BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040429
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4IK90|HUTH_GEOTN Histidine ammonia-lyase OS=Geobacillus thermodenitrificans (strain
NG80-2) GN=hutH PE=3 SV=1
Length = 504
Score = 33.5 bits (75), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 19 LHSLSGSLVKS--SARLSKVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSE 76
+H G L ++ + RL + ++ R+ ERRV A S R I Q+H +A R+ E
Sbjct: 239 IHEARGFLEQAEVAERLRRYLDGSQLITRQGERRVQDAYSIRCIPQVHGASLRALRYVKE 298
Query: 77 GLDFTVNVCT 86
L+ +N T
Sbjct: 299 TLEIEMNAAT 308
>sp|Q5L310|HUTH_GEOKA Histidine ammonia-lyase OS=Geobacillus kaustophilus (strain HTA426)
GN=hutH PE=3 SV=1
Length = 504
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 27 VKSSARLSKVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT 86
V+ + RL + ++ R+ ERRV A S R + Q+H +A R+ E L+ +N T
Sbjct: 249 VEVAERLRRYLAGSQLTTRQGERRVQDAYSIRCLPQVHGASLRALRYVKETLEIEMNAAT 308
>sp|A4YKA5|DAPF_BRASO Diaminopimelate epimerase OS=Bradyrhizobium sp. (strain ORS278)
GN=dapF PE=1 SV=1
Length = 289
Score = 33.1 bits (74), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQ 111
M F W +D+P A F R+ ELQ GP+ ++ SPS VV
Sbjct: 120 MGVPRFGW-----QDIPLAEEFRD-----------TRYIELQIGPIDAPILHSPS--VVS 161
Query: 112 NGNSSLLSFTVTDINS 127
GN + + D+NS
Sbjct: 162 MGNPHAVFWVDNDVNS 177
>sp|P20273|CD22_HUMAN B-cell receptor CD22 OS=Homo sapiens GN=CD22 PE=1 SV=2
Length = 847
Score = 32.7 bits (73), Expect = 1.2, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 13/117 (11%)
Query: 9 WAPREVRIRVLHSL----SGSLVKSSARLSKVHKRDEVRERERERRVMAAASFRWILQLH 64
+APR+VR+R + L SG+ V S H ++ E+ R++ S QL+
Sbjct: 503 YAPRDVRVRKIKPLSEIHSGNSVSLQCDFSSSHPKEVQFFWEKNGRLLGKES-----QLN 557
Query: 65 KD--VPKAARFYSEGLDFTV-NVCTLRWA-ELQSGPLKLALMQSPSDHVVQNGNSSL 117
D P+ A YS ++ ++ + W E+ P +L + SP D V++ +++L
Sbjct: 558 FDSISPEDAGSYSCWVNNSIGQTASKAWTLEVLYAPRRLRVSMSPGDQVMEGKSATL 614
>sp|Q1QHJ3|DAPF_NITHX Diaminopimelate epimerase OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=dapF PE=1 SV=1
Length = 290
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQ 111
M F W +D+P A F R+ ELQ GP+ ++ SPS VV
Sbjct: 122 MGPPKFGW-----RDIPLAEEFRDT-----------RYIELQVGPIDAPVLHSPS--VVS 163
Query: 112 NGNSSLLSFTVTDINS 127
GN + F V D+N+
Sbjct: 164 MGNPHAI-FWVDDVNA 178
>sp|P0CE70|NFT1_YEASX ABC transporter NFT1 OS=Saccharomyces cerevisiae GN=NFT1 PE=2 SV=1
Length = 1558
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 RRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR 88
R + A+ SFRW+L +D+ A FYS FT+++ LR
Sbjct: 153 RLISASQSFRWVLACKRDL-WAVSFYSYASLFTLSILPLR 191
>sp|P0CE68|NFT1_YEAST ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NFT1 PE=2 SV=1
Length = 1218
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 RRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR 88
R + A+ SFRW+L +D+ A FYS FT+++ LR
Sbjct: 153 RLISASQSFRWVLACKRDL-WAVSFYSYASLFTLSILPLR 191
>sp|C8ZCR2|NFT1_YEAS8 ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain Lalvin
EC1118 / Prise de mousse) GN=NFT1 PE=3 SV=1
Length = 1558
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 RRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR 88
R + A+ SFRW+L +D+ A FYS FT+++ LR
Sbjct: 153 RLISASQSFRWVLACKRDL-WAVSFYSYASLFTLSILPLR 191
>sp|A7A063|NFT1_YEAS7 ABC transporter NFT1 OS=Saccharomyces cerevisiae (strain YJM789)
GN=NFT1 PE=3 SV=1
Length = 1558
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 49 RRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR 88
R + A+ SFRW+L +D+ A FYS FT+++ LR
Sbjct: 153 RLISASQSFRWVLACKRDL-WAVSFYSYASLFTLSILPLR 191
>sp|B1XLK5|FBSB_SYNP2 D-fructose 1,6-bisphosphatase class 2/sedoheptulose
1,7-bisphosphatase OS=Synechococcus sp. (strain ATCC
27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1301 PE=3 SV=1
Length = 345
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 12/52 (23%)
Query: 119 SFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLG--LYEPA 168
+F T+I++ LM +GA +G I AAMRC+ GH G +Y+PA
Sbjct: 208 AFAGTNIHA----LMGIGAAPEGVIS------AAAMRCLGGHFQGQLIYDPA 249
>sp|A5E915|DAPF_BRASB Diaminopimelate epimerase OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=dapF PE=1 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 18/76 (23%)
Query: 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQ 111
M F W +++P A F R+ ELQ GP+ ++ SPS VV
Sbjct: 120 MGVPKFGW-----QEIPLAEEFRD-----------TRYIELQIGPIDAPILHSPS--VVN 161
Query: 112 NGNSSLLSFTVTDINS 127
GN + + D+NS
Sbjct: 162 MGNPHAVFWVDGDVNS 177
>sp|Q3AE81|ADEC2_CARHZ Adenine deaminase 2 OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=ade2 PE=3 SV=1
Length = 570
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 97 LKLALMQSPSDHVVQNG---NSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAA 153
+++AL + P+D V++N NS F D+ + V +A E +G Y++ G
Sbjct: 8 VEVALGKKPADLVLKNAQVFNSFTGEFVTGDV-AVVAGYIAGTGEYEGKTTYDLQGAYVT 66
Query: 154 MRCIDGHM 161
IDGH+
Sbjct: 67 PGFIDGHV 74
>sp|A4QFM2|MURC_CORGB UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium
glutamicum (strain R) GN=murC PE=3 SV=1
Length = 486
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 61 LQLHKDVPKAA-----RFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNS 115
+Q H +VP A + +EG T+N+ G ++Q P DH+V NG +
Sbjct: 258 VQAHPEVPAMATIVDSQVVAEGTRATINI---------DGQEVSVILQIPGDHMVLNGAA 308
Query: 116 SLLSFTVTDINSAVTKLMALGAELDGS-IKYEIHGKV 151
+LL+ + + V KL+ ++ G ++E HG +
Sbjct: 309 ALLAGYL--VGGDVDKLVEGLSDFSGVRRRFEFHGAI 343
>sp|P94335|MURC_CORGL UDP-N-acetylmuramate--L-alanine ligase OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=murC PE=3 SV=5
Length = 486
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 61 LQLHKDVPKAA-----RFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNS 115
+Q H +VP A + +EG T+N+ G ++Q P DH+V NG +
Sbjct: 258 VQAHPEVPAMATIVDSQVVAEGTRATINI---------DGQEVSVILQIPGDHMVLNGAA 308
Query: 116 SLLSFTVTDINSAVTKLMALGAELDGS-IKYEIHGKV 151
+LL+ + + V KL+ ++ G ++E HG +
Sbjct: 309 ALLAGYL--VGGDVDKLVEGLSDFSGVRRRFEFHGAI 343
>sp|Q9SXY0|FAS1_ARATH Chromatin assembly factor 1 subunit FAS1 OS=Arabidopsis thaliana
GN=FAS1 PE=1 SV=1
Length = 815
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 35 KVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS 94
++ K+ + E+E++RR A + LQ+ K RF + D ++ L +E+ +
Sbjct: 304 RIKKQQDESEKEQKRREKEQAELKKQLQVQKQASIMERFLKKSKDSSLTQPKLPSSEVTA 363
Query: 95 GPLKLALMQSPSDHVVQ---NGNSSLLSFTVTDI 125
L ++ VVQ N S+ TV DI
Sbjct: 364 QELSCTKHENEIGKVVQAIDNAFSTTCEATVDDI 397
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,825,401
Number of Sequences: 539616
Number of extensions: 1872240
Number of successful extensions: 5873
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5869
Number of HSP's gapped (non-prelim): 21
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)