.3
Q ss_pred CCCCCCC-CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 040427 7 EPLLAPN-PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGR 85 (329)
Q Consensus 7 e~il~~~-~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~ 85 (329)
..++.++ .+..+++|++|||+|++|+++.+|||+|+||||++|+.||++||+.||+++.++|++|+++|++|++++.+.
T Consensus 16 ~~~~~~~~~~~~~~n~iky~~~~~~y~~~~~nFW~PeeI~ls~D~~dw~~Ls~~Ek~~~~~vl~~lt~lDsiq~~~~~~~ 95 (348)
T COG0208 16 PKIFNGNPTNAINWNPIKYPWALELYKKLTANFWLPEEIDLSNDIKDWKKLSDDEKDLIIRVLAFLTLLDSIQANNGVPA 95 (348)
T ss_pred cccccCCccccccCCccccHHHHHHHHHHHhcCCCchhcCccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3355554 466899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH-HHhhhcHHHHHHHHHHHHhhcC------C--hh
Q 040427 86 FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLF-HAIETVPCVAKKATWALNWIDG------S--ET 156 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~-~~~~~~p~l~~k~~~~~~~~~~------~--~~ 156 (329)
+.+.++.||+++++++|++||+||++|||+|+++++.+++ ..++| +|+.++|.+++|++++...|++ + ..
T Consensus 96 ~~~~v~~pe~~~~l~~~af~E~iHs~SYs~i~~tl~~~e~-~~~~~~~~~~~~~~l~~k~~~i~~~y~~~~~~~~~~~~~ 174 (348)
T COG0208 96 LSPLVTTPEEEAVLTNQAFMEAIHARSYSYIFDTLGPTED-EDEVFDDWVATNEILQEKAEIILRYYDDLGDDPDDPLEE 174 (348)
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh-hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCcccchHH
Confidence 9999999999999999999999999999999999976554 44555 7888999999999999987762 1 12
Q ss_pred H-HHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-------HHHHHHH
Q 040427 157 F-AERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS-------EERVKAL 228 (329)
Q Consensus 157 ~-~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~v~~~ 228 (329)
. .+++++.+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.| ++.++++
T Consensus 175 ~~~~~~v~~~~lEgi~FYsGFa~~~~l~~r~kM~g~a~iirlI~RDE~~H~~~~~~l~~~~~~e~~~~~t~e~~~~~~~l 254 (348)
T COG0208 175 FLLKLVVASVILEGILFYSGFAYPLYLARRGKMPGTAEIIRLIIRDEALHLYFIGYLIQRLVAENPELWTAELKDEIYDL 254 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhHHHHHHHHHH
Confidence 3 4455555799999999999999999999999999999999999999999999999999998865 4678999
Q ss_pred HHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCcchhhhh-ccccCCCcccccccccc
Q 040427 229 VKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVA-NPFDWMELI-SLQGKTNFFEKRVGEYQ 306 (329)
Q Consensus 229 ~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~-nP~~w~~~~-~~~~~~nFFe~~~~~Y~ 306 (329)
+.+||++|++|++++++ +++||+.+.+++||+|+||+||++||++|+|+.. ||+||++.+ +..+++||||+++++|+
T Consensus 255 ~~~ave~E~~y~~~~~~-~~~Glt~d~~~~Yi~y~ankrL~~lG~~~~y~~~~NP~~~~~~~~~~~~~~dFFe~~~ssY~ 333 (348)
T COG0208 255 FKEAVELEKEYAEYLYP-GILGLTEDLVKQYIRYNANKRLQNLGLEPLYPAEENPIPWIELSLSADEKTDFFEGRVSSYQ 333 (348)
T ss_pred HHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHhhccccccCCccccccchHH
Confidence 99999999999999998 4999999999999999999999999999999866 999999985 44589999999999999
Q ss_pred cccccccC
Q 040427 307 KASVMSSL 314 (329)
Q Consensus 307 ~~~~~~~~ 314 (329)
||+.....
T Consensus 334 ~~~~~~~~ 341 (348)
T COG0208 334 KGSVASET 341 (348)
T ss_pred hhhcccCC
Confidence 99866543
No 6
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.3e-75 Score=560.06 Aligned_cols=309 Identities=24% Similarity=0.344 Sum_probs=282.4
Q ss_pred CCCCCCCCCCCCCc-cccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040427 4 IPEEPLLAPNPDRF-CMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL 82 (329)
Q Consensus 4 ~~~e~il~~~~~~~-~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l 82 (329)
..+++|++|++.++ .+.|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+.+|++|++++
T Consensus 13 ~~~~~~~~g~~~~~~~~~~~~y~~~~~lyk~~~~~fW~peEv~ls~D~~dw~~Lt~~Er~~~~~~L~~lt~lDs~q~~~~ 92 (376)
T PRK09101 13 QLKEPMFFGQSVNVARYDQQKYEIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSP 92 (376)
T ss_pred cccCCccCCCCccccccCchhhHHHHHHHHHHHhCCCCcccccccccHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45699999997654 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC--------
Q 040427 83 AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-------- 154 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~-------- 154 (329)
...+++.++.||+++++++|+++|+||+++||+|+++++.+|+ ++|+++.++|.+++|++|+.+++++.
T Consensus 93 ~~~~~~~i~~pE~~~~~~~q~~~E~IHs~sYs~il~tl~~~~~---e~f~~~~~~~~i~~K~~~i~~~y~~~~~~~~~~~ 169 (376)
T PRK09101 93 NVALLPLVSIPELETWIETWSFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEEILKRAKDISSYYDDLIEMTSYYH 169 (376)
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 8889999999999999999999999999999999999988776 69999999999999999999887531
Q ss_pred ----------------------hhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040427 155 ----------------------ETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 155 ----------------------~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
..+++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.+++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lva~~~lEgi~FyssFa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l 249 (376)
T PRK09101 170 LLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHM 249 (376)
T ss_pred hcccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1244566888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhc--cCC---------HHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-
Q 040427 213 YSLLRT--KLS---------EERVKALVKEAVEIEREFVCDAL-PCALVGMNGELMSQYIEFVADRLLGALGYGKLYGV- 279 (329)
Q Consensus 213 ~~~l~~--~~~---------~~~v~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~- 279 (329)
++.+.. +.| .++|++++++||++|++|+++++ +++++||+.+.+++||+|+||+||.+||++++|++
T Consensus 250 ~~~l~~~~e~p~~~~~~~~~~~~v~~l~~eave~E~~~~~~l~~~~~i~Gl~~~~~~~Yi~Y~An~rL~~LG~~~~f~~~ 329 (376)
T PRK09101 250 LNLMRSGKDDPEMAEIAEECKQECYDLFVQAAEQEKEWADYLFKDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTR 329 (376)
T ss_pred HHHHhhcccChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence 999985 322 25899999999999999999988 45799999999999999999999999999999986
Q ss_pred CCCcchhhhh-cccc-CCCcccccccccccccccccCC
Q 040427 280 ANPFDWMELI-SLQG-KTNFFEKRVGEYQKASVMSSLN 315 (329)
Q Consensus 280 ~nP~~w~~~~-~~~~-~~nFFe~~~~~Y~~~~~~~~~~ 315 (329)
+||+|||+.+ +..+ ++||||+++++|++++...+-+
T Consensus 330 ~nP~~wm~~~~~~~~~~~nffE~~~~~Y~~~~~~~~~~ 367 (376)
T PRK09101 330 SNPIPWINAWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 367 (376)
T ss_pred CCCHHHHHHHhcCCccccccccccHHHHhhccCcccCC
Confidence 7999999765 4444 7899999999999998876655
No 7
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=100.00 E-value=1.8e-75 Score=551.60 Aligned_cols=299 Identities=26% Similarity=0.396 Sum_probs=278.3
Q ss_pred CCCCCC-CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 040427 8 PLLAPN-PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRF 86 (329)
Q Consensus 8 ~il~~~-~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~ 86 (329)
++++|+ .++.+++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+
T Consensus 2 ~~~~g~~~~~~~~~~~~y~~~~~~y~~~~~~fW~peEi~~s~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~ 81 (324)
T PRK09614 2 KIIGGNTYSAINWNKIEDPWDYEAWKRLTANFWLPEEVPLSNDLKDWKKLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL 81 (324)
T ss_pred CCcCCCCcccccCCCcccHHHHHHHHHHHhCCCCCccccccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 456665 4678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHH
Q 040427 87 MTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG--SETFAERLIAF 164 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~--~~~~~~~lv~~ 164 (329)
.+.++.||+++++++|+++|+||+++||+++++++. +.++.++|+++.++|++++|++|+.+++++ ...+.++++++
T Consensus 82 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~tl~~-~~~~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~ 160 (324)
T PRK09614 82 MPDITTPEEEAVLANIAFMEAVHAKSYSYIFSTLCS-PEEIDEAFEWAEENPYLQKKADIIQDFYEPLKKKILRKAAVAS 160 (324)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999954 556688999999999999999999999974 23577888888
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH-------HHHHHHHHHHHHHHH
Q 040427 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIER 237 (329)
Q Consensus 165 ~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~v~~~~~eav~~E~ 237 (329)
+++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++++.+. ++|++++++||++|+
T Consensus 161 ~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~~~~~~v~~l~~~ave~E~ 240 (324)
T PRK09614 161 VFLEGFLFYSGFYYPLYLARQGKMTGTAQIIRLIIRDESLHGYYIGYLFQEGLEELPELEQEELKDEIYDLLYELYENEE 240 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988773 689999999999999
Q ss_pred HhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCCcchhhhhcc-c-cCCCcccccccccccccc
Q 040427 238 EFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYG--VANPFDWMELISL-Q-GKTNFFEKRVGEYQKASV 310 (329)
Q Consensus 238 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~--~~nP~~w~~~~~~-~-~~~nFFe~~~~~Y~~~~~ 310 (329)
+|++++++ ++| +.+++++||+|+||+||++||++|+|+ ++||+|||+..+. . +++||||+++++|+|++.
T Consensus 241 ~~~~~~~~--~~G-~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~np~~w~~~~~~~~~~~~nFFe~~~~~Y~~~~~ 314 (324)
T PRK09614 241 AYTELLYD--IVG-LAEDVKKYIRYNANKRLMNLGLEPLFPEEEEVNPIWLNGLSNNADENHDFFEGKGTSYVKGAT 314 (324)
T ss_pred HHHHHHHC--cCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCChHHHHHhccCCCeecCCCcCCccceeeccc
Confidence 99999997 999 999999999999999999999999995 7899999988743 3 478999999999999864
No 8
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.5e-72 Score=527.62 Aligned_cols=291 Identities=22% Similarity=0.304 Sum_probs=267.3
Q ss_pred CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHH
Q 040427 14 PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVA 93 (329)
Q Consensus 14 ~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
....+++|++|||++.+|+++.++||+|+|||+++|+.+|++||+.||++++++|++|+++|++|++++.+.+.+.++.|
T Consensus 11 ~~~~n~n~~~~~~~~~~~~~~~~nfW~peEi~l~~D~~dw~~Lt~~Ek~~~~~~L~fl~~~D~~~~~n~~~~~~~~~~~p 90 (324)
T PRK13966 11 VSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTP 90 (324)
T ss_pred cccccCCCcccHHHHHHHHHHHhCCCCccccCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999887899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 040427 94 EARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFS 173 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~ 173 (329)
|+++|+++|+++|+||+++||+++++++. ++++.++|+++.++|.|++|++|+.++++++. .++++++++++||++||
T Consensus 91 e~~~~~~~q~~~E~IHsesYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~~-~~~~~va~~~lEgi~Fy 168 (324)
T PRK13966 91 HEEAVLTNIAFMESVHAKSYSQIFSTLCS-TAEIDDAFRWSEENRNLQRKAEIVLQYYRGDE-PLKRKVASTLLESFLFY 168 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-cHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999964 67888999999999999999999999998765 46999999999999999
Q ss_pred hHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---H----HHHHHHHHHHHHHHHHhhHhhcCC
Q 040427 174 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---E----ERVKALVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 174 ~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---~----~~v~~~~~eav~~E~~~~~~~~~~ 246 (329)
|||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+..+.+ . +++++++++||++|++|+.+++
T Consensus 169 sgF~~~~~l~~~~km~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~~~~~~i~~l~~~av~~E~e~~~~~~-- 246 (324)
T PRK13966 169 SGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELLFELYDNEVEYTQDLY-- 246 (324)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999997764433 2 4679999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCcchhhhhccc--cCCCcccccccccccccc
Q 040427 247 ALVGMNGELMSQYIEFVADRLLGALGYGKLYGV----ANPFDWMELISLQ--GKTNFFEKRVGEYQKASV 310 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~~--~~~nFFe~~~~~Y~~~~~ 310 (329)
+++||+. ++++||+|+||+||++||++|+|+. .||+ |++..+.. +++||||+|||+|+||+.
