Query 040428
Match_columns 311
No_of_seqs 169 out of 1115
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040428.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040428hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vla_A EDGP; extracellular, in 100.0 2.2E-50 7.5E-55 387.8 23.3 282 26-308 91-413 (413)
2 3aup_A SBG7S, BG, basic 7S glo 100.0 1.4E-44 5E-49 346.3 23.6 274 26-309 92-402 (403)
3 1t6e_X Xylanase inhibitor; two 100.0 3.5E-42 1.2E-46 327.5 25.6 264 26-304 78-381 (381)
4 2qzx_A Candidapepsin-5; aspart 100.0 5.9E-37 2E-41 287.3 17.3 243 7-303 62-334 (342)
5 1j71_A Candidapepsin, aspartic 100.0 1.8E-36 6.1E-41 283.2 19.7 240 7-303 62-327 (334)
6 1tzs_A Cathepsin E; hydrolase, 100.0 2.1E-36 7.1E-41 284.6 20.0 248 7-303 64-345 (351)
7 3cms_A Chymosin B; hydrolase, 100.0 1E-36 3.5E-41 283.6 17.0 244 8-293 56-322 (323)
8 2apr_A Rhizopuspepsin; hydrola 100.0 2.1E-36 7.3E-41 281.7 18.6 244 6-293 54-323 (325)
9 4aa9_A Chymosin; hydrolase, as 100.0 3.1E-36 1.1E-40 279.7 17.5 244 8-293 53-319 (320)
10 3fv3_A SAPP1P-secreted asparti 100.0 2.1E-36 7.1E-41 283.0 16.4 244 7-303 56-332 (339)
11 1dpj_A Proteinase A; proteinas 100.0 6.7E-36 2.3E-40 278.7 19.2 243 8-293 55-328 (329)
12 2x0b_A Renin; hydrolase-hormon 100.0 4.3E-36 1.5E-40 285.7 17.2 241 8-293 105-382 (383)
13 1htr_B Gastricsin; aspartyl pr 100.0 1.6E-35 5.3E-40 276.2 19.6 244 8-293 54-328 (329)
14 1mpp_A Pepsin; hydrolase(acid 100.0 8E-36 2.7E-40 281.5 17.5 251 7-304 60-359 (361)
15 3pvk_A Candidapepsin-2; hydrol 100.0 2.5E-35 8.6E-40 275.8 20.7 243 7-303 62-334 (342)
16 1am5_A Pepsin, acid proteinase 100.0 8.3E-36 2.8E-40 277.5 16.8 241 8-293 54-323 (324)
17 3psg_A Pepsinogen; hydrolase(a 100.0 1.1E-35 3.8E-40 281.8 17.5 245 7-293 97-369 (370)
18 3k1w_A Renin; protease, altern 100.0 2.9E-35 9.9E-40 275.3 18.3 243 7-293 61-339 (341)
19 1oew_A Endothiapepsin; hydrola 100.0 1.3E-35 4.4E-40 276.9 15.5 243 7-292 55-328 (329)
20 3c9x_A Trichoderma reesei aspa 100.0 1E-35 3.4E-40 277.6 14.7 243 7-292 56-328 (329)
21 2qp8_A Beta-secretase 1; BACE1 100.0 1.8E-34 6.1E-39 275.5 23.3 264 7-306 58-373 (395)
22 1ibq_A Aspergillopepsin; aspar 100.0 3.4E-35 1.2E-39 273.6 16.5 242 7-292 53-323 (325)
23 1yg9_A Aspartic protease BLA G 100.0 3E-35 1E-39 274.6 16.0 242 7-293 58-328 (330)
24 2ewy_A Beta-secretase 2; BACE2 100.0 1.6E-34 5.6E-39 274.5 20.6 264 7-305 50-360 (383)
25 1izd_A Aspartic proteinase; su 100.0 1E-34 3.6E-39 270.2 17.0 241 7-292 54-321 (323)
26 3lpj_A Beta-secretase 1; alzhe 100.0 7.6E-34 2.6E-38 276.0 22.1 268 6-306 110-426 (455)
27 1qdm_A Prophytepsin; aspartic 100.0 4.3E-34 1.5E-38 279.1 19.3 173 8-208 95-281 (478)
28 3vf3_A Beta-secretase 1; struc 100.0 1.8E-33 6E-38 269.1 22.9 267 7-306 65-380 (402)
29 1miq_A Plasmepsin; aspartic pr 100.0 4.1E-34 1.4E-38 271.5 17.7 236 8-293 104-373 (375)
30 1bxo_A Protein (penicillopepsi 100.0 1.1E-34 3.7E-39 270.0 13.2 239 8-292 55-321 (323)
31 1wkr_A Polyporopepsin; hydrola 100.0 2E-33 6.9E-38 263.0 18.1 241 8-303 44-336 (340)
32 2bju_A Plasmepsin II; aspartic 100.0 2.4E-33 8.4E-38 271.7 13.7 239 7-293 179-449 (453)
33 1lya_B Cathepsin D; lysosomal 100.0 2.1E-32 7.2E-37 244.1 16.4 203 64-293 3-240 (241)
34 3qvc_A Histo-aspartic protease 100.0 1.5E-32 5E-37 266.3 16.1 238 7-293 178-448 (451)
35 1b5f_A Protein (cardosin A); h 99.9 1.2E-25 4.2E-30 200.4 12.3 173 8-208 56-238 (239)
36 1b5f_B Protein (cardosin A); h 99.0 4.8E-10 1.7E-14 83.7 5.4 55 239-293 12-86 (87)
37 1lya_A Cathepsin D; lysosomal 94.6 0.03 1E-06 41.9 3.9 41 7-54 56-96 (97)
38 2i1a_A DNA damage-inducible pr 90.7 0.6 2E-05 37.1 6.7 107 149-291 24-134 (148)
39 3s8i_A Protein DDI1 homolog 1; 77.5 2.3 7.8E-05 34.0 4.2 109 148-291 21-133 (148)
40 3slz_A GAG-Pro-POL polyprotein 23.8 64 0.0022 25.1 3.4 26 157-197 25-50 (132)
41 1ibq_A Aspergillopepsin; aspar 22.3 74 0.0025 28.0 4.1 33 148-198 12-44 (325)
No 1
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=2.2e-50 Score=387.84 Aligned_cols=282 Identities=54% Similarity=0.805 Sum_probs=219.6
Q ss_pred CCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcceEEeeCCCCCChHHHHhh
Q 040428 26 VAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVVGIAGLGRSKVALPSQLVA 105 (311)
Q Consensus 26 ~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~GIlGLg~~~~Sl~~ql~~ 105 (311)
..|.|...|..++++++|+|++|+|+|++.+|...+..+.++++.|||++.+.+.+++...+||||||++++|+++||+.
T Consensus 91 ~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~~~~~dGIlGLg~~~lSl~sql~~ 170 (413)
T 3vla_A 91 NTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQFAS 170 (413)
T ss_dssp SEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTSCTTCCEEEECSSSSSSHHHHHHH
T ss_pred CcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCcccccccccccCCCCcchHHHHhh
Confidence 45787777655789999999999999987554332234688999999999874445566789999999999999999994
Q ss_pred cc-CCCcEEeccCCC--CcceEEEcCCCCC--CCCcce------eeeeecCCCC----------CcceEEEEEEEEEcce
Q 040428 106 FS-LKRKFALYLSPF--GNGVIIFSDGPYD--LNFDVS------NTASGFLGEP----------SVEYFIGVASVNVNGK 164 (311)
Q Consensus 106 ~g-l~~~FS~cL~~~--~~G~l~fG~~d~~--~~~~~s------~~lt~~~~~~----------~~~Y~V~l~gIsvg~~ 164 (311)
++ ++++|||||++. .+|+|+||+.|.. ++.+++ +|| +.++.. ..+|+|+|++|+||++
T Consensus 171 ~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl-~~~~~~~~~~~~~~~~~~~y~V~l~~IsVgg~ 249 (413)
T 3vla_A 171 AFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPL-LTNPVSTSATSTQGEPSVEYFIGVKSIKINSK 249 (413)
T ss_dssp HHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEEC-BCCSSCCSSSCCTTCCCCSCEECCCEEEETTE
T ss_pred hcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeec-ccCCccccccccccCCCceEEEEEEEEEECCE
Confidence 43 479999999984 6899999998752 221222 344 333221 2799999999999999
Q ss_pred EeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCC--CccccCCCCCCcceeeecCCCccccCCCCCe
Q 040428 165 AVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMP--KVTRVSPVAPSRACFRLQDIGFTRIRPFVPQ 242 (311)
Q Consensus 165 ~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~--~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 242 (311)
.+.+++..|.+++++.+++|||||||+|+||+++|++|+++|.+++. ++++++....++.||+.+....++....+|+
T Consensus 250 ~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~lP~ 329 (413)
T 3vla_A 250 IVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVASVAPFGACFSTDNILSTRLGPSVPS 329 (413)
T ss_dssp EECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECCCTTCSCEEECTTCCEETTEECCCC
T ss_pred EccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCCCCCCcceeccCCccccccccCCCc
Confidence 99998888887766778999999999999999999999999998864 4555444445789999764321112247999
Q ss_pred EEEEEcCCceEEE------ee--cCC-----CC-----CCcceeeccceeeceEEEEECCCCEEEEEecCCCCCCCCCCC
Q 040428 243 IDLVLQNKNVVWR------FV--DGG-----VN-----PQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTCSNF 304 (311)
Q Consensus 243 i~~~f~g~~~~l~------~~--~~G-----~~-----~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~C~~~ 304 (311)
|+|+|+|+++.|. ++ +.+ +. ..+.||||++|||++|+|||++++|||||++++.++++|+++
T Consensus 330 i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~vvfD~~~~riGfa~~~~~~~~~c~~~ 409 (413)
T 3vla_A 330 IDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLVQFDLATSRVGFSGTLLGSRTTCANF 409 (413)
T ss_dssp EEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEEEEETTTTEEEEEEEGGGGTCCGGGS
T ss_pred EEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEEEEECCCCEEEEEEecccCcccccCc
Confidence 9999998434444 22 222 11 135899999999999999999999999999999999999999
Q ss_pred cCcc
Q 040428 305 NFTS 308 (311)
Q Consensus 305 ~~~~ 308 (311)
+|++
T Consensus 410 ~~~~ 413 (413)
T 3vla_A 410 NFTS 413 (413)
T ss_dssp BCCC
T ss_pred CCCC
Confidence 9974
No 2
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=1.4e-44 Score=346.32 Aligned_cols=274 Identities=36% Similarity=0.576 Sum_probs=201.4
Q ss_pred CCcccceeeecCCceEEEEEEEEEEEeecCCCCC--CCcceeeCcEEEEeeeccccc-CCCCCcceEEeeCCCCCChHHH
Q 040428 26 VAYVALARRTISNTGTFGDIHIDVLSIQSTNGHN--PGRAVTVPNFILLCGSEFVLQ-GLANGVVGIAGLGRSKVALPSQ 102 (311)
Q Consensus 26 ~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~--~~~~~~v~~~~FGc~~~~~~~-~~~~~~~GIlGLg~~~~Sl~~q 102 (311)
..|.+...|..|++.++|.|++|+|+|++.+|.+ ....+.++++.|||++.+... +.+...+||||||++++|++.|
T Consensus 92 ~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~q 171 (403)
T 3aup_A 92 NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQ 171 (403)
T ss_dssp SEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSSSTTSHHHH
T ss_pred CcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCCCCcCHHHH
Confidence 4677777764478999999999999998754322 122368899999999987433 4456789999999999999999
Q ss_pred HhhccC-CCcEEeccCCC--CcceEEEcCCCCC-----CCC----cc-eeeeeecCCCCCcceEEEEEEEEEcceEe-ec
Q 040428 103 LVAFSL-KRKFALYLSPF--GNGVIIFSDGPYD-----LNF----DV-SNTASGFLGEPSVEYFIGVASVNVNGKAV-PL 168 (311)
Q Consensus 103 l~~~gl-~~~FS~cL~~~--~~G~l~fG~~d~~-----~~~----~~-s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l-~~ 168 (311)
|++..+ +++|||||++. ..|.|+||+ |.. +|. .+ ..|| +.++ ..+|+|.|++|+|+++.+ .+
T Consensus 172 l~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl-~~~~--~~~y~v~l~~i~v~g~~~~~~ 247 (403)
T 3aup_A 172 LASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPL-TITL--QGEYNVRVNSIRINQHSVFPL 247 (403)
T ss_dssp HHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEEC-EECT--TSCEEECEEEEEETTEEEECC
T ss_pred HHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeeccc-ccCC--CCcceEEEEEEEECCEEcccC
Confidence 983223 78999999874 689999999 642 121 11 1233 3322 369999999999999998 77
Q ss_pred CcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEc
Q 040428 169 NKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQ 248 (311)
Q Consensus 169 ~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~ 248 (311)
+...+.++.++.+++|||||||+++||+++|++|+++|.+++..+++++....+..||+.+.. ..+|.|+|+|+
T Consensus 248 ~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~~c~~~------~~~P~i~f~f~ 321 (403)
T 3aup_A 248 NKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKI------NAYPSVDLVMD 321 (403)
T ss_dssp ------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEECGGGC------CCCCCEEEEES
T ss_pred ChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceEECCCc------CcCCcEEEEEc
Confidence 777776666667889999999999999999999999999887544444333345689976432 36899999999
Q ss_pred CC---ceEEE----eec--C-----CCC-----CCcceeeccceeeceEEEEECCCCEEEE-EecCCCCCCCCCCCcCcc
Q 040428 249 NK---NVVWR----FVD--G-----GVN-----PQTSIVIGGCQLENNLLQFDLATSRLDF-SNSLLFEQTTCSNFNFTS 308 (311)
Q Consensus 249 g~---~~~l~----~~~--~-----G~~-----~~~~~ILG~~~~r~~~vvfDl~~~riGF-a~~~~~~~~~C~~~~~~~ 308 (311)
++ .+.+. ++. . ++. +.+.||||+.|||++|+|||++++|||| |+++..++++|++++.++
T Consensus 322 g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~~~~~~~C~~~~~~~ 401 (403)
T 3aup_A 322 KPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGFSTSSLHSHGVKCADLFNFA 401 (403)
T ss_dssp STTCCEEEECHHHHEEEC---CEEECEEECCSCCSSSEEECHHHHTTSCEEEETTTTEEEEESSCGGGGTCCGGGSCCTT
T ss_pred CCCceEEEEcccceEEEcCCCeEEEEEEcCCCCCCCcEEEChHHhcCeEEEEECCCCEEEEecccccccCCCcccccccc
Confidence 85 33333 221 1 111 1357999999999999999999999999 999999999999999988
Q ss_pred c
Q 040428 309 N 309 (311)
Q Consensus 309 ~ 309 (311)
|
T Consensus 402 ~ 402 (403)
T 3aup_A 402 N 402 (403)
T ss_dssp T
T ss_pred c
Confidence 7
No 3
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=3.5e-42 Score=327.52 Aligned_cols=264 Identities=27% Similarity=0.438 Sum_probs=190.9
Q ss_pred CCcc-cceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcE----EEEeeecccccCCCCCcceEEeeCCCCCChH
Q 040428 26 VAYV-ALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNF----ILLCGSEFVLQGLANGVVGIAGLGRSKVALP 100 (311)
Q Consensus 26 ~~C~-~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~----~FGc~~~~~~~~~~~~~~GIlGLg~~~~Sl~ 100 (311)
..|. +...|. +|+.++|.|++|+|+|++.+|. ..++++ .|||++.+...+++...+||||||++++|++
T Consensus 78 ~~c~~f~i~Yg-dGs~~~G~l~~Dtv~ig~~~g~-----~~v~~~~~~~~Fg~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 151 (381)
T 1t6e_X 78 KPCTAYPYNPV-SGACAAGSLSHTRFVANTTDGS-----KPVSKVNVGVLAACAPSKLLASLPRGSTGVAGLANSGLALP 151 (381)
T ss_dssp CBCEECCBCTT-TCCBCCEEEEEEEEEEEEESSS-----SEEEEEEEEEEEEECCGGGGTTSCTTEEEEEECSSSTTSHH
T ss_pred Ccccccccccc-CCceeeEEEEEEEEEeeccCCC-----ccccceeeeeEeecCcccccCCCCCCCceEEEeCCCcchhH
Confidence 4674 666653 7888899999999999864321 234443 6799998743445567899999999999999
Q ss_pred HHHhhccC-CCcEEeccCCCCcceEEEcCCCCC----CCCcceeeeeecCCCCCcceEEEEEEEEEcceEeecCcccccc
Q 040428 101 SQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYD----LNFDVSNTASGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSI 175 (311)
Q Consensus 101 ~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~----~~~~~s~~lt~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~ 175 (311)
+||..+++ +++|||||++..+|+|+||+.+.. .+.-..+|| +.++. ..+|+|.|++|+|+++.+.++...|.
T Consensus 152 ~ql~~~~~~~~~FS~~L~~~~~G~l~fGg~~~~~~~~~g~l~~tPl-~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~~- 228 (381)
T 1t6e_X 152 AQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQFTQSMPYTPL-VTKGG-SPAHYISARSIVVGDTRVPVPEGALA- 228 (381)
T ss_dssp HHHHHHHTCCSEEEEECCSSSCEEEEESCCSCSCHHHHTTCCEEEC-BCCTT-CCSCEECEEEEEETTEECCCCTTCSC-
T ss_pred HHHhhhcccCceEEEEeCCCCCeeEEeCCcccccccccCcceeecc-ccCCC-CcceEEEEEEEEEcCEEecCCHHHcc-
Confidence 99985544 799999998855899999997642 111111243 33322 34678999999999999887665552
Q ss_pred cCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCC-------Ccccc-CCCCCCcceeeecCCCccccCCCCCeEEEEE
Q 040428 176 DNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMP-------KVTRV-SPVAPSRACFRLQDIGFTRIRPFVPQIDLVL 247 (311)
Q Consensus 176 ~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~-------~~~~~-~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f 247 (311)
.+++|||||||+++||+++|++|+++|.+++. +++++ .....++.||+.+.....+....+|+|+|+|
T Consensus 229 ----~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f 304 (381)
T 1t6e_X 229 ----TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGL 304 (381)
T ss_dssp ----TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEECCCCEEEEE
T ss_pred ----CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCcCCeEEEEE
Confidence 36899999999999999999999999988662 23333 2234567999875422111113689999999
Q ss_pred cCC-ceEEE----ee--cCC-----CC--C--------CcceeeccceeeceEEEEECCCCEEEEEecCCCCCCCCCCC
Q 040428 248 QNK-NVVWR----FV--DGG-----VN--P--------QTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTTCSNF 304 (311)
Q Consensus 248 ~g~-~~~l~----~~--~~G-----~~--~--------~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~C~~~ 304 (311)
+|+ ++.+. ++ +.+ +. . .+.||||++|||++|+|||++++|||||+++. .++|+.+
T Consensus 305 ~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~~--~~~cs~~ 381 (381)
T 1t6e_X 305 DGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPH--FTGCGGL 381 (381)
T ss_dssp TTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCT--TCCSCC-
T ss_pred CCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEecccC--CCCCCCC
Confidence 875 33333 11 111 11 1 25799999999999999999999999999987 8999975
No 4
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=5.9e-37 Score=287.25 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=182.9
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCc
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGV 86 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~ 86 (311)
...|.|..|++++.. .|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+ ...
