RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 040427
(329 letters)
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase,
ribonucleotide reductase, dinuclear metal-cluster; 2.2A
{Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A
1xsm_A 2uw2_A 3hf1_A 2vux_A
Length = 390
Score = 524 bits (1352), Expect = 0.0
Identities = 225/329 (68%), Positives = 266/329 (80%), Gaps = 5/329 (1%)
Query: 2 PSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEK 61
PS+ +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWEAL DE+
Sbjct: 66 PSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDER 125
Query: 62 HFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYI 121
HF++HVLAFFAASDGIV ENL RF EVQV EAR FYGFQIA+ENIHSEMYSLL++TYI
Sbjct: 126 HFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYI 185
Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIF 180
KD E+ LF+AIET+PCV KKA WAL WI E T+ ER++AFA VEGIFFSGSF +IF
Sbjct: 186 KDPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIF 245
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
WLKKRGLMPGLTFSNELISRDEGLHCDFACL++ L K +E+RV+ ++ AV IE+EF+
Sbjct: 246 WLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFL 305
Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEK 300
+ALP L+GMN LM QYIEFVADRL+ LG+ K++ V NPFD+ME ISL+GKTNFFEK
Sbjct: 306 TEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEK 365
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
RVGEYQ+ VMS N + F +D DF
Sbjct: 366 RVGEYQRMGVMS----NSTENSFTLDADF 390
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
PY03671, S genomics consortium, SGC, oxidoreductase;
2.70A {Plasmodium yoelii yoelii}
Length = 349
Score = 522 bits (1347), Expect = 0.0
Identities = 204/329 (62%), Positives = 249/329 (75%), Gaps = 4/329 (1%)
Query: 1 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADE 60
E +L +RF + PI YP++W YKKAEASFWTAEE+DLS DL+ +E L +E
Sbjct: 25 KSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNE 84
Query: 61 KHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120
KHF+ HVLAFFAASDGIVLENLA +F+ EV++ EA+ FY FQIA+ENIHSE YSLL++ Y
Sbjct: 85 KHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNY 144
Query: 121 IKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIF 180
IKD E+ LFHAIE +P + KA WA WI+ + +FAER++A ACVEGI FSGSFCAIF
Sbjct: 145 IKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIF 204
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
W KK+ + GLTFSNELISRDEGLH DF CL+YSLL KL E V+ +VKEAVE+ER F+
Sbjct: 205 WFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFI 264
Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEK 300
C++LPC L+GMN LMSQYIEFVADRLL LG K++ NPF+WM+LISLQGKTNFFEK
Sbjct: 265 CESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEK 324
Query: 301 RVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
RV +YQK+ VM+ VF ++ DF
Sbjct: 325 RVADYQKSGVMA----QRKEQVFSLNTDF 349
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 509 bits (1313), Expect = 0.0
Identities = 201/326 (61%), Positives = 246/326 (75%), Gaps = 3/326 (0%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFV 64
EEPLL + +R +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+ W + +E+ F+
Sbjct: 95 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 154
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
+ VLAFFAASDGIV ENL F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD
Sbjct: 155 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 214
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF+AI T+P + +KA WAL WI ++ F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 215 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 274
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+ K V+ +V EAVEIE+ + DA
Sbjct: 275 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 334
Query: 244 LPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVG 303
LP AL+GMN +LM+QY+EFVADRLL A G K Y V NPFD+ME ISL GKTNFFEKRV
Sbjct: 335 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVS 394
Query: 304 EYQKASVMSSLNGNGGNHVFKIDEDF 329
+YQKA VMS F +EDF
Sbjct: 395 DYQKAGVMSKSTKQEA-GAFTFNEDF 419
>4a58_A Ribonucleoside-diphosphate reductase small chain; oxidoreductase,
epstein-BARR virus, R2 subunit; 1.68A {Human herpesvirus
4} PDB: 4a5c_A 4a5d_A 4a5e_A 4a5f_A 4a5h_A 4a5i_A 4a5j_A
Length = 324
Score = 504 bits (1301), Expect = 0.0
Identities = 84/312 (26%), Positives = 143/312 (45%), Gaps = 8/312 (2%)
Query: 5 PEEPLLAPNPD-RFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHF 63
++ + + + + W A + L++D + L + F
Sbjct: 12 STSLYKKAGSAMSKLLYVRDHEGFACLTVETHRNRWFAAHIVLTKDCGCLKLLNERDLEF 71
Query: 64 VTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD 123
+ F A ++ +V N+ +T + + +Y Q A+EN+H E Y+ +L
Sbjct: 72 YKFLFTFLAMAEKLVNFNID-ELVTSFESHDIDHYYTEQKAMENVHGETYANILNMLFDG 130
Query: 124 SDE-KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWL 182
N AI T + K +W + + + T E+++ F +EGIFF SF +I L
Sbjct: 131 DRAAMNAYAEAIMTDEALQAKISWLRDKVAAAVTLPEKILVFLLIEGIFFISSFYSIALL 190
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTK---LSEERVKALVKEAVEIEREF 239
+ RGLMPG+ +N ISRDE LH A LLY+ + K ++ L + AVE+E F
Sbjct: 191 RVRGLMPGICLANNYISRDELLHTRAASLLYNSMTAKADRPRATWIQELFRTAVEVETAF 250
Query: 240 VCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDW-MELISLQGKTNFF 298
+ +A + ++ + Q++E ADR+LG +G LYG P D + ++ +TNFF
Sbjct: 251 I-EARGEGVTLVDVRAIKQFLEATADRILGDIGQAPLYGTPPPKDCPLTYMTSIKQTNFF 309
Query: 299 EKRVGEYQKASV 310
E+ +Y V
Sbjct: 310 EQESSDYTMLVV 321
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A
Length = 345
Score = 502 bits (1293), Expect = e-180
Identities = 143/325 (44%), Positives = 210/325 (64%), Gaps = 4/325 (1%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
+E LL N RF MFPI+Y +IW YKK EASFWTAEE++L++D ++ LT D+K ++
Sbjct: 24 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIG 83
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
++LA +SD +V + L F ++Q E ++FYGFQI +ENI+SE+YS++++ + KD
Sbjct: 84 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPK 143
Query: 126 EKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFWLKK 184
LF I +P V KA + WI + +AERL+AFA EGIF +G++ ++FWL
Sbjct: 144 NIP-LFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTD 202
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
+ +MPGL +N I RD G + DF+CLL++ LRTK + + ++ ++ EAVEIE+E+ ++L
Sbjct: 203 KKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSL 262
Query: 245 PCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMELISLQGKTNFFEKRVGE 304
P GM+ + + YIEFVAD LL G K Y NPF++ME ++ GKT FFEK+V +
Sbjct: 263 PVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSD 322
Query: 305 YQKASVMSSLNGNGGNHVFKIDEDF 329
YQKAS MS + D+DF
Sbjct: 323 YQKASDMS--KSATPSKEINFDDDF 345
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune EVAS
replication, oxidoreductase; 1.70A {Chlamydia
trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Length = 346
Score = 480 bits (1237), Expect = e-172
Identities = 88/328 (26%), Positives = 152/328 (46%), Gaps = 27/328 (8%)
Query: 9 LLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTH 66
+ D + PI+Y WE Y A+ W E+ + +D+ W++ L+ DE+ +
Sbjct: 21 VNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILL 80
Query: 67 VLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126
L FF+ ++ +V N+ V EAR + Q E +H+ + + E+ D E
Sbjct: 81 NLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE 140
Query: 127 KNRLFHAIETVPCVAKKATWALNWI-------------DGSETFAERLIAF-ACVEGIFF 172
+F+A + K + + +G + F + L+ + +EGIFF
Sbjct: 141 ---IFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFF 197
Query: 173 SGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLR-------TKLSEERV 225
F I ++ M G+ + I RDE +H +F L + ++ T ++ +
Sbjct: 198 YSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEI 257
Query: 226 KALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDW 285
L+K AV++E E+ D LP ++G+ + Y++ +ADR L +G +Y NPF W
Sbjct: 258 VELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPW 317
Query: 286 M-ELISLQGKTNFFEKRVGEYQKASVMS 312
M E I L + NFFE RV EYQ A+ ++
Sbjct: 318 MSETIDLNKEKNFFETRVIEYQHAASLT 345
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
reductase, oxidoreductase, DNA replication, iron,
DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Length = 311
Score = 471 bits (1215), Expect = e-169
Identities = 183/288 (63%), Positives = 224/288 (77%)
Query: 1 MPSIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADE 60
E +L+ DRF ++PI YP +W+ YKKAEASFWTAEE+DLS DL+ +E L +E
Sbjct: 24 KSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNE 83
Query: 61 KHFVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETY 120
KHF+ HVLAFFAASDGIVLENLA +F+ +V++ EA+ FY FQIA+ENIHSE YSLL++ Y
Sbjct: 84 KHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNY 143
Query: 121 IKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIF 180
IKD E+ LFHAIE +P V KA WA WI+ + +FAER++A ACVEGI FSGSFCAIF
Sbjct: 144 IKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIF 203
Query: 181 WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFV 240
W KK+ + GLTFSNELISRDEGLH DF CL+YSLL KL EE V+ +VKEAVE+ER F+
Sbjct: 204 WFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFI 263
Query: 241 CDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMEL 288
C++LPC L+GMN LMSQYIEFVADRLL LG K++ NPF+WM+L
Sbjct: 264 CESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDL 311
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding,
HRRM2, oxidoreductase; 2.10A {Homo sapiens}
Length = 286
Score = 455 bits (1171), Expect = e-163
Identities = 195/285 (68%), Positives = 234/285 (82%), Gaps = 1/285 (0%)
Query: 3 SIPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKH 62
+ +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWE+L +E++
Sbjct: 2 GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERY 61
Query: 63 FVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIK 122
F++HVLAFFAASDGIV ENL RF EVQ+ EAR FYGFQIA+ENIHSEMYSLL++TYIK
Sbjct: 62 FISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK 121
Query: 123 DSDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFW 181
D E+ LF+AIET+PCV KKA WAL WI E T+ ER++AFA VEGIFFSGSF +IFW
Sbjct: 122 DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFW 181
Query: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVC 241
LKKRGLMPGLTFSNELISRDEGLHCDFACL++ L K SEERV+ ++ AV IE+EF+
Sbjct: 182 LKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLT 241
Query: 242 DALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWM 286
+ALP L+GMN LM QYIEFVADRL+ LG+ K++ V NPFD+M
Sbjct: 242 EALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM 286
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide
reductase, manganese, oxidoreductase; 1.90A {Bacillus
subtilis}
Length = 350
Score = 404 bits (1040), Expect = e-142
Identities = 71/341 (20%), Positives = 133/341 (39%), Gaps = 29/341 (8%)
Query: 4 IPEEPLLAPNPDRFCMF-PIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKH 62
+P + + + Y + FW EE+ L+ DL W+ L +E+
Sbjct: 15 VPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQD 74
Query: 63 FVTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIEN-IHSEMYSLLLETYI 121
VLA D V + +A F +EN +H++ YS + T
Sbjct: 75 TYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLA 134
Query: 122 KDSDEKNRLFHAIETVPCVAKKATWALNWIDG-----SETFAERLIAFACVEGI-FFSGS 175
+ N +F ++ + KKA + + + ++A +E F+SG
Sbjct: 135 PT-ETINEVFEWVKQNKYLQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLESFLFYSGF 193
Query: 176 FCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEI 235
+ +++ + LM N LI RDE +H + LL + K +EE+ L + A+++
Sbjct: 194 YYPLYFYGQGKLMQSGEIIN-LILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREFAIDL 252
Query: 236 EREFVCDALPCA-----LVGMNGELMSQYIEFVADRLLGALGYGKLYGVA--NPFDWMEL 288
+ + L VG++ + + ++I + A++ L LG+ + NP L
Sbjct: 253 LNQLYENELEYTEDLYDQVGLSHD-VKKFIRYNANKALMNLGFDPYFEEEDINPIVLNGL 311
Query: 289 ISLQGKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
+ +FF + Y+KA+V D+DF
Sbjct: 312 NTKTKSHDFFSMKGNGYKKATVEPLK-----------DDDF 341
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, C monooxygenase;
HET: MYR; 1.90A {Mycobacterium tuberculosis}
Length = 323
Score = 355 bits (913), Expect = e-123
Identities = 47/325 (14%), Positives = 103/325 (31%), Gaps = 34/325 (10%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
LA + P +++ A FW ++D ++D WE L+ DE+ + T
Sbjct: 14 RSGSLAAGGLNWASLP------LKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYAT 67
Query: 66 HVLAFFAASDGIVLENLA--GRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD 123
+ F A + V E++ M + E H++++ + L+
Sbjct: 68 RLCTQFIAGEEAVTEDIQPFMSAMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGIS 127
Query: 124 SDEKNRLFHAIETVPCVAKKATWALNW-------IDGSETFAERLIAF-ACVEGIFFSGS 175
D L ++ +P + L + + VEG+
Sbjct: 128 ED----LHRYLDDLPAYRQIFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTG 183
Query: 176 FCAIF-WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRT------KLSEERVKAL 228
+ A +R ++PG+ I DE H + + E R+ L
Sbjct: 184 YYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNEL 243
Query: 229 VKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWMEL 288
+ A+ + E ++ ++++ D+ + G A +
Sbjct: 244 IPLALRLIEEGFALYGDQPPFDLS---KDDFLQYSTDKGMRRFGT---ISNARGRP-VAE 296
Query: 289 ISLQGKTNFFEKRVGEYQKASVMSS 313
I + E + + ++ ++
Sbjct: 297 IDVDYSPAQLEDTFADEDRRTLAAA 321
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide
reductase, four-helix bundle, dimanganese CLU
oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A
3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A
Length = 319
Score = 350 bits (900), Expect = e-121
Identities = 61/321 (19%), Positives = 111/321 (34%), Gaps = 28/321 (8%)
Query: 21 PIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLE 80
I + E++ + ++FW E+V LS D+ W+ LT E+ V D +
Sbjct: 13 KISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNV 72
Query: 81 NLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCV 140
A M + A +E +H+ YS + T + + + + E +
Sbjct: 73 IGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLC-QTKDVDAAYAWSEENAPL 131
Query: 141 AKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISR 200
+KA G + ++ IA +E F F + RG + LI R
Sbjct: 132 QRKAQIIQQHYRG-DDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIR 190
Query: 201 DEGLHCDFACLLYSLLRTKLSEER-------VKALVKEAVEIEREFVCDALPCALVGMNG 253
DE +H + Y K+S + L+ E + E ++ +
Sbjct: 191 DEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLLLELYDNELQYTDELYAE---TPWA 247
Query: 254 ELMSQYIEFVADRLLGALGYGKLYGVA----NPFDWMEL-ISLQGKTNFFEKRVGEYQKA 308
+ + ++ + A++ L LGY L+ NP L + +FF Y
Sbjct: 248 DDVKAFLCYNANKALMNLGYEPLFPAEMAEVNPAILAALSPNADENHDFFSGSGSSYVMG 307
Query: 309 SVMSSLNGNGGNHVFKIDEDF 329
+ + DED+
Sbjct: 308 KAVETE-----------DEDW 317
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond,
metal binding protein; 1.63A {Corynebacterium
ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A
1kgn_A
Length = 329
Score = 340 bits (875), Expect = e-117
Identities = 66/337 (19%), Positives = 125/337 (37%), Gaps = 33/337 (9%)
Query: 5 PEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+P+ A N + I + E++ + +FW E++ +S D++ W +T E+
Sbjct: 12 HTDPVKAINWNV-----IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLAT 66
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
V D I A + + + A Y +E++H++ YS + T
Sbjct: 67 MRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST- 125
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
+ N F E + +KA +++ +G + ++ +A +E F F +L
Sbjct: 126 PQINEAFRWSEENENLQRKAKIIMSYYNG-DDPLKKKVASTLLESFLFYSGFYLPMYLSS 184
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEER-------VKALVKEAVEIER 237
R + LI RDE +H + Y KLSE L+ + E E
Sbjct: 185 RAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEI 244
Query: 238 EFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVA----NPFDWMEL-ISLQ 292
E+ D +G + + +++ + A++ L LGY L+ +P L +
Sbjct: 245 EYTEDIYDD--LGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAILSSLSPNAD 301
Query: 293 GKTNFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
+FF Y + D+D+
Sbjct: 302 ENHDFFSGSGSSYVIGKAEDT-----------TDDDW 327
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron,
oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2
PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A
2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A
1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ...
