Query 040429
Match_columns 168
No_of_seqs 172 out of 1278
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:20:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040429.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040429hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07247 SgaA_N_like N-terminal 99.9 2E-20 4.3E-25 127.9 15.3 109 57-166 1-114 (114)
2 cd08342 HPPD_N_like N-terminal 99.8 1.1E-19 2.5E-24 128.7 16.3 111 57-167 1-123 (136)
3 cd09011 Glo_EDI_BRP_like_23 Th 99.8 7.9E-20 1.7E-24 126.4 13.8 111 56-167 2-119 (120)
4 PRK11478 putative lyase; Provi 99.8 2.1E-19 4.5E-24 125.4 14.8 114 53-166 3-128 (129)
5 cd07264 Glo_EDI_BRP_like_15 Th 99.8 3.6E-19 7.8E-24 123.3 15.2 111 57-167 1-125 (125)
6 cd07243 2_3_CTD_C C-terminal d 99.8 1.7E-19 3.7E-24 129.1 13.9 109 52-166 2-124 (143)
7 PRK04101 fosfomycin resistance 99.8 4.8E-19 1E-23 125.9 15.3 113 55-167 3-119 (139)
8 cd08363 FosB FosB, a fosfomyci 99.8 4.7E-19 1E-23 124.9 13.8 111 57-167 1-115 (131)
9 cd07255 Glo_EDI_BRP_like_12 Th 99.8 1.3E-18 2.8E-23 120.6 15.8 112 55-167 1-119 (125)
10 cd08359 Glo_EDI_BRP_like_22 Th 99.8 8.9E-19 1.9E-23 120.5 14.8 108 59-166 4-119 (119)
11 cd08349 BLMA_like Bleomycin bi 99.8 1.1E-18 2.5E-23 118.3 14.6 106 61-166 3-112 (112)
12 cd08350 BLMT_like BLMT, a bleo 99.8 1.1E-18 2.3E-23 120.8 14.1 106 60-168 6-120 (120)
13 cd08351 ChaP_like ChaP, an enz 99.8 1.3E-18 2.7E-23 121.0 14.4 108 55-167 3-121 (123)
14 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 1.7E-18 3.6E-23 119.3 14.6 112 55-166 2-124 (125)
15 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.4E-18 3.1E-23 118.5 13.9 108 59-166 1-119 (119)
16 cd08364 FosX FosX, a fosfomyci 99.8 1.9E-18 4E-23 121.7 14.7 110 55-167 3-122 (131)
17 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 7.8E-19 1.7E-23 118.5 12.2 108 57-164 1-114 (114)
18 cd08353 Glo_EDI_BRP_like_7 Thi 99.8 1.6E-18 3.5E-23 123.0 14.1 112 55-167 2-141 (142)
19 cd07265 2_3_CTD_N N-terminal d 99.8 2E-18 4.4E-23 119.5 14.1 107 55-167 3-119 (122)
20 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 1.5E-18 3.3E-23 119.8 13.1 110 56-165 1-125 (125)
21 cd08347 PcpA_C_like C-terminal 99.8 3.8E-18 8.3E-23 124.0 15.5 111 56-167 1-120 (157)
22 cd09013 BphC-JF8_N_like N-term 99.8 3.2E-18 6.9E-23 118.5 14.2 110 52-167 2-118 (121)
23 cd08356 Glo_EDI_BRP_like_17 Th 99.8 1.8E-18 3.8E-23 118.9 12.7 103 60-166 5-113 (113)
24 PLN02367 lactoylglutathione ly 99.8 8.5E-18 1.9E-22 128.2 17.6 118 50-167 69-222 (233)
25 cd07238 Glo_EDI_BRP_like_5 Thi 99.8 4.3E-18 9.3E-23 116.1 14.6 105 60-168 4-112 (112)
26 cd08361 PpCmtC_N N-terminal do 99.8 3.7E-18 8.1E-23 119.0 14.5 106 55-167 5-119 (124)
27 cd07244 FosA FosA, a Fosfomyci 99.8 3.1E-18 6.7E-23 118.7 13.7 108 56-167 1-110 (121)
28 cd07235 MRD Mitomycin C resist 99.8 3.2E-18 6.8E-23 118.4 13.7 108 57-165 1-121 (122)
29 PF12681 Glyoxalase_2: Glyoxal 99.8 5.9E-18 1.3E-22 114.3 14.6 103 62-165 1-108 (108)
30 cd07261 Glo_EDI_BRP_like_11 Th 99.8 3.9E-18 8.4E-23 116.6 13.7 107 60-166 2-114 (114)
31 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 7.1E-18 1.5E-22 116.2 15.1 112 55-166 2-125 (125)
32 cd08357 Glo_EDI_BRP_like_18 Th 99.8 2.9E-18 6.4E-23 118.6 13.1 108 59-166 2-124 (125)
33 cd08355 Glo_EDI_BRP_like_14 Th 99.8 1.1E-17 2.5E-22 115.7 16.1 108 59-166 2-121 (122)
34 TIGR03211 catechol_2_3 catecho 99.8 4E-18 8.7E-23 135.6 15.6 149 10-166 99-264 (303)
35 cd08345 Fosfomycin_RP Fosfomyc 99.8 3.1E-18 6.8E-23 116.7 12.8 108 59-167 1-111 (113)
36 cd07233 Glyoxalase_I Glyoxalas 99.8 6.2E-18 1.3E-22 116.3 14.4 109 57-165 1-121 (121)
37 cd07246 Glo_EDI_BRP_like_8 Thi 99.8 1.1E-17 2.3E-22 115.2 15.4 108 60-167 5-122 (122)
38 TIGR03213 23dbph12diox 2,3-dih 99.8 5.8E-18 1.3E-22 133.8 15.7 144 16-166 103-262 (286)
39 cd07240 ED_TypeI_classII_N N-t 99.8 7.3E-18 1.6E-22 115.3 14.0 107 55-167 1-114 (117)
40 TIGR03645 glyox_marine lactoyl 99.8 6.1E-18 1.3E-22 123.5 14.4 113 55-167 3-151 (162)
41 cd07242 Glo_EDI_BRP_like_6 Thi 99.8 1.3E-17 2.8E-22 116.1 15.2 111 56-167 1-128 (128)
42 TIGR03081 metmalonyl_epim meth 99.8 3.9E-18 8.4E-23 118.4 12.5 111 56-166 1-128 (128)
43 cd07266 HPCD_N_class_II N-term 99.8 5.2E-18 1.1E-22 117.1 13.0 107 55-167 3-118 (121)
44 cd08354 Glo_EDI_BRP_like_13 Th 99.8 9.4E-18 2E-22 115.6 14.1 111 57-167 1-122 (122)
45 cd08360 MhqB_like_C C-terminal 99.8 1.3E-17 2.9E-22 117.7 14.9 109 55-167 2-120 (134)
46 cd08348 BphC2-C3-RGP6_C_like T 99.8 2E-17 4.3E-22 116.2 15.5 111 56-167 1-120 (134)
47 cd07267 THT_Oxygenase_N N-term 99.8 1.2E-17 2.6E-22 114.5 14.0 106 55-166 2-109 (113)
48 cd07239 BphC5-RK37_C_like C-te 99.8 1.5E-17 3.2E-22 119.2 14.4 107 55-167 3-117 (144)
49 cd07252 BphC1-RGP6_N_like N-te 99.8 1.5E-17 3.3E-22 115.1 13.9 105 56-166 2-116 (120)
50 TIGR00068 glyox_I lactoylgluta 99.8 3E-17 6.5E-22 118.1 15.3 113 55-167 16-141 (150)
51 cd07257 THT_oxygenase_C The C- 99.8 4.4E-18 9.5E-23 123.0 10.8 106 56-167 1-125 (153)
52 cd09012 Glo_EDI_BRP_like_24 Th 99.8 1.2E-17 2.7E-22 116.0 12.6 108 58-166 2-123 (124)
53 cd07262 Glo_EDI_BRP_like_19 Th 99.8 2.4E-17 5.3E-22 114.1 14.0 109 57-165 1-122 (123)
54 cd07254 Glo_EDI_BRP_like_20 Th 99.8 4.6E-17 1E-21 112.3 14.7 107 58-167 3-117 (120)
55 cd08362 BphC5-RrK37_N_like N-t 99.8 2.3E-17 5E-22 113.5 13.1 107 55-167 2-117 (120)
56 PF00903 Glyoxalase: Glyoxalas 99.8 3.5E-18 7.6E-23 117.9 9.0 109 56-164 1-128 (128)
57 PLN03042 Lactoylglutathione ly 99.8 6.9E-17 1.5E-21 120.2 16.2 113 55-167 26-174 (185)
58 cd09014 BphC-JF8_C_like C-term 99.8 3.6E-17 7.8E-22 119.8 13.7 113 52-167 2-127 (166)
59 cd08346 PcpA_N_like N-terminal 99.8 5.2E-17 1.1E-21 112.1 13.8 109 56-165 1-126 (126)
60 PRK06724 hypothetical protein; 99.8 7.3E-17 1.6E-21 113.5 14.6 107 55-166 6-122 (128)
61 cd07256 HPCD_C_class_II C-term 99.7 3.3E-17 7E-22 119.4 12.9 107 55-167 2-123 (161)
62 cd07249 MMCE Methylmalonyl-CoA 99.7 5.2E-17 1.1E-21 112.5 12.9 110 57-166 1-128 (128)
63 cd07258 PpCmtC_C C-terminal do 99.7 1.4E-16 3E-21 113.8 14.6 103 58-166 1-113 (141)
64 cd07237 BphC1-RGP6_C_like C-te 99.7 1.2E-16 2.6E-21 115.6 14.4 108 55-167 8-131 (154)
65 TIGR02295 HpaD 3,4-dihydroxyph 99.7 8.1E-17 1.7E-21 127.5 14.3 147 8-166 94-255 (294)
66 COG3324 Predicted enzyme relat 99.7 1.3E-16 2.8E-21 110.9 13.5 113 55-168 8-126 (127)
67 cd08344 MhqB_like_N N-terminal 99.7 1.2E-16 2.6E-21 109.2 13.1 106 56-167 2-109 (112)
68 cd08343 ED_TypeI_classII_C C-t 99.7 1.5E-16 3.2E-21 111.8 13.8 105 58-167 1-117 (131)
69 cd06587 Glo_EDI_BRP_like This 99.7 1.2E-16 2.5E-21 106.7 12.7 106 59-164 1-112 (112)
70 PRK10291 glyoxalase I; Provisi 99.7 3.5E-16 7.6E-21 109.5 14.3 106 62-167 2-120 (129)
71 cd07251 Glo_EDI_BRP_like_10 Th 99.7 2.9E-16 6.3E-21 107.8 13.0 107 60-166 2-120 (121)
72 PLN02300 lactoylglutathione ly 99.7 2.5E-16 5.4E-21 124.7 14.0 118 50-167 18-148 (286)
73 cd08358 Glo_EDI_BRP_like_21 Th 99.7 2.3E-15 5E-20 105.6 14.2 104 56-166 2-126 (127)
74 TIGR03211 catechol_2_3 catecho 99.7 2.2E-15 4.8E-20 119.8 13.9 107 55-167 3-118 (303)
75 TIGR02295 HpaD 3,4-dihydroxyph 99.7 3.6E-15 7.8E-20 118.0 14.0 106 55-167 3-115 (294)
76 PLN02300 lactoylglutathione ly 99.7 2.2E-14 4.8E-19 113.5 18.2 134 16-167 132-278 (286)
77 TIGR03213 23dbph12diox 2,3-dih 99.6 3.4E-15 7.5E-20 117.9 13.2 106 55-166 2-117 (286)
78 COG3565 Predicted dioxygenase 99.6 3.3E-15 7.1E-20 100.6 10.3 111 55-165 3-127 (138)
79 cd06588 PhnB_like Escherichia 99.5 1.4E-12 3.1E-17 91.3 13.8 104 61-165 4-128 (128)
80 COG3607 Predicted lactoylgluta 99.5 5.5E-13 1.2E-17 91.2 8.7 109 56-165 3-125 (133)
81 COG2514 Predicted ring-cleavag 99.5 2.1E-12 4.6E-17 99.3 12.9 112 55-167 9-126 (265)
82 PRK01037 trmD tRNA (guanine-N( 99.3 2E-11 4.4E-16 97.5 9.5 103 55-165 246-352 (357)
83 COG0346 GloA Lactoylglutathion 99.3 1.4E-11 3.1E-16 84.2 6.8 110 56-166 2-138 (138)
84 PF13669 Glyoxalase_4: Glyoxal 99.3 1.4E-10 3.1E-15 78.9 11.2 93 58-150 1-105 (109)
85 COG2764 PhnB Uncharacterized p 99.2 6.3E-10 1.4E-14 78.6 14.2 107 61-167 5-131 (136)
86 KOG2944 Glyoxalase [Carbohydra 99.2 1.7E-10 3.7E-15 82.1 11.0 54 114-167 115-168 (170)
87 KOG2943 Predicted glyoxalase [ 99.1 1.5E-09 3.2E-14 82.3 10.6 138 10-166 121-269 (299)
88 cd07250 HPPD_C_like C-terminal 99.0 3E-09 6.5E-14 79.7 10.3 89 55-143 2-112 (191)
89 TIGR01263 4HPPD 4-hydroxypheny 99.0 2.8E-08 6.2E-13 81.0 15.4 105 56-160 2-130 (353)
90 PRK10148 hypothetical protein; 98.9 2.8E-07 6E-12 66.3 15.0 105 61-167 6-141 (147)
91 TIGR01263 4HPPD 4-hydroxypheny 98.8 6.3E-08 1.4E-12 78.9 9.9 93 51-143 153-267 (353)
92 COG2514 Predicted ring-cleavag 98.6 5E-07 1.1E-11 69.9 10.2 85 19-103 113-217 (265)
93 PF14506 CppA_N: CppA N-termin 98.5 1.8E-05 3.8E-10 54.3 14.8 106 59-166 3-113 (125)
94 KOG2943 Predicted glyoxalase [ 98.4 4E-06 8.8E-11 63.9 9.9 105 55-166 16-142 (299)
95 PLN02875 4-hydroxyphenylpyruva 98.3 5.7E-06 1.2E-10 68.3 9.4 87 55-141 179-293 (398)
96 PF14696 Glyoxalase_5: