BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040429
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1SS4|A Chain A, Crystal Structure Of The Glyoxalase Family Protein
           Apc24694 From Bacillus Cereus
 pdb|1SS4|B Chain B, Crystal Structure Of The Glyoxalase Family Protein
           Apc24694 From Bacillus Cereus
          Length = 153

 Score = 37.0 bits (84), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)

Query: 118 LSFTVTDINSAVTKLMALGAELDGS-IKYEIHGKVAAMRCIDGHMLGLYE 166
           + FTV DI+  V++L   GAEL G  ++YE   ++  +R ++G ++GL E
Sbjct: 99  VXFTVEDIDEXVSRLTKHGAELVGEVVQYENSYRLCYIRGVEGILIGLAE 148


>pdb|3RPL|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
           Complex With Fructose-1,6- Bisphosphate
          Length = 379

 Score = 30.4 bits (67), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 119 SFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLG--LYEP 167
           +F+ T+I++    LM +GA  +G I        AAMRC+ GH  G  +Y+P
Sbjct: 242 AFSGTNIHA----LMGIGAAPEGVIS------AAAMRCLGGHFQGQLIYDP 282


>pdb|3ROJ|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
 pdb|3ROJ|B Chain B, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
 pdb|3ROJ|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
 pdb|3ROJ|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803
          Length = 379

 Score = 30.4 bits (67), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 119 SFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLG--LYEP 167
           +F+ T+I++    LM +GA  +G I        AAMRC+ GH  G  +Y+P
Sbjct: 242 AFSGTNIHA----LMGIGAAPEGVIS------AAAMRCLGGHFQGQLIYDP 282


>pdb|3RPL|A Chain A, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
           Complex With Fructose-1,6- Bisphosphate
 pdb|3RPL|C Chain C, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
           Complex With Fructose-1,6- Bisphosphate
 pdb|3RPL|D Chain D, D-Fructose 1,6-Bisphosphatase Class 2SEDOHEPTULOSE
           1,7-Bisphosphatase Of Synechocystis Sp. Pcc 6803 In
           Complex With Fructose-1,6- Bisphosphate
          Length = 379

 Score = 30.4 bits (67), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 12/51 (23%)

Query: 119 SFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLG--LYEP 167
           +F+ T+I++    LM +GA  +G I        AAMRC+ GH  G  +Y+P
Sbjct: 242 AFSGTNIHA----LMGIGAAPEGVIS------AAAMRCLGGHFQGQLIYDP 282


>pdb|3DEW|A Chain A, The Structure Of A Putative Tetr Family Transcriptional
           Regulator From Geobacter Sulfurreducens Pca
          Length = 206

 Score = 27.7 bits (60), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 55  ASFRWILQLHKDVPKAARFYSEGL 78
           A  RW +Q H++ P+  RFY+  L
Sbjct: 86  AYLRWTIQRHRNNPQLLRFYTSEL 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,145,629
Number of Sequences: 62578
Number of extensions: 125108
Number of successful extensions: 260
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 5
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)