T Consensus 62 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~Gs~~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~------~~~ 120 (342)
T 2qzx_A 62 AGSYSPASSRTSQNL-----NTRFDIKYG-DGSYAKGKLYKDTVGIGG---------VSVRDQLFANVWST------SAR 120 (342)
T ss_dssp TCCBCGGGCTTCEEE-----EEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEE------CSS
T ss_pred CCcCCcccCCCcccC-----CCcEEEEeC-CCCeEEEEEEEEEEEECC---------EEecceEEEEEEec------CCC
Confidence 356888888888753 588887764 788899999999999986 37889999999986 257
Q ss_pred ceEEeeCCCCC--------ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEE
Q 040428 87 VGIAGLGRSKV--------ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFI 154 (311)
Q Consensus 87 ~GIlGLg~~~~--------Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V 154 (311)
+||||||+..+ +++.||.++++ +++||+||++. ..|.|+||++|.. ++.++|+........+|.|
T Consensus 121 ~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~v 197 (342)
T 2qzx_A 121 KGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKA---KYSGSLVDLPITSEKKLTV 197 (342)
T ss_dssp SCEEECSCGGGCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETT---SBSSCCEEEECCCSSSCEE
T ss_pred cCEEEEccccccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchh---hEecceEEEeccCCceEEE
Confidence 99999999754 78889986664 68999999864 6899999999864 4555552111124459999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++.+..+ .++||||||++++||+++|++|.+++.+... +.+.........|+
T Consensus 198 ~l~~i~v~g~~~~~~-----------~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-~~~~~~~~~~~~C~-------- 257 (342)
T 2qzx_A 198 GLRSVNVRGRNVDAN-----------TNVLLDSGTTISYFTRSIVRNILYAIGAQMK-FDSAGNKVYVADCK-------- 257 (342)
T ss_dssp EEEEEEETTEEEEEE-----------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE-ECTTSCEEEEECTT--------
T ss_pred EEeEEEECCEecCCC-----------cCEEEeCCCCCEEcCHHHHHHHHHHhCCeee-eccCCCcEEEEECC--------
Confidence 999999999987532 3699999999999999999999999976542 11111101122453
Q ss_pred ccCCCCCeEEEEEcCC-ceEEE----eec-----C---CC-----CCCcceeeccceeeceEEEEECCCCEEEEEecCCC
Q 040428 235 RIRPFVPQIDLVLQNK-NVVWR----FVD-----G---GV-----NPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLF 296 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~-~~~l~----~~~-----~---G~-----~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~ 296 (311)
.+|.|+|+|.++ .+.+. ++. + +. .+.+.||||+.|||++|+|||++++|||||
T Consensus 258 ----~~p~i~f~f~~g~~~~i~~~~~~~~~~~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y~vfD~~~~~igfA----- 328 (342)
T 2qzx_A 258 ----TSGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDNILGDNFLRSAYVVYNLDDKKISMA----- 328 (342)
T ss_dssp ----CCCEEEEEETTTEEEEEEGGGGEECCBCTTSCBCSSEEESEEECSSCEECHHHHTTEEEEEETTTTEEEEE-----
T ss_pred ----CCCcEEEEECCCcEEEEcHHHhcccccccCCCCCCccEEEEecCCCcEeChHhhhcEEEEEECCCCEEEEE-----
Confidence 269999999754 33343 222 1 11 134579999999999999999999999999
Q ss_pred CCCCCCC
Q 040428 297 EQTTCSN 303 (311)
Q Consensus 297 ~~~~C~~ 303 (311)
++.|..
T Consensus 329 -~~~~~~ 334 (342)
T 2qzx_A 329 -PVKYTS 334 (342)
T ss_dssp -EBCCCS
T ss_pred -eeCCCC
Confidence 788864
No 5
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=1.8e-36 Score=283.18 Aligned_cols=240 Identities=16% Similarity=0.209 Sum_probs=184.7
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCc
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGV 86 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~ 86 (311)
...|.|..|++++.. .|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+ ...
T Consensus 62 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~Gs~~~G~~~~D~v~~g~---------~~~~~~~fg~~~~~------~~~ 120 (334)
T 1j71_A 62 EGTFDPSSSSSAQNL-----NQDFSIEYG-DLTSSQGSFYKDTVGFGG---------ISIKNQQFADVTTT------SVD 120 (334)
T ss_dssp SCCBCGGGCTTCEEE-----EEEEEEEBT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEE------SSS
T ss_pred CCcCCcccCCCcccC-----CCceEEEEC-CCCEEEEEEEEEEEEECC---------EEEccEEEEEEEec------CCC
Confidence 356888888888753 588877764 788899999999999986 37889999999986 257
Q ss_pred ceEEeeCCCCC--------ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEE
Q 040428 87 VGIAGLGRSKV--------ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFI 154 (311)
Q Consensus 87 ~GIlGLg~~~~--------Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V 154 (311)
+||||||+..+ +++.||.++++ +++||+||++. ..|.|+||++|.. ++.++++........+|.|
T Consensus 121 ~GilGLg~~~~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~v 197 (334)
T 1j71_A 121 QGIMGIGFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNA---KYTGTLTALPVTSSVELRV 197 (334)
T ss_dssp SCEEECSCGGGSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETT---SEEEEEEEEECCCSSSCEE
T ss_pred ccEEEEcCCcccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechH---HccCceEEEEccCCCeEEE
Confidence 99999999764 78889986665 68999999864 6899999999875 6667773111134569999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCC-cceeeecCCCc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPS-RACFRLQDIGF 233 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~~ 233 (311)
.|++|+|+++.+..+ ..+||||||++++||+++|++|.+++.+... . ...... ..|+.
T Consensus 198 ~l~~i~v~g~~~~~~-----------~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~-~~~~~~~~~C~~------ 256 (334)
T 1j71_A 198 HLGSINFDGTSVSTN-----------ADVVLDSGTTITYFSQSTADKFARIVGATWD---S-RNEIYRLPSCDL------ 256 (334)
T ss_dssp EEEEEEETTEEEEEE-----------EEEEECTTCSSEEECHHHHHHHHHHHTCEEE---T-TTTEEECSSSCC------
T ss_pred EEeEEEECCEeccCC-----------ccEEEeCCCCcEecCHHHHHHHHHHcCCccc---C-CCceEEEEcCCC------
Confidence 999999999987532 3699999999999999999999999976542 1 111112 46742
Q ss_pred cccCCCCCeEEEEEcCC-ceEEE----eec--CC------CCCCcceeeccceeeceEEEEECCCCEEEEEecCCCCCCC
Q 040428 234 TRIRPFVPQIDLVLQNK-NVVWR----FVD--GG------VNPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLFEQTT 300 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~-~~~l~----~~~--~G------~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~~~~~ 300 (311)
+|.|+|+|.++ .+.+. ++. .+ +.+.+.||||+.|||++|+|||++++||||| ++.
T Consensus 257 ------~p~i~f~f~~g~~~~i~~~~y~~~~~~~~~C~~~i~~~~~~iLG~~fl~~~y~vfD~~~~~igfA------~~~ 324 (334)
T 1j71_A 257 ------SGDAVFNFDQGVKITVPLSELILKDSDSSICYFGISRNDANILGDNFLRRAYIVYDLDDKTISLA------QVK 324 (334)
T ss_dssp ------CSEEEEEESTTCEEEEEGGGGEEECSSSSCEEESEEECTTCEECHHHHTTEEEEEETTTTEEEEE------EEC
T ss_pred ------CCceEEEEcCCcEEEECHHHheeecCCCCeeEEEEeECCCcEEChHhhccEEEEEECCCCEEEEE------ecC
Confidence 59999999654 34444 222 12 1234579999999999999999999999999 788
Q ss_pred CCC
Q 040428 301 CSN 303 (311)
Q Consensus 301 C~~ 303 (311)
|..
T Consensus 325 ~~~ 327 (334)
T 1j71_A 325 YTS 327 (334)
T ss_dssp CCS
T ss_pred CCC
Confidence 864
No 6
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=2.1e-36 Score=284.63 Aligned_cols=248 Identities=15% Similarity=0.135 Sum_probs=180.9
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|++++. ..|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ...
T Consensus 64 ~~~y~~~~SsT~~~-----~~~~~~i~Yg-~G-s~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~~~~~~ 127 (351)
T 1tzs_A 64 HSRFQPSQSSTYSQ-----PGQSFSIQYG-TG-SLSGIIGADQVSVEG---------LTVVGQQFGESVTEPGQTFVDAE 127 (351)
T ss_dssp SCCBCGGGCTTCBC-----CSCEEEEESS-SC-EEEEEEEEEEEEETT---------EEEEEEEEEEECSCCCGGGGGCS
T ss_pred CCcCCcccCcceEE-----CCCEEEEEeC-CC-CeEEEEEEeEEEECC---------eEECCeEEEEEEeccccccccCC
Confidence 35688888888764 3587777664 55 489999999999986 3788999999998732222 246
Q ss_pred cceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--C--cceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--G--NGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~--~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
.+||||||++.+| +..+|.++++ .++||+||++. . .|.|+||++|.. ++.++|+........+|.
T Consensus 128 ~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~ 204 (351)
T 1tzs_A 128 FDGILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHS---HFSGSLNWVPVTKQAYWQ 204 (351)
T ss_dssp CSEEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGG---GBCSCCEEEECSEETTEE
T ss_pred CceEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHH---HcCCceEEEecCCCceEE
Confidence 8999999998765 5567776664 79999999876 2 899999999975 455555211002357999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++.+... ....+||||||++++||+++|++|.+++.+... .+ .....|+..
T Consensus 205 v~l~~i~v~~~~~~~~---------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~-----~g-~~~~~C~~~----- 264 (351)
T 1tzs_A 205 IALDNIQVGGTVMFCS---------EGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPV-----DG-EYAVECANL----- 264 (351)
T ss_dssp EEEEEEEETTEEEECT---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC-----SS-SEEECGGGG-----
T ss_pred EEeCEEEECCceEEcC---------CCceEEeccCCcceeCCHHHHHHHHHHhCCccc-----CC-eEEEeCCCC-----
Confidence 9999999999886421 135799999999999999999999999865432 11 123468753
Q ss_pred cccCCCCCeEEEEEcCCceEEE----eec-----CC-----CC-------CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR----FVD-----GG-----VN-------PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~----~~~-----~G-----~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
..+|+|+|+|+|..+.+. ++. .+ +. ..+.||||+.|||++|+|||++++|||||
T Consensus 265 ----~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA- 339 (351)
T 1tzs_A 265 ----NVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLA- 339 (351)
T ss_dssp ----GGSCCEEEEETTEEEEECTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEE-
T ss_pred ----ccCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEE-
Confidence 258999999975333333 111 11 11 13579999999999999999999999999
Q ss_pred cCCCCCCCCCC
Q 040428 293 SLLFEQTTCSN 303 (311)
Q Consensus 293 ~~~~~~~~C~~ 303 (311)
++.|.+
T Consensus 340 -----~~~~~s 345 (351)
T 1tzs_A 340 -----PAVPWS 345 (351)
T ss_dssp -----EBC---
T ss_pred -----ECCccc
Confidence 666654
No 7
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=1e-36 Score=283.56 Aligned_cols=244 Identities=13% Similarity=0.102 Sum_probs=180.5
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
+.|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 56 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~~~~~~~ 119 (323)
T 3cms_A 56 QRFDPRKSSTFQNL-----GKPLSIHYG-TG-SMQGILGYDTVTVSN---------IVDIQQTVGLSTQEPGDFFTYAEF 119 (323)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEEEEEEEEEECCSHHHHHSSC
T ss_pred CCCCCccCCCeEEC-----CcEEEEEeC-CC-CeEEEEEEEEEEECC---------eEEeccEEEEEEecccccccccCC
Confidence 56888888888763 577777653 55 489999999999986 3788999999998732111 2468
Q ss_pred ceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC-CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEEEEE
Q 040428 87 VGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF-GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGVA 157 (311)
Q Consensus 87 ~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~-~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V~l~ 157 (311)
+||||||++.+| +..+|.++++ .++||+||++. ..|.|+||++|.. ++.++++........+|.|.|+
T Consensus 120 ~GilGLg~~~~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~v~l~ 196 (323)
T 3cms_A 120 DGILGMAYPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPS---YYTGSLHWVPVTVQQYWQFTVD 196 (323)
T ss_dssp SEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGG---GEEEEEEEEECSSBTTBEEEEE
T ss_pred ceEEecCcchhhccCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChh---hccCceEEEECccCCeEEEEEe
Confidence 999999998654 5567776664 79999999886 4599999999975 5666773111134679999999
Q ss_pred EEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccC
Q 040428 158 SVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIR 237 (311)
Q Consensus 158 gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 237 (311)
+|+|+++.+..+. ...+||||||++++||+++|++|.+++.+... ........|++.
T Consensus 197 ~i~v~~~~~~~~~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~g~~~~~C~~~--------- 253 (323)
T 3cms_A 197 SVTISGVVVACEG---------GCQAILDTGTSKLVGPSSDILNIQQAIGATQN-----QYGEFDIDCDNL--------- 253 (323)
T ss_dssp EEEETTEEEESTT---------CEEEEECTTCCSEEECHHHHHHHHHHHTCEEE-----TTTEEEECTTCT---------
T ss_pred eEEECCEEeecCC---------CcEEEEecCCccEeCCHHHHHHHHHHhCCeec-----CCCcEEEECCCC---------
Confidence 9999999876432 34799999999999999999999999854321 111122367653
Q ss_pred CCCCeEEEEEcCCceEEE----eec-C-----CCC---CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 238 PFVPQIDLVLQNKNVVWR----FVD-G-----GVN---PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 238 ~~~P~i~~~f~g~~~~l~----~~~-~-----G~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.+. ++. . ++. ..+.||||+.|||++|+|||++++|||||++
T Consensus 254 ~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 322 (323)
T 3cms_A 254 SYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKA 322 (323)
T ss_dssp TTSCCEEEEETTEEEEECHHHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccCceEEEEECCEEEEECHHHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEEC
Confidence 358999999976333333 221 1 111 2467999999999999999999999999953
No 8
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=2.1e-36 Score=281.72 Aligned_cols=244 Identities=13% Similarity=0.129 Sum_probs=181.3
Q ss_pred CCCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCC
Q 040428 6 IKQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANG 85 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~ 85 (311)
-...|.|..|++++. ..|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+........
T Consensus 54 ~~~~y~~~~SsT~~~-----~~~~~~i~Yg-~Gs~~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~~~~f~~~~ 118 (325)
T 2apr_A 54 GQTKYDPNQSSTYQA-----DGRTWSISYG-DGSSASGILAKDNVNLGG---------LLIKGQTIELAKREAASFASGP 118 (325)
T ss_dssp TSCCBCGGGCTTCEE-----EEEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHTSS
T ss_pred CCCCCCcccCCCeee-----CCCEEEEEEC-CCCCEEEEEEEEEEEECC---------EEECcEEEEEEeccCcccccCC
Confidence 345688888888876 3588887764 788899999999999986 3788999999998732111234
Q ss_pred cceEEeeCCCCCC-------hHHHHhhccC--CCcEEeccCCC---CcceEEEcCCCCCCCCcceeeee-ecCCCCCcce
Q 040428 86 VVGIAGLGRSKVA-------LPSQLVAFSL--KRKFALYLSPF---GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEY 152 (311)
Q Consensus 86 ~~GIlGLg~~~~S-------l~~ql~~~gl--~~~FS~cL~~~---~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y 152 (311)
.+||||||+..++ ++.||.++|+ .++||+||++. ..|.|+||++|.. ++.++|+ ........+|
T Consensus 119 ~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~ 195 (325)
T 2apr_A 119 NDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDST---KFKGSLTTVPIDNSRGWW 195 (325)
T ss_dssp CSEEEECSCGGGCSSTTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGG---GBCSCCEEEECBCTTSSC
T ss_pred CceEEEeCCcccccccCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCch---hccCceEEEEccCCCCEE
Confidence 8999999997654 5678886774 78999999643 6899999999875 4555552 1110246799
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIG 232 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (311)
.|.|++|+|++ .+. .. ...+||||||++++||+++|++|++++.+++... + .....|+.
T Consensus 196 ~v~l~~i~vg~-~~~--~~--------~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~----g-~~~~~C~~----- 254 (325)
T 2apr_A 196 GITVDRATVGT-STV--AS--------SFDGILDTGTTLLILPNNIAASVARAYGASDNGD----G-TYTISCDT----- 254 (325)
T ss_dssp EEEECEEEETT-EEE--EC--------CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS----S-CEEECSCG-----
T ss_pred EEEEeEEEECC-Eec--CC--------CceEEEecCCccEECCHHHHHHHHHHHhcccCCC----C-eEEEECCC-----
Confidence 99999999999 332 11 2479999999999999999999999997765411 1 12235763
Q ss_pred ccccCCCCCeEEEEEcCCceEEE----eec--CC-----CC--CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 233 FTRIRPFVPQIDLVLQNKNVVWR----FVD--GG-----VN--PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 233 ~~~~~~~~P~i~~~f~g~~~~l~----~~~--~G-----~~--~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|+++.++ ++. .+ +. ..+.||||+.|||++|+|||++++|||||+.
T Consensus 255 -----~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 323 (325)
T 2apr_A 255 -----SAFKPLVFSINGASFQVSPDSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPV 323 (325)
T ss_dssp -----GGCCCEEEEETTEEEEECGGGGEEEEETTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred -----CCCCcEEEEECCEEEEECHHHEEEcCCCCeEEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEec
Confidence 247999999987544433 111 11 11 2467999999999999999999999999963
No 9
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=3.1e-36 Score=279.66 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=182.0
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 53 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~g-s~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~~~~~~~~~~ 116 (320)
T 4aa9_A 53 HRFDPRKSSTFRNL-----GKPLSIHYG-TG-SMEGFLGYDTVTVSN---------IVDPNQTVGLSTEQPGEVFTYSEF 116 (320)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEEEEEEEEEECCSHHHHSCCC
T ss_pred CCCCCCCCcCeEcC-----CcEEEEEEC-Cc-EEEEEEEEEEEEECC---------EeecCeEEEEEEEcccccccccCc
Confidence 56888888888764 477776653 44 589999999999986 3788999999998732112 2457
Q ss_pred ceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC-CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEEEEE
Q 040428 87 VGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF-GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIGVA 157 (311)
Q Consensus 87 ~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~-~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V~l~ 157 (311)
+||||||+..++ +..+|.++|+ .++||+||.+. ..|.|+||++|.. ++.++|+........+|.|.|+
T Consensus 117 ~GilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~w~v~l~ 193 (320)
T 4aa9_A 117 DGILGLAYPSLASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPS---YYTGSLHWVPVTLQQYWQFTVD 193 (320)
T ss_dssp SEEEECSCGGGSCTTCCCHHHHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGG---GEEEEEEEEECSSBTTBEEEEC
T ss_pred ccEEecCcccccccCCCCHHHHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHH---HccCceEEEEcccCCceEEEEe
Confidence 999999997544 6677876664 78999999975 6899999999975 6677773111135679999999
Q ss_pred EEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccccC
Q 040428 158 SVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTRIR 237 (311)
Q Consensus 158 gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 237 (311)
+|+|+++.+..+. ...+||||||++++||+++|++|.+++.+... ........|...
T Consensus 194 ~i~v~~~~~~~~~---------~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~-----~~g~~~~~C~~~--------- 250 (320)
T 4aa9_A 194 SVTINGVAVACVG---------GCQAILDTGTSVLFGPSSDILKIQMAIGATEN-----RYGEFDVNCGNL--------- 250 (320)
T ss_dssp EEEETTEEEESTT---------CEEEEECTTCSSEEEEHHHHHHHHHHTTCEEC-----TTSCEEECGGGG---------
T ss_pred EEEECCEEeccCC---------CcEEEEECCCCcEECCHHHHHHHHHHhCCccc-----CCCcEEEeCCCC---------
Confidence 9999999876431 34799999999999999999999998854321 111123467653
Q ss_pred CCCCeEEEEEcCCceEEE----eec-C-----CCC---CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 238 PFVPQIDLVLQNKNVVWR----FVD-G-----GVN---PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 238 ~~~P~i~~~f~g~~~~l~----~~~-~-----G~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.+. +++ . ++. ..+.||||+.|||++|+|||++++|||||++
T Consensus 251 ~~~p~i~f~f~g~~~~l~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a 319 (320)
T 4aa9_A 251 RSMPTVVFEINGRDYPLSPSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKA 319 (320)
T ss_dssp GGCCCEEEEETTEEEEECHHHHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred CcCceEEEEECCEEEEECHHHhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEec
Confidence 368999999976444443 222 1 111 2357999999999999999999999999953
No 10
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=2.1e-36 Score=282.98 Aligned_cols=244 Identities=18% Similarity=0.240 Sum_probs=186.9
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCc
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGV 86 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~ 86 (311)
...|.|..|++++.+ .|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++... ..
T Consensus 56 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~gs~~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~~------~~ 114 (339)
T 3fv3_A 56 SGTFTPSSSSSYKNL-----GAAFTIRYG-DGSTSQGTWGKDTVTING---------VSITGQQIADVTQTS------VD 114 (339)
T ss_dssp TCCBCGGGCTTCEEE-----EEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEES------SS
T ss_pred CCcCCCccCcceeeC-----CceEEEEEC-CCceEEEEEEEEEEEECC---------EEECceEEEEEEecC------CC
Confidence 467888888888765 477777764 778999999999999986 478999999999872 36
Q ss_pred ceEEeeCCCCCC----------------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecC
Q 040428 87 VGIAGLGRSKVA----------------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFL 145 (311)
Q Consensus 87 ~GIlGLg~~~~S----------------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~ 145 (311)
+||||||+..++ |+.||.++|+ +++||+||.+. ..|.|+||++|.. ++.++|+ ...
T Consensus 115 ~GilGLg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~ 191 (339)
T 3fv3_A 115 QGILGIGYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNA---KYSGKLVAEQV 191 (339)
T ss_dssp SCEEECSCGGGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETT---SBSSCCEEEEB
T ss_pred ceeEEecCccccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechH---HeecceEEEec
Confidence 999999997653 7889987765 68999999876 5899999999875 4555552 111
Q ss_pred CCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcce
Q 040428 146 GEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRAC 225 (311)
Q Consensus 146 ~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C 225 (311)
....+|.|.|++|+|+++.+... ..+||||||++++||+++|++|.+++.+....... ........|
T Consensus 192 -~~~~~~~v~l~~i~v~g~~~~~~-----------~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~-~~~~~~~~C 258 (339)
T 3fv3_A 192 -TSSQALTISLASVNLKGSSFSFG-----------DGALLDSGTTLTYFPSDFAAQLADKAGARLVQVAR-DQYLYFIDC 258 (339)
T ss_dssp -CCSSSCEEEEEEEEESSCEEEEE-----------EEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEET-TEEEEEECT
T ss_pred -ccCccEEEEEEEEEECCEeecCC-----------ccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccc-cCceEEEec
Confidence 23469999999999999987532 36999999999999999999999999755421000 111123467
Q ss_pred eeecCCCccccCCCCCeEEEEEcCC-ceEEE----eec--CC-----CCCCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 226 FRLQDIGFTRIRPFVPQIDLVLQNK-NVVWR----FVD--GG-----VNPQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 226 ~~~~~~~~~~~~~~~P~i~~~f~g~-~~~l~----~~~--~G-----~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
+. ..+|.|+|+|+++ .+.+. ++. .+ +.+.+.||||+.|||++|+|||++++|||||
T Consensus 259 ~~----------~~~p~i~f~f~~g~~~~v~~~~~~~~~~~~~C~~~i~~~~~~ilG~~fl~~~y~vfD~~~~~igfA-- 326 (339)
T 3fv3_A 259 NT----------DTSGTTVFNFGNGAKITVPNTEYVYQNGDGTCLWGIQPSDDTILGDNFLRHAYLLYNLDANTISIA-- 326 (339)
T ss_dssp TC----------CCCSEEEEEETTSCEEEEEGGGGEEECSSSCEEESEEECSSCEECHHHHTTEEEEEETTTTEEEEE--
T ss_pred CC----------CCCCcEEEEECCCCEEEECHHHheeeCCCCeEEEEEEeCCcEEeChHHHhCEEEEEECCCCEEEEE--
Confidence 64 2479999999754 44454 222 12 1235679999999999999999999999999
Q ss_pred CCCCCCCCCC
Q 040428 294 LLFEQTTCSN 303 (311)
Q Consensus 294 ~~~~~~~C~~ 303 (311)
+++|..
T Consensus 327 ----~~~~~~ 332 (339)
T 3fv3_A 327 ----QVKYTT 332 (339)
T ss_dssp ----EBCCCS
T ss_pred ----ecCCCC
Confidence 888983
No 11
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=6.7e-36 Score=278.67 Aligned_cols=243 Identities=14% Similarity=0.160 Sum_probs=179.2
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++. ..|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 55 ~~y~~~~SsT~~~-----~~~~~~i~Yg-~G-s~~G~~~~D~v~ig~---------~~~~~~~fg~~~~~~~~~f~~~~~ 118 (329)
T 1dpj_A 55 SKYDHEASSSYKA-----NGTEFAIQYG-TG-SLEGYISQDTLSIGD---------LTIPKQDFAEATSEPGLTFAFGKF 118 (329)
T ss_dssp CCBCGGGCTTCEE-----EEEEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEEEEEEEEEECCHHHHTTCSC
T ss_pred CcCCcccCcCeEE-----CCcEEEEEEC-Cc-eEEEEEEEEEEEECC---------eEECCeEEEEEEecCccccccCCc
Confidence 5688888888765 4577777764 55 799999999999986 3788999999998732111 3468
Q ss_pred ceEEeeCCCCCChH------HHHhhccC--CCcEEeccCCC-----CcceEEEcCCCCCCCCcceeeeeecCCCCCcceE
Q 040428 87 VGIAGLGRSKVALP------SQLVAFSL--KRKFALYLSPF-----GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYF 153 (311)
Q Consensus 87 ~GIlGLg~~~~Sl~------~ql~~~gl--~~~FS~cL~~~-----~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~ 153 (311)
+||||||+..+|+. .+|.++|+ .++||+||++. ..|.|+||++|.. ++.++|+........+|.
T Consensus 119 ~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~~ 195 (329)
T 1dpj_A 119 DGILGLGYDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDES---KFKGDITWLPVRRKAYWE 195 (329)
T ss_dssp SEEEECSCGGGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGG---GEEEEEEEEECSSBTTBE
T ss_pred ceEEEeCCchhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChh---hcCCceEEEEcCCCceEE
Confidence 99999999877643 46666664 68999999764 3799999999975 666677311113467999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++.+... ...+||||||++++||+++|++|.+++.+... ........|...
T Consensus 196 v~l~~i~v~~~~~~~~----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~-----~~g~~~~~C~~~----- 255 (329)
T 1dpj_A 196 VKFEGIGLGDEYAELE----------SHGAAIDTGTSLITLPSGLAEMINAEIGAKKG-----WTGQYTLDCNTR----- 255 (329)
T ss_dssp EEEEEEEETTEEEECS----------SCEEEECTTCSCEEECHHHHHHHHHHHTCEEC-----TTSSEEECGGGG-----
T ss_pred EEeeeEEECCeEecCC----------CccEEeeCCCCcEECCHHHHHHHHHHhCCccC-----CCCeEEEECCCC-----
Confidence 9999999999887532 35799999999999999999999999864311 111111245432
Q ss_pred cccCCCCCeEEEEEcCCceEEE----eec-C-----CC-------CCCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR----FVD-G-----GV-------NPQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~----~~~-~-----G~-------~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.+. ++. . ++ ...+.||||+.|||++|+|||++++|||||++
T Consensus 256 ----~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~ 328 (329)
T 1dpj_A 256 ----DNLPDLIFNFNGYNFTIGPYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA 328 (329)
T ss_dssp ----GGCCCEEEEETTEEEEECTTTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ----CcCCcEEEEECCEEEEECHHHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEEC
Confidence 368999999986433333 111 1 11 12357999999999999999999999999953
No 12
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=4.3e-36 Score=285.69 Aligned_cols=241 Identities=16% Similarity=0.177 Sum_probs=179.3
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++. ..|.+...|. +| +++|.+++|+|+|++ ..++ +.|||++.+.+..+ ....
T Consensus 105 ~~y~~~~SsT~~~-----~~~~~~i~Yg-~G-s~~G~~~~Dtv~ig~---------~~v~-~~Fg~a~~~~g~~f~~~~~ 167 (383)
T 2x0b_A 105 KLFDASDSSSYKH-----NGTELTLRYS-TG-TVSGFLSQDIITVGG---------ITVT-QMFGEVTEMPALPFMLAEF 167 (383)
T ss_dssp CCBCGGGCTTCEE-----EEEEEEEECS-SC-EEEEEEEEEEEEETT---------EEEE-EEEEEEEECCHHHHTTCSS
T ss_pred CCCCCCCCCcEEE-----CCcEEEEEcC-Cc-cEEEEEEeeEEEEcC---------ceEE-EEEEEEEecCCcccccCCC
Confidence 5688888888875 3577776653 44 589999999999986 3778 99999998732212 3468
Q ss_pred ceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--C----cceEEEcCCCCCCCCcceeeee-ecCCCCCcc
Q 040428 87 VGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--G----NGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVE 151 (311)
Q Consensus 87 ~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~----~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~ 151 (311)
+||||||+..+| +..+|.++|+ .++||+||++. . +|+|+||++|.. +|.++|+ +.. ....|
T Consensus 168 dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~---~y~G~l~~~pv-~~~~~ 243 (383)
T 2x0b_A 168 DGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ---HYEGNFHYINL-IKTGV 243 (383)
T ss_dssp SEEEECSCGGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGG---GEEEEEEEEEB-SSTTS
T ss_pred ceEeccCCCccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChH---HcCCceEEEEc-CCCce
Confidence 999999998766 4456776665 79999999876 2 799999999975 6667773 111 34679
Q ss_pred eEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCC
Q 040428 152 YFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDI 231 (311)
Q Consensus 152 Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 231 (311)
|.|.|++|+|+++.+.. .+...+||||||+++++|+++|++|.+++.+.. ..+ .....|+..
T Consensus 244 w~v~l~~i~v~~~~~~~---------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~g-~~~v~C~~~--- 305 (383)
T 2x0b_A 244 WQIQMKGVSVGSSTLLC---------EDGCLALVDTGASYISGSTSSIEKLMEALGAKK-----RLF-DYVVKCNEG--- 305 (383)
T ss_dssp CEEEECEEEESSCCCBS---------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSS-CEEEEGGGT---
T ss_pred EEEEEeEEEeCCceEEc---------CCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-----cCC-cEEEecccc---
Confidence 99999999999986421 123579999999999999999999999986432 111 123468753
Q ss_pred CccccCCCCCeEEEEEcCCceEEE----eec---C-C------CC-------CCcceeeccceeeceEEEEECCCCEEEE
Q 040428 232 GFTRIRPFVPQIDLVLQNKNVVWR----FVD---G-G------VN-------PQTSIVIGGCQLENNLLQFDLATSRLDF 290 (311)
Q Consensus 232 ~~~~~~~~~P~i~~~f~g~~~~l~----~~~---~-G------~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGF 290 (311)
..+|+|+|+|+|.++.+. ++. . + +. ..+.||||++|||++|+|||++++||||
T Consensus 306 ------~~~P~i~f~~~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGf 379 (383)
T 2x0b_A 306 ------PTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 379 (383)
T ss_dssp ------TTCCCEEEEETTEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEE
T ss_pred ------ccCceEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeE
Confidence 358999999976434443 111 1 1 11 1357999999999999999999999999
Q ss_pred Eec
Q 040428 291 SNS 293 (311)
Q Consensus 291 a~~ 293 (311)
|++
T Consensus 380 A~a 382 (383)
T 2x0b_A 380 ALA 382 (383)
T ss_dssp EEE
T ss_pred EEc
Confidence 953
No 13
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=1.6e-35 Score=276.16 Aligned_cols=244 Identities=16% Similarity=0.188 Sum_probs=180.4
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 54 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~g-s~~G~~~~D~v~~g~---------~~~~~~~fg~~~~~~~~~~~~~~~ 117 (329)
T 1htr_B 54 SRFNPSESSTYSTN-----GQTFSLQYG-SG-SLTGFFGYDTLTVQS---------IQVPNQEFGLSENEPGTNFVYAQF 117 (329)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEEEEEEEESSCSSGGGGGCSC
T ss_pred CcCCCccCCCeEEC-----CcEEEEEeC-CC-CeEEEEEeeeEEEcc---------eEECceEEEEEEEccccccccCCC
Confidence 56888888887753 477776653 44 569999999999986 4788999999998732222 2468
Q ss_pred ceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--C-cceEEEcCCCCCCCCcceeeee-ecCCCCCcceEE
Q 040428 87 VGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--G-NGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFI 154 (311)
Q Consensus 87 ~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~-~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V 154 (311)
+||||||+..+| ++.+|.++++ .++||+||.+. . .|.|+||++|.. ++.++++ ... ....+|.|
T Consensus 118 ~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~~~v 193 (329)
T 1htr_B 118 DGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSS---LYTGQIYWAPV-TQELYWQI 193 (329)
T ss_dssp CEEEECCCCSCCCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGG---GEEEEEEEEEB-CSSSSCEE
T ss_pred ceEEecCCCcccccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHH---HcCCceEEEEC-CCCceEEE
Confidence 999999998765 5567776664 79999999886 2 799999999975 5666773 111 34679999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++.+... .....+||||||++++||+++|++|.+++.+... ..+ .....|+..
T Consensus 194 ~l~~i~v~~~~~~~~--------~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~----~~g-~~~~~C~~~------ 254 (329)
T 1htr_B 194 GIEEFLIGGQASGWC--------SEGCQAIVDTGTSLLTVPQQYMSALLQATGAQED----EYG-QFLVNCNSI------ 254 (329)
T ss_dssp EECEEEETTEECCTT--------TTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEEC----TTS-CEEECGGGG------
T ss_pred EEeEEEECCceeeec--------CCCceEEEecCCccEECCHHHHHHHHHHhCCeec----CCC-eEEEeCCCc------
Confidence 999999999875411 1235799999999999999999999999865432 111 123468753
Q ss_pred ccCCCCCeEEEEEcCCceEEE----eec-CC-----CC------C-Cc-ceeeccceeeceEEEEECCCCEEEEEec
Q 040428 235 RIRPFVPQIDLVLQNKNVVWR----FVD-GG-----VN------P-QT-SIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~~~~l~----~~~-~G-----~~------~-~~-~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.+. ++. .| +. + .+ .||||+.|||++|+|||++++|||||++
T Consensus 255 ---~~~P~i~f~f~g~~~~i~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~ 328 (329)
T 1htr_B 255 ---QNLPSLTFIINGVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATA 328 (329)
T ss_dssp ---GGSCCEEEEETTEEEEECHHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ---ccCCcEEEEECCEEEEECHHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeC
Confidence 358999999975333333 111 12 11 1 34 7999999999999999999999999953
No 14
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=8e-36 Score=281.50 Aligned_cols=251 Identities=15% Similarity=0.113 Sum_probs=183.5
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccc-----cC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVL-----QG 81 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~-----~~ 81 (311)
...|.|..|++++.. .|.+...|. +|+ ++|.+++|+|+|++ ..++++.|||++.+.+ ..
T Consensus 60 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~Gs-~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~~~~~~~~~~ 123 (361)
T 1mpp_A 60 KRFFDPSSSSTFKET-----DYNLNITYG-TGG-ANGIYFRDSITVGG---------ATVKQQTLAYVDNVSGPTAEQSP 123 (361)
T ss_dssp SCCBCGGGCTTCEEE-----EEEEEEECS-SCE-EEEEEEEEEEEETT---------EEEEEEEEEEEEEEESGGGSSCT
T ss_pred CCcCCCccCCceEec-----CCeEEEEEC-Cce-EEEEEEEEEEEECC---------EEEeceEEEEEEeccCccccccc
Confidence 356888888888763 477777663 555 89999999999986 4789999999998743 11
Q ss_pred C-CCCcceEEeeCCCCCCh------------HHHHhhccC--CCcEEeccCCC-CcceEEEcCCCCCCCCcceeeee---
Q 040428 82 L-ANGVVGIAGLGRSKVAL------------PSQLVAFSL--KRKFALYLSPF-GNGVIIFSDGPYDLNFDVSNTAS--- 142 (311)
Q Consensus 82 ~-~~~~~GIlGLg~~~~Sl------------~~ql~~~gl--~~~FS~cL~~~-~~G~l~fG~~d~~~~~~~s~~lt--- 142 (311)
+ ....+||||||++.+++ +.+|.++|+ .++||+||.+. ..|.|+||++|.. ++.++|+
T Consensus 124 ~~~~~~~GilGLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~---~~~g~l~~~p 200 (361)
T 1mpp_A 124 DSELFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNT---LLGGDIQYTD 200 (361)
T ss_dssp TCSSCCCEEEECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGG---GBSSCCEEEE
T ss_pred cccCCCCCEEEeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChh---hcCCceEEEE
Confidence 2 24689999999986654 447776664 69999999985 5899999999964 3444442
Q ss_pred -ecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEE-EecCCcccccCHHHHHHHHHHHHhhCCCccccCCCC
Q 040428 143 -GFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAK-INTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVA 220 (311)
Q Consensus 143 -~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~i-iDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~ 220 (311)
........+|.|.|++|+|+++.+.... ...+| |||||++++||+++|++|.+++.+... ...+ .