Length = 375
Score = 338 bits (869), Expect = e-115
Identities = 74/358 (20%), Positives = 139/358 (38%), Gaps = 49/358 (13%)
Query: 6 EEPLLAPNPDRFCMF-PIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + +Y ++ +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWID------------------------------GS 154
+F I T + K+A ++ D
Sbjct: 134 SV---VFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 155 ETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
+ L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLR-----------TKLSEERVKALVKEAVEIEREFVCDALP-CALVGMNGELMSQYIEF 262
LLR + ++ L +A + E+++ +++G+N +++ QY+E+
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEY 310
Query: 263 VADRLLGALGYGKLY-GVANPFDWME--LISLQGKTNFFEKRVGEYQKASVMSSLNGN 317
+ + + A+G + +NP W+ L+S + E V Y + S ++ +
Sbjct: 311 ITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTD 368
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1,
putative class I ribonucleotide reductase,
ribonucleotide reductase; HET: MSE PGE PG4; 1.90A
{Bacillus halodurans c-125}
Length = 346
Score = 335 bits (860), Expect = e-115
Identities = 66/310 (21%), Positives = 135/310 (43%), Gaps = 19/310 (6%)
Query: 21 PIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLE 80
+++ + +YK A+FWT E+++S D + + LT E+ ++ A D +
Sbjct: 35 DVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQ-T 93
Query: 81 NLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCV 140
+ + R + + A E +H++ YS +L + + + + + +F + +
Sbjct: 94 DYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDVL 152
Query: 141 AKKATWALNWIDG------SETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFS 194
++ + ++ + +TF E ++ +EG+ F F + L + M +
Sbjct: 153 KERNEFIIDGYEKFVDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTM 212
Query: 195 NELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIEREFVCDALPCA 247
I+RDE LH ++ L + E VK + +A ++E+++ +
Sbjct: 213 INYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDK 272
Query: 248 LVGMNGELMSQYIEFVADRLLGALGYGKLYGVA--NPFDWMELIS--LQGKTNFFEKRVG 303
+ G+N E M YI F+A++ LG K Y NP W+ GK++FFE++
Sbjct: 273 IPGINPEDMETYISFIANKRAVQLGMEKPYPEIKHNPMKWIRAYEDVNSGKSDFFEQKSR 332
Query: 304 EYQKASVMSS 313
+Y K S +
Sbjct: 333 QYAKVSADNG 342
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase,
RNR, radical enzyme, split SIGN metallocofactor; 1.36A
{Corynebacterium ammoniagenes} PDB: 1uzr_A*
Length = 296
Score = 299 bits (768), Expect = e-101
Identities = 59/292 (20%), Positives = 113/292 (38%), Gaps = 19/292 (6%)
Query: 5 PEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+P+ A N + I + E++ + +FW E++ +S D++ W +T E+
Sbjct: 11 HTDPVKAINWNV-----IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLAT 65
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
V D I A + + + A Y +E++H++ YS + T
Sbjct: 66 MRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST- 124
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
+ N F E + +KA +++ +G + ++ +A +E F F +L
Sbjct: 125 PQINEAFRWSEENENLQRKAKIIMSYYNG-DDPLKKKVASTLLESFLFYSGFYLPMYLSS 183
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEER-------VKALVKEAVEIER 237
R + LI RDE +H + Y KLSE L+ + E E
Sbjct: 184 RAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEI 243
Query: 238 EFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVA--NPFDWME 287
