Query 040427
Match_columns 329
No_of_seqs 128 out of 1205
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1i_A Ribonucleotide reductas 100.0 8.2E-88 2.8E-92 638.0 27.7 322 4-329 28-349 (349)
2 1h0o_A Ribonucleoside-diphosph 100.0 2.6E-86 9.1E-91 633.6 35.4 323 3-329 67-390 (390)
3 1jk0_B RNR Y4, ribonucleoside- 100.0 1E-87 3.4E-92 636.5 22.3 324 3-329 21-345 (345)
4 1jk0_A RNR Y2, ribonucleoside- 100.0 1E-85 3.5E-90 633.0 28.5 326 3-329 92-419 (419)
5 3olj_A Ribonucleoside-diphosph 100.0 1.2E-80 4.2E-85 574.7 32.8 283 4-286 3-286 (286)
6 1syy_A Ribonucleoside-diphosph 100.0 1E-79 3.4E-84 583.4 32.5 306 3-311 14-344 (346)
7 2o1z_A Ribonucleotide reductas 100.0 7.4E-79 2.5E-83 568.3 31.6 285 3-287 26-310 (311)
8 4a58_A Ribonucleoside-diphosph 100.0 3.4E-79 1.2E-83 573.2 28.7 301 2-308 11-319 (324)
9 2rcc_A Ribonucleoside-diphosph 100.0 2E-78 7E-83 574.7 31.9 306 5-312 18-341 (346)
10 1mxr_A Ribonucleotide reductas 100.0 5.6E-78 1.9E-82 576.8 33.7 310 3-315 11-366 (375)
11 4dr0_A Ribonucleoside-diphosph 100.0 1.6E-75 5.3E-80 553.3 33.2 306 10-325 22-343 (350)
12 3n37_A Ribonucleoside-diphosph 100.0 9.9E-75 3.4E-79 542.9 34.6 295 13-313 5-312 (319)
13 3dhz_A Ribonucleotide reductas 100.0 3.5E-74 1.2E-78 541.0 34.2 294 15-314 17-323 (329)
14 3mjo_A Ribonucleotide reductas 100.0 7.4E-68 2.5E-72 491.2 33.9 265 14-283 15-290 (296)
15 3ee4_A Probable ribonucleoside 100.0 2.6E-61 8.8E-66 451.9 24.4 264 4-279 12-294 (323)
16 2inc_A Toluene, O-xylene monoo 98.4 2.8E-05 9.6E-10 76.0 20.8 221 53-276 81-313 (491)
17 1mty_D Methane monooxygenase h 98.1 0.00021 7.3E-09 69.9 20.3 221 53-276 78-315 (512)
18 3ge3_A Toluene-4-monooxygenase 97.9 0.00031 1E-08 68.5 16.4 221 53-276 82-314 (500)
19 2inc_B Toluene, O-xylene monoo 97.9 0.0028 9.5E-08 58.7 22.1 213 54-272 104-322 (322)
20 3pvt_A Phenylacetic acid degra 97.7 0.02 6.9E-07 52.5 24.0 204 55-276 24-243 (311)
21 2uw1_A Desaturase, plastid del 97.7 0.0042 1.5E-07 57.3 19.4 179 25-221 20-223 (338)
22 1mhy_B Methane monooxygenase h 97.4 0.018 6.3E-07 54.5 19.4 222 52-275 135-380 (395)
23 3u52_C Phenol hydroxylase comp 97.3 0.046 1.6E-06 50.7 21.6 214 53-275 108-328 (333)
24 3ge3_B Toluene-4-monooxygenase 97.3 0.017 5.8E-07 53.5 18.7 163 54-219 108-275 (327)
25 3u52_A Phenol hydroxylase comp 97.3 0.021 7.2E-07 55.9 19.1 212 53-276 86-318 (511)
26 1mty_B Methane monooxygenase h 97.1 0.014 4.8E-07 55.2 15.2 165 52-219 127-300 (384)
27 1za0_A Possible acyl-[acyl-car 97.0 0.028 9.6E-07 50.6 15.4 179 25-224 16-211 (275)
28 3chh_A P-aminobenzoate N-oxyge 96.5 0.35 1.2E-05 44.8 19.8 175 36-223 57-248 (336)
29 3pf7_A Benzoyl-COA oxygenase c 96.4 0.025 8.4E-07 53.7 11.6 153 52-218 97-256 (481)
30 2oc5_A Hypothetical protein; D 96.1 0.55 1.9E-05 39.6 21.0 199 57-275 28-231 (244)
31 1otk_A Protein PAAC, phenylace 92.9 4.6 0.00016 35.5 17.0 191 65-274 6-210 (249)
32 1rcw_A CT610, CADD; iron, DI-i 91.1 6.6 0.00022 33.4 21.9 199 29-244 11-219 (231)
33 1zpy_A Hypothetical protein NE 89.7 5 0.00017 29.8 10.6 68 54-126 11-78 (95)
34 3bjd_A Putative 3-oxoacyl-(acy 88.4 14 0.00047 33.8 14.9 152 85-244 162-323 (332)
35 3b5o_A CADD-like protein of un 84.1 21 0.0007 31.2 16.2 139 93-241 72-223 (244)
36 3dde_A TENA/THI-4 protein, dom 82.2 23 0.00079 30.3 16.3 150 86-242 62-216 (239)
37 1yuz_A Nigerythrin; rubrythrin 81.8 23 0.00077 29.9 14.4 111 89-219 56-166 (202)
38 3k6c_A Uncharacterized protein 76.5 21 0.00071 26.4 10.7 67 54-125 11-77 (95)
39 1za0_A Possible acyl-[acyl-car 73.7 19 0.00066 32.0 9.5 42 84-125 167-209 (275)
40 2a2m_A Hypothetical protein BT 72.5 48 0.0017 28.9 16.2 120 111-244 127-249 (258)
41 4di0_A Rubrerythrin; ssgcid, s 70.1 39 0.0013 26.8 12.7 105 86-215 37-141 (144)
42 3k6c_A Uncharacterized protein 69.0 19 0.00066 26.6 7.0 55 156-216 19-74 (95)
43 2qcx_A Transcriptional activat 67.8 62 0.0021 28.2 22.0 150 86-245 85-241 (263)
44 1zpy_A Hypothetical protein NE 67.2 25 0.00085 26.0 7.3 55 156-216 19-74 (95)
45 1j30_A 144AA long hypothetical 64.7 48 0.0017 25.8 15.5 104 89-217 36-141 (144)
46 3uno_A Probable bacterioferrit 64.5 47 0.0016 27.5 9.6 61 180-241 34-104 (189)
47 2hz8_A De novo designed DIIRON 63.0 17 0.00058 27.9 5.9 49 189-241 61-109 (115)
48 3e6s_A Ferritin; iron storage, 60.1 65 0.0022 26.1 9.6 62 179-241 27-100 (168)
49 4am5_A Bacterioferritin; metal 58.5 66 0.0023 25.4 9.7 58 184-241 33-99 (159)
50 3oql_A TENA homolog; transcrip 58.2 96 0.0033 27.2 13.4 142 93-244 89-245 (262)
51 3oj5_A Ferritin family protein 57.3 73 0.0025 26.0 9.6 58 183-241 37-104 (189)
52 3qhb_A Symerythrin, ORF180; fo 57.2 81 0.0028 26.0 16.2 122 87-217 51-176 (179)
53 3pwf_A Rubrerythrin; non heme 54.6 86 0.0029 25.5 14.4 100 85-218 30-129 (170)
54 1lko_A Rubrerythrin all-iron(I 54.3 92 0.0031 25.7 12.3 110 88-218 35-144 (191)
55 1yuz_A Nigerythrin; rubrythrin 53.6 79 0.0027 26.5 9.3 60 181-240 52-120 (202)
56 3uoi_A Bacterioferritin, BFR; 52.4 44 0.0015 26.2 7.3 58 184-241 35-101 (161)
57 2fzf_A Hypothetical protein; s 48.2 1E+02 0.0036 24.6 15.1 120 84-218 40-163 (175)
58 2uw1_A Desaturase, plastid del 47.3 88 0.003 28.6 9.0 37 85-121 183-219 (338)
59 1nfv_A Bacterioferritin; 24 su 46.9 55 0.0019 26.3 7.1 57 185-241 39-104 (179)
60 2y3q_A Bacterioferritin; metal 46.1 65 0.0022 25.0 7.3 58 184-241 33-99 (158)
61 1nfv_A Bacterioferritin; 24 su 43.8 1.2E+02 0.0042 24.1 16.6 105 93-217 43-147 (179)
62 2gm8_A TENA homolog/THI-4 thia 43.5 1.4E+02 0.0049 24.9 18.9 144 86-244 66-218 (221)
63 3gvy_A Bacterioferritin; iron 42.2 1.2E+02 0.0041 23.6 10.3 59 183-241 32-99 (161)
64 3qb9_A Bacterioferritin, BFR; 41.2 1.3E+02 0.0045 23.8 14.1 105 93-217 40-144 (174)
65 3qb9_A Bacterioferritin, BFR; 41.2 82 0.0028 25.0 7.3 57 185-241 36-101 (174)
66 1vlg_A Ferritin; TM1128, struc 41.1 1.4E+02 0.0047 24.0 9.5 59 182-241 45-113 (176)
67 3hl1_A Ferritin like protein; 40.5 60 0.0021 29.4 6.7 41 177-219 31-71 (317)
68 1j30_A 144AA long hypothetical 39.8 53 0.0018 25.6 5.7 56 183-239 34-95 (144)
69 1s3q_A Ferritin; ferroxidase, 38.6 1.5E+02 0.0052 23.8 9.8 59 182-241 33-101 (173)
70 2fzf_A Hypothetical protein; s 37.7 1.5E+02 0.0051 23.6 8.4 37 84-120 125-161 (175)
71 3uoi_A Bacterioferritin, BFR; 37.5 1.4E+02 0.0049 23.1 13.7 109 89-217 36-144 (161)
72 2y3q_A Bacterioferritin; metal 37.4 1.4E+02 0.0048 23.0 14.1 105 93-217 38-142 (158)
73 4am5_A Bacterioferritin; metal 37.2 1.5E+02 0.0051 23.2 14.6 110 88-217 33-142 (159)
74 1o9i_A Pseudocatalase; oxidore 35.3 51 0.0017 29.1 5.2 37 84-120 156-192 (266)
75 2oh3_A Rubrerythrin, COG1633: 34.5 56 0.0019 26.1 5.1 65 174-238 19-107 (167)
76 1udd_A Transcriptional regulat 33.8 2.1E+02 0.0071 23.9 17.1 139 92-244 65-212 (226)
77 2qzc_A Transcriptional activat 33.6 2E+02 0.0069 23.7 17.7 133 92-244 67-207 (214)
78 1lko_A Rubrerythrin all-iron(I 31.7 72 0.0025 26.4 5.5 57 183-241 34-100 (191)
79 2v8t_A Manganese-containing ps 30.8 65 0.0022 29.0 5.2 70 36-120 130-199 (302)
80 3qhb_A Symerythrin, ORF180; fo 27.9 2.5E+02 0.0086 23.0 8.2 53 68-120 120-175 (179)
81 3bvf_A Ferritin; iron storage, 26.2 2.6E+02 0.0087 22.5 9.6 58 184-241 46-113 (181)
82 1o9i_A Pseudocatalase; oxidore 24.4 3.6E+02 0.012 23.6 11.1 120 90-217 49-193 (266)
83 2xzm_O RPS13E; ribosome, trans 24.1 82 0.0028 25.3 4.1 56 180-238 40-103 (153)
84 2f2g_A SEED maturation protein 23.1 3.2E+02 0.011 22.5 17.3 124 110-244 89-218 (221)
85 3u5c_N S27A, YS15, 40S ribosom 21.2 82 0.0028 25.2 3.5 56 180-238 38-101 (151)
86 1rcd_A L ferritin; iron storag 20.6 3.2E+02 0.011 21.7 9.7 61 181-241 37-109 (173)
87 3a68_A Sferh-4, ferritin-4, ch 20.3 3.8E+02 0.013 22.3 10.3 61 181-241 69-145 (212)
88 4dr0_A Ribonucleoside-diphosph 20.1 3.5E+02 0.012 24.5 8.3 109 156-273 74-189 (350)
No 1
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii}
Probab=100.00 E-value=8.2e-88 Score=637.96 Aligned_cols=322 Identities=63% Similarity=1.130 Sum_probs=253.3
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040427 4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
..+|+||++|+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++++
T Consensus 28 ~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l~ 107 (349)
T 2p1i_A 28 ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLA 107 (349)
T ss_dssp -------------------CCHHHHHHHHHHHTTCCCGGGTCGGGCSHHHHHSCTTTHHHHHHHHHHHTTC-----CCCH
T ss_pred cccCccccCCCcccccCCCcchHHHHHHHHHHHcCCchhhcCccccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIA 163 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
+.+++.++.||+++++++|+++|+||+++||+|+++++.||++++++|+++.++|.|++|++|+.+++++++++++++++
T Consensus 108 ~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lva 187 (349)
T 2p1i_A 108 SKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVA 187 (349)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHTTHHHHSCHHHHHHHHHHHHTSSCSSCHHHHHHH
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999999999999999999877789999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhh
Q 040427 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243 (329)
Q Consensus 164 ~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~ 243 (329)
++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++++||++|++|+.++
T Consensus 188 ~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~~~ 267 (349)
T 2p1i_A 188 NACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICES 267 (349)
T ss_dssp HHHHTTTTTHHHHHHHHHHHTTTCSTTHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCccc
Q 040427 244 LPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVF 323 (329)
Q Consensus 244 ~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~~~ 323 (329)
++++++||+.+++++||+|+||+||.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++...+ +++|
T Consensus 268 l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~k~~~~~~~~----~~~~ 343 (349)
T 2p1i_A 268 LPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRK----EQVF 343 (349)
T ss_dssp SCSTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCCC--------------------------------------
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhcccccCCcccCCccccccccccccCC----CCee
Confidence 899999999999999999999999999999999999999999999888888999999999999998776542 6789
Q ss_pred ccCCCC
Q 040427 324 KIDEDF 329 (329)
Q Consensus 324 ~~~~~f 329 (329)
+|||||
T Consensus 344 ~~~~~f 349 (349)
T 2p1i_A 344 SLNTDF 349 (349)
T ss_dssp ------
T ss_pred ecCCCC
Confidence 999998
No 2
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A
Probab=100.00 E-value=2.6e-86 Score=633.63 Aligned_cols=323 Identities=69% Similarity=1.177 Sum_probs=277.3
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040427 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l 82 (329)
.+++||||.||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 67 ~~~~e~ll~~n~~r~~l~PikY~~~~~ly~k~~~nfW~peEIdls~D~~dw~~Lt~~Er~~~~~vla~fa~~Dsiv~~nl 146 (390)
T 1h0o_A 67 SVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENL 146 (390)
T ss_dssp SCTTCTTTSSCCSCCCSSSCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccCCCcccccCCCCCHHHHHHHHHHHHcCCchhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHHH
Q 040427 83 AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERL 161 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~l 161 (329)
.+.+++.++.||+++|+++|+++|+||+++||+|+++++.|+.+++++|+++.++|.|++|++|+.+++++ +.++++++
T Consensus 147 ~~~~~~~v~~pE~~~~~~~Q~~~EaiHsesYS~il~tl~~d~~e~~~if~~~~~~p~l~~Ka~~i~~~~~~~~~~~~~~l 226 (390)
T 1h0o_A 147 VERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERV 226 (390)
T ss_dssp HHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhccchhHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999975 45799999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhH
Q 040427 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 162 v~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~ 241 (329)
++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|++|+.
T Consensus 227 va~~~lEGi~Fys~F~~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~~~v~el~~eave~E~~~~~ 306 (390)
T 1h0o_A 227 VAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLT 306 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 040427 242 DALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH 321 (329)
Q Consensus 242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~ 321 (329)
++++++++|++.+++++||+|+||++|.+||++|+|++.||+|||+.++..+|+||||+++++|+|++++.... ++
T Consensus 307 ~~~~~~~iGl~~~~~~~YI~y~Anr~L~~LG~~~~y~~~NP~~wm~~~s~~~ktnFFE~r~t~Y~k~~~~~~~~----~~ 382 (390)
T 1h0o_A 307 EALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNST----EN 382 (390)
T ss_dssp TTSCGGGGTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCGGGC----------------------------------
T ss_pred HhccCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCChHHHHhhcccccCccccCCccccccccccccCc----Cc
Confidence 99999999999999999999999999999999999999999999998888888999999999999998776532 67
Q ss_pred ccccCCCC
Q 040427 322 VFKIDEDF 329 (329)
Q Consensus 322 ~~~~~~~f 329 (329)
.|+|||||
T Consensus 383 ~~~~~~~f 390 (390)
T 1h0o_A 383 SFTLDADF 390 (390)
T ss_dssp --------
T ss_pred eeecCCCC
Confidence 89999998
No 3
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Probab=100.00 E-value=1e-87 Score=636.47 Aligned_cols=324 Identities=44% Similarity=0.800 Sum_probs=246.7
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040427 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l 82 (329)
.+++||||.||+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 21 ~~~~e~ll~~n~~r~~~~p~kY~~~~~ly~k~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~nl 100 (345)
T 1jk0_B 21 AEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYL 100 (345)
T ss_dssp HTTTCTTTSCCTTCCSCCSCSCHHHHHHHHHHHHTCCCGGGCCCTTTSTTTTTSCTTHHHHHHHHHHHHC---------C
T ss_pred hhhcCchhcCCCcccccCCCcchHHHHHHHHHHHcCCChhhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHHH
Q 040427 83 AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERL 161 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~l 161 (329)
.+.+++.++.||+++++++|+++|+||+++||+|+++++.|++++ ++|+++.++|.|++|++|+.+++++ +.++++++
T Consensus 101 ~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~~~~e~-~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~~l 179 (345)
T 1jk0_B 101 IENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNI-PLFKEIANLPEVKHKAAFIERWISNDDSLYAERL 179 (345)
T ss_dssp HHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTS-CSGGGGCSCHHHHHHHHHHHHTTSSSSCCHHHHH
T ss_pred HHHHHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHhhCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 999999999999999999999999999999999999998788888 8999999999999999999999974 56699999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhH
Q 040427 162 IAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 162 v~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~ 241 (329)
++++++|||+|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++.+||++|++|++
T Consensus 180 va~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~v~~l~~eave~E~~~~~ 259 (345)
T 1jk0_B 180 VAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYS 259 (345)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCCc
Q 040427 242 DALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNH 321 (329)
Q Consensus 242 ~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~~ 321 (329)
++++++++|++.+++++||+|+||+||.+||++|+|++.||+|||+.++..+++||||+++++|+|++++..... .++
T Consensus 260 ~~l~~~~~Gl~~~~~~~Yi~y~an~~L~~LG~~~~y~~~nP~~wm~~~~~~~k~nFFe~r~~~Y~~~~~~~~~~~--~~~ 337 (345)
T 1jk0_B 260 NSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSAT--PSK 337 (345)
T ss_dssp TSCC-----------CTHHHHHHHHHHHHTTCCCCC--------------------------------------------
T ss_pred HhccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHhcccccCccccCCcchhhcccccccccC--CCc
Confidence 888999999999999999999999999999999999999999999998877889999999999999987765421 267
Q ss_pred ccccCCCC
Q 040427 322 VFKIDEDF 329 (329)
Q Consensus 322 ~~~~~~~f 329 (329)
.|+|||||
T Consensus 338 ~~~~~~~f 345 (345)
T 1jk0_B 338 EINFDDDF 345 (345)
T ss_dssp --------
T ss_pred eeecCCCC
Confidence 89999998
No 4
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=100.00 E-value=1e-85 Score=632.99 Aligned_cols=326 Identities=62% Similarity=1.044 Sum_probs=278.2
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFVTHVLAFFAASDGIVLEN 81 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~-~L~~~Er~~~~~~l~~~~~~d~~v~~~ 81 (329)
.+++|+||.+|+.|++++|++|||+|++|++++++||+|+|||+++|+.+|+ +||+.||++++++|++|+++|++|+++
T Consensus 92 ~~~~e~ll~~n~~r~~l~PikY~~~~~lykk~~anfW~peEIdls~D~~dw~~~Lt~~Er~~~~~vLa~fa~~Dsiv~~n 171 (419)
T 1jk0_A 92 MEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFISRVLAFFAASDGIVNEN 171 (419)
T ss_dssp HGGGCGGGSCCTTCCSCCSCSCHHHHHHHHHHHTTCCCGGGCCCTTHHHHHHHTCCHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred hhhhCccccCCccccccCCcCcHHHHHHHHHHHHcCCchhhcchhccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHH
Q 040427 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAER 160 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~ 160 (329)
+.+.+++.++.||+++|+++|+++|+||+++||+|+++++.||++++++|+++.++|.|++|++|+.+++++ +.+++++
T Consensus 172 l~~~l~~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~e~~~iF~~i~~~p~L~~Ka~~i~~~~~~~~~~~~~~ 251 (419)
T 1jk0_A 172 LVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGER 251 (419)
T ss_dssp HCCCCCTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSCCHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHhccchhHHHH
Confidence 988899999999999999999999999999999999999989999999999999999999999999999975 5569999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhh
Q 040427 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240 (329)
Q Consensus 161 lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~ 240 (329)
+++++++|||+|+|+|+++++|+++|+|||++++|++|+|||++|+.|++.+++.+.+++++++|++++.+||++|++|+
T Consensus 252 lva~~~lEGI~fsg~Fa~~~~l~~rg~MpG~~~~i~lI~RDE~lH~~f~~~l~~~l~~~~~~e~v~el~~eave~E~~~~ 331 (419)
T 1jk0_A 252 LVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYF 331 (419)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhhccccCCCcccccccccccccccccCCCCCCC
Q 040427 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGEYQKASVMSSLNGNGGN 320 (329)
Q Consensus 241 ~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~~~~~~~~~nFFe~~~~~Y~~~~~~~~~~~~~~~ 320 (329)
.++++++++||+.+++++||+|+||++|.+||++|+|++.||+|||+.++..+++||||+++++|+|++++...+ ...+
T Consensus 332 ~~~lp~~liGln~~~~~~YI~Y~Anr~L~~LG~~~~y~~~NP~~wm~~is~~~ktnFFE~r~t~Y~k~~~~~~~~-~~~~ 410 (419)
T 1jk0_A 332 LDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDYQKAGVMSKST-KQEA 410 (419)
T ss_dssp HTTSCGGGGTCCHHHHHHHHHHHHHHHHHTTTCCCSSCCCCCCGGGGC--------------------------------
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCChHHHHHhccccccccCcCCcccccccccccccC-CCCC
Confidence 999999999999999999999999999999999999999999999999888888999999999999998776541 1237
Q ss_pred cccccCCCC
Q 040427 321 HVFKIDEDF 329 (329)
Q Consensus 321 ~~~~~~~~f 329 (329)
+.|+||+||
T Consensus 411 ~~~~~~~~f 419 (419)
T 1jk0_A 411 GAFTFNEDF 419 (419)
T ss_dssp ---------
T ss_pred CccccCCCC
Confidence 789999998
No 5
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A
Probab=100.00 E-value=1.2e-80 Score=574.69 Aligned_cols=283 Identities=69% Similarity=1.188 Sum_probs=276.3
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040427 4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
+++||||.+|+.|++++|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.