T Consensus 247 ~~~Gl~~-~v~~Yi~y~An~~L~~lG~e~~f~~~~~~~nP~-~~~~~~~~~~~~~dFFe~r~t~Y~k~~~ 314 (324)
T PRK13966 247 DEVGLTE-DVKKFLRYNANKALMNLGYEALFPRDETDVNPA-ILSALSPNADENHDFFSGSGSSYVIGKA 314 (324)
T ss_pred hcCCChH-HHHHHHHHHHHHHHHHCCCCCCCCCCcCCCCCh-hHHhhccccccccCCCCCCCcccccccc
Confidence 5789987 6999999999999999999999965 6998 56555554 578999999999999855
No 9
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=4e-72 Score=542.41 Aligned_cols=294 Identities=28% Similarity=0.460 Sum_probs=271.6
Q ss_pred CccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHH
Q 040427 16 RFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE--ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVA 93 (329)
Q Consensus 16 ~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~--~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
+.+++|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+++|++|++++.+.+++.++.|
T Consensus 97 ~~~~~p~kY~~~~~ly~~~~~~fW~peEi~ls~D~~dw~~~~Lt~~Er~~~~~il~~~~~lD~~v~~~~~~~~~~~~~~p 176 (410)
T PRK12759 97 SKTYKPFNYPWAVDLTVKHEKAHWIEDEIDLSEDVTDWKNGKITKVEKEYITNILRLFTQSDVAVGQNYYDQFIPLFKNN 176 (410)
T ss_pred ccccCCCccHHHHHHHHHHHHcCCCccccchhhhHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHH
Confidence 568899999999999999999999999999999999996 699999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHh
Q 040427 94 EARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFF 172 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~lv~~~~lEgi~f 172 (329)
|+++++++|+++|+||+++||+++++++.+++ .|+.+.++|.+++|++|+.++... ...+++++++++++||++|
T Consensus 177 E~~~~~~~q~~~E~iHsesYs~il~tl~~~~~----~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~lv~~~~lEgi~F 252 (410)
T PRK12759 177 EIRNMLGSFAAREGIHQRAYALLNDTLGLPDS----EYHAFLEYKAMTDKIDFMMDADPTTRRGLGLCLAKTVFNEGVAL 252 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHhhHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976543 499999999999999999876653 3357888988899999999
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHhhHhhcC
Q 040427 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS-------EERVKALVKEAVEIEREFVCDALP 245 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~v~~~~~eav~~E~~~~~~~~~ 245 (329)
||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+.++.| ++.|++++++||++|++|++++++
T Consensus 253 ys~Fa~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~~~~~l~~~l~~e~p~~~~~~~~~~v~~~~~eave~E~~~~~~~~~ 332 (410)
T PRK12759 253 FASFAMLLNFQRFGKMKGMGKVVEWSIRDESMHVEGNAALFRIYCQENPYIVDNEFKKEIYLMASKAVELEDRFIELAYE 332 (410)
T ss_pred HHHHHHHHHHHhcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcChHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999976654 468999999999999999999886
Q ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCcchhhhhcc-ccCCCccccccccccccccccc
Q 040427 246 C-ALVGMNGELMSQYIEFVADRLLGALGYGKLYGV-ANPFDWMELISL-QGKTNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 246 ~-~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~-~nP~~w~~~~~~-~~~~nFFe~~~~~Y~~~~~~~~ 313 (329)
. .++||+.+++++||+|+||+||++||++|+|++ +||+|||+.... .+++||||+++|+|++++.+.+
T Consensus 333 ~~~i~Gl~~~~~~~Yiky~an~~L~~LG~~~~f~~~~nP~~w~~~~~~~~~~~nFFE~rvt~Y~~~~~~~~ 403 (410)
T PRK12759 333 LGTIEGLKADEVKQYIRHITDRRLNQLGLKEIYNIEKNPLTWLEWILNGADHTNFFENRVTEYEVAGLTGS 403 (410)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCChhHHHHHhccccccCCccccHHHHhhcccccc
Confidence 4 699999999999999999999999999999987 899999986543 4689999999999999986544
No 10
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=100.00 E-value=4.5e-70 Score=505.71 Aligned_cols=278 Identities=42% Similarity=0.783 Sum_probs=259.6
Q ss_pred CCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 040427 8 PLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFM 87 (329)
Q Consensus 8 ~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~ 87 (329)
+||.+|..|| +|++||++|++|+|++++||+|+|||+++|+.+|++||+.||++++++|++|+.+|++|++++.+.++
T Consensus 2 ~~l~~~~~~~--~pi~y~~~~~ly~k~~~~fW~peEi~~~~D~~~~~~Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i~ 79 (281)
T PF00268_consen 2 PLLKENAINW--NPIKYPWFWDLYKKAESNFWTPEEIDMSKDIKDWKKLSEEEREAYKRILAFFAQLDSLVSENLLPNIM 79 (281)
T ss_dssp TTTSCGTTCT--TS-SSHHHHHHHHHHHHT---GGGS-GGGHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHhC--CCCCCHHHHHHHHHHHhCCCCchhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 6899999888 89999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 88 TEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+.+++||+++++++|+++|+||+++||+++++++.|++++.++|+++.++|.+++|++++.++++++.++.+++++++++
T Consensus 80 ~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~l 159 (281)
T PF00268_consen 80 PEITSPEIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIFDWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVIL 159 (281)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999987888999999999999999999999999998777788999999999
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHhhHhhcC
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT--KLSEERVKALVKEAVEIEREFVCDALP 245 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~--~~~~~~v~~~~~eav~~E~~~~~~~~~ 245 (329)
|||+|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.|+. ++.++.|++++++||++|.+|++..++
T Consensus 160 Egi~f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~~~~i~~l~~eav~~E~~~~~~~~~ 239 (281)
T PF00268_consen 160 EGILFYSGFAYILYLARQGKMPGLAEIIKLIMRDESLHVEFGIYLFRTLVEENKPEEEEIYELFDEAVELEIEFIDDILP 239 (281)
T ss_dssp HHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999994 555789999999999999999998888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhh
Q 040427 246 CALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWME 287 (329)
Q Consensus 246 ~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~ 287 (329)
+++.|++.+++++||+|+||+||.+||++|+|++.||.+||+
T Consensus 240 ~~~~gl~~~~~~~yi~y~an~~L~~lG~~~~y~~~~~~~~~~ 281 (281)
T PF00268_consen 240 GDIIGLNKEDIKQYIKYNANRRLRNLGFEPIYNVENPFPWME 281 (281)
T ss_dssp GGGTTBSHHHHHHHHHHHHHHHHHHTTS--SSTTCCSSTTHC
T ss_pred CCcCCCcHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Confidence 889999999999999999999999999999999999999984
No 11
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=7.6e-70 Score=512.98 Aligned_cols=290 Identities=18% Similarity=0.308 Sum_probs=259.9
Q ss_pred CCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHH
Q 040427 15 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAE 94 (329)
Q Consensus 15 ~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E 94 (329)
+..++.|++|||++++|+++.++||+|+|||+++|+.+|++||+.||++++++|++|+++|++|+..+.....+....++
T Consensus 23 ~~~n~~~~~~~~~~~~~~~~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~la~lt~~Dslq~~~~~~~~~~e~~~~~ 102 (335)
T PRK13965 23 RSINWNYLNDDKDLEVWNRVTQNFWLPEKVPVSNDLNSWRSLGEDWQQLITRTFTGLTLLDTVQATVGDVAQIPHSQTDH 102 (335)
T ss_pred ccccccCcccHHHHHHHHHHHHcCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchH
Confidence 35788999999999999999999999999999999999999999999999999999999999999876555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 040427 95 ARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSG 174 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~ 174 (329)
.++++++|+++|+||+++||+++++++.++ ++.++|+++.++|.+++|++|+.+++++. +.++++++++++||++|||
T Consensus 103 e~~~l~~q~~~E~IHs~sYs~il~tl~~~~-~~~~~f~~~~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 180 (335)
T PRK13965 103 EQVIYTNFAFMVAIHARSYGTIFSTLCSSE-QIEEAHEWVVSTESLQRRARVLIPYYTGD-DPLKSKVAAAMMPGFLLYG 180 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHhcCHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999997655 66789999999999999999999999764 4589999999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH-------HHHHHHHHHHHHHHHHhhHhhcCCC
Q 040427 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIEREFVCDALPCA 247 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~-------~~v~~~~~eav~~E~~~~~~~~~~~ 247 (329)
||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+..++++ ++|++++++||++|++|++++++
T Consensus 181 gFa~~~~L~~~gkM~g~~~~i~~I~RDE~lH~~~~~~l~~~~~~~~~~e~~~~~~~~v~~l~~eav~~E~~~~~~~~~-- 258 (335)
T PRK13965 181 GFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQQKVARLSPEKQAEMKAFVFDLLYELIDLEKAYLRELYA-- 258 (335)
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999999999999999999999887666554 46899999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CC--cchhhhhccccCCCcccccccccccccc
Q 040427 248 LVGMNGELMSQYIEFVADRLLGALGYGKLYGVA----NP--FDWMELISLQGKTNFFEKRVGEYQKASV 310 (329)
Q Consensus 248 ~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~----nP--~~w~~~~~~~~~~nFFe~~~~~Y~~~~~ 310 (329)
.+|++.+ +++||+|+||+||++||++|+|++. || ++|+.. ...+++||||+|+++|+||++
T Consensus 259 ~~g~~~~-~~~Yi~y~an~~L~~LG~~~~f~~~~~~~~p~~~~~~~~-~~~~~~dFFe~~~t~Y~~~~~ 325 (335)
T PRK13965 259 GFDLAED-AIRFSLYNAGKFLQNLGYESPFTEEETRVSPEVFAQLSA-RADENHDFFSGNGSSYVMGIT 325 (335)
T ss_pred CCCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhCc-cccccCCCCCCCCCcCeeccc
Confidence 6899866 9999999999999999999999754 55 234442 235689999999999999865
No 12
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=100.00 E-value=2.5e-67 Score=493.69 Aligned_cols=295 Identities=18% Similarity=0.274 Sum_probs=263.5
Q ss_pred CCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcC
Q 040427 12 PNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQ 91 (329)
Q Consensus 12 ~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~ 91 (329)
++....+...++|+|...+|+++.++||.|+|||+++|+.||++||+.||++++++|++|+++|++|+.++.+.+...++
T Consensus 7 ~~~~~~nwn~~~~~~~~~~~~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~~ 86 (322)
T PRK13967 7 ERVHAINWNRLLDAKDLQVWERLTGNFWLPEKIPLSNDLASWQTLSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDAV 86 (322)
T ss_pred cccccCCCCCccchhhHHHHHHHHhCCCCccccCchhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcC
Confidence 44556788889999999999999999999999999999999999999999999999999999999999998877899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 040427 92 VAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIF 171 (329)
Q Consensus 92 ~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 171 (329)
.||+++++++|+++|+||++|||+++++++. ++++.++|+++.++|.+++|++|+.+++++. ...+++++++++||++
T Consensus 87 ~~e~~~~l~~~~~~E~iHs~sYs~il~tl~~-~~~~~~~f~~~~~~~~l~~K~~~i~~~~~~~-~~~~~~v~~~~lEgi~ 164 (322)
T PRK13967 87 TPHEEAVLTNMAFMESVHAKSYSSIFSTLCS-TKQIDDAFDWSEQNPYLQRKAQIIVDYYRGD-DALKRKASSVMLESFL 164 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999965 5677899999999999999999999999864 4568888899999999
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-------HHHHHHHHHHHHHHHHHhhHhhc
Q 040427 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS-------EERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 172 f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~v~~~~~eav~~E~~~~~~~~ 244 (329)
|||||+++++|+++|+|||++++|++|.|||++|+.|++++++....+++ .+.+.+++.+++++|++|+.+++
T Consensus 165 FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~~~~~l~~~e~~~~~~~~~~l~~~~~~~E~~~~~~~~ 244 (322)
T PRK13967 165 FYSGFYLPMYWSSRGKLTNTADLIRLIIRDEAVHGYYIGYKCQRGLADLTDAERADHREYTCELLHTLYANEIDYAHDLY 244 (322)
T ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999997755554544 23588999999999999999877
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CCc-chhh-hhcc--ccCCCccccccccccccccc
Q 040427 245 PCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVA-NPF-DWME-LISL--QGKTNFFEKRVGEYQKASVM 311 (329)
Q Consensus 245 ~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~-nP~-~w~~-~~~~--~~~~nFFe~~~~~Y~~~~~~ 311 (329)
+++||+.+ +++||+|+||+||++||++|+|++. +|. ||+. ..+. .+++||||+|+++|+|+++.
T Consensus 245 --~~~Gl~~~-v~~yi~Y~an~rL~~LGl~~~f~~~~~~~nP~~~~~~~~~~~~~~dFFe~r~t~Y~k~~~~ 313 (322)
T PRK13967 245 --DELGWTDD-VLPYMRYNANKALANLGYQPAFDRDTCQVNPAVRAALDPGAGENHDFFSGSGSSYVMGTHQ 313 (322)
T ss_pred --CcCCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcHHHHhhccccCccCCCCCCCCccccccCcc
Confidence 58999865 8899999999999999999999753 554 5552 2332 35789999999999998553
No 13
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=100.00 E-value=2.2e-67 Score=489.59 Aligned_cols=272 Identities=60% Similarity=0.979 Sum_probs=259.9
Q ss_pred ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHH
Q 040427 17 FCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEAR 96 (329)
Q Consensus 17 ~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~ 96 (329)
++++|++|||+|++|++++++||.|+|||+++|+.+|++||+.||++++++|++|+.+|++|++++.+.+.+.++.||++
T Consensus 1 ~~~~~~~y~~~~~ly~~~~~~~W~p~ei~~~~D~~~~~~l~~~er~~~~~~la~~~~~d~~v~~~~~~~~~~~~~~~e~~ 80 (288)
T cd01049 1 FNLNPIKYPWAWELYKKAEANFWTPEEIDLSKDLKDWEKLTEAERHFIKRVLAFLAALDSIVGENLVELFSRHVQIPEAR 80 (288)
T ss_pred CCCCccccHHHHHHHHHHHHcCCChhhcchhhhHHHHhHCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcChHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888898999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHH
Q 040427 97 AFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-----ETFAERLIAFACVEGIF 171 (329)
Q Consensus 97 ~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~-----~~~~~~lv~~~~lEgi~ 171 (329)
+++++|+++|+||+++||+++++++.++ +++++|+++.++|.+++|++++.+++++. +++++++++++++||++
T Consensus 81 ~~~~~q~~~E~iH~e~Ys~il~~l~~~~-e~~~~~~~~~~~~~l~~k~~~~~~~~~~~~~~~~~~~~~~lv~~~~lEgi~ 159 (288)
T cd01049 81 AFYGFQAFMENIHSESYSYILDTLGKDE-ERDELFEAIETDPALKKKADWILRWYDNLDDNTKESFAERLVAFAILEGIF 159 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc-cHHHHHHHHhcCHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876 78899999999999999999999999743 47999999999999999
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC-------CHHHHHHHHHHHHHHHHHhhHhhc
Q 040427 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL-------SEERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 172 f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~-------~~~~v~~~~~eav~~E~~~~~~~~ 244 (329)
|+|||+++++|+++|+|||+++++++|+|||++|+.|++.+++.++++. ..+.|.+++++||++|++|+++++
T Consensus 160 f~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~~~~~l~~~~~~~~~~~~~~~v~~l~~~av~~E~~~~~~~~ 239 (288)
T cd01049 160 FYSGFAAIFWLARRGKMPGLAEIIELISRDESLHGDFACLLIRELLNENPELFTEEFKEEVYELIKEAVELEKEFARDLL 239 (288)
T ss_pred HHHHHHHHHHHHHCCCccchHHHhHHHHccHHHHHHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999874 367899999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCcchhhhh
Q 040427 245 PCALVGMNGELMSQYIEFVADRLLGALGYGKLYGV--ANPFDWMELI 289 (329)
Q Consensus 245 ~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~--~nP~~w~~~~ 289 (329)
+.++.|++.+++++||+|+||+||.+||++++|++ .||+|||+.+
T Consensus 240 ~~~~~g~~~~~~~~yi~y~an~~l~~lG~~~~f~~~~~nP~~~~~~~ 286 (288)
T cd01049 240 PDGILGLNKEDMKQYIEYVANRRLENLGLEKLFNVEDKNPFDWMELI 286 (288)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 88899999999999999999999999999999987 8999999865
No 14
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=100.00 E-value=1.4e-50 Score=374.91 Aligned_cols=249 Identities=19% Similarity=0.261 Sum_probs=209.4
Q ss_pred HHHHHHHHHhC-CCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--hhcCHHHHHHHHHHHH
Q 040427 27 IWEMYKKAEAS-FWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFM--TEVQVAEARAFYGFQI 103 (329)
Q Consensus 27 ~~~ly~k~~~~-fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~--~~~~~~E~~~~~~~q~ 103 (329)
.+++|+++.++ ||+|+|||+++|+.+|++||+.||++++++|++|+++|++|+.++.+.+. ..++.||+++|+++|+
T Consensus 9 ~~~ly~~~~~~~~W~~~eid~s~D~~~w~~L~~~Er~~~~~~l~~f~~~D~~v~~~l~~~~~~~~~~~~~e~~~~l~~q~ 88 (280)
T cd07911 9 PMKLFEKGKRKGFWNPADIDFSQDREDWEQLSEEERDLALRLCAGFIAGEEAVTLDLLPLMMAMAAEGRLEEEMYLTQFL 88 (280)
T ss_pred hHHHHHHHHccCCCCHHHcCccchHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH
Confidence 46899999999 99999999999999999999999999999999999999999999987665 4567899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--ChhHHHHHHH-HHHHHHHHhHhHHHHHH
Q 040427 104 AIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG--SETFAERLIA-FACVEGIFFSGSFCAIF 180 (329)
Q Consensus 104 ~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~--~~~~~~~lv~-~~~lEgi~f~~~F~~~~ 180 (329)
++|++|+++||+++++++.+++ .+...++....+.+.++..+....++. +..++++.+. ..++||++|||||++++
T Consensus 89 ~~EaiH~esYs~~l~tl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~ 167 (280)
T cd07911 89 FEEAKHTDFFRRWLDAVGVSDD-LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWR 167 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcc-hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999976542 223334444444444444555544443 3345664444 45899999999999987
Q ss_pred -HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHH
Q 040427 181 -WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE--ERVKALVKEAVEIEREFVCDAL---PCALVGMNGE 254 (329)
Q Consensus 181 -~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~--~~v~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~ 254 (329)
+++++|+|||++++|++|.|||++|+.||+.+++.++++.|. +.+.+.++++++.|.++++.++ +..++|++.+
T Consensus 168 ~~l~~~g~m~g~~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~e~~~~l~~~av~~~~~~~~~~~~~~~g~~~~ 247 (280)
T cd07911 168 TICEKRGILPGMQEGIRRLGDDESRHIAWGTFTCRRLVAADDANWDVFEERMNELVPHALGLIDEIFELYDEMPFGLDPD 247 (280)
T ss_pred HHHhhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCCHH
Confidence 699999999999999999999999999999999999977642 4678888888888888877664 4459999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 040427 255 LMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 255 ~~~~yi~y~an~~l~~lG~~~~ 276 (329)
++.+|++|.||+||.+||++|-
T Consensus 248 ~~~~Y~~~~a~~rL~~lg~~~~ 269 (280)
T cd07911 248 ELMQYAVDQFQRRLGYIERARG 269 (280)
T ss_pred HHHHHHHHHHHHHHHHhCCCcC
Confidence 9999999999999999999984
No 15
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=100.00 E-value=3.6e-50 Score=376.09 Aligned_cols=249 Identities=20% Similarity=0.320 Sum_probs=217.4
Q ss_pred CccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCH---
Q 040427 16 RFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQV--- 92 (329)
Q Consensus 16 ~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~--- 92 (329)
+|+.+| .++|++++++||+|+|||+++|+.+|++||+.||+++++++++|+++|++|+.++.+ +...++.
T Consensus 22 ~w~~~~------~~ly~~~~~~fW~peEidls~D~~dw~~Lt~~Er~~~~~ila~f~~~d~~V~~nl~~-~i~~~~~~~~ 94 (311)
T PRK08326 22 NWNSFP------MKLFAKGNAKFWNPADIDFSRDAEDWEKLSDEERDYATRLCAQFIAGEEAVTLDIQP-LISAMAAEGR 94 (311)
T ss_pred CcchhH------HHHHHHHHHcCCCHHhcCccchHHHHHhCCHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHhhccccCC
Confidence 566555 579999999999999999999999999999999999999999999999999999864 5566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHH----HHHHhhc---CChhHHHHHHHHH
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKAT----WALNWID---GSETFAERLIAFA 165 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~----~~~~~~~---~~~~~~~~lv~~~ 165 (329)
||+++|+++|+++|++|+++|++++++++.+. +++.++.++|.+++|.. +....+. +++.++++++++.
T Consensus 95 ~e~~~~l~~q~~~EaiH~e~Y~~~le~l~~~~----~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~ 170 (311)
T PRK08326 95 LEDEMYLTQFAFEEAKHTEAFRRWFDAVGVTE----DLSVYTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYN 170 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999996543 35677778899999853 4444443 2345777888764
Q ss_pred -HHHHHHhHhHHHHH-HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHH
Q 040427 166 -CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE------ERVKALVKEAVEIER 237 (329)
Q Consensus 166 -~lEgi~f~~~F~~~-~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~------~~v~~~~~eav~~E~ 237 (329)
++|||+|||||+++ ++++++|+|||++++|++|.|||++|+.||+.+++.++.+.+. +.+.+++.+|+++ +
T Consensus 171 ~~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~~I~RDE~~H~~fg~~l~~~l~~e~p~~~~~~~~~i~el~~~av~~-~ 249 (311)
T PRK08326 171 HVVEGVLAETGYYAWRKICVTRGILPGLQELVRRIGDDERRHIAWGTYTCRRLVAADDSNWDVFEERMNELLPLALGL-I 249 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHH-H
Confidence 79999999999997 5899999999999999999999999999999999999987653 5788999999995 8
Q ss_pred HhhHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 040427 238 EFVCDALPCALV-GMNGELMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 238 ~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
+|+.+.++..++ |+|.+++.+||+|+||+||++||+..-
T Consensus 250 ~~~~~~~~~~i~~Gl~~~~~~~Yi~y~an~RL~~iG~~~~ 289 (311)
T PRK08326 250 DEIFALYGDQIPFELSNDEFVDYAADRGQRRLGAIERARG 289 (311)
T ss_pred HHHHHhccCcccCCCCHHHHHHHHHHHHHHHHHHhCcccc
Confidence 999888877786 999999999999999999999999874
No 16
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=98.55 E-value=9.7e-06 Score=76.08 Aligned_cols=178 Identities=17% Similarity=0.075 Sum_probs=100.1
Q ss_pred CCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHh----hcCHHHHHHHHHHHHHHHH
Q 040427 37 SFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA-----GRFMT----EVQVAEARAFYGFQIAIEN 107 (329)
Q Consensus 37 ~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~-----~~~~~----~~~~~E~~~~~~~q~~~E~ 107 (329)
.+|.|.+...--.-.-|..||+++|..+.+.-..-.....+..+... ..++. .-.....+.+...++.+|+
T Consensus 47 ~~~~p~~~~pl~gtp~~~~l~~~~r~~l~~~~~~~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~ 126 (304)
T PF11583_consen 47 RPWLPPELLPLYGTPLWERLSEEQRIELLRHEWANYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEA 126 (304)
T ss_dssp S-SS-GGGSTTTT-HHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHH
T ss_pred ccCCCcccCccCCCHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHH
Confidence 45666555555556789999999999886654443343444443321 23333 2245667778888899999
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHhHHHHHHHHH-hc
Q 040427 108 IHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF-ACVEGIFFSGSFCAIFWLK-KR 185 (329)
Q Consensus 108 iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~-~~ 185 (329)
.|+.+|.++++..+.... +-. ...-+........+...... .......++. .+.|.+.- .....+. ..
