Query 040428
Match_columns 311
No_of_seqs 169 out of 1115
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:19:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-45 3.5E-50 349.3 27.2 266 26-294 66-362 (362)
2 PLN03146 aspartyl protease fam 100.0 9.3E-45 2E-49 351.3 29.7 279 2-304 119-431 (431)
3 cd05472 cnd41_like Chloroplast 100.0 1.2E-40 2.6E-45 308.2 26.7 257 16-301 23-299 (299)
4 KOG1339 Aspartyl protease [Pos 100.0 5.2E-37 1.1E-41 294.8 25.0 274 2-302 82-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 7.7E-35 1.7E-39 272.5 22.1 243 7-291 48-324 (325)
6 cd05476 pepsin_A_like_plant Ch 100.0 3.3E-34 7.2E-39 261.0 22.4 227 28-301 31-265 (265)
7 cd05475 nucellin_like Nucellin 100.0 6E-34 1.3E-38 260.5 23.7 230 25-301 37-273 (273)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 4.5E-34 9.6E-39 267.7 23.2 245 2-302 38-326 (326)
9 cd05478 pepsin_A Pepsin A, asp 100.0 3.9E-34 8.4E-39 267.0 22.7 243 7-292 50-317 (317)
10 cd05477 gastricsin Gastricsins 100.0 7.8E-34 1.7E-38 265.0 23.5 245 7-292 43-317 (318)
11 cd05486 Cathespin_E Cathepsin 100.0 6.5E-34 1.4E-38 265.4 20.8 243 7-292 40-316 (316)
12 cd05488 Proteinase_A_fungi Fun 100.0 1.6E-33 3.5E-38 263.2 21.5 241 8-291 51-319 (320)
13 cd05485 Cathepsin_D_like Cathe 100.0 7E-33 1.5E-37 259.9 21.7 241 7-291 53-328 (329)
14 PTZ00165 aspartyl protease; Pr 100.0 1.3E-32 2.8E-37 268.8 23.8 246 7-302 160-449 (482)
15 cd05474 SAP_like SAPs, pepsin- 100.0 1.2E-32 2.5E-37 253.9 21.3 225 29-292 31-294 (295)
16 cd05473 beta_secretase_like Be 100.0 5.5E-32 1.2E-36 257.2 25.3 265 7-306 39-352 (364)
17 cd06097 Aspergillopepsin_like 100.0 2.6E-32 5.7E-37 250.1 22.0 227 6-291 39-277 (278)
18 cd05487 renin_like Renin stimu 100.0 4.2E-32 9.2E-37 254.2 22.4 243 6-292 49-325 (326)
19 cd06098 phytepsin Phytepsin, a 100.0 4.7E-32 1E-36 253.1 22.3 232 7-291 51-316 (317)
20 cd05471 pepsin_like Pepsin-lik 100.0 2.2E-30 4.8E-35 236.1 23.2 214 25-291 55-282 (283)
21 PTZ00147 plasmepsin-1; Provisi 100.0 3.8E-30 8.2E-35 249.7 22.1 241 6-293 178-449 (453)
22 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.3E-30 1.6E-34 247.3 22.8 240 7-293 178-448 (450)
23 PF14541 TAXi_C: Xylanase inhi 99.9 3.7E-27 7.9E-32 199.4 13.7 140 151-292 1-161 (161)
24 PF00026 Asp: Eukaryotic aspar 99.9 8.6E-26 1.9E-30 209.5 19.4 220 36-292 64-316 (317)
25 PF14543 TAXi_N: Xylanase inhi 99.8 1.4E-18 3.1E-23 147.3 11.5 115 6-128 30-164 (164)
26 cd05470 pepsin_retropepsin_lik 98.3 3.1E-06 6.7E-11 66.1 7.4 69 8-92 39-109 (109)
27 cd05479 RP_DDI RP_DDI; retrope 93.9 0.24 5.1E-06 39.7 6.8 93 182-290 29-124 (124)
28 TIGR02281 clan_AA_DTGA clan AA 88.6 0.97 2.1E-05 36.1 5.0 37 148-202 8-44 (121)
29 PF13650 Asp_protease_2: Aspar 87.4 0.74 1.6E-05 33.7 3.5 21 182-202 11-31 (90)
30 PF08284 RVP_2: Retroviral asp 86.7 1.6 3.5E-05 35.6 5.3 96 182-292 34-131 (135)
31 cd05484 retropepsin_like_LTR_2 85.2 1.2 2.6E-05 33.3 3.6 31 158-203 4-34 (91)
32 PF13975 gag-asp_proteas: gag- 85.2 1.5 3.2E-05 31.5 4.0 21 182-202 21-41 (72)
33 cd05483 retropepsin_like_bacte 80.7 3.3 7.1E-05 30.5 4.5 22 182-203 15-36 (96)
34 cd06095 RP_RTVL_H_like Retrope 75.8 3.6 7.9E-05 30.4 3.4 21 182-202 11-31 (86)
35 PF00077 RVP: Retroviral aspar 65.0 4.8 0.0001 30.3 2.0 19 182-200 18-36 (100)
36 PF09668 Asp_protease: Asparty 62.0 10 0.00023 30.4 3.5 29 159-202 29-57 (124)
37 cd05481 retropepsin_like_LTR_1 61.4 9.3 0.0002 28.9 3.0 22 182-203 12-33 (93)
38 COG3577 Predicted aspartyl pro 54.8 28 0.00061 30.5 5.1 37 147-201 101-137 (215)
39 COG5550 Predicted aspartyl pro 53.3 8.9 0.00019 30.7 1.7 88 183-288 29-117 (125)
40 TIGR03698 clan_AA_DTGF clan AA 47.4 14 0.0003 28.7 2.0 89 182-288 18-107 (107)
41 cd05480 NRIP_C NRIP_C; putativ 30.8 69 0.0015 24.8 3.4 85 183-285 12-103 (103)
42 KOG0012 DNA damage inducible p 28.0 3.7E+02 0.0081 25.7 8.3 91 183-292 249-345 (380)
43 cd00303 retropepsin_like Retro 23.5 67 0.0015 21.6 2.2 21 182-202 11-31 (92)
44 PF05585 DUF1758: Putative pep 21.3 59 0.0013 26.9 1.7 23 181-203 13-35 (164)
45 TIGR03778 VPDSG_CTERM VPDSG-CT 21.3 20 0.00044 20.5 -0.8 14 186-199 3-16 (26)
No 1
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-45 Score=349.26 Aligned_cols=266 Identities=46% Similarity=0.726 Sum_probs=195.6
Q ss_pred CCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCCCCChHHHHh-
Q 040428 26 VAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLV- 104 (311)
Q Consensus 26 ~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~- 104 (311)
++|.|..+...+|+.++|.|++|+|+|+..+|.... ...++++.|||++.+.+.+++...+||||||++++|+++||.
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~-~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~ 144 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPL-LVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLAS 144 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcc-cceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhh
Confidence 357775442237889999999999999875432111 136889999999987433445568999999999999999998
Q ss_pred hccCCCcEEeccCCC--CcceEEEcCCCCCC--------CCcceeeeeecCCCCCcceEEEEEEEEEcceEeecCccccc
Q 040428 105 AFSLKRKFALYLSPF--GNGVIIFSDGPYDL--------NFDVSNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLS 174 (311)
Q Consensus 105 ~~gl~~~FS~cL~~~--~~G~l~fG~~d~~~--------~~~~s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~ 174 (311)
+++.+++|||||++. .+|+|+||+.+... +.-..+|| +.+|....+|+|+|++|+||++++.+++..+.
T Consensus 145 ~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl-~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~ 223 (362)
T cd05489 145 AFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPL-LTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSA 223 (362)
T ss_pred hcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCcccccc-ccCCCCCCceEEEEEEEEECCEECCCCchhcc
Confidence 444568999999875 58999999987421 10011344 44433467999999999999999988777665
Q ss_pred ccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCC-CCCcceeeecCCCccccCCCCCeEEEEEcC-Cce
Q 040428 175 IDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPV-APSRACFRLQDIGFTRIRPFVPQIDLVLQN-KNV 252 (311)
Q Consensus 175 ~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g-~~~ 252 (311)
++.++.+++||||||++|+||+++|++|+++|.+++......... ...++||+............+|.|+|+|++ + +
T Consensus 224 ~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g-~ 302 (362)
T cd05489 224 NDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGG-V 302 (362)
T ss_pred ccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCC-e
Confidence 555567899999999999999999999999999887633222221 123799986532211112579999999997 4 4
Q ss_pred EEE------eec--CC-----CC-----CCcceeeccceeeceEEEEECCCCEEEEEecC
Q 040428 253 VWR------FVD--GG-----VN-----PQTSIVIGGCQLENNLLQFDLATSRLDFSNSL 294 (311)
Q Consensus 253 ~l~------~~~--~G-----~~-----~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~ 294 (311)
.|. +++ .+ +. +.+.||||++|||+++||||++++|||||++|
T Consensus 303 ~~~l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~~ 362 (362)
T cd05489 303 NWTIFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSSL 362 (362)
T ss_pred EEEEcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccCC
Confidence 444 222 11 11 13579999999999999999999999999764
No 2
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=351.26 Aligned_cols=279 Identities=22% Similarity=0.334 Sum_probs=210.2
Q ss_pred CCCCCCCCCCCCCCCceeec---------------CCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceee
Q 040428 2 CPLPIKQPIAAQHSPILLML---------------KPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTV 66 (311)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~---------------~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v 66 (311)
|.-+..+.|.|..|+++..+ |..+..|.|.+.|. ||+.++|.|++|+|+|++..+ ....+
T Consensus 119 C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~Yg-dgs~~~G~l~~Dtltlg~~~~----~~~~v 193 (431)
T PLN03146 119 CYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYSYG-DGSFTKGNLAVETLTIGSTSG----RPVSF 193 (431)
T ss_pred cccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEEeC-CCCceeeEEEEEEEEeccCCC----Cccee
Confidence 55556678999999999876 33334688888874 888899999999999987432 22478
Q ss_pred CcEEEEeeecccccCCC-CCcceEEeeCCCCCChHHHHhhccCCCcEEeccCCC-----CcceEEEcCCCCCCCCc-cee
Q 040428 67 PNFILLCGSEFVLQGLA-NGVVGIAGLGRSKVALPSQLVAFSLKRKFALYLSPF-----GNGVIIFSDGPYDLNFD-VSN 139 (311)
Q Consensus 67 ~~~~FGc~~~~~~~~~~-~~~~GIlGLg~~~~Sl~~ql~~~gl~~~FS~cL~~~-----~~G~l~fG~~d~~~~~~-~s~ 139 (311)
+++.|||++.+ .+.+ ...+||||||++++|+++||... +.++|||||.+. ..|.|+||+.+...+.. ..+
T Consensus 194 ~~~~FGc~~~~--~g~f~~~~~GilGLG~~~~Sl~sql~~~-~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~t 270 (431)
T PLN03146 194 PGIVFGCGHNN--GGTFDEKGSGIVGLGGGPLSLISQLGSS-IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVST 270 (431)
T ss_pred CCEEEeCCCCC--CCCccCCCceeEecCCCCccHHHHhhHh-hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEc
Confidence 99999999987 3333 35899999999999999999721 246999999642 47999999865332211 123
Q ss_pred eeeecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCC
Q 040428 140 TASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPV 219 (311)
Q Consensus 140 ~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~ 219 (311)
|| +.+ ....+|+|+|++|+||+++++++...|. ..+.+++|||||||+|+||+++|++|+++|.+++...+.....