T Consensus 3 ~~~e~~l~~~~~r~~~~pikY~~~~~~ykk~~~~fW~peEI~ls~D~~dw~~L~~~Er~~~~~~l~~~~~~D~iv~~~l~ 82 (286)
T 3olj_A 3 VEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLV 82 (286)
T ss_dssp STTCTTTSCCTTTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCTTSHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCccccCCCCCeeeeCCCchHHHHHHHHHHHcCCChHHcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHHHH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~lv 162 (329)
+.+++.++.||+++|+++|+++|+||+++||+|+++++.||++++++|+++.++|.+++|++|+.+++.+ +.+++++++
T Consensus 83 ~~~~~~v~~pE~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~~~~~~~~~~~~~~~~lv 162 (286)
T 3olj_A 83 ERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVV 162 (286)
T ss_dssp HTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHTHHHHCGGGHHHHHHHHHHHHCSSSCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCChhHHHHHHH
Confidence 8999999999999999999999999999999999999989999999999999999999999999999965 456899999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHh
Q 040427 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 163 ~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~ 242 (329)
+++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+++++++++|++++++||++|++|+.+
T Consensus 163 a~~~lEgi~f~~~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eave~E~~~~~~ 242 (286)
T 3olj_A 163 AFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTE 242 (286)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchh
Q 040427 243 ALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWM 286 (329)
Q Consensus 243 ~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~ 286 (329)
+++++++|||.+++++||+|+||+||.+||++|+|+++||+|||
T Consensus 243 ~l~~~~~Gl~~~~~~~yi~y~An~~L~~lG~~~~f~~~nP~~~m 286 (286)
T 3olj_A 243 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286 (286)
T ss_dssp TSCGGGGTCCHHHHHHHHHHHHHHHHHHHTCCCSSCCCCCCTTC
T ss_pred HcCCCcCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Confidence 99899999999999999999999999999999999999999997
No 6
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Probab=100.00 E-value=1e-79 Score=583.35 Aligned_cols=306 Identities=28% Similarity=0.531 Sum_probs=267.6
Q ss_pred CCCCCCCCCC-CCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH
Q 040427 3 SIPEEPLLAP-NPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE--ALTADEKHFVTHVLAFFAASDGIVL 79 (329)
Q Consensus 3 ~~~~e~il~~-~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~--~L~~~Er~~~~~~l~~~~~~d~~v~ 79 (329)
..++|+||+| +++|++++|++|||+|++|+++.++||+|+|||+++|+.||+ +||+.||++++++|++|+++|++|+
T Consensus 14 ~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~~~Lt~~Er~~~~~~l~~~~~~D~iv~ 93 (346)
T 1syy_A 14 NLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFSTAESLVG 93 (346)
T ss_dssp CGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999 778999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred hhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC------
Q 040427 80 ENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG------ 153 (329)
Q Consensus 80 ~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~------ 153 (329)
+++++.+++.++.||+++|+++|+++|+||+++||+|+++++.+++ ++|+++.++|.|++|++|+.+++++
T Consensus 94 ~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~---e~f~~~~~~p~l~~k~~~i~~~y~~~~~~~~ 170 (346)
T 1syy_A 94 NNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEK---EIFNAYNERAAIKAKDDFQMEITGKVLDPNF 170 (346)
T ss_dssp HHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH---HHTTHHHHCHHHHHHHHHHHHTTSGGGSTTC
T ss_pred HhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHhhCHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999988775 5899999999999999999999863
Q ss_pred -------ChhHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC----
Q 040427 154 -------SETFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---- 221 (329)
Q Consensus 154 -------~~~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---- 221 (329)
+++++++++++ +++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.|
T Consensus 171 ~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~~~~ 250 (346)
T 1syy_A 171 RTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT 250 (346)
T ss_dssp CSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhh
Confidence 25789999999 599999999999999999999999999999999999999999999999999887544
Q ss_pred ---HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchh-hhhccccCCCc
Q 040427 222 ---EERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWM-ELISLQGKTNF 297 (329)
Q Consensus 222 ---~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~-~~~~~~~~~nF 297 (329)
+++|++++.+||++|++|++++++.+++|||.+++++||+|+||+||.+||++|+|+++||+||| +..+..+++||
T Consensus 251 ~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL~~lG~~~~y~~~np~pw~~~~~~~~~~~nF 330 (346)
T 1syy_A 251 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMSETIDLNKEKNF 330 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCSCTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCchHHHHHhCcCCCCCC
Confidence 57899999999999999999989888999999999999999999999999999999999999999 55566677899
Q ss_pred cccccccccccccc
Q 040427 298 FEKRVGEYQKASVM 311 (329)
Q Consensus 298 Fe~~~~~Y~~~~~~ 311 (329)
||+++++|+||+.+
T Consensus 331 Fe~~~~~Y~~~~~~ 344 (346)
T 1syy_A 331 FETRVIEYQHAASL 344 (346)
T ss_dssp --------------
T ss_pred CcCCCccccccccC
Confidence 99999999999865
No 7
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Probab=100.00 E-value=7.4e-79 Score=568.32 Aligned_cols=285 Identities=64% Similarity=1.153 Sum_probs=271.1
Q ss_pred CCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040427 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENL 82 (329)
Q Consensus 3 ~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l 82 (329)
.+++||||++|+.|++++|++|||+|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++
T Consensus 26 ~~~~e~ll~~n~~r~~~~p~ky~~~~~ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iv~~~l 105 (311)
T 2o1z_A 26 KEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENL 105 (311)
T ss_dssp TGGGCGGGSCCCSCCSSCSCSCHHHHHHHHHHHHTCCCGGGCCCHHHHHHHHHSCHHHHHHHHHHHHHHHHC-------C
T ss_pred hhhhCchhcCCCcccccCCCCcHHHHHHHHHHHHcCCcHhhcchhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHH
Q 040427 83 AGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLI 162 (329)
Q Consensus 83 ~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv 162 (329)
++.+++.++.||+++|+++|+++|+||+++||+++++++.|+.+++++|+++.++|.+++|++|+.++++++++++++++
T Consensus 106 ~~~l~~~v~~~E~~~~~~~q~~~E~iHs~sYs~il~tl~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~lv 185 (311)
T 2o1z_A 106 ASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIV 185 (311)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHTTSHHHHHHHHHHHHHSSTTSCHHHHHH
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 88899999999999999999999999999999999999889999999999999999999999999999987778999999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHh
Q 040427 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 163 ~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~ 242 (329)
+++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.+++++++++|++++.+||++|++|+++
T Consensus 186 a~~~lEGi~fysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~~~~~~~i~~l~~eave~E~~~~~~ 265 (311)
T 2o1z_A 186 ANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICE 265 (311)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcchhh
Q 040427 243 ALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWME 287 (329)
Q Consensus 243 ~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~nP~~w~~ 287 (329)
+++.+++|++.+.+++||+|+||++|++||++|+|+++||+|||+
T Consensus 266 ~~~~~~~Gl~~~~~~~yi~y~an~~L~~LG~~~~y~~~nP~~wm~ 310 (311)
T 2o1z_A 266 SLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMD 310 (311)
T ss_dssp TBCCTTTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCCCTTTT
T ss_pred HccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchhc
Confidence 999899999999999999999999999999999999999999997
No 8
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase, epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus 4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Probab=100.00 E-value=3.4e-79 Score=573.17 Aligned_cols=301 Identities=28% Similarity=0.454 Sum_probs=251.6
Q ss_pred CCCCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81 (329)
Q Consensus 2 ~~~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~ 81 (329)
|...-+++|++|+.|+. +|++||++|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 11 ~~~~~~~~~~~~~~r~~-~p~~yp~~~~lykk~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~~~~~~D~iv~~n 89 (324)
T 4a58_A 11 ESTSLYKKAGSAMSKLL-YVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKLLNERDLEFYKFLFTFLAMAEKLVNFN 89 (324)
T ss_dssp --------------CCS-CCCCCHHHHHHHHHHHHHCCCGGGCCCHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhccCHHhhc-CCccCHHHHHHHHHHHHcCCChHhcCHhhhHHHHHhCCHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 34456899999999997 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHH
Q 040427 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAER 160 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~ 160 (329)
+. .+++.++.||+++|+++|+++|+||+++||+|+++++ .||++++++|+++.++|.+++|++|+.+++++..+++++
T Consensus 90 l~-~l~~~i~~pE~~~~l~~q~~~E~iHs~sYs~il~tl~~~d~~e~~~~f~~~~~~p~l~~K~~~i~~~~~~~~~~~~~ 168 (324)
T 4a58_A 90 ID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDGDRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPEK 168 (324)
T ss_dssp HH-HHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHTCGGGHHHHHCCCCCHHHCSSHHHH
T ss_pred HH-HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCchhHHHH
Confidence 86 6999999999999999999999999999999999997 478999999999999999999999999999877789999
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHH
Q 040427 161 LIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT---KLSEERVKALVKEAVEIER 237 (329)
Q Consensus 161 lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~---~~~~~~v~~~~~eav~~E~ 237 (329)
+++++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.+.. ++..++|++++++||++|+
T Consensus 169 lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~p~~~~v~~i~~eave~E~ 248 (324)
T 4a58_A 169 ILVFLLIEGIFFISSFYSIALLRVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVET 248 (324)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999874 6778999999999999999
Q ss_pred HhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCC----CCcchhhhhccccCCCcccccccccccc
Q 040427 238 EFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVA----NPFDWMELISLQGKTNFFEKRVGEYQKA 308 (329)
Q Consensus 238 ~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~~----nP~~w~~~~~~~~~~nFFe~~~~~Y~~~ 308 (329)
+|++++++ ++.|||.+++++||+|+||+||.+||++|+|++. ||++|+. ..+++||||+||++|+|+
T Consensus 249 ~~~~~~~~-~~~~ln~~~~~~Yi~y~An~~L~~LG~~~~y~~~~p~~np~~~~~---~~~~~nFFe~r~~~Y~k~ 319 (324)
T 4a58_A 249 AFIEARGE-GVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMT---SIKQTNFFEQESSDYTML 319 (324)
T ss_dssp HHHHHHST-TCTTCCHHHHHHHHHHHHHHHHHHTTCCCSSCCCCC------------------------------
T ss_pred HHHHHHhc-cccCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcchhhc---cCccCCCCCCchhhccch
Confidence 99999997 6789999999999999999999999999999764 6788886 357899999999999975
No 9
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125}
Probab=100.00 E-value=2e-78 Score=574.65 Aligned_cols=306 Identities=22% Similarity=0.374 Sum_probs=267.2
Q ss_pred CCCCCCCCCCCC-ccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040427 5 PEEPLLAPNPDR-FCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 5 ~~e~il~~~~~~-~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
++++||+||+.+ .+++|++|||+|++|++++++||+|+|||+++|+.+|++||+.||++++++|++|+++|++|++++
T Consensus 18 ~~~~i~~~~~~~~~n~~~~~y~~~~~ly~~~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~~v~~~l- 96 (346)
T 2rcc_A 18 ASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYS- 96 (346)
T ss_dssp SCSCSBSCCCCSCCCTTSCSBTTHHHHHHHHHHTCCCGGGSCCHHHHHHGGGSCHHHHHHHHHHHHHHHHTTTTCCCHH-
T ss_pred ccCCCcCCCCCcccccCCCCCHHHHHHHHHHHHcCCChhhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 689999999987 469999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhc------CChhH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWID------GSETF 157 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~------~~~~~ 157 (329)
+.+++.++.||+++|+++|+++|+||+++||+|++++ .+|++++++|+++.++|.|++|++|+.++++ ++.++
T Consensus 97 ~~l~~~~~~~e~~~~~~~q~~~E~iHs~sYs~il~tl-~~~~e~~~~f~~~~~~p~l~~k~~~i~~~~~~~~~~~~~~~~ 175 (346)
T 2rcc_A 97 MRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSL-VPKATQDEIFEYWKHDDVLKERNEFIIDGYEKFVDNPTPKTF 175 (346)
T ss_dssp HHHHTTBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCCChHHH
Confidence 8899999999999999999999999999999999999 5788999999999999999999999999885 24579
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC-------HHHHHHHHH
Q 040427 158 AERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS-------EERVKALVK 230 (329)
Q Consensus 158 ~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~-------~~~v~~~~~ 230 (329)
++++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+.+ .+.|++++.
T Consensus 176 ~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~~~~~~~e~~~~v~~l~~ 255 (346)
T 2rcc_A 176 LESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLM 255 (346)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCChhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987654 358999999
Q ss_pred HHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCCcchhhhhc-c-ccCCCcccccccccc
Q 040427 231 EAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLY--GVANPFDWMELIS-L-QGKTNFFEKRVGEYQ 306 (329)
Q Consensus 231 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y--~~~nP~~w~~~~~-~-~~~~nFFe~~~~~Y~ 306 (329)
+||++|++|++++++.+++|||.+++++||+|+||+||.+||++|+| ++.||+|||+.+. . .+++||||+++++|+
T Consensus 256 eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~L~~lG~~~~f~~~~~nP~~w~~~~~~~~~~~~nFFe~~~~~Y~ 335 (346)
T 2rcc_A 256 KAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSRQYA 335 (346)
T ss_dssp HHHHHHHHHHHHHTTTCSTTCCHHHHHHHHHHHHHHHHHHTTCCCSCTTCCSCSCTTC----------------------
T ss_pred HHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHhccCccccCCCcCCccccc
Confidence 99999999999999888999999999999999999999999999999 5799999997654 4 567999999999999
Q ss_pred cccccc
Q 040427 307 KASVMS 312 (329)
Q Consensus 307 ~~~~~~ 312 (329)
|++.+.
T Consensus 336 ~~~~~~ 341 (346)
T 2rcc_A 336 KVSADN 341 (346)
T ss_dssp ------
T ss_pred cccCcc
Confidence 987654
No 10
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Probab=100.00 E-value=5.6e-78 Score=576.80 Aligned_cols=310 Identities=23% Similarity=0.348 Sum_probs=265.0
Q ss_pred CCCCCCCCCCCCCCc-cccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 040427 3 SIPEEPLLAPNPDRF-CMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81 (329)
Q Consensus 3 ~~~~e~il~~~~~~~-~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~ 81 (329)
..++||||+||+.++ .+.|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|+++
T Consensus 11 ~~~~~~~~~g~~~n~~r~~~~~y~~~~~lykk~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~~l~~~~~~Dsiv~~~ 90 (375)
T 1mxr_A 11 DQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRS 90 (375)
T ss_dssp CTTSSCSBSSSCCCSCCCSCCSCHHHHHHHHHHHHTCCCGGGSCCTTHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCcCCCCCChhhcCCcccHHHHHHHHHHHhcCCCchhcchhhhHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999553 4558999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC--------
Q 040427 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-------- 153 (329)
Q Consensus 82 l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-------- 153 (329)
+.+.+++.++.||+++|++.|+++|+||+++||+|+++++.||+ ++|+++.++|.+++|++|+.+++++
T Consensus 91 ~~~~~~~~v~~pE~~~~l~~~~~~E~iHs~sYs~il~tl~~~~~---e~f~~i~~~p~i~~Ka~~i~~~y~~~~~~~~~~ 167 (375)
T 1mxr_A 91 PNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPS---VVFDDIVTNEQIQKRAEGISSYYDELIEMTSYW 167 (375)
T ss_dssp HHHHTGGGBCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99899999999999999999999999999999999999988876 5999999999999999999998853
Q ss_pred ----------------------ChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHH
Q 040427 154 ----------------------SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACL 211 (329)
Q Consensus 154 ----------------------~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~ 211 (329)
++++++++++++++|||+|||||+++++|+++|+|||++++|++|+|||++|+.|++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~lEgi~FysgF~~~~~l~~~g~m~G~~~~i~lI~RDE~lH~~~~~~ 247 (375)
T 1mxr_A 168 HLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQH 247 (375)
T ss_dssp HHHCSEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 1368899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc-C----------CHHHHHHHHHHHHHHHHHhhHhhcC-CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCC-
Q 040427 212 LYSLLRTK-L----------SEERVKALVKEAVEIEREFVCDALP-CALVGMNGELMSQYIEFVADRLLGALGYGKLYG- 278 (329)
Q Consensus 212 l~~~l~~~-~----------~~~~v~~~~~eav~~E~~~~~~~~~-~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~- 278 (329)
+++.++.+ . ..++|++++.+||++|++|++++++ ++++||+.+.+++||+|+||+||.+||++|+|+
T Consensus 248 l~~~l~~~~e~p~~~~~~~~~~~~i~~l~~eave~E~~~~~~~~~~~~~~Gl~~~~~~~Yi~y~an~rL~~LG~~~~y~~ 327 (375)
T 1mxr_A 248 MLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQT 327 (375)
T ss_dssp HHHHHHHTSSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTTCCBTTBSHHHHHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHhcccCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 99999873 2 2467999999999999999999885 478999999999999999999999999999997
Q ss_pred CCCCcchhhhhcc--ccCCCcccccccccccccccccCC
Q 040427 279 VANPFDWMELISL--QGKTNFFEKRVGEYQKASVMSSLN 315 (329)
Q Consensus 279 ~~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~~~ 315 (329)
+.||+|||+.+.. ..++||||+++++|++|+++.+.+
T Consensus 328 ~~nP~~w~~~~~~~~~~~~nFFE~~~t~Y~~~~~~~~~~ 366 (375)
T 1mxr_A 328 RSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVD 366 (375)
T ss_dssp CCCSCGGGGGTC---------------------------
T ss_pred CCCCHHHHHHHHhhcccccCCCccCcchhhhccccccCc
Confidence 4999999987532 346899999999999997664443
No 11
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-75 Score=553.33 Aligned_cols=306 Identities=23% Similarity=0.312 Sum_probs=256.9
Q ss_pred CCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 040427 10 LAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTE 89 (329)
Q Consensus 10 l~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~ 89 (329)
......+.+++|++|||.+++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++++.+++.
T Consensus 22 ~~~~~~~inwn~i~y~~~~~~ykk~~~nfW~peEI~ls~D~~dw~~Lt~~Er~~~~~vl~f~~~~Dsiv~~~~~~~~~~~ 101 (350)
T 4dr0_A 22 MTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEH 101 (350)
T ss_dssp CCCCCCCSCSSSCSSSSHHHHHHHHHHTCCCGGGSCCGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccccCCCCcccHHHHHHHHHHHHcCCChhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCCh-----hHHHHHHH
Q 040427 90 VQVAEARAFYGFQIAIEN-IHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-----TFAERLIA 163 (329)
Q Consensus 90 ~~~~E~~~~~~~q~~~E~-iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~-----~~~~~lv~ 163 (329)
++.||+++|+++|+++|+ ||+++||+|+++++ +++++.++|+++.++|.|++|++|+.+++++.. ++++++++
T Consensus 102 v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~-~~~e~~~~f~~~~~~p~l~~Ka~~i~~~y~~~~~~~~~~~~~~lva 180 (350)
T 4dr0_A 102 VDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLA-PTETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVA 180 (350)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHS-CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 999999999999999999 99999999999996 677888999999999999999999999996432 58999999
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHH
Q 040427 164 FACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEE-------RVKALVKEAVEIE 236 (329)
Q Consensus 164 ~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~v~~~~~eav~~E 236 (329)
++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.+++.++++++++ ++++++++||++|
T Consensus 181 ~~~lEGi~FysgF~~~~~l~~~g~m~G~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~e~~~e~~~~i~~l~~eave~E 260 (350)
T 4dr0_A 181 SVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDLLNQLYENE 260 (350)
T ss_dssp HHHHHHTTTHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988854 4789999999999
Q ss_pred HHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC--CCCcchhhhhccccC-CCccccccccccccccccc
Q 040427 237 REFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGV--ANPFDWMELISLQGK-TNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 237 ~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~--~nP~~w~~~~~~~~~-~nFFe~~~~~Y~~~~~~~~ 313 (329)
++|++++++ .+||+. ++++||+|+||+||.+||++|+|++ .||+ ||+..+..++ +||||+|+++|+||++..