T Consensus 127 rH~~mf~~~~~~~~~~~~----l~~-~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~lv~Ee~i~----~~~~~~~~D~ 196 (304)
T PF11583_consen 127 RHSLMFARAINRTGRRRG----LAP-LPPPYPPRRLLRRLARLLPP-WERGLLFFAFALVAEEIID----AYQREIARDE 196 (304)
T ss_dssp HHHHHHHHHHHHHHHHTT---------S--HHHHHHHHHHHTS-SH-HHHHHHHHHHHHHHHHSBH----HHHHHHHT-S
T ss_pred HHHHHHHHHHHHHhhhcC----ccc-CCCCCchHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHH----HHHHHhhcCC
Confidence 999999999998851000 000 11112222222233332221 1111222222 35677632 1112223 34
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHH
Q 040427 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEER 224 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~ 224 (329)
+.-|-+.++++...+||++|+.|+...++....+.++.+
T Consensus 197 ~iqP~~r~v~~iH~~DEaRHi~f~~~~l~~~~~~l~~~~ 235 (304)
T PF11583_consen 197 TIQPLVRQVMRIHVRDEARHIAFAREELRRVWPRLSPAE 235 (304)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 567888899999999999999999999999998887543
No 17
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=98.04 E-value=0.0028 Score=62.71 Aligned_cols=219 Identities=16% Similarity=0.079 Sum_probs=132.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD-SDEKNRLF 131 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e~~~~~ 131 (329)
+..+++.-.++++..++.+..++-......+ .+.+..++++++..+.+|+.+|.+|+..=.+....+..+ |.- ...-
T Consensus 68 ~~~~dp~W~~~Lk~~~~a~~~~Ey~a~~~~a-~~~R~a~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GF-d~~~ 145 (465)
T cd01057 68 YEKVDPRWVEAMKLFLGAITPGEYAAVRGMA-MLGRFAPAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGF-DWAQ 145 (465)
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ChHH
Confidence 4568899999999999999988866655543 578899999999999999999999998877666655321 100 0001
Q ss_pred HHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHH
Q 040427 132 HAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFA 209 (329)
Q Consensus 132 ~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~ 209 (329)
..+.++|..+.=-..+.+.+.+ .+..+.+++.. +.|.++=-..|..+...+ .+|= ..+..++.-+..||++|...|
T Consensus 146 ~~~~~~~~~~~~R~~~ed~~~t-~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD-~~tptv~~S~QsDe~Rh~~~g 223 (465)
T cd01057 146 KAFHGNWYAGAAKRFFFDGFIT-GDAVEAALALQFVFETAFTNLLFVALASDAAANGD-YATPTVFLSIQSDEARHMANG 223 (465)
T ss_pred HHHhhCcHHHHHHHHHHHHHhc-CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCC-hhhHHHHHHHHHHHHHHHHhH
Confidence 2334666655432333332222 24668888875 578764333333333333 2231 234556777889999999999
Q ss_pred HHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhhHhhc--------CCCCCCCCHHHHHHHHHHHHHHHHHHc---CCCCC
Q 040427 210 CLLYSLLRTK-LSEERVKALVKEAVEIEREFVCDAL--------PCALVGMNGELMSQYIEFVADRLLGAL---GYGKL 276 (329)
Q Consensus 210 ~~l~~~l~~~-~~~~~v~~~~~eav~~E~~~~~~~~--------~~~~~Gl~~~~~~~yi~y~an~~l~~l---G~~~~ 276 (329)
..++..+.+. .+...+.+-++...-.=.+.++... +...... ++.+.+||.-.--..+..| |++++
T Consensus 224 ~~ll~~l~~Dp~N~~~lq~wld~w~wr~~~a~~~l~g~~~dY~~~~r~~s~-~e~~~~wi~~~~~~~~~~L~~~Gl~~P 301 (465)
T cd01057 224 YPTLVLLENDPDNVPLLQRDLDKAFWRQHRLFDALVGMLMDYGTPKRVMSW-KEFWEEWIEEDFGSYFKDLEKYGLKKP 301 (465)
T ss_pred HHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHccCCcCcccH-HHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999655543 2345555555554444433332221 1122111 3455665555555667777 99765
No 18
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=97.76 E-value=0.0059 Score=55.18 Aligned_cols=163 Identities=16% Similarity=0.041 Sum_probs=117.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHH
Q 040427 55 ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI---KDSDEKNRLF 131 (329)
Q Consensus 55 ~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~~~ 131 (329)
.|++.-++.++..++.+...+-....+. ..+.+..+.++++.++.+|+++|.+|..--.+++..+. .++.--. =
T Consensus 66 ~l~~~w~~~l~~~~~~~~~~E~ga~~~~-a~~~r~~~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~--k 142 (233)
T PF02332_consen 66 ALDPRWVEFLKRHLGPLRHAEYGAQMAS-AYIARFAPGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAA--K 142 (233)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCT--H
T ss_pred cCCHHHHHHHHHHcCCcchHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHH--H
Confidence 3599999999999999998886655554 35788999999999999999999999999888888773 2221000 2
Q ss_pred HHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHH
Q 040427 132 HAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC 210 (329)
Q Consensus 132 ~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~ 210 (329)
..+.++|..+-=-+.+.+.+-. .++.+.+++.. ++|+++.--.|.-+-..+..+==..+..++..+..||.+|...+.
T Consensus 143 ~~w~~~p~wq~~R~~vE~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~~~q~d~~r~~~~~~ 221 (233)
T PF02332_consen 143 EAWLNDPAWQPLRRLVEDLLVT-YDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTSSIQSDEARHMRWGD 221 (233)
T ss_dssp HHHHHSHHHHHHHHHHHHHTTS-SSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCchhHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788776654555553322 24678888876 579987655555554444333235677788999999999999999
Q ss_pred HHHHHHhccCC
Q 040427 211 LLYSLLRTKLS 221 (329)
Q Consensus 211 ~l~~~l~~~~~ 221 (329)
.+++.+.++.+
T Consensus 222 al~~~~~~~~~ 232 (233)
T PF02332_consen 222 ALFKMALEDDP 232 (233)
T ss_dssp HHHHHHHCTTT
T ss_pred HHHHHHHhCCC
Confidence 99999887654
No 19
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.55 E-value=0.06 Score=50.01 Aligned_cols=216 Identities=13% Similarity=0.050 Sum_probs=143.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 040427 56 LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIE 135 (329)
Q Consensus 56 L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~ 135 (329)
||+.-|..+.+.+..++-.+-+.+.-. .......|.-|.+..++..+-+|.=|+..+-.+..+++.+.+ +....+.
T Consensus 17 mp~~yr~~L~r~l~~~AdsEli~a~r~-~eW~~~AP~LeediAl~niaqDelGHar~ly~~a~~LG~~r~---ed~~a~~ 92 (289)
T TIGR02156 17 MPAAYRKTLIRQISQHAHSEIVGMLPE-GNWITRAPTLKRKLILMAKVQDEAGHGLYLYAAAETLGVSRE---ELLDALL 92 (289)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHhcccc-ccHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHh
Confidence 888889999999999988776555444 346778899999999999999999999999999999965432 2222221
Q ss_pred hcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 136 TVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 136 ~~p~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+ .++.. ..+ ...+|+..++.. +|+.++.+...- -.+.--+-++.+...|++.|+-|...+...+
T Consensus 93 r~~-----~~f~n-l~e~P~~dwA~tivr~------~l~D~~~~~~~~~L~~SSy~plA~ia~Ki~KEe~yH~rh~~~wl 160 (289)
T TIGR02156 93 TGK-----AKYSS-IFNYPTLTWADIGVIG------WLVDGAAIMNQTPLCRCSYGPYSRAMVRICKEESFHQRQGYEIM 160 (289)
T ss_pred cCh-----Hhhcc-chhCCCCCHHHHHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11111 122 223465554432 344455554321 1244567789999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhhHhhcCCC-------------CCC-CCHHHHHHHHHHHHHHHHHHcCCCCC---
Q 040427 214 SLLRTKLSEERVKALVKEAVEIEREFVCDALPCA-------------LVG-MNGELMSQYIEFVADRLLGALGYGKL--- 276 (329)
Q Consensus 214 ~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~~~-------------~~G-l~~~~~~~yi~y~an~~l~~lG~~~~--- 276 (329)
..|.+. .++-++.+++|++.=--++..+|+.+ .++ .+.+++.+--.-.....|..+|++-+
T Consensus 161 ~rL~~G--T~esr~r~Q~Ald~~Wp~~~emFg~~d~e~~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~agL~~P~~~ 238 (289)
T TIGR02156 161 LTLARG--TQEQRQMAQDALNRWWWPSLMMFGPHDADSPNSGQSTKWKIKRNSNDELRQKFIDATVPQLESLGLTIPDPE 238 (289)
T ss_pred HHHHcC--CHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 988743 45566777777776555655555211 223 46677766556677888999998764
Q ss_pred --CCC------CCCcchhhhh
Q 040427 277 --YGV------ANPFDWMELI 289 (329)
Q Consensus 277 --y~~------~nP~~w~~~~ 289 (329)
|+. -.|++|=+.+
T Consensus 239 ~~~~e~~~~~~~~~~~w~~~~ 259 (289)
T TIGR02156 239 LKQNEERGHWVYGEIDWDEFK 259 (289)
T ss_pred cccccccCCcCCCCCCHHHHH
Confidence 322 3577776544
No 20
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=97.50 E-value=0.015 Score=54.15 Aligned_cols=170 Identities=15% Similarity=-0.007 Sum_probs=101.0
Q ss_pred HHhCCCCCCccCccc-------cHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCH-----HHHHH
Q 040427 34 AEASFWTAEEVDLSQ-------DLRHWE----ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQV-----AEARA 97 (329)
Q Consensus 34 ~~~~fW~p~eid~~~-------D~~~~~----~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~-----~E~~~ 97 (329)
....-|.|.++=+-. +..+|+ +||+..+.++...+--=-.+.+.+ ..+...+.. ++...
T Consensus 23 ~~~~~W~p~d~lP~~~~~~f~~~~~~~~~~~~~L~~~~~~~l~~~~itEd~LP~Y~-----~~L~~~f~~~~~~~~~w~~ 97 (297)
T cd01050 23 PVEKDWQPHDFLPDSASEDFDLDVKELRERAAELPDDARVALVGNLLTEEALPTYH-----SMLNRLFGLDDESPTAWAR 97 (297)
T ss_pred cHhhccCCcccCCCCCCCChhhccccCchhhccCCHHHHHHHHHHHHHhhccHHHH-----HHHHHHcCcccccccHHHH
Confidence 334678887764433 456662 688887776655542212222222 223333322 78999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHhHh
Q 040427 98 FYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDG--SETFAERLIAFACVEGIFFSG 174 (329)
Q Consensus 98 ~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~--~~~~~~~lv~~~~lEgi~f~~ 174 (329)
|.....++|+.|+.+-..++-.-+ .||.. +.. .+...+..-++. +.+....++.-.+.|..- .+
T Consensus 98 w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~---le~---------~~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT-~v 164 (297)
T cd01050 98 WVRRWTAEENRHGDLLNKYLYLTGRVDPRA---LER---------TRQYLIGSGFDPGTDNSPYRGFVYTSFQELAT-RI 164 (297)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhCCCCHHH---HHH---------HHHHHHhCCCCCCCcccHHHHHHHHHHHHHHH-HH
Confidence 999999999999999888887532 24432 111 111123333331 112233433333556543 23
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH
Q 040427 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE 222 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~ 222 (329)
++.-+..+.+ .-=|-++++...|++||.+|..|...+++.+....+.
T Consensus 165 ~y~nl~~~a~-~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~ 211 (297)
T cd01050 165 SHRNTARLAG-AGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 3444444443 2458899999999999999999999999888865553
No 21
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=97.47 E-value=0.041 Score=51.72 Aligned_cols=165 Identities=12% Similarity=-0.029 Sum_probs=112.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHH-HHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD-SDE-KNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e-~~~ 129 (329)
.+..|++.-++.++..++.+...+-....+.+ .+....+.+.++..+.+|+++|.+|+.--+++...+..+ |.- -..
T Consensus 89 ~~~~ld~~w~~~l~~~l~p~~~~E~ga~~~~a-~~~r~~~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~ 167 (304)
T cd01058 89 LAEALSPEWREFLARYLGPLRHVEHGLQMANA-YVAQYAPSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDA 167 (304)
T ss_pred ChhhCCHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchH
Confidence 45679999999999999998888855544443 577888999999999999999999999888776555432 110 112
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHH
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCD 207 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~ 207 (329)
.-..|.++|.-+-=-+.+.+.+-. .+..+.+++.. ++|+++----|.-+-..+ .+| =.-+..++..+..||++|..
T Consensus 168 ~k~~W~~dp~Wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nG-D~~t~~l~~s~q~d~~Rh~~ 245 (304)
T cd01058 168 AKEAWEEDPAWQGLRELVEKLLVT-YDWGEAFVAQNLVFDPLVGELVRRELDRLAASNG-DTLTPLLTEFMLDDAQRHRR 245 (304)
T ss_pred HHHHHhcCchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHHHHHHH
Confidence 233466777655322333333222 24678888875 689985443344433332 233 13466688899999999999
Q ss_pred HHHHHHHHHhcc
Q 040427 208 FACLLYSLLRTK 219 (329)
Q Consensus 208 ~~~~l~~~l~~~ 219 (329)
.+..+++.+.++
T Consensus 246 ~~~alvk~l~~~ 257 (304)
T cd01058 246 WTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHcc
Confidence 999999988875
No 22
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=97.41 E-value=0.093 Score=48.29 Aligned_cols=206 Identities=13% Similarity=0.061 Sum_probs=130.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-HHHHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS-DEKNRLF 131 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~-~e~~~~~ 131 (329)
-..+|+..+..+.+.+..++-.+-+.+..+.. .....|..|.+..++..+-+|.-|+..+-.++..+.... ++-+-.|
T Consensus 7 ~~~~~~~~~~~L~~~l~~laD~elil~~r~~e-w~~~AP~LeediAl~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~ 85 (263)
T PF05138_consen 7 PDEMPEEYREALIRYLLRLADDELILGQRLSE-WCGHAPSLEEDIALANIAQDELGHARLLYRLLEELEGEGRDEDDLAF 85 (263)
T ss_dssp TSS--HHHHHHHHHHHHHHHHHHHHHHHHHHT-GGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHhChHHHhhhHHhH-HHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHh
Confidence 34689999999999998888777777666654 677889999999999999999999999999999993222 2211222
Q ss_pred HHhhhcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHH--HHHhcCCCcchHHHHHHHHhhhhhHHHH
Q 040427 132 HAIETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDF 208 (329)
Q Consensus 132 ~~~~~~p~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~l~g~~~~i~~I~rDE~~H~~~ 208 (329)
..-.. .. |+ ...++ ...+|+..++... |+..+..+. .| .+.--+-++.+.+.|.++|..|..+
T Consensus 86 ~R~~~--~~--rn---~~l~e~p~~dwa~~v~r~~------l~d~~~~~~l~~l-~~ssy~pla~~a~k~~kEe~yH~~h 151 (263)
T PF05138_consen 86 LRDAR--EF--RN---LLLFEQPNGDWADTVARQF------LFDRAGKVLLEAL-ADSSYEPLAAIAAKILKEEAYHLRH 151 (263)
T ss_dssp HHHTT--CS---S---SGGGGS---SHHHHHHHHH------HHHHHHHHHHHHH-TT-SBHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccc--hh--hh---hhhhccCCCCHHHHHHHHH------HHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 21111 00 00 01111 2234655544332 333333333 23 4556678999999999999999999
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcC---------CCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 040427 209 ACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALP---------CALVGMNGELMSQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 209 ~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~---------~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+..-++.|... .++-++.+.+|++.=-.++...|+ ..+.+.+.+.+.+--.-.....|..+|++-
T Consensus 152 ~~~w~~rL~~g--t~es~~r~q~Al~~~wp~~~elF~~~~~~~~l~~~~~~~~~~~lr~~w~~~v~~~l~~~gL~~ 225 (263)
T PF05138_consen 152 GEDWLRRLGDG--TEESRERMQAALDRLWPYTLELFGPDDSEEALAWGGRAPDNEELRQRWLAEVVPVLEEAGLEV 225 (263)
T ss_dssp HHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHCC-S-HCHHHHHCTTSSS-HHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999988733 234555555555544444444442 245677877786666667888999999875
No 23
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=97.36 E-value=0.13 Score=48.23 Aligned_cols=203 Identities=11% Similarity=0.011 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 040427 56 LTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIE 135 (329)
Q Consensus 56 L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~ 135 (329)
||+.-|..+.+.+..++-.+-+.+.-+. ......|.-|.+..++..+-+|.=|+..+-.+..+++.+.+ +....+.