T Consensus 271 Pl-~~~-~~~~~y~V~L~gIsVgg~~l~~~~~~~~--~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~ 346 (431)
T PLN03146 271 PL-VSK-DPDTFYYLTLEAISVGSKKLPYTGSSKN--GVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQ 346 (431)
T ss_pred cc-ccC-CCCCeEEEeEEEEEECCEECcCCccccc--cCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCC
Confidence 55 322 2357999999999999999988776654 2456789999999999999999999999999988532222222
Q ss_pred CCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE----eec--CC-----CCC-CcceeeccceeeceEEEEECCCCE
Q 040428 220 APSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR----FVD--GG-----VNP-QTSIVIGGCQLENNLLQFDLATSR 287 (311)
Q Consensus 220 ~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~----~~~--~G-----~~~-~~~~ILG~~~~r~~~vvfDl~~~r 287 (311)
..+++||+.... ..+|.|+|+|+|.++.+. ++. .+ +.+ .+.+|||+.|||+++||||++++|
T Consensus 347 ~~~~~C~~~~~~------~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~~~~~IlG~~~q~~~~vvyDl~~~~ 420 (431)
T PLN03146 347 GLLSLCYSSTSD------IKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPTSSIAIFGNLAQMNFLVGYDLESKT 420 (431)
T ss_pred CCCCccccCCCC------CCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecCCCceEECeeeEeeEEEEEECCCCE
Confidence 346799985421 468999999996544443 222 22 112 356999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCC
Q 040428 288 LDFSNSLLFEQTTCSNF 304 (311)
Q Consensus 288 iGFa~~~~~~~~~C~~~ 304 (311)
|||| +++|.++
T Consensus 421 igFa------~~~C~~~ 431 (431)
T PLN03146 421 VSFK------PTDCTKM 431 (431)
T ss_pred Eeee------cCCcCcC
Confidence 9999 9999864
No 3
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1.2e-40 Score=308.24 Aligned_cols=257 Identities=25% Similarity=0.369 Sum_probs=189.1
Q ss_pred CceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCC
Q 040428 16 PILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRS 95 (311)
Q Consensus 16 ~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~ 95 (311)
+...|+-..++ |.+...|. +|+.++|.+++|+|+|++. ..++++.|||+..+ ++.+...+||||||+.
T Consensus 23 Ss~~Wv~c~~c-~~~~i~Yg-~Gs~~~G~~~~D~v~ig~~--------~~~~~~~Fg~~~~~--~~~~~~~~GilGLg~~ 90 (299)
T cd05472 23 SDLTWVQCQPC-CLYQVSYG-DGSYTTGDLATDTLTLGSS--------DVVPGFAFGCGHDN--EGLFGGAAGLLGLGRG 90 (299)
T ss_pred CCcccccCCCC-CeeeeEeC-CCceEEEEEEEEEEEeCCC--------CccCCEEEECCccC--CCccCCCCEEEECCCC
Confidence 44555533344 88888774 8888899999999999863 15789999999987 3444578999999999
Q ss_pred CCChHHHHhhccCCCcEEeccCCC---CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEEEEEEEEEcceEeecCccc
Q 040428 96 KVALPSQLVAFSLKRKFALYLSPF---GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTL 172 (311)
Q Consensus 96 ~~Sl~~ql~~~gl~~~FS~cL~~~---~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~ 172 (311)
.+|++.|+... .+++||+||++. .+|+|+||++|...+.-...|+ ..++....+|.|+|++|+|+++.+.+++..
T Consensus 91 ~~s~~~ql~~~-~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv-~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~ 168 (299)
T cd05472 91 KLSLPSQTASS-YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPM-LSNPRVPTFYYVGLTGISVGGRRLPIPPAS 168 (299)
T ss_pred cchHHHHhhHh-hcCceEEEccCCCCCCCceEEeCCccccCCCceECCC-ccCCCCCCeEEEeeEEEEECCEECCCCccc
Confidence 99999999722 258999999863 5799999999974121111243 333234579999999999999988754321
Q ss_pred ccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCC-c
Q 040428 173 LSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNK-N 251 (311)
Q Consensus 173 ~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~-~ 251 (311)
...+++|||||||+++||+++|++|.+++.+++....+......++.||+.+... ...+|+|+|+|+++ .
T Consensus 169 -----~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~f~f~~g~~ 239 (299)
T cd05472 169 -----FGAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFR----SVSVPTVSLHFQGGAD 239 (299)
T ss_pred -----cCCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCc----CCccCCEEEEECCCCE
Confidence 1246899999999999999999999999998765332222223345799865332 24799999999854 3
Q ss_pred eEEE----ee---cCC-----CC----CCcceeeccceeeceEEEEECCCCEEEEEecCCCCCCCC
Q 040428 252 VVWR----FV---DGG-----VN----PQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTC 301 (311)
Q Consensus 252 ~~l~----~~---~~G-----~~----~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~C 301 (311)
+.+. ++ +.+ .. ..+.+|||+.|||++|+|||++++||||| +++|
T Consensus 240 ~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa------~~~C 299 (299)
T cd05472 240 VELDASGVLYPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFA------PGGC 299 (299)
T ss_pred EEeCcccEEEEecCCCCEEEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEe------cCCC
Confidence 3333 22 111 11 13579999999999999999999999999 8998
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-37 Score=294.82 Aligned_cols=274 Identities=25% Similarity=0.350 Sum_probs=202.2
Q ss_pred CCCCCCCCCCCCCCCceeecCCC-------------CCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCc
Q 040428 2 CPLPIKQPIAAQHSPILLMLKPA-------------EVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPN 68 (311)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~ 68 (311)
|+...++.|.|..|++++.+... +..|.|...|. ++++++|+|++|+|+|++.+ ...+++
T Consensus 82 C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~~~~C~y~i~Yg-d~~~~~G~l~~Dtv~~~~~~------~~~~~~ 154 (398)
T KOG1339|consen 82 CYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSPNSSCPYSIQYG-DGSSTSGYLATDTVTFGGTT------SLPVPN 154 (398)
T ss_pred ccccCCCccCccccccccccCCCCccccccccCcccCCcCceEEEeC-CCCceeEEEEEEEEEEcccc------cccccc
Confidence 44433444999999999887533 45677887764 77899999999999999742 236778
Q ss_pred EEEEeeecccccCCC--CCcceEEeeCCCCCChHHHHh-hccCCCcEEeccCCC-----CcceEEEcCCCCCC--CCcce
Q 040428 69 FILLCGSEFVLQGLA--NGVVGIAGLGRSKVALPSQLV-AFSLKRKFALYLSPF-----GNGVIIFSDGPYDL--NFDVS 138 (311)
Q Consensus 69 ~~FGc~~~~~~~~~~--~~~~GIlGLg~~~~Sl~~ql~-~~gl~~~FS~cL~~~-----~~G~l~fG~~d~~~--~~~~s 138 (311)
+.|||+..+.+. +. ...+||||||++++|+++|+. ..+..++|||||.+. .+|.|+||+.|... +.-..
T Consensus 155 ~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~ 233 (398)
T KOG1339|consen 155 QTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTY 233 (398)
T ss_pred EEEEeeecCccc-cccccccceEeecCCCCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEE
Confidence 999999999543 22 468999999999999999998 444456899999876 27999999999751 10112
Q ss_pred eeeeecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC
Q 040428 139 NTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP 218 (311)
Q Consensus 139 ~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~ 218 (311)
+|| ..++ ..+|+|+|++|+|+++. .+++..+.. +.+++||||||++|+||+++|++|+++|.+.+. . ....
T Consensus 234 tPl-~~~~--~~~y~v~l~~I~vgg~~-~~~~~~~~~---~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~-~~~~ 304 (398)
T KOG1339|consen 234 TPL-LSNP--STYYQVNLDGISVGGKR-PIGSSLFCT---DGGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V-VGTD 304 (398)
T ss_pred Eee-ccCC--CccEEEEEeEEEECCcc-CCCcceEec---CCCCEEEECCcceeeccHHHHHHHHHHHHhhee-c-cccC
Confidence 344 3221 15999999999999987 666555532 257899999999999999999999999998741 0 0011
Q ss_pred CCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE------ee--cCCC-------CC--C-cceeeccceeeceEEE
Q 040428 219 VAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR------FV--DGGV-------NP--Q-TSIVIGGCQLENNLLQ 280 (311)
Q Consensus 219 ~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~------~~--~~G~-------~~--~-~~~ILG~~~~r~~~vv 280 (311)
..+...||...... ..+|.|+|+|.++ +.|. ++ +.+. .. . ..||||++|||+++++
T Consensus 305 ~~~~~~C~~~~~~~-----~~~P~i~~~f~~g-~~~~l~~~~y~~~~~~~~~~Cl~~~~~~~~~~~~ilG~~~~~~~~~~ 378 (398)
T KOG1339|consen 305 GEYFVPCFSISTSG-----VKLPDITFHFGGG-AVFSLPPKNYLVEVSDGGGVCLAFFNGMDSGPLWILGDVFQQNYLVV 378 (398)
T ss_pred CceeeecccCCCCc-----ccCCcEEEEECCC-cEEEeCccceEEEECCCCCceeeEEecCCCCceEEEchHHhCCEEEE
Confidence 23456999875321 3589999999964 4443 22 2221 11 2 4799999999999999
Q ss_pred EECC-CCEEEEEecCCCCCCCCC
Q 040428 281 FDLA-TSRLDFSNSLLFEQTTCS 302 (311)
Q Consensus 281 fDl~-~~riGFa~~~~~~~~~C~ 302 (311)
||+. ++|||||+++ .+|+
T Consensus 379 ~D~~~~~riGfa~~~----~~c~ 397 (398)
T KOG1339|consen 379 FDLGENSRVGFAPAL----TNCS 397 (398)
T ss_pred EeCCCCCEEEecccc----ccCC
Confidence 9999 9999999544 6675
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=7.7e-35 Score=272.54 Aligned_cols=243 Identities=15% Similarity=0.155 Sum_probs=176.0
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+-|.|.+|++++. +.|.+...|. +| +++|.+++|+|+|++. .++++.|||++.+.+..+ ...
T Consensus 48 ~~~y~~~~SsT~~~-----~~~~~~i~Yg-~G-~~~G~~~~D~v~~g~~---------~~~~~~Fg~~~~~~~~~~~~~~ 111 (325)
T cd05490 48 HHKYNSSKSSTYVK-----NGTEFAIQYG-SG-SLSGYLSQDTVSIGGL---------QVEGQLFGEAVKQPGITFIAAK 111 (325)
T ss_pred cCcCCcccCcceee-----CCcEEEEEEC-Cc-EEEEEEeeeEEEECCE---------EEcCEEEEEEeeccCCccccee
Confidence 45699999999874 2466666653 44 6899999999999863 788999999988732222 235
Q ss_pred cceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
.+||||||++.+| +..+|.++++ +++||+||++. .+|+|+||++|.. ++.++|.........+|.
T Consensus 112 ~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~---~~~g~l~~~~~~~~~~w~ 188 (325)
T cd05490 112 FDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPK---YYTGDLHYVNVTRKAYWQ 188 (325)
T ss_pred eeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHH---HcCCceEEEEcCcceEEE
Confidence 7999999997665 4457776664 68999999854 3699999999864 444555211113467999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++..... ....+|||||||++++|+++|++|.+++.+. +...+ .....|...
T Consensus 189 v~l~~i~vg~~~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~~~~-~~~~~C~~~----- 249 (325)
T cd05490 189 IHMDQVDVGSGLTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV----PLIQG-EYMIDCEKI----- 249 (325)
T ss_pred EEeeEEEECCeeeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc----cccCC-CEEeccccc-----
Confidence 9999999998643211 1357999999999999999999999988542 11111 223467653
Q ss_pred cccCCCCCeEEEEEcCCceEEE----eec---CC-------CC-------CCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR----FVD---GG-------VN-------PQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~----~~~---~G-------~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
..+|+|+|+|++..+.+. ++. .+ +. ....||||+.|||++|+|||++++|||||
T Consensus 250 ----~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA 324 (325)
T cd05490 250 ----PTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFA 324 (325)
T ss_pred ----ccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeecc
Confidence 358999999976444433 221 11 10 13479999999999999999999999999
No 6
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=3.3e-34 Score=261.00 Aligned_cols=227 Identities=24% Similarity=0.397 Sum_probs=161.7
Q ss_pred cccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCCCCChHHHHhhcc
Q 040428 28 YVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLVAFS 107 (311)
Q Consensus 28 C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~~~g 107 (311)
|.+...|. |++.++|.+++|+|+|++.+ ..++++.|||+..+.+ ......+||||||+...|++.||..++
T Consensus 31 ~~~~~~Y~-dg~~~~G~~~~D~v~~g~~~-------~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~ 101 (265)
T cd05476 31 CSYEYSYG-DGSSTSGVLATETFTFGDSS-------VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG 101 (265)
T ss_pred CceEeEeC-CCceeeeeEEEEEEEecCCC-------CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc
Confidence 88888764 79999999999999998741 2578999999998843 223578999999999999999998555
Q ss_pred CCCcEEeccCCC----CcceEEEcCCCCC-CCCcceeeeeecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCc
Q 040428 108 LKRKFALYLSPF----GNGVIIFSDGPYD-LNFDVSNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDG 182 (311)
Q Consensus 108 l~~~FS~cL~~~----~~G~l~fG~~d~~-~~~~~s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~ 182 (311)
++||+||++. ..|+|+||++|.. .+.-...|+ ..++....+|.|+|++|+|+++.+.++.+.+.........
T Consensus 102 --~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~-~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ 178 (265)
T cd05476 102 --NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPL-VKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGG 178 (265)
T ss_pred --CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeec-ccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCc
Confidence 7999999862 5899999999963 111111233 3322346799999999999999987654433322234578
Q ss_pred EEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeec-CCCccccCCCCCeEEEEEc--CCceEEEeecC
Q 040428 183 AKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQ-DIGFTRIRPFVPQIDLVLQ--NKNVVWRFVDG 259 (311)
Q Consensus 183 ~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~-~~~~~~~~~~~P~i~~~f~--g~~~~l~~~~~ 259 (311)
+||||||++++||+++| .. .-+.+. +.. ..+|.-.+.+. ++..|+.++..
T Consensus 179 ai~DTGTs~~~lp~~~~-----------P~-----------i~~~f~~~~~-----~~i~~~~y~~~~~~~~~C~~~~~~ 231 (265)
T cd05476 179 TIIDSGTTLTYLPDPAY-----------PD-----------LTLHFDGGAD-----LELPPENYFVDVGEGVVCLAILSS 231 (265)
T ss_pred EEEeCCCcceEcCcccc-----------CC-----------EEEEECCCCE-----EEeCcccEEEECCCCCEEEEEecC
Confidence 99999999999999998 10 111111 000 11122111111 11345444432
Q ss_pred CCCCCcceeeccceeeceEEEEECCCCEEEEEecCCCCCCCC
Q 040428 260 GVNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTC 301 (311)
Q Consensus 260 G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~C 301 (311)
+ ..+.+|||+.|||++|++||++++||||| +++|
T Consensus 232 ~--~~~~~ilG~~fl~~~~~vFD~~~~~iGfa------~~~C 265 (265)
T cd05476 232 S--SGGVSILGNIQQQNFLVEYDLENSRLGFA------PADC 265 (265)
T ss_pred C--CCCcEEEChhhcccEEEEEECCCCEEeee------cCCC
Confidence 1 24689999999999999999999999999 8998
No 7
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=6e-34 Score=260.48 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=158.4
Q ss_pred CCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC--CCCcceEEeeCCCCCChHHH
Q 040428 25 EVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL--ANGVVGIAGLGRSKVALPSQ 102 (311)
Q Consensus 25 ~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~--~~~~~GIlGLg~~~~Sl~~q 102 (311)
.+.|.+...|. |++.++|.+++|+|+|+..++. ..++++.|||+..+.+... ....+||||||++++|+++|
T Consensus 37 ~c~c~~~i~Yg-d~~~~~G~~~~D~v~~~~~~~~-----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~q 110 (273)
T cd05475 37 GCQCDYEIEYA-DGGSSMGVLVTDIFSLKLTNGS-----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQ 110 (273)
T ss_pred CCcCccEeEeC-CCCceEEEEEEEEEEEeecCCC-----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHH
Confidence 35677777663 6889999999999999764321 3568899999987632211 24689999999999999999
Q ss_pred HhhccC-CCcEEeccCCCCcceEEEcCCCCCCC-CcceeeeeecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCC
Q 040428 103 LVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLN-FDVSNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGV 180 (311)
Q Consensus 103 l~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~-~~~s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~ 180 (311)
|.++++ +++||+||++..+|.|+||+.....+ ..+ .|| ..++ ...+|.|+|++|+||++.+.. +.
T Consensus 111 l~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~y-tpl-~~~~-~~~~y~v~l~~i~vg~~~~~~----------~~ 177 (273)
T cd05475 111 LASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTW-TPM-RRES-QKKHYSPGPASLLFNGQPTGG----------KG 177 (273)
T ss_pred HHhcCCcCceEEEEccCCCCeEEEECCCCCCCCCeee-ccc-ccCC-CCCeEEEeEeEEEECCEECcC----------CC
Confidence 985554 78999999876579999996543212 111 233 2221 257999999999999985321 23
Q ss_pred CcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEE--cCCceEEEeec
Q 040428 181 DGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVL--QNKNVVWRFVD 258 (311)
Q Consensus 181 ~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f--~g~~~~l~~~~ 258 (311)
.++||||||++++||+++| . + ...+||....... ...+|.-.+.+ ..+..++.++.
T Consensus 178 ~~~ivDTGTt~t~lp~~~y----------~---p------~i~~~f~~~~~~~---~~~l~~~~y~~~~~~~~~Cl~~~~ 235 (273)
T cd05475 178 LEVVFDSGSSYTYFNAQAY----------F---K------PLTLKFGKGWRTR---LLEIPPENYLIISEKGNVCLGILN 235 (273)
T ss_pred ceEEEECCCceEEcCCccc----------c---c------cEEEEECCCCcee---EEEeCCCceEEEcCCCCEEEEEec
Confidence 5799999999999999988 1 1 1234443210000 02233222222 12235665554
Q ss_pred CCC-CCCcceeeccceeeceEEEEECCCCEEEEEecCCCCCCCC
Q 040428 259 GGV-NPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTC 301 (311)
Q Consensus 259 ~G~-~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~C 301 (311)
... ...+.||||+.|||++|+|||++++||||| +++|
T Consensus 236 ~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa------~~~C 273 (273)
T cd05475 236 GSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWV------RSDC 273 (273)
T ss_pred CCCcCCCceEEECceEEEeeEEEEECcCCEeCcc------cCCC
Confidence 321 123579999999999999999999999999 8898
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=4.5e-34 Score=267.66 Aligned_cols=245 Identities=18% Similarity=0.262 Sum_probs=170.0
Q ss_pred CCCCCCCCCCCCCCCceeec-CC----------CCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEE
Q 040428 2 CPLPIKQPIAAQHSPILLML-KP----------AEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFI 70 (311)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~----------~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~ 70 (311)
|--+.++++.|..|++++.+ |. .+..|.+...|. +|+.++|.+++|+|+|++....+ ......++.
T Consensus 38 c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~-~gs~~~G~~~~D~v~lg~~~~~~--~~~~~~~~~ 114 (326)
T cd06096 38 CGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYS-EGSSISGFYFSDFVSFESYLNSN--SEKESFKKI 114 (326)
T ss_pred cCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEEC-CCCceeeEEEEEEEEeccCCCCc--cccccccEE
Confidence 43455689999999999875 32 224577777764 77789999999999998642100 001113578
Q ss_pred EEeeecccccCCCCCcceEEeeCCCCCC-hH---HHHhhcc-C---CCcEEeccCCCCcceEEEcCCCCCCCCcce----
Q 040428 71 LLCGSEFVLQGLANGVVGIAGLGRSKVA-LP---SQLVAFS-L---KRKFALYLSPFGNGVIIFSDGPYDLNFDVS---- 138 (311)
Q Consensus 71 FGc~~~~~~~~~~~~~~GIlGLg~~~~S-l~---~ql~~~g-l---~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s---- 138 (311)
|||+..+.+.......+||||||+++.+ +. .+|.+++ + .++||+||++. .|+|+||++|.. .+.
T Consensus 115 fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~---~~~~~~~ 190 (326)
T cd06096 115 FGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKD---YTVRNSS 190 (326)
T ss_pred eccCccccCcccccccceEEEccCCcccccCchhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChh---hhccccc
Confidence 9999987322123568999999998643 21 1222221 1 38999999986 899999999863 221
Q ss_pred ------eeeeecCC-CCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCC
Q 040428 139 ------NTASGFLG-EPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMP 211 (311)
Q Consensus 139 ------~~lt~~~~-~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~ 211 (311)
+.+. +.| ....+|.|.|++|+|+++..... ......+||||||++++||+++|++|.+++
T Consensus 191 ~~~~~~~~~~-~~p~~~~~~y~v~l~~i~vg~~~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~----- 257 (326)
T cd06096 191 IGNNKVSKIV-WTPITRKYYYYVKLEGLSVYGTTSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF----- 257 (326)
T ss_pred ccccccCCce-EEeccCCceEEEEEEEEEEccccccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----
Confidence 2331 111 23479999999999998861110 012467999999999999999999988766
Q ss_pred CccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE------eec--C-----CC-CCCcceeeccceeece
Q 040428 212 KVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR------FVD--G-----GV-NPQTSIVIGGCQLENN 277 (311)
Q Consensus 212 ~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~------~~~--~-----G~-~~~~~~ILG~~~~r~~ 277 (311)
|+|+|+|+++ ..+. ++. . +. ...+.+|||+.|||++
T Consensus 258 -----------------------------P~i~~~f~~g-~~~~i~p~~y~~~~~~~~c~~~~~~~~~~~ILG~~flr~~ 307 (326)
T cd06096 258 -----------------------------PTITIIFENN-LKIDWKPSSYLYKKESFWCKGGEKSVSNKPILGASFFKNK 307 (326)
T ss_pred -----------------------------CcEEEEEcCC-cEEEECHHHhccccCCceEEEEEecCCCceEEChHHhcCc
Confidence 5567777643 2332 111 1 11 1245799999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCCCCC
Q 040428 278 LLQFDLATSRLDFSNSLLFEQTTCS 302 (311)
Q Consensus 278 ~vvfDl~~~riGFa~~~~~~~~~C~ 302 (311)
|+|||++++||||| +++|+
T Consensus 308 y~vFD~~~~riGfa------~~~C~ 326 (326)
T cd06096 308 QIIFDLDNNRIGFV------ESNCP 326 (326)
T ss_pred EEEEECcCCEEeeE------cCCCC
Confidence 99999999999999 89995
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.9e-34 Score=266.97 Aligned_cols=243 Identities=14% Similarity=0.149 Sum_probs=177.9
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+.|.|.-|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+... ...
T Consensus 50 ~~~f~~~~Sst~~~~-----~~~~~~~yg-~g-s~~G~~~~D~v~ig~---------~~i~~~~fg~~~~~~~~~~~~~~ 113 (317)
T cd05478 50 HNRFNPRQSSTYQST-----GQPLSIQYG-TG-SMTGILGYDTVQVGG---------ISDTNQIFGLSETEPGSFFYYAP 113 (317)
T ss_pred cCcCCCCCCcceeeC-----CcEEEEEEC-Cc-eEEEEEeeeEEEECC---------EEECCEEEEEEEecCcccccccc
Confidence 467788888887653 255555543 44 589999999999986 3788999999987632111 135
Q ss_pred cceEEeeCCCCC------ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEE
Q 040428 86 VVGIAGLGRSKV------ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFI 154 (311)
Q Consensus 86 ~~GIlGLg~~~~------Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V 154 (311)
.+||||||+..+ +++.||.++++ +++||+||++. ..|+|+||++|.. ++.++|+ +.. ....+|.|
T Consensus 114 ~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~---~~~g~l~~~p~-~~~~~w~v 189 (317)
T cd05478 114 FDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPS---YYTGSLNWVPV-TAETYWQI 189 (317)
T ss_pred ccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHH---HccCceEEEEC-CCCcEEEE
Confidence 799999998754 47788887775 68999999876 4799999999864 4555663 111 34689999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++.+.... ...+||||||++++||+++|++|.+++.+... ........|...