T Consensus 261 ~~~~~~~~~--~iGl~~-~~~~Yi~y~An~~L~~LG~~~~y~~~~~nP~-~~~~~~~~~k~~nFFE~r~t~Y~k~~~~~- 335 (350)
T 4dr0_A 261 LEYTEDLYD--QVGLSH-DVKKFIRYNANKALMNLGFDPYFEEEDINPI-VLNGLNTKTKSHDFFSMKGNGYKKATVEP- 335 (350)
T ss_dssp HHHHHHHHG--GGTCHH-HHHHHHHHHHHHHHHHTTCCCCSCCCCCCHH-HHHTC-------------------------
T ss_pred HHHHHHHHh--cCCcHH-HHHHHHHHHHHHHHHHcCCCCCCCCCCCCch-HHHhcccccCcCCCCcCchhhhhhccccc-
Confidence 999999874 489986 5999999999999999999999975 6898 7776655544 599999999999997653
Q ss_pred CCCCCCCccccc
Q 040427 314 LNGNGGNHVFKI 325 (329)
Q Consensus 314 ~~~~~~~~~~~~ 325 (329)
+. |+.|.|
T Consensus 336 ~~----d~d~~f 343 (350)
T 4dr0_A 336 LK----DDDFYF 343 (350)
T ss_dssp ------------
T ss_pred CC----ccceec
Confidence 33 667888
No 12
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Probab=100.00 E-value=9.9e-75 Score=542.89 Aligned_cols=295 Identities=20% Similarity=0.270 Sum_probs=253.9
Q ss_pred CCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCH
Q 040427 13 NPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQV 92 (329)
Q Consensus 13 ~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~ 92 (329)
.....+.+|++|||+|++|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.+++
T Consensus 5 ~~~~inwn~i~y~~~~~~y~~~~~~fW~peEi~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~ 84 (319)
T 3n37_A 5 RISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALT 84 (319)
T ss_dssp CCCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSS
T ss_pred ccccccCCCcccHHHHHHHHHHHHcCCCHHhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFF 172 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f 172 (329)
||+++|+++|+++|+||+++||+|+++++.+ .++.++|+|+.++|.+++|++|+.++++++ ++++++++++++||++|
T Consensus 85 pe~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEgi~F 162 (319)
T 3n37_A 85 PHEEAVLSNISFMEAVHARSYSSIFSTLCQT-KDVDAAYAWSEENAPLQRKAQIIQQHYRGD-DPLKKKIASVFLESFLF 162 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHhhCHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864 567889999999999999999999999865 56799999999999999
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHHHHhhHhhcC
Q 040427 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEE-------RVKALVKEAVEIEREFVCDALP 245 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~v~~~~~eav~~E~~~~~~~~~ 245 (329)
||||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++ +|++++++||++|++|+++++
T Consensus 163 ys~F~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~~~~~~~~~e~~~~i~~l~~eave~E~~~~~~~~- 241 (319)
T 3n37_A 163 YSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELY- 241 (319)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999998754 489999999999999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCcchhhhhcc--ccCCCccccccccccccccccc
Q 040427 246 CALVGMNGELMSQYIEFVADRLLGALGYGKLYGV----ANPFDWMELISL--QGKTNFFEKRVGEYQKASVMSS 313 (329)
Q Consensus 246 ~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~ 313 (329)
+.+|++.+ +++||+|+||+||.+||++|+|++ +||++|+ .++. .+++||||+|+++|++|++..-
T Consensus 242 -~~iGl~~~-~~~yi~y~An~~L~~lG~~~~f~~~~~~~nP~~~~-~~~~~~~~~~nFFe~r~~~Y~~~~~~~~ 312 (319)
T 3n37_A 242 -AETPWADD-VKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILA-ALSPNADENHDFFSGSGSSYVMGKAVET 312 (319)
T ss_dssp -TTSSCHHH-HHHHHHHHHHHHHHHTTCCCCSCGGGCCCCHHHHH-HHCC------------------------
T ss_pred -hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHH-hhccCccccCCCCCCChhhhhcCCCccc
Confidence 67899765 999999999999999999999986 5666655 3444 3789999999999999976543
No 13
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A
Probab=100.00 E-value=3.5e-74 Score=540.98 Aligned_cols=294 Identities=21% Similarity=0.303 Sum_probs=252.0
Q ss_pred CCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHH
Q 040427 15 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAE 94 (329)
Q Consensus 15 ~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E 94 (329)
+..+++|++||+.|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.+++||
T Consensus 17 ~~inwn~i~y~~~~~~y~~~~~~fW~peEI~ls~D~~dw~~Lt~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~pE 96 (329)
T 3dhz_A 17 KAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMH 96 (329)
T ss_dssp CCCCTTSCSSHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHTGGGCSSHH
T ss_pred ccccCCCcccHHHHHHHHHHHHcCCCHhhcChhhhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHh
Q 040427 95 ARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSG 174 (329)
Q Consensus 95 ~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~ 174 (329)
+++|+++|+++|+||+++||+|+++++.+ .++.++|+|+.++|.+++|++|+.++++++ ++++++++++++||++|||
T Consensus 97 ~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fys 174 (329)
T 3dhz_A 97 EEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFYS 174 (329)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhhCHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999864 567889999999999999999999999865 5679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHHHHhhHhhcCCC
Q 040427 175 SFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEE-------RVKALVKEAVEIEREFVCDALPCA 247 (329)
Q Consensus 175 ~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~v~~~~~eav~~E~~~~~~~~~~~ 247 (329)
||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++ ++++++++||++|++|+++++ +
T Consensus 175 gF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~~~~~~~~~~~~e~~~~~~~l~~eave~E~~~~~~~~--~ 252 (329)
T 3dhz_A 175 GFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY--D 252 (329)
T ss_dssp HHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999999999999999999999999999999999999999999998754 488999999999999999886 6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCcchhhhhcc--ccCCCcccccccccccccccccC
Q 040427 248 LVGMNGELMSQYIEFVADRLLGALGYGKLYGV----ANPFDWMELISL--QGKTNFFEKRVGEYQKASVMSSL 314 (329)
Q Consensus 248 ~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~~w~~~~~~--~~~~nFFe~~~~~Y~~~~~~~~~ 314 (329)
.+|++.+ +++||+|+||+||.+||++|+|++ +||++|+ .++. .+++||||+|+++|++|++..-.
T Consensus 253 ~iGl~~~-~~~yi~y~An~~L~~lG~~~~y~~~~~~~nP~~~~-~~~~~~~~~~nFFe~r~t~Y~~~~~~~~~ 323 (329)
T 3dhz_A 253 DLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILS-SLSPNADENHDFFSGSGSSYVIGKAEDTT 323 (329)
T ss_dssp TTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHHHHH-HHC--------------------------
T ss_pred ccCchHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCcccHH-HhccCccccCCCCCCChhhhhcCCccccc
Confidence 7899765 999999999999999999999986 5666555 3344 37899999999999999765443
No 14
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A*
Probab=100.00 E-value=7.4e-68 Score=491.23 Aligned_cols=265 Identities=22% Similarity=0.319 Sum_probs=249.5
Q ss_pred CCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHH
Q 040427 14 PDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVA 93 (329)
Q Consensus 14 ~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~ 93 (329)
.++.+.+|++|||.|++|++++++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.+.+++.+++|
T Consensus 15 ~~~inwn~i~y~~~~~~y~k~~~~fW~peEI~ls~D~~dw~~Ls~~Er~~~~~~l~~~~~~D~iq~~~~~~~~~~~~~~p 94 (296)
T 3mjo_A 15 VKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETM 94 (296)
T ss_dssp CCCCCTTSCSCHHHHHHHHHHHHTCCCGGGSCGGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHGGGCSSH
T ss_pred cccccCCCCccHHHHHHHHHHHHcCCCHHHcChhccHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcCCH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhH
Q 040427 94 EARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFS 173 (329)
Q Consensus 94 E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~ 173 (329)
|+++|+++|+++|+||+++||+++++++.+ .++.++|+++.++|.+++|++|+.++++++ ++++++++++++||++||
T Consensus 95 e~~~~~~~q~~~E~iHs~sYs~il~tl~~~-~e~~~~f~~i~~~p~l~~K~~~i~~~~~~~-~~~~~~va~~~lEGi~Fy 172 (296)
T 3mjo_A 95 HEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQINEAFRWSEENENLQRKAKIIMSYYNGD-DPLKKKVASTLLESFLFY 172 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHhcCHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865 467889999999999999999999999865 567999999999999999
Q ss_pred hHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHHHHhhHhhcCC
Q 040427 174 GSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEE-------RVKALVKEAVEIEREFVCDALPC 246 (329)
Q Consensus 174 ~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~-------~v~~~~~eav~~E~~~~~~~~~~ 246 (329)
|||+++++|+++|+|||++++|++|+|||++|+.|++.+++.++.+++++ ++++++++||++|++|+++++
T Consensus 173 sgF~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~~~~~~~~~e~~~~v~~l~~eave~E~~~~~~~~-- 250 (296)
T 3mjo_A 173 SGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEYTEDIY-- 250 (296)
T ss_dssp HHTHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999999999999999999999999999999999998754 488999999999999999886
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCC----CCCc
Q 040427 247 ALVGMNGELMSQYIEFVADRLLGALGYGKLYGV----ANPF 283 (329)
Q Consensus 247 ~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~----~nP~ 283 (329)
+.+|++.+ +++||+|+||+||.+||++|+|++ .||+
T Consensus 251 ~~iGl~~~-~~~yi~y~An~~L~~LG~~~~y~~~~~~~~p~ 290 (296)
T 3mjo_A 251 DDLGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPA 290 (296)
T ss_dssp TTTTCHHH-HHHHHHHHHHHHHHHTTCCCSSCGGGCCCCHH
T ss_pred hccCcHHH-HHHHHHHHHHHHHHHCCCCCCCCCchhhcCHH
Confidence 67899765 999999999999999999999964 4665
No 15
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A*
Probab=100.00 E-value=2.6e-61 Score=451.87 Aligned_cols=264 Identities=18% Similarity=0.279 Sum_probs=239.0
Q ss_pred CCCCCCCCCCCCCccccCCCChHHHHHHHHHHhCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040427 4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLA 83 (329)
Q Consensus 4 ~~~e~il~~~~~~~~~~p~~y~~~~~ly~k~~~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~ 83 (329)
...|++|.+|+.||+++|++ +|+++.++||+|+|||+++|+.||++||+.||++++++|++|+++|++|++++.
T Consensus 12 ~~~~~~l~~~~~~~~~~p~~------ly~k~~~~fW~peEIdls~D~~dw~~Lt~~Er~~~~~vL~~ft~~D~iv~~nl~ 85 (323)
T 3ee4_A 12 RTRSGSLAAGGLNWASLPLK------LFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQ 85 (323)
T ss_dssp CCCCGGGSTTCCCTTSHHHH------HHHHHHHTCCCGGGSCCTTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cccchhccCCCCCcccchHH------HHHHHHHcCCChHhcChhhhHHHHHHCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35689999999999999985 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHH-HHhh----c--C
Q 040427 84 GRFMTEVQV---AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWA-LNWI----D--G 153 (329)
Q Consensus 84 ~~~~~~~~~---~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~-~~~~----~--~ 153 (329)
.+++.++. ||+++|+++|+++|+||+++||+++++++.+++ +|+++.++|.+++|..+. ...+ + +
T Consensus 86 -~~~~~v~~e~~pE~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~----~f~~~~~~p~lr~k~~~~l~~~~~~~~~~~~ 160 (323)
T 3ee4_A 86 -PFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISED----LHRYLDDLPAYRQIFYAELPECLNALSADPS 160 (323)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC----CGGGGTTCHHHHHHHHTHHHHHHHHHHHCCC
T ss_pred -HHHHHhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHHHcCHHHHHHHHHHHHHHHHhhccCCC
Confidence 58888765 999999999999999999999999999987764 899999999998886422 1212 1 2
Q ss_pred ChhHHHHHHHHH-HHHHHHhHhHHHHH-HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC------HHHH
Q 040427 154 SETFAERLIAFA-CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS------EERV 225 (329)
Q Consensus 154 ~~~~~~~lv~~~-~lEgi~f~~~F~~~-~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~------~~~v 225 (329)
+.++++++++|+ ++||++|||||+++ ++|+++|+|||++++|++|.|||++|+.|++.+++.++++.| .++|
T Consensus 161 ~~~~~~~lvaf~~~lEGi~FysgF~~~~~~l~~rg~m~G~~~~i~lI~RDE~~H~~f~~~l~~~l~~e~p~~~~~~~~~v 240 (323)
T 3ee4_A 161 PAAQVRASVTYNHIVEGMLALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRM 240 (323)
T ss_dssp HHHHHHHHHHHCCCCCTTHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhhHHHHHHH
Confidence 345899999995 89999999999755 489999999999999999999999999999999999998876 3789
Q ss_pred HHHHHHHHHHHHHhhHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 040427 226 KALVKEAVEIEREFVCDALPCALV-GMNGELMSQYIEFVADRLLGALGYGKLYGV 279 (329)
Q Consensus 226 ~~~~~eav~~E~~~~~~~~~~~~~-Gl~~~~~~~yi~y~an~~l~~lG~~~~y~~ 279 (329)
++++.+||++ ++|+.+.++.+++ |||.+++++||+|+||+||.+||+++.|++
T Consensus 241 ~el~~eave~-~e~~~~~~~~~~~lGl~~~~~~~Yi~y~AnrrL~~LG~~~~f~~ 294 (323)
T 3ee4_A 241 NELIPLALRL-IEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPV 294 (323)
T ss_dssp HHHHHHHHHH-HHHHHHTTTTCCSTTCCHHHHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHH-HHHHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCH
Confidence 9999999999 9999888877774 999999999999999999999999999975
No 16
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=98.41 E-value=2.8e-05 Score=75.98 Aligned_cols=221 Identities=14% Similarity=0.028 Sum_probs=134.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFH 132 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~ 132 (329)
...+++.-+.+++..++.+..++-......+ .+.+.++++.++.+.++|+.+|.+|+..-.++...+....+.-.. |+
T Consensus 81 ~~~~dprw~~~lk~~~~~~~~~Ey~a~~~~a-~~~r~ap~~~~rnaaa~q~lDElRHaQ~~~~~~~el~~~~~~~~~-f~ 158 (491)
T 2inc_A 81 VDRADPGWVSTMQLHFGAIALEEYAASTAEA-RMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDW-AH 158 (491)
T ss_dssp GGTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGCGGGGH-HH
T ss_pred cccCCHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhccc-cc
Confidence 3457777777777777877777755544443 578899999999999999999999999977777765432211001 22
Q ss_pred --HhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHH
Q 040427 133 --AIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 209 (329)
Q Consensus 133 --~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~ 209 (329)
...++|..+.=-..+.+..-+ .+..+.+++.. +.|+++.--.|..+...+..+-=+.+..++..|+.||++|..+|
T Consensus 159 ~~~~~~~p~~~~~R~~~ed~~~t-~D~~E~~ialnlv~E~~~tnll~~~f~~~Aa~nGD~lt~~v~~siq~DEaRH~~~g 237 (491)
T 2inc_A 159 KAIHTNEWAAIAARSFFDDMMMT-RDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQG 237 (491)
T ss_dssp HGGGSCCHHHHHHHHHHHHHTTS-SCHHHHHHHCCCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhhcCcccHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Confidence 335566654333333333222 23567777765 46986544444334444433222448899999999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhh--------HhhcCCC-CCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 040427 210 CLLYSLLRTKLSEERVKALVKEAVEIEREFV--------CDALPCA-LVGMNGELMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 210 ~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~--------~~~~~~~-~~Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
..+++.+.+....+..++-+......-.+.+ ++..+.. ..--.++.+.++|.--.-++|..+|++.+
T Consensus 238 ~~ll~~ll~d~~~~~~Q~wld~w~wra~~a~~~l~g~~~dy~~p~~~r~~s~~e~~~~Wv~~~~~~~L~~lGL~~P 313 (491)
T 2inc_A 238 GPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKP 313 (491)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTSCGGGCCSCHHHHHHHHTHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHHHHhhhhHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999988765433333443333332222222 1222210 11111445555555445567999999865
No 17
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=98.14 E-value=0.00021 Score=69.94 Aligned_cols=221 Identities=13% Similarity=-0.017 Sum_probs=132.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI---KDSDEKNR 129 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e~~~ 129 (329)
...+++.-+.+++..++.++.++-.-.... ..+.+..+.+.++...++|+.+|.+|+..-.++...+. .||.--..
T Consensus 78 ~~~~dprW~~~Lk~~l~av~~~EY~a~~~~-a~~~r~ap~~~~rnaaa~qalDElRHaQ~~~~l~k~~~~~~~dp~Gfd~ 156 (512)
T 1mty_D 78 GVRVHPKWNETMKVVSNFLEVGEYNAIAAT-GMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHND 156 (512)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCTTTTT
T ss_pred cccCCHHHHHHHHHHHcccCHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccCCCH
Confidence 456999999999999999988886655544 35788999999999999999999999998444434332 23211000
Q ss_pred HHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHH
Q 040427 130 LFHAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCD 207 (329)
Q Consensus 130 ~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~ 207 (329)
.-.++.++|..+-=-+.+.....+ .+..+.+++.. +.|.++.--.|..+...+ ..|=+. +..++.-|..||++|..
T Consensus 157 ~r~~~~~~p~~q~~R~~fe~~~~t-~D~~E~~valn~v~E~~~tnll~~~~~~~Aa~nGD~~-tptv~~siqsDEaRH~~ 234 (512)
T 1mty_D 157 ARRTRTIGPLWKGMKRVFSDGFIS-GDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEI-TPTVFLSIETDELRHMA 234 (512)
T ss_dssp HHHHGGGSSHHHHHHHHHTHHHHS-SCHHHHHHHHTTTHHHHTHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCchhhhHHHHHHHhhc-CChHHHhhhhhhhHHHHhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHH
Confidence 122455566654322222222112 23567777765 468875544444444443 344433 88899999999999999
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhhH-------hhcCCCCCCCCHHHHHHHHHHH----HHHHHHHcCCCC
Q 040427 208 FACLLYSLLRTKL-SEERVKALVKEAVEIEREFVC-------DALPCALVGMNGELMSQYIEFV----ADRLLGALGYGK 275 (329)
Q Consensus 208 ~~~~l~~~l~~~~-~~~~v~~~~~eav~~E~~~~~-------~~~~~~~~Gl~~~~~~~yi~y~----an~~l~~lG~~~ 275 (329)
.|..+++.+.+.+ +...+.+-++.....-.+.+. +.......--.++.+.+||.=- .-.+|..+|++.
T Consensus 235 ~g~~ll~~Lled~~Nr~~lQ~wldkw~wra~~af~~l~g~~~dy~~~~R~~s~~e~~~rWv~ed~~~~~~~~L~~lGL~~ 314 (512)
T 1mty_D 235 NGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVES 314 (512)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCSSCHHHHHHHHHTTTTTTHHHHTTGGGTCCC
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHhhhhhHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999998642 233344443333222222111 1121111111144555554431 334489999976
Q ss_pred C
Q 040427 276 L 276 (329)
Q Consensus 276 ~ 276 (329)
+
T Consensus 315 P 315 (512)
T 1mty_D 315 P 315 (512)
T ss_dssp C
T ss_pred C
Confidence 5
No 18
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=97.91 E-value=0.00031 Score=68.51 Aligned_cols=221 Identities=16% Similarity=0.074 Sum_probs=131.4
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFH 132 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~ 132 (329)
..++++.-..+++..++.+..++-..... ...+.+.+++++++..+.+|+.+|.+|+..=.+....+..++..=+....
T Consensus 82 ~~~ldp~W~~~Lk~~~~av~~~Ey~a~~g-~A~~~R~aps~~~rn~~~fQ~~DElRHaQ~q~y~~~~l~~~~~gFd~~~r 160 (500)
T 3ge3_A 82 YENSDPGWISTLKSHYGAIAVGEYAAVTG-EGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWR 160 (500)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGGHHHH
T ss_pred cccCCHHHHHHHHHHhcccchHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccChHHH
Confidence 45688888889999999998888655433 34688899999999999999999999999877777767543321000112
Q ss_pred HhhhcHHHH--HHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHH
Q 040427 133 AIETVPCVA--KKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFA 209 (329)
Q Consensus 133 ~~~~~p~l~--~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~ 209 (329)
++. +|.-+ -=-+++.+.+-+ .+.++.+++.. +.|.++=-..|..+...+..+==..+..++.-+..||++|...|
T Consensus 161 ~~~-d~~W~~~~~R~~fE~~~~t-~Dw~E~~valnlvfEp~~tnll~v~l~~~Aa~NGD~~tptl~~S~qsDe~Rh~~~g 238 (500)
T 3ge3_A 161 AYH-SNEWAAIAAKHFFDDIITG-RDAISVAIMLTFSFETGFANMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQG 238 (500)
T ss_dssp GGG-SCCHHHHHHHHHHHHHTTS-SCHHHHHHHTCCCCCCCCHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHh-CchhhhhHHHHHHHHHHcc-CCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHHHHHhHHHHHHHH
Confidence 222 22211 111122222212 23567777764 45654322222223333332222456778899999999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHhh--------HhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHcCCCCC
Q 040427 210 CLLYSLLRTKLSEERVKALVKEAVEIEREFV--------CDALPCALVGMN-GELMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 210 ~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~--------~~~~~~~~~Gl~-~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
..+++.+.+...++.+.+.++...-.=.+.+ ++..+.+.--.+ ++-+.++|.---=++|..+|++++
T Consensus 239 ~alv~~lle~~~~~n~q~wld~wfwra~~a~~al~G~~~dY~~p~~~r~~S~~e~~~ewi~~~~~~~L~~~Gl~~P 314 (500)
T 3ge3_A 239 GPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKP 314 (500)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSCHHHHHHHHTTTTHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999998876556667666655544333322 221221111223 233333322222347999999886
No 19
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B*
Probab=97.91 E-value=0.0028 Score=58.71 Aligned_cols=213 Identities=11% Similarity=-0.044 Sum_probs=129.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCChHHHHHH
Q 040427 54 EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSE---MYSLLLETYIKDSDEKNRL 130 (329)
Q Consensus 54 ~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~---sYs~il~~~~~d~~e~~~~ 130 (329)
..+++.-++.++..++-+-..+-...-+. ..+.+..+.+.++....+|+++|.+|+. -|++-+.....+...-...
T Consensus 104 ~~ld~~w~~~l~~~l~p~~~~e~~~~~~~-a~~~r~~~~~~i~n~~~~qa~DelR~aQ~~~y~~~~L~~~~~~~g~~~~~ 182 (322)
T 2inc_B 104 QMLTREWVETLARFYTPARYLFHALQMGS-VYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRE 182 (322)
T ss_dssp GGSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchHH
Confidence 35777777777777665555553332232 3567788999999999999999999999 7777766554432100011
Q ss_pred HHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHH
Q 040427 131 FHAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDF 208 (329)
Q Consensus 131 ~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~ 208 (329)
=..+.++|..+-=-+++.+.+-. .+..+.+++.. ++|+++----|.-+-..+ .+|= ..+..++..+.-||++|...
T Consensus 183 k~~w~~~p~wq~~R~~~E~~~~~-~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD-~~t~~l~~s~q~D~~Rh~~~ 260 (322)
T 2inc_B 183 RDVWENDPAWQGFRELIEKALIA-WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGD-TLLGLLAQAQKRDAERHRRW 260 (322)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHTTHHHHHHHHHTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHhhcc-CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHCCC-hhHHHHHHHHHHHHHHHHHH
Confidence 23567788766544444444333 24678888876 569986544444433322 3332 45777889999999999999
Q ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcC
Q 040427 209 ACLLYSLLRTKLS-EERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALG 272 (329)
Q Consensus 209 ~~~l~~~l~~~~~-~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG 272 (329)
+..+++.+.+++. .+.+..-+......-.+.+....+ -..+ .. ....-++-....++..||
T Consensus 261 ~~alvk~~~~~~~N~~~lq~wi~~w~~ra~~A~~~l~~-~~~~-~~-~~~~~~~~~~~~~~~~~g 322 (322)
T 2inc_B 261 SSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCS-ALPD-GE-NAIVEAKSASRYVRQMMG 322 (322)
T ss_dssp HHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-HSTT-HH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHHHH-HhcC-CC-cHHHHHHHHHHHHHHhcc
Confidence 9999999987633 344444444443333333321111 1111 11 234666667777777776
No 20
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C
Probab=97.70 E-value=0.02 Score=52.51 Aligned_cols=204 Identities=11% Similarity=0.011 Sum_probs=137.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 040427 55 ALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAI 134 (329)
Q Consensus 55 ~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~ 134 (329)
.||+.-|..+.+.++.++-.+-+.+.-+. ..+...|+-|.+..++..+..|.-|...+..++..++.|+++ +....
T Consensus 24 ~mP~~Yr~~L~~ll~~laD~ELi~~~rl~-ew~~~AP~Lee~iALa~ia~DE~GHa~~l~~~a~~lG~d~d~---l~~~~ 99 (311)
T 3pvt_A 24 WMPDAYRKTLIRQIGQHAHSEIVGMLPEG-NWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCARED---IYQKM 99 (311)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTHHHHH-TTGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHH---HHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH---HHHHH
Confidence 38999999999999988887765555443 466788999999999999999999999988899999766543 22111
Q ss_pred hhcHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040427 135 ETVPCVAKKATWALNWID-GSETFAERLIAFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLL 212 (329)
Q Consensus 135 ~~~p~l~~k~~~~~~~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~~~l 212 (329)
.... .|. ....+ ...+++..++-..+..| ++..++.. .+...+-++.+...|+++|+-|..++...
T Consensus 100 r~~~---~~~---~~lfe~P~~dWad~vvr~~l~D~------~a~~~~~~L~~ss~~plA~~a~ki~kEE~yH~~~g~~w 167 (311)
T 3pvt_A 100 LDGR---MKY---SSIFNYPTLSWADIGVIGWLVDG------AAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEA 167 (311)
T ss_dssp HTTS---SCC---CGGGGSCCCSHHHHHHHHHHHHH------HHHHHHHTTTTCSBHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcch---hhh---hhHHhCCCCCHHHHHHHHHHHHH------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 000 01111 23457766554434444 44443322 34457789999999999999999999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHhhHhhcC--------------CCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Q 040427 213 YSLLRTKLSEERVKALVKEAVEIEREFVCDALP--------------CALVGMNGELMSQYIEFVADRLLGALGYGKL 276 (329)
Q Consensus 213 ~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~~--------------~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~~ 276 (329)
++.|... .++.++.++++++.=--++...|+ ..+-+.+.+++.+--.-.....|..+|+.-+
T Consensus 168 v~rL~~g--t~esr~r~Q~Al~~~wp~~~elFg~~~~~s~~~~~~~~~Gi~~~~n~eLR~~w~~~v~~~l~~~gL~~P 243 (311)
T 3pvt_A 168 CMALAQG--SEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVP 243 (311)
T ss_dssp HHHHHTS--CHHHHHHHHHHHHHHHHHHHHTTCSCGGGCTTHHHHHHTTSCSSCHHHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHhC--CHHHHHHHHHHHHHHHHHHHHHcCCCccccchHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9988853 245567777777754444544452 1233356777866445567788999999764
No 21
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=97.70 E-value=0.0042 Score=57.35 Aligned_cols=179 Identities=12% Similarity=-0.053 Sum_probs=108.6
Q ss_pred hHHHHHHHHHH---hCCCCCCc-cCccc------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhc
Q 040427 25 PQIWEMYKKAE---ASFWTAEE-VDLSQ------DLRHW----EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEV 90 (329)
Q Consensus 25 ~~~~~ly~k~~---~~fW~p~e-id~~~------D~~~~----~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~ 90 (329)
||+.+...... ...|.|.+ ||.++ ++.+| ++||+.-.-++...+--=-.+.+.+ ..+...+
T Consensus 20 ~~~~~~~~~hL~p~~~~Wqp~D~lPw~~~~~F~~~~~~~~~~~~~l~d~~~v~lv~~~iTEd~LPtY~-----~~L~~~f 94 (338)
T 2uw1_A 20 DWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYM-----SMLNRCD 94 (338)
T ss_dssp HHHHHHTGGGSCCGGGCCCGGGGSCCTTSTTHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTHHHHH-----HHHTTST
T ss_pred HHHHHHHHHHhhhHhhcCCchhcCCCccccchhhhcccccHhhccCCHHHHHHHHHHHHhhhcchHHH-----HHHHHHc
Confidence 44555444433 36899988 77555 56677 4788776665544432112222222 1122222
Q ss_pred --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCC--hhHHH
Q 040427 91 --------QVAEARAFYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDGS--ETFAE 159 (329)
Q Consensus 91 --------~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~--~~~~~ 159 (329)
..+....|.....++|+.|+.+-..++-.-+ .||...++. +...+..-++.+ .+..+
T Consensus 95 gvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgrvDp~~lE~~------------~~~~i~~Gfd~~~~~~p~~ 162 (338)
T 2uw1_A 95 GIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKT------------IQYLIGSGMDIKSENSPYL 162 (338)
T ss_dssp TTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHH------------HHHHHHHCCCCCCTTCHHH
T ss_pred CcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHH------------HHHHHhCCCCCCCCCCHHH
Confidence 1466888999999999999999888887543 266421110 112223333321 12345
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC
Q 040427 160 RLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS 221 (329)
Q Consensus 160 ~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~ 221 (329)
.++.-.+.|..-+ .++.-+-.+++..-=|.++++...|++||.+|..+...+++.+....+
T Consensus 163 ~~vy~sfQE~AT~-vsh~n~~r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~le~dp 223 (338)
T 2uw1_A 163 GFIYTSFQERATF-ISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDP 223 (338)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 5443346677643 344445445444446889999999999999999999999988875544
No 22
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B
Probab=97.35 E-value=0.018 Score=54.54 Aligned_cols=222 Identities=8% Similarity=-0.084 Sum_probs=132.7
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH-
Q 040427 52 HWEALTADEK-HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI---KDSDE- 126 (329)
Q Consensus 52 ~~~~L~~~Er-~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~---~d~~e- 126 (329)
.+..|++.-+ +.++..++.+..++-....+.+ .+.+..+.+.++....+|+++|.+|+..-+++...+. .++.+
T Consensus 135 ~~~~ld~~w~~~~l~~~l~p~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~g~~~~ 213 (395)
T 1mhy_B 135 SIRTIDPYWRDEILNKYFGALLYSEYGLFNAHS-SVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDAS 213 (395)
T ss_dssp GGGGSCHHHHHTTHHHHHHHHHHHHHHHHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 3457999999 9999999999988866555544 5788899999999999999999999999888866552 22210
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHh-hcCChhHHHHHHHHH-HHHHHHhHhHHHHH-HHHHhcCCCcchHHHHHHHHhhhh
Q 040427 127 KNRLFHAIETVPCVAKKATWALNW-IDGSETFAERLIAFA-CVEGIFFSGSFCAI-FWLKKRGLMPGLTFSNELISRDEG 203 (329)
Q Consensus 127 ~~~~~~~~~~~p~l~~k~~~~~~~-~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~-~~l~~~~~l~g~~~~i~~I~rDE~ 203 (329)
.+..=..|.++|.-+-=-+++.+. +.. .+..+.+++.. ++|+++.---|.-+ ..++..+==.-+..++.-+.-||+
T Consensus 214 ~~~~k~~W~~dp~Wq~~R~~~E~~~l~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~~Aa~nGD~~tptl~~s~q~D~~ 292 (395)
T 1mhy_B 214 TDVPKKIWTTDPIYSGARATVQEIWQGV-QDWNEILWAGHAVYDATFGQFARREFFQRLATVYGDTLTPFFTAQSQTYFQ 292 (395)
T ss_dssp SHHHHHHHHHCGGGHHHHHHHHHHHHSC-CCHHHHHHHHHHTHHHHHHHHHHTTTHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCcchHHHHHHHHhhhhhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 001112344555433222223333 322 23678888876 46998655445444 344433211234445555899999
Q ss_pred hHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHHHHHhhH---hhcCC--CCCCCC-----HHHHHHHHHHHHHHH
Q 040427 204 LHCDFACLLYSLLRTKL------SEERVKALVKEAVEIEREFVC---DALPC--ALVGMN-----GELMSQYIEFVADRL 267 (329)
Q Consensus 204 ~H~~~~~~l~~~l~~~~------~~~~v~~~~~eav~~E~~~~~---~~~~~--~~~Gl~-----~~~~~~yi~y~an~~ 267 (329)
+|...+..+++.+.+.. +...+..-+......-.+-+. -++.. .+-|.+ .+.+.+...--...+
T Consensus 293 Rh~~~~~alvk~lle~d~~~~~~N~~llq~Wid~W~~ra~~Al~~l~p~~~~~~~~~~~~k~~~~~~a~~~v~~~~~~~~ 372 (395)
T 1mhy_B 293 TTRGAIDDLFVYCLANDSEFGAHNRTFLNAWTEHYLASSVAALKDFVGLYAKVEKVAGATDSAGVSEALQRVFGDWKIDY 372 (395)
T ss_dssp HHHHHHHHHHCCCCCTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGSCCCTTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999998887332 223344444443333333332 11211 112332 223444222114489
Q ss_pred HHHcCCCC
Q 040427 268 LGALGYGK 275 (329)
Q Consensus 268 l~~lG~~~ 275 (329)
|..+|+..
T Consensus 373 L~~~GL~~ 380 (395)
T 1mhy_B 373 ADKIGFRV 380 (395)
T ss_dssp HHHHTCCC
T ss_pred HHHcCCCC
Confidence 99999985
No 23
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C
Probab=97.35 E-value=0.046 Score=50.69 Aligned_cols=214 Identities=6% Similarity=-0.077 Sum_probs=128.8
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH-HHHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE-KNRLF 131 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e-~~~~~ 131 (329)
+..+++.-+..++..++-+...+-....+. ..+.+..+.+.++.+..+|+++|.+|+..-+++.-.+...+.. ...--
T Consensus 108 ~~~ld~~w~~~l~~~~~plr~~E~ga~~~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~ls~~~l~l~~~~g~~~~~~k 186 (333)
T 3u52_C 108 LTRLSEETQKQLLRLLVPLRHVELGANMNN-AKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESK 186 (333)
T ss_dssp TTTSCHHHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHH
T ss_pred cccCCHHHHHHHHHHcchHhHHHHHHHHHH-HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhHHH
Confidence 356888888888888887777775443333 3578889999999999999999999999777766666332211 11112
Q ss_pred HHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHH-HHhcC-CCcchHHHHHHHHhh-hhhHHH
Q 040427 132 HAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFW-LKKRG-LMPGLTFSNELISRD-EGLHCD 207 (329)
Q Consensus 132 ~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~-l~~~~-~l~g~~~~i~~I~rD-E~~H~~ 207 (329)
..|.++|.-+-=-+++.+.+.. .++.+.+++.. ++|+++---.|.-+.. .+.+| -+. + ++.-++.| |++|..
T Consensus 187 ~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~ll~~L~~~~~~~~aa~~gd~~~--~-~~~s~q~d~~~Rh~~ 262 (333)
T 3u52_C 187 AYWMDDEMWQPMRKLVEDTLVV-DDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDV--S-MLTEFMRDWYKESLR 262 (333)
T ss_dssp HHHHHCTTTHHHHHHHHHHTTC-CCHHHHHHHHHTHHHHHHHHHHHTHHHHHHHTTTCGGG--G-GTSHHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcee--h-hhHHHhhhHHHHHHH
Confidence 2456777554322333333322 23678888876 6899865444444443 23333 222 2 44455556 999999
Q ss_pred HHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Q 040427 208 FACLLYSLLRTKLS--EERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 208 ~~~~l~~~l~~~~~--~~~v~~~~~eav~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~~~ 275 (329)
.+..+++.+.++-+ ...+..-+..-...-.+-+..+. ... +..+. .+-++-....+|..+|+.+
T Consensus 263 ~~~alvk~ll~~~~~N~~~lq~Wi~~W~~ra~~al~pl~-~~~--~~~~~-~~~~~~~~~~~~~~~gl~~ 328 (333)
T 3u52_C 263 WTNAMMKAVAGESETNRELLQKWIDHWEPQAYEALKPLA-EAS--VGIDG-LNEARAELSARLKKFELQS 328 (333)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTT--TCHHH-HHHHHHHHHHHHGGGTCCC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--cCchH-HHHHHHHHHHHHHHCCCCc
Confidence 99999998886522 22233333332222111111111 111 22222 5557777888999999986
No 24
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B
Probab=97.34 E-value=0.017 Score=53.45 Aligned_cols=163 Identities=9% Similarity=-0.040 Sum_probs=105.6
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCChHHHHHH
Q 040427 54 EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEM---YSLLLETYIKDSDEKNRL 130 (329)
Q Consensus 54 ~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~s---Ys~il~~~~~d~~e~~~~ 130 (329)
..+++.-++.++..++-+..++-...-+. ..+....+.+.++.+..+|+++|-+|+.. +++-+..-..+-...+.-
T Consensus 108 ~~ld~~w~~~l~~~l~pl~~~e~~a~m~~-a~~~r~~~~~~i~na~~fqa~DelRhaQ~~q~~~~~l~~~~~~~~~~~~~ 186 (327)
T 3ge3_B 108 QMVREGWEHTMARCYSPLRYLFHCLQMSS-AYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHE 186 (327)
T ss_dssp GGSCTTHHHHHHHHTTTHHHHHHHHHHHH-HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCTTTSH
T ss_pred ccCCHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCchhHH
Confidence 46777777777777777776664433332 35778889999999999999999999554 666554433221100011
Q ss_pred HHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHH
Q 040427 131 FHAIETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDF 208 (329)
Q Consensus 131 ~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~ 208 (329)
-..|.++|.-+-=-+++.+.+.. .+..+.+++.. ++|+++---.|.-+-..+ .+| =..+..++..+..||++|...
T Consensus 187 k~~W~~dp~Wq~~R~~~Ed~~~~-~Dw~E~~vA~nlv~E~l~~~L~~~~~~~~Aa~nG-D~~t~~l~~s~qsD~~Rh~~~ 264 (327)
T 3ge3_B 187 RELWEKEPGWQGLRELMEKQLTA-FDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENN-DTLLPLLIDSQLKDAERHSRW 264 (327)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTC-CSHHHHHHHHHHTHHHHHHHHTHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCcchHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHHHH
Confidence 22455677665422333333322 24678888875 589875433333333333 333 245777889999999999999
Q ss_pred HHHHHHHHhcc
Q 040427 209 ACLLYSLLRTK 219 (329)
Q Consensus 209 ~~~l~~~l~~~ 219 (329)
+..+++.+.++
T Consensus 265 ~~alvk~ll~~ 275 (327)
T 3ge3_B 265 SKALVKHALEN 275 (327)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcC
Confidence 99999999877
No 25
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=97.25 E-value=0.021 Score=55.91 Aligned_cols=212 Identities=13% Similarity=0.007 Sum_probs=127.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----hHHH
Q 040427 53 WEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD-----SDEK 127 (329)
Q Consensus 53 ~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d-----~~e~ 127 (329)
...+++.-++.++..++.+..++-.-..+. ..+.+.+..+..+....+|+++|.+|+.--+++...+... ...+
T Consensus 86 ~~~~d~~W~~~Lk~~l~al~~~EYgA~~~~-a~~~r~~~g~~~~na~~fqa~DeLRhAQ~~~~~~~~l~~~~~Gf~d~a~ 164 (511)
T 3u52_A 86 QNISDARYVNALKLFISGISPLEHAAFQGY-SKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPH 164 (511)
T ss_dssp GGSSCGGGHHHHHHHHHHTHHHHHHHHHHH-HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHH
T ss_pred cccCCHHHHHHHHHHhccccHHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccChhhh
Confidence 345677788888888888888875554444 3577888999999999999999999999888776655321 1111
Q ss_pred HHHHHHhhhcHHH---HHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhh
Q 040427 128 NRLFHAIETVPCV---AKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG 203 (329)
Q Consensus 128 ~~~~~~~~~~p~l---~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~ 203 (329)
. .+|.- ..| .++.+.+.. +..+.+|+.. ++|+++----|..+..++..+==..+..++.-+..||+
T Consensus 165 --~-----~d~~W~~~~~R-~~vEd~~t~--Dw~E~~vA~nlv~E~l~tnLl~~~~~~~Aa~nGD~~t~t~~~s~qsDes 234 (511)
T 3u52_A 165 --M-----HDRVWYLSVPK-SFFDDARSA--GPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEA 234 (511)
T ss_dssp --H-----HTTCGGGHHHH-HHHHHHHHS--CHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --h-----cCccccchhhH-HHHhhcccc--CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHCCCHhHHHHHHHHHHHHH
Confidence 1 11211 222 233333322 3568888875 57877544344444444433322456667889999999
Q ss_pred hHHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHHHH------HHhh-HhhcCCCCCCCCHHHHHHHHHH---HHHHHHHHc
Q 040427 204 LHCDFACLLYSLLRTK-L-SEERVKALVKEAVEIE------REFV-CDALPCALVGMNGELMSQYIEF---VADRLLGAL 271 (329)
Q Consensus 204 ~H~~~~~~l~~~l~~~-~-~~~~v~~~~~eav~~E------~~~~-~~~~~~~~~Gl~~~~~~~yi~y---~an~~l~~l 271 (329)
+|...+..+++.+..+ + +.+.+..-+......- ...+ ++..+...... ++..+.|++- ..-++|..+
T Consensus 235 Rh~~w~~alvk~~l~~dp~Nr~llq~wl~~w~wra~~Al~~lg~~~dY~~p~r~~s~-~e~~~~~~e~~~~~~~~~L~~~ 313 (511)
T 3u52_A 235 RHMTLGLEVIKFILEQHEDNVPIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSW-SEAWEVYYEQNGGALFKDLERY 313 (511)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH-HHHHHHHTHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999977744 2 2333343333322211 1222 23334222222 4455555433 234579999
Q ss_pred CCCCC
Q 040427 272 GYGKL 276 (329)
Q Consensus 272 G~~~~ 276 (329)
|++.+
T Consensus 314 Gl~~P 318 (511)
T 3u52_A 314 GIRPP 318 (511)
T ss_dssp TCCCC
T ss_pred CCCCC
Confidence 99875
No 26
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ...
Probab=97.07 E-value=0.014 Score=55.18 Aligned_cols=165 Identities=10% Similarity=-0.107 Sum_probs=108.1
Q ss_pred HHhcCCHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---h-HH
Q 040427 52 HWEALTADEK-HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD---S-DE 126 (329)
Q Consensus 52 ~~~~L~~~Er-~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d---~-~e 126 (329)
.+..+++.-+ ++++..++.+..++-....+.+ .+.+..+.+.++....+|+++|-+|+..-++.+..+..+ . ..
T Consensus 127 ~~~~ld~~w~~~~l~~~l~~~r~~Eyga~~~~a-~~~r~~~~~~i~na~~fqa~DeLRhaQ~~~~~~~~l~~~~~gf~~~ 205 (384)
T 1mty_B 127 QIRAMNPTWRDEFINRYWGAFLFNEYGLFNAHS-QGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDES 205 (384)
T ss_dssp GGGGSCHHHHHTTTTTHHHHHHHHHHHHHHTTH-HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred ccccCCHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcch
Confidence 3456899999 8999999999888866665554 578899999999999999999999999888886655311 0 00
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHh-hcCChhHHHHHHHHH-HHHHHHhHhHHHH-HHHHHh-cCCCcchHHHHHHHHhhh
Q 040427 127 KNRLFHAIETVPCVAKKATWALNW-IDGSETFAERLIAFA-CVEGIFFSGSFCA-IFWLKK-RGLMPGLTFSNELISRDE 202 (329)
Q Consensus 127 ~~~~~~~~~~~p~l~~k~~~~~~~-~~~~~~~~~~lv~~~-~lEgi~f~~~F~~-~~~l~~-~~~l~g~~~~i~~I~rDE 202 (329)
...-=..|.++|..+-=-+++.+. +.. .++.+.+++.. ++|+++.--.|.- +..++. +|=+ .+..++.-+.-||
T Consensus 206 ~~~~k~~W~~dp~wq~~R~~vE~~~l~~-~Dw~E~~va~nlv~epl~~~L~~~~~~~~~Aa~nGD~-~tp~l~~s~q~D~ 283 (384)
T 1mty_B 206 TAVPKAEWTNGEVYKSARLAVEGLWQEV-FDWNESAFSVHAVYDALFGQFVRREFFQRLAPRFGDN-LTPFFINQAQTYF 283 (384)
T ss_dssp SHHHHHHHHHCSTTHHHHHHHHHHHHTC-CCHHHHHHHHHHTHHHHHHHHHHHTTHHHHGGGGTCC-HHHHHHHHHHHHH
T ss_pred hHHHHHHHhhCchhHHHHHHHHHHHhhc-cCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCch-hHHHHHHHHHHHH
Confidence 000112345566544333333333 322 23678888875 4688754422222 233433 3322 3444556689999
Q ss_pred hhHHHHHHHHHHHHhcc
Q 040427 203 GLHCDFACLLYSLLRTK 219 (329)
Q Consensus 203 ~~H~~~~~~l~~~l~~~ 219 (329)
++|...+..+++.+.+.
T Consensus 284 ~Rh~~w~~alvk~lle~ 300 (384)
T 1mty_B 284 QIAKQGVQDLYYNCLGD 300 (384)
T ss_dssp HHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999988833
No 27
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=96.95 E-value=0.028 Score=50.56 Aligned_cols=179 Identities=20% Similarity=0.110 Sum_probs=98.5
Q ss_pred hHHHHHHHHH--HhCCCCCCc-cCccc-------cHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhc
Q 040427 25 PQIWEMYKKA--EASFWTAEE-VDLSQ-------DLRHW----EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEV 90 (329)
Q Consensus 25 ~~~~~ly~k~--~~~fW~p~e-id~~~-------D~~~~----~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~ 90 (329)
||+.+..... ....|.|.+ ||.++ ...+| .+||+.-+.++...+--=-.+.+.++ .| ....
T Consensus 16 ~~~~~~~~~~l~~~~~W~p~d~lPw~~~~~F~~~~~~~~~~~~~~L~d~~~~~l~~~~itEd~LP~Y~~-~L----~~~~ 90 (275)
T 1za0_A 16 PVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHR-EL----VEHF 90 (275)
T ss_dssp HHHHHHHHHHHHTCCCCCGGGGCCGGGCCCCGGGTSCCCCGGGCCSCHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhhhhccCChhhcCCCcccccchhcccccccHhhccCCHHHHHHHHHHHHHhhcchHHHH-HH----HHhc
Confidence 4444444432 346799988 66441 34456 36888877766555422222333321 22 2222
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhhcHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHH
Q 040427 91 -QVAEARAFYGFQIAIENIHSEMYSLLLETYI-KDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACV 167 (329)
Q Consensus 91 -~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~-~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~-~~~~~~~lv~~~~l 167 (329)
.++....|.....++|+.|+.+-..++-.-+ .||.. ++.. |...+..-++. ..+..+.++.-.+-
T Consensus 91 ~~d~~w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~-------lE~~-----~~~~i~~g~~~~~~~p~~~~vy~~fq 158 (275)
T 1za0_A 91 ILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVA-------NEDV-----RVQHVMKGYRAEKYTQVETLVYMAFY 158 (275)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCTTT-------TTCT-----TC----------CCCHHHHHHHHHHH
T ss_pred CCCchHHHHhhhHhHHHHHHHHHHHHHHHHhCCCCHHH-------HHHH-----HHHHhhcCCCCCCCCHHHHHHHHHHH
Confidence 1356788999999999999999988886422 25542 1110 00011111111 11233444433456
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHH
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEER 224 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~ 224 (329)
|..-+ .++. .+++..-=|-++++...|++||.+|..+...+++.+.+..|...
T Consensus 159 E~aT~-v~y~---n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd~~ 211 (275)
T 1za0_A 159 ERCGA-VFCR---NLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDET 211 (275)
T ss_dssp HHHHH-HHHH---HHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHH-HHHH---HHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence 76543 2222 33444446889999999999999999999999999886655443
No 28
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A
Probab=96.51 E-value=0.35 Score=44.80 Aligned_cols=175 Identities=13% Similarity=0.058 Sum_probs=95.2
Q ss_pred hCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHhh-cC---HHHHHHHHHHHHHHH
Q 040427 36 ASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAA-----SDGIVLENLAGRFMTE-VQ---VAEARAFYGFQIAIE 106 (329)
Q Consensus 36 ~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~-----~d~~v~~~l~~~~~~~-~~---~~E~~~~~~~q~~~E 106 (329)
..+|.|.+.-.--+-+-|..||+++|..+.+--..-.. .+.++..-+...++.. ++ ....+...-+.+.+|
T Consensus 57 ~~~~~p~ellpl~gtp~w~~l~~eqR~~L~~~e~~~~~s~~I~~E~~lv~~~~r~i~~~~~p~~~~~~~~ya~ltei~DE 136 (336)
T 3chh_A 57 LVPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDE 136 (336)
T ss_dssp TSCSSCGGGCTTTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCSTTTTCHHHHHHHHHHHHHH
T ss_pred CCCCCChhhccccCCHhHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 34666655555556677999999999987665322222 3333333333444444 12 234444435566799
Q ss_pred HHHHHHHHHHHHH----hcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH---HHHHHHHhHhHHHHH
Q 040427 107 NIHSEMYSLLLET----YIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF---ACVEGIFFSGSFCAI 179 (329)
Q Consensus 107 ~iH~~sYs~il~~----~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~---~~lEgi~f~~~F~~~ 179 (329)
+.|+..+.+..+. .+..+. +. ...+.+-.+........ +..+-..++.+ .+.|-+.= .+ .
T Consensus 137 ~~Hs~Mf~~~~~~~~~~~G~~~~-----~~--~p~~~l~r~l~~~la~~--~~~~~~~l~~~a~~lvaEeiid--~~--~ 203 (336)
T 3chh_A 137 SFHTYMHMLAIDRTRELRKISER-----PP--QPELVTYRRLRRVLADM--PEQWERDIAVLVWGAVAETCIN--AL--L 203 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC-----CC--CCCCHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSBC--HH--H
T ss_pred HHHHHHHHHHHHHHHHHcCCCCC-----CC--CChHHHHHHHHHHHccC--chhhhhHHHHHHHHHHHHHHHH--HH--H
Confidence 9999999999983 443311 10 01111211122222111 22222333332 23565531 11 1
Q ss_pred HHHHhcCCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHH
Q 040427 180 FWLKKRGLMP-GLTFSNELISRDEGLHCDFACLLYSLLRTKLSEE 223 (329)
Q Consensus 180 ~~l~~~~~l~-g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~ 223 (329)
-.+.+..-++ -+-.+++-=.+||++|+.|+..+++.+....++.
T Consensus 204 r~~~~D~~vQP~vR~v~riHv~DEaRH~~fare~~~~~~~~l~~~ 248 (336)
T 3chh_A 204 ALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQ 248 (336)
T ss_dssp HHHHTCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 2234444444 4445556668999999999999999998888754
No 29
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A
Probab=96.45 E-value=0.025 Score=53.66 Aligned_cols=153 Identities=9% Similarity=0.002 Sum_probs=91.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHH
Q 040427 52 HWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLL-ETYIKDSDEKNRL 130 (329)
Q Consensus 52 ~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il-~~~~~d~~e~~~~ 130 (329)
.|+.||++=|..+.++++.++-++-+-..-- ..+...+|+-..+.-+..-.-+|..|...+.+++ +.++.|.. +.
T Consensus 97 ~WqemP~eYR~~LiRlI~~haDSEiagve~e-~~wi~~APSL~~k~~L~aiVqDE~gHg~~mlyllae~fG~Dr~---e~ 172 (481)
T 3pf7_A 97 VWQEVPGEYRSTLRRIIVTQGDTEPASVEQQ-RHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGR---EE 172 (481)
T ss_dssp CBSSCCGGGHHHHHHHHHHHHHHHHHHHHHH-TTGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHH---HH
T ss_pred chhhCCHHHHHHHHHHHHHHhhhHHhhchhh-hhHHhcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCHH---HH
Confidence 4889999999999999998887774432221 2344566666666566666679999999888888 66654332 22
Q ss_pred HHHh----hhcHHHHHHHHHHHHhhcC-ChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhh
Q 040427 131 FHAI----ETVPCVAKKATWALNWIDG-SETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGL 204 (329)
Q Consensus 131 ~~~~----~~~p~l~~k~~~~~~~~~~-~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~ 204 (329)
.+.. ..++ +.-......+- -.+++.. +++. ++.|.- -.-+-.|.+. -.--++..++.|+..|+.
T Consensus 173 ad~LL~R~sGd~----~~pk~L~~FNyPt~~WaD~-~~f~~LvDrAg----i~qL~~L~~s-SY~PlARamr~I~kEEaf 242 (481)
T 3pf7_A 173 GEALLERRSGDE----DNPRILTAFNEKTPDWLSF-FMFTFITDRDG----KFQLASLAES-AFDPLARTCKFMLTEEAH 242 (481)
T ss_dssp HHHHHHCCTTCS----SSCCSSGGGSSCCCSHHHH-HHHHHHTHHHH----HHHHHHHTTC-SBHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccCCc----ccccccccccCCCCCHHHH-HHHHHhhhHHH----HHHHHHHHhC-CcHHHHHHHHHHhhHHHH
Confidence 2211 1110 00000111221 2345444 4443 566642 2222344443 334478889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 040427 205 HCDFACLLYSLLRT 218 (329)
Q Consensus 205 H~~~~~~l~~~l~~ 218 (329)
|...|-..+..+.+
T Consensus 243 H~~~Ge~gl~rli~ 256 (481)
T 3pf7_A 243 HLFVGESGIARVIQ 256 (481)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999987776653
No 30
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6
Probab=96.07 E-value=0.55 Score=39.60 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH--HHHHHHHHh
Q 040427 57 TADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD--EKNRLFHAI 134 (329)
Q Consensus 57 ~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~--e~~~~~~~~ 134 (329)
|+.=|+++.++=+-..-++.---+|.. .+...+|. -+-=+..-+-||++|.+.|.-.=+.+...|+ --.+.|...
T Consensus 28 s~~YkdAYSRINaIVIEGEqeA~dNyi-~la~llP~--~~dEL~rLakME~rH~kgF~aCGrNL~V~pDm~fA~~fF~~L 104 (244)
T 2oc5_A 28 SDRYKDAYSRINAIVIEGEQEAHDNYI-AIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPL 104 (244)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhheeeEechHHHHHhHH-HHHHHCcc--cHHHHHHHHHHHHHHHhHHHHhccCCcCCCCcHHHHHHHHHH
Confidence 456688888888777777766666665 35565554 3333666778999999999888888854443 122333322
Q ss_pred hhcHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHH
Q 040427 135 ETVPCVAKKATWALNWIDGSETFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY 213 (329)
Q Consensus 135 ~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~ 213 (329)
..+ .+++ ... ......++.-. ++|.. ..+.|.+.. .- .=|--.++-.-+.+||..|..||..-+
T Consensus 105 H~n---Fq~A------~~~-gkv~TCLlIQaLiIE~F-AIaAYniYI--pV--AD~FARkITegVVkDEY~HLNfGe~WL 169 (244)
T 2oc5_A 105 RDN---FQTA------LGQ-GKTPTCLLIQALLIEAF-AISAYHTYI--PV--SDPFARKITEGVVKDEYTHLNYGEAWL 169 (244)
T ss_dssp HHH---HHHH------HHT-TCHHHHHHHHHTHHHHH-HHHHHHHHG--GG--SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHH------Hhc-CCeeehHHHHHHHHHHH-HHHHHhhcc--cc--ccHHHHHHHHhHHhhHHhhcchHHHHH
Confidence 211 1111 111 11222223222 45542 122222211 00 001223466789999999999998766
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHHhhHhhc-CCCCCCCCHHHH-HHHHHHHHHHHHHHcCCCC
Q 040427 214 SLLRTKLSEERVKALVKEAVEIEREFVCDAL-PCALVGMNGELM-SQYIEFVADRLLGALGYGK 275 (329)
Q Consensus 214 ~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~-~~~~~Gl~~~~~-~~yi~y~an~~l~~lG~~~ 275 (329)
+.-.. .+++++.+.-++...+-.+.++..- +..++|++++.+ ..|+- .--..|.++|+..
T Consensus 170 k~~f~-~~K~el~~ANr~nLPlv~~MLnqV~~Da~vL~MekealvedFmi-~YgEAL~~IGF~t 231 (244)
T 2oc5_A 170 KANLE-SCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLI-AYQESLTEIGFNT 231 (244)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH-HHHHHHHHHTCCH
T ss_pred HHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHHHHHcCCcH
Confidence 54432 2345555555565665555554333 336789997655 44543 3456788899864
No 31
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=92.89 E-value=4.6 Score=35.54 Aligned_cols=191 Identities=9% Similarity=0.040 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-ChHHHHHHHHHhhhcHHHHH
Q 040427 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY-IK-DSDEKNRLFHAIETVPCVAK 142 (329)
Q Consensus 65 ~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~-~~-d~~e~~~~~~~~~~~p~l~~ 142 (329)
.+.+..++-.+-+.+..+. .-....|.-|.+..++..+-+|.=|++.+-.+..++ +. |+++ + . +...+.
T Consensus 6 ~~~l~~laD~elil~~r~~-eW~~~AP~LEediAlanialDelGhar~ly~~a~~l~G~~~~D~---L-a-~~R~~~--- 76 (249)
T 1otk_A 6 TAYTLRLGDNCLVLSQRLG-EWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDT---L-A-FTRDER--- 76 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHH---H-H-HSCCGG---
T ss_pred HHHHHHHhCHHHHhccccc-hHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH---H-H-HhcCHH---
Confidence 3444444444433333333 245577888999999998889999999999999988 65 3322 2 1 111111
Q ss_pred HHHHHHH-hhc-CChhHHHHHHHHHHHHHHHhHhHHHHHHHHH-hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 040427 143 KATWALN-WID-GSETFAERLIAFACVEGIFFSGSFCAIFWLK-KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK 219 (329)
Q Consensus 143 k~~~~~~-~~~-~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~-~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
++-+- ..+ ...+|+..++.. +++.++..+..-. .+.--+-++.+...|++.|.-|..++...+..|...
T Consensus 77 --~frn~~l~e~P~gdwa~ti~r~------~l~d~~~~~~~~~L~~ss~~plA~ia~K~~kEe~yH~~h~~~w~~rL~~g 148 (249)
T 1otk_A 77 --QFSNLLLVEQPNGNFADTIARQ------YFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNG 148 (249)
T ss_dssp --GCCCCGGGGSCCCSHHHHHHHH------HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HhhccHHHcCCCCCHHHHHHHH------HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00000 111 123566554432 3445555544321 244567899999999999999999999988888632
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHhhcCC---------CCCCCCHHHHHHHHHHHHHHHHHHcCCC
Q 040427 220 LSEERVKALVKEAVEIEREFVCDALPC---------ALVGMNGELMSQYIEFVADRLLGALGYG 274 (329)
Q Consensus 220 ~~~~~v~~~~~eav~~E~~~~~~~~~~---------~~~Gl~~~~~~~yi~y~an~~l~~lG~~ 274 (329)
.++-++.+++|++.=--++...|+. ..++.+.+++.+=-.-.....|..+|++
T Consensus 149 --T~Es~~r~Q~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~~v~~~l~~agL~ 210 (249)
T 1otk_A 149 --TDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN 210 (249)
T ss_dssp --CHHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHHHHHHHHHHTTCC
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCC
Confidence 3455777777777443344333421 1122344555444444556666777774
No 32
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4
Probab=91.09 E-value=6.6 Score=33.45 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=121.6
Q ss_pred HHHHHHHhCCCCC-CccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHH-
Q 040427 29 EMYKKAEASFWTA-EEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIE- 106 (329)
Q Consensus 29 ~ly~k~~~~fW~p-~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E- 106 (329)
.|.++.. |.+ ...|+-+.+.+ .+||.+.-..+..--..+ +. ...+.++ ......++++.+..+...+..|
T Consensus 11 ~L~~~~~---~~~~~~HPf~~~l~~-G~L~~e~~~~yl~qdy~y--l~-~f~~~~a-~~~~~~~~~~~~~~~~~~i~~e~ 82 (231)
T 1rcw_A 11 QLDLIIQ---NKHMLEHTFYVKWSK-GELTKEQLQAYAKDYYLH--IK-AFPKYLS-AIHSRCDDLEARKLLLDNLMDEE 82 (231)
T ss_dssp HHHHHHH---HTCGGGSHHHHHHHT-TCCCHHHHHHHHHHTHHH--HH-HHHHHHH-HHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhhcccCHHHHHHhC-CCCCHHHHHHHHHHhHHH--HH-HHHHHHH-HHHhcCCCHHHHHHHHHHHHHhc
Confidence 4554444 544 45555443321 368766544332221111 11 1122222 3455778888888888777777
Q ss_pred ---HHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHH--HHH
Q 040427 107 ---NIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCA--IFW 181 (329)
Q Consensus 107 ---~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~--~~~ 181 (329)
..|.+.|.+.++.++.++++ .....-.|..+.-.+++.+...+. ++...+.++.+.|++.- ..+. .-.
T Consensus 83 ~~~~~h~~l~~~~~~~~Gi~~~~----~~~~~~~p~t~~y~~~~~~~~~~~-~~~~~laal~~~E~~~~--~~~~~~~~~ 155 (231)
T 1rcw_A 83 NGYPNHIDLWKQFVFALGVTPEE----LEAHEPSEAAKAKVATFMRWCTGD-SLAAGVAALYSYESQIP--RIAREKIRG 155 (231)
T ss_dssp SSSSCHHHHHHHHHHHTTCCHHH----HHHCCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHTTHH--HHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHcCCCHHH----HhcCCCCHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 68999999999999887753 333445677777777777766543 45666666445576631 1111 011
Q ss_pred HHh-cCCC--cchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 040427 182 LKK-RGLM--PGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 182 l~~-~~~l--~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~ 244 (329)
+.. .+.. -+..---.++.-| ..|+..+..++..+.. ...+++.+.+..+.++|..|-+.+.
T Consensus 156 ~~~~~~wi~~~~~~~f~~h~~~d-~~h~~~~~~~l~~~~~-~~~~~~~~~~~~~~~le~~fwd~~~ 219 (231)
T 1rcw_A 156 LTEYFGFSNPEDYAYFTEHEEAD-VRHAREEKALIEMLLK-DDADKVLEASQEVTQSLYGFLDSFL 219 (231)
T ss_dssp HHHHSCCCSGGGGHHHHHHHHHH-HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCCChhhhHHHHHHHHHh-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2333 2334444566667 4799999999888876 4677899999999999999998665
No 33
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=89.66 E-value=5 Score=29.81 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=53.3
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH
Q 040427 54 EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126 (329)
Q Consensus 54 ~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e 126 (329)
.+||+..++...-+-+...-++ +.++=..++...++|+++.++.-.+-+|..|+-.+-.+|+.+ ||..
T Consensus 11 ~~ls~~~~d~~rai~aL~~Ele---AI~~Y~q~A~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~--dp~~ 78 (95)
T 1zpy_A 11 QELSDETRDMHRAIISLREELE---AVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPAF 78 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHH
Confidence 4799999987776664444444 334445688899999999999999999999999999999987 5653
No 34
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1}
Probab=88.43 E-value=14 Score=33.83 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=88.1
Q ss_pred HHHhhcCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIE-------NIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETF 157 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E-------~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~ 157 (329)
......++++.+..+.....+| ..|.+.|..+++.++.+++ +......|....-.+.......+. ++
T Consensus 162 ~~~a~~~~~~~r~~l~e~i~DE~G~g~~e~~H~el~~~~l~~lGld~~-----~~~~~~~p~~~~~v~~~~~~~~~~-~~ 235 (332)
T 3bjd_A 162 DLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEAD-----FQAVSTMPEEIAYLNNRARAFRHA-EV 235 (332)
T ss_dssp HHHHTCCSHHHHHHHHHHHHHHTTTTCGGGCHHHHHHHHHHHTTCCCC-----TTCCCCCHHHHHHHHHHHHHHHCS-ST
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHcCCChh-----HhcccCCHHHHHHHHHHHHHHhcC-CH
Confidence 3556678888888887766666 3689999999999987764 233444666555555555544333 34
Q ss_pred HHHHHHHHHHHHHHhHhHHHHH-HHHHhcCCCc-chHHHHHHHHhhhhhHH-HHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 040427 158 AERLIAFACVEGIFFSGSFCAI-FWLKKRGLMP-GLTFSNELISRDEGLHC-DFACLLYSLLRTKLSEERVKALVKEAVE 234 (329)
Q Consensus 158 ~~~lv~~~~lEgi~f~~~F~~~-~~l~~~~~l~-g~~~~i~~I~rDE~~H~-~~~~~l~~~l~~~~~~~~v~~~~~eav~ 234 (329)
...+.++.+.|+... .+|.-+ -.+.+.|.-+ +..---.+|.-|. .|. .....++..+.....+..+...+..+++
T Consensus 236 ~~alaal~~~E~~~p-~~y~~i~~~l~~~g~~~~~~~yf~~HI~lD~-~H~~~~~~~ll~~~~~~~~q~~~~~a~~~~l~ 313 (332)
T 3bjd_A 236 GWGLAVFYITELVVP-GNHEKLYRALLQAGLSEDQAEYYKVHISLVP-PRAKREWQLIARRIPDVQFQNAFLTSLSQHFR 313 (332)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTCCTTTTHHHHHHHHHCC----CTTHHHHHTTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhH-HHHHHHHHHHHHcCCCcccchHHHHHHHHhH-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456555567899753 334333 3566666523 4455668888888 488 3333332222111111234444555558
Q ss_pred HHHHhhHhhc
Q 040427 235 IEREFVCDAL 244 (329)
Q Consensus 235 ~E~~~~~~~~ 244 (329)
.+..|.+.+.
T Consensus 314 ~~~~f~D~l~ 323 (332)
T 3bjd_A 314 VERAYYDAIW 323 (332)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888776543
No 35
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=84.15 E-value=21 Score=31.17 Aligned_cols=139 Identities=12% Similarity=-0.078 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH-HhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 93 AEARAFYGFQIAIENI-------HSEMYSLLLE-TYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~i-------H~~sYs~il~-~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
++...-+..=..+|.= |.+.|.+.++ +++.|++. ..-.|.-++-++-+.+++ +. +...++-++
T Consensus 72 ~~~~~eL~~NL~EE~G~~d~~~~H~~lyRr~L~~~lGld~~~-------~~p~~sT~~~idt~~~lc-s~-d~~~aLGA~ 142 (244)
T 3b5o_A 72 NGVAQELQENIDEEMGSTTGGISHYTLLADGLEEGLGVAVKN-------TMPSVATSKLLRTVLSLF-DR-QVDYVLGAT 142 (244)
T ss_dssp HHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHCCCCTT-------CCCCHHHHHHHHHHHHHH-TS-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHhcCCCccc-------cCCCchHHHHHHHHHHHh-CC-CHHHHHHHH
Confidence 5555555555567754 9999999999 99888853 233455555556666677 43 345666666
Q ss_pred HHHHHHHhHh--HHHHH-HHHHhcCCCcchH-HHHHHHHh-hhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Q 040427 165 ACVEGIFFSG--SFCAI-FWLKKRGLMPGLT-FSNELISR-DEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREF 239 (329)
Q Consensus 165 ~~lEgi~f~~--~F~~~-~~l~~~~~l~g~~-~~i~~I~r-DE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~ 239 (329)
..+|++.-+. -+.-+ -.|.+. .+|.-. .-+.+=.. +|.-|..-...++....+......+.+-+..+++....|
T Consensus 143 yatE~iaipe~~ly~~li~gL~~~-~~~~~~l~FF~~HidelE~~Ha~~l~~~l~~~~~~eef~~~~~G~~~~Lda~~~f 221 (244)
T 3b5o_A 143 YAIEATSIPELTLIVKLVEWLHEG-AIPKDLQYFFSKHLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVW 221 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHC-------CHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHHhC-CCchhHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 6899984441 12222 234333 444422 33343334 788999988888876655444677777778888877666
Q ss_pred hH
Q 040427 240 VC 241 (329)
Q Consensus 240 ~~ 241 (329)
-+
T Consensus 222 Wd 223 (244)
T 3b5o_A 222 WQ 223 (244)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 36
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217}
Probab=82.20 E-value=23 Score=30.32 Aligned_cols=150 Identities=10% Similarity=-0.023 Sum_probs=85.1
Q ss_pred HHhhcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHH
Q 040427 86 FMTEVQVAE--ARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIA 163 (329)
Q Consensus 86 ~~~~~~~~E--~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~ 163 (329)
.+...++++ .+..+...+..|.-|-..+-+-++.++.++++ .....-.|....-++++....... ++...+.+
T Consensus 62 a~~ka~~~~~~~~~~~~~~~~~e~~~e~~~~~~l~~~G~~~~~----~~~~~~~pat~aY~~~l~~~a~~~-~~~~~la~ 136 (239)
T 3dde_A 62 VGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDRED----VLSSKPLPATETLIAYLYWISATG-NPVQRLGY 136 (239)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHTTTHHHHHHHHHHTTCCHHH----HHTCCCCHHHHHHHHHHHHHHHSS-CGGGGHHH
T ss_pred HHHhCCCchHHHHHHHHHHHHHHHChHHHHHHHHHHhCCCHHH----HHhCCCChHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 344556655 66677777677766766665668888777643 344455788877778877665432 23344445
Q ss_pred HHHHHHHHhHhHHHHHHHHHhcCCCcc--hHHHHHHHHhhhhhHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhh
Q 040427 164 FACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDEGLHCDFACLLYSLLRT-KLSEERVKALVKEAVEIEREFV 240 (329)
Q Consensus 164 ~~~lEgi~f~~~F~~~~~l~~~~~l~g--~~~~i~~I~rDE~~H~~~~~~l~~~l~~-~~~~~~v~~~~~eav~~E~~~~ 240 (329)
..++||+.-.++-. .-.+.+.--+|. +.-..-...-|+ .|......++..+.. ....+.|.+.++.+.++...+.
T Consensus 137 ~~~~E~~y~~~~~~-~~~l~~~~~l~~~~~~f~~~h~~~d~-~h~~~~~~~ld~~~~~~~~~~~ii~~a~~~~~l~~~~f 214 (239)
T 3dde_A 137 SYWAENVYGYIDPV-LKAIQSTLDLTPQSMKFFIAHSKIDA-KHAEEVNEMLHEVCKTQEDVDSVVAVMENSLVLTARIL 214 (239)
T ss_dssp HHHHHTCHHHHHHH-HHHHHHHTTCCGGGGHHHHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHH-HHHHHHHhCcCHHHHHHHHHHHhcch-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899985122222 223443322453 233333334455 688887777777642 2223455666666666666655
Q ss_pred Hh
Q 040427 241 CD 242 (329)
Q Consensus 241 ~~ 242 (329)
+.
T Consensus 215 ~~ 216 (239)
T 3dde_A 215 DD 216 (239)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 37
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=81.83 E-value=23 Score=29.95 Aligned_cols=111 Identities=14% Similarity=-0.006 Sum_probs=68.9
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 040427 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVE 168 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lE 168 (329)
.-.-+++..++..++..|..|++-|..++..+..++. + .+ .|. ..+. +..+.|-.-.--|
T Consensus 56 ~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~----i--~~--~p~---------~~~g---st~enL~~a~~gE 115 (202)
T 1yuz_A 56 EQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYE----K--PT--VAA---------PSAY---SCDLNLISGANGE 115 (202)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCC----C--CC--C-----------CCCC---CHHHHHHHHHHHH
T ss_pred HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce----e--cc--CCc---------cCCC---CHHHHHHHHHHhH
Confidence 3344789999999999999999999999998865542 1 11 131 0011 1111111111122
Q ss_pred HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 040427 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK 219 (329)
Q Consensus 169 gi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
.--....+.-+.-.++.-....++..+++|.++|..|......++..+...
T Consensus 116 ~~E~t~my~~~a~~A~eEgd~~~a~~f~~i~~~E~~H~~~~~~ll~~l~~~ 166 (202)
T 1yuz_A 116 IYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAERYLAAYNDIDAP 166 (202)
T ss_dssp HHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222222233333345555578899999999999999999888888777644
No 38
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=76.50 E-value=21 Score=26.44 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 040427 54 EALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125 (329)
Q Consensus 54 ~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~ 125 (329)
.+||+..++...-+.+.-.-+| .-++=...+...++|+++.++.-.+-+|-.|...+..+|+.+ ||.
T Consensus 11 e~Ls~e~~d~~Rai~sl~~Ele---AI~~Y~q~a~~~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~--Dp~ 77 (95)
T 3k6c_A 11 QELSDETRDMHRAIISLREELE---AVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRC--DPA 77 (95)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHH
Confidence 4789988877666554333334 334444577888999999999999999999999999999976 664
No 39
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2
Probab=73.67 E-value=19 Score=32.01 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ChH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK-DSD 125 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~-d~~ 125 (329)
..+.+....|-.+..++..+.+|++|..+|.++++.++. ||.
T Consensus 167 ~n~a~~~~dPvL~~i~~~IA~DE~RH~~~y~~~v~~~le~dpd 209 (275)
T 1za0_A 167 RNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD 209 (275)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 346678889999999999999999999999999998852 443
No 40
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A
Probab=72.52 E-value=48 Score=28.87 Aligned_cols=120 Identities=9% Similarity=-0.013 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcc
Q 040427 111 EMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPG 190 (329)
Q Consensus 111 ~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g 190 (329)
..+..+++.++.++++ + ....|..+.-.+++.....+ .++...++++..+|.++...|- .+..... +.
T Consensus 127 ~lh~~~~~~~Gi~~~~---~---~~~~pat~aYt~~ll~~a~~-g~~~~~laAl~pC~~~Y~eig~----~l~~~~~-~~ 194 (258)
T 2a2m_A 127 EYNETYHQTWHLREAS---G---LIPGTDIKDYADYEAYVAGS-LASPYMCVVMLPCEYLWPWIAN----FLDGYTP-TN 194 (258)
T ss_dssp HHHHHHHHTSCBCCGG---G---BCCCHHHHHHHHHHHHHHHH-SCTHHHHHHHHHHHHHHHHHHH----HHGGGSC-TT
T ss_pred HHHHHHHHHcCCCHHH---c---cCCCHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHH----HHHhccC-CC
Confidence 4455667777655442 2 44567777777777765432 2467777777767766544332 2232211 22
Q ss_pred hHHHHHHHH---hhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhhc
Q 040427 191 LTFSNELIS---RDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 191 ~~~~i~~I~---rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~~ 244 (329)
..--.||. .|| -++.....++..+..+.+.+++.+++..+++.|..|-+...
T Consensus 195 -~~Y~~WI~~~Y~~~-~~v~~~~~lld~~~~~~~~~~l~~~F~~a~~lE~~Fwd~a~ 249 (258)
T 2a2m_A 195 -SLYRFWIEWNGGTP-NGAYQMGNMLEQYRDKIDEDKAVEIFNTAMNYELKVFTSST 249 (258)
T ss_dssp -STTHHHHHHHCSCC-HHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -chHHHHHHhccCCH-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11235666 777 78888888877776666688899999999999999988765
No 41
>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}
Probab=70.13 E-value=39 Score=26.78 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=62.8
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 040427 86 FMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFA 165 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~ 165 (329)
.+..-.-|++..++..++..|..|++.+-.+|..+ .+|. ...| +. +..+.|-.-.
T Consensus 37 ~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~-~~p~---------~~~~------------~~---~T~enL~~A~ 91 (144)
T 4di0_A 37 KADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAV-GDPA---------TGLP------------FG---TSRQNLQSAI 91 (144)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCTT---------TSCC------------CS---SHHHHHHHHH
T ss_pred HHHHCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcc---------cCCC------------CC---cHHHHHHHHH
Confidence 33344448899999999999999999877777654 2441 0001 11 1112222111
Q ss_pred HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040427 166 CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL 215 (329)
Q Consensus 166 ~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~ 215 (329)
.-|.--....|..+...++.--.+.++..++.|++||..|......++..
T Consensus 92 ~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~~~a~~E~~Ha~~~~~~l~~ 141 (144)
T 4di0_A 92 AGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDG 141 (144)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222211223333334555458999999999999999999987776653
No 42
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}
Probab=69.04 E-value=19 Score=26.61 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=40.6
Q ss_pred hHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 156 TFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 156 ~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
.+.+++.+.. =+|.|.+|...+.. -.-|.+..++.-|+.+|-.|.+-...+++.+
T Consensus 19 d~~Rai~sl~~EleAI~~Y~q~a~~------~~d~~~k~vl~~i~~EEkeH~g~~lelLrr~ 74 (95)
T 3k6c_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666544 37888887766554 4568899999999999999999777665544
No 43
>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A
Probab=67.79 E-value=62 Score=28.21 Aligned_cols=150 Identities=11% Similarity=-0.055 Sum_probs=96.5
Q ss_pred HHhhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 86 FMTEVQVAEARAFYGFQIAIE-NIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~~E-~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
.....++++...++..++... ......+..+++.++.++++ .......|....-.+++.....+ .++...++++
T Consensus 85 a~aka~~~~~~~~l~~~i~~~~~~E~~lh~~~~~~~Gi~~~~----l~~~~~~pat~aYt~~l~~~a~~-g~~~~~laAl 159 (263)
T 2qcx_A 85 GAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEE----RKAFKPSPTAYSFTSHMYRSVLS-GNFAEILAAL 159 (263)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH----HHSCCCCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc-CCHHHHHHHH
Confidence 444567777777766654432 12344555567888777653 34455678888888888876544 3577777777
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcc--hHHHHHHHHhhh-hhHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHH
Q 040427 165 ACVEGIFFSGSFCAIFWLKKRGLMPG--LTFSNELISRDE-GLHCDFACLLYSLLRTKLSE---ERVKALVKEAVEIERE 238 (329)
Q Consensus 165 ~~lEgi~f~~~F~~~~~l~~~~~l~g--~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~v~~~~~eav~~E~~ 238 (329)
..+|.++...|- .+..... |. ..+=|+.=.-+| .-|+.....++..+....++ +++.+++..+++.|..
T Consensus 160 ~pC~w~Y~~ig~----~l~~~~~-~~~~Y~~WI~~y~~~df~~~v~~~~~lld~l~~~~s~~~~~~l~~~F~~a~~lE~~ 234 (263)
T 2qcx_A 160 LPCYWLYYEVGE----KLLHCDP-GHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQ 234 (263)
T ss_dssp HHHHHHHHHHHH----HHTTCCC-CSHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHhccC-CCcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 778887654332 2333322 33 123333333455 57999999999888766654 4678899999999999
Q ss_pred hhHhhcC
Q 040427 239 FVCDALP 245 (329)
Q Consensus 239 ~~~~~~~ 245 (329)
|-+....
T Consensus 235 Fwd~a~~ 241 (263)
T 2qcx_A 235 FWGMAYR 241 (263)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9987763
No 44
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=67.20 E-value=25 Score=26.03 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=42.0
Q ss_pred hHHHHHHHHH-HHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040427 156 TFAERLIAFA-CVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLL 216 (329)
Q Consensus 156 ~~~~~lv~~~-~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l 216 (329)
++.+++.+.. =+|+|.+|...+.. -.-|.+..+..-|+.+|-.|++-...+++.+
T Consensus 19 d~~rai~aL~~EleAI~~Y~q~A~~------t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 19 DMHRAIISLREELEAVDLYNQRVNA------CKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566766654 38999988877665 4558899999999999999999777665544
No 45
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=64.69 E-value=48 Score=25.85 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=65.4
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 040427 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLET--YIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFAC 166 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~--~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~ 166 (329)
.-.-+.+..++-.|+..|..|+..+-..+.. ++ .|. . ..| +.+ ..+.+-.-.-
T Consensus 36 ~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg-~p~--------~-~~p------------~~~---~~e~L~~al~ 90 (144)
T 1j30_A 36 EEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT-DPA--------T-DKP------------IGT---LEQMIESAIA 90 (144)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCB-CTT--------T-SCB------------CSS---HHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CCC--------c-CCC------------Ccc---HHHHHHHHHH
Confidence 3344888999999999999999988777765 53 231 0 111 111 1111111111
Q ss_pred HHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 167 VEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 167 lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.|.--....+.-+...++...-+.+...++.|..||..|......++..+.
T Consensus 91 ~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~i~ 141 (144)
T 1j30_A 91 GETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLK 141 (144)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222233444445566667889999999999999999999888877664
No 46
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=64.48 E-value=47 Score=27.55 Aligned_cols=61 Identities=13% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC-------C---HHHHHHHHHHHHHHHHHhhH
Q 040427 180 FWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL-------S---EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~-------~---~~~v~~~~~eav~~E~~~~~ 241 (329)
+++.+.| ++|++.-++..+.+|.-|..-....+..+-.++ + ...+.++++.++++|+..+.
T Consensus 34 ~~f~~~~-l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~~~~~s~~e~le~aL~~Ek~v~~ 104 (189)
T 3uno_A 34 VYFDSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3456667 999999999999999999986555444432221 1 14577888888888887554
No 47
>2hz8_A De novo designed DIIRON protein; four-helix bundle, de novo protein; NMR {Escherichia coli} PDB: 2lfd_A 2lff_A
Probab=63.04 E-value=17 Score=27.89 Aligned_cols=49 Identities=20% Similarity=0.209 Sum_probs=38.8
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhH
Q 040427 189 PGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 189 ~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~ 241 (329)
...-++|.-|.+||-.|...+..++. +. +++.-.+.+..|+..|.+-.+
T Consensus 61 ee~k~iI~eIr~DE~rH~~~F~~lY~---TG-~p~sY~eGL~~A~~~Eqeave 109 (115)
T 2hz8_A 61 PEKRQVIDKILEDEEKHIEWLKAASK---QG-NAEQFASLVQQILQDEQRHVE 109 (115)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHH---SS-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hC-ChHhHHHHHHHHHHHHHHHHH
Confidence 34556899999999999999999988 33 556777888888888876553
No 48
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=60.13 E-value=65 Score=26.05 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=43.7
Q ss_pred HHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh--------ccCC----HHHHHHHHHHHHHHHHHhhH
Q 040427 179 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR--------TKLS----EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 179 ~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~--------~~~~----~~~v~~~~~eav~~E~~~~~ 241 (329)
-+++.+.| +||++.-+..-+.+|.-|..-....+...- .+|+ ...+.++++.+.++|+....
T Consensus 27 a~~f~~~~-l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~i~~p~~~~~~~~~~e~le~aL~~Ek~v~~ 100 (168)
T 3e6s_A 27 SIWFDQND-WEGMAAYMLAESAEEREHGLGFVDFANKRNIPIELQAVPAPVSCAEWSSPEDVWQSILELEQANTR 100 (168)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCGGGTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcCCCCccccCCCHHHHHHHHHHHHHHHHH
Confidence 34567777 899999999999999999985554433331 1222 12467888889998887664
No 49
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=58.48 E-value=66 Score=25.39 Aligned_cols=58 Identities=19% Similarity=0.049 Sum_probs=42.6
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
..--++|++..+...+.+|..|..-....+..+-..|. .+.+.++++.+.+.|..++.
T Consensus 33 ~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (159)
T 4am5_A 33 EDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRIGQTVKEVLESDLAAEREARA 99 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 34458999999999999999999866655554433221 13577888888888888775
No 50
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV}
Probab=58.18 E-value=96 Score=27.17 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHHH
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF-ACVEGIF 171 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~-~~lEgi~ 171 (329)
.+++.++...+..|..|.+-+..+.+.++.++++ .......|.-..-+.++.+.... .++...+.|. ..+|+..
T Consensus 89 ~~~~~~l~~~i~vE~~H~~~~~~f~~~~Gis~ee----l~~~~~~P~~~aYt~~ml~~a~~-g~l~e~lAAl~ya~e~~i 163 (262)
T 3oql_A 89 DMARRWLMRNIRVELNHADYWVNWCAAHDVTLED----LHDQRVAPELHALSHWCWQTSSS-DSLAVAMAATNYAIEGAT 163 (262)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHTTTCCHHH----HHHTCSCGGGGHHHHHHHHHHHH-SCHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCHHH----HhcCCCChHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHh
Confidence 4677787777777888998888899988877653 33444556666666666654322 2355666654 4555543
Q ss_pred hHhHHHHHHHHHhcCC----CcchH---HHHHHH---HhhhhhHHHHHHHHHHHHhccC-C---HHHHHHHHHHHHHHHH
Q 040427 172 FSGSFCAIFWLKKRGL----MPGLT---FSNELI---SRDEGLHCDFACLLYSLLRTKL-S---EERVKALVKEAVEIER 237 (329)
Q Consensus 172 f~~~F~~~~~l~~~~~----l~g~~---~~i~~I---~rDE~~H~~~~~~l~~~l~~~~-~---~~~v~~~~~eav~~E~ 237 (329)
---+= -...|+ .++.. ...+|| ..=...|..-...++..+.... + .+++.+.+....+.|.
T Consensus 164 g~~s~-----~~~~g~~~~~~~~~~~~~~~~~w~~~h~~~D~~H~~e~~~li~~l~~~~~~~~e~~~~~~a~~~S~~~~~ 238 (262)
T 3oql_A 164 GEWSA-----VVCSTGVYAEAFAEETRKKSMKWLKMHAQYDDAHPWEALEIICTLVGNKPSLQLQAELRQAVTKSYDYMY 238 (262)
T ss_dssp HHHHH-----HHHSSSHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHH-----HhhhhHHHhcCCCcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 21000 011221 11110 111222 2223479999999999888544 4 3467888999999999
Q ss_pred HhhHhhc
Q 040427 238 EFVCDAL 244 (329)
Q Consensus 238 ~~~~~~~ 244 (329)
.|.+.+.
T Consensus 239 ~fld~~y 245 (262)
T 3oql_A 239 LFLERCI 245 (262)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998776
No 51
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=57.35 E-value=73 Score=26.01 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=43.9
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 040427 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL--------SE--ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~v~~~~~eav~~E~~~~~ 241 (329)
...| ++|++..++-...+|..|..-....++.+-..+ +. ..+.++++.+++.|...+.
T Consensus 37 ~~~g-f~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~~~~~~~e~l~~~l~~E~~~~~ 104 (189)
T 3oj5_A 37 DSED-LPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALALDQERTVTD 104 (189)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 5556 999999999999999999997777766653321 11 2477888888888887664
No 52
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=57.17 E-value=81 Score=26.01 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=70.0
Q ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHH-HHHHHHH--hhhcHHHHHHHHHHHHhh-cCChhHHHHHH
Q 040427 87 MTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE-KNRLFHA--IETVPCVAKKATWALNWI-DGSETFAERLI 162 (329)
Q Consensus 87 ~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e-~~~~~~~--~~~~p~l~~k~~~~~~~~-~~~~~~~~~lv 162 (329)
+..-.-+++...+...+..|..|++-|..++..+-.+... .-+..+- -...|. ..+ ++.++.-+.|-
T Consensus 51 A~~EG~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~~v~~~~~p~---------~~~~~T~eN~~~~L~ 121 (179)
T 3qhb_A 51 ARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQI---------DAVASDSRGLRRALE 121 (179)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHHHHHHHHHTH---------HHHHHSHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc---------cccCcHHHHHHHHHH
Confidence 3333448888889999999999999999988866332100 0000110 111221 011 11122111122
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 163 AFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 163 ~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
+-.-.|.--....|--+.-.++.--.+.++..++.|.++|..|......++..+.
T Consensus 122 ~A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l~ 176 (179)
T 3qhb_A 122 TALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLL 176 (179)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333222223333334466666899999999999999999999998887765
No 53
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=54.64 E-value=86 Score=25.51 Aligned_cols=100 Identities=6% Similarity=-0.103 Sum_probs=60.1
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAF 164 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~ 164 (329)
..+..-.-|++...+..++..|..|++-.-..|..+ .+.. ..|+ .-
T Consensus 30 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~i-~~t~------------enL~---------------------~a 75 (170)
T 3pwf_A 30 EKAEQEGFPNIAKLFRAIAYAEFVHAKNHFIALGKL-GKTP------------ENLQ---------------------MG 75 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCHH------------HHHH---------------------HH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CChH------------HHHH---------------------HH
Confidence 344454558899999999999999998654443221 1110 1111 00
Q ss_pred HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 165 ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 165 ~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
.--|.--....|.-+...++.--...++..+++|.+||..|......++..+..
T Consensus 76 ~~gE~~e~~~mY~~~a~~A~eeg~~~~a~~f~~i~~~E~~H~~~~~~~l~~l~~ 129 (170)
T 3pwf_A 76 IEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK 129 (170)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 001111111122222233544446889999999999999999999988888764
No 54
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=54.31 E-value=92 Score=25.74 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=63.5
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 88 TEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
..-.-+.+..++-.|+..|..|+.-+-..+. +..+. ... ..|. ..+. +..+.+-.-.--
T Consensus 35 ~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~-----i~~--~~p~---------~~~~---s~~e~l~~al~~ 93 (191)
T 1lko_A 35 KKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLE-----IVA--AFPA---------GIIA---DTHANLIASAAG 93 (191)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCC-----CCC--CCCC---------CCCC---CHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCcc-----ccC--cCCc---------cccC---CHHHHHHHHHHh
Confidence 3334488999999999999999986655553 22221 000 0010 0000 111111111112
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
|..-....+.-+...++.-....++..++++..+|..|......++..+..
T Consensus 94 E~~e~t~~y~~~~~~A~eegd~~~~~~f~~~~~~E~ehe~~~~~~l~~l~~ 144 (191)
T 1lko_A 94 EHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE 144 (191)
T ss_dssp HHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 222222234444445655557889999999999999999999988887764
No 55
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=53.64 E-value=79 Score=26.48 Aligned_cols=60 Identities=10% Similarity=-0.046 Sum_probs=44.3
Q ss_pred HHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC--------HHHHHHHHHHHHHHH-HHhh
Q 040427 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS--------EERVKALVKEAVEIE-REFV 240 (329)
Q Consensus 181 ~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~--------~~~v~~~~~eav~~E-~~~~ 240 (329)
..++.--+++++..++.++.+|..|......++..+-..+. -....+.++.+++.| .+|.
T Consensus 52 ~~A~~eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i~~~p~~~~gst~enL~~a~~gE~~E~t 120 (202)
T 1yuz_A 52 KAAREQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYETS 120 (202)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccCCccCCCCHHHHHHHHHHhHHHHHH
Confidence 34566668999999999999999999988877776522211 124678888888888 6664
No 56
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=52.44 E-value=44 Score=26.22 Aligned_cols=58 Identities=16% Similarity=0.043 Sum_probs=43.8
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+.-+..+|..|..-....++.+-..+. ...+.++++.+++.|...+.
T Consensus 35 ~~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 101 (161)
T 3uoi_A 35 DNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999987777666643321 13467788888888887664
No 57
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=48.17 E-value=1e+02 Score=24.57 Aligned_cols=120 Identities=12% Similarity=0.063 Sum_probs=68.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH-hhhcHHHHHHHHHHHHhhcCChhHHHHHH
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHA-IETVPCVAKKATWALNWIDGSETFAERLI 162 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~-~~~~p~l~~k~~~~~~~~~~~~~~~~~lv 162 (329)
..++..+++|+++..+..-+.+|..|.+.+..++..+.++.. ..+. ..-.|.+... ...+....+.. ..+
T Consensus 40 ~~~A~~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~L 110 (175)
T 2fzf_A 40 KSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKE----VVFPKEHIGPELQPV----ARELEKVQDII-DLI 110 (175)
T ss_dssp HHHHHSCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCC----CCCCSCCBSCCCCCC----CSCCCSHHHHH-HHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----Ccchhhhhhhhhhhh----HHhccccCCHH-HHH
Confidence 357777888999999999999999999999999987632110 0000 0000000000 00000011111 112
Q ss_pred HHH-HHH--HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhc
Q 040427 163 AFA-CVE--GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT 218 (329)
Q Consensus 163 ~~~-~lE--gi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~ 218 (329)
..+ -.| ++-||..++-. -.=+.+.+++..|++||..|......++..+..
T Consensus 111 ~~ai~~E~~a~~~Y~~~a~~------~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l~~ 163 (175)
T 2fzf_A 111 RWAMKAEEIAAEFYLKLEEM------VKEEEKKRLMRYLADMERGHYYTLRAEYELLLN 163 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHT------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 121 222 34444333322 223899999999999999999988888776653
No 58
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A
Probab=47.34 E-value=88 Score=28.59 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040427 85 RFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121 (329)
Q Consensus 85 ~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~ 121 (329)
.++.....|-++..++..+.+|++|..+|.++++.++
T Consensus 183 r~A~~~gdPvLa~i~~~IA~DE~RH~~~Y~~~v~~~l 219 (338)
T 2uw1_A 183 KLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLA 219 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455578899999999999999999999999999775
No 59
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=46.89 E-value=55 Score=26.28 Aligned_cols=57 Identities=16% Similarity=0.046 Sum_probs=43.7
Q ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 185 ~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
..-+|+++..+..+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 39 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~al~~E~~~~~ 104 (179)
T 1nfv_A 39 DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVVTGQAVPVIYESDADQEDATIE 104 (179)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4457999999999999999999988877776643321 12477888899998887664
No 60
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=46.09 E-value=65 Score=24.99 Aligned_cols=58 Identities=19% Similarity=0.032 Sum_probs=43.9
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
...-+++++..+..+..+|..|..-....++.+-..++ ...+.++++.+++.|...+.
T Consensus 33 ~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (158)
T 2y3q_A 33 KNWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAK 99 (158)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 34557999999999999999999988877776643321 13467888888888887664
No 61
>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*
Probab=43.81 E-value=1.2e+02 Score=24.13 Aligned_cols=105 Identities=12% Similarity=-0.044 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFF 172 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f 172 (329)
+.+..++..++.+|..|++.+...+..++..|. ...+.. ...+.+....+-...-.|. ..
T Consensus 43 ~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-----~~~~~~--------------~~~~~~~~e~l~~al~~E~-~~ 102 (179)
T 1nfv_A 43 GELAANMKLIAIDEMRHAENFAERIKELGGEPT-----TQKEGK--------------VVTGQAVPVIYESDADQED-AT 102 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CCCSSC--------------CCCSCCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc-----CCCCCc--------------CCCCCCHHHHHHHHHHHHH-HH
Confidence 788999999999999999999988888865542 111100 1111111111111111222 11
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
...+.-+..++..-.=+.+..++.++..||..|......++..+.
T Consensus 103 ~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~l~ 147 (179)
T 1nfv_A 103 IEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIK 147 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333333444444589999999999999999988887776654
No 62
>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A*
Probab=43.52 E-value=1.4e+02 Score=24.86 Aligned_cols=144 Identities=14% Similarity=-0.091 Sum_probs=87.5
Q ss_pred HHhhcCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHH
Q 040427 86 FMTEVQVAEARAFYGFQIA----IENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERL 161 (329)
Q Consensus 86 ~~~~~~~~E~~~~~~~q~~----~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~l 161 (329)
.....++++...++..++. .|.-+-+ .+++.++.++++ .......|....-.+++.....+. ++...+
T Consensus 66 ~~~ka~~~~~~~~l~~~~~~~i~~E~~lh~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~l 137 (221)
T 2gm8_A 66 AASRAPSVDLMKTALELAYGTVTGEMANYE---ALLKEVGLSLRD----AAEAEPNRVNVSYMAYLKSTCALE-GFYQCM 137 (221)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHTHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhcC-CHHHHH
Confidence 4455677777666665443 2543333 346788777653 344556787777778877655432 467777
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHhcCC-CcchHHHHHHHH---hhh-hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Q 040427 162 IAFACVEGIFFSGSFCAIFWLKKRGL-MPGLTFSNELIS---RDE-GLHCDFACLLYSLLRTKLSEERVKALVKEAVEIE 236 (329)
Q Consensus 162 v~~~~lEgi~f~~~F~~~~~l~~~~~-l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E 236 (329)
+++..+|+++...|- .+..... .|+ .---+||. -+| .-|+.....++..+ +...+++.+++..+.+.|
T Consensus 138 aAl~pc~~~Y~~ig~----~l~~~~~~~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~f~~a~~lE 210 (221)
T 2gm8_A 138 AALLPCFWSYAEIAE----RHGGKLRENPV-HVYKKWASVYLSPEYRGLVERLRAVLDSS--GLSAEELWPYFKEASLYE 210 (221)
T ss_dssp HHHHHHHHHHHHHHH----HHGGGGGGCCC-HHHHHHHHHHHSHHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH----HHHhccCCCCC-chHHHHHHHhCCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 777778887654332 2222211 133 11234443 344 46777777766655 345678999999999999
Q ss_pred HHhhHhhc
Q 040427 237 REFVCDAL 244 (329)
Q Consensus 237 ~~~~~~~~ 244 (329)
..|-+...
T Consensus 211 ~~Fwd~a~ 218 (221)
T 2gm8_A 211 LEFWQAAY 218 (221)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 63
>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1
Probab=42.20 E-value=1.2e+02 Score=23.60 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=44.7
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
.+..-+++++..+.-+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 32 ~~~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~ 99 (161)
T 3gvy_A 32 QEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRIGQTLRETLDADLAAEHDART 99 (161)
T ss_dssp HHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345568999999999999999999988777766643332 13467888888888887664
No 64
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=41.24 E-value=1.3e+02 Score=23.76 Aligned_cols=105 Identities=16% Similarity=0.021 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFF 172 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f 172 (329)
+....++..|+.+|..|++.+...+..++..|. ...+...+ ...+....+-...-.|.- .
T Consensus 40 ~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~-----~~~i~~~~--------------~~~~~~e~l~~al~~E~~-~ 99 (174)
T 3qb9_A 40 TELAAHTRAESFDEMRHAEEITDRILLLDGLPN-----YQRIGSLR--------------IGQTLREQFEADLAIEYD-V 99 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCCCCC--------------CCSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-----ccCCCCCC--------------CCCCHHHHHHHHHHHHHH-H
Confidence 788889999999999999998888888865552 11111100 001111111111112221 1
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
...+--+..++....=++++..+.++.++|..|.......+..+.
T Consensus 100 ~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i~ 144 (174)
T 3qb9_A 100 LNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (174)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334455555689999999999999999998887776655
No 65
>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*
Probab=41.23 E-value=82 Score=25.04 Aligned_cols=57 Identities=16% Similarity=0.041 Sum_probs=43.0
Q ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccCC---------HHHHHHHHHHHHHHHHHhhH
Q 040427 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLS---------EERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 185 ~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~~---------~~~v~~~~~eav~~E~~~~~ 241 (329)
..-+++++..+..+..+|..|..-....+..+-..+. ...+.++++.+++.|...+.
T Consensus 36 ~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~~~~~~~e~l~~al~~E~~~~~ 101 (174)
T 3qb9_A 36 NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRIGQTLREQFEADLAIEYDVLN 101 (174)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4457999999999999999999988777766643321 13467888888888887654
No 66
>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*
Probab=41.09 E-value=1.4e+02 Score=23.96 Aligned_cols=59 Identities=10% Similarity=0.003 Sum_probs=43.5
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL--------SE--ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~v~~~~~eav~~E~~~~~ 241 (329)
+... -++|++..++....+|.-|..-...-++.+-..+ +. ..+.++++.+++.|+..+.
T Consensus 45 ~~~~-~~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~~~l~~i~~p~~~~~~~~e~le~~l~~E~~v~~ 113 (176)
T 1vlg_A 45 FDAE-GFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPPSNWNGIKDAFEAALKHEEFVTQ 113 (176)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4443 4899999999999999999997776666553222 11 3577888899998888664
No 67
>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}
Probab=40.54 E-value=60 Score=29.38 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc
Q 040427 177 CAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK 219 (329)
Q Consensus 177 ~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~ 219 (329)
...|++...+ ......|+-|+++|.+|....++++..+-..
T Consensus 31 ~a~ySi~~~n--~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~ 71 (317)
T 3hl1_A 31 TVLYSIKDPT--TVPYRLIQAAVYQEMLHAQLVSNIANAYGYS 71 (317)
T ss_dssp HHHHHBSCTT--SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHhcCCCcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344555443 5788999999999999999999999887543
No 68
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=39.84 E-value=53 Score=25.59 Aligned_cols=56 Identities=14% Similarity=0.004 Sum_probs=39.6
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHH--HhccCC----HHHHHHHHHHHHHHHHHh
Q 040427 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSL--LRTKLS----EERVKALVKEAVEIEREF 239 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~--l~~~~~----~~~v~~~~~eav~~E~~~ 239 (329)
+++--+++++..++..+.+|..|..-....+.. + ..|+ ...+.++++.+++.|..-
T Consensus 34 a~~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~l-g~p~~~~p~~~~~e~L~~al~~E~~~ 95 (144)
T 1j30_A 34 ADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGL-TDPATDKPIGTLEQMIESAIAGETYE 95 (144)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-BCTTTSCBCSSHHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CCCCcCCCCccHHHHHHHHHHhHHHH
Confidence 333447999999999999999999866665544 3 1111 134678888888888764
No 69
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=38.55 E-value=1.5e+02 Score=23.77 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=41.5
Q ss_pred HHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 040427 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL--------SE--ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 182 l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~v~~~~~eav~~E~~~~~ 241 (329)
+.. --+||+++-++..+.+|.-|..-....+..+-..+ .. ..+.++++.+.++|+.-+.
T Consensus 33 ~~~-~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg~~~l~~i~~p~~~~~~~~e~le~aL~~E~~v~~ 101 (173)
T 1s3q_A 33 FDS-IGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHVYEHEVNVTK 101 (173)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HhH-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 344 34899999999999999999986665554442222 11 3477888888888876553
No 70
>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1
Probab=37.71 E-value=1.5e+02 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.079 Sum_probs=29.4
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
..++..+++++++..+...+.+|..|.+.+..+++.+
T Consensus 125 ~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~l 161 (175)
T 2fzf_A 125 LKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELL 161 (175)
T ss_dssp HHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677788888888888888888888888887766
No 71
>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*
Probab=37.48 E-value=1.4e+02 Score=23.10 Aligned_cols=109 Identities=16% Similarity=0.017 Sum_probs=66.9
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 040427 89 EVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVE 168 (329)
Q Consensus 89 ~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lE 168 (329)
...-+....++-.|+..|.-|++.....+..++..|. ...+.. +....+....+-...-.|
T Consensus 36 ~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~-----~~~~~~--------------~~~~~~~~e~l~~~l~~E 96 (161)
T 3uoi_A 36 NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPN-----YQRIGS--------------LRIGQTLREQFEADLAIE 96 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCCC--------------CCCCSSHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-----CCCCCC--------------CCCCCCHHHHHHHHHHHH
Confidence 3344678888999999999999999888888876553 111110 111112211111111122
Q ss_pred HHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 169 GIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 169 gi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.- ....+.-+..++....=++++..+..|.+||..|..+....+..+.
T Consensus 97 ~~-~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i~ 144 (161)
T 3uoi_A 97 YD-VLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD 144 (161)
T ss_dssp HH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122333334455556699999999999999999999888777664
No 72
>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*
Probab=37.42 E-value=1.4e+02 Score=22.95 Aligned_cols=105 Identities=13% Similarity=-0.067 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHh
Q 040427 93 AEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFF 172 (329)
Q Consensus 93 ~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~lEgi~f 172 (329)
+....++-.++..|..|++.....+..++..|. ...+... ....+....+-...-.|.- .
T Consensus 38 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~-----~~~~~~~--------------~~~~~~~e~l~~~l~~E~~-~ 97 (158)
T 2y3q_A 38 KRLNDVEYHESIDEMKHADRYIERILFLEGLPN-----LQDLGKL--------------NIGEDVEEMLRSDLALELD-G 97 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSCCCCC--------------CCCSSHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-----CCCCCcC--------------CCCCCHHHHHHHHHHHHHH-H
Confidence 678888999999999999999888888865552 1111110 0011111111111112221 1
Q ss_pred HhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 173 ~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
...+.-+...+....=+.++..+..+..||..|......++..+.
T Consensus 98 ~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~l~ 142 (158)
T 2y3q_A 98 AKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ 142 (158)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334454445689999999999999999999888876664
No 73
>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*
Probab=37.23 E-value=1.5e+02 Score=23.23 Aligned_cols=110 Identities=10% Similarity=-0.080 Sum_probs=65.3
Q ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 88 TEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 88 ~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
....-+....++-.|+..|..|++.....+..++..|. +..+. -|. ...+.....+..+ -.
T Consensus 33 ~~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~-----~~~~~-~~~----------~~~~~~e~l~~~l---~~ 93 (159)
T 4am5_A 33 EDWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPN-----LQTLD-PLR----------IGQTVKEVLESDL---AA 93 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----CSBCC-CCC----------CCSSHHHHHHHHH---HH
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----ccccc-ccc----------cchhHHHHHHHHH---HH
Confidence 34445677888999999999999988887777776552 11110 000 0011111111111 11
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
|- .....+.-+..++....-+.++..+++|..||.-|......++..+.