T Consensus 201 ~~~~~~~~~~~~v~l~~i~v~~~~~~~~~---------~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~g-~ 267 (361)
T 1mpp_A 201 VLKSRGGYFFWDAPVTGVKIDGSDAVSFD---------GAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT---ESQQ-G 267 (361)
T ss_dssp CEEETTEEEEEEEEEEEEEETTEEEEEEE---------EEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE---EETT-E
T ss_pred cccCCCceeEEEEEEeEEEECCeeeccCC---------CCEEEEECCCCCceeCCHHHHHHHHHHhCCccc---CCCC-c
Confidence 2111112389999999999998875321 24799 999999999999999999999976432 1111 1
Q ss_pred CCcceeeecCCCccccCCCC-CeEEEEE--c-----CCceEEE----eec--CC-------CC--CCcceeeccceeece
Q 040428 221 PSRACFRLQDIGFTRIRPFV-PQIDLVL--Q-----NKNVVWR----FVD--GG-------VN--PQTSIVIGGCQLENN 277 (311)
Q Consensus 221 ~~~~C~~~~~~~~~~~~~~~-P~i~~~f--~-----g~~~~l~----~~~--~G-------~~--~~~~~ILG~~~~r~~ 277 (311)
....|+.. ..+ |.|+|+| + +..+.+. ++. .+ +. ..+.||||+.|||++
T Consensus 268 ~~~~C~~~---------~~~~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~ 338 (361)
T 1mpp_A 268 YTVPCSKY---------QDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFF 338 (361)
T ss_dssp EEEEHHHH---------TTCCCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEESSSCCEEEHHHHTTE
T ss_pred EEEECCCc---------ccCCCcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeCCCCCEEEChHHhccE
Confidence 23478763 246 9999999 4 2233333 221 12 11 246799999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCCCCCCC
Q 040428 278 LLQFDLATSRLDFSNSLLFEQTTCSNF 304 (311)
Q Consensus 278 ~vvfDl~~~riGFa~~~~~~~~~C~~~ 304 (311)
|+|||++++||||| ++.|...
T Consensus 339 yvvfD~~~~~igfa------~~~~~~~ 359 (361)
T 1mpp_A 339 VNVYDFGKNRIGFA------PLASGYE 359 (361)
T ss_dssp EEEEETTTTEEEEE------EBCTTTC
T ss_pred EEEEECCCCEEEEE------EcccCCC
Confidence 99999999999999 7888754
No 15
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=2.5e-35 Score=275.81 Aligned_cols=243 Identities=17% Similarity=0.213 Sum_probs=183.4
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCc
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGV 86 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~ 86 (311)
...|.|..|++++.+ .|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++... ..
T Consensus 62 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~gs~~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~------~~ 120 (342)
T 3pvk_A 62 KGTYDPSGSSASQDL-----NTPFKIGYG-DGSSSQGTLYKDTVGFGG---------VSIKNQVLADVDSTS------ID 120 (342)
T ss_dssp TCCBCGGGCTTCEEE-----EEEEEEECS-SSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEES------SS
T ss_pred CCcCCCccCcceeec-----CCeEEEEec-CCCeEEEEEEEEEEEECC---------EEecceEEEEEEccC------CC
Confidence 346778888887654 477777664 777899999999999986 478899999999862 57
Q ss_pred ceEEeeCCCC-------CChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEE
Q 040428 87 VGIAGLGRSK-------VALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFI 154 (311)
Q Consensus 87 ~GIlGLg~~~-------~Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V 154 (311)
+||||||+.. .+++.||.++|+ +++||+||.+. ..|.|+||++|.. ++.++|+ ... ....+|.|
T Consensus 121 ~GilGLg~~~~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~~~v 196 (342)
T 3pvk_A 121 QGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNA---KYSGSLIALPV-TSDRELRI 196 (342)
T ss_dssp SCEEECSCGGGCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETT---SBSSCCEEEEC-CCSSSCEE
T ss_pred ccEEEecCccccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCcc---ceeeeeEEeec-CccceEEE
Confidence 9999999986 468899986665 68999999875 5799999999875 5555552 111 34459999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++.+..+ ...+||||||++++||+++|++|.+++.+... ............|+
T Consensus 197 ~l~~i~v~g~~~~~~----------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~-~~~~~~~~~~~~C~-------- 257 (342)
T 3pvk_A 197 SLGSVEVSGKTINTD----------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLT-QDSNGNSFYEVDCN-------- 257 (342)
T ss_dssp EEEEEEETTEEEEEE----------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEE-ECTTSCEEEEECSC--------
T ss_pred EEeEEEECCEEecCC----------CceEEEeCCCCCeecCHHHHHHHHHHcCCeec-ccCCCceEEEEecC--------
Confidence 999999999987643 13699999999999999999999999865542 00000001223454
Q ss_pred ccCCCCCeEEEEEcCC-ceEEE----eec----CC----C-----CCCcceeeccceeeceEEEEECCCCEEEEEecCCC
Q 040428 235 RIRPFVPQIDLVLQNK-NVVWR----FVD----GG----V-----NPQTSIVIGGCQLENNLLQFDLATSRLDFSNSLLF 296 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~-~~~l~----~~~----~G----~-----~~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~~~~ 296 (311)
..|.|+|+|+++ .+.+. ++. .| . .+.+.||||+.|||++|+|||++++|||||
T Consensus 258 ----~~p~i~f~f~~g~~~~vp~~~~~~~~~~~~g~~~~~C~~~i~~~~~~ilG~~fl~~~y~vfD~~~~~igfA----- 328 (342)
T 3pvk_A 258 ----LSGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDANILGDNFLRSAYIVYDLDDNEISLA----- 328 (342)
T ss_dssp ----CCSEEEEEESTTCEEEEEGGGGEEC----------CEEESEEECTTCEECHHHHTTEEEEEETTTTEEEEE-----
T ss_pred ----CCCceEEEECCCCEEEEcHHHheeeccccCCCcCCeeEEEEeeCCCeEeCHHHHhcEEEEEECCCCEEEEE-----
Confidence 249999999854 44444 221 22 1 134689999999999999999999999999
Q ss_pred CCCCCCC
Q 040428 297 EQTTCSN 303 (311)
Q Consensus 297 ~~~~C~~ 303 (311)
+++|..
T Consensus 329 -~~~~~~ 334 (342)
T 3pvk_A 329 -QVKYTS 334 (342)
T ss_dssp -EBCCCS
T ss_pred -ecCCCC
Confidence 788973
No 16
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=8.3e-36 Score=277.47 Aligned_cols=241 Identities=16% Similarity=0.174 Sum_probs=177.9
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++. .++++.|||++.+.+..+ ....
T Consensus 54 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~D~v~~g~~---------~~~~~~fg~~~~~~~~~~~~~~~ 117 (324)
T 1am5_A 54 NKFKPRQSSTYVET-----GKTVDLTYG-TG-GMRGILGQDTVSVGGG---------SDPNQELGESQTEPGPFQAAAPF 117 (324)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEESSSS---------CEEEEEEEEEEECCSTTTTTCSS
T ss_pred CcCCCccCCCeEeC-----CcEEEEEEC-CC-CeEEEEEECceeECCc---------EEcccEEEEEEecccccccCCCC
Confidence 56888888887753 477776653 55 5699999999999863 678999999998732222 2468
Q ss_pred ceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEEE
Q 040428 87 VGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFIG 155 (311)
Q Consensus 87 ~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V~ 155 (311)
+||||||++.+| ++.+|.++++ .++||+||++. ..|.|+||++|.. ++.++++ ... ....+|.|.
T Consensus 118 ~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~~~v~ 193 (324)
T 1am5_A 118 DGILGLAYPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNS---HYTGSIHWIPV-TAEKYWQVA 193 (324)
T ss_dssp SEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGG---GBCSCCEEEEE-EEETTEEEE
T ss_pred ceEEecCCccccccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHH---HcCCceEEEec-CCCcEEEEE
Confidence 999999998765 5567776664 78999999876 5899999999974 4444552 110 235699999
Q ss_pred EEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccc
Q 040428 156 VASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTR 235 (311)
Q Consensus 156 l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 235 (311)
|++|+|+++.+... + ..+||||||++++||+++|++|.+++.+. . ..+ .....|+..
T Consensus 194 l~~i~v~~~~~~~~---------~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g-~~~~~C~~~------- 250 (324)
T 1am5_A 194 LDGITVNGQTAACE---------G-CQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQG-EMMGNCASV------- 250 (324)
T ss_dssp ECEEEETTEECCCC---------C-EEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCC-CEECCTTSS-------
T ss_pred EeEEEECCceeecc---------C-ceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCC-cEEEeCCCc-------
Confidence 99999999875321 1 57999999999999999999999998654 1 111 123468753
Q ss_pred cCCCCCeEEEEEcCCceEEE----eec-C-----CCC-------CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 236 IRPFVPQIDLVLQNKNVVWR----FVD-G-----GVN-------PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 236 ~~~~~P~i~~~f~g~~~~l~----~~~-~-----G~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|..+.+. ++. . ++. ..+.||||+.|||++|+|||++++|||||++
T Consensus 251 --~~~P~i~f~f~g~~~~i~~~~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a 323 (324)
T 1am5_A 251 --QSLPDITFTINGVKQPLPPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPA 323 (324)
T ss_dssp --SSSCCEEEEETTEEEEECHHHHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEB
T ss_pred --ccCCcEEEEECCEEEEECHHHhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEEC
Confidence 368999999976333333 111 1 111 1357999999999999999999999999953
No 17
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=1.1e-35 Score=281.77 Aligned_cols=245 Identities=14% Similarity=0.134 Sum_probs=178.0
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|+++... .|.+...| +.++++|.+++|+|+|++ ..++++.|||++.+.+..+ ...
T Consensus 97 ~~~y~~~~SsT~~~~-----~~~~~i~Y--g~Gs~~G~~~~Dtv~ig~---------~~v~~~~Fg~a~~~~~~~~~~~~ 160 (370)
T 3psg_A 97 HNQFNPDDSSTFEAT-----SQELSITY--GTGSMTGILGYDTVQVGG---------ISDTNQIFGLSETEPGSFLYYAP 160 (370)
T ss_dssp SCCBCGGGCTTCEEE-----EEEEEEES--SSCEEEEEEEEEEEEETT---------EEEEEEEEEEECSCCCGGGGGCS
T ss_pred CCCCCCccCcCcEEC-----CcEEEEEe--CCceEEEEEEEEEEeeCC---------cccCCeEEEEEEeecccccccCC
Confidence 356788888887653 36666665 444589999999999986 4789999999998742212 246
Q ss_pred cceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeeeecCCCCCcceEEE
Q 040428 86 VVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTASGFLGEPSVEYFIG 155 (311)
Q Consensus 86 ~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~Y~V~ 155 (311)
.+||||||+..+| +..+|.++|+ .++||+||.+. .+|.|+||++|.. +|.++|+........+|.|.
T Consensus 161 ~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~---~y~g~l~~~pv~~~~~w~v~ 237 (370)
T 3psg_A 161 FDGILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSS---YYTGSLNWVPVSVEGYWQIT 237 (370)
T ss_dssp CSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGG---GBSSCCEEEECSEETTEEEE
T ss_pred ccceeccCCccccccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChH---hcCCcceeecccccceeEEE
Confidence 8999999998765 4556776665 68999999985 5899999999975 55556631111345799999
Q ss_pred EEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccc
Q 040428 156 VASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTR 235 (311)
Q Consensus 156 l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 235 (311)
|++|+|+++.+... +...+||||||++++||+++|++|.+++.+... ........|...
T Consensus 238 l~~i~v~g~~~~~~---------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~-----~~g~~~v~C~~~------- 296 (370)
T 3psg_A 238 LDSITMDGETIACS---------GGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN-----SDGEMVISCSSI------- 296 (370)
T ss_dssp ECEEESSSSEEECT---------TCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC-----TTCCEECCGGGG-------
T ss_pred EeEEEECCEEEecC---------CCceEEEcCCCCcEECCHHHHHHHHHHhCCccc-----CCCcEEEECCCc-------
Confidence 99999999876532 135799999999999999999999998854321 111123457543
Q ss_pred cCCCCCeEEEEEcCCceEEE----ee-cCCC-----C-------CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 236 IRPFVPQIDLVLQNKNVVWR----FV-DGGV-----N-------PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 236 ~~~~~P~i~~~f~g~~~~l~----~~-~~G~-----~-------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.++ ++ +.|. . .++.||||+.|||++|+|||++++|||||++
T Consensus 297 --~~lP~i~f~~~g~~~~l~~~~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a 369 (370)
T 3psg_A 297 --DSLPDIVFTIDGVQYPLSPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV 369 (370)
T ss_dssp --GGCCCEEEEETTEEEEECHHHHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred --ccCCcEEEEECCEEEEECHHHhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEc
Confidence 368999999976444443 22 2221 1 1236999999999999999999999999964
No 18
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=2.9e-35 Score=275.30 Aligned_cols=243 Identities=15% Similarity=0.168 Sum_probs=180.3
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeeccccc-CCCCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQ-GLANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~-~~~~~ 85 (311)
...|.|..|+++.. ..|.+...|. +| +++|.+++|+|+|++ ..+ ++.|||++.+... .....
T Consensus 61 ~~~y~~~~SsT~~~-----~~~~~~i~Yg-~g-s~~G~~~~D~v~ig~---------~~v-~~~fg~~~~~~~~~~~~~~ 123 (341)
T 3k1w_A 61 HKLFDASDSSSYKH-----NGTELTLRYS-TG-TVSGFLSQDIITVGG---------ITV-TQMFGEVTEMPALPFMLAE 123 (341)
T ss_dssp SCCBCGGGCTTCEE-----EEEEEEEEET-TE-EEEEEEEEEEEEETT---------EEE-EEEEEEEEECCHHHHTTCS
T ss_pred CCCCCCCcCcCeeE-----CCCEEEEEEC-Cc-EEEEEEEEEEEEECC---------cee-eEEEEEEEEccccccccCC
Confidence 35688888888764 3477776653 44 599999999999986 377 9999999987422 12346
Q ss_pred cceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCCC------cceEEEcCCCCCCCCcceeeeeecCCCCCcc
Q 040428 86 VVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPFG------NGVIIFSDGPYDLNFDVSNTASGFLGEPSVE 151 (311)
Q Consensus 86 ~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~~------~G~l~fG~~d~~~~~~~s~~lt~~~~~~~~~ 151 (311)
.+||||||+..++ ++.+|.++|+ .++||+||.+.. .|.|+||++|.. ++.++|+........+
T Consensus 124 ~~GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~ 200 (341)
T 3k1w_A 124 FDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQ---HYEGNFHYINLIKTGV 200 (341)
T ss_dssp SSEEEECSCGGGCGGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGG---GEEEEEEEEECSSTTS
T ss_pred cceEEECCchhhcccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChH---HccCceEEEecCCCCE
Confidence 7999999998765 5677876664 689999998762 899999999975 6677773111135689
Q ss_pred eEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCC
Q 040428 152 YFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDI 231 (311)
Q Consensus 152 Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 231 (311)
|.|.|++|+|+++.+.... ...+||||||++++||+++|++|.+++.+... ..+ ....|...
T Consensus 201 w~v~l~~i~v~~~~~~~~~---------~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g--~~~~C~~~--- 262 (341)
T 3k1w_A 201 WQIQMKGVSVGSSTLLCED---------GCLALVDTGASYISGSTSSIEKLMEALGAKKR----LFD--YVVKCNEG--- 262 (341)
T ss_dssp CEEEECCEEETTEEEECTT---------CEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----SSC--EEEEGGGG---
T ss_pred EEEEEeEEEECCEEeecCC---------CCEEEEECCCChhcCCHHHHHHHHHHcCCeec----CCC--eEEeCCCC---
Confidence 9999999999998754322 34799999999999999999999999865431 111 22346432
Q ss_pred CccccCCCCCeEEEEEcCCceEEE----eec---C-C------CC-------CCcceeeccceeeceEEEEECCCCEEEE
Q 040428 232 GFTRIRPFVPQIDLVLQNKNVVWR----FVD---G-G------VN-------PQTSIVIGGCQLENNLLQFDLATSRLDF 290 (311)
Q Consensus 232 ~~~~~~~~~P~i~~~f~g~~~~l~----~~~---~-G------~~-------~~~~~ILG~~~~r~~~vvfDl~~~riGF 290 (311)
..+|+|+|+|+|..+.+. ++. . + +. ..+.||||+.|||++|+|||++++||||
T Consensus 263 ------~~~p~i~f~f~g~~~~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igf 336 (341)
T 3k1w_A 263 ------PTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGF 336 (341)
T ss_dssp ------GGCCCEEEEETTEEEEECHHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEE
T ss_pred ------CcCCcEEEEECCEEEEECHHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEE
Confidence 368999999986444443 111 1 1 11 1357999999999999999999999999
Q ss_pred Eec
Q 040428 291 SNS 293 (311)
Q Consensus 291 a~~ 293 (311)
|++
T Consensus 337 A~a 339 (341)
T 3k1w_A 337 ALA 339 (341)
T ss_dssp EEE
T ss_pred EEC
Confidence 965
No 19
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=1.3e-35 Score=276.89 Aligned_cols=243 Identities=14% Similarity=0.112 Sum_probs=176.2
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|++++.+ ..|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+.+... ...
T Consensus 55 ~~~y~~~~SsT~~~~----~~~~~~i~Yg-~Gs~~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~~~~~~~~~~ 120 (329)
T 1oew_A 55 QTIYTPSKSTTAKLL----SGATWSISYG-DGSSSSGDVYTDTVSVGG---------LTVTGQAVESAKKVSSSFTEDST 120 (329)
T ss_dssp CCCBCGGGCTTCEEE----EEEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHHCTT
T ss_pred cCccCCccCccceec----CCCeEEEEeC-CCCcEEEEEEEEEEEECC---------EEEeeeEEEEEEecCccccccCC
Confidence 457888889888764 2377777764 777899999999999986 3788999999998732111 146
Q ss_pred cceEEeeCCCCCC---------hHHHHhhccC-CCcEEeccCCCCcceEEEcCCCCCCCCcceeeee--ecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVA---------LPSQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS--GFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~S---------l~~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt--~~~~~~~~~Y~ 153 (311)
.+||||||+..+| +..||.++ + .++||+||.+...|.|+||++|.. ++.++|+ ... ....+|.