E+ D +G + + +++ + A++ L LGY L+ +
Sbjct: 244 EYTEDIYDD--LGWTED-VKRFLRYNANKALNNLGYEGLFPTDETKVSPAIL 292
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-08
Identities = 54/292 (18%), Positives = 95/292 (32%), Gaps = 95/292 (32%)
Query: 29 EMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAF-FAASDGIVLEN---LAG 84
++YK ++A A++V W AD HF + F+ D IV+ N L
Sbjct: 1634 DLYKTSKA----AQDV--------WNR--AD-NHFKD---TYGFSILD-IVINNPVNLTI 1674
Query: 85 RF--------------MTEVQVAEARAFYG--FQIAIENIHSEMYS----LLLETYIKDS 124
F M + + + F+ E+ S + LL T
Sbjct: 1675 HFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF--- 1731
Query: 125 DEKNRLFHAIETVPC--VAKKATWAL--NW--IDGSETFA-----ERLIAFACVEGIFFS 173
T P + +KA + + I TFA E A A + +
Sbjct: 1732 -----------TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE-YAALASLADVM-- 1777
Query: 174 GSF-CAIFWLKKRGLMPGLTFSNELISRDEGLHCDFAC--LLYSLLRTKLSEERVKALVK 230
S + + RG+ + RDE ++ + + S+E ++ +V+
Sbjct: 1778 -SIESLVEVVFYRGM-----TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 231 EAVEIEREFVCDALPCALVGMN--GELMSQYI---EFVA-DRLLGALGYGKL 276
+ V +V N + QY+ + A D + L + KL
Sbjct: 1832 RVGKRTGWLVE------IVNYNVENQ---QYVAAGDLRALDTVTNVLNFIKL 1874
Score = 53.1 bits (127), Expect = 8e-08
Identities = 59/361 (16%), Positives = 106/361 (29%), Gaps = 128/361 (35%)
Query: 2 PSIPEEPLLAPNPDRFCMF------PIQYPQIWEMYKKA----EASFWTAEEV-DLSQDL 50
P+ P E L+ +F + P + Q ++ E + ++ L+ L
Sbjct: 54 PTTPAE-LVG----KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL 108
Query: 51 RHWEALTADEKHFVTHVLAFFAASDGIVLENLAGR---------FMTEVQVAEARAFYGF 101
T + + + + A +A R V A+ F
Sbjct: 109 LQENDTTLVKTKEL--IKNYITAR------IMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 102 --QIAIENIHSEM------YSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALN---W 150
Q ++ E+ Y +L+ IK S E L I T K T LN W
Sbjct: 161 GGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQGLNILEW 218
Query: 151 IDGSETFAER--------------LIAFA-------------------------CVEGI- 170
++ ++ +I A +G+
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 171 -------------FFSGSFCAI---FWLKKRGL--MPGLTFSNELIS----RDEGLHCDF 208
FF AI F++ R P + ++ +EG+
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV---- 334
Query: 209 ACLLYSLLRTKLSEERVKALVK---------EAVEI-----EREFVCDALPCALVGMNGE 254
+ S+ + L++E+V+ V + VEI + V P +L G+N
Sbjct: 335 PSPMLSI--SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLT 392
Query: 255 L 255
L
Sbjct: 393 L 393
Score = 39.3 bits (91), Expect = 0.002
Identities = 29/134 (21%), Positives = 37/134 (27%), Gaps = 58/134 (43%)
Query: 8 PLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLS---------QDLR------- 51
LL P D I + K SF D+ DLR
Sbjct: 430 HLLVPASD----------LINKDLVKNNVSFNAK---DIQIPVYDTFDGSDLRVLSGSIS 476
Query: 52 ------------HWEALTADEKHFVTHVLAFFA-ASDGI---VLENLAGRFMTEVQVAEA 95
WE T + TH+L F + G+ N G T V+V A
Sbjct: 477 ERIVDCIIRLPVKWETTTQFK---ATHILDFGPGGASGLGVLTHRNKDG---TGVRVIVA 530
Query: 96 RAF-------YGFQ 102
YGF+
Sbjct: 531 GTLDINPDDDYGFK 544
Score = 28.9 bits (64), Expect = 2.8
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 218 TKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVADRL 267
++L E+ K L E F D P EL+ +++ +V+ +
Sbjct: 31 SQLQEQFNKILP----EPTEGFAADDEPTTPA----ELVGKFLGYVSSLV 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.078