T Consensus 35 mp~~yr~~L~~~l~~laDseLi~a~r~~-eWi~~AP~LeediAl~niaqDelGHa~~ly~~aeeLG~~r~---e~~~a~~ 110 (314)
T PRK13778 35 MPDAYRKTLIRQISQHAHSEIVGMLPEG-NWITRAPSLKRKAILLAKVQDEAGHGLYLYSAAETLGVSRE---ELIDDLL 110 (314)
T ss_pred cCHHHHHHHHHHHHHHhhHHHHhcchhc-cHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcH---HHHHHHh
Confidence 7888899999999888876655554443 46778899999999999999999999999999999965432 2333222
Q ss_pred hcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 136 TVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 136 ~~p~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
.. +.++.. ..+ ...+|+..++.. +|+.+++++... -.+---+-++.+...|++.|+-|...+...+
T Consensus 111 r~-----~~~f~n-~fe~P~~dwAdtvvr~------~L~D~a~~~~~~~L~~sSy~plA~~a~Ki~KEe~yH~rhg~~wl 178 (314)
T PRK13778 111 SG-----KAKYSS-IFNYPTLTWADVGVIG------WLVDGAAIMNQVPLCRCSYGPYARAMVRICKEESFHQRQGEEIL 178 (314)
T ss_pred cc-----hHHhcc-cccCCCCCHHHHHHHH------HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 222211 122 123465554432 234455544321 1244567789999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhhHhhcCC--------------CCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 040427 214 SLLRTKLSEERVKALVKEAVEIEREFVCDALPC--------------ALVGMNGELMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 214 ~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~~--------------~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
..|.+. .++-++.+++|++.=--++..+|+. .+...+.+++.+--.-.....|..+|+.-+
T Consensus 179 ~rL~~G--T~esr~r~Q~Ald~~Wp~~~emFg~~d~~s~~~~~~~~~Gik~~~n~eLR~~w~~~v~~~l~~~gL~vP 253 (314)
T PRK13778 179 LALARG--TPAQKQMAQDALNRWWWPALMMFGPPDDDSPHSAQSMAWKIKRFSNDELRQKFVDATVPQAEVLGLTLP 253 (314)
T ss_pred HHHHhC--CHHHHHHHHHHHHHHHHHHHhhcCCCcchhhhHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 988753 4566777777777655556555521 122256667765555567778899998754
No 24
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=97.35 E-value=0.011 Score=46.27 Aligned_cols=111 Identities=17% Similarity=0.013 Sum_probs=72.0
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
.+...++.++.+.++..++.+|..|.+....++..++.+|...... .. +.........+....+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~------------~~-~~~~~~~~~~~~~~~l~~~ 85 (130)
T cd00657 19 QLAARAPDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAH------------LL-AAYALPKTSDDPAEALRAA 85 (130)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------HH-HhcccCCCccCHHHHHHHH
Confidence 4566777899999999999999999999999999987655321001 00 1111112223344444444
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040427 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 165 ~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
...|.. ....|..+. ....-+.+.++++.+.+||..|..++...
T Consensus 86 ~~~E~~-~~~~y~~~~---~~~~d~~~~~~~~~~~~~E~~H~~~~~~~ 129 (130)
T cd00657 86 LEVEAR-AIAAYRELI---EQADDPELRRLLERILADEQRHAAWFRKL 129 (130)
T ss_pred HHHHHH-HHHHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567774 223333332 22225889999999999999999987754
No 25
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=96.53 E-value=0.06 Score=50.83 Aligned_cols=176 Identities=17% Similarity=0.075 Sum_probs=93.6
Q ss_pred hHHHHHHHHHH---hCCCCCCccCcccc-------HHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHH
Q 040427 25 PQIWEMYKKAE---ASFWTAEEVDLSQD-------LRHWE----ALTADEKHFVTHVLAFFAASDGIVLENLA---GRFM 87 (329)
Q Consensus 25 ~~~~~ly~k~~---~~fW~p~eid~~~D-------~~~~~----~L~~~Er~~~~~~l~~~~~~d~~v~~~l~---~~~~ 87 (329)
|++.+...... +.-|.|.++=+-.+ ..+|. +||+.-+.++...+ +..++|. ..+.
T Consensus 13 ~~v~~~~~~~l~~~~~~W~PhD~lP~~~~~~F~~~~~~w~~~~~~Lpd~~~~alv~~l--------lTEd~LPsY~~~l~ 84 (330)
T PF03405_consen 13 PVVEENLLRHLKPVEKDWQPHDFLPWSEGRNFFLGGKDWRPSQSTLPDDARVALVGNL--------LTEDNLPSYHRELA 84 (330)
T ss_dssp HHHHHHCHHHCH-CGGS--GGGGS-GCCSTTHHHCCHHHHHHHHTS-HHHHHHHHHHH--------HHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHhHHhhCCCccccCCCCccccHhHhcccCCHhhccCCHHHHHHHHHHH--------HhhhhhhHHHHHHH
Confidence 44555554432 46899987644333 44662 57777666554443 2223332 1222
Q ss_pred hhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--Chh
Q 040427 88 TEVQ--------VAEARAFYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDG--SET 156 (329)
Q Consensus 88 ~~~~--------~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~--~~~ 156 (329)
..+. ......|.+...++|++|+.+-..++-.-+ .||.+ ++. .|...+.+-++. ..+
T Consensus 85 ~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~-------lE~-----~r~~~i~~G~~~~~~~~ 152 (330)
T PF03405_consen 85 TLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSGRVDPVA-------LER-----TRMYLITAGFDPGFESD 152 (330)
T ss_dssp TSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCC-------CCH-----CCHHHHHH----S-TTH
T ss_pred hhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhCCCCHHH-------HHH-----HHHHHHhcCCCccCCCC
Confidence 2222 245789999999999999999887774322 24431 000 011122222221 111
Q ss_pred HHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH
Q 040427 157 FAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE 222 (329)
Q Consensus 157 ~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~ 222 (329)
.... ++|. +-|-. -..++.-+..++++--=|-++++...|++||.+|..|...++..+....|.
T Consensus 153 p~~~-~vYtsfQE~A-T~vsh~n~~~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l~~dPd 217 (330)
T PF03405_consen 153 PYLG-FVYTSFQERA-TQVSHRNTGRLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYLELDPD 217 (330)
T ss_dssp HHHH-HHHHHHHHHH-HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred hHHH-HHHHHHHHHH-HHHHHHHHHHHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCcH
Confidence 2233 2333 33432 122333344444333458899999999999999999999999888766543
No 26
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=96.31 E-value=0.61 Score=40.03 Aligned_cols=199 Identities=12% Similarity=0.101 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHh
Q 040427 57 TADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD--EKNRLFHAI 134 (329)
Q Consensus 57 ~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~--e~~~~~~~~ 134 (329)
|+.=|+++.++=+-..-++..--+|.. .+...+|. -+-=+..-+-||++|.+.|.--=+.+...|+ --.+.|...
T Consensus 4 s~~YkdAYSRINaIVIEGEqeA~~Nyi-~la~llP~--~~deL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 80 (219)
T PF11266_consen 4 SETYKDAYSRINAIVIEGEQEAHDNYI-SLAELLPD--QKDELIRLAKMENRHKKGFQACGRNLGVTPDMPFAKEFFSPL 80 (219)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-GG--GHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred hHHHHHHHHHhheeeeechHHHHHhHH-HHHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 456678888887777777766666664 35555544 3333666778999999999888888754442 112233322
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 135 ETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+ .++ .... ......++.-. ++|.. ..+.|.+.. .- .=|--.++-.-+.+||..|..||..-+
T Consensus 81 h~n---Fq~------A~~~-gk~~tCLlIQaliIE~F-AIaAYniYI--pV--AD~FARkITegVVkDEy~HLNfGe~WL 145 (219)
T PF11266_consen 81 HGN---FQR------AAAE-GKVVTCLLIQALIIECF-AIAAYNIYI--PV--ADPFARKITEGVVKDEYTHLNFGEEWL 145 (219)
T ss_dssp HHH---HHH------HHHT-T-HHHHHHHHHTHHHHH-HHHHHHHHG--GG--S-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHH------HHHc-CCeeehHHHHHHHHHHH-HHHHhhhce--ec--ccHHHHHHHHHHHhhHHHhcchHHHHH
Confidence 111 111 1111 11222222222 45542 122222211 00 001223466789999999999998766
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 040427 214 SLLRTKLSEERVKALVKEAVEIEREFVCDAL-PCALVGMNGELM-SQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+++++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .--..|.++|+..
T Consensus 146 k~~f~-~~k~el~~An~~nLPlv~~MLnqV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 207 (219)
T PF11266_consen 146 KANFE-QSKAELEEANRENLPLVWKMLNQVAADARVLGMEKEALVEDFMI-AYGEALSNIGFTT 207 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHH-HHHHHHHHHT--H
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 54432 2345555555555555555554332 336788987655 44543 3456788888864
No 27
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.54 E-value=0.38 Score=45.07 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=119.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQ--VAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+.--|-.-..++ .-|-.|-..+.+.+. +|++.-+++..+-+|++|+-+-+.-+..++.
T Consensus 72 ~~d~l~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 143 (355)
T PRK13654 72 DWDHLDPETRKEFIDFLERSCTAE-FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFGL------- 143 (355)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-------
Confidence 688999999998776653333322 222233345666666 8999999999999999999988777776642
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHH-HHHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFA-ERLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~~~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+.+.|.+.-+ | ++. -+.|.| ++-|-|-+ .=|..+| .|.+. ..+--+=+-+..=+.||.
T Consensus 144 ----~lDLgfLtk~k~-----Y----TfF~PkfIfYatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 209 (355)
T PRK13654 144 ----SLDLGFLTKKKK-----Y----TFFPPKFIFYATYLSEKIGY-WRYITIYRHLEKHPEHRFHPIFKFFENWCQDEN 209 (355)
T ss_pred ----cccchhhccCCc-----e----eeeCcceeeehhHhHhhhhH-HHHHHHHHHHHhCcccccCchHHHHHHHhcccc
Confidence 133343322110 0 111 112223 24566632 2344444 45554 344445566677899999
Q ss_pred hHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHhhHhhc-C--CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 204 LHCDFACLLYSL---LRTKLSEERVKALVKEAVEIEREFVCDAL-P--CALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~---l~~~~~~~~v~~~~~eav~~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++. |.+.+-..--...+.-+|=.-. |+.+.- + +..+||++.+....|--..|....++ ++-+.
T Consensus 210 RHGd~F~~lmraqP~ll~g~~~kLW~RFFLlsVfaTm-yl~d~~R~~Fy~alGlD~~~yD~~Vi~~Tne~s~rv-FP~~L 287 (355)
T PRK13654 210 RHGDFFALLMRAQPKLLKGWVNRLWIRFFLLAVFATM-YLRDHERPDFYEALGLDAREYDQEVIRKTNETSARV-FPVVL 287 (355)
T ss_pred hhHHHHHHHHhcCchhhcchHHHHHHHHHHHHHHhhe-eeecccchHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 999999988652 2222111111222222221100 110000 0 36789999999999988888888775 33344
Q ss_pred CCCCCc
Q 040427 278 GVANPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 288 dvd~P~ 293 (355)
T PRK13654 288 DVDDPR 293 (355)
T ss_pred cCCChH
Confidence 567884
No 28
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=95.32 E-value=0.76 Score=43.02 Aligned_cols=208 Identities=15% Similarity=0.127 Sum_probs=118.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQ--VAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+.--|-.-..++ .-|-.|-..+.+.+. +|.+.-+++..+-+|++|+-+-+.-+..++.
T Consensus 68 ~~d~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 139 (351)
T CHL00185 68 SWSNLDEKTKSLFVEFLERSCTAE-FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDFNL------- 139 (351)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 688999999998766653333322 222233345666774 4999999999999999999987777776642
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhH-HHHHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETF-AERLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~-~~~lv~~--~~lEgi~f~~~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+.+.|.+.-+ | ++ --+.|.| ++-|-|-+ .=|..+| .|.+. ..+--+=+-+..=+.||.
T Consensus 140 ----~lDLgfLtk~rk-----Y----TfF~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~FE~WCqDEn 205 (351)
T CHL00185 140 ----SLDLGFLTKSRK-----Y----TFFSPKFIFYATYLSEKIGY-WRYITIYRHLEKNPEYRIYPIFKFFESWCQDEN 205 (351)
T ss_pred ----cccchhhccCCc-----e----eeecccceehhhHHHhhhhh-hHHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 133343322100 0 11 1122323 24576632 2334444 45554 234445556677799999
Q ss_pred hHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhhHhhc-C--CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 204 LHCDFACLLYSLL---RTKLSEERVKALVKEAVEIEREFVCDAL-P--CALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~l---~~~~~~~~v~~~~~eav~~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++.- .+.+-..--...+.-+|=.-. |+.+.- + +..+||++.+....|--..|....++ ++-+.
T Consensus 206 RHGdfF~almraqP~ll~g~~~kLW~RFFLlsVfaTm-yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~a~rv-FP~~L 283 (351)
T CHL00185 206 RHGDFFAALLKSQPHLLNGWKARLWCRFFLLSVFATM-YLNDLQRSDFYAAIGLDARQFDMHVIRKTNESAARL-FPVVL 283 (351)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHh-eehhcchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 9999999886422 111111111122222221110 111100 0 36789999999999988888887775 33334
Q ss_pred CCCCCc
Q 040427 278 GVANPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 284 dvd~P~ 289 (351)
T CHL00185 284 DVDNPK 289 (351)
T ss_pred cCCCHH
Confidence 567885
No 29
>PRK14983 aldehyde decarbonylase; Provisional
Probab=95.15 E-value=1.3 Score=38.48 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHh
Q 040427 57 TADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD--EKNRLFHAI 134 (329)
Q Consensus 57 ~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~--e~~~~~~~~ 134 (329)
|+.=|+++.++=+-..-|+.---+|... +...+|. -+-=+..-+-||++|.+.|.--=+.+...|+ --.+.|...
T Consensus 14 s~~YkdAYSRINaIVIEGEqeA~dNyi~-la~llP~--~~dEL~rLakME~rH~kgF~aCGrNL~V~~Dm~fA~~fF~~L 90 (231)
T PRK14983 14 SETYKDAYSRINAIVIEGEQEAHDNYIS-LATLLPE--HAEELTRLAKMEMRHKKGFTACGRNLGVTPDMPFAKEFFSPL 90 (231)
T ss_pred cHHHHHHHHHhceeeEeccHHHHHhHHH-HHHHCcc--cHHHHHHHHHHHHHHHhHHHHHcccCcCCCCcHHHHHHHHHH
Confidence 3455677777765555555555555542 5555444 3334666778999999998777776653332 112333322
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 135 ETVPCVAKKATWALNWIDGSETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+ .+++ .... .....++.- .++|.. ..+.|.+..-.+ =|--.++-.-+.+||..|..||..=+
T Consensus 91 h~n---Fq~A------~~eg-kv~TCLlIQaLiIE~F-AIaAYniYIpVA----D~FARkITegVVkDEY~HLN~Ge~WL 155 (231)
T PRK14983 91 HGN---FQKA------AAEG-KVVTCLLIQALIIEAF-AIAAYNIYIPVA----DPFARKITEGVVKDEYLHLNFGEEWL 155 (231)
T ss_pred HHH---HHHH------HhcC-CeeehHHHHHHHHHHH-HHHHHhhccccc----cHHHHHHHHhHHhhHHHhcchHHHHH
Confidence 211 1111 1111 111122222 245542 112222211000 01123466778999999999998765
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 040427 214 SLLRTKLSEERVKALVKEAVEIEREFVCDAL-PCALVGMNGELM-SQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+++++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .--..|.++|+..
T Consensus 156 k~~f~-~~K~el~~AN~~nLPlv~~ML~qV~~Da~vL~Meke~lvedFmi-~Y~eAL~~IGf~t 217 (231)
T PRK14983 156 KANFE-TSKDELEEANKENLPLVWKMLNQVADDAAVLGMEKEALVEDFMI-AYGEALSNIGFST 217 (231)
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 54332 1334444444444444444443322 236788887655 44543 3456788888864
No 30
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=94.91 E-value=1.4 Score=41.08 Aligned_cols=208 Identities=13% Similarity=0.130 Sum_probs=117.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEV--QVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+.--|-.-..++ .-|-.|-..+.+.+ ++|.+.-++...+-+|++|+-+-+.-+..++.
T Consensus 62 ~~~~l~~e~r~~FidFLerScTaE-FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~l------- 133 (337)
T TIGR02029 62 SWEHIDGELRQAFIEFLERSCTSE-FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFGL------- 133 (337)
T ss_pred chhhCCHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcCc-------
Confidence 466799998987766553333322 12223334566666 66889999999999999999987777776642
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHH-HHHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFA-ERLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~~~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+.+.|.+.-+ | ++. -+.|.| ++-|-|-+ .=|..+| .|.+. ..+--+=+-+..=+.||.
T Consensus 134 ----~lDLgfLtk~r~-----Y----TfF~PkfI~YAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 199 (337)
T TIGR02029 134 ----ALDLGFLTKTRK-----Y----TFFRPKFIYYATYLSEKIGY-WRYITIYRHLEENPENQFYPIFKYFESWCQDEN 199 (337)
T ss_pred ----ccchhhhccCCc-----e----eeeccceeehhhHhHhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 133343322100 0 111 122323 24566632 2344444 45554 344445566677899999
Q ss_pred hHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhhHhhc-C--CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 204 LHCDFACLLYSLL---RTKLSEERVKALVKEAVEIEREFVCDAL-P--CALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~l---~~~~~~~~v~~~~~eav~~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++.- .+..-..--...+.-+|=.-. |+.+.- + ++.+||++.+....|--..|....++ ++-+.