T Consensus 121 ~~GilGLg~~~~s~~~~~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~---~~~g~l~~~p~~-~~~~~~~ 195 (329)
T 1oew_A 121 IDGLLGLAFSTLNTVSPTQQKTFFDNAKAS-LDSPVFTADLGYHAPGTYNFGFIDTT---AYTGSITYTAVS-TKQGFWE 195 (329)
T ss_dssp CCEEEECSCGGGCCCBSSCCCCHHHHHTTT-SSSSEEEEECCSSSCEEEEESCCCTT---SSSSCCEEEECB-CTTSSCE
T ss_pred CceEEEeccccccccCcCCCCCHHHHHHHh-ccCcEEEEEccCCCCeEEEEeccChH---hcccceEEEEcc-CCCceEE
Confidence 8999999997655 44566633 5 789999998766899999999975 4455552 111 2467999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++.+.. . ...+||||||++++||+++|++|.+++..+. +....+ .....|+.
T Consensus 196 v~l~~i~v~~~~~~~--~--------~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~--~~~~~g-~~~~~C~~------ 256 (329)
T 1oew_A 196 WTSTGYAVGSGTFKS--T--------SIDGIADTGTTLLYLPATVVSAYWAQVSGAK--SSSSVG-GYVFPCSA------ 256 (329)
T ss_dssp EEEEEEEETTSCCEE--E--------EEEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTT-EEEEETTC------
T ss_pred EEEeeEEECCeeccC--C--------CceEEEeCCCCCEECCHHHHHHHHHhCCCcE--EcCCCC-EEEEECCC------
Confidence 999999999986541 1 2479999999999999999999887763221 111011 11235752
Q ss_pred cccCCCCCeEEEEEcCCceEEE----ee---cCC-------CC---CCcceeeccceeeceEEEEEC-CCCEEEEEe
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR----FV---DGG-------VN---PQTSIVIGGCQLENNLLQFDL-ATSRLDFSN 292 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~----~~---~~G-------~~---~~~~~ILG~~~~r~~~vvfDl-~~~riGFa~ 292 (311)
.+|+|+|+|+|.++.++ ++ +.+ +. ..+.||||+.|||++|+|||+ +++|||||+
T Consensus 257 -----~~P~i~f~fgg~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~ 328 (329)
T 1oew_A 257 -----TLPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFAS 328 (329)
T ss_dssp -----CCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEE
T ss_pred -----CCCcEEEEECCEEEEECHHHeeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEec
Confidence 47999999954333333 11 112 11 135899999999999999999 999999995
No 20
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1e-35 Score=277.63 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=176.9
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|++++.+ ..|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+.+... ...
T Consensus 56 ~~~y~~~~SsT~~~~----~~~~~~i~Yg-~Gs~~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~~~~~~~~~ 121 (329)
T 3c9x_A 56 HAIYTPSKSSTSKKV----SGASWSISYG-DGSSSSGDVYTDKVTIGG---------FSVNTQGVESATRVSTEFVQDTV 121 (329)
T ss_dssp SCCBCGGGCTTCEEC----TTCBEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHHCTT
T ss_pred CCcCCcccCcCceEc----CCCeEEEEeC-CCCcEEEEEEEEEEEECC---------EEEcceEEEEEEecCccccccCC
Confidence 457889999998764 2377777764 777899999999999986 3788999999998632111 146
Q ss_pred cceEEeeCCCCCC---------hHHHHhhccC-CCcEEeccCCCCcceEEEcCCCCCCCCcceeeee--ecCCCCCcceE
Q 040428 86 VVGIAGLGRSKVA---------LPSQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS--GFLGEPSVEYF 153 (311)
Q Consensus 86 ~~GIlGLg~~~~S---------l~~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt--~~~~~~~~~Y~ 153 (311)
.+||||||+..+| +..+|.++ + .++||+||.+...|.|+||++|.. ++.++|+ ... ....+|.
T Consensus 122 ~~GilGLg~~~~s~~~~~~~~~~~~~l~~~-i~~~~FS~~l~~~~~G~l~fGg~d~~---~~~g~l~~~p~~-~~~~~~~ 196 (329)
T 3c9x_A 122 ISGLVGLAFDSGNQVRPHPQKTWFSNAASS-LAEPLFTADLRHGQNGSYNFGYIDTS---VAKGPVAYTPVD-NSQGFWE 196 (329)
T ss_dssp CCEEEECSCGGGCCCBSSCCCCHHHHHHTT-SSSSEEEEECCSSSCEEEEESSCCGG---GCSSCEEEEECB-CTTSSCE
T ss_pred CceeEEeCcccccccCCCCCCCHHHHHHHh-cCCCEEEEEecCCCCcEEEEeCcChh---hcccceEEEEcc-CCCceEE
Confidence 8999999997655 44566633 5 789999998766899999999975 4555552 111 2467999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCc
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGF 233 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~ 233 (311)
|.|++|+|+++.+. .. ...+|||||||+++||+++|++|.+++..+. +....+ .....|+.
T Consensus 197 v~l~~i~v~~~~~~--~~--------~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~--~~~~~~-~~~~~C~~------ 257 (329)
T 3c9x_A 197 FTASGYSVGGGKLN--RN--------SIDGIADTGTTLLLLDDNVVDAYYANVQSAQ--YDNQQE-GVVFDCDE------ 257 (329)
T ss_dssp EEECCEEETTCCCC--SC--------CEEEEECTTCCSEEECHHHHHHHHTTCTTCE--EETTTT-EEEEETTC------
T ss_pred EEEeeEEECCEecc--CC--------CceEEEECCCCcEeCCHHHHHHHHHhCCCcE--EcCCCC-EEEEECCC------
Confidence 99999999998653 11 3479999999999999999999887763221 111111 11235752
Q ss_pred cccCCCCCeEEEEEcCCceEEE----ee---cCC-------CC---CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 234 TRIRPFVPQIDLVLQNKNVVWR----FV---DGG-------VN---PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 234 ~~~~~~~P~i~~~f~g~~~~l~----~~---~~G-------~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
.+|+|+|+|+|..+.++ ++ +.| +. ..+.||||+.|||++|+|||++++|||||+
T Consensus 258 -----~~P~i~f~f~g~~~~ip~~~~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~ 328 (329)
T 3c9x_A 258 -----DLPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ 328 (329)
T ss_dssp -----CCCCEEEEETTEEEEECGGGGEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred -----CCCcEEEEECCEEEEECHHHeeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEec
Confidence 47999999985333333 11 112 11 135799999999999999999999999995
No 21
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.8e-34 Score=275.46 Aligned_cols=264 Identities=19% Similarity=0.202 Sum_probs=189.1
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeec-CCCCCCCcceeeCcEEEEeeecccccCCC--
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQS-TNGHNPGRAVTVPNFILLCGSEFVLQGLA-- 83 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~-~~g~~~~~~~~v~~~~FGc~~~~~~~~~~-- 83 (311)
++-|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ .. +.+ .+.|||.... .+++
T Consensus 58 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~Dtv~ig~g~~-------~~~-~~~~~~~~~~--~~~f~~ 120 (395)
T 2qp8_A 58 HRYYQRQLSSTYRDL-----RKGVYVPYT-QG-KWEGELGTDLVSIPHGPN-------VTV-RANIAAITES--DKFFIN 120 (395)
T ss_dssp SCCCCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEECTTSCS-------CEE-EEEEEEEEEE--ESCSCT
T ss_pred cCCcCcccCCCceeC-----CceEEEEEC-Cc-EEEEEEEeEEEEECCCCC-------ceE-EEEEEEEEcc--Cccccc
Confidence 456888888888763 477776653 55 459999999999973 21 122 2578888765 2322
Q ss_pred -CCcceEEeeCCCCCC--------hHHHHhhccC-CCcEEeccCCC------------CcceEEEcCCCCCCCCcceeee
Q 040428 84 -NGVVGIAGLGRSKVA--------LPSQLVAFSL-KRKFALYLSPF------------GNGVIIFSDGPYDLNFDVSNTA 141 (311)
Q Consensus 84 -~~~~GIlGLg~~~~S--------l~~ql~~~gl-~~~FS~cL~~~------------~~G~l~fG~~d~~~~~~~s~~l 141 (311)
...+||||||+..++ ++.+|.++++ .++||+||.+. ..|.|+||++|.. ++.++|
T Consensus 121 ~~~~dGIlGLg~~~~s~~~~~~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~---~~~g~l 197 (395)
T 2qp8_A 121 GSNWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS---LYTGSL 197 (395)
T ss_dssp TCCCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGG---GEEEEE
T ss_pred ccCccceEEcCchhhccCCCCCCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcc---cccCce
Confidence 467999999997654 4457775554 67999999641 4799999999975 566676
Q ss_pred eecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC---
Q 040428 142 SGFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP--- 218 (311)
Q Consensus 142 t~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~--- 218 (311)
+........+|.|.|++|+|+++.+.++...+. ...+|||||||+++||+++|++|.+++.+... ..+.+.
T Consensus 198 ~~~p~~~~~~~~v~l~~i~v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~-~~~~~~~~~ 271 (395)
T 2qp8_A 198 WYTPIRREWYYEVIIVRVEINGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-TEKFPDGFW 271 (395)
T ss_dssp EEEECCSBTTBBCCEEEEEETTEECCCCGGGGG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTT-TSCCCHHHH
T ss_pred EEeccCCCceEEEEEEEEEECCEEcccCccccC-----CceEEEEcCCCcEecCHHHHHHHHHHHhhhcc-cccCCcccc
Confidence 311113457999999999999999877654442 35799999999999999999999999998763 111110
Q ss_pred CCCCcceeeecCCCccccCCCCCeEEEEEcCCc----eEEE------ee--cC---C--C------C-CCcceeecccee
Q 040428 219 VAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKN----VVWR------FV--DG---G--V------N-PQTSIVIGGCQL 274 (311)
Q Consensus 219 ~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~----~~l~------~~--~~---G--~------~-~~~~~ILG~~~~ 274 (311)
......|+...... ...+|+|+|+|++++ +.|. ++ .. + . . ..+.||||+.||
T Consensus 272 ~~~~~~C~~~~~~~----~~~~P~i~f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl 347 (395)
T 2qp8_A 272 LGEQLVCWQAGTTP----WNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIM 347 (395)
T ss_dssp TTCSCEEESTTCCC----GGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHH
T ss_pred ccccccccccccch----HhhCCcEEEEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCCCCcEEEChHHh
Confidence 11245899764321 246899999998862 2343 11 11 1 1 1 135799999999
Q ss_pred eceEEEEECCCCEEEEEecCCCCCCCCCCCcC
Q 040428 275 ENNLLQFDLATSRLDFSNSLLFEQTTCSNFNF 306 (311)
Q Consensus 275 r~~~vvfDl~~~riGFa~~~~~~~~~C~~~~~ 306 (311)
|++|+|||++++||||| +++|.+.+.
T Consensus 348 ~~~yvvfD~~~~rIGfA------~~~c~~~~~ 373 (395)
T 2qp8_A 348 EGFYVVFDRARKRIGFA------VSACHVHDE 373 (395)
T ss_dssp TTEEEEEETTTTEEEEE------EETTCCCCS
T ss_pred CCeeEEEECCCCEEEEE------eccCCCCCC
Confidence 99999999999999999 789997544
No 22
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.4e-35 Score=273.62 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=175.3
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|+ +. ...|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+.+... ...
T Consensus 53 ~~~y~~~~Ss-~~-----~~~~~~~i~Yg-~Gs~~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~~~~~~~~~ 116 (325)
T 1ibq_A 53 HDLYTPSSSA-TK-----LSGYSWDISYG-DGSSASGDVYRDTVTVGG---------VTTNKQAVEAASKISSEFVQDTA 116 (325)
T ss_dssp SCCCBCCSSC-EE-----CTTCBEEEECS-SSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHTSTT
T ss_pred CCCCCchhcC-Cc-----cCCCEEEEEeC-CCCEEEEEEEEeEEEECC---------EEEcceEEEEEEecCccccccCC
Confidence 4567787777 32 13588888774 777899999999999986 3788999999998732111 146
Q ss_pred cceEEeeCCCCCC---------hHHHHhhccC-CCcEEeccCCCCcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEE
Q 040428 86 VVGIAGLGRSKVA---------LPSQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFI 154 (311)
Q Consensus 86 ~~GIlGLg~~~~S---------l~~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V 154 (311)
.+||||||+..++ +..||.++ + .++||+||.+...|.|+||++|.. ++.++|+ ........+|.|
T Consensus 117 ~~GilGLg~~~~s~~~p~~~~~~~~~l~~~-i~~~~FS~~l~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~w~v 192 (325)
T 1ibq_A 117 NDGLLGLAFSSINTVQPKAQTTFFDTVKSQ-LDSPLFAVQLKHDAPGVYDFGYIDDS---KYTGSITYTDADSSQGYWGF 192 (325)
T ss_dssp CCEEEECSCGGGCCCBSSCCCCHHHHHGGG-SSSSEEEEEEETTEEEEEEESSCCGG---GBSSCCEEEECBCTTSSCEE
T ss_pred CceEEEeCcccccccCcCCCCCHHHHHHHh-cCCcEEEEEecCCCCceEEECCcChh---hccCceEEEEcCCCCceEEE
Confidence 8999999997655 45777743 5 799999998756899999999975 4555552 111024679999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|+++.+.. ....+||||||++++||+++|++|.+++..+.. ....+ .....|+.
T Consensus 193 ~l~~i~v~~~~~~~----------~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~--~~~~g-~~~~~C~~------- 252 (325)
T 1ibq_A 193 STDGYSIGDGSSSS----------SGFSAIADTGTTLILLDDEIVSAYYEQVSGAQE--SYEAG-GYVFSCST------- 252 (325)
T ss_dssp EECEEEETTSCCBS----------CCEEEEECTTCCSEEECHHHHHHHHTTSTTCBC--CSSSS-SCEEETTC-------
T ss_pred EECcEEECCeeccC----------CCceEEEeCCCCcEeCCHHHHHHHHHhCCCceE--cCcCC-eEEEEcCC-------
Confidence 99999999986531 135799999999999999999999988743221 11111 12235762
Q ss_pred ccCCCCCeEEEEEcCCceEEE----ee---cCC-------CC---CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 235 RIRPFVPQIDLVLQNKNVVWR----FV---DGG-------VN---PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~~~~l~----~~---~~G-------~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
.+|+|+|+|+|.++.++ ++ +.+ +. ..+.||||+.|||++|+|||++++|||||+
T Consensus 253 ----~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 323 (325)
T 1ibq_A 253 ----DLPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAA 323 (325)
T ss_dssp ----CCCCEEEEETTEEEEECHHHHEEEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ----CCCcEEEEECCEEEEECHHHhcccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeee
Confidence 47999999965333333 11 112 11 135799999999999999999999999995
No 23
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=3e-35 Score=274.63 Aligned_cols=242 Identities=17% Similarity=0.221 Sum_probs=177.5
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..| +++.. .|.+...| +.++++|.+++|+|+|++ ..++++.|||++.+ ...+ ...
T Consensus 58 ~~~y~~~~S-T~~~~-----~~~~~i~Y--g~Gs~~G~~~~Dtv~ig~---------~~~~~~~fg~~~~~-~~~f~~~~ 119 (330)
T 1yg9_A 58 LQKYEKLKP-KYISD-----GNVQVKFF--DTGSAVGRGIEDSLTISQ---------LTTSQQDIVLADEL-SQEVCILS 119 (330)
T ss_dssp CCCCCCSSC-EEEEE-----EEEEEEET--TTEEEEEEEEEEEEEETT---------EEEEEEEEEEEEEE-CTHHHHTT
T ss_pred cCccCCCCC-ceEEC-----CCEEEEEE--CCceEEEEEEEEEEEECC---------EEEcCeEEEEEEEc-cccccccc
Confidence 356788888 77652 35555554 444569999999999986 37889999999987 2211 246
Q ss_pred cceEEeeCCCCCC-------hHHHHhhccC-CCcEEeccCCC--C--cceEEEcCCCCCCCCcceeeee-ecCCCCCcce
Q 040428 86 VVGIAGLGRSKVA-------LPSQLVAFSL-KRKFALYLSPF--G--NGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEY 152 (311)
Q Consensus 86 ~~GIlGLg~~~~S-------l~~ql~~~gl-~~~FS~cL~~~--~--~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y 152 (311)
.+||||||++.++ ++.+|.++++ .++||+||.+. . .|.|+||++|.. ++.++|+ ... ....+|
T Consensus 120 ~~GilGLg~~~~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~w 195 (330)
T 1yg9_A 120 ADVVVGIAAPGCPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWK---YVDGEFTYVPL-VGDDSW 195 (330)
T ss_dssp CSEEEECSCTTSCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGG---GEEEEEEEEEB-SCTTSC
T ss_pred CceEEEcCcchhccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHH---HccCceEEEEC-CCCCEE
Confidence 7999999998876 6778876654 79999999865 2 799999999975 6667773 111 356799
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCC-CC-CcceeeecC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPV-AP-SRACFRLQD 230 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~-~~-~~~C~~~~~ 230 (311)
.|.|++|+|+++.+. . ....+||||||++++||+++|++|.+++.+... ..+. .. ...|+..
T Consensus 196 ~v~l~~i~v~~~~~~-~---------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~~g~~~~~~~~C~~~-- 259 (330)
T 1yg9_A 196 KFRLDGVKIGDTTVA-P---------AGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVE----KTTTRRICKLDCSKI-- 259 (330)
T ss_dssp CEECSEEEETTEEEE-C---------TTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEE----ECSSCEEEEECGGGG--
T ss_pred EEEeCeEEECCEEEc-C---------CCcEEEEecCCccccCCHHHHHHHHHHhCCccc----CCCceEEEEEECCCc--
Confidence 999999999998764 1 135799999999999999999999999854321 1110 11 2346542
Q ss_pred CCccccCCCCCeEEEEEcCCceEEE----eec-C-----CCC---CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 231 IGFTRIRPFVPQIDLVLQNKNVVWR----FVD-G-----GVN---PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 231 ~~~~~~~~~~P~i~~~f~g~~~~l~----~~~-~-----G~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|.++.++ ++. . ++. ..+.||||+.|||++|+|||++++|||||++
T Consensus 260 -------~~~p~i~f~fgg~~~~l~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 328 (330)
T 1yg9_A 260 -------PSLPDVTFVINGRNFNISSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS 328 (330)
T ss_dssp -------GGSCCEEEEETTEEEEECHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred -------cccCcEEEEECCEEEEECHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEEC
Confidence 358999999965333333 121 1 111 2457999999999999999999999999963
No 24
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-34 Score=274.51 Aligned_cols=264 Identities=16% Similarity=0.215 Sum_probs=186.0
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCC---
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLA--- 83 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~--- 83 (311)
+.-|.|..|++++.+ .|.+...|. +| +++|.+++|+|+|++.. ...+ .+.|||.... .+++
T Consensus 50 ~~~f~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~Dtv~i~~~~------~~~~-~~~~~~~~~~--~~~~~~~ 113 (383)
T 2ewy_A 50 DTYFDTERSSTYRSK-----GFDVTVKYT-QG-SWTGFVGEDLVTIPKGF------NTSF-LVNIATIFES--ENFFLPG 113 (383)
T ss_dssp SCCCCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEEETTTE------EEEE-EEEEEEEEEE--ESCSCTT
T ss_pred ccCcccccCccceeC-----CceEEEEEC-Cc-EEEEEEEEEEEEECCCc------ccee-EEEEEEEEee--cceeecc
Confidence 455788888888764 477776653 55 46999999999997520 1122 3678998765 3332
Q ss_pred CCcceEEeeCCCCCC--------hHHHHhhcc-CCCcEEeccCC--------C-CcceEEEcCCCCCCCCcceeeeeecC
Q 040428 84 NGVVGIAGLGRSKVA--------LPSQLVAFS-LKRKFALYLSP--------F-GNGVIIFSDGPYDLNFDVSNTASGFL 145 (311)
Q Consensus 84 ~~~~GIlGLg~~~~S--------l~~ql~~~g-l~~~FS~cL~~--------~-~~G~l~fG~~d~~~~~~~s~~lt~~~ 145 (311)
...+||||||+..++ +..+|.+++ ++++||+||.. . ..|.|+||++|.. ++.++|+...
