RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 040427
(329 letters)
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 305 bits (781), Expect = e-103
Identities = 177/284 (62%), Positives = 219/284 (77%), Gaps = 2/284 (0%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWE-ALTADEKHFV 64
EEPLL + +R +FPI+Y +IW+ YK+AEASFWTAEE+DLS+D+ W + +E+ F+
Sbjct: 50 EEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNRMNENERFFI 109
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
+ VLAFFAASDGIV ENL F TEVQ+ EA++FYGFQI IENIHSE YSLL++TYIKD
Sbjct: 110 SRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDP 169
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGS-ETFAERLIAFACVEGIFFSGSFCAIFWLK 183
E LF+AI T+P + +KA WAL WI + F ERL+AFA +EG+FFSGSF +IFWLK
Sbjct: 170 KESEFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLK 229
Query: 184 KRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDA 243
KRG+MPGLTFSNELI RDEGLH DFACLL++ L+ K V+ +V EAVEIE+ + DA
Sbjct: 230 KRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDA 289
Query: 244 LPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWME 287
LP AL+GMN +LM+QY+EFVADRLL A G K Y V NPFD+ME
Sbjct: 290 LPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME 333
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 276 bits (706), Expect = 5e-93
Identities = 195/281 (69%), Positives = 231/281 (82%), Gaps = 1/281 (0%)
Query: 4 IPEEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHF 63
+ +EPLL NP RF +FPI+Y IW+MYKKAEASFWTAEEVDLS+D++HWEAL DE+HF
Sbjct: 1 VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHF 60
Query: 64 VTHVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKD 123
++HVLAFFAASDGIV ENL RF EVQV EAR FYGFQIA+ENIHSEMYSLL++TYIKD
Sbjct: 61 ISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKD 120
Query: 124 SDEKNRLFHAIETVPCVAKKATWALNWIDGSE-TFAERLIAFACVEGIFFSGSFCAIFWL 182
E+ LF+AIET+PCV KKA WAL WI E T+ ER++AFA VEGIFFSGSF +IFWL
Sbjct: 121 PKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWL 180
Query: 183 KKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCD 242
KKRGLMPGLTFSNELISRDEGLHCDFACL++ L K +E+RV+ ++ AV IE+EF+ +
Sbjct: 181 KKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTE 240
Query: 243 ALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPF 283
ALP L+GMN LM QYIEFVADRL+ LG+ K++ V NPF
Sbjct: 241 ALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPF 281
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 252 bits (644), Expect = 1e-83
Identities = 120/273 (43%), Positives = 179/273 (65%), Gaps = 2/273 (0%)
Query: 6 EEPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVT 65
+E LL N RF MFPI+Y +IW YKK EASFWTAEE++L++D ++ LT D+K ++
Sbjct: 14 DEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIG 73
Query: 66 HVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSD 125
++LA +SD +V + L F ++Q E ++FYGFQI +ENI+SE+YS++++ + KD
Sbjct: 74 NLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKD-P 132
Query: 126 EKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAFACVEGIFFSGSFCAIFWLKK 184
+ LF I +P V KA + WI +AERL+AFA EGIF +G++ ++FWL
Sbjct: 133 KNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTD 192
Query: 185 RGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSEERVKALVKEAVEIEREFVCDAL 244
+ +MPGL +N I RD G + DF+CLL++ LRTK + + ++ ++ EAVEIE+E+ ++L
Sbjct: 193 KKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSL 252
Query: 245 PCALVGMNGELMSQYIEFVADRLLGALGYGKLY 277
P GM+ + + YIEFVAD LL G K Y
Sbjct: 253 PVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYY 285
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 253 bits (646), Expect = 2e-83
Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 26/295 (8%)
Query: 15 DRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEA--LTADEKHFVTHVLAFFA 72
D + PI+Y WE Y A+ W E+ + +D+ W++ L+ DE+ + L FF+
Sbjct: 26 DVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSDRLSEDERRVILLNLGFFS 85
Query: 73 ASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFH 132
++ +V N+ V EAR + Q E +H+ + + E+ D E +F+
Sbjct: 86 TAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKE---IFN 142
Query: 133 AIETVPCVAKKATWALNW-------------IDGSETFAERLIAFACVE-GIFFSGSFCA 178
A + K + + ++G + F + L+ + + GIFF F
Sbjct: 143 AYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVM 202
Query: 179 IFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKE 231
I ++ M G+ + I RDE +H +F L + ++ + E + + L+K
Sbjct: 203 ILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKR 262
Query: 232 AVEIEREFVCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGVANPFDWM 286
AV++E E+ D LP ++G+ + Y++ +ADR L +G +Y NPF WM
Sbjct: 263 AVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 232 bits (593), Expect = 3e-75
Identities = 68/326 (20%), Positives = 124/326 (38%), Gaps = 47/326 (14%)