T Consensus 190 ~l~~v~v~g~~~~~~~---------~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~------ 249 (317)
T cd05478 190 TVDSVTINGQVVACSG---------GCQAIVDTGTSLLVGPSSDIANIQSDIGASQN-----QNGEMVVNCSSI------ 249 (317)
T ss_pred EeeEEEECCEEEccCC---------CCEEEECCCchhhhCCHHHHHHHHHHhCCccc-----cCCcEEeCCcCc------
Confidence 9999999999875431 34799999999999999999999998854331 111112367643
Q ss_pred ccCCCCCeEEEEEcCCceEEE---ee-c-CC-----CC---CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 235 RIRPFVPQIDLVLQNKNVVWR---FV-D-GG-----VN---PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~~~~l~---~~-~-~G-----~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
..+|.|+|+|+|..+.++ ++ . .+ +. ..+.||||+.|||++|+|||++++|||||+
T Consensus 250 ---~~~P~~~f~f~g~~~~i~~~~y~~~~~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 250 ---SSMPDVVFTINGVQYPLPPSAYILQDQGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ---ccCCcEEEEECCEEEEECHHHheecCCCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 358999999976433333 22 1 11 11 135799999999999999999999999993
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=7.8e-34 Score=264.99 Aligned_cols=245 Identities=14% Similarity=0.181 Sum_probs=179.7
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+.|+|..|++++. ..|.+...|. +| ++.|.+++|+|+|++ ..++++.|||++...+..+ ...
T Consensus 43 ~~~f~~~~SsT~~~-----~~~~~~~~Yg-~G-s~~G~~~~D~i~~g~---------~~i~~~~Fg~~~~~~~~~~~~~~ 106 (318)
T cd05477 43 HTKFNPSQSSTYST-----NGETFSLQYG-SG-SLTGIFGYDTVTVQG---------IIITNQEFGLSETEPGTNFVYAQ 106 (318)
T ss_pred cCCCCcccCCCceE-----CCcEEEEEEC-Cc-EEEEEEEeeEEEECC---------EEEcCEEEEEEEecccccccccc
Confidence 46799999998864 3577777653 55 579999999999986 3789999999998632222 245
Q ss_pred cceEEeeCCCC------CChHHHHhhccC--CCcEEeccCCC---CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEE
Q 040428 86 VVGIAGLGRSK------VALPSQLVAFSL--KRKFALYLSPF---GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFI 154 (311)
Q Consensus 86 ~~GIlGLg~~~------~Sl~~ql~~~gl--~~~FS~cL~~~---~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V 154 (311)
.+||||||++. .+++.||.++|+ .++||+||++. ..|.|+||++|.. ++.++|+........+|.|
T Consensus 107 ~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~---~~~g~l~~~pv~~~~~w~v 183 (318)
T cd05477 107 FDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNN---LYTGQIYWTPVTSETYWQI 183 (318)
T ss_pred eeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHH---HcCCceEEEecCCceEEEE
Confidence 79999999853 467889986664 68999999875 4799999999864 4444452111134679999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++++.+.. ....+||||||++++||+++|++|.+++.+.... .. .....|...
T Consensus 184 ~l~~i~v~g~~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~----~~-~~~~~C~~~------ 244 (318)
T cd05477 184 GIQGFQINGQATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ----YG-QYVVNCNNI------ 244 (318)
T ss_pred EeeEEEECCEEecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc----CC-CEEEeCCcc------
Confidence 9999999998875321 1346999999999999999999999988654421 11 122356643
Q ss_pred ccCCCCCeEEEEEcCCceEEE---ee-c-C-----CCC--------CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 235 RIRPFVPQIDLVLQNKNVVWR---FV-D-G-----GVN--------PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~~~~l~---~~-~-~-----G~~--------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
..+|.++|+|++.++.++ ++ . . ++. ..+.+|||+.|||++|+|||++++|||||+
T Consensus 245 ---~~~p~l~~~f~g~~~~v~~~~y~~~~~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~ 317 (318)
T cd05477 245 ---QNLPTLTFTINGVSFPLPPSAYILQNNGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT 317 (318)
T ss_pred ---ccCCcEEEEECCEEEEECHHHeEecCCCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence 358999999976433333 22 1 1 111 124699999999999999999999999994
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.5e-34 Score=265.38 Aligned_cols=243 Identities=15% Similarity=0.190 Sum_probs=175.3
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+.+.|.+|++++. ..|.+...|. +| ++.|.+++|+|+|++ ..++++.|||+..+.+..+ ...
T Consensus 40 ~~~y~~~~SsT~~~-----~~~~~~i~Yg-~g-~~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~~~~~~ 103 (316)
T cd05486 40 HNRFQPSESSTYVS-----NGEAFSIQYG-TG-SLTGIIGIDQVTVEG---------ITVQNQQFAESVSEPGSTFQDSE 103 (316)
T ss_pred cceECCCCCccccc-----CCcEEEEEeC-Cc-EEEEEeeecEEEECC---------EEEcCEEEEEeeccCcccccccc
Confidence 34578888888753 3467766653 44 689999999999986 3788999999987632222 246
Q ss_pred cceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
.+||||||++.++ +..+|.++++ .++||+||++. ..|+|+||++|.. ++.++|+........+|.
T Consensus 104 ~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~---~~~g~l~~~pi~~~~~w~ 180 (316)
T cd05486 104 FDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTS---RFSGQLNWVPVTVQGYWQ 180 (316)
T ss_pred cceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHH---HcccceEEEECCCceEEE
Confidence 8999999997765 3566766664 67999999863 4799999999864 455566311113467999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++.+..+. ...+||||||++++||+++|++|.+++.+.. ..+ .....|...
T Consensus 181 v~l~~i~v~g~~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-----~~~-~~~~~C~~~----- 240 (316)
T cd05486 181 IQLDNIQVGGTVIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATA-----TDG-EYGVDCSTL----- 240 (316)
T ss_pred EEeeEEEEecceEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCcc-----cCC-cEEEecccc-----
Confidence 99999999998765321 2479999999999999999999988774321 111 122367643
Q ss_pred cccCCCCCeEEEEEcCCceEEE---e-ec----C-C-----CC-------CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR---F-VD----G-G-----VN-------PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~---~-~~----~-G-----~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
..+|+|+|+|+|..+.+. + +. + + +. ..+.||||+.|||++|+|||++++|||||+
T Consensus 241 ----~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 241 ----SLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred ----ccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 358999999976433333 1 11 1 1 10 124699999999999999999999999993
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.6e-33 Score=263.15 Aligned_cols=241 Identities=13% Similarity=0.165 Sum_probs=172.5
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..+.|..|+++.. ..|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 51 ~~y~~~~Sst~~~-----~~~~~~~~y~-~g-~~~G~~~~D~v~ig~---------~~~~~~~f~~a~~~~g~~~~~~~~ 114 (320)
T cd05488 51 SKYDSSASSTYKA-----NGTEFKIQYG-SG-SLEGFVSQDTLSIGD---------LTIKKQDFAEATSEPGLAFAFGKF 114 (320)
T ss_pred ceECCCCCcceee-----CCCEEEEEEC-Cc-eEEEEEEEeEEEECC---------EEECCEEEEEEecCCCcceeeeee
Confidence 4567777777653 3466666653 44 589999999999976 3788999999987632111 2467
Q ss_pred ceEEeeCCCCCChHH------HHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEEEE
Q 040428 87 VGIAGLGRSKVALPS------QLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGV 156 (311)
Q Consensus 87 ~GIlGLg~~~~Sl~~------ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V~l 156 (311)
+||||||++..|+.. +|.++|+ +++||+||.+. ..|.|+||++|.. ++.++++........+|.|.|
T Consensus 115 dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~w~v~l 191 (320)
T cd05488 115 DGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDES---RFTGKITWLPVRRKAYWEVEL 191 (320)
T ss_pred ceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHH---HcCCceEEEeCCcCcEEEEEe
Confidence 999999998776532 4555664 68999999875 5899999999864 444455211113457999999
Q ss_pred EEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcccc
Q 040428 157 ASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRI 236 (311)
Q Consensus 157 ~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 236 (311)
++|+||++.+... ...++||||||+++||++++++|.+++.+... ........|.+.
T Consensus 192 ~~i~vg~~~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-----~~~~~~~~C~~~-------- 248 (320)
T cd05488 192 EKIGLGDEELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-----WNGQYTVDCSKV-------- 248 (320)
T ss_pred CeEEECCEEeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-----cCCcEEeecccc--------
Confidence 9999999877543 24699999999999999999999888753321 111112356543
Q ss_pred CCCCCeEEEEEcCCceEEE----eec-CCC----------C--CCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 237 RPFVPQIDLVLQNKNVVWR----FVD-GGV----------N--PQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 237 ~~~~P~i~~~f~g~~~~l~----~~~-~G~----------~--~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
..+|.|+|+|++.++.++ +++ .|. . ..+.||||+.|||++|+|||++++|||||
T Consensus 249 -~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a 319 (320)
T cd05488 249 -DSLPDLTFNFDGYNFTLGPFDYTLEVSGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLA 319 (320)
T ss_pred -ccCCCEEEEECCEEEEECHHHheecCCCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeec
Confidence 358999999976443333 121 111 0 13479999999999999999999999999
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=7e-33 Score=259.91 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=173.8
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+-|+|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||+..+.+..+ ...
T Consensus 53 ~~~y~~~~Sst~~~~-----~~~~~i~Y~-~g-~~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~~~~~~ 116 (329)
T cd05485 53 HNKYDSTKSSTYKKN-----GTEFAIQYG-SG-SLSGFLSTDTVSVGG---------VSVKGQTFAEAINEPGLTFVAAK 116 (329)
T ss_pred CCeECCcCCCCeEEC-----CeEEEEEEC-Cc-eEEEEEecCcEEECC---------EEECCEEEEEEEecCCccccccc
Confidence 355788888887643 477766653 55 589999999999986 3788999999987632112 245
Q ss_pred cceEEeeCCCCCCh------HHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeee-ecCCCCCcce
Q 040428 86 VVGIAGLGRSKVAL------PSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEY 152 (311)
Q Consensus 86 ~~GIlGLg~~~~Sl------~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y 152 (311)
.+||||||++.+|+ ..||.++++ .++||+||.+. ..|+|+||++|.. ++.++|+ ... ....+|
T Consensus 117 ~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~~ 192 (329)
T cd05485 117 FDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPK---HYTGNFTYLPV-TRKGYW 192 (329)
T ss_pred cceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHH---HcccceEEEEc-CCceEE
Confidence 79999999987663 467776665 68999999864 3799999999864 4444552 111 346899
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIG 232 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (311)
.|.+++|+|+++.+.. ....+||||||++++||+++|++|.+++.+.. .........|...
T Consensus 193 ~v~~~~i~v~~~~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~-----~~~~~~~~~C~~~---- 253 (329)
T cd05485 193 QFKMDSVSVGEGEFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKP-----IIGGEYMVNCSAI---- 253 (329)
T ss_pred EEEeeEEEECCeeecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCcc-----ccCCcEEEecccc----
Confidence 9999999999987531 12469999999999999999999988875421 1111122356542
Q ss_pred ccccCCCCCeEEEEEcCCceEEE---ee---c-C--C-----CC-----C--CcceeeccceeeceEEEEECCCCEEEEE
Q 040428 233 FTRIRPFVPQIDLVLQNKNVVWR---FV---D-G--G-----VN-----P--QTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 233 ~~~~~~~~P~i~~~f~g~~~~l~---~~---~-~--G-----~~-----~--~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
..+|+|+|+|++..+.++ ++ . . + .. + .+.+|||+.|||++|+|||++++|||||
T Consensus 254 -----~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a 328 (329)
T cd05485 254 -----PSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFA 328 (329)
T ss_pred -----ccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeec
Confidence 357999999976433333 11 1 1 1 01 1 2469999999999999999999999998
No 14
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.3e-32 Score=268.76 Aligned_cols=246 Identities=15% Similarity=0.193 Sum_probs=177.7
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
+.-|+|..|+++..++.....+.... .|+.++.+|.+++|+|+|++ +.++++.|||++.+.+..+ ...
T Consensus 160 ~~~yd~s~SSTy~~~~~~~~~~~~~i--~YGsGs~~G~l~~DtV~ig~---------l~i~~q~FG~a~~~s~~~f~~~~ 228 (482)
T PTZ00165 160 HRKFDPKKSSTYTKLKLGDESAETYI--QYGTGECVLALGKDTVKIGG---------LKVKHQSIGLAIEESLHPFADLP 228 (482)
T ss_pred cCCCCccccCCcEecCCCCccceEEE--EeCCCcEEEEEEEEEEEECC---------EEEccEEEEEEEecccccccccc
Confidence 35589999999998764432212223 34566788999999999986 3789999999998732222 246
Q ss_pred cceEEeeCCCCC---------ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcc--eeeeeecCCCCCc
Q 040428 86 VVGIAGLGRSKV---------ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDV--SNTASGFLGEPSV 150 (311)
Q Consensus 86 ~~GIlGLg~~~~---------Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~--s~~lt~~~~~~~~ 150 (311)
.|||||||++.+ +++.+|.++|+ +++||+||++. .+|+|+||++|.. .+ .+.++........
T Consensus 229 ~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~---~~~~~g~i~~~Pv~~~~ 305 (482)
T PTZ00165 229 FDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPK---YTLEGHKIWWFPVISTD 305 (482)
T ss_pred ccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHH---HcCCCCceEEEEccccc
Confidence 899999999764 34567777776 68999999865 5799999999863 11 1234211113467
Q ss_pred ceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecC
Q 040428 151 EYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQD 230 (311)
Q Consensus 151 ~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~ 230 (311)
||.|.|++|+|+++.+..... ...+||||||+++++|+++|++|.+++... ..|.+.
T Consensus 306 yW~i~l~~i~vgg~~~~~~~~--------~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~-- 362 (482)
T PTZ00165 306 YWEIEVVDILIDGKSLGFCDR--------KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNK-- 362 (482)
T ss_pred eEEEEeCeEEECCEEeeecCC--------ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------cccccc--
Confidence 999999999999987765311 347999999999999999999998876321 258764
Q ss_pred CCccccCCCCCeEEEEEcCC---ceEEE------eec-----CC-------CC------C-CcceeeccceeeceEEEEE
Q 040428 231 IGFTRIRPFVPQIDLVLQNK---NVVWR------FVD-----GG-------VN------P-QTSIVIGGCQLENNLLQFD 282 (311)
Q Consensus 231 ~~~~~~~~~~P~i~~~f~g~---~~~l~------~~~-----~G-------~~------~-~~~~ILG~~~~r~~~vvfD 282 (311)
..+|+|+|+|.+. ++.+. +++ .+ .. + ++.||||+.|||++|+|||
T Consensus 363 -------~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD 435 (482)
T PTZ00165 363 -------DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFD 435 (482)
T ss_pred -------ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEe
Confidence 3589999999752 22332 121 01 10 1 3579999999999999999
Q ss_pred CCCCEEEEEecCCCCCCCCC
Q 040428 283 LATSRLDFSNSLLFEQTTCS 302 (311)
Q Consensus 283 l~~~riGFa~~~~~~~~~C~ 302 (311)
++++||||| ++.|+
T Consensus 436 ~~n~rIGfA------~a~~~ 449 (482)
T PTZ00165 436 RDHMMVGLV------PAKHD 449 (482)
T ss_pred CCCCEEEEE------eeccC
Confidence 999999999 55665
No 15
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.2e-32 Score=253.89 Aligned_cols=225 Identities=18% Similarity=0.218 Sum_probs=168.9
Q ss_pred ccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCCCC-----------
Q 040428 29 VALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKV----------- 97 (311)
Q Consensus 29 ~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~~~----------- 97 (311)
.+...|. +|+.++|.+++|+|+|++. .++++.|||++.. ...+||||||+.+.
T Consensus 31 ~~~~~Y~-~g~~~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~ 94 (295)
T cd05474 31 DFSISYG-DGTSASGTWGTDTVSIGGA---------TVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYP 94 (295)
T ss_pred eeEEEec-cCCcEEEEEEEEEEEECCe---------EecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCC
Confidence 3444443 6689999999999999863 6789999999985 24799999999876
Q ss_pred ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee----ecCCC--CCcceEEEEEEEEEcceEee
Q 040428 98 ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS----GFLGE--PSVEYFIGVASVNVNGKAVP 167 (311)
Q Consensus 98 Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt----~~~~~--~~~~Y~V~l~gIsvg~~~l~ 167 (311)
||+.||.++|+ +++||+||++. ..|.|+||++|.. ++.++++ ..++. ...+|.|.+++|+|+++.+.
T Consensus 95 s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~---~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~ 171 (295)
T cd05474 95 NFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTA---KYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGN 171 (295)
T ss_pred CHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccc---eeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCc
Confidence 68899986665 57999999874 5899999999864 4444442 11110 23799999999999998875
Q ss_pred cCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEE
Q 040428 168 LNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVL 247 (311)
Q Consensus 168 ~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f 247 (311)
.+.. .+.+.++|||||++++||.++|++|.+++.+.... . .......|+.. .. |.|+|+|
T Consensus 172 ~~~~------~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~--~--~~~~~~~C~~~---------~~-p~i~f~f 231 (295)
T cd05474 172 TTLL------SKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS--D--EGLYVVDCDAK---------DD-GSLTFNF 231 (295)
T ss_pred cccc------CCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC--C--CcEEEEeCCCC---------CC-CEEEEEE
Confidence 3211 23568999999999999999999999999766531 1 11234577753 23 9999999
Q ss_pred cCCceEEE----eec-------CCC-----CC--CcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 248 QNKNVVWR----FVD-------GGV-----NP--QTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 248 ~g~~~~l~----~~~-------~G~-----~~--~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
++..+.++ ++. .+. .+ .+.+|||+.|||++|++||.+++|||||+
T Consensus 232 ~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~ 294 (295)
T cd05474 232 GGATISVPLSDLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQ 294 (295)
T ss_pred CCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeec
Confidence 87544444 221 121 12 25799999999999999999999999994
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=5.5e-32 Score=257.17 Aligned_cols=265 Identities=18% Similarity=0.203 Sum_probs=180.5
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCC---
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLA--- 83 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~--- 83 (311)
+.-|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++.. ...+ .+.|+|.... ++.+
T Consensus 39 ~~~f~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~D~v~ig~~~------~~~~-~~~~~~~~~~--~~~~~~~ 102 (364)
T cd05473 39 HTYFHRELSSTYRDL-----GKGVTVPYT-QG-SWEGELGTDLVSIPKGP------NVTF-RANIAAITES--ENFFLNG 102 (364)
T ss_pred cccCCchhCcCcccC-----CceEEEEEC-cc-eEEEEEEEEEEEECCCC------ccce-EEeeEEEecc--ccceecc
Confidence 456888888888654 477777653 55 67999999999997521 1122 2356777655 2222
Q ss_pred CCcceEEeeCCCCCC--------hHHHHhhcc-CCCcEEeccCC---------C--CcceEEEcCCCCCCCCcceeeeee
Q 040428 84 NGVVGIAGLGRSKVA--------LPSQLVAFS-LKRKFALYLSP---------F--GNGVIIFSDGPYDLNFDVSNTASG 143 (311)
Q Consensus 84 ~~~~GIlGLg~~~~S--------l~~ql~~~g-l~~~FS~cL~~---------~--~~G~l~fG~~d~~~~~~~s~~lt~ 143 (311)
...+||||||++.++ +..+|.+++ ++++||+||.. . ..|+|+||++|.. ++.++|+.
T Consensus 103 ~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~---~~~g~l~~ 179 (364)
T cd05473 103 SNWEGILGLAYAELARPDSSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPS---LYKGDIWY 179 (364)
T ss_pred cccceeeeecccccccCCCCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHh---hcCCCceE
Confidence 257999999997653 344665343 35799996521 1 3799999999864 34444421
Q ss_pred cCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC---CC
Q 040428 144 FLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP---VA 220 (311)
Q Consensus 144 ~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~---~~ 220 (311)
.......+|.|.|++|+|+++.+.++...+. ...+||||||++++||+++|++|.+++.++... +..+. ..
T Consensus 180 ~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~~~~~~ 253 (364)
T cd05473 180 TPIREEWYYEVIILKLEVGGQSLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPDGFWLG 253 (364)
T ss_pred EecCcceeEEEEEEEEEECCEeccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCccccCc
Confidence 1003457999999999999998876543221 236999999999999999999999999987631 11111 11
Q ss_pred CCcceeeecCCCccccCCCCCeEEEEEcCC----ceEEE-----ee-c--C----C------CC-CCcceeeccceeece
Q 040428 221 PSRACFRLQDIGFTRIRPFVPQIDLVLQNK----NVVWR-----FV-D--G----G------VN-PQTSIVIGGCQLENN 277 (311)
Q Consensus 221 ~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~----~~~l~-----~~-~--~----G------~~-~~~~~ILG~~~~r~~ 277 (311)
....|++..... ...+|+|+|+|++. .+.+. ++ . . + .. ..+.+|||++|||++
T Consensus 254 ~~~~C~~~~~~~----~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~ 329 (364)
T cd05473 254 SQLACWQKGTTP----WEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGF 329 (364)
T ss_pred ceeecccccCch----HhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcce
Confidence 124798753211 13689999999863 23333 11 1 0 1 11 235699999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCCCCCCCcC
Q 040428 278 LLQFDLATSRLDFSNSLLFEQTTCSNFNF 306 (311)
Q Consensus 278 ~vvfDl~~~riGFa~~~~~~~~~C~~~~~ 306 (311)
|+|||++++||||| +++|.+.+-
T Consensus 330 yvvfD~~~~rIGfa------~~~C~~~~~ 352 (364)
T cd05473 330 YVVFDRANKRVGFA------VSTCAEHDG 352 (364)
T ss_pred EEEEECCCCEEeeE------ecccccccC
Confidence 99999999999999 899997664
No 17
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.6e-32 Score=250.10 Aligned_cols=227 Identities=16% Similarity=0.126 Sum_probs=167.0
Q ss_pred CCCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CC
Q 040428 6 IKQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-AN 84 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~ 84 (311)
.+..+.|..|++++.. ..|.+...|. +|+.++|.+++|+|+|++. .++++.|||++......+ ..
T Consensus 39 ~~~~y~~~~Sst~~~~----~~~~~~i~Y~-~G~~~~G~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~ 104 (278)
T cd06097 39 GHKLYDPSKSSTAKLL----PGATWSISYG-DGSSASGIVYTDTVSIGGV---------EVPNQAIELATAVSASFFSDT 104 (278)
T ss_pred cCCcCCCccCccceec----CCcEEEEEeC-CCCeEEEEEEEEEEEECCE---------EECCeEEEEEeecCccccccc
Confidence 3445788888877643 2366776663 7778999999999999863 788999999998632111 24
Q ss_pred CcceEEeeCCCCCC---------hHHHHhhccCCCcEEeccCCCCcceEEEcCCCCCCCCcceeeee--ecCCCCCcceE
Q 040428 85 GVVGIAGLGRSKVA---------LPSQLVAFSLKRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS--GFLGEPSVEYF 153 (311)
Q Consensus 85 ~~~GIlGLg~~~~S---------l~~ql~~~gl~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt--~~~~~~~~~Y~ 153 (311)
..+||||||+..++ +..+|..++.+++||+||.+...|+|+||++|.. ++.++|+ ... ....+|.
T Consensus 105 ~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~~~~Fs~~l~~~~~G~l~fGg~D~~---~~~g~l~~~pi~-~~~~~w~ 180 (278)
T cd06097 105 ASDGLLGLAFSSINTVQPPKQKTFFENALSSLDAPLFTADLRKAAPGFYTFGYIDES---KYKGEISWTPVD-NSSGFWQ 180 (278)
T ss_pred cccceeeeccccccccccCCCCCHHHHHHHhccCceEEEEecCCCCcEEEEeccChH---HcCCceEEEEcc-CCCcEEE
Confidence 68999999997654 3345554444689999998655899999999974 4455552 111 2267999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|++++|+|+++..... ....++|||||+++++|++++++|.+++.... +. . ..-+|..+...