T Consensus 114 ~~~dGilGLg~~~~s~~~~~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p 190 (383)
T 2ewy_A 114 IKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPS---LYKGDIWYTP 190 (383)
T ss_dssp CCCCEEEECSCGGGCSSCTTSCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGG---GCCSCEEEEE
T ss_pred CcCceEEecCchhcccccccccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchh---hccCccEEEe
Confidence 357999999998764 344666333 46899998842 1 5899999999964 4555662111
Q ss_pred CCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC---CCCC
Q 040428 146 GEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP---VAPS 222 (311)
Q Consensus 146 ~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~---~~~~ 222 (311)
.....+|.|.|++|+|+++.+.++...+. ...+|||||||+++||+++|++|.+++.+... .++.+. ....
T Consensus 191 ~~~~~~~~v~l~~i~v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~ 264 (383)
T 2ewy_A 191 IKEEWYYQIEILKLEIGGQSLNLDCREYN-----ADKAIVDSGTTLLRLPQKVFDAVVEAVARASL-IPEFSDGFWTGSQ 264 (383)
T ss_dssp CSSBTTBBCCEEEEEETTEECCCCTTTTT-----SSCEEECTTCSSEEEEHHHHHHHHHHHHHTTC-SSCCCHHHHHTSE
T ss_pred cCCCceEEEEEEEEEECCEEccccccccC-----CccEEEEcCCccccCCHHHHHHHHHHHhhhcc-cccCccccccccc
Confidence 12457999999999999999876654432 35799999999999999999999999998763 211111 0124
Q ss_pred cceeeecCCCccccCCCCCeEEEEEcCC----ceEEE------ee--c---CC-------CC-CCcceeeccceeeceEE
Q 040428 223 RACFRLQDIGFTRIRPFVPQIDLVLQNK----NVVWR------FV--D---GG-------VN-PQTSIVIGGCQLENNLL 279 (311)
Q Consensus 223 ~~C~~~~~~~~~~~~~~~P~i~~~f~g~----~~~l~------~~--~---~G-------~~-~~~~~ILG~~~~r~~~v 279 (311)
..|+...... ...+|.|+|+|+++ .+.|. ++ . .+ +. ..+.||||+.|||++|+
T Consensus 265 ~~C~~~~~~~----~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~~~~~ILG~~fl~~~yv 340 (383)
T 2ewy_A 265 LACWTNSETP----WSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTNALVIGATVMEGFYV 340 (383)
T ss_dssp EEEECSSSCG----GGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEESSCEEECHHHHTTEEE
T ss_pred cccccCCccc----HhhCCcEEEEECCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCCCCcEEEChHHhCCeeE
Confidence 5899764321 24689999999885 13343 11 1 11 11 13579999999999999
Q ss_pred EEECCCCEEEEEecCCCCCCCCCCCc
Q 040428 280 QFDLATSRLDFSNSLLFEQTTCSNFN 305 (311)
Q Consensus 280 vfDl~~~riGFa~~~~~~~~~C~~~~ 305 (311)
|||++++||||| +++|...+
T Consensus 341 vfD~~~~rIGfA------~~~c~~~~ 360 (383)
T 2ewy_A 341 IFDRAQKRVGFA------ASPCAEIA 360 (383)
T ss_dssp EEETTTTEEEEE------ECTTCBSS
T ss_pred EEECCCCeEEEE------eccCCCcC
Confidence 999999999999 88998654
No 25
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=1e-34 Score=270.16 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=173.2
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|+ +. ...|.+...|. +|+.++|.+++|+|+|++ .+++++.|||++.+.+... ...
T Consensus 54 ~~~y~~~~Ss-~~-----~~~~~~~i~Yg-~Gs~~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~~~~~~~~~ 117 (323)
T 1izd_A 54 HDYYTPGSSA-QK-----IDGATWSISYG-DGSSASGDVYKDKVTVGG---------VSYDSQAVESAEKVSSEFTQDTA 117 (323)
T ss_dssp CCCBCCCTTC-EE-----EEEEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHHCTT
T ss_pred CCCCCccccC-Cc-----cCCCeEEEEcC-CCCeEEEEEEEEEEEECC---------EEECceEEEEEEeccccccccCC
Confidence 3567777777 32 13577777764 777799999999999986 4788999999998732111 146
Q ss_pred cceEEeeCCCCCC---------hHHHHhhccC-CCcEEeccCCCCcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEE
Q 040428 86 VVGIAGLGRSKVA---------LPSQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFI 154 (311)
Q Consensus 86 ~~GIlGLg~~~~S---------l~~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V 154 (311)
.+||||||++.+| +..+|.++ + .++||+||.+...|.|+||++|.. ++.++|+ ........+|.|
T Consensus 118 ~~GilGLg~~~~s~~~p~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~w~v 193 (323)
T 1izd_A 118 NDGLLGLAFSSINTVQPTPQKTFFDNVKSS-LSEPIFAVALKHNAPGVYDFGYTDSS---KYTGSITYTDVDNSQGFWGF 193 (323)
T ss_dssp CCEEEECSCGGGCCCBSSCCCCHHHHHGGG-SSSSEEEEECCTTSCEEEEESSCCTT---SEEEEEEEEECBCTTSSCEE
T ss_pred CceEEecCcccccccCCCCCCCHHHHHHHh-ccCcEEEEEccCCCCCEEEECCcCcc---ccccceEEEECCCCCceEEE
Confidence 7999999997655 34667643 5 799999998766899999999975 6667773 111024679999
Q ss_pred EEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCcc
Q 040428 155 GVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFT 234 (311)
Q Consensus 155 ~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 234 (311)
.|++|+|++ .+. . ....+|||||||+++||+++|++|.+++..+. +....+ .....|+.
T Consensus 194 ~l~~i~v~~-~~~--~--------~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~--~~~~~g-~~~~~C~~------- 252 (323)
T 1izd_A 194 TADGYSIGS-DSS--S--------DSITGIADTGTTLLLLDDSIVDAYYEQVNGAS--YDSSQG-GYVFPSSA------- 252 (323)
T ss_dssp EESEEEETT-EEE--C--------CCEEEEECTTCCSEEECHHHHHHHHTTSTTCE--EETTTT-EEEEETTC-------
T ss_pred EECeEEECC-ccc--C--------CCceEEEeCCCcceeCCHHHHHHHHHhCCCcE--EcCcCC-EEEEECCC-------
Confidence 999999999 543 1 13479999999999999999999988774221 111111 11224652
Q ss_pred ccCCCCCeEEEEEcCCceEEE----ee-c--CC-----CC---CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 235 RIRPFVPQIDLVLQNKNVVWR----FV-D--GG-----VN---PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 235 ~~~~~~P~i~~~f~g~~~~l~----~~-~--~G-----~~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
.+|+|+|+|+|.++.++ ++ . .+ +. ..+.||||+.|||++|+|||++++|||||+
T Consensus 253 ----~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~ 321 (323)
T 1izd_A 253 ----SLPDFSVTIGDYTATVPGEYISFADVGNGQTFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAA 321 (323)
T ss_dssp ----CCCCEEEEETTEEEEECHHHHEEEECSTTEEEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ----CCceEEEEECCEEEecCHHHeEEecCCCCeEEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEee
Confidence 47999999955333333 11 1 11 11 146799999999999999999999999995
No 26
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=7.6e-34 Score=275.98 Aligned_cols=268 Identities=18% Similarity=0.180 Sum_probs=193.1
Q ss_pred CCCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CC
Q 040428 6 IKQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-AN 84 (311)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~ 84 (311)
....|.|..|+++..+ .|.+...|. +| +++|.+++|+|+|++.. .+.+ .+.|+|+........ ..
T Consensus 110 ~~~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~Dtv~ig~~~------~~~~-~~~~~~~~~~~~~~~~~~ 175 (455)
T 3lpj_A 110 LHRYYQRQLSSTYRDL-----RKGVYVPYT-QG-KWEGELGTDLVSIPHGP------NVTV-RANIAAITESDKFFINGS 175 (455)
T ss_dssp CSCCCCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEECTTSC------SCEE-EEEEEEEEEEESCSCTTC
T ss_pred cCCcccCCCCCCcccC-----CccEEEEeC-Ce-EEEEEEEEEEEEECCCc------ceee-EEEEEEEEccCcccccCC
Confidence 3456888888888764 367766653 44 56999999999998521 1233 357999887632111 14
Q ss_pred CcceEEeeCCCCCC--------hHHHHhhccC-CCcEEeccCC------------CCcceEEEcCCCCCCCCcceeeeee
Q 040428 85 GVVGIAGLGRSKVA--------LPSQLVAFSL-KRKFALYLSP------------FGNGVIIFSDGPYDLNFDVSNTASG 143 (311)
Q Consensus 85 ~~~GIlGLg~~~~S--------l~~ql~~~gl-~~~FS~cL~~------------~~~G~l~fG~~d~~~~~~~s~~lt~ 143 (311)
..+||||||+..++ ++.+|.++++ .++||+||.+ ...|.|+||++|.. +|.++|+.
T Consensus 176 ~~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~ 252 (455)
T 3lpj_A 176 NWEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS---LYTGSLWY 252 (455)
T ss_dssp CCCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGG---GEEEEEEE
T ss_pred CcceEEEeCccccccccCCCCcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcc---cccCceEE
Confidence 67999999997654 5567875654 6799999963 14899999999975 66777731
Q ss_pred cCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC---CC
Q 040428 144 FLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP---VA 220 (311)
Q Consensus 144 ~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~---~~ 220 (311)
.......+|.|.|++|+|+++.+.++...+. ...+|||||||+++||+++|++|.+++.+... ..+... ..
T Consensus 253 ~p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~-~~~~~~~~~~g 326 (455)
T 3lpj_A 253 TPIRREWYYEVIIVRVEINGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-TEKFPDGFWLG 326 (455)
T ss_dssp EECCSBTTBBCCEEEEEETTEECCCCGGGGG-----SSCEEECTTSSSEEEEHHHHHHHHHHHHHHTT-TSCCCHHHHTT
T ss_pred EecCCCceeEEEEeEEEECCEEccccccccC-----CCeEEEECCCcceeCCHHHHHHHHHHhhhhcc-ccccCcccccC
Confidence 1113467999999999999999877654332 35799999999999999999999999998863 111111 12
Q ss_pred CCcceeeecCCCccccCCCCCeEEEEEcCCc------eEEE----ee--c-C-C---C------C-CCcceeeccceeec
Q 040428 221 PSRACFRLQDIGFTRIRPFVPQIDLVLQNKN------VVWR----FV--D-G-G---V------N-PQTSIVIGGCQLEN 276 (311)
Q Consensus 221 ~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~------~~l~----~~--~-~-G---~------~-~~~~~ILG~~~~r~ 276 (311)
....|+...... ...+|+|+|+|++.. +.+. ++ + . + . . ..+.||||+.|||+
T Consensus 327 ~~~~C~~~~~~~----~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~~~~~~ILG~~fl~~ 402 (455)
T 3lpj_A 327 EQLVCWQAGTTP----WNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEG 402 (455)
T ss_dssp CSCEEESTTCCC----GGGSCCEEEEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEESSCEEECHHHHTT
T ss_pred cceecccccCCc----hhcCCcEEEEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEeccCCCCcEEEChHHhCC
Confidence 357899865322 246899999999863 3333 21 1 1 1 1 1 24579999999999
Q ss_pred eEEEEECCCCEEEEEecCCCCCCCCCCCcC
Q 040428 277 NLLQFDLATSRLDFSNSLLFEQTTCSNFNF 306 (311)
Q Consensus 277 ~~vvfDl~~~riGFa~~~~~~~~~C~~~~~ 306 (311)
+|+|||++++||||| +++|+..+.
T Consensus 403 ~yvvfD~~~~rIGfA------~~~c~~~~~ 426 (455)
T 3lpj_A 403 FYVVFDRARKRIGFA------VSACHVHDE 426 (455)
T ss_dssp EEEEEETTTTEEEEE------EETTCCCCS
T ss_pred eEEEEECCCCEEEEE------ecccccccc
Confidence 999999999999999 899987763
No 27
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=4.3e-34 Score=279.07 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=131.8
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 95 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~Dtv~ig~---------~~v~~~~Fg~a~~~~~~~f~~~~~ 158 (478)
T 1qdm_A 95 SRYKAGASSTYKKN-----GKPAAIQYG-TG-SIAGYFSEDSVTVGD---------LVVKDQEFIEATKEPGITFLVAKF 158 (478)
T ss_dssp CCBCGGGCTTCBCC-----CCEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEEEEEEEEEECCBSHHHHCSS
T ss_pred CCCCcccCCCeeeC-----CcEEEEEcC-CC-CeEEEEEEEEEEECC---------eEECCEEEEEEEecCCcccccccc
Confidence 46788888887642 356655542 44 589999999999986 3788999999998632211 2467
Q ss_pred ceEEeeCCCCCCh------HHHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceE
Q 040428 87 VGIAGLGRSKVAL------PSQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYF 153 (311)
Q Consensus 87 ~GIlGLg~~~~Sl------~~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~ 153 (311)
+||||||++.+|+ ..+|.++|+ .++||+||++. .+|.|+||++|.. ++.++++ +.. ....||.
T Consensus 159 dGIlGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~---~~~G~l~~~pv-~~~~~w~ 234 (478)
T 1qdm_A 159 DGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPK---HYVGEHTYVPV-TQKGYWQ 234 (478)
T ss_dssp SEEEECSCGGGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTT---SEEEEEEEEEE-EEETTEE
T ss_pred cceecccccccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHh---hcCCCceEEec-cCCCeEE
Confidence 9999999988774 345666675 68999999874 4899999999975 5666663 111 2357999
Q ss_pred EEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHh
Q 040428 154 IGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFAN 208 (311)
Q Consensus 154 V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~ 208 (311)
|.|++|+|+++.+.+.. +..++|||||||+++||+++|++|.+++.+
T Consensus 235 v~l~~i~v~g~~~~~~~--------~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a 281 (478)
T 1qdm_A 235 FDMGDVLVGGKSTGFCA--------GGCAAIADSGTSLLAGPTAIITEINEKIGA 281 (478)
T ss_dssp EEECCEEETTEECSTTT--------TCEEEEECSSCCSEEECHHHHHHHHHHHTC
T ss_pred EEEeEEEECCEEEeecC--------CCceEEEcCCCCceeCCHHHHHHHHHHhCc
Confidence 99999999998876432 235799999999999999999999999864
No 28
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=1.8e-33 Score=269.11 Aligned_cols=267 Identities=18% Similarity=0.177 Sum_probs=189.5
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANG 85 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~ 85 (311)
...|.|..|+++..+ .|.+...|. +| +++|.+++|+|+|++.. ...+ .+.|+|+........ ...
T Consensus 65 ~~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~D~v~ig~~~------~~~~-~~~~~~~~~~~~~~~~~~~ 130 (402)
T 3vf3_A 65 HRYYQRQLSSTYRDL-----RKGVYVPYT-QG-KWEGELGTDLVSIPHGP------NVTV-RANIAAITESDKFFINGSN 130 (402)
T ss_dssp SCCCCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEECTTSC------SCEE-EEEEEEEEEEESCSCTTCC
T ss_pred cCCcCcccCcccccC-----CCEEEEEEC-cE-EEEEEEEEEEEEECCcc------ccce-eeeEEEEEccccccccCCC
Confidence 456888888888764 466766653 44 57999999999998421 1122 245888877631111 146
Q ss_pred cceEEeeCCCCC--------ChHHHHhhccC-CCcEEeccCC-----------C-CcceEEEcCCCCCCCCcceeeeeec
Q 040428 86 VVGIAGLGRSKV--------ALPSQLVAFSL-KRKFALYLSP-----------F-GNGVIIFSDGPYDLNFDVSNTASGF 144 (311)
Q Consensus 86 ~~GIlGLg~~~~--------Sl~~ql~~~gl-~~~FS~cL~~-----------~-~~G~l~fG~~d~~~~~~~s~~lt~~ 144 (311)
.+||||||+..+ +++.+|.++++ .++||+||.. . ..|.|+||++|.. ++.++|+..
T Consensus 131 ~dGIlGLg~~~~s~~~~~~~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~ 207 (402)
T 3vf3_A 131 WEGILGLAYAEIARPDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHS---LYTGSLWYT 207 (402)
T ss_dssp CCEEEECSCGGGCSSCTTSCCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGG---GEEEEEEEE
T ss_pred ccceEEcCchhhcccCCcCCcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcc---cccCceEEE
Confidence 799999999754 45567875664 6799999963 1 4799999999975 667777311
Q ss_pred CCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCC---CCC
Q 040428 145 LGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSP---VAP 221 (311)
Q Consensus 145 ~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~---~~~ 221 (311)
......+|.|.|++|+|+++.+.++...+. ...+|||||||+++||+++|++|.+++.+... ..+... ...
T Consensus 208 p~~~~~~w~v~l~~i~v~g~~~~~~~~~~~-----~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~-~~~~~~~~~~~~ 281 (402)
T 3vf3_A 208 PIRREWYYEVIIVRVEINGQDLKMDCKEYN-----YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASS-TEKFPDGFWLGE 281 (402)
T ss_dssp ECSSBTTBEECEEEEEETTEECCCCGGGGG-----SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTT-TSCCCTTGGGTC
T ss_pred eCCcCcEEEEEEeEEEECCEEecccccccC-----CCeEEEECCCCcccCCHHHHHHHHHHHhhhcc-ccccCccccccc
Confidence 113467999999999999999877654332 35799999999999999999999999998863 111111 123
Q ss_pred CcceeeecCCCccccCCCCCeEEEEEcCCc------eEEE----eec--C-----CC------C-CCcceeeccceeece
Q 040428 222 SRACFRLQDIGFTRIRPFVPQIDLVLQNKN------VVWR----FVD--G-----GV------N-PQTSIVIGGCQLENN 277 (311)
Q Consensus 222 ~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~------~~l~----~~~--~-----G~------~-~~~~~ILG~~~~r~~ 277 (311)
...|+...... ...+|+|+|+|++++ +.+. ++. . +. . ..+.||||+.|||++
T Consensus 282 ~~~C~~~~~~~----~~~~P~i~f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~fl~~~ 357 (402)
T 3vf3_A 282 QLVCWQAGTTP----WNIFPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQSSTGTVMGAVIMEGF 357 (402)
T ss_dssp SCEEEETTCCC----GGGSCCEEEEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEEESSCEEECHHHHTTE
T ss_pred cccccccccch----HhhCCceEEEEecCCCCceEEEEECHHHheehhccCCCCCceEEEEeccCCCCcEEEChHHhCCe
Confidence 57899865322 246899999999863 3332 221 1 01 1 245799999999999
Q ss_pred EEEEECCCCEEEEEecCCCCCCCCCCCcC
Q 040428 278 LLQFDLATSRLDFSNSLLFEQTTCSNFNF 306 (311)
Q Consensus 278 ~vvfDl~~~riGFa~~~~~~~~~C~~~~~ 306 (311)
|+|||++++||||| +++|+..+.