Query: 6 EEPLLAPNPDRFCMF-PIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFV 64
+EP+ P + +Y ++ +K + FW EEVD+S+D ++AL EKH
Sbjct: 14 KEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIF 73
Query: 65 THVLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDS 124
L + D I + + + + E + E IHS Y+ ++ + D
Sbjct: 74 ISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDP 133
Query: 125 DEKNRLFHAIETVPCVAKKATWALNWIDGS------------------------------ 154
F I T + K+A ++ D
Sbjct: 134 SVV---FDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELK 190
Query: 155 ETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYS 214
+ L++ +E I F SF F +R LM G LI+RDE LH + +
Sbjct: 191 KKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLN 250
Query: 215 LLRTKLSEE-----------RVKALVKEAVEIEREFVCDAL-PCALVGMNGELMSQYIEF 262
LLR+ + L +A + E+++ +++G+N +++ QY+E+
Sbjct: 251 LLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEY 310
Query: 263 VADRLLGALGYGKLYGVA-NPFDWME 287
+ + + A+G + NP W+
Sbjct: 311 ITNIRMQAVGLDLPFQTRSNPIPWIN 336
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 211 bits (537), Expect = 1e-67
Identities = 59/280 (21%), Positives = 111/280 (39%), Gaps = 17/280 (6%)
Query: 7 EPLLAPNPDRFCMFPIQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTH 66
+P+ A N + I + E++ + +FW E++ +S D++ W +T E+
Sbjct: 1 DPVKAINWNV-----IPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMR 55
Query: 67 VLAFFAASDGIVLENLAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDE 126
V D I A + + + A Y +E++H++ YS + T +
Sbjct: 56 VFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST-PQ 114
Query: 127 KNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRG 186
N F E + +KA +++ + + ++ +A +E F F +L R
Sbjct: 115 INEAFRWSEENENLQRKAKIIMSYYN-GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRA 173
Query: 187 LMPGLTFSNELISRDEGLHCDFACLLYSLLRTKLSE-------ERVKALVKEAVEIEREF 239
+ LI RDE +H + Y KLSE L+ + E E E+
Sbjct: 174 KLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLMYDLYENEIEY 233
Query: 240 VCDALPCALVGMNGELMSQYIEFVADRLLGALGYGKLYGV 279
D +G E + +++ + A++ L LGY L+
Sbjct: 234 TEDIYDD--LGWT-EDVKRFLRYNANKALNNLGYEGLFPT 270
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 205 bits (523), Expect = 2e-65
Identities = 59/278 (21%), Positives = 104/278 (37%), Gaps = 18/278 (6%)
Query: 22 IQYPQIWEMYKKAEASFWTAEEVDLSQDLRHWEALTADEKHFVTHVLAFFAASDGIVLEN 81
IQ + E++ + ++FW E+V LS D+ W+ L+A E+ V D I
Sbjct: 9 IQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIA 68
Query: 82 LAGRFMTEVQVAEARAFYGFQIAIENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVA 141
A M + A +E +H+ YS + T + + + E P +
Sbjct: 69 GAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAA-YAWSEENPPLQ 127
Query: 142 KKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRD 201
+KA L S+ ++ IA +E F F + RG + LI RD
Sbjct: 128 RKAQIILAHYV-SDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRD 186
Query: 202 EGLHCDFACLLYSLL-------RTKLSEERVKALVKEAVEIEREFVCDALPCALVGMNGE 254
E +H + Y + + + L+ E + E + +AL +N
Sbjct: 187 EAVHGYYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRY-TEALYAETGWVN-- 243
Query: 255 LMSQYIEFVADRLLGALGYGKLYGVA----NP--FDWM 286
+ ++ + A++ L LGY L+ NP +
Sbjct: 244 DVKAFLCYNANKALMNLGYEALFPPEMADVNPAILAAL 281
>d1rxta1 d.108.1.2 (A:78-218) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 141
Score = 27.4 bits (61), Expect = 1.2
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG-SETFAERLIAF 164
+ E+Y+LL E Y++D D R ++ E + + W W G + +L+ F
Sbjct: 12 RGVLKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGF 71
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 273
Score = 27.0 bits (60), Expect = 3.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 267 LLGALGYGKLYGVANPFDWMELISLQ 292
LLG+ G+ YG+ + DW+ Q
Sbjct: 138 LLGSWGHAFPYGILSHLDWVNNFGYQ 163
>d1iyka1 d.108.1.2 (A:60-224) N-myristoyl transferase, NMT {Yeast
(Candida albicans) [TaxId: 5476]}
Length = 165
Score = 25.9 bits (57), Expect = 4.6
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 106 ENIHSEMYSLLLETYIKDSDEKNRLFHAIETVPCVAKKATWALNWIDG 153
E+Y LL + Y++D D R ++ E K W +W G
Sbjct: 34 NLQLDELYKLLYDNYVEDIDATFRFKYSHEFFQWALKPPGWRKDWHVG 81
>d1hdia_ c.86.1.1 (A:) Phosphoglycerate kinase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 413
Score = 25.8 bits (56), Expect = 9.2
Identities = 9/55 (16%), Positives = 15/55 (27%), Gaps = 3/55 (5%)
Query: 126 EKNRLFHAIETVPCVAKKATWALNWIDGSETFAERLIAFACVEGIFFSGSFCAIF 180
+N FH E A + F L A ++ + +F
Sbjct: 115 LENLRFHVEEEGKGKDASGNKAAGEPAKIKAFRASLSALG---DVYVNDAFGTAH 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,274,790
Number of extensions: 58464
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 25
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.7 bits)