T Consensus 200 RHGd~F~~lmrsqP~ll~g~~~kLW~RFFLLsVfaTm-yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 277 (337)
T TIGR02029 200 RHGDAFAALMRSQPQLLNNWKAKLWSRFFLLSVYSTM-YLRDHQRPGFYEALGLDATDFDLQVFRNTNETSGRI-FPMTL 277 (337)
T ss_pred hhHHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHHH-hhhhcccHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 9999999886522 211111111122222221111 111111 0 36789999999999998999888775 33344
Q ss_pred CCCCCc
Q 040427 278 GVANPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 278 dvd~P~ 283 (337)
T TIGR02029 278 NTEHPR 283 (337)
T ss_pred cCCCHH
Confidence 567884
No 31
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=94.48 E-value=0.21 Score=46.42 Aligned_cols=45 Identities=20% Similarity=0.110 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHhcCCCcc--hHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g--~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--++++.+=++ +++++.+++|||++|.+|....++...
T Consensus 86 FSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNkam~df~ 132 (337)
T TIGR02029 86 FSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNKALGDFG 132 (337)
T ss_pred hhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHHHHHHcC
Confidence 688888878888875555 999999999999999999887776553
No 32
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=94.41 E-value=0.2 Score=46.90 Aligned_cols=45 Identities=24% Similarity=0.152 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHhcCC--CcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRGL--MPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~--l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--++++.+ =|-+++++.+++|||++|.+|....++...
T Consensus 96 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 142 (355)
T PRK13654 96 FSGFLLYKELSRRLKDRNPLLAELFQLMARDEARHAGFLNKAMKDFG 142 (355)
T ss_pred hhhHHHHHHHHHhccccCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 688888878888776 899999999999999999999887776553
No 33
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.32 E-value=1.6 Score=40.54 Aligned_cols=208 Identities=13% Similarity=0.126 Sum_probs=117.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQV--AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
.|..++++.|..+.--|-.-..++ .-|-.|-..+.+.+.+ |++.-+++..+-+|++|+-+-+.-+..++.
T Consensus 52 ~~~~~~~e~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~l------- 123 (323)
T cd01047 52 AADKIDPELRQIFLEFLERSCTSE-FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFNL------- 123 (323)
T ss_pred hhhhCCHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcCc-------
Confidence 466688888887766553332222 2222333456677755 999999999999999999987777776632
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHH-HHHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFA-ERLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~~~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+.+.|.+.-+ | ++. -+.|.| ++-|-|-+ .=|..++ .|.+. ..+--+=+-+..=+.||.
T Consensus 124 ----~lDLgfLtk~r~-----Y----TfF~PkfI~YatYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIF~~Fe~WCqDEn 189 (323)
T cd01047 124 ----ALDLGFLTKTRK-----Y----TFFKPKFIFYATYLSEKIGY-WRYITIYRHLERNPENQFHPIFKYFENWCQDEN 189 (323)
T ss_pred ----ccchhhhccCCc-----e----eeeCccceeehhHhhhhhhh-HHHHHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 133343322100 0 111 112223 24566632 2334444 45554 344445556677799999
Q ss_pred hHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhhHhhc-C--CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 204 LHCDFACLLYSLL---RTKLSEERVKALVKEAVEIEREFVCDAL-P--CALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~l---~~~~~~~~v~~~~~eav~~E~~~~~~~~-~--~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++.- .+..-..--...+.-+|=.-. |+.+.- + ++.+||++.+....|--..|....++ ++-+.
T Consensus 190 RHGd~F~~lmrsqP~ll~~~~~kLW~RFFLlsVfaTm-yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tn~~s~rv-FP~~L 267 (323)
T cd01047 190 RHGDFFAALLRAQPHLLNDGKNKLWIRFFLLSVYATM-YLNDHQRPDFYEALGLDTTEFDMHVIRETNETAARV-FPAVL 267 (323)
T ss_pred hhhHHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhh-eeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 9999999876522 111111111122222221110 111000 0 36789999999999999999888775 33344
Q ss_pred CCCCCc
Q 040427 278 GVANPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 268 dvd~P~ 273 (323)
T cd01047 268 DVDNPE 273 (323)
T ss_pred cCCChH
Confidence 567885
No 34
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=94.30 E-value=0.2 Score=46.25 Aligned_cols=45 Identities=24% Similarity=0.158 Sum_probs=37.9
Q ss_pred HhHHHHHHHHHhcC--CCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~--~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+|||...--++++. .=|-+++++.+++|||++|.+|.-..++...
T Consensus 76 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df~ 122 (323)
T cd01047 76 FSGFLLYKELGRRLKNTNPVVAELFRLMARDEARHAGFLNKALSDFN 122 (323)
T ss_pred hhhHHHHHHHHHHcccCCcHHHHHHHHHhhhHHHHhhhHHHHHHHcC
Confidence 68888887888876 4499999999999999999999887766553
No 35
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=94.27 E-value=1 Score=43.19 Aligned_cols=115 Identities=17% Similarity=-0.050 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH
Q 040427 95 ARAFYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDG--SETFAERLIAFACVEGIF 171 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~--~~~~~~~lv~~~~lEgi~ 171 (329)
...|.....++|++|...-..+|-.-+ .|+...++ .+...+.+-++. ..+....++--.+-|..-
T Consensus 157 W~~Wvr~WTAEENRHgdlL~~YLylTgrVDm~~iE~------------t~q~li~~G~d~~~~~~py~~~vYtSFQErAT 224 (390)
T PLN00179 157 WARWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEK------------TIQYLIGSGMDPKTENNPYLGFIYTSFQERAT 224 (390)
T ss_pred hhhhccccccccchHHHHHHHHHhhccCcCHHHHHH------------HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556788888999999998776665332 24432111 111122233332 223445544323455543
Q ss_pred hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCH
Q 040427 172 FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE 222 (329)
Q Consensus 172 f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~ 222 (329)
+ .+..-+-.++.+.-=|-++++...|+.||.+|-.|..++...+.+-.|.
T Consensus 225 ~-VSH~NTarlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd 274 (390)
T PLN00179 225 F-ISHGNTARLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPD 274 (390)
T ss_pred H-HHhhhHHHHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCcc
Confidence 2 2222233344432247789999999999999999999999988865553
No 36
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=93.86 E-value=0.3 Score=45.58 Aligned_cols=44 Identities=27% Similarity=0.157 Sum_probs=37.7
Q ss_pred HhHHHHHHHHHhcC--CCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 173 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 173 ~~~F~~~~~l~~~~--~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
+|||...--++++. .=|-+++++.+++|||++|.+|.-..+...
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~df 137 (351)
T CHL00185 92 FSGFLLYKELSRKLKDKNPLLAEGFLLMSRDEARHAGFLNKAMSDF 137 (351)
T ss_pred hhhhHHHHHHHHHhccCCcHHHHHHHHHhhhhHHHhhhHHHHHHHc
Confidence 68888887888876 459999999999999999999988777655
No 37
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=93.55 E-value=0.069 Score=49.76 Aligned_cols=44 Identities=27% Similarity=0.166 Sum_probs=37.8
Q ss_pred HhHHHHHHHHHhcC--CCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 173 SGSFCAIFWLKKRG--LMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 173 ~~~F~~~~~l~~~~--~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
+|||...--++++. .=|-+++++.+++|||++|.+|.-..++..
T Consensus 92 FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df 137 (357)
T PLN02508 92 FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDF 137 (357)
T ss_pred cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHc
Confidence 68888887888876 459999999999999999999988777655
No 38
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=93.49 E-value=2.6 Score=34.33 Aligned_cols=106 Identities=12% Similarity=0.022 Sum_probs=68.6
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
..+..-.-+++..++..|+..|..|+.-+...+..+...|. .|.. . ..+.... + -
T Consensus 25 ~~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----------~~~~-----------~-~~~~~~~-l-~ 79 (134)
T cd01041 25 EKARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----------GPPI-----------G-IGDTLEN-L-K 79 (134)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----------CCCC-----------C-cchHHHH-H-H
Confidence 34455566888999999999999999999988888865552 1100 0 0000000 1 0
Q ss_pred HHHHHHH--hHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040427 165 ACVEGIF--FSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 165 ~~lEgi~--f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
..+++-. ....+.-+...++.-.-..++..+..|..||..|......++..
T Consensus 80 ~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~ 132 (134)
T cd01041 80 AAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALEN 132 (134)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1122211 12344445555777778999999999999999999988776644
No 39
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=93.49 E-value=1.3 Score=41.47 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=115.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQ--VAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNR 129 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~ 129 (329)
+|..|+++.|..+.--|-.-..++ .-|-.|-..+.+.+. +|.+.-+++..+-+|++|+-+-+.-+..++.
T Consensus 68 ~~~~l~~~~r~~FidFLerSctaE-FSGflLYKEl~rrlk~~nP~lae~F~lMaRDEARHAGFlNkam~Df~l------- 139 (357)
T PLN02508 68 AADKIQGPLRQIFIEFLERSCTAE-FSGFLLYKELGRRLKKTNPVVAEIFTLMSRDEARHAGFLNKALSDFNL------- 139 (357)
T ss_pred chhhCCHHHHHHHHHHHHhhhhhh-cccchHHHHHHHhcccCChHHHHHHHHhCchhHHHHhHHHHHHHHcCc-------
Confidence 466688888887765553322222 112223345666774 4999999999999999999988777776642
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHH-HHHHHH--HHHHHHHhHhHHHHHH-HHHhc--CCCcchHHHHHHHHhhhh
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFA-ERLIAF--ACVEGIFFSGSFCAIF-WLKKR--GLMPGLTFSNELISRDEG 203 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~-~~lv~~--~~lEgi~f~~~F~~~~-~l~~~--~~l~g~~~~i~~I~rDE~ 203 (329)
-.+...|.+.-+ | ++. -+.|.| ++-|-|-+ .=|..+| .|.+. ..+--+=+-+..=+.||.
T Consensus 140 ----~lDLgfLtk~rk-----Y----TfF~PkfIfYAtYLSEKIGY-wRYItIyRHLe~~Pe~r~~PIFk~Fe~WCqDEn 205 (357)
T PLN02508 140 ----ALDLGFLTKNRK-----Y----TFFKPKFIFYATYLSEKIGY-WRYITIYRHLQANPDYQLYPIFKYFENWCQDEN 205 (357)
T ss_pred ----cccchhhcccCc-----e----eeeCcceeehhhHhhhhhhh-hhHhHHHHHHHhCcccccchHHHHHHHHhcccc
Confidence 123333322100 0 111 111223 24566632 2344444 45554 344445556677799999
Q ss_pred hHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhhHhhc---CCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 204 LHCDFACLLYSLL---RTKLSEERVKALVKEAVEIEREFVCDAL---PCALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 204 ~H~~~~~~l~~~l---~~~~~~~~v~~~~~eav~~E~~~~~~~~---~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
+|+.+...+++.- .+..-..--...+.-+|=.-. |+.+.- -++.+||+..+....|--..|....++ ++-+.
T Consensus 206 RHGd~Fa~lmraqP~ll~g~~~kLW~RFFLLsVfaTM-yl~d~~R~~Fy~alGld~~~yD~~Vi~~Tne~s~rv-FP~~L 283 (357)
T PLN02508 206 RHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVTM-YLNDHQRTAFYEGIGLNTKQFNMHVIIETNRTTARI-FPAVL 283 (357)
T ss_pred hhHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHHHh-eeeccchHHHHHHhCCCHHHhhHHHHHHhhHHHHhh-CCeee
Confidence 9999999876422 111101111122222221100 111000 036789999999999888888887775 33334
Q ss_pred CCCCCc
Q 040427 278 GVANPF 283 (329)
Q Consensus 278 ~~~nP~ 283 (329)
.+.||-
T Consensus 284 dvd~P~ 289 (357)
T PLN02508 284 DVENPE 289 (357)
T ss_pred cCCCHH
Confidence 567884
No 40
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=6.4 Score=35.98 Aligned_cols=217 Identities=12% Similarity=0.110 Sum_probs=130.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHH
Q 040427 55 ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY-IKDSDEKNRLFHA 133 (329)
Q Consensus 55 ~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~-~~d~~e~~~~~~~ 133 (329)
.+|+.-++++.+.++.++-.+-+...-..+ -..++|.-|.+..++.-.-+|.-|..-+=++.+++ +...+ +.+..
T Consensus 11 ~~p~~~~~tLi~~i~~~ad~elv~~~r~~e-W~~~AP~Le~~~ala~~vqDe~GHg~~l~~laeel~Gk~~~---d~la~ 86 (265)
T COG3396 11 WMPEAYRRTLIRLISQLADSELVLALREGE-WLGHAPTLEEDLALANIVQDEMGHGWLLYRLAEELEGKGRE---DDLAY 86 (265)
T ss_pred hCCHHHHHHHHHHHHHhcchHHHHhccCCc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH---HHHHH
Confidence 488999999999999988877666544433 45678888999999999999999999999999999 54432 33433
Q ss_pred hhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHH-HhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040427 134 IETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWL-KKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 134 ~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l-~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
.+. +.. ++.. +.+ +. .-+++-.++ +. +++-+++++..- -.+--.+-++.+...|++-|.-|..++...
T Consensus 87 ~r~-g~~-k~n~-~~n-~P-~~~Wadt~~-~~-----fLvD~~~~~~l~~l~~ssy~PlA~~a~k~~kEe~fHl~~~~~~ 155 (265)
T COG3396 87 LRD-GRH-KRNS-LFN-LP-TGDWADTIV-RG-----FLVDGAAIYQLEALADSSYGPLARAAQKICKEEEFHLRHGKTW 155 (265)
T ss_pred Hhh-hHH-HHHH-HHc-CC-CccHHHHHH-HH-----HHHhHHHHHHHHHHHhccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 322 211 1111 111 11 113433322 22 233334443321 123456778999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcC------------CCCCCCCHHHH-HHHHHHHHHHHHHHcCCCCC---
Q 040427 213 YSLLRTKLSEERVKALVKEAVEIEREFVCDALP------------CALVGMNGELM-SQYIEFVADRLLGALGYGKL--- 276 (329)
Q Consensus 213 ~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~------------~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~~--- 276 (329)
+..+.++-. +.++++.+|++-=--.+-.+|+ ..|--.+.+++ .+||+ ..+..|..+|+.-+
T Consensus 156 l~~l~~gT~--~~~~~~Q~AlN~wwp~~lemf~~~~~~~~~~a~~~gI~~~~n~~Lrq~~i~-~~~~~l~~~gltvPd~~ 232 (265)
T COG3396 156 LKRLANGTE--ESRQMAQAALNRWWPRALEMFGPSASESELSAAKWGIKVDPNDELRQAWIK-EVNEELRELGLTVPDPN 232 (265)
T ss_pred HHHHHhcCH--HHHHHHHHHHHHHHHHHHHHhCcccccchhHHHHcCCCCCCHHHHHHHHHH-HHHHHHHHhcCCCCccc
Confidence 998886543 3333333333311111111121 12222332444 55666 77888999996653
Q ss_pred --CC------CCCCcchhhhh
Q 040427 277 --YG------VANPFDWMELI 289 (329)
Q Consensus 277 --y~------~~nP~~w~~~~ 289 (329)
|+ +..+.+|.+.+
T Consensus 233 l~~n~~~g~h~~~~~~~l~~~ 253 (265)
T COG3396 233 LHYNGKRGHHTEHLGDWLAEM 253 (265)
T ss_pred cccccccCCcccchhhHHHHH
Confidence 22 24566777654
No 41
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=93.16 E-value=6.7 Score=35.85 Aligned_cols=105 Identities=18% Similarity=0.093 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHH---HHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHHhHh
Q 040427 99 YGFQIAIENIHSEMYSLLLETYIKDSDE---KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF-ACVEGIFFSG 174 (329)
Q Consensus 99 ~~~q~~~E~iH~~sYs~il~~~~~d~~e---~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~f~~ 174 (329)
+...+.+|+.|-..+..-|+.++.+-.+ -..+++.... +..++..++... ..+|+--+=.
T Consensus 104 ~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~~~~~----------------t~~dl~~R~A~vp~~~EArGLD~ 167 (253)
T PF04305_consen 104 WLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWEAAEQ----------------TAHDLLARMALVPRVLEARGLDV 167 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHH----------------hccCHHHHHHHHHHHHHhhCCCC
Confidence 4467789999999999999999743211 1122222211 111333343333 2567655433
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC
Q 040427 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL 220 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~ 220 (329)
+=.++-.|...|-. .++.+++.|.+||.-|+.+|..=++.+.+..
T Consensus 168 ~p~~~~k~~~~gD~-~sa~iL~~I~~DEi~HV~~G~rWf~~~c~~~ 212 (253)
T PF04305_consen 168 TPFIIEKFRSAGDE-ESAAILEIILRDEIGHVAIGNRWFRYLCEQR 212 (253)
T ss_pred CHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 33444445555544 7889999999999999999999999888643
No 42
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=11 Score=32.53 Aligned_cols=125 Identities=17% Similarity=0.088 Sum_probs=74.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHh--hhcHHHHHHHHHHHHhhcCChhHHHHH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAI--ETVPCVAKKATWALNWIDGSETFAERL 161 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~--~~~p~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
..++..+++++++..+...+.+|..|...++.++..+...+..-++...+. ...+.++. . ..+....++.+++
T Consensus 44 ~~lae~~~~~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~I 118 (176)
T COG1633 44 EELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQP----G-KEMEKSVSYLEAI 118 (176)
T ss_pred HHHHHhcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCc----c-cccccchhHHHHH
Confidence 357789999999999999999999999999999999965442111111111 11111110 0 0233333444443
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 162 v~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
-+ ++++-.....|+..... ...=++...+++.++.||.-|.......++.+.
T Consensus 119 ~~--a~~~E~~t~~~Y~~~~~--~~~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 119 EA--AMEAEKDTIEFYEELLD--ELVNEEAKKLFKTIADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred HH--HHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32 22222222222222211 222367888999999999999999888877654
No 43
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=89.45 E-value=16 Score=33.07 Aligned_cols=175 Identities=10% Similarity=0.001 Sum_probs=106.9
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 040427 86 FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
-....|.-|.+..++..+-+|.=|++.+-.+...+..+.+ +.+.. ...+.- -|+-.+.+. ...+|+..++..