T Consensus 358 yvvfD~~~~rIGfA------~~~c~~~~~ 380 (402)
T 3vf3_A 358 YVVFDRARKRIGFA------VSACHVHDE 380 (402)
T ss_dssp EEEEEGGGTEEEEE------EETTCCBCS
T ss_pred EEEEECCCCEEEEE------ecccCcccC
Confidence 99999999999999 899997654
No 29
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=4.1e-34 Score=271.45 Aligned_cols=236 Identities=12% Similarity=0.143 Sum_probs=175.9
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeec----ccccCC-
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSE----FVLQGL- 82 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~----~~~~~~- 82 (311)
..|.|..|+++... .|.+...|. +| +++|.+++|+|+|++ ..+++ .|||++. +. .+
T Consensus 104 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~Dtv~ig~---------~~v~~-~Fg~~~~~~~~~~--~f~ 164 (375)
T 1miq_A 104 NLYDSSKSKSYEKD-----GTKVDITYG-SG-TVKGFFSKDLVTLGH---------LSMPY-KFIEVTDTDDLEP--IYS 164 (375)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEEET-TE-EEEEEEEEEEEEETT---------EEEEE-EEEEEEECGGGTT--HHH
T ss_pred CcCCCccCCceEEC-----CcEEEEEeC-CC-eEEEEEEEEEEEEcC---------ceECc-EEEEEEecccccc--ccc
Confidence 45777777776653 466666653 44 489999999999986 37888 9999998 42 11
Q ss_pred CCCcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcc
Q 040428 83 ANGVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVE 151 (311)
Q Consensus 83 ~~~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~ 151 (311)
....+||||||++.+| ++.+|.++|+ .++||+||++. ..|.|+||++|.. ++.++++ ... ....+
T Consensus 165 ~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~ 240 (375)
T 1miq_A 165 SVEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEK---FYEGNITYEKL-NHDLY 240 (375)
T ss_dssp HSCCCEEEECSSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGG---GEEEEEEEEEB-SSSSS
T ss_pred cCCCceEEeCCCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHH---HcCCceEEEec-CCCce
Confidence 2468999999998765 5567776664 69999999886 5899999999975 5666773 111 34679
Q ss_pred eEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCC
Q 040428 152 YFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDI 231 (311)
Q Consensus 152 Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 231 (311)
|.|.|+ |+|+++.+ . ...+||||||++++||+++|++|.+++.+... ...+ .....|+. .
T Consensus 241 w~v~l~-i~v~g~~~--~----------~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~---~~~g-~~~~~C~~-~-- 300 (375)
T 1miq_A 241 WQIDLD-VHFGKQTM--E----------KANVIVDSGTTTITAPSEFLNKFFANLNVIKV---PFLP-FYVTTCDN-K-- 300 (375)
T ss_dssp SEEEEE-EEETTEEE--E----------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEC---TTSS-CEEEETTC-T--
T ss_pred EEEEEE-EEECCEEc--c----------cceEEecCCCccEEcCHHHHHHHHHHhCCccc---CCCC-eEEEECCC-C--
Confidence 999999 99999886 1 24799999999999999999999999965432 1111 12356875 1
Q ss_pred CccccCCCCCeEEEEEcCCceEEE----eec---CC-------CCC----CcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 232 GFTRIRPFVPQIDLVLQNKNVVWR----FVD---GG-------VNP----QTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 232 ~~~~~~~~~P~i~~~f~g~~~~l~----~~~---~G-------~~~----~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
.+|+|+|+|+|..+.+. ++. .| +.+ .+.||||+.|||++|+|||++++|||||++
T Consensus 301 -------~~P~i~f~f~g~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~ 373 (375)
T 1miq_A 301 -------EMPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIA 373 (375)
T ss_dssp -------TCCCEEEECSSCEEEECGGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred -------CCCcEEEEECCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEc
Confidence 57999999976444443 221 12 111 268999999999999999999999999964
No 30
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=1.1e-34 Score=270.00 Aligned_cols=239 Identities=13% Similarity=0.110 Sum_probs=169.0
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
+.|.|..|+ +. ...|.+...|. +|+.++|.+++|+|+|++ ..++++.|||++.+.+... ....
T Consensus 55 ~~y~~~~Ss-~~-----~~~~~~~i~Yg-~Gs~~~G~~~~D~v~ig~---------~~v~~~~fg~~~~~~~~~~~~~~~ 118 (323)
T 1bxo_A 55 SVYNPSATG-KE-----LSGYTWSISYG-DGSSASGNVFTDSVTVGG---------VTAHGQAVQAAQQISAQFQQDTNN 118 (323)
T ss_dssp CCBCHHHHC-EE-----EEEEEEEEECT-TSCEEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHTCTTC
T ss_pred CCCCcccCC-cc-----cCCCeEEEEeC-CCCeEEEEEEEEEEEECC---------EEECcEEEEEEEecCcccccCCCC
Confidence 445565555 22 13477777664 777799999999999986 3788999999998732111 1467
Q ss_pred ceEEeeCCCCCC---------hHHHHhhccC-CCcEEeccCCCCcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEEE
Q 040428 87 VGIAGLGRSKVA---------LPSQLVAFSL-KRKFALYLSPFGNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFIG 155 (311)
Q Consensus 87 ~GIlGLg~~~~S---------l~~ql~~~gl-~~~FS~cL~~~~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V~ 155 (311)
+||||||++.++ +..+|.++ + .++||+||.+...|.|+||++|.. ++.++|+ ........+|.|.
T Consensus 119 ~GilGLg~~~~s~~~~~~~~~~~~~l~~~-i~~~~FS~~L~~~~~G~l~fGg~d~~---~~~g~l~~~p~~~~~~~w~v~ 194 (323)
T 1bxo_A 119 DGLLGLAFSSINTVQPQSQTTFFDTVKSS-LAQPLFAVALKHQQPGVYDFGFIDSS---KYTGSLTYTGVDNSQGFWSFN 194 (323)
T ss_dssp SEEEECSCGGGCCCBSSCCCCHHHHHGGG-BSSSEEEEECCSSSCEEEEESSCCGG---GBSSCCEEEECBCTTSSCEEE
T ss_pred ceEEEeCcccccccccCCCCCHHHHHHHh-cCCcEEEEEEeCCCCceEEEeCcChh---hccCceEEEECCCCCCeEEEE
Confidence 999999997654 45667633 5 699999998756899999999975 4555552 1110246799999
Q ss_pred EEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCCccc
Q 040428 156 VASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIGFTR 235 (311)
Q Consensus 156 l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 235 (311)
|++|+|++ +. .. ...+|||||||+++||+++|++|.+++..+. +....+ .....|+.
T Consensus 195 l~~i~v~~--~~--~~--------~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~--~~~~~g-~~~~~C~~-------- 251 (323)
T 1bxo_A 195 VDSYTAGS--QS--GD--------GFSGIADTGTTLLLLDDSVVSQYYSQVSGAQ--QDSNAG-GYVFDCST-------- 251 (323)
T ss_dssp EEEEEETT--EE--EE--------EEEEEECTTCSSEEECHHHHHHHHTTSTTCE--EETTTT-EEEECTTC--------
T ss_pred EeeEEECC--cc--CC--------CceEEEeCCCCceeCCHHHHHHHHHhCCCce--EcCcCC-EEEEECCC--------
Confidence 99999999 21 11 2479999999999999999999988773221 111111 11235752
Q ss_pred cCCCCCeEEEEEcCCceEEE----ee-c-CC--C-----C---CCcceeeccceeeceEEEEECCCCEEEEEe
Q 040428 236 IRPFVPQIDLVLQNKNVVWR----FV-D-GG--V-----N---PQTSIVIGGCQLENNLLQFDLATSRLDFSN 292 (311)
Q Consensus 236 ~~~~~P~i~~~f~g~~~~l~----~~-~-~G--~-----~---~~~~~ILG~~~~r~~~vvfDl~~~riGFa~ 292 (311)
.+|+|+|+|+|.++.++ ++ . .+ . . ..+.||||+.|||++|+|||++++|||||+
T Consensus 252 ---~~P~i~f~fgg~~~~l~~~~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~ 321 (323)
T 1bxo_A 252 ---NLPDFSVSISGYTATVPGSLINYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAP 321 (323)
T ss_dssp ---CCCCEEEEETTEEEEECHHHHEEEECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ---CCceEEEEECCEEEEECHHHeEEeccCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEec
Confidence 47999999965333333 11 1 12 1 1 135799999999999999999999999995
No 31
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=2e-33 Score=263.01 Aligned_cols=241 Identities=14% Similarity=0.179 Sum_probs=172.2
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCCCCCcc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGLANGVV 87 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~~~~~~ 87 (311)
..|.|..|++. ..|.+...|. +|+ ++|.+++|+|+|++ ..++++.|||++.+ .+ +...+
T Consensus 44 ~~y~~s~Ss~~-------~~~~~~i~Yg-~Gs-~~G~~~~Dtv~~g~---------~~v~~~~fg~~~~~--~~-~~~~~ 102 (340)
T 1wkr_A 44 KSYVKTSTSSA-------TSDKVSVTYG-SGS-FSGTEYTDTVTLGS---------LTIPKQSIGVASRD--SG-FDGVD 102 (340)
T ss_dssp SCCCCCTTCEE-------EEEEEEEECS-SCE-EEEEEEEEEEEETT---------EEEEEEEEEEEEEE--ES-CTTCS
T ss_pred CccCCcCCccc-------cCceEEEEEC-CcE-EEEEEEEEEEEECC---------EEEcceEEEEEEcc--CC-CcCCC
Confidence 34556555432 3577777653 554 89999999999986 47899999999987 33 34689
Q ss_pred eEEeeCCCCCCh--------------HHHHhhccC--CCcEEeccCCC-----CcceEEEcCCCCCCCCcceeeee----
Q 040428 88 GIAGLGRSKVAL--------------PSQLVAFSL--KRKFALYLSPF-----GNGVIIFSDGPYDLNFDVSNTAS---- 142 (311)
Q Consensus 88 GIlGLg~~~~Sl--------------~~ql~~~gl--~~~FS~cL~~~-----~~G~l~fG~~d~~~~~~~s~~lt---- 142 (311)
||||||+..+|+ +.+|.++|+ +++||+||.+. ..|.|+||++|.. ++.++|+
T Consensus 103 GilGLg~~~~s~~~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~ 179 (340)
T 1wkr_A 103 GILGVGPVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSS---KYTGSITYTPI 179 (340)
T ss_dssp EEEECSCGGGGTTSEESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGG---GCSSCCEEEEC
T ss_pred cEEECCccccccccccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChh---hcccceEEEEC
Confidence 999999976654 456666665 68999999852 4799999999964 4444442
Q ss_pred ecCCCCCcceEEEEEEEEEcc-eEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCC
Q 040428 143 GFLGEPSVEYFIGVASVNVNG-KAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAP 221 (311)
Q Consensus 143 ~~~~~~~~~Y~V~l~gIsvg~-~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~ 221 (311)
..++....||.|. ++|+|++ +.+.. .+.+||||||++++||+++|++|.+++.+... . .....
T Consensus 180 ~~~~~~~~~w~v~-~~i~v~~~~~l~~-----------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~---~-~~g~~ 243 (340)
T 1wkr_A 180 TSTSPASAYWGIN-QSIRYGSSTSILS-----------STAGIVDTGTTLTLIASDAFAKYKKATGAVAD---N-NTGLL 243 (340)
T ss_dssp CSSTTGGGSSEEE-EEEEETTTEEEEE-----------EEEEEECTTBCSEEECHHHHHHHHHHHTCEEC---T-TTSSE
T ss_pred ccCCCCcceEEEE-eeEEECCCeEccC-----------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEc---C-CCCeE
Confidence 2211226799999 9999998 77642 13699999999999999999999988865442 0 11111
Q ss_pred CcceeeecCCCccccCCCCCeEEEEEcCCceEEE----eec-------C---CC--------C-C---Ccceeeccceee
Q 040428 222 SRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR----FVD-------G---GV--------N-P---QTSIVIGGCQLE 275 (311)
Q Consensus 222 ~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~----~~~-------~---G~--------~-~---~~~~ILG~~~~r 275 (311)
...|... ..+|+|+|+|++..+.+. ++. + +. . + ...||||+.|||
T Consensus 244 ~~~C~~~---------~~~p~i~f~f~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~ 314 (340)
T 1wkr_A 244 RLTTAQY---------ANLQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLE 314 (340)
T ss_dssp EECHHHH---------HTCCCEEEEETTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHT
T ss_pred Eeecccc---------ccCCcEEEEECCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhh
Confidence 2356542 257999999976433332 111 0 11 0 1 236999999999
Q ss_pred ceEEEEECCCCEEEEEecCCCCCCCCCC
Q 040428 276 NNLLQFDLATSRLDFSNSLLFEQTTCSN 303 (311)
Q Consensus 276 ~~~vvfDl~~~riGFa~~~~~~~~~C~~ 303 (311)
++|+|||++++||||| ++.|..
T Consensus 315 ~~y~vfD~~~~~igfA------~~~~~~ 336 (340)
T 1wkr_A 315 RFYSVYDTTNKRLGLA------TTSFTT 336 (340)
T ss_dssp SEEEEEETTTTEEEEE------ECTTTT
T ss_pred heEEEEeCCCCeEEEE------ecCCCC
Confidence 9999999999999999 677764
No 32
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=2.4e-33 Score=271.66 Aligned_cols=239 Identities=13% Similarity=0.154 Sum_probs=174.5
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeeccc--ccCC-C
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFV--LQGL-A 83 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~--~~~~-~ 83 (311)
...+.|..|+++... .|.+...|. +|+ ++|.+++|+|+|++ ..++ +.|||++.+. +..+ .
T Consensus 179 ~~~ydps~SsT~~~~-----~~~~~i~Yg-dGs-~~G~~~~Dtv~ig~---------~~v~-~~Fg~a~~~~~~g~~f~~ 241 (453)
T 2bju_A 179 KHLYDSSKSRTYEKD-----GTKVEMNYV-SGT-VSGFFSKDLVTVGN---------LSLP-YKFIEVIDTNGFEPTYTA 241 (453)
T ss_dssp SCCBCGGGCTTCEEE-----EEEEEEECS-SSE-EEEEEEEEEEEETT---------EEEE-EEEEEEEECGGGTTHHHH
T ss_pred CCcCCCccCCceeEC-----CcEEEEEcC-CCC-eEEEEEEEEEEEeC---------cEEE-EEEEEEEEecccCccccc
Confidence 356778888887653 477776653 555 89999999999986 3788 9999999873 2111 2
Q ss_pred CCcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcce
Q 040428 84 NGVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEY 152 (311)
Q Consensus 84 ~~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y 152 (311)
...+||||||++.+| ++.+|.++|+ .++||+||++. ..|.|+||++|.. ++.++++ ... ....+|
T Consensus 242 ~~~dGIlGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~---~y~G~l~~~pv-~~~~~w 317 (453)
T 2bju_A 242 STFDGILGLGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEER---FYEGPLTYEKL-NHDLYW 317 (453)
T ss_dssp SSCCEEEECSCGGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGG---GEEEEEEEEEE-EEETTE
T ss_pred cCCceeEeccCCcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHH---HcCCceEEEec-CCCceE
Confidence 468999999997654 4567776664 69999999875 5899999999975 5666763 111 235799
Q ss_pred EEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCCC
Q 040428 153 FIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDIG 232 (311)
Q Consensus 153 ~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (311)
.|.|+ |+|++ .+ + . ..++|||||||+++||+++|++|.+++.+.. ...+......|+.
T Consensus 318 ~V~l~-I~Vgg-~~-~--~--------~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~----~~~g~~~~v~C~~----- 375 (453)
T 2bju_A 318 QITLD-AHVGN-IM-L--E--------KANCIVDSGTSAITVPTDFLNKMLQNLDVIK----VPFLPFYVTLCNN----- 375 (453)
T ss_dssp EEEEE-EEETT-EE-E--E--------EEEEEECTTCCSEEECHHHHHHHTTTSSCEE----CTTSSCEEEETTC-----
T ss_pred EEEEE-EEECc-EE-e--c--------cccEEEcCCCCeEecCHHHHHHHHHHhCCcc----cCCCceEEEecCC-----
Confidence 99999 99999 33 1 1 2479999999999999999999988765421 1111122346765
Q ss_pred ccccCCCCCeEEEEEcCCceEEE----eec--C-C-------CCC----CcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 233 FTRIRPFVPQIDLVLQNKNVVWR----FVD--G-G-------VNP----QTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 233 ~~~~~~~~P~i~~~f~g~~~~l~----~~~--~-G-------~~~----~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|..+.++ ++. . | +.+ .+.||||+.|||++|+|||++++|||||++
T Consensus 376 -----~~~P~itf~fgg~~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~ 449 (453)
T 2bju_A 376 -----SKLPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALA 449 (453)
T ss_dssp -----TTCCCEEEECSSCEEEECHHHHEEECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred -----CCCCcEEEEECCEEEEECHHHhEeecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEc
Confidence 157999999976444444 221 1 2 111 348999999999999999999999999964
No 33
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=2.1e-32 Score=244.14 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=149.7
Q ss_pred eeeCcEEEEeeecccccCC-CCCcceEEeeCCCCCC------hHHHHhhccC--CCcEEeccCCC--C--cceEEEcCCC
Q 040428 64 VTVPNFILLCGSEFVLQGL-ANGVVGIAGLGRSKVA------LPSQLVAFSL--KRKFALYLSPF--G--NGVIIFSDGP 130 (311)
Q Consensus 64 ~~v~~~~FGc~~~~~~~~~-~~~~~GIlGLg~~~~S------l~~ql~~~gl--~~~FS~cL~~~--~--~G~l~fG~~d 130 (311)
++++++.|||++.+.+..+ ....+||||||++.+| +..+|.++|+ .++||+||.+. . .|.|+||++|
T Consensus 3 ~~v~~~~Fg~~~~~~~~~f~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 3 VKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEEEECCSSTTTSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred eEECCeEEEEEEEccCCccccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 5788999999998742222 2468999999998755 4567876664 79999999876 2 8999999999
Q ss_pred CCCCCcceeeee-ecCCCCCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhh
Q 040428 131 YDLNFDVSNTAS-GFLGEPSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANA 209 (311)
Q Consensus 131 ~~~~~~~s~~lt-~~~~~~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~ 209 (311)
.. ++.++|+ +.. ....+|.|.|++|+|+++.+... ....+|||||||+++||+++|++|.+++.+.