T Consensus 94 E~-~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~i~ 142 (159)
T 4am5_A 94 ER-EARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS 142 (159)
T ss_dssp HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 01122333334566667799999999999999999998877776554
No 74
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=35.29 E-value=51 Score=29.11 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=33.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 84 GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 84 ~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
.+++..+.+|.++-.+.+-+..|.+|...|...++.+
T Consensus 156 ~rl~~~tdDp~vkd~L~fLi~RE~~H~~~f~~aLe~l 192 (266)
T 1o9i_A 156 SRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEEL 192 (266)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788899999999999999999999999999987
No 75
>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8
Probab=34.53 E-value=56 Score=26.09 Aligned_cols=65 Identities=14% Similarity=-0.130 Sum_probs=0.0
Q ss_pred hHHHHHHHHHh---cCCCcchHHHHHHHHhhhhhHHHHHHHHHHH--HhccCCHHH-------------------HHHHH
Q 040427 174 GSFCAIFWLKK---RGLMPGLTFSNELISRDEGLHCDFACLLYSL--LRTKLSEER-------------------VKALV 229 (329)
Q Consensus 174 ~~F~~~~~l~~---~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~--l~~~~~~~~-------------------v~~~~ 229 (329)
.+..+...+++ .-.-|.+.+++..++.||..|......++.. +...++.+. +.+++
T Consensus 19 ~~~~~Y~~lA~~~~~~~~~~~k~~f~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 98 (167)
T 2oh3_A 19 EAAERYVELADMMEAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHAL 98 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTSCCCCCCSSCC---CGGGSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccCCCcHhhhhHhhccccCCHHHHH
Q ss_pred HHHHHHHHH
Q 040427 230 KEAVEIERE 238 (329)
Q Consensus 230 ~eav~~E~~ 238 (329)
+-|+..|..
T Consensus 99 ~~A~~~E~~ 107 (167)
T 2oh3_A 99 RYARDNEIR 107 (167)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 76
>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3
Probab=33.85 E-value=2.1e+02 Score=23.89 Aligned_cols=139 Identities=13% Similarity=-0.097 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 92 VAEARAFYGFQIA----IENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 92 ~~E~~~~~~~q~~----~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+++...++..++. .|.-+-+ .+++.++.++++ .......|....-.+++.....+. ++...+++...+
T Consensus 65 ~~~~~~~l~~~~~~~i~~E~~lh~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~~-~~~~~laAl~pc 136 (226)
T 1udd_A 65 EYPLMAELIELARDEVTVEVENYV---KLLKELDLTLED----AIKTEPTLVNSAYMDFMLATAYKG-NIIEGLTALLPC 136 (226)
T ss_dssp CTTHHHHHHHHHHHHTTHHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 4555555544433 3643333 346788777653 334556788777778877655332 467777777778
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHH---hhh-hhHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhhHh
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRTK-LSEERVKALVKEAVEIEREFVCD 242 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~-~~~~~v~~~~~eav~~E~~~~~~ 242 (329)
|+++...|-...-.. .+ .|+ .---+||. -+| .-|+.....++..+ . ...+++.+++..+++.|..|-+.
T Consensus 137 ~~~Y~~ig~~l~~~~--~~-~~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~~~~~~~f~~a~~lE~~Fwd~ 210 (226)
T 1udd_A 137 FWSYAEIAEYHKDKL--RD-NPI-KIYREWGKVYLSNEYLNLVGRLRKIIDSS--GHSGYDRLRRIFITGSKFELAFWEM 210 (226)
T ss_dssp HHHHHHHHHHTHHHH--TT-CSC-HHHHHHHHGGGSHHHHHHHHHHHHHHHTS--CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CC-CCC-chHHHHHHHhCCHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888755543221111 12 244 22235554 233 45777777666655 3 34578999999999999999876
Q ss_pred hc
Q 040427 243 AL 244 (329)
Q Consensus 243 ~~ 244 (329)
..
T Consensus 211 a~ 212 (226)
T 1udd_A 211 AW 212 (226)
T ss_dssp HH
T ss_pred hh
Confidence 65
No 77
>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2}
Probab=33.56 E-value=2e+02 Score=23.69 Aligned_cols=133 Identities=9% Similarity=-0.044 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 040427 92 VAEARAFYGFQIA----IENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACV 167 (329)
Q Consensus 92 ~~E~~~~~~~q~~----~E~iH~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~~~~~~~~~~~lv~~~~l 167 (329)
+++...++..++. .|.-|-+ .+++.++.++++ .......|....-.+++.....+ ++...+++...+
T Consensus 67 ~~~~~~~~~~~~~~~i~~E~~~h~---~~~~~~Gi~~~~----~~~~~~~p~t~aY~~~l~~~a~~--~~~~~~aAl~pc 137 (214)
T 2qzc_A 67 PIDKVTKILNLVFSSRDKGLETHG---KLYSKLDISRDV----IVKTGYNLINYAYTRHLYYYANL--DWNKFLVAWTPC 137 (214)
T ss_dssp CHHHHHHHHHHHTCC--CHHHHHH---HHHHHTTCCHHH----HHHSCCCHHHHHHHHHHHHHHHH--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCCHHH----HhhCCCChHHHHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence 6666666655532 3643333 335778777653 34455678877778888776544 577777877778
Q ss_pred HHHHhHhHHHHHHHHHhcCCCcchHHHHHHHH---hhh-hhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhHhh
Q 040427 168 EGIFFSGSFCAIFWLKKRGLMPGLTFSNELIS---RDE-GLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243 (329)
Q Consensus 168 Egi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~---rDE-~~H~~~~~~l~~~l~~~~~~~~v~~~~~eav~~E~~~~~~~ 243 (329)
|+++...| -.+... |+ .---+||. -+| .-|+.....++..+ ....+ +.+++..+.+.|..|-+..
T Consensus 138 ~~~Y~~ig----~~l~~~---~~-~~y~~Wi~~y~~~~f~~~v~~~~~lld~~--~~~~~-~~~~f~~a~~~E~~Fwd~a 206 (214)
T 2qzc_A 138 MFGYSIVG----DYVIDS---PN-EVYKTWASFYASTEYKKRIEAILYALDEV--SITED-LLNIFINSVRFEIGFWDAS 206 (214)
T ss_dssp HHHHHHHH----HHHTTC---SC-HHHHHHHHHHHSHHHHHHHHHHHHHHTTS--CCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHhC---CC-ChHHHHHHHhCCHHHHHHHHHHHHHHHhC--ccHHH-HHHHHHHHHHHHHHHHHHH
Confidence 88865544 122222 44 22235553 244 46777777776655 33456 9999999999999998766
Q ss_pred c
Q 040427 244 L 244 (329)
Q Consensus 244 ~ 244 (329)
.
T Consensus 207 ~ 207 (214)
T 2qzc_A 207 L 207 (214)
T ss_dssp H
T ss_pred H
Confidence 5
No 78
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=31.74 E-value=72 Score=26.41 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=39.9
Q ss_pred HhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc------CC---HHHHHHHHHHHHHHH-HHhhH
Q 040427 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK------LS---EERVKALVKEAVEIE-REFVC 241 (329)
Q Consensus 183 ~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~------~~---~~~v~~~~~eav~~E-~~~~~ 241 (329)
+++--++|++..++..+..|..|.......+. -.. .| -..+.+.++.+++.| .++..
T Consensus 34 a~~~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~i~~~~p~~~~~s~~e~l~~al~~E~~e~t~ 100 (191)
T 1lko_A 34 AKKDGFVQISDIFAETADQEREHAKRLFKFLE--GGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTE 100 (191)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccCcCCccccCCHHHHHHHHHHhhHHHHHH
Confidence 45555899999999999999999975544432 111 01 135778888899988 66553
No 79
>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A
Probab=30.83 E-value=65 Score=28.97 Aligned_cols=70 Identities=20% Similarity=0.226 Sum_probs=48.4
Q ss_pred hCCCCCCccCccccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 040427 36 ASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSL 115 (329)
Q Consensus 36 ~~fW~p~eid~~~D~~~~~~L~~~Er~~~~~~l~~~~~~d~~v~~~l~~~~~~~~~~~E~~~~~~~q~~~E~iH~~sYs~ 115 (329)
.+-|++.-|.-+.|+..- +...+ .++.- .+..-.+++..+.+|.++-.+.+-+..|.+|...|..
T Consensus 130 G~pWta~Yv~~~Gdl~aD----------L~~Ni----aAE~~-Ar~~Y~rL~~~tdDp~vkd~L~fLi~RE~~H~~~f~~ 194 (302)
T 2v8t_A 130 GEHWNGEYVFTSGNLILD----------LLHNF----FLEVA-ARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGK 194 (302)
T ss_dssp SCBCBGGGCCCCSCHHHH----------HHHHH----HHHHH-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhcCCCCHHHH----------HHHHH----HHHHH-HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888777766421 11111 11111 1112245777888999999999999999999999999
Q ss_pred HHHHh
Q 040427 116 LLETY 120 (329)
Q Consensus 116 il~~~ 120 (329)
.++.+
T Consensus 195 ALe~l 199 (302)
T 2v8t_A 195 ALESL 199 (302)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99998
No 80
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Probab=27.87 E-value=2.5e+02 Score=22.99 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040427 68 LAFFAASDGIVLENLAGRFMT---EVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120 (329)
Q Consensus 68 l~~~~~~d~~v~~~l~~~~~~---~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~~ 120 (329)
|..=..++..-....-|.++. .-..+++...+...+..|..|.+.|..+++.+
T Consensus 120 L~~A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~~ia~~Ek~H~~ry~~ll~~l 175 (179)
T 3qhb_A 120 LETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENL 175 (179)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444554322222233444 44558898999999999999999999999876
No 81
>3bvf_A Ferritin; iron storage, metal-binding, oxidoreductase; 1.50A {Helicobacter pylori} PDB: 3bve_A 3bvi_A 3bvk_A 3bvl_A 3egm_A
Probab=26.18 E-value=2.6e+02 Score=22.52 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=43.2
Q ss_pred hcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhccC--------CH--HHHHHHHHHHHHHHHHhhH
Q 040427 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKL--------SE--ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 184 ~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~~--------~~--~~v~~~~~eav~~E~~~~~ 241 (329)
.+--+||++..++..+.+|.-|..-....+..+-.++ .. ..+.++++.+++.|+..+.
T Consensus 46 ~~~gl~~~a~~f~~~a~EE~~HA~~l~e~i~~lGG~p~l~~i~~p~~~~~~~~e~le~aL~~E~~~~~ 113 (181)
T 3bvf_A 46 YTHSLDGAGLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKAYEHEQHISE 113 (181)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999997766655543222 11 3478889999999988664
No 82
>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A
Probab=24.38 E-value=3.6e+02 Score=23.59 Aligned_cols=120 Identities=14% Similarity=0.055 Sum_probs=68.3
Q ss_pred cCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhcHHHHHHH------HHHH-------------
Q 040427 90 VQVAEA-RAFYGFQIAIENIHSEMYSLLLETYIKD-SDEKNRLFHAIETVPCVAKKA------TWAL------------- 148 (329)
Q Consensus 90 ~~~~E~-~~~~~~q~~~E~iH~~sYs~il~~~~~d-~~e~~~~~~~~~~~p~l~~k~------~~~~------------- 148 (329)
++.++. +..+.-.+.+|--|.+..+.++..+..+ +.+..+. ..+|.+.+-. -++.
T Consensus 49 ~~~~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a----~~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~ 124 (266)
T 1o9i_A 49 STGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDL----KRDPSLATTMAGMDPEHSLVHGLNASLNNPNGA 124 (266)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHH----HHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCC
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhc----ccchhhHhhhcCCChHHHHhcCCCCCccCCCCC
Confidence 344677 7788888899999999999999999643 2112111 1133221111 0221
Q ss_pred ----HhhcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q 040427 149 ----NWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR 217 (329)
Q Consensus 149 ----~~~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~ 217 (329)
.++...-+...-+......|.-. -..+.-++.+.. =|++.+++.+|..||..|..-....++.+.
T Consensus 125 pWt~~yv~~~Gdl~aDL~~niaaE~~A-r~~Y~rl~~~td---Dp~vkd~L~fLi~RE~~H~~~f~~aLe~l~ 193 (266)
T 1o9i_A 125 AWNAGYVTSSGNLVADMRFNVVRESEA-RLQVSRLYSMTE---DEGVRDMLKFLLARETQHQLQFMKAQEELE 193 (266)
T ss_dssp BCBGGGCCCCSCHHHHHHHHHHHHHHH-HHHHHHHHTTCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111112333333344455321 112222322322 389999999999999999998887777664
No 83
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=24.15 E-value=82 Score=25.25 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=41.8
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHH
Q 040427 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRTKL----SEERVKALVKEAVEIERE 238 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~----~~~~v~~~~~eav~~E~~ 238 (329)
.-|+++|.-|. .|..|.||+. .....|..+.+.|...- =+|..+.+++.||.+-+-
T Consensus 40 ~klakkG~tpS---qIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lRkH 103 (153)
T 2xzm_O 40 VKLAKKGLTPS---QIGVILRDQHGIPQVRFLTGQKILRILKKNGCAPQLPEDLYFLIKKALSIRKH 103 (153)
T ss_dssp HHHHHTTCCHH---HHHHHHHHSSCCSCHHHHHSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHH---HhhhHHhhcCCCCCeeeeccchHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 35788998887 8899999993 55556677777776431 168899999999986553
No 84
>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A*
Probab=23.08 E-value=3.2e+02 Score=22.50 Aligned_cols=124 Identities=11% Similarity=0.031 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHhhhcHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHhHhHHHHHHHHHhcCCC
Q 040427 110 SEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNW-IDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLM 188 (329)
Q Consensus 110 ~~sYs~il~~~~~d~~e~~~~~~~~~~~p~l~~k~~~~~~~-~~~~~~~~~~lv~~~~lEgi~f~~~F~~~~~l~~~~~l 188 (329)
...+..+++.++.++ ....-.|....-.+++... ..+ .++...++++..+|.++...|=...-.. ..+
T Consensus 89 ~~~h~~~~~~~Gi~~-------~~~~~~p~~~aY~~~l~~~~~~~-~~~~~~~aAl~pc~~~Y~~i~~~l~~~~-~~~-- 157 (221)
T 2f2g_A 89 IEWFKREGSKWDVDF-------STVVPQRANQEYGRFLEDLMSSE-VKYPVIMTAFWAIEAVYQESFAHCLEDG-NKT-- 157 (221)
T ss_dssp HHHHHHHHHHTTCCG-------GGCCCCHHHHHHHHHHHHTTSTT-SCHHHHHHHHHHHHHHHHHHTTTHHHHH-HTS--
T ss_pred HHHHHHHHHHcCCCh-------hhcCCCHHHHHHHHHHHHhhccC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCC--
Confidence 334445567776654 2345567788888888877 443 3577888888778888655442221100 111
Q ss_pred cc-hHHHHHHHHhhh-hhHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHhhHhhc
Q 040427 189 PG-LTFSNELISRDE-GLHCDFACLLYSLLRTKLSE---ERVKALVKEAVEIEREFVCDAL 244 (329)
Q Consensus 189 ~g-~~~~i~~I~rDE-~~H~~~~~~l~~~l~~~~~~---~~v~~~~~eav~~E~~~~~~~~ 244 (329)
|+ ..+=|+.=.-+| .-|+.....++..+....++ +++.+++..+.+.|..|-+...
T Consensus 158 ~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~~~~~~~~~~f~~a~~lE~~Fwd~a~ 218 (221)
T 2f2g_A 158 PVELTGACHRWGNDGFKQYCSSVKNIAERCLENASGEVLGEAEDVLVRVLELEVAFWEMSR 218 (221)
T ss_dssp SSCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 222233223355 58999999999988766664 4578999999999999987654
No 85
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=21.16 E-value=82 Score=25.21 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=41.7
Q ss_pred HHHHhcCCCcchHHHHHHHHhhhh----hHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHH
Q 040427 180 FWLKKRGLMPGLTFSNELISRDEG----LHCDFACLLYSLLRTKL----SEERVKALVKEAVEIERE 238 (329)
Q Consensus 180 ~~l~~~~~l~g~~~~i~~I~rDE~----~H~~~~~~l~~~l~~~~----~~~~v~~~~~eav~~E~~ 238 (329)
.-|+++|.-|. .|..|.||+. .....|..+.+.|...- =+|..+.+++.||.+-+-
T Consensus 38 ~klakkG~tpS---qIG~iLRD~~GIp~Vk~vtG~kI~rILk~~glapeiPEDL~~LikKAv~lrkH 101 (151)
T 3u5c_N 38 VKYARKGLTPS---QIGVLLRDAHGVTQARVITGNKIMRILKSNGLAPEIPEDLYYLIKKAVSVRKH 101 (151)
T ss_dssp HHHHTTTCCHH---HHHHHHHHHTTCSCHHHHSSSCHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHH---HhhhHHhccCCCCCeeeecccHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 35788998887 8899999994 45555667777776431 168899999999986653
No 86
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=20.63 E-value=3.2e+02 Score=21.71 Aligned_cols=61 Identities=7% Similarity=0.025 Sum_probs=43.8
Q ss_pred HHHhc-CCCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc--------C-CH--HHHHHHHHHHHHHHHHhhH
Q 040427 181 WLKKR-GLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK--------L-SE--ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 181 ~l~~~-~~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~-~~--~~v~~~~~eav~~E~~~~~ 241 (329)
++.+. --+||+++-++.-+.+|.-|..-...-+..+-.. + .. ..+.++++.+.++|+.-+.
T Consensus 37 ~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~i~~p~~~~~~~~~e~le~aL~~E~~v~~ 109 (173)
T 1rcd_A 37 YFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQ 109 (173)
T ss_dssp HHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCCCCSCSCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCccccCCHHHHHHHHHHHHHHHHH
Confidence 34443 3699999999999999999998666555444222 2 11 3578899999999987664
No 87
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Probab=20.34 E-value=3.8e+02 Score=22.33 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=43.6
Q ss_pred HHHhcC-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHhcc--------CCH-------HHHHHHHHHHHHHHHHhhH
Q 040427 181 WLKKRG-LMPGLTFSNELISRDEGLHCDFACLLYSLLRTK--------LSE-------ERVKALVKEAVEIEREFVC 241 (329)
Q Consensus 181 ~l~~~~-~l~g~~~~i~~I~rDE~~H~~~~~~l~~~l~~~--------~~~-------~~v~~~~~eav~~E~~~~~ 241 (329)
++.+.+ -+||+++-++.-+.+|.-|..-....+..+-.. +.. ..+.++++.+.++|+.-+.
T Consensus 69 ~f~~~~v~l~g~a~~f~~~s~EE~~HA~kl~~yi~~rGG~~~l~~i~~p~~~~~~~e~~~~~e~le~aL~~Ek~v~~ 145 (212)
T 3a68_A 69 YFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNE 145 (212)
T ss_dssp HHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCBCCCCCCCCCTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCcCCCCCCcCCcccCCHHHHHHHHHHHHHHHHH
Confidence 444443 699999999999999999998666555444221 211 2578899999999987664
No 88
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis}
Probab=20.11 E-value=3.5e+02 Score=24.51 Aligned_cols=109 Identities=8% Similarity=0.015 Sum_probs=60.3
Q ss_pred hHHHHHHHH-HHHHHHHhHhHHHHHHHHHhcCCCcchHHHHHHHHhhhh-hHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 040427 156 TFAERLIAF-ACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEG-LHCDFACLLYSLLRTKLSEERVKALVKEAV 233 (329)
Q Consensus 156 ~~~~~lv~~-~~lEgi~f~~~F~~~~~l~~~~~l~g~~~~i~~I~rDE~-~H~~~~~~l~~~l~~~~~~~~v~~~~~eav 233 (329)
.+..+++++ +.++++.--.+-..+... =.-|.........+--|+ +|......++..+.. +++..+++..+.
T Consensus 74 ~~~~~vl~f~~~~Dsiv~~~~~~~~~~~---v~~pE~~~~~~~q~~~E~aiHs~sYs~il~tl~~---~~e~~~~f~~~~ 147 (350)
T 4dr0_A 74 DTYMKVLAGLTLLDTEQGNTGMPIVAEH---VDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAP---TETINEVFEWVK 147 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHH---SCSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSC---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHh---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---chhHHHHHHHHh
Confidence 356666665 578888753333223211 223666677778888999 999999999999972 333444443322
Q ss_pred -----HHHHHhhHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Q 040427 234 -----EIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGY 273 (329)
Q Consensus 234 -----~~E~~~~~~~~~~~~~Gl~~~~~~~yi~y~an~~l~~lG~ 273 (329)
..-.+|+...+.. ...-++ -.-+.+.+|..+++.+-+
T Consensus 148 ~~p~l~~Ka~~i~~~y~~-~~~~~~--~~~~~~lva~~~lEGi~F 189 (350)
T 4dr0_A 148 QNKYLQKKAQMIVGLYKA-IQKDDE--ISLFKAMVASVYLESFLF 189 (350)
T ss_dssp HCHHHHHHHHHHHHHHHT-CCTTCH--HHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHHHh-ccCcch--HHHHHHHHHHHHHHHHHH
Confidence 2223455433311 111111 123334556777777643
Done!