T Consensus 181 v~l~~i~v~~~~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~--~~--~----~~~~~~~~C~~- 242 (278)
T cd06097 181 FTSTSYTVGGDAPWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAY--YD--S----EYGGWVFPCDT- 242 (278)
T ss_pred EEEeeEEECCcceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCc--cc--C----CCCEEEEECCC-
Confidence 9999999998743211 13579999999999999999999988773211 10 1 11234443321
Q ss_pred cccCCCCCeEEEEEcCCceEEEeecCCCCCCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWRFVDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~~~~~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
.+|+|+|+| .||||+.|||++|+|||++++|||||
T Consensus 243 -----~~P~i~f~~------------------~~ilGd~fl~~~y~vfD~~~~~ig~A 277 (278)
T cd06097 243 -----TLPDLSFAV------------------FSILGDVFLKAQYVVFDVGGPKLGFA 277 (278)
T ss_pred -----CCCCEEEEE------------------EEEEcchhhCceeEEEcCCCceeeec
Confidence 279999999 57999999999999999999999999
No 18
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=4.2e-32 Score=254.25 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=175.2
Q ss_pred CCCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CC
Q 040428 6 IKQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-AN 84 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~ 84 (311)
..+-+.|.+|+++.. ..|.+...|. +| +++|.+++|+|+|++. .+ ++.|||+.......+ ..
T Consensus 49 ~~~~y~~~~SsT~~~-----~~~~~~~~Yg-~g-~~~G~~~~D~v~~g~~---------~~-~~~fg~~~~~~~~~~~~~ 111 (326)
T cd05487 49 THNLYDASDSSTYKE-----NGTEFTIHYA-SG-TVKGFLSQDIVTVGGI---------PV-TQMFGEVTALPAIPFMLA 111 (326)
T ss_pred ccCcCCCCCCeeeeE-----CCEEEEEEeC-Cc-eEEEEEeeeEEEECCE---------Ee-eEEEEEEEeccCCcccee
Confidence 345688888888874 2477777653 55 5999999999999863 44 368999987521111 24
Q ss_pred CcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeeeecCCCCCcce
Q 040428 85 GVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEY 152 (311)
Q Consensus 85 ~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y 152 (311)
..+||||||++..| +..+|.++|+ .++||+||++. ..|+|+||++|.. ++.++++........+|
T Consensus 112 ~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~---~y~g~l~~~~~~~~~~w 188 (326)
T cd05487 112 KFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQ---HYQGDFHYINTSKTGFW 188 (326)
T ss_pred ecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChh---hccCceEEEECCcCceE
Confidence 68999999997654 3456665554 68999999864 4799999999975 55556631111356799
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIG 232 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (311)
.|.|++|+|+++.+.... ...+||||||++++||.++|++|.+++.+... .. .....|...
T Consensus 189 ~v~l~~i~vg~~~~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~-~y~~~C~~~---- 249 (326)
T cd05487 189 QIQMKGVSVGSSTLLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER-----LG-DYVVKCNEV---- 249 (326)
T ss_pred EEEecEEEECCEEEecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc-----CC-CEEEecccc----
Confidence 999999999998765432 24699999999999999999999988854321 11 123467653
Q ss_pred ccccCCCCCeEEEEEcCCceEEE----eec-----CC-----CC------C-CcceeeccceeeceEEEEECCCCEEEEE
Q 040428 233 FTRIRPFVPQIDLVLQNKNVVWR----FVD-----GG-----VN------P-QTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 233 ~~~~~~~~P~i~~~f~g~~~~l~----~~~-----~G-----~~------~-~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
..+|.|+|+|++..+.++ ++. .+ +. + .+.||||+.|||++|+|||++++|||||
T Consensus 250 -----~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA 324 (326)
T cd05487 250 -----PTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFA 324 (326)
T ss_pred -----CCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeee
Confidence 358999999966433333 111 11 11 1 2479999999999999999999999999
Q ss_pred e
Q 040428 292 N 292 (311)
Q Consensus 292 ~ 292 (311)
+
T Consensus 325 ~ 325 (326)
T cd05487 325 L 325 (326)
T ss_pred e
Confidence 4
No 19
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=4.7e-32 Score=253.07 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=166.6
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
.+-|.|..|++++... ..| ... |+.+.++|.+++|+|+|++. .++++.|||++.+....+ ...
T Consensus 51 ~~~y~~~~SsT~~~~~---~~~--~i~--Yg~G~~~G~~~~D~v~ig~~---------~v~~~~f~~~~~~~~~~~~~~~ 114 (317)
T cd06098 51 HSKYKSSKSSTYKKNG---TSA--SIQ--YGTGSISGFFSQDSVTVGDL---------VVKNQVFIEATKEPGLTFLLAK 114 (317)
T ss_pred cCcCCcccCCCcccCC---CEE--EEE--cCCceEEEEEEeeEEEECCE---------EECCEEEEEEEecCCccccccc
Confidence 4568888888876432 222 233 45556899999999999863 788999999997632222 246
Q ss_pred cceEEeeCCCCCCh------HHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVAL------PSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~Sl------~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
.+||||||+...|. ..+|.++|+ +++||+||.+. ..|+|+||++|.. ++.++++........+|.
T Consensus 115 ~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~pv~~~~~w~ 191 (317)
T cd06098 115 FDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPK---HFKGEHTYVPVTRKGYWQ 191 (317)
T ss_pred cceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChh---hcccceEEEecCcCcEEE
Confidence 89999999976553 446666665 67999999753 4799999999864 455555211103457999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.+++|+|+++.+..... ...+||||||++++||++++++|. ....|+..
T Consensus 192 v~l~~i~v~g~~~~~~~~--------~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~----- 241 (317)
T cd06098 192 FEMGDVLIGGKSTGFCAG--------GCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL----- 241 (317)
T ss_pred EEeCeEEECCEEeeecCC--------CcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc-----
Confidence 999999999988764321 246999999999999999876653 12358764
Q ss_pred cccCCCCCeEEEEEcCCceEEE---e-ec--C--------CCC-------CCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR---F-VD--G--------GVN-------PQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~---~-~~--~--------G~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
..+|+|+|+|++..+.+. + ++ . ++. ..+.||||+.|||++|+|||++++|||||
T Consensus 242 ----~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA 316 (317)
T cd06098 242 ----SSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFA 316 (317)
T ss_pred ----ccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeec
Confidence 257999999976444443 2 11 1 110 12469999999999999999999999999
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.97 E-value=2.2e-30 Score=236.14 Aligned_cols=214 Identities=21% Similarity=0.317 Sum_probs=164.2
Q ss_pred CCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCCC------CC
Q 040428 25 EVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSK------VA 98 (311)
Q Consensus 25 ~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~~------~S 98 (311)
+..|.+...| +++.++|.+++|+|+|++. .++++.|||++...........+||||||+.. .+
T Consensus 55 ~~~~~~~~~Y--~~g~~~g~~~~D~v~~~~~---------~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 55 DTGCTFSITY--GDGSVTGGLGTDTVTIGGL---------TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred cCCCEEEEEE--CCCeEEEEEEEeEEEECCE---------EEeceEEEEEeccCCcccccccceEeecCCcccccccCCC
Confidence 4567776665 4468899999999999874 57899999999984212235789999999988 78
Q ss_pred hHHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeee--ecCCCCCcceEEEEEEEEEcceEeecCc
Q 040428 99 LPSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTAS--GFLGEPSVEYFIGVASVNVNGKAVPLNK 170 (311)
Q Consensus 99 l~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt--~~~~~~~~~Y~V~l~gIsvg~~~l~~~~ 170 (311)
++.||.++++ .++||+||.+. ..|.|+||++|.. .+.++++ ...+....+|.|.|++|+|++......
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~---~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~- 199 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPS---KYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISS- 199 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCcc---ccCCceEEEecCCCCCCEEEEEeCeEEECCceeeec-
Confidence 9999996653 79999999873 6899999999974 2333441 111113789999999999999751111
Q ss_pred ccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCC
Q 040428 171 TLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNK 250 (311)
Q Consensus 171 ~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~ 250 (311)
.....++|||||++++||+++|++|.+++.+.... ...|+...... ...+|.|+|+|
T Consensus 200 -------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~----~~~~p~i~f~f--- 256 (283)
T cd05471 200 -------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSP----CDTLPDITFTF--- 256 (283)
T ss_pred -------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcc----cCcCCCEEEEE---
Confidence 22468999999999999999999999999876641 12333332221 24789999999
Q ss_pred ceEEEeecCCCCCCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 251 NVVWRFVDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 251 ~~~l~~~~~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
.+|||+.|||++|++||++++|||||
T Consensus 257 ---------------~~ilG~~fl~~~y~vfD~~~~~igfa 282 (283)
T cd05471 257 ---------------LWILGDVFLRNYYTVFDLDNNRIGFA 282 (283)
T ss_pred ---------------EEEccHhhhhheEEEEeCCCCEEeec
Confidence 56999999999999999999999998
No 21
>PTZ00147 plasmepsin-1; Provisional
Probab=99.97 E-value=3.8e-30 Score=249.68 Aligned_cols=241 Identities=13% Similarity=0.156 Sum_probs=170.0
Q ss_pred CCCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccC-C--
Q 040428 6 IKQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQG-L-- 82 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~-~-- 82 (311)
.++-|.|..|+++... .|.+...| +.++++|.+++|+|+|++. .++ .+|+|+.+..+.. .
T Consensus 178 ~~~~yd~s~SsT~~~~-----~~~f~i~Y--g~GsvsG~~~~DtVtiG~~---------~v~-~qF~~~~~~~~f~~~~~ 240 (453)
T PTZ00147 178 TKNLYDSSKSKTYEKD-----GTKVEMNY--VSGTVSGFFSKDLVTIGNL---------SVP-YKFIEVTDTNGFEPFYT 240 (453)
T ss_pred CCCccCCccCcceEEC-----CCEEEEEe--CCCCEEEEEEEEEEEECCE---------EEE-EEEEEEEeccCcccccc
Confidence 3466888888887543 35566555 3446899999999999863 566 5899988763211 1
Q ss_pred CCCcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcce
Q 040428 83 ANGVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEY 152 (311)
Q Consensus 83 ~~~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y 152 (311)
....+||||||++.+| ++.+|..+++ .++||+||++. ..|+|+||++|.. ++.++|+........+|
T Consensus 241 ~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~---ky~G~l~y~pl~~~~~W 317 (453)
T PTZ00147 241 ESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEER---FYEGPLTYEKLNHDLYW 317 (453)
T ss_pred cccccceecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChh---hcCCceEEEEcCCCceE
Confidence 1358999999998765 4557776664 67999999864 5799999999974 45566631111345799
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIG 232 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (311)
.|.++ +.+++... ....+||||||+++++|+++++++.+++.+.. .+.. ......|+.
T Consensus 318 ~V~l~-~~vg~~~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~--~~~~--~~y~~~C~~----- 375 (453)
T PTZ00147 318 QVDLD-VHFGNVSS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFK--VPFL--PLYVTTCNN----- 375 (453)
T ss_pred EEEEE-EEECCEec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCee--cCCC--CeEEEeCCC-----
Confidence 99998 47766421 13579999999999999999999998885421 1111 112346764
Q ss_pred ccccCCCCCeEEEEEcCCceEEE---ee----cC--C-----CC----CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 233 FTRIRPFVPQIDLVLQNKNVVWR---FV----DG--G-----VN----PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 233 ~~~~~~~~P~i~~~f~g~~~~l~---~~----~~--G-----~~----~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+++|+|++..+.++ ++ +. + +. ..+.||||+.|||++|+|||++++|||||++
T Consensus 376 -----~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a 449 (453)
T PTZ00147 376 -----TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALA 449 (453)
T ss_pred -----CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEe
Confidence 257999999986544444 22 11 1 11 1347999999999999999999999999964
No 22
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.97 E-value=7.3e-30 Score=247.33 Aligned_cols=240 Identities=11% Similarity=0.129 Sum_probs=168.1
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccC--C-C
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQG--L-A 83 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~--~-~ 83 (311)
++-+.|..|+++.. ..|.+...| ++++++|.+++|+|+|++. .++ .+|||+......+ + .