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 122 KDSDEK--NRL-FHAIETVPCVAKKAT 145
K + +K L +A ++ P +A KAT
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.21
Identities = 49/304 (16%), Positives = 94/304 (30%), Gaps = 90/304 (29%)
Query: 40 TAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVL---ENLAGRFMTEVQVAEAR 96
+ EE+D + K V+ L F +L E + +F+ EV R
Sbjct: 47 SKEEID---HI-------IMSKDAVSGTLRLF----WTLLSKQEEMVQKFVEEVL----R 88
Query: 97 AFYGF---QIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVP--------CVAKKAT 145
Y F I E S++ YI ++++RL++ + K
Sbjct: 89 INYKFLMSPIKTEQRQP---SMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 146 WALNWIDGSETFAE--------RLIAFAC----VEGIFFSGSFCAIFWLK------KRGL 187
L + + C V+ IFWL +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETV 198
Query: 188 MPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREF-------- 239
+ L +L+ + + ++ KL ++A ++ ++ + +
Sbjct: 199 LEML---QKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENCLLVLL 251
Query: 240 -VCDA-------LPCALVGMNGELMSQYIEFVADRLLGALGYG-KLYGVANPFDWMELIS 290
V +A L C ++ L +++ + V D L A L + E+ S
Sbjct: 252 NVQNAKAWNAFNLSCKIL-----LTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 291 LQGK 294
L K
Sbjct: 306 LLLK 309
Score = 27.9 bits (61), Expect = 6.1
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 207 DFACL-LYSLLRTKLSEERVKALVKEAVEIER-EFVCDALPCALVGMNGELMSQYIEFVA 264
+F C + + ++ LS+E + ++ + + L E +FV
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL-----SKQE--EMVQKFVE 84
Query: 265 DRLLGALGYGKLY 277
+ L + Y L
Sbjct: 85 EVL--RINYKFLM 95
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 30.9 bits (69), Expect = 0.60
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAF 164
+ E+Y+LL E Y++D D R ++ E + + W W G + +L+ F
Sbjct: 166 RGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 225
>3iu1_A Glycylpeptide N-tetradecanoyltransferase 1; N-myristoyltransferase,
NMT1, acyltransferase, phosphoprotein, structural
genomics; HET: MYA; 1.42A {Homo sapiens} PDB: 3iu2_A*
3iwe_A* 3jtk_A*
Length = 383
Score = 30.3 bits (68), Expect = 0.78
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAE-RLIAF 164
+ E+Y+LL E Y++D D R ++ E + + W W G + +L+ F
Sbjct: 53 RGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 112
>1iyk_A Myristoyl-COA:protein N-myristoyltransferase; HET: MYA MIM; 2.30A
{Candida albicans} SCOP: d.108.1.2 d.108.1.2 PDB:
1iyl_A* 1nmt_A
Length = 392
Score = 29.6 bits (66), Expect = 1.3
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAF 164
E+Y LL + Y++D D R ++ E K W +W G +L+AF
Sbjct: 34 NLQLDELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVGVRVKSTGKLVAF 93
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 29.5 bits (67), Expect = 1.5
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 296 NFFEKRVGEYQKASVMSSLNGNGGNHVFKIDEDF 329
F+EK ++ L+G GG +F++ E
Sbjct: 149 AFWEK-----HSDIILKPLDGMGGASIFRVKEGD 177
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid binding protein, acid ceramidase,farber disease,
lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C
2rb3_A 2r1q_A 2r0r_A
Length = 80
Score = 27.2 bits (60), Expect = 2.3
Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 202 EGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIE 261