T Consensus 83 ~~---~~~g~l~~~p~-~~~~~~~v~l~~i~v~~~~~~~~---------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~ 149 (241)
T 1lya_B 83 SK---YYKGSLSYLNV-TRKAYWQVHLDQVEVASGLTLCK---------EGCEAIVDTGTSLMVGPVDEVRELQKAIGAV 149 (241)
T ss_dssp GG---GEEEEEEEEEC-SSBTTBEEEEEEEEETTSCEEST---------TCEEEEECTTCSSEEECHHHHHHHHHHHTCE
T ss_pred HH---HcCCceEEEEC-ccccEEEEEEeEEEECCeeEecc---------CCCEEEEECCCccccCCHHHHHHHHHHhCCe
Confidence 75 6677773 111 34679999999999999865311 1347999999999999999999999998643
Q ss_pred CCCccccCCCCCCcceeeecCCCccccCCCCCeEEEEEcCCceEEE----ee--c---CC-----CC-------CCccee
Q 040428 210 MPKVTRVSPVAPSRACFRLQDIGFTRIRPFVPQIDLVLQNKNVVWR----FV--D---GG-----VN-------PQTSIV 268 (311)
Q Consensus 210 ~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~----~~--~---~G-----~~-------~~~~~I 268 (311)
.. ..+ .....|+.. ..+|+|+|+|+|.++.++ ++ . .+ +. ..+.||
T Consensus 150 ~~----~~g-~~~~~C~~~---------~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~i 215 (241)
T 1lya_B 150 PL----IQG-EYMIPCEKV---------STLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWI 215 (241)
T ss_dssp EE----ETT-EEEEEGGGG---------GGSCCEEEEETTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEE
T ss_pred ec----cCC-cEEEECCCC---------ccCCeEEEEECCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEE
Confidence 21 111 123467653 358999999965333333 11 1 11 11 135799
Q ss_pred eccceeeceEEEEECCCCEEEEEec
Q 040428 269 IGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 269 LG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
||+.|||++|+|||++++|||||++
T Consensus 216 lG~~fl~~~y~vfD~~~~~igfA~~ 240 (241)
T 1lya_B 216 LGDVFIGRYYTVFDRDNNRVGFAEA 240 (241)
T ss_dssp ECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred echHHhcceEEEEECCCCEEEEEEc
Confidence 9999999999999999999999953
No 34
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=1.5e-32 Score=266.31 Aligned_cols=238 Identities=13% Similarity=0.166 Sum_probs=175.2
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeec----ccccCC
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSE----FVLQGL 82 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~----~~~~~~ 82 (311)
...+.|..|+++.. ..|.+...|. +|+ ++|.+++|+|+|++ ..++ +.|||++. +.+ ..
T Consensus 178 ~~~ydps~SsT~~~-----~~~~f~i~Yg-dGs-~~G~~~~Dtv~igg---------~~v~-~~Fg~a~~t~~~~~~-f~ 239 (451)
T 3qvc_A 178 KNHYDSSKSKTYEK-----DDTPVKLTSK-AGT-ISGIFSKDLVTIGK---------LSVP-YKFIEMTEIVGFEPF-YS 239 (451)
T ss_dssp SCCBCGGGCTTCEE-----EEEEEEEECS-SEE-EEEEEEEEEEEETT---------EEEE-EEEEEEEEEEECTTH-HH
T ss_pred CCCCCCCCCccccc-----CCCEEEEEEC-CCE-EEEEEEEEEEEECC---------EEEE-EEEEEEEeccccCCC-cc
Confidence 35677888887764 3466666653 554 99999999999986 3788 99999998 522 11
Q ss_pred CCCcceEEeeCCCCC------ChHHHHhhccC--CCcEEeccCCC--CcceEEEcCCCCCCCCcceeeee-ecCCCCCcc
Q 040428 83 ANGVVGIAGLGRSKV------ALPSQLVAFSL--KRKFALYLSPF--GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVE 151 (311)
Q Consensus 83 ~~~~~GIlGLg~~~~------Sl~~ql~~~gl--~~~FS~cL~~~--~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~ 151 (311)
....+||||||++.+ +++.+|.++|+ .++||+||.+. ..|.|+||++|.. ++.++|+ ... ....+
T Consensus 240 ~~~~dGILGLg~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s---~y~G~l~~~pv-~~~~~ 315 (451)
T 3qvc_A 240 ESDVDGVFGLGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEER---FFDGPLNYEKL-NHDLM 315 (451)
T ss_dssp HSCCCEEEECSSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGG---GEEEEEEEEEC-SSTTS
T ss_pred CCCCCEEEecCCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchh---hcCCceEEEEc-ccCCe
Confidence 235799999999764 46778887765 68999999976 5899999999975 6677773 111 35689
Q ss_pred eEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCCCccccCCCCCCcceeeecCC
Q 040428 152 YFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMPKVTRVSPVAPSRACFRLQDI 231 (311)
Q Consensus 152 Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~ 231 (311)
|.|.|+ |+|+++ .. ....+||||||++++||+++|++|.+++.+... . ........|. .
T Consensus 316 w~v~l~-I~Vgg~-~~-----------~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~---~-~~g~y~v~C~-~--- 374 (451)
T 3qvc_A 316 WQVDLD-VHFGNV-SS-----------KKANVILDSATSVITVPTEFFNQFVESASVFKV---P-FLSLYVTTCG-N--- 374 (451)
T ss_dssp SEEEEE-EEETTE-EE-----------EEEEEEECTTBSSEEECHHHHHHHHTTTTCEEC---T-TSSCEEEETT-C---
T ss_pred eEEEEE-EEECCc-cC-----------CCceEEEeCCCccccCCHHHHHHHHHHcCCeec---C-CCCeEEeeCC-c---
Confidence 999999 999998 11 124799999999999999999999988754321 0 0111223565 1
Q ss_pred CccccCCCCCeEEEEEcCCceEEE----eec----C-C-----CC--C--CcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 232 GFTRIRPFVPQIDLVLQNKNVVWR----FVD----G-G-----VN--P--QTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 232 ~~~~~~~~~P~i~~~f~g~~~~l~----~~~----~-G-----~~--~--~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
..+|+|+|+|+|..+.++ ++. + + +. . .+.||||+.|||++|+|||++++|||||++
T Consensus 375 ------~~~P~itf~fgg~~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~a 448 (451)
T 3qvc_A 375 ------TKLPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALA 448 (451)
T ss_dssp ------TTCCCEEEEETTEEEEECHHHHEEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred ------CcCCcEEEEECCEEEEEcHHHheeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEc
Confidence 368999999987444444 221 1 1 11 1 457999999999999999999999999964
No 35
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.93 E-value=1.2e-25 Score=200.42 Aligned_cols=173 Identities=13% Similarity=0.121 Sum_probs=131.3
Q ss_pred CCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeecCCCCCCCcceeeCcEEEEeeecccccCC-CCCc
Q 040428 8 QPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQSTNGHNPGRAVTVPNFILLCGSEFVLQGL-ANGV 86 (311)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~~~g~~~~~~~~v~~~~FGc~~~~~~~~~-~~~~ 86 (311)
..|.|..|++++.. .|.+...|. +| +++|.+++|+|+|++ ..++++.|||++.+.+..+ ....
T Consensus 56 ~~y~~~~SsT~~~~-----~~~~~i~Yg-~G-s~~G~~~~D~v~~g~---------~~v~~~~fg~~~~~~~~~f~~~~~ 119 (239)
T 1b5f_A 56 SMYESSDSSTYKEN-----GTFGAIIYG-TG-SITGFFSQDSVTIGD---------LVVKEQDFIEATDEADNVFLHRLF 119 (239)
T ss_dssp CCBCGGGCTTCEEE-----EEEEEEECS-SC-EEEEEEEEEEEEETT---------EEEEEEEEEEEEEECHHHHTTCSC
T ss_pred CCCCCccCCCeeeC-----CcEEEEEEC-CC-cEEEEEEEEEEEECC---------cEEccEEEEEEEeccCccccccCc
Confidence 46788888887653 355555542 55 489999999999986 3788999999998632111 3467
Q ss_pred ceEEeeCCCCCChH--HHHhhccC--CCcEEeccCCC----CcceEEEcCCCCCCCCcceeeee-ecCCCCCcceEEEEE
Q 040428 87 VGIAGLGRSKVALP--SQLVAFSL--KRKFALYLSPF----GNGVIIFSDGPYDLNFDVSNTAS-GFLGEPSVEYFIGVA 157 (311)
Q Consensus 87 ~GIlGLg~~~~Sl~--~ql~~~gl--~~~FS~cL~~~----~~G~l~fG~~d~~~~~~~s~~lt-~~~~~~~~~Y~V~l~ 157 (311)
+||||||+..+|.+ .+|.++++ .++||+||++. ..|.|+||++|.. ++.++++ ... ....+|.|.|+
T Consensus 120 ~GilGLg~~~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~---~~~g~l~~~p~-~~~~~~~v~l~ 195 (239)
T 1b5f_A 120 DGILGLSFQTISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPN---HFRGDHTYVPV-TYQYYWQFGIG 195 (239)
T ss_dssp CEEEECSCCSSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGG---GEEEEEEEEEE-EEETTEEEEEC
T ss_pred ceEEecCccccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChh---hccCceEEEEc-ccCCeEEEEee
Confidence 99999999998854 45656664 68999999873 5899999999975 5666662 110 23569999999
Q ss_pred EEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHh
Q 040428 158 SVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFAN 208 (311)
Q Consensus 158 gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~ 208 (311)
+|+|+++.+.+... ..++||||||++++||+++|++|.+++.+
T Consensus 196 ~i~v~~~~~~~~~~--------~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 196 DVLIGDKSTGFCAP--------GCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp CEEETTEECCTTTT--------CEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred EEEECCEEecccCC--------CCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 99999998764321 35799999999999999999999998754
No 36
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=98.98 E-value=4.8e-10 Score=83.69 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCCeEEEEEcCCceEEE----ee--c-C-------CCC------CCcceeeccceeeceEEEEECCCCEEEEEec
Q 040428 239 FVPQIDLVLQNKNVVWR----FV--D-G-------GVN------PQTSIVIGGCQLENNLLQFDLATSRLDFSNS 293 (311)
Q Consensus 239 ~~P~i~~~f~g~~~~l~----~~--~-~-------G~~------~~~~~ILG~~~~r~~~vvfDl~~~riGFa~~ 293 (311)
.+|+|+|+|+|..+.++ ++ . . ++. ..+.||||++|||++|+|||++++|||||++
T Consensus 12 ~~P~i~f~~gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA~~ 86 (87)
T 1b5f_B 12 SMPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMDATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEA 86 (87)
T ss_dssp GCCCEEEEETTEEEEECHHHHEEEESCTTTCEEEESEEECCCBSSSBEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cCCcEEEEECCEEEEECHHHhEEEccCCCCCEEEEEEEECCCCCCCCeEEechHHhccEEEEEECCCCEEEEEEc
Confidence 58999999976433443 11 1 1 111 1357999999999999999999999999953
No 37
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=94.61 E-value=0.03 Score=41.92 Aligned_cols=41 Identities=12% Similarity=0.056 Sum_probs=32.2
Q ss_pred CCCCCCCCCCceeecCCCCCCcccceeeecCCceEEEEEEEEEEEeec
Q 040428 7 KQPIAAQHSPILLMLKPAEVAYVALARRTISNTGTFGDIHIDVLSIQS 54 (311)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~gs~~~G~l~~D~v~~~~ 54 (311)
...|.|..|++++.. .|.+...|. +|+ ++|.+++|+|+|++
T Consensus 56 ~~~y~p~~SsT~~~~-----~~~~~i~Yg-~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 56 HHKYNSDKSSTYVKN-----GTSFDIHYG-SGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp SCCBCGGGCTTCEEE-----EEEEEEECS-SCE-EEEEEEEEEEEESC
T ss_pred CCCCCchhCCCceeC-----CCcEEEEEC-CcE-EEEEEEEEEEEECC
Confidence 356889999998764 477777663 555 89999999999975
No 38
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=90.71 E-value=0.6 Score=37.09 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=60.7
Q ss_pred CcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCC-Ccc-ccCCCCCCccee
Q 040428 149 SVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMP-KVT-RVSPVAPSRACF 226 (311)
Q Consensus 149 ~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~-~~~-~~~~~~~~~~C~ 226 (311)
..+++|. +.|+|+.+ .++||||.+.+.++.+..+.+.- ..... ... .+.+... ..+.
T Consensus 24 ~~~~~v~---v~InG~~~---------------~~LvDTGAs~s~is~~~a~~lgl--~~~~~~~~~~~a~g~g~-~~~~ 82 (148)
T 2i1a_A 24 VPMLYIN---IEINNYPV---------------KAFVDTGAQTTIMSTRLAKKTGL--SRMIDKRFIGEARGVGT-GKII 82 (148)
T ss_dssp CCCCEEE---EEETTEEE---------------EEEECTTCSSCEEEHHHHHHHTG--GGGCBCCCC------------C
T ss_pred cceEEEE---EEECCEEE---------------EEEEECCCCccccCHHHHHHcCC--CccCCcceEEEEecCCC-cccc
Confidence 3455555 67888854 38999999999999888765421 11111 000 0001000 0010
Q ss_pred eecCCCccccCCCCCeEEEEEcCCceEEE--eecCCCCCCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 227 RLQDIGFTRIRPFVPQIDLVLQNKNVVWR--FVDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 227 ~~~~~~~~~~~~~~P~i~~~f~g~~~~l~--~~~~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
.......+.+++-..... .++. ....|||.-||+.+.+..|.++++|-|.
T Consensus 83 -----------~~~~~~~i~ig~~~~~~~~~vl~~----~~d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 83 -----------GRIHQAQVKIETQYIPCSFTVLDT----DIDVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp -----------EEEEEEEEEETTEEEEEEEEEECS----SCSEEECHHHHHHTTCEEETTTTEEEET
T ss_pred -----------cEEEEEEEEECCEEeceeEEEecC----CCCeEecHHHHhhCCEEEECCCCEEEEc
Confidence 012233555544211122 2342 2247999999999999999999999996
No 39
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=77.50 E-value=2.3 Score=34.04 Aligned_cols=109 Identities=12% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHHHHHHHHHHHhhCC-Ccc-ccCCCCCCcce
Q 040428 148 PSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSIYKAFVQAFANAMP-KVT-RVSPVAPSRAC 225 (311)
Q Consensus 148 ~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~y~~l~~~~~~~~~-~~~-~~~~~~~~~~C 225 (311)
....|+|.. .|+++.+ .++||||.+.+.++.+..+.+- +..... ... .+.+. ....+
T Consensus 21 ~~~~l~v~~---~Ing~~v---------------~~LVDTGAs~s~Is~~~A~rlG--L~~~~~~~~~~~a~g~-G~~~~ 79 (148)
T 3s8i_A 21 QVTMLYINC---KVNGHPL---------------KAFVDSGAQMTIMSQACAERCN--IMRLVDRRWAGVAKGV-GTQRI 79 (148)
T ss_dssp -CCCCEEEE---EETTEEE---------------EEEECTTCSSCEEEHHHHHHTT--CGGGEEGGGCEECCC----CEE
T ss_pred ccCEEEEEE---EECCEEE---------------EEEEeCCCCcEeeCHHHHHHcC--CccccCcceeEEEEcC-CccEE
Confidence 345666664 4788865 3899999999999999888652 111000 000 00010 00011
Q ss_pred eeecCCCccccCCCCCeEEEEEcCCceEEE--eecCCCCCCcceeeccceeeceEEEEECCCCEEEEE
Q 040428 226 FRLQDIGFTRIRPFVPQIDLVLQNKNVVWR--FVDGGVNPQTSIVIGGCQLENNLLQFDLATSRLDFS 291 (311)
Q Consensus 226 ~~~~~~~~~~~~~~~P~i~~~f~g~~~~l~--~~~~G~~~~~~~ILG~~~~r~~~vvfDl~~~riGFa 291 (311)
. -.++...+.+++-.+... .++.. .-..|||.-+|+.+..+-|+++++|-|.
T Consensus 80 ~-----------g~v~~~~I~Ig~~~~~~~~~Vle~~---~~d~LLGmD~L~~~~~~ID~~~~~L~l~ 133 (148)
T 3s8i_A 80 I-----------GRVHLAQIQIEGDFLQCSFSILEDQ---PMDMLLGLDMLRRHQCSIDLKKNVLVIG 133 (148)
T ss_dssp E-----------EEEEEEEEEETTEEEEEEEEEETTC---SSSEEECHHHHHHTTCEEETTTTEEECT
T ss_pred E-----------EEEEEEEEEECCEEEEEEEEEeCCC---CcCeeccHHHHHhCCEEEEcCCCEEEEc
Confidence 1 123455677765311111 23321 1246999999999999999999999987
No 40
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=23.77 E-value=64 Score=25.05 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=20.9
Q ss_pred EEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHH
Q 040428 157 ASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETS 197 (311)
Q Consensus 157 ~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~ 197 (311)
..+.|+|+.+ .++||||...|.|.+.
T Consensus 25 v~i~I~G~~~---------------~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 25 ITLKVGGQPV---------------TFLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEEETTEEE---------------EEEECTTCSSCEECSC
T ss_pred EEEEECCEEE---------------EEEEeCCCCeEEEccc
Confidence 3478888864 3899999999999864
No 41
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=22.26 E-value=74 Score=28.01 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=23.9
Q ss_pred CCcceEEEEEEEEEcceEeecCcccccccCCCCCcEEEecCCcccccCHHH
Q 040428 148 PSVEYFIGVASVNVNGKAVPLNKTLLSIDNEGVDGAKINTVNPYTVLETSI 198 (311)
Q Consensus 148 ~~~~Y~V~l~gIsvg~~~l~~~~~~~~~~~~g~~~~iiDSGTt~t~lp~~~ 198 (311)
....|++. |+||.+.+ .+++|||++.+++|..-
T Consensus 12 ~~~~Y~~~---i~iG~Q~~---------------~v~~DTGSs~lWv~~~~ 44 (325)
T 1ibq_A 12 NDEEYLTP---VTVGKSTL---------------HLDFDTGSADLWVFSDE 44 (325)
T ss_dssp TTSCEEEE---EEEBTEEE---------------EEEEETTCCCEEEECTT
T ss_pred CCCEEEEE---EEECCEEE---------------EEEEeCCCccceEeeCC
Confidence 34566654 77884443 38999999999998753
Done!