T Consensus 178 ~~~yd~s~SsT~~~-----~~~~~~i~Y--G~Gsv~G~~~~Dtv~iG~~---------~~~-~~f~~~~~~~~~~~~~~~ 240 (450)
T PTZ00013 178 KNLYDSSKSKSYEK-----DGTKVDITY--GSGTVKGFFSKDLVTLGHL---------SMP-YKFIEVTDTDDLEPIYSS 240 (450)
T ss_pred CCCccCccCccccc-----CCcEEEEEE--CCceEEEEEEEEEEEECCE---------EEc-cEEEEEEeccccccceec
Confidence 45578888887753 236666654 4446999999999999863 565 5899988752111 1 1
Q ss_pred CCcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 84 NGVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 84 ~~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
...+||||||++.++ ++.||.++++ .++||+||++. ..|.|+||++|.. ++.++|+........+|.
T Consensus 241 ~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~---~y~G~L~y~pv~~~~yW~ 317 (450)
T PTZ00013 241 SEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEK---FYEGNITYEKLNHDLYWQ 317 (450)
T ss_pred ccccceecccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCcc---ccccceEEEEcCcCceEE
Confidence 357999999998654 5668876664 67999999864 5899999999975 556666311113457999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.++ +.+|...+. ...+|||||||++++|+++++++.+++.... .+. .......|+.
T Consensus 318 I~l~-v~~G~~~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~--~~~--~~~y~~~C~~------ 374 (450)
T PTZ00013 318 IDLD-VHFGKQTMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIK--VPF--LPFYVTTCDN------ 374 (450)
T ss_pred EEEE-EEECceecc------------ccceEECCCCccccCCHHHHHHHHHHhCCee--cCC--CCeEEeecCC------
Confidence 9998 666644321 3469999999999999999999888775321 111 1112346754
Q ss_pred cccCCCCCeEEEEEcCCceEEE---ee------cCCC-----C----CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR---FV------DGGV-----N----PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~---~~------~~G~-----~----~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|++..+.++ ++ +.+. . ..+.||||+.|||++|+|||++++|||||++
T Consensus 375 ----~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a 448 (450)
T PTZ00013 375 ----KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIA 448 (450)
T ss_pred ----CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEe
Confidence 257999999987444443 21 1111 1 1357999999999999999999999999954
No 23
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=3.7e-27 Score=199.35 Aligned_cols=140 Identities=29% Similarity=0.536 Sum_probs=103.5
Q ss_pred ceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCc--cc-cCCCCCCcceee
Q 040428 151 EYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKV--TR-VSPVAPSRACFR 227 (311)
Q Consensus 151 ~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~--~~-~~~~~~~~~C~~ 227 (311)
+|+|+|++|+||++++++++..|++ +++.+++||||||++|+||+++|++|+++|.+++... ++ ......+++||+
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~ 79 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYN 79 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEE
T ss_pred CccEEEEEEEECCEEecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceee
Confidence 6999999999999999999998877 6778999999999999999999999999999998632 23 233467789999
Q ss_pred ecCCCccccCCCCCeEEEEEcCCceEEE------ee--cCCC----------CCCcceeeccceeeceEEEEECCCCEEE
Q 040428 228 LQDIGFTRIRPFVPQIDLVLQNKNVVWR------FV--DGGV----------NPQTSIVIGGCQLENNLLQFDLATSRLD 289 (311)
Q Consensus 228 ~~~~~~~~~~~~~P~i~~~f~g~~~~l~------~~--~~G~----------~~~~~~ILG~~~~r~~~vvfDl~~~riG 289 (311)
.+.....+....+|+|+|||+++ +.|. ++ +.+. ...+.+|||+.+|++++|+||++++|||
T Consensus 80 ~~~~~~~~~~~~~P~i~l~F~~g-a~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 80 LSSFGVNRDWAKFPTITLHFEGG-ADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GGCS-EETTEESS--EEEEETTS-EEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred ccccccccccccCCeEEEEEeCC-cceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87631112346899999999986 4554 22 2221 1356899999999999999999999999
Q ss_pred EEe
Q 040428 290 FSN 292 (311)
Q Consensus 290 Fa~ 292 (311)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 984
No 24
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.94 E-value=8.6e-26 Score=209.45 Aligned_cols=220 Identities=22% Similarity=0.322 Sum_probs=160.8
Q ss_pred cCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccC-CCCCcceEEeeCCCC-------CChHHHHhhcc
Q 040428 36 ISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQG-LANGVVGIAGLGRSK-------VALPSQLVAFS 107 (311)
Q Consensus 36 ~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~-~~~~~~GIlGLg~~~-------~Sl~~ql~~~g 107 (311)
|+.+.++|.+++|+|+|++. .+.++.||++....+.. .....+||||||+.. .+++.+|.++|
T Consensus 64 y~~g~~~G~~~~D~v~ig~~---------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 64 YGDGSVSGNLVSDTVSIGGL---------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp ETTEEEEEEEEEEEEEETTE---------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred ccCcccccccccceEeeeec---------cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 44555999999999999873 77889999999952211 135689999999743 46778888666
Q ss_pred C--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCc
Q 040428 108 L--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDG 182 (311)
Q Consensus 108 l--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~ 182 (311)
+ .++||+||.+. ..|.|+||++|.. ++.++++ ... ....+|.|.+++|+++++...... ...
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~---~~~g~~~~~~~-~~~~~w~v~~~~i~i~~~~~~~~~---------~~~ 201 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPS---KYDGDLVWVPL-VSSGYWSVPLDSISIGGESVFSSS---------GQQ 201 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGG---GEESEEEEEEB-SSTTTTEEEEEEEEETTEEEEEEE---------EEE
T ss_pred cccccccceeeeecccccchheeeccccc---cccCceeccCc-cccccccccccccccccccccccc---------cee
Confidence 4 78999999887 3699999999875 5666663 221 367899999999999998322211 135
Q ss_pred EEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE----ee-
Q 040428 183 AKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR----FV- 257 (311)
Q Consensus 183 ~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~----~~- 257 (311)
++|||||++++||.+++++|.+++...... ......|-.. ..+|.++|.|.+..+.+. +.
T Consensus 202 ~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~------~~~~~~c~~~---------~~~p~l~f~~~~~~~~i~~~~~~~~ 266 (317)
T PF00026_consen 202 AILDTGTSYIYLPRSIFDAIIKALGGSYSD------GVYSVPCNST---------DSLPDLTFTFGGVTFTIPPSDYIFK 266 (317)
T ss_dssp EEEETTBSSEEEEHHHHHHHHHHHTTEEEC------SEEEEETTGG---------GGSEEEEEEETTEEEEEEHHHHEEE
T ss_pred eecccccccccccchhhHHHHhhhcccccc------eeEEEecccc---------cccceEEEeeCCEEEEecchHhccc
Confidence 999999999999999999999999755431 1111234221 357999999986545554 11
Q ss_pred --cCC-------C------CCCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 258 --DGG-------V------NPQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 258 --~~G-------~------~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
+.. + .....+|||..|||++|++||.|++|||||+
T Consensus 267 ~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~ 316 (317)
T PF00026_consen 267 IEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ 316 (317)
T ss_dssp ESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred ccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence 111 0 1246799999999999999999999999995
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.78 E-value=1.4e-18 Score=147.33 Aligned_cols=115 Identities=28% Similarity=0.421 Sum_probs=86.3
Q ss_pred CCCCCCCCCCCceeecCCC-----------------CCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCc
Q 040428 6 IKQPIAAQHSPILLMLKPA-----------------EVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPN 68 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~-----------------~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~ 68 (311)
..++|.|..|++++.+... +..|.|...|. +++.++|.+++|+|+|+..++. ...+++
T Consensus 30 ~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~y~~~y~-~~s~~~G~l~~D~~~~~~~~~~----~~~~~~ 104 (164)
T PF14543_consen 30 PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCPYSQSYG-DGSSSSGFLASDTLTFGSSSGG----SNSVPD 104 (164)
T ss_dssp ----STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEEEEEEET-TTEEEEEEEEEEEEEEEEESSS----SEEEEE
T ss_pred CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcccceeecC-CCccccCceEEEEEEecCCCCC----Cceeee
Confidence 4578999999999887332 23577777775 7999999999999999986422 257889
Q ss_pred EEEEeeecccccCCCCCcceEEeeCCCCCChHHHHhhccCCCcEEeccCC-C--CcceEEEcC
Q 040428 69 FILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLVAFSLKRKFALYLSP-F--GNGVIIFSD 128 (311)
Q Consensus 69 ~~FGc~~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~~~gl~~~FS~cL~~-~--~~G~l~fG~ 128 (311)
+.|||++.+ .+++..++||||||++++||++||++. ..++|||||++ . ..|+|+||+
T Consensus 105 ~~FGC~~~~--~g~~~~~~GilGLg~~~~Sl~sQl~~~-~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 105 FIFGCATSN--SGLFYGADGILGLGRGPLSLPSQLASS-SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEEEEE-GG--GTSSTTEEEEEE-SSSTTSHHHHHHHH---SEEEEEB-S-SSSSEEEEEECS
T ss_pred EEEEeeecc--ccCCcCCCcccccCCCcccHHHHHHHh-cCCeEEEECCCCCCCCCEEEEeCc
Confidence 999999999 466668999999999999999999733 46999999998 2 799999996
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=98.27 E-value=3.1e-06 Score=66.15 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCC-CCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 8 QPI-AAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 8 ~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
+++ .|.-|++++ ...|.+...|. +| .+.|.+++|+|+|++. .++++.|||++.+.+..+ +..
T Consensus 39 ~~~~~~~~sst~~-----~~~~~~~~~Y~-~g-~~~g~~~~D~v~ig~~---------~~~~~~fg~~~~~~~~~~~~~~ 102 (109)
T cd05470 39 SSYDDPSASSTYS-----DNGCTFSITYG-TG-SLSGGLSTDTVSIGDI---------EVVGQAFGCATDEPGATFLPAL 102 (109)
T ss_pred cccCCcCCCCCCC-----CCCcEEEEEeC-CC-eEEEEEEEEEEEECCE---------EECCEEEEEEEecCCccccccc
Confidence 344 555554433 34587777653 54 6789999999999863 688999999999843211 246
Q ss_pred cceEEee
Q 040428 86 VVGIAGL 92 (311)
Q Consensus 86 ~~GIlGL 92 (311)
.+|||||
T Consensus 103 ~~GilGL 109 (109)
T cd05470 103 FDGILGL 109 (109)
T ss_pred cccccCC
Confidence 8999997
No 27
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.88 E-value=0.24 Score=39.72 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=53.4
Q ss_pred cEEEecCCcccccCHHHHHHHHHHHHhhCCCcc-ccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE--eec
Q 040428 182 GAKINTVNPYTVLETSIYKAFVQAFANAMPKVT-RVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR--FVD 258 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~--~~~ 258 (311)
.++||||++.++++++..+++-=...... .+. .+.+... ..|. .......+.+++-..... .++
T Consensus 29 ~~LvDTGAs~s~Is~~~a~~lgl~~~~~~-~~~~~~~g~g~-~~~~-----------g~~~~~~l~i~~~~~~~~~~Vl~ 95 (124)
T cd05479 29 KAFVDSGAQMTIMSKACAEKCGLMRLIDK-RFQGIAKGVGT-QKIL-----------GRIHLAQVKIGNLFLPCSFTVLE 95 (124)
T ss_pred EEEEeCCCceEEeCHHHHHHcCCccccCc-ceEEEEecCCC-cEEE-----------eEEEEEEEEECCEEeeeEEEEEC
Confidence 38999999999999999876432111000 000 1111111 0110 122455666665322212 223
Q ss_pred CCCCCCcceeeccceeeceEEEEECCCCEEEE
Q 040428 259 GGVNPQTSIVIGGCQLENNLLQFDLATSRLDF 290 (311)
Q Consensus 259 ~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGF 290 (311)
.+ ....|||.-||+.+.++-|.++++|-|
T Consensus 96 ~~---~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 96 DD---DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CC---CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 22 235699999999999999999998854
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=88.55 E-value=0.97 Score=36.08 Aligned_cols=37 Identities=16% Similarity=0.181 Sum_probs=28.8
Q ss_pred CCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHH
Q 040428 148 PSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 148 ~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 202 (311)
...+|+|. +.|+|+.+ .++||||.+.+.+++++.+++
T Consensus 8 ~~g~~~v~---~~InG~~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 44566555 67788753 389999999999999988765
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.44 E-value=0.74 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=19.0
Q ss_pred cEEEecCCcccccCHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l 202 (311)
.++||||.+.+.+.+++++++
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 389999999999999999876
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=86.65 E-value=1.6 Score=35.57 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=57.3
Q ss_pred cEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE--eecC
Q 040428 182 GAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR--FVDG 259 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~--~~~~ 259 (311)
-++||||+|-.++..+....+.-.+.+ +++ ..+-...+... ......+.+.+.+++-..... +++-
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~----l~~-------~~~V~~~g~~~-~~~~~~~~~~~~i~g~~~~~dl~vl~l 101 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEP----LPR-------PIVVSAPGGSI-NCEGVCPDVPLSIQGHEFVVDLLVLDL 101 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEE----ccC-------eeEEecccccc-cccceeeeEEEEECCeEEEeeeEEecc
Confidence 389999999999998876543321111 100 01111100000 001235677888876433222 2332
Q ss_pred CCCCCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 260 GVNPQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 260 G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
+ .-..|||--+|+.+..+-|..+++|-|..