+G C+ L L L + K + A+E C LP + +++Y
Sbjct: 1 DGGFCEVCKKLVGYLDRNLEKNSTKQEILAALE----KGCSFLPDPYQKQCDQFVAEYEP 56
Query: 262 FVADRLL 268
+ + L+
Sbjct: 57 VLIEILV 63
>2wuu_A N-myristoyltransferase; acyltransferase; HET: NHM; 1.42A
{Leishmania donovani} PDB: 3h5z_A* 4a2z_A* 4a30_A*
4a31_A* 4a32_A* 4a33_A* 2wsa_A*
Length = 421
Score = 28.9 bits (64), Expect = 2.5
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAF 164
+ +Y LL + Y++D D R ++ E + ++ +W ++L+AF
Sbjct: 66 ADDIHAIYELLRDNYVEDDDSMFRFNYSEEFLQWALCPPSYIPDWHVAVRRKADKKLLAF 125
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 26.9 bits (59), Expect = 2.5
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 201 DEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYI 260
D ++C+ L + + + + + +A + +C LP +L E++ Y
Sbjct: 2 DSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFD----KMCSKLPKSLSEECQEVVDTYG 57
Query: 261 EFVADRLL 268
+ LL
Sbjct: 58 SSILSILL 65
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 28.4 bits (63), Expect = 3.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDGSETFAE-RLIAF 164
E SE+Y+LL + Y++D D R ++ E + + W G + A +LI F
Sbjct: 55 EKDRSEIYTLLTDNYVEDDDNIFRFNYSAEFLLWALTSPNYLKTWHIGVKYDASNKLIGF 114
>1iic_A Peptide N-myristoyltransferase; HET: MYA; 2.20A {Saccharomyces
cerevisiae} SCOP: d.108.1.2 d.108.1.2 PDB: 1iid_A*
2nmt_A* 2p6e_A* 2p6f_A* 2p6g_A*
Length = 422
Score = 27.4 bits (60), Expect = 7.2
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAF 164
+ +++ LL E Y++D D R + E K W +W G ++L+AF
Sbjct: 56 KKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAF 115
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 25.8 bits (56), Expect = 7.7
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 206 CDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGELMSQYIEFVAD 265
C+ L + + + + + +A + +C LP +L E++ Y +
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFD----KMCSKLPKSLSEECQEVVDTYGSSILS 63
Query: 266 RLL 268
LL
Sbjct: 64 ILL 66
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 237
Score = 27.0 bits (60), Expect = 7.9
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 56 LTADEKHF--VTHVLAFFAASDGIVLENLAGRF-MTEVQVAEARAFYGFQIAIENIHSEM 112
T+ ++ A + +++ + G + TE+Q A A Q A +++
Sbjct: 171 PTSKQEKEARAVLTFALDSVERKLLMSSTKGLYSDTELQQCLAAA----QAASQHVFRFY 226
Query: 113 YSLLLETYIK 122
L Y K
Sbjct: 227 RESLQRRYSK 236
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 27.3 bits (60), Expect = 8.1
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 113 YSLLLETYIK---DSDEKNRLFHAIETVPCVAK 142
Y LLL++ + + E+ ++ A E +
Sbjct: 332 YPLLLQSIGQNTEEPTEREKVELAAECCREILH 364
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 27.2 bits (60), Expect = 9.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 113 YSLLLETYIK----DSDEKNRLFHAIETVPCVAK 142
Y LLLE+ IK + E +L A + + K
Sbjct: 214 YPLLLESIIKHTEGGTSEHEKLCRARDQCREILK 247
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,228,088
Number of extensions: 315521
Number of successful extensions: 781
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 46
Length of query: 329
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 235
Effective length of database: 4,077,219
Effective search space: 958146465
Effective search space used: 958146465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)