T Consensus 15 W~~~AP~LEediAlanialD~lGhAr~~y~~a~el~g~~e---d~La~-~R~~~~-frn~~l~e~--P~gdwa~tv~r~- 86 (237)
T TIGR02158 15 WCGHAPELEEDIALANIALDLLGHARMFLSLAGQLGGGDE---DTLAF-FRDEAE-FRNLRLTEL--PNGDFALTIARQ- 86 (237)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH---HHHHH-hcChHH-hhhhHHHhC--CCCCHHHHHHHH-
Confidence 4567788899999999989999999999999999954321 22221 122221 122222222 123465554432
Q ss_pred HHHHHHhHhHHHHHHH-HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 040427 166 CVEGIFFSGSFCAIFW-LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 166 ~lEgi~f~~~F~~~~~-l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~ 244 (329)
+|+..+..+.. --.+.--+-++.+..+|.+.|.-|...+...+..|.+. .++-++.+++|++.=--++...|
T Consensus 87 -----~l~d~~~~~~l~~L~~ss~~pla~ia~K~~kEe~yH~~h~~~w~~rL~~g--t~es~~r~Q~Ald~~wp~~~elF 159 (237)
T TIGR02158 87 -----FLYDAYKVLLLEALTQSRDVPLAAIAAKALKEARYHLQHAKTWLERLGLG--TEESHRRLQEALNELWPYTAELF 159 (237)
T ss_pred -----HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHc
Confidence 34445554432 11245567899999999999999999999999888754 34455556666665444544444
Q ss_pred CC---------CCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 040427 245 PC---------ALVGMNGELMSQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 245 ~~---------~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+. ..+..+.+++.+--.-.....|..+|++-
T Consensus 160 ~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~~ 199 (237)
T TIGR02158 160 EAGPIDEELAEAGIAVDPATLQAAWEKEVNAVLNEATLTL 199 (237)
T ss_pred CCCchHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 21 11223455565544445667778888875
No 44
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=89.41 E-value=9.7 Score=30.53 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=35.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~ 124 (329)
..++..+++|+.+-.+...+-+|.-|.+.+..++...+.+|
T Consensus 18 ~~la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 18 RKLAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 45777889999999999999999999999999999886654
No 45
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=85.09 E-value=19 Score=29.86 Aligned_cols=115 Identities=16% Similarity=0.091 Sum_probs=64.8
Q ss_pred hhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHH
Q 040427 81 NLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAER 160 (329)
Q Consensus 81 ~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~ 160 (329)
.+-..++....+++.+..+...+.+|-.|++....++..++.+|.- ...... .. ..|.........+...
T Consensus 35 Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~----~~~~~~--~~---~~~~~~~~~~~~~~~~- 104 (154)
T cd07908 35 YIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRY----RSSSSD--KF---TYWTGKYVNYGESIKE- 104 (154)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc----hhhccc--cC---CcCCccccCCccCHHH-
Confidence 3333444555679999999999999999999999999999776641 110000 00 0011111111111211
Q ss_pred HHHHH-HHH--HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 040427 161 LIAFA-CVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 211 (329)
Q Consensus 161 lv~~~-~lE--gi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~ 211 (329)
++-+. -.| ++-+|..-+- .-.=+.+..++..|+.||..|......
T Consensus 105 ~L~~~~~~E~~ai~~Y~~~~~------~~~d~~~r~ll~~I~~eE~~H~~~L~~ 152 (154)
T cd07908 105 MLKLDIASEKAAIAKYKRQAE------TIKDPYIRALLNRIILDEKLHIKILEE 152 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222 233 3444433222 122377888999999999999876544
No 46
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=82.22 E-value=8.4 Score=32.03 Aligned_cols=61 Identities=20% Similarity=0.152 Sum_probs=47.3
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-------------------HHHHHHHHHHHHHHHHHhhHh
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS-------------------EERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------------------~~~v~~~~~eav~~E~~~~~~ 242 (329)
+..++.-|.+++++..+++||..|......++..+-..+. ...+.++++.++..|..-++.
T Consensus 40 ~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~ 119 (154)
T cd07908 40 LISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAK 119 (154)
T ss_pred HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCcCCccccCCccCHHHHHHHHHHHHHHHHHH
Confidence 4445577999999999999999999999999888754322 124567888999999887743
No 47
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=81.55 E-value=9.6 Score=30.21 Aligned_cols=112 Identities=14% Similarity=0.123 Sum_probs=61.8
Q ss_pred HHHhhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC-hhHHHHH
Q 040427 85 RFMTEVQV--AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAERL 161 (329)
Q Consensus 85 ~~~~~~~~--~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~-~~~~~~l 161 (329)
.++..+++ |+++.++..-+.+|..|...+..++......... .+......+... ...... ..-....
T Consensus 19 ~~a~~~~~~~p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 88 (137)
T PF02915_consen 19 ELAEKAKDEGPELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEP---PFLEEKVEYSFF-------PKLEEETDENLEEA 88 (137)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHT---HCHCCCCCHCCC-------CTCCSSHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc---chhhhhhhhhhc-------chhhhhhhHHHHHH
Confidence 45555566 8899999999999999999999999987432210 000000000000 000000 0001111
Q ss_pred HHHH-H--HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040427 162 IAFA-C--VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 162 v~~~-~--lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
+... . .+++.+|. .++..---|...+++..|++||..|......+
T Consensus 89 l~~a~~~E~~~~~~Y~------~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 89 LEMAIKEEKDAYEFYA------ELARKAPDPEIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHTHHHHHH------HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2121 1 22233322 22333334788899999999999999977665
No 48
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=81.26 E-value=32 Score=28.98 Aligned_cols=105 Identities=18% Similarity=0.122 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q 040427 91 QVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGI 170 (329)
Q Consensus 91 ~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi 170 (329)
..++.+..+...+.+|--|.+..+..+..++.++.- ..| +-+ .+....+...-+......|.-
T Consensus 51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g----~pw--~~~-----------yv~~~~d~~~~L~~ni~aE~~ 113 (156)
T cd01051 51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQG----VPW--TAA-----------YIQSSGNLVADLRSNIAAESR 113 (156)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CcC--CCc-----------ccCCCCCHHHHHHHHHHHHHH
Confidence 668999999999999999999999999988755431 122 111 111111222222222223321
Q ss_pred HhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 171 FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 171 ~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
.-..|.-++.+.. =|++..++..|..||..|..-...++..+
T Consensus 114 -Ai~~Y~~l~~~~~---Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 114 -ARLTYERLYEMTD---DPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred -HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1112222222333 29999999999999999999888777654
No 49
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=81.12 E-value=25 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=33.4
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
.++..+++++++.++...+.+|..|.+.+..++..+.
T Consensus 19 ~~a~~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~ 55 (139)
T cd01045 19 ELAEKAKDPELKKLFEELAEEEKEHAERLEELYEKLF 55 (139)
T ss_pred HHHhHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888899999999999999999999999999884
No 50
>TIGR03225 benzo_boxB benzoyl-CoA oxygenase, B subunit. Members of this protein family are BoxB, the B subunit of benzoyl-CoA oxygenase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation.
Probab=76.26 E-value=79 Score=30.73 Aligned_cols=209 Identities=12% Similarity=0.102 Sum_probs=111.1
Q ss_pred cCccccH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 040427 44 VDLSQDL--RHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLE-TY 120 (329)
Q Consensus 44 id~~~D~--~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~-~~ 120 (329)
|.+.+.+ ..|+.+|.+-|..+.+++....-.+-.-.+.. ..+...+++---...+.....+|.+|.-+-.++|. -+
T Consensus 86 I~fG~hkGe~awqevPgE~r~~L~riIv~QgDtEpASVEQq-r~lg~taPSlyD~rnlfqvnvEEgRHlWaMvyLL~k~F 164 (471)
T TIGR03225 86 IPFGEHKGEPAWQEVPGEYRSMLRRLIVIQGDTEPASVEQQ-RHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHKYF 164 (471)
T ss_pred eccccccccchHhhCCHHHHHHHHHHHhhccCCCchhHHHH-HHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 56999999999999999865433221111111 12333444443444444455788999999999994 44
Q ss_pred cCChH-HHHHHHHHh---hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHH
Q 040427 121 IKDSD-EKNRLFHAI---ETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSN 195 (329)
Q Consensus 121 ~~d~~-e~~~~~~~~---~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i 195 (329)
+.|.. +-+++...- .++|.+ +...+.+.+-.+..++|. ++-.. |-.-+.+++..+--| ++...
T Consensus 165 G~dGreeAe~LL~rrsGd~d~PRi-------L~AFN~~t~dWlsffmFT~ftDRd----Gk~QL~alaeS~FdP-LaRt~ 232 (471)
T TIGR03225 165 GRDGREEAEALLRRRSGDADNPRI-------LGAFNEKTPDWLSFFMFTYFTDRD----GKMQLAALAESGFDP-LSRTC 232 (471)
T ss_pred CCccHHHHHHHHHhhcCCCCCcch-------hhhccCCCccHHHHhHhheeeccc----chhhHHHHHhcCCch-Hhhhh
Confidence 44432 222333321 223332 233333222345555554 34433 223344556665444 66777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 040427 196 ELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 196 ~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+.+...|..|.-+|-.=+..+.++-+ +++.++-. +.- ..+ .+.-+|+-..+..|+-+---+.|.-+|-+.
T Consensus 233 rfMltEEahHmfvGetGv~rviqrtc-----e~m~~~~~-~D~--~~i--r~~G~IdLptiQk~lN~wy~~~lDlFG~e~ 302 (471)
T TIGR03225 233 RFMLTEEAHHMFVGESGVGRVIERTC-----QVMKENGT-DDP--YRI--RALGVIDLPTIQKYLNFHYSVTSDLFGAEV 302 (471)
T ss_pred HHHhhhhHhHhhhhhHHHHHHHHHHH-----HHHHhcCC-Cch--hhh--hhccCcchHHHHHHHHhhccHHHHhhcchh
Confidence 99999999999998765554443311 11111000 000 001 122234556678888877777777777664
No 51
>PF10118 Metal_hydrol: Predicted metal-dependent hydrolase; InterPro: IPR016516 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function
Probab=74.74 E-value=68 Score=29.25 Aligned_cols=138 Identities=16% Similarity=0.089 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHh
Q 040427 71 FAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNW 150 (329)
Q Consensus 71 ~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~ 150 (329)
|-.+|....+.. ....+.+++|+.+.=..-++.+|+.|++.=..+++.+.. . -|+ -.+.+..........
T Consensus 36 fP~GE~ffi~sv-r~~~~~i~D~~L~~~i~~FIgQEA~H~r~H~~~n~~l~~-~-----G~~---~~~~~~~~~~~~~~~ 105 (253)
T PF10118_consen 36 FPEGERFFIRSV-RRARPQIKDPELREEIKGFIGQEAMHSREHRKFNEALEA-Q-----GYD---VRPFLEKMEKLFLKF 105 (253)
T ss_pred hhhhHHHHHHHH-HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-----CCC---CcHHHHHHHHHHHHH
Confidence 445666555554 356778899999888888889999999987777776621 0 011 011111111111223
Q ss_pred hcCChhHHHHHHHHHHHHHHHhHhHHHHHH--HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 151 IDGSETFAERLIAFACVEGIFFSGSFCAIF--WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 151 ~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~--~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
+....+...+|..-+++|..-..-|=..+- .+-..|.=|.+.++..|=+--|.-|.+.+--+++.+..
T Consensus 106 l~~~~~~~~~La~taalEH~TA~la~~~L~~~~~~~~~adp~~~~Lw~WHa~EE~EHksVAfDvy~~~~g 175 (253)
T PF10118_consen 106 LEKRLSLKFQLAYTAALEHFTAVLAEWLLNNPELLFAGADPEMRDLWRWHAAEEVEHKSVAFDVYQAVGG 175 (253)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322123334444445788864432222221 11124556789999999999999999988888888765
No 52
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=68.17 E-value=67 Score=26.43 Aligned_cols=56 Identities=13% Similarity=0.027 Sum_probs=41.9
Q ss_pred CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC--------C--HHHHHHHHHHHHHHHHHhhH
Q 040427 186 GLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL--------S--EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 186 ~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~--~~~v~~~~~eav~~E~~~~~ 241 (329)
.-+||++..++..+.+|..|..-...-+..+-..+ + ...+.++++.+++.|+..+.
T Consensus 32 ~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~~~~~l~~al~~E~~~~~ 97 (156)
T cd01055 32 KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFESLLEVFEAALEHEQKVTE 97 (156)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999997666554432111 1 13577899999999998554
No 53
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=64.74 E-value=71 Score=25.49 Aligned_cols=96 Identities=13% Similarity=-0.068 Sum_probs=58.5
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 040427 86 FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
.+..-.-+++..++..|+..|..|++.|..++..+ |....+.+.....
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l~~i---~~~~~~~le~a~~----------------------------- 73 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELLGKV---SEDTKENLEMMLE----------------------------- 73 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccHHHHHHHHHH-----------------------------
Confidence 34444558899999999999999999887755332 1100111111100
Q ss_pred HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040427 166 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 166 ~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
.|.-- ...+.-+...++.-....+...++.|.++|..|......++..
T Consensus 74 -~E~~~-~~~~~~~~~~A~~egd~~~~~~~~~~~~~E~~H~~~~~~~l~~ 121 (123)
T cd01046 74 -GEAGA-NEGKKDAATEAKAEGLDEAHDFFHEAAKDEARHGKMLKGLLER 121 (123)
T ss_pred -hHHHH-HHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11100 0112223334555667888999999999999999988776653
No 54
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=63.78 E-value=3.8 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=16.4
Q ss_pred HHhhHhhcCCCCCCCCHHHHHHHHHHH
Q 040427 237 REFVCDALPCALVGMNGELMSQYIEFV 263 (329)
Q Consensus 237 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~ 263 (329)
.+|+.-+....-.|++++++++|+++.
T Consensus 3 ~EW~~Li~eA~~~Gls~eeir~FL~~~ 29 (30)
T PF08671_consen 3 EEWVELIKEAKESGLSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445543333345799999999999864
No 55
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=61.82 E-value=52 Score=26.86 Aligned_cols=58 Identities=17% Similarity=0.059 Sum_probs=45.4
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+.-++.||..|..-....+..+-..|+ ...+.++++.+++.|...+.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~~l~~~l~~E~~~~~ 98 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPEMLENDLALEYEAIA 98 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999988888776654322 12477889999999987664
No 56
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=61.53 E-value=14 Score=29.15 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 167 lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
.+|..||..++-.. ...| |.+..++..+++||..|..+...+++.+
T Consensus 11 ~~~~~~Y~~~a~~~--~~~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~ 56 (137)
T PF02915_consen 11 LEAAKFYRELAEKA--KDEG--PELKELFRRLAEEEQEHAKFLEKLLRKL 56 (137)
T ss_dssp HHHHHHHHHHHHHH--HHTT--HHHHHHHHHHHHHHHHHHHHHHHHHCHC
T ss_pred HHHHHHHHHHHHHh--hhcc--cHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555655555442 3334 8899999999999999999999888766
No 57
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=60.96 E-value=74 Score=25.37 Aligned_cols=54 Identities=22% Similarity=0.138 Sum_probs=40.6
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~ 240 (329)
.++.--+|+++..++.++..|..|......++ ...+ ..+.+.++.+++.|..-.
T Consensus 26 ~a~~eG~~~~A~~f~~~a~eE~~HA~~~~~~l----~~i~-~~~~~~le~a~~~E~~~~ 79 (123)
T cd01046 26 VAQREGYPEVAEELKRIAMEEAEHAARFAELL----GKVS-EDTKENLEMMLEGEAGAN 79 (123)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hcCc-ccHHHHHHHHHHhHHHHH
Confidence 45666689999999999999999998666543 2222 567788888888887544
No 58
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=56.65 E-value=83 Score=25.30 Aligned_cols=57 Identities=12% Similarity=-0.080 Sum_probs=42.4
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHH
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL-----SEERVKALVKEAVEIERE 238 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~-----~~~~v~~~~~eav~~E~~ 238 (329)
.+++--++|++..++.++.+|..|.......+..+-..+ +...+.+.++.+.+.|..
T Consensus 26 ~a~~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E~~ 87 (134)
T cd01041 26 KARKEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGETY 87 (134)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhhHH
Confidence 355555999999999999999999987776665553221 234677888888888873
No 59
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=55.84 E-value=85 Score=29.89 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=32.2
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
.++....+|-....++..+.+|++|..+|+.++..++
T Consensus 176 ~~a~~~~DpvL~~il~~IA~DE~rH~~fy~~iv~~~l 212 (330)
T PF03405_consen 176 RLAKQAGDPVLAQILGRIAADEARHEAFYRNIVEAYL 212 (330)
T ss_dssp HHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4555558899999999999999999999999999875
No 60
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=55.06 E-value=93 Score=29.20 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=33.5
Q ss_pred HHHhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH
Q 040427 85 RFMTEV--QVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSD 125 (329)
Q Consensus 85 ~~~~~~--~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~-d~~ 125 (329)
.+.+.+ ..|-.+..++..+.+|++|..+|+.+++.++. +|.
T Consensus 168 nl~~~a~~gdPvL~~i~~~IA~DE~rH~~fy~~~v~~~le~dp~ 211 (297)
T cd01050 168 NTARLAGAGDPVLAKLLGRIAADEARHEAFYRDIVEALFELDPD 211 (297)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 455556 78888999999999999999999999998752 443
No 61
>PF14518 Haem_oxygenas_2: Iron-containing redox enzyme; PDB: 3BJD_B.