T Consensus 102 ~---~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 102 G---GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred c---ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 2 23579999999999999999999999983
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=85.21 E-value=1.2 Score=33.31 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.9
Q ss_pred EEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHH
Q 040428 158 SVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFV 203 (311)
Q Consensus 158 gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~ 203 (311)
.+.|+|+.+. +.||||++.+.++++.+..+-
T Consensus 4 ~~~Ing~~i~---------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK---------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE---------------EEEcCCcceEEeCHHHHHHhC
Confidence 3678888763 889999999999999998653
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=85.21 E-value=1.5 Score=31.48 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=19.3
Q ss_pred cEEEecCCcccccCHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l 202 (311)
.++||||.+-++++.++.+.|
T Consensus 21 ~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 21 KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEEeCCCcceecCHHHHHHh
Confidence 389999999999999999876
No 33
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=80.74 E-value=3.3 Score=30.50 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=18.9
Q ss_pred cEEEecCCcccccCHHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAFV 203 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l~ 203 (311)
.++||||++.+.++.+..+.+.
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l~ 36 (96)
T cd05483 15 RFLLDTGASTTVISEELAERLG 36 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHcC
Confidence 3899999999999999877653
No 34
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.79 E-value=3.6 Score=30.44 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=19.0
Q ss_pred cEEEecCCcccccCHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l 202 (311)
.++||||.+.|.++++..+.+
T Consensus 11 ~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 11 VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEEECCCCeEEECHHHhhhc
Confidence 389999999999999999875
No 35
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=65.00 E-value=4.8 Score=30.34 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.2
Q ss_pred cEEEecCCcccccCHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYK 200 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~ 200 (311)
.++||||+..+.++++.+.
T Consensus 18 ~~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 18 KALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEEETTBSSEEESSGGSS
T ss_pred EEEEecCCCcceecccccc
Confidence 3899999999999987553
No 36
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=62.00 E-value=10 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=23.2
Q ss_pred EEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHH
Q 040428 159 VNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 159 Isvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l 202 (311)
++++|+.+. ++||||+-.|.++.+.++++
T Consensus 29 ~~ing~~vk---------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK---------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE---------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE---------------EEEeCCCCccccCHHHHHHc
Confidence 678888763 89999999999999999873
No 37
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=61.43 E-value=9.3 Score=28.87 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.6
Q ss_pred cEEEecCCcccccCHHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAFV 203 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l~ 203 (311)
.+-||||.+.+.||...|+.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4889999999999999998765
No 38
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=54.80 E-value=28 Score=30.48 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=29.8
Q ss_pred CCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHH
Q 040428 147 EPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKA 201 (311)
Q Consensus 147 ~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~ 201 (311)
....||.++ ..|||+.+. .+||||.|...|+++..+.
T Consensus 101 ~~~GHF~a~---~~VNGk~v~---------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKVD---------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred cCCCcEEEE---EEECCEEEE---------------EEEecCcceeecCHHHHHH
Confidence 456777665 689998864 7999999999999987764
No 39
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=53.34 E-value=8.9 Score=30.72 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=48.8
Q ss_pred EEEecCCc-ccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEEeecCCC
Q 040428 183 AKINTVNP-YTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWRFVDGGV 261 (311)
Q Consensus 183 ~iiDSGTt-~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~~~~~G~ 261 (311)
.+||||-+ ++.+|+++++++-.-.-+. . .......-|+.. .+-....+++|.+ ...++....
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~~~~~~~---~---~~~~a~~~~v~t----------~V~~~~iki~g~e-~~~~Vl~s~ 91 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLGLPLFST---I---RIVLADGGVVKT----------SVALATIKIDGVE-KVAFVLASD 91 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcCCCccCC---h---hhhhhcCCEEEE----------EEEEEEEEECCEE-EEEEEEccC
Confidence 48999999 9999999998743211100 0 001111235543 2334567777732 122332111
Q ss_pred CCCcceeeccceeeceEEEEECCCCEE
Q 040428 262 NPQTSIVIGGCQLENNLLQFDLATSRL 288 (311)
Q Consensus 262 ~~~~~~ILG~~~~r~~~vvfDl~~~ri 288 (311)
..+..+||-..|+-.-.++|....++
T Consensus 92 -~~~~~liG~~~lk~l~~~vn~~~g~L 117 (125)
T COG5550 92 -NLPEPLIGVNLLKLLGLVVNPKTGKL 117 (125)
T ss_pred -CCcccchhhhhhhhccEEEcCCcceE
Confidence 11233889888888888888755443
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=47.44 E-value=14 Score=28.68 Aligned_cols=89 Identities=13% Similarity=0.018 Sum_probs=48.2
Q ss_pred cEEEecCCcccc-cCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEEeecCC
Q 040428 182 GAKINTVNPYTV-LETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWRFVDGG 260 (311)
Q Consensus 182 ~~iiDSGTt~t~-lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~~~~~G 260 (311)
.++||||.|-.. +|.++++.+-=...... ++.-..+ .+... .+-..++.++|.......+..+
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~lgl~~~~~~----~~~tA~G--~~~~~----------~v~~~~v~igg~~~~~~v~~~~ 81 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKLGLPELDQR----RVYLADG--REVLT----------DVAKASIIINGLEIDAFVESLG 81 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHcCCCcccCc----EEEecCC--cEEEE----------EEEEEEEEECCEEEEEEEEecC
Confidence 589999999876 99999886421110000 0000000 11111 1124455565532211122111
Q ss_pred CCCCcceeeccceeeceEEEEECCCCEE
Q 040428 261 VNPQTSIVIGGCQLENNLLQFDLATSRL 288 (311)
Q Consensus 261 ~~~~~~~ILG~~~~r~~~vvfDl~~~ri 288 (311)
. .+..+||..+|+.+.++-|..++++
T Consensus 82 ~--~~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 82 Y--VDEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred C--CCccEecHHHHhhCCEEEehhhCcC
Confidence 1 1367999999999999999887753
No 41
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=30.84 E-value=69 Score=24.81 Aligned_cols=85 Identities=12% Similarity=0.179 Sum_probs=45.8
Q ss_pred EEEecCCcccccCHHHHHHH--HHHHHh-hCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE----
Q 040428 183 AKINTVNPYTVLETSIYKAF--VQAFAN-AMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR---- 255 (311)
Q Consensus 183 ~iiDSGTt~t~lp~~~y~~l--~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~---- 255 (311)
++||||+-.|.+.++-.++. .+.+.. ...+.. .++.. --+.- -.+=...+.+++ ..++
T Consensus 12 AfVDsGaQ~timS~~caercgL~r~v~~~r~~g~A--~gvgt---~~kii--------Grih~~~ikig~--~~~~CSft 76 (103)
T cd05480 12 ALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEA--PSLPT---SVKVI--------GQIERLVLQLGQ--LTVECSAQ 76 (103)
T ss_pred EEEecCCchhhcCHHHHHHcChHhhhhhccccccc--cCCCc---ceeEe--------eEEEEEEEEeCC--EEeeEEEE
Confidence 89999999999999988763 222222 111000 01000 00000 011224455554 2322
Q ss_pred eecCCCCCCcceeeccceeeceEEEEECCC
Q 040428 256 FVDGGVNPQTSIVIGGCQLENNLLQFDLAT 285 (311)
Q Consensus 256 ~~~~G~~~~~~~ILG~~~~r~~~vvfDl~~ 285 (311)
.+|. ..-..+||--.+|.+.-.-||++
T Consensus 77 Vld~---~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 77 VVDD---NEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EEcC---CCcceEeeHHHHhhcceeeeccC
Confidence 3442 12356999999999999988874
No 42
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=27.99 E-value=3.7e+02 Score=25.70 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=51.6
Q ss_pred EEEecCCcccccCHHHHHH--HHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE----e
Q 040428 183 AKINTVNPYTVLETSIYKA--FVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR----F 256 (311)
Q Consensus 183 ~iiDSGTt~t~lp~~~y~~--l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~----~ 256 (311)
+.||||+-+|.+...-.+. |.+.++....+..+--+.....-| +=...+++++ ..+. .
T Consensus 249 AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~--------------Ih~~~lki~~--~~l~c~ftV 312 (380)
T KOG0012|consen 249 AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGR--------------IHQAQLKIED--LYLPCSFTV 312 (380)
T ss_pred EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccce--------------eEEEEEEecc--EeeccceEE
Confidence 8999999999888776665 233333222111000000000001 1123444444 2332 3
Q ss_pred ecCCCCCCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 257 VDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 257 ~~~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
++. ......||--.+|.+.-.-|++++++-|..
T Consensus 313 ~d~---~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~ 345 (380)
T KOG0012|consen 313 LDR---RDMDLLLGLDMLRRHQCCIDLKTNVLRIGN 345 (380)
T ss_pred ecC---CCcchhhhHHHHHhccceeecccCeEEecC
Confidence 332 123468999999999999999999999884
No 43
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.54 E-value=67 Score=21.58 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.3
Q ss_pred cEEEecCCcccccCHHHHHHH
Q 040428 182 GAKINTVNPYTVLETSIYKAF 202 (311)
Q Consensus 182 ~~iiDSGTt~t~lp~~~y~~l 202 (311)
.+++|+|.+...+..+.++.+
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 489999999999999988754
No 44
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=21.30 E-value=59 Score=26.93 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=19.7
Q ss_pred CcEEEecCCcccccCHHHHHHHH
Q 040428 181 DGAKINTVNPYTVLETSIYKAFV 203 (311)
Q Consensus 181 ~~~iiDSGTt~t~lp~~~y~~l~ 203 (311)
..+++|||+..+|.-+++.+.|.
T Consensus 13 ~~~LlDsGSq~SfIt~~la~~L~ 35 (164)
T PF05585_consen 13 ARALLDSGSQRSFITESLANKLN 35 (164)
T ss_pred EEEEEecCCchhHHhHHHHHHhC
Confidence 35899999999999999888754
No 45
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=21.25 E-value=20 Score=20.52 Aligned_cols=14 Identities=7% Similarity=0.214 Sum_probs=9.9
Q ss_pred ecCCcccccCHHHH
Q 040428 186 NTVNPYTVLETSIY 199 (311)
Q Consensus 186 DSGTt~t~lp~~~y 199 (311)
|||||+..+--.+.
T Consensus 3 DsGST~~Ll~~~l~ 16 (26)
T TIGR03778 3 DSGSTLALLGLGLL 16 (26)
T ss_pred CchhHHHHHHHHHH
Confidence 88999877655443
Done!