BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040428
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 280 bits (717), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 202/311 (64%), Gaps = 40/311 (12%)
Query: 38 NTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKV 97
NT T G++ DV+S++ST+G + GR VTVP FI C +LQ LA+GVVG+AGLGR+++
Sbjct: 103 NTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRI 162
Query: 98 ALPSQLV-AFSLKRKFALYLS--PFGNGVIIFSDGPYD-----------------LNFDV 137
ALPSQ AFS KRKFA+ LS N VIIF + PY L V
Sbjct: 163 ALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPV 222
Query: 138 SNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETS 197
S +A+ GEPSVEYFIGV S+ +N K V LN +LLSI + G+ G KI+T+NPYTVLETS
Sbjct: 223 STSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETS 282
Query: 198 IYKAFVQAF--ANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR 255
IYKA +AF +A +TRV+ VAP ACF +I TR+ P VP IDLVLQ+++VVW
Sbjct: 283 IYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWT 342
Query: 256 F------------------VDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFE 297
VDGG N +TSIVIGG QLE+NL+QFDLATSR+ FS +LL
Sbjct: 343 ITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGS 402
Query: 298 QTTCSNFNFTS 308
+TTC+NFNFTS
Sbjct: 403 RTTCANFNFTS 413
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 280 bits (717), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 162/311 (52%), Positives = 202/311 (64%), Gaps = 40/311 (12%)
Query: 38 NTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKV 97
NT T G++ DV+S++ST+G + GR VTVP FI C +LQ LA+GVVG+AGLGR+++
Sbjct: 103 NTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRI 162
Query: 98 ALPSQLV-AFSLKRKFALYLS--PFGNGVIIFSDGPYD-----------------LNFDV 137
ALPSQ AFS KRKFA+ LS N VIIF + PY L V
Sbjct: 163 ALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPV 222
Query: 138 SNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETS 197
S +A+ GEPSVEYFIGV S+ +N K V LN +LLSI + G+ G KI+T+NPYTVLETS
Sbjct: 223 STSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETS 282
Query: 198 IYKAFVQAF--ANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR 255
IYKA +AF +A +TRV+ VAP ACF +I TR+ P VP IDLVLQ+++VVW
Sbjct: 283 IYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWT 342
Query: 256 F------------------VDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFE 297
VDGG N +TSIVIGG QLE+NL+QFDLATSR+ FS +LL
Sbjct: 343 ITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGS 402
Query: 298 QTTCSNFNFTS 308
+TTC+NFNFTS
Sbjct: 403 RTTCANFNFTS 413
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/310 (34%), Positives = 152/310 (49%), Gaps = 40/310 (12%)
Query: 31 LARRTISNTGTFGDIHIDVLSIQSTNGHNP--GRAVTVPNFILLCGSEFVLQ-GLANGVV 87
++ I+ G++ DVL+I +T G G VTVP F+ C F++Q GL
Sbjct: 97 MSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQ 156
Query: 88 GIAGLGRSKVALPSQLVA-FSLKRKFALYLS--PFGNGVIIFSDGPYDL-NFDVSNTASG 143
G+AGLG + ++LP+QL + F L+R+F LS P G IIF D P ++ F +
Sbjct: 157 GVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHD 216
Query: 144 FLGEPSV-----EYFIGVASVNVNGKAV-PLNKTLLSIDNEGVDGAKINTVNPYTVLETS 197
P EY + V S+ +N +V PLNK +I G I+T P+ VL+ S
Sbjct: 217 LAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQS 276
Query: 198 IYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKN-VVWRF 256
+Y+AF Q FA +PK +V VAP CF I P +DLV+ N VWR
Sbjct: 277 VYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKIN------AYPSVDLVMDKPNGPVWRI 330
Query: 257 ------------------VDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQ 298
++GG+ P+ I +G QLE NL+ FDLA SR+ FS S L
Sbjct: 331 SGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSH 390
Query: 299 -TTCSN-FNF 306
C++ FNF
Sbjct: 391 GVKCADLFNF 400
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 131/301 (43%), Gaps = 49/301 (16%)
Query: 43 GDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQ 102
G + + +T+G+ P V V + C +L L G G+AGL S +ALPSQ
Sbjct: 97 GSLFHTRFAANTTDGNKPVSEVNV-RVLAACAPSKLLASLPRGSTGVAGLAGSGLALPSQ 155
Query: 103 LV-AFSLKRKFALYLSPFGNGVIIFSDGP-----YDLNFDVSN-TASGFLGEPSVEYFIG 155
+ A + KF L L G GV IF GP + + D + A G G P+ ++I
Sbjct: 156 VASAQKVPNKFLLCLPTGGPGVAIFGGGPLPWPQFTQSMDYTPLVAKG--GSPA--HYIS 211
Query: 156 VASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAF--------A 207
S+ V VP+++ L+ G ++T PY +L +Y+ V AF A
Sbjct: 212 ARSIKVENTRVPISERALA-----TGGVMLSTRLPYVLLRRDVYRPLVDAFTKALAAQPA 266
Query: 208 NAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQI--------DLVLQNKN-------- 251