Probab=53.49 E-value=55 Score=25.04 Aligned_cols=77 Identities=18% Similarity=0.098 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHhhhc-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHh
Q 040427 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETV-PCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184 (329)
Q Consensus 106 E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~-p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~ 184 (329)
+..|...|.++++.++.|+... ...... |....-..+..........+...+-++..+|++.....=...-.+.+
T Consensus 15 ~~~H~~Lf~~~L~~~Gi~~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lG~~~~~E~~~~~~~~~~~~~l~r 90 (106)
T PF14518_consen 15 ERSHPELFRRFLRALGIDDEPG----AYRDPYPPETLALINLFLALCLHRSHYPEALGALLATESSVPQIYRRLIKGLRR 90 (106)
T ss_dssp GG-HHHHHHHHHHHTT-----T----T-----HHHHHHHHHHHHHH--H-SSTHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCCCccc----cccccCCHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 3479999999999998665411 111111 22222222222222222234455555668888754432222334454
Q ss_pred cC
Q 040427 185 RG 186 (329)
Q Consensus 185 ~~ 186 (329)
-|
T Consensus 91 ~g 92 (106)
T PF14518_consen 91 LG 92 (106)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 62
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=52.55 E-value=16 Score=24.65 Aligned_cols=22 Identities=23% Similarity=0.662 Sum_probs=18.4
Q ss_pred ccHHHHhcCCHHHHHHHHHHHH
Q 040427 48 QDLRHWEALTADEKHFVTHVLA 69 (329)
Q Consensus 48 ~D~~~~~~L~~~Er~~~~~~l~ 69 (329)
+.+.+|..|++.+|..+...|.
T Consensus 25 dEI~~W~~~s~~er~~i~~~l~ 46 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILARLR 46 (51)
T ss_pred HHHHHHhhCCHHHHHHHHHHHH
Confidence 4678999999999998877664
No 63
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=49.74 E-value=1.5e+02 Score=24.90 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=31.5
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
.++..+.+|.++..+.+.+.+|..|.+.|...++.+
T Consensus 120 ~l~~~~~Dp~v~~~l~~I~~rE~~H~~~f~~~l~~~ 155 (156)
T cd01051 120 RLYEMTDDPGVKDTLSFLLVREIVHQNAFGKALESL 155 (156)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667899999999999999999999999998865
No 64
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=49.41 E-value=89 Score=30.28 Aligned_cols=42 Identities=26% Similarity=0.293 Sum_probs=34.2
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI-KDSDE 126 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e 126 (329)
+++....+|-+....+..+.+|++|..+|+++++.++ .||+.
T Consensus 233 rlA~~~gDp~la~icg~IAaDE~rHe~fY~~iV~~~le~dPd~ 275 (390)
T PLN00179 233 RLAKEHGDAKLAKICGTIAADEKRHETAYTRIVEKLFEIDPDG 275 (390)
T ss_pred HHHHhcCChHHHHHHHHHhccHHHHHHHHHHHHHHHHhhCccH
Confidence 4555556888888899999999999999999999886 35653
No 65
>PF13668 Ferritin_2: Ferritin-like domain
Probab=48.38 E-value=1.4e+02 Score=23.89 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=58.7
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 040427 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLE--TYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFAC 166 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~--~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~ 166 (329)
...+++.+.++.....+|..|.+..+..+. .-+..| -|+. -..-+.++.++.. +-..
T Consensus 34 ~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~-----~~~~-------------~~~~~~~~~~~L~---~A~~ 92 (137)
T PF13668_consen 34 AALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPP-----AYDF-------------PFDPFTDDASFLR---LAYT 92 (137)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC-----cccc-------------ccCCCCCHHHHHH---HHHH
Confidence 456788888999999999999999888885 111222 1332 0001112222221 1224
Q ss_pred HHHH--HhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 167 VEGI--FFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 167 lEgi--~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
+|.+ -+|.|.+.. -.=|.+..+..-|...|..|......++
T Consensus 93 ~E~~~~~~Y~g~~~~------~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 93 LEDVGVSAYKGAAPQ------IEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5654 233333222 1136688899999999999999877664
No 66
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=46.97 E-value=62 Score=24.23 Aligned_cols=32 Identities=22% Similarity=0.065 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 040427 188 MPGLTFSNELISRDEGLHCDFACLLYSLLRTK 219 (329)
Q Consensus 188 l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
-|++.+++..++.||..|......++..+-..
T Consensus 26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~ 57 (130)
T cd00657 26 DPDLKDELLEIADEERRHADALAERLRELGGT 57 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999988776533
No 67
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=46.71 E-value=41 Score=30.19 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=29.5
Q ss_pred HHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 040427 179 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK 219 (329)
Q Consensus 179 ~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
.|++ ..+.-.....+|+-|+++|.+|....+++++.+-..
T Consensus 19 ~ySi-~~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~ 58 (227)
T PF12902_consen 19 LYSI-KPGTNEEARNLIRSVAIEEMLHLSLAANLLNALGGS 58 (227)
T ss_dssp HHHB-S-TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred Hccc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444 344445588999999999999999999999887543
No 68
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=45.86 E-value=1.9e+02 Score=24.68 Aligned_cols=101 Identities=21% Similarity=0.219 Sum_probs=59.3
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI---KDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAER 160 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~ 160 (329)
..++..-.-|++.-.+-.++..|.+|+...-.++.-+. .|..+ .+-.. +. .+.+
T Consensus 27 A~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~e--Nl~~a-----------------ie-GE~~--- 83 (166)
T COG1592 27 AKVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRE--NLEEA-----------------IE-GETY--- 83 (166)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHH--HHHHH-----------------Hc-cchH---
Confidence 34555556688888899999999999999877777542 12111 00000 00 0000
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 161 lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|--..|..|+-.. ...| ....+.-++.+.|||.+|......++..+.
T Consensus 84 -------e~~emyp~~ae~A--~~~g-~~~~a~~f~~~~~~Ek~H~~~~~~~Le~~~ 130 (166)
T COG1592 84 -------EITEMYPVFAEVA--EEEG-FKEAARSFRAAAKAEKRHAEMFRGLLERLE 130 (166)
T ss_pred -------HHHHhChHHHHHH--HHcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000111111110 1112 567888899999999999998888877774
No 69
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=42.43 E-value=2e+02 Score=26.35 Aligned_cols=126 Identities=11% Similarity=0.140 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHHHhhcCC-hhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 040427 137 VPCVAKKATWALNWIDGS-ETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~p~l~~k~~~~~~~~~~~-~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|.-.++.+|.. +++. .....+++++ ..++++.--..-..+ ...=--|.........+-.|++|.....+++.
T Consensus 36 i~~~~D~~~~~~--Ls~~e~~~~~~~l~~~~~~D~~v~~~l~~~i---~~~~~~~E~~~~l~~q~~~E~iH~~sYs~il~ 110 (281)
T PF00268_consen 36 IDMSKDIKDWKK--LSEEEREAYKRILAFFAQLDSLVSENLLPNI---MPEITSPEIRAFLTFQAFMEAIHAESYSYILD 110 (281)
T ss_dssp S-GGGHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHh--CCHHHHHHHHHHHHHHHHHHhHHHhhHHHHH---HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555543 3222 2344555554 568887643322222 22222377788888999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHH-----HHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 040427 215 LLRTKLSEERVKALVKEA-----VEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLY 277 (329)
Q Consensus 215 ~l~~~~~~~~v~~~~~ea-----v~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y 277 (329)
.+. +++.+..+++... +....+|+...+... ....+ +.++.-+++.+-+-.-|
T Consensus 111 ~l~--~~~~~~~~~~~~~~~~~~l~~k~~~i~~~~~~~-----~~~~~---~lv~~~~lEgi~f~s~F 168 (281)
T PF00268_consen 111 SLG--NDPKERDEIFDWVEEDPELQKKLDWIEKWYEDN-----DSLAE---KLVASVILEGILFYSGF 168 (281)
T ss_dssp HHS--SSHHHHHHHHHHHHHSHHHHHHHHHHHHHHCSS-----SHHHH---HHHHHHHHHHTTTHHHH
T ss_pred Hhc--CChHHHHHHHHHHHhhhHHhhHHHHHHhhchhh-----hhHHH---HHHHHHHHHHHHHHHHH
Confidence 997 4444444444332 223334555444211 11112 22445567776555443
No 70
>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....
Probab=42.07 E-value=2.2e+02 Score=24.35 Aligned_cols=151 Identities=17% Similarity=0.141 Sum_probs=93.0
Q ss_pred HHHhhcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 040427 85 RFMTEVQVAEAR-AFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIA 163 (329)
Q Consensus 85 ~~~~~~~~~E~~-~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
.+....++++.. .++.........+.+.+..+++.++.+.++ .....-.|..+.-.+++...... .++...+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~----~~~~~~~p~~~~y~~~l~~~a~~-~~~~~~l~a 124 (210)
T PF03070_consen 50 LLASKAPDPEEQRELLSRLIQEIEEELELHEDFAEELGISRED----LENIEPSPATRAYTDFLLSLAQT-GSLAEGLAA 124 (210)
T ss_dssp HHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH----HHHSTC-HHHHHHHHHHHHHHHH-SSHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----HHhhhhhhHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 355566777766 455544455556677778888888765542 44556678887777777766432 246777777
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCC-Ccc--hHHHHHHHHhhhh-hHHHHHHHHHHHHhccCC---HHHHHHHHHHHHHHH
Q 040427 164 FACVEGIFFSGSFCAIFWLKKRGL-MPG--LTFSNELISRDEG-LHCDFACLLYSLLRTKLS---EERVKALVKEAVEIE 236 (329)
Q Consensus 164 ~~~lEgi~f~~~F~~~~~l~~~~~-l~g--~~~~i~~I~rDE~-~H~~~~~~l~~~l~~~~~---~~~v~~~~~eav~~E 236 (329)
+..+|.++...+ -.+..... .++ ...-|+.=.-++- -++.-...++..+....+ .+++.+++..+++.|
T Consensus 125 l~pc~~~Y~~~~----~~~~~~~~~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~E 200 (210)
T PF03070_consen 125 LLPCEWIYAEIG----KRLAEKLRAPEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASDEERERLEEIFRRSCELE 200 (210)
T ss_dssp HHHHHHHHHHHH----HHHHHHCSTTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccccCCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 766666544333 12332222 222 3455555555554 346666667766665544 467889999999999
Q ss_pred HHhhHhhc
Q 040427 237 REFVCDAL 244 (329)
Q Consensus 237 ~~~~~~~~ 244 (329)
..|-+.++
T Consensus 201 ~~Fwd~a~ 208 (210)
T PF03070_consen 201 YDFWDAAY 208 (210)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987653
No 71
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=38.29 E-value=2.2e+02 Score=23.10 Aligned_cols=110 Identities=13% Similarity=-0.093 Sum_probs=69.2
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 88 TEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
....-+.+..++-.|+..|-.|++.....+..++..|.- .. .|.+ ....+....+-...-.
T Consensus 32 ~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~-----~~---~~~~-----------~~~~~~~~~l~~~l~~ 92 (153)
T cd00907 32 EDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNL-----QR---LGKL-----------RIGEDVPEMLENDLAL 92 (153)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----Cc---CCCC-----------CcCCCHHHHHHHHHHH
Confidence 344556788889999999999999999999988766631 11 0100 0000111111111112
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|. .....+--+.-++....=+.++..++.+.+||..|..+...++..+.
T Consensus 93 E~-~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~~~ 141 (153)
T cd00907 93 EY-EAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDLID 141 (153)
T ss_pred HH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22233344444555566789999999999999999999988887765
No 72
>PF11251 DUF3050: Protein of unknown function (DUF3050); InterPro: IPR024423 This family of proteins has no known function.
Probab=37.86 E-value=3.1e+02 Score=24.75 Aligned_cols=159 Identities=22% Similarity=0.217 Sum_probs=83.4
Q ss_pred HHHHHHHHhhhHHHHHhhcC--HHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHhcCChHHHHHHHHHhhhcHH
Q 040427 72 AASDGIVLENLAGRFMTEVQ--VAEARAFYGFQIA-IEN---------IHSEMYSLLLETYIKDSDEKNRLFHAIETVPC 139 (329)
Q Consensus 72 ~~~d~~v~~~l~~~~~~~~~--~~E~~~~~~~q~~-~E~---------iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~ 139 (329)
+.+.++| ..+++.=.+.+| +|+.+.+.+.... +|+ -|-+.|-.-.+.++-|+..++.....+..-..
T Consensus 33 SLlK~LQ-~~LTc~~~PW~P~~~p~~rrlINEIVl~EESD~~~~g~~~SHFElYl~AM~e~GAdt~~I~~fl~~~~~g~~ 111 (232)
T PF11251_consen 33 SLLKALQ-RDLTCTSVPWVPPGDPETRRLINEIVLGEESDEDPDGGYISHFELYLDAMEEVGADTSPIDRFLSLLREGTS 111 (232)
T ss_pred HHHHHHH-HhCcCCCCCCCCCCCchHHHHhhhhhhhhccccCCCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCC
Confidence 4455555 344432233433 4788877775543 332 37788888888888788766666655543222
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHH--HHH-HHHHhHhHHHHHHHHHhcCCCcchHHH-------------------HHH
Q 040427 140 VAKKATWALNWIDGSETFAERLIAF--ACV-EGIFFSGSFCAIFWLKKRGLMPGLTFS-------------------NEL 197 (329)
Q Consensus 140 l~~k~~~~~~~~~~~~~~~~~lv~~--~~l-Egi~f~~~F~~~~~l~~~~~l~g~~~~-------------------i~~ 197 (329)
+.. +.....-++ -++..+.+ .++ +|=- ..-+.-|.++|-.+.|++=.. -+.
T Consensus 112 v~~----Al~~~~~p~-~~~~Fv~~Tf~~i~~~~~--H~iAAaFtfGREdlIP~MF~~il~~~~~~~~~~~~f~yYL~RH 184 (232)
T PF11251_consen 112 VFE----ALQQADVPE-PAKRFVRFTFEIIAEGKP--HEIAAAFTFGREDLIPDMFRSILKDLNIPPGQLPTFRYYLERH 184 (232)
T ss_pred HHH----HHHhcCCCH-HHHHHHHHHHHHHhcCCH--HHHHHHHHhccccchHHHHHHHHHHhcCCccccHHHHHHHHhh
Confidence 111 000111111 11222211 111 1110 011222233444444432111 167
Q ss_pred HHhhhhhHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHH
Q 040427 198 ISRDEGLHCDFACLLYSLLRTKLS--EERVKALVKEAVEIERE 238 (329)
Q Consensus 198 I~rDE~~H~~~~~~l~~~l~~~~~--~~~v~~~~~eav~~E~~ 238 (329)
|--|..-|+-.+..++..|....+ .+++.+...+|++.-++
T Consensus 185 IElDgdeHgPlA~~ml~~Lcg~D~~kw~ea~~aa~~AL~~Ri~ 227 (232)
T PF11251_consen 185 IELDGDEHGPLAMQMLEELCGDDPQKWQEAEQAAKEALEARIA 227 (232)
T ss_pred hhcCCCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999986554 35677778887776554
No 73
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=36.39 E-value=1e+02 Score=24.52 Aligned_cols=39 Identities=21% Similarity=0.061 Sum_probs=31.2
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL 220 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~ 220 (329)
++..-.-|.+.+++..++.+|..|..+...++..+...+
T Consensus 20 la~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~ 58 (125)
T cd01044 20 LAKREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPP 58 (125)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 344444577999999999999999999999888776554
No 74
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=35.85 E-value=2.3e+02 Score=22.76 Aligned_cols=59 Identities=19% Similarity=0.072 Sum_probs=45.3
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC--------------------HHHHHHHHHHHHHHHHHhhH
Q 040427 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS--------------------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~--------------------~~~v~~~~~eav~~E~~~~~ 241 (329)
.+..-++++...++-+..+|..|..-.+.-+..+-..|+ ...+.++++.+++.|...+.
T Consensus 32 ~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~ 110 (148)
T cd01052 32 VKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKCGYLPPDPPDVKGILKVNLKAERCAIK 110 (148)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccccCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 333448999999999999999999999888887754432 12466888888888887664
No 75
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=35.39 E-value=36 Score=24.15 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=26.8
Q ss_pred HHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHH
Q 040427 31 YKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLA 69 (329)
Q Consensus 31 y~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~ 69 (329)
.|+....+|.+.. ...|..+|+++|..++..+-
T Consensus 40 LKn~I~~~W~~~~------~~~~~~~~~~~k~~Ik~~ll 72 (77)
T PF03810_consen 40 LKNLIKKNWSPSK------QKGWSQLPEEEKEQIKSQLL 72 (77)
T ss_dssp HHHHHHHSGGHHH------HHHHHGSSHHHHHHHHHHHH
T ss_pred HHHHHHHcCchhh------ccCCCCCCHHHHHHHHHHHH
Confidence 3556778899876 67789999999999988764
No 76
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=34.86 E-value=2.6e+02 Score=23.04 Aligned_cols=59 Identities=19% Similarity=0.085 Sum_probs=44.0
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhHh
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~~ 242 (329)
..--++|++......+.||..|..-.+.-+..+-.+|. ...+.++++.+++.|...+..
T Consensus 33 ~~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~~~~~e~l~~~l~~E~~~~~~ 100 (157)
T TIGR00754 33 KNWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIGETVREMLEADLALELDVLNR 100 (157)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44469999999999999999999877666555533221 235778899999999887753
No 77
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=32.68 E-value=72 Score=26.55 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=40.5
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHH
Q 040427 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRTKL----SEERVKALVKEAVEIERE 238 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~----~~~~v~~~~~eav~~E~~ 238 (329)
.-|+++|+.|. .|.-|.||+. .....|..+.+.|...- =+|..+-+++.||.+-+-
T Consensus 35 ~klaKkG~~pS---qIG~iLRD~~gi~~vk~vtG~kI~rILk~~Glap~iPeDly~LikKAv~iRkH 98 (148)
T PTZ00072 35 CKLAKKGLTPS---QIGVILRDSMGIPQVKNVTGSKILRILKKNGLAPEIPEDLYFLIKKAVSIRKH 98 (148)
T ss_pred HHHHHCCCCHh---HhhhhhhhccCccceeeccchHHHHHHHhcCCCCCCchHHHHHHHHHHHHHHH
Confidence 35788887676 8899999994 23334667777777542 168899999999986654
No 78
>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.
Probab=31.53 E-value=1.6e+02 Score=27.42 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=33.3
Q ss_pred hhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 80 ENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 80 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
+..-.++..-..+|-+|-.+++-+..|.+|...|..-|+++
T Consensus 154 R~~yerL~~mTdDpgvkd~L~FLl~Re~vH~~~f~~ALe~l 194 (283)
T PF05067_consen 154 RLQYERLYEMTDDPGVKDMLSFLLAREIVHQQQFGKALEEL 194 (283)
T ss_dssp HHHHHHHHTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888899999999999999999999999999988
No 79
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=31.23 E-value=1e+02 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=30.8
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
..+++--+|.++..++.|+.+|..|..-...++..+
T Consensus 28 ~~A~~eG~~~va~lfr~iA~~E~~HA~~~~~~l~~~ 63 (166)
T COG1592 28 KVAEEEGYPEIARLFRAIAEAEAVHAKNHLKLLGKL 63 (166)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 347777899999999999999999999888877653
No 80
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=29.99 E-value=51 Score=24.12 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=19.1
Q ss_pred ccHHHHhcCCHHHHHHHHHHHHHH
Q 040427 48 QDLRHWEALTADEKHFVTHVLAFF 71 (329)
Q Consensus 48 ~D~~~~~~L~~~Er~~~~~~l~~~ 71 (329)
..+-.|..||+.||..+...+-..
T Consensus 30 ~Ei~~W~~msd~Er~aVl~~l~qr 53 (74)
T COG3313 30 DEIFNWSSMSDDERRAVLRLLPQR 53 (74)
T ss_pred HHHHHHhhCCHHHHHHHHHHhHHH
Confidence 456789999999999888776443
No 81
>PF06556 ASFV_p27: IAP-like protein p27 C-terminus; InterPro: IPR010549 This entry represents the C-terminal region of the African swine fever virus (ASFV) IAP-like protein p27. This domain is found in conjunction with IPR001370 from INTERPRO. It has been suggested that the domain may be incoded by the gene involved in aspects of infection in the arthropod host, ticks of the genus Ornithodoros [].
Probab=29.99 E-value=65 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.445 Sum_probs=26.2
Q ss_pred HHHHHHcCCCCCCC---CCCCc--chhhhhc-cccCCCcccccccccccc
Q 040427 265 DRLLGALGYGKLYG---VANPF--DWMELIS-LQGKTNFFEKRVGEYQKA 308 (329)
Q Consensus 265 n~~l~~lG~~~~y~---~~nP~--~w~~~~~-~~~~~nFFe~~~~~Y~~~ 308 (329)
-+||+.+|..+.|- -.|-+ ||-.-+. ..-+-+||-=++.+|..+
T Consensus 34 hKRLedmgfsK~fmrFiLaNafiPpyrkyihKiiLNEryFtFkf~ayLls 83 (131)
T PF06556_consen 34 HKRLEDMGFSKCFMRFILANAFIPPYRKYIHKIILNERYFTFKFNAYLLS 83 (131)
T ss_pred hhhHHHcCCCcceEEEEeecccCCcHHHHHHHHhhccceEEEehhhhhhh
Confidence 37999999999762 24533 3433221 123456777777777543
No 82
>PRK10304 ferritin; Provisional
Probab=28.81 E-value=3.6e+02 Score=22.77 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=40.9
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc--------CC--HHHHHHHHHHHHHHHHHhhH
Q 040427 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK--------LS--EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~~--~~~v~~~~~eav~~E~~~~~ 241 (329)
++...| +||+++-++.=+.+|.-|..-...-+...-.. |+ -..+.++++.+.++|+....
T Consensus 30 ~~~~~g-l~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~~e~~~~~l~~E~~vt~ 99 (165)
T PRK10304 30 WCSYHT-FEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQ 99 (165)
T ss_pred HHhhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 445555 79999999999999999988443333222111 11 13478888889998887654
No 83
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=28.41 E-value=2.2e+02 Score=26.72 Aligned_cols=77 Identities=13% Similarity=0.138 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHhhcCC-hhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 040427 137 VPCVAKKATWALNWIDGS-ETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~p~l~~k~~~~~~~~~~~-~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|.-+++.+|- .+.+. ......++++ ..++++.--.+-..+ ...=--|-........+..|++|....+.++.
T Consensus 39 i~~s~D~~dw~--~Lt~~Er~~~~~~l~~~~~~D~~v~~~~~~~~---~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~ 113 (324)
T PRK09614 39 VPLSNDLKDWK--KLSDEEKNLYTRVFGGLTLLDTLQNNNGMPNL---MPDITTPEEEAVLANIAFMEAVHAKSYSYIFS 113 (324)
T ss_pred ccccchHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455552 23322 2345566665 567887654322222 21112277778889999999999999999998
Q ss_pred HHhc
Q 040427 215 LLRT 218 (329)
Q Consensus 215 ~l~~ 218 (329)
.+..
T Consensus 114 tl~~ 117 (324)
T PRK09614 114 TLCS 117 (324)
T ss_pred HcCC
Confidence 8753
No 84
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=27.27 E-value=4e+02 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.269 Sum_probs=39.3
Q ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc----------CC---HHHHHHHHHHHHHHHHHhhH
Q 040427 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK----------LS---EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 185 ~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~----------~~---~~~v~~~~~eav~~E~~~~~ 241 (329)
..-|||++.-++-=+.+|..|.- .+++.+..+ .| .....++++.+++.|.....
T Consensus 33 ~~~l~G~A~f~~~qa~EE~~H~~---k~~~yl~~~g~~~~l~~I~~P~~~~~s~~e~f~~tlehEq~vt~ 99 (167)
T COG1528 33 SESLPGFAKFLRAQAQEELTHAM---KLFNYLNERGARPELKAIEAPPNKFSSLKELFEKTLEHEQKVTS 99 (167)
T ss_pred hcCChhHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCceecCcCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 55699999999999999999976 555555432 11 13467888888888877554
No 85
>PF13108 DUF3969: Protein of unknown function (DUF3969)
Probab=26.12 E-value=1.5e+02 Score=23.45 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=53.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 040427 196 ELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 196 ~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
+.|.-||+-+.-|+-.++..+.+..-.+++.+++....++|.=- .+-++.+.+.|+.+-++++..+.=.+
T Consensus 25 k~Isid~ae~~iF~p~~~~~l~~~~~~~~L~~II~~G~eLEDI~----------~l~P~~L~~~I~~l~~~~l~~l~~~~ 94 (108)
T PF13108_consen 25 KCISIDEAESLIFRPYIIELLDKMGVSKELIDIIHLGCELEDIA----------SLIPEKLNDSIDELENKCLQVLMELS 94 (108)
T ss_pred CCcCHHHHHHHHcCHHHHHHHHHcCCcHHHHHHHHhccchhhHH----------HhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788999999999999999987777788999999988888641 12245677778777777777665333
No 86
>PF13668 Ferritin_2: Ferritin-like domain
Probab=25.76 E-value=3.4e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=22.5
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLL 117 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il 117 (329)
...+.+++|+.+..++..+..|+.|......++
T Consensus 103 g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll 135 (137)
T PF13668_consen 103 GAAPQIEDPELKALAASIAGVEARHAAWIRNLL 135 (137)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666777777777777777777777655543
No 87
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=24.31 E-value=4.5e+02 Score=22.47 Aligned_cols=46 Identities=17% Similarity=0.069 Sum_probs=34.4
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 167 lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
.|++.||...+-.. .+ +-+.+.+..|++||..|......++..+..
T Consensus 37 ~eA~~fY~~lae~~---~~---~~~rk~~~~la~eE~~H~~~f~~l~~~~~~ 82 (176)
T COG1633 37 LEAIKFYEELAERI---ED---EEIRKLFEDLADEEMRHLRKFEKLLEKLTP 82 (176)
T ss_pred HHHHHHHHHHHHhc---CC---HhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788776544331 11 358889999999999999999988876653
No 88
>PRK15022 ferritin-like protein; Provisional
Probab=23.75 E-value=4.6e+02 Score=22.31 Aligned_cols=58 Identities=9% Similarity=0.181 Sum_probs=40.7
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc-----------CCH--HHHHHHHHHHHHHHHHhhHh
Q 040427 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK-----------LSE--ERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~-----------~~~--~~v~~~~~eav~~E~~~~~~ 242 (329)
|+...+ |||++.-++.=+..|.-|..-. ++.+.++ |+. ..+.++++.++++|+.....
T Consensus 30 ~~~~~~-L~GfA~ff~~qa~EEreHA~k~---~~yl~~rGg~v~l~~I~~P~~~~~s~~e~fe~al~hEk~vt~~ 100 (167)
T PRK15022 30 WCSEQS-LNGTATFLRAQAQSNVTQMMRM---FNFMKSAGATPIVKAIDVPGEKLNSLEELFQKTLEEYEQRSST 100 (167)
T ss_pred HHHhCC-ChhHHHHHHHHHHHHHHHHHHH---HHHHHHcCCceeeCCCCCCccccCCHHHHHHHHHHHHHHHHHH
Confidence 344444 9999999999999999998744 4444322 221 34678888888888876643
No 89
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=23.48 E-value=2.5e+02 Score=20.81 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.3
Q ss_pred cCCHHHHHHHHHHHHHH
Q 040427 55 ALTADEKHFVTHVLAFF 71 (329)
Q Consensus 55 ~L~~~Er~~~~~~l~~~ 71 (329)
.||+.||..+...|.-+
T Consensus 15 lLt~~ER~~i~qaL~~y 31 (80)
T cd07355 15 LLTPPERYGIKKALEDY 31 (80)
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 59999999999888554
No 90
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=23.30 E-value=5.7e+02 Score=23.24 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=41.6
Q ss_pred HHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHH
Q 040427 157 FAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVK 226 (329)
Q Consensus 157 ~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~ 226 (329)
....++++ +.+|++.--..-..+.... --|.........+-+|++|+....+++..+.....++++.
T Consensus 47 ~~~~~la~~~~~d~~v~~~~~~~~~~~~---~~~e~~~~~~~q~~~E~iH~e~Ys~il~~l~~~~e~~~~~ 114 (288)
T cd01049 47 FIKRVLAFLAALDSIVGENLVELFSRHV---QIPEARAFYGFQAFMENIHSESYSYILDTLGKDEERDELF 114 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHH
Confidence 44555554 5678774332211111111 2467777888999999999999999999887543334433
No 91
>COG3687 Predicted metal-dependent hydrolase [General function prediction only]
Probab=22.57 E-value=6.1e+02 Score=23.35 Aligned_cols=124 Identities=14% Similarity=-0.044 Sum_probs=69.3
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
...+.+.+|..+-=..-++-+|++|++.=+.+.+-+..- . +...+.+..|.+.+...+...... +-.+++
T Consensus 61 a~r~r~sdp~L~~dv~gFI~QEamHSraH~~yn~~~~a~-------~--~p~~e~~~~r~erll~~~~~~~~r-~~q~a~ 130 (280)
T COG3687 61 AYRPRLSDPQLRDDVQGFIGQEAMHSRAHAGYNDRLDAQ-------G--TPFAEQIAWRFERLLGESPRGSPR-LEQVAI 130 (280)
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C--CchHHHHHHHHHHHhhhcCCCCcH-HHHHHH
Confidence 355566666555555556678999999988887766210 0 111122333333333333222222 223344
Q ss_pred -HHHHHHHhHhHHHHHHH--HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 165 -ACVEGIFFSGSFCAIFW--LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 165 -~~lEgi~f~~~F~~~~~--l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
+++|..-..-+=.++-. +...|-=|...++-+|=.+.|.-|...+--++..+..
T Consensus 131 ~aAlEHfTA~ma~~il~~~~l~~~~~dP~m~~LwRWHa~EE~EHkaVAyDv~~~v~g 187 (280)
T COG3687 131 IAALEHFTAVMAEWILEHPQLLLVGADPVMLDLWRWHAAEEVEHKAVAYDVFKHVRG 187 (280)
T ss_pred HHHHHHHHHHHHHHHhcCcchhccCCCcHHHHHHHHhhHHHhhhHHHHHHHHHHhcc
Confidence 45776432211111110 1123555778999999999999999998888877763
No 92
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=22.36 E-value=4.4e+02 Score=24.86 Aligned_cols=77 Identities=13% Similarity=0.102 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHHhhcCC-hhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 040427 137 VPCVAKKATWALNWIDGS-ETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214 (329)
Q Consensus 137 ~p~l~~k~~~~~~~~~~~-~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~ 214 (329)
.|--.++.+|-. +.++ ..+..+++++ +.++++..-.+-..++.-. . -|.........+--|++|....+.++.
T Consensus 39 I~ls~D~~dw~~--Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~--~-~~e~~~~l~~~~~~E~iHs~sYs~il~ 113 (322)
T PRK13967 39 IPLSNDLASWQT--LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA--V-TPHEEAVLTNMAFMESVHAKSYSSIFS 113 (322)
T ss_pred cCchhhHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555522 4332 2356666665 4678877644432222111 1 255566778888899999999999999
Q ss_pred HHhc
Q 040427 215 LLRT 218 (329)
Q Consensus 215 ~l~~ 218 (329)
.+..
T Consensus 114 tl~~ 117 (322)
T PRK13967 114 TLCS 117 (322)
T ss_pred HhCC
Confidence 8854
No 93
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=21.86 E-value=4.4e+02 Score=21.40 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=67.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 040427 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVE 168 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lE 168 (329)
.-.-|....++..++..|..|++.....+...+..|. +..+...+. .+ .+....+-...-.|
T Consensus 31 ~~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~-----~~~~~~~~~---------~~----~~~~~~l~~al~~E 92 (156)
T cd01055 31 SKGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVE-----LPAIEAPPS---------EF----ESLLEVFEAALEHE 92 (156)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCee-----CCCCCCCCc---------cc----CCHHHHHHHHHHHH
Confidence 3355778888999999999999999888887754442 111111010 00 01111111112233
Q ss_pred HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 169 gi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
-- ....+.-+...+....=+.++..++++..||.-|......++..+.
T Consensus 93 ~~-~~~~~~~l~~~A~~~~D~~~~~~l~~~l~~q~e~~~~~~~~l~~l~ 140 (156)
T cd01055 93 QK-VTESINNLVDLALEEKDYATFNFLQWFVKEQVEEEALARDILDKLK 140 (156)
T ss_pred HH-HHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2234444555566666699999999999999999988777776665
No 94
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.89 E-value=3.9e+02 Score=22.37 Aligned_cols=68 Identities=16% Similarity=0.070 Sum_probs=40.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHHHHHhhHhhc--CCCCCCCCHHHHHHHH
Q 040427 193 FSNELISRDEGLHCDFACLLYSLLRTKLS----------EERVKALVKEAVEIEREFVCDAL--PCALVGMNGELMSQYI 260 (329)
Q Consensus 193 ~~i~~I~rDE~~H~~~~~~l~~~l~~~~~----------~~~v~~~~~eav~~E~~~~~~~~--~~~~~Gl~~~~~~~yi 260 (329)
.+++.|+.-|+.|......++....-..| ..+..++-.++|+.=..=-.+++ +.-+..++..++..|+
T Consensus 78 ~IF~nIA~SEQ~HmDAVk~LlekYnv~dP~~~~siGvF~NpelqeLYn~Lve~Gs~S~vDALKVGa~IEe~DI~DLE~wl 157 (189)
T COG4902 78 PIFRNIAASEQEHMDAVKSLLEKYNVQDPASTTSIGVFTNPELQELYNQLVEQGSVSRVDALKVGAIIEEKDIRDLEAWL 157 (189)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccCcceeecCHHHHHHHHHHHHccchhhHhHHHhccchhhccHHHHHHHH
Confidence 37899999999999988888766542211 24566777777664322222233 2334444445555554
No 95
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=20.24 E-value=88 Score=22.26 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.1
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 040427 51 RHWEALTADEKHFVTHVL 68 (329)
Q Consensus 51 ~~~~~L~~~Er~~~~~~l 68 (329)
..|++||++||..+....
T Consensus 41 ~~Wk~Ls~~EK~~Y~~~A 58 (73)
T PF09011_consen 41 ERWKSLSEEEKEPYEERA 58 (73)
T ss_dssp HHHHHS-HHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 479999999999887653
No 96
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=20.09 E-value=5.6e+02 Score=24.17 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=40.3
Q ss_pred cCccccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040427 44 VDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEV---QVAEARAFYGFQIAIENIHSEMYSLLLET 119 (329)
Q Consensus 44 id~~~D~~~~~-~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~---~~~E~~~~~~~q~~~E~iH~~sYs~il~~ 119 (329)
.+--+++.+|. +..+..+....+++++ +.++++.--.....+.... .-+-........+-+|++|......+++.
T Consensus 142 ~p~i~~K~~~~~~~~~~~~~~~~~lv~~-~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~ 220 (330)
T PTZ00211 142 IPAIKKKAEWAAKWINSSNSFAERLVAF-AAVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHTDFACLLYSH 220 (330)
T ss_pred CHHHHHHHHHHHHHHhcchHHHHHHHHH-HHhhhHHhhhhHHHHHHHHhcCCCcchHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33334455553 2112223444555444 3467665443322222111 11333344556667999999999999998
Q ss_pred hcC
Q 040427 120 YIK 122 (329)
Q Consensus 120 ~~~ 122 (329)
+..
T Consensus 221 l~~ 223 (330)
T PTZ00211 221 LKN 223 (330)
T ss_pred Hhc
Confidence 864
Done!