N P V PVAP C+ + +G +VP + D + KN
Sbjct: 267 NGAPVARAVKPVAPFELCYDTKTLGNNPGGYWVPNVLLELDGGSDWAMTGKNSMVDVKPG 326
Query: 252 ------VVWRFVDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTCSNFN 305
V + VD G ++++GG Q+E+ +L FD+ RL F F T CS+FN
Sbjct: 327 TACVAFVEMKGVDAGDGSAPAVILGGAQMEDFVLDFDMEKKRLGFLRLPHF--TGCSSFN 384
Query: 306 F 306
F
Sbjct: 385 F 385
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 114/274 (41%), Gaps = 43/274 (15%)
Query: 54 STNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLV-AFSLKRKF 112
+T+G P V V + C +L L G G+AGL S +ALP+Q+ A + +F
Sbjct: 106 TTDGSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRF 164
Query: 113 ALYLSPFGNGVIIFSDGPYDL-NFDVSNTASGFL---GEPSVEYFIGVASVNVNGKAVPL 168
L L G GV IF GP F S + + G P+ ++I S+ V VP+
Sbjct: 165 LLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPA--HYISARSIVVGDTRVPV 222
Query: 169 NKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAF--------ANAMPKVTRVSPVA 220
+ L+ G ++T PY +L +Y+ + AF AN P V VA
Sbjct: 223 PEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVA 277
Query: 221 PSRACFRLQDIGFTRIRPFVPQI--------DLVLQNKN--------------VVWRFVD 258
P C+ + +G VP + D + KN V + V
Sbjct: 278 PFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVA 337
Query: 259 GGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSN 292
G ++++GG Q+E+ +L FD+ RL FS
Sbjct: 338 AGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 114/274 (41%), Gaps = 43/274 (15%)
Query: 54 STNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLV-AFSLKRKF 112
+T+G P V V + C +L L G G+AGL S +ALP+Q+ A + +F
Sbjct: 106 TTDGSKPVSKVNV-GVLAACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRF 164
Query: 113 ALYLSPFGNGVIIFSDGPYDL-NFDVSNTASGFL---GEPSVEYFIGVASVNVNGKAVPL 168
L L G GV IF GP F S + + G P+ ++I S+ V VP+
Sbjct: 165 LLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPA--HYISARSIVVGDTRVPV 222
Query: 169 NKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAF--------ANAMPKVTRVSPVA 220
+ L+ G ++T PY +L +Y+ + AF AN P V VA
Sbjct: 223 PEGALA-----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVAVA 277
Query: 221 PSRACFRLQDIGFTRIRPFVPQI--------DLVLQNKN--------------VVWRFVD 258
P C+ + +G VP + D + KN V + V
Sbjct: 278 PFGVCYDTKTLGNNLGGYAVPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVA 337
Query: 259 GGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSN 292
G ++++GG Q+E+ +L FD+ RL FS
Sbjct: 338 AGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSR 371
>pdb|1U4F|A Chain A, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|B Chain B, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|C Chain C, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
pdb|1U4F|D Chain D, Crystal Structure Of Cytoplasmic Domains Of Irk1 (Kir2.1)
Channel
Length = 270
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 10/114 (8%)
Query: 102 QLVAFSLKRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGVASVNV 161
Q + KR L S N VI DG L + V N L E V + + +
Sbjct: 23 QFINVGEKRNETLVFS--HNAVIAMRDGKLCLMWRVGNLRKSHLVEAHVRAQLLKSRITS 80
Query: 162 NGKAVPLNKTLLSID-NEGVDGAKINTVNPYTVL-----ETSIYKAFVQAFANA 209
G+ +PL++ +++ + G+D +I V+P T++ ++ +Y Q NA
Sbjct: 81 EGEYIPLDQIDINVGFDSGID--RIFLVSPITIVHEIDEDSPLYDLSKQDIDNA 132
>pdb|2GIX|A Chain A, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|B Chain B, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|C Chain C, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
pdb|2GIX|D Chain D, Cytoplasmic Domain Structure Of Kir2.1 Containing
Andersen's Mutation R218q And Rescue Mutation T309k
Length = 208
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 102 QLVAFSLKRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGVASVNV 161
Q + KR L S N VI DG L + V N L E V + + +
Sbjct: 18 QFINVGEKRNETLVFSH--NAVIAMRDGKLCLMWRVGNLQKSHLVEAHVRAQLLKSRITS 75
Query: 162 NGKAVPLNKTLLSID-NEGVDGAKINTVNPYTVLE 195
G+ +PL++ +++ + G+D +I V+P T++
Sbjct: 76 EGEYIPLDQIDINVGFDSGID--RIFLVSPITIVH 108
>pdb|2V84|A Chain A, Crystal Structure Of The Tp0655 (Tppotd) Lipoprotein Of
Treponema Pallidum
Length = 343
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 147 EPSVEYFIGVASVNVNGKAVPLNKTLLSI 175
E SV Y++G A + VN KAVP SI
Sbjct: 122 EYSVPYYLGAAGIAVNKKAVPSYARTWSI 150
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,901,930
Number of Sequences: 62578
Number of extensions: 366919
Number of successful extensions: 761
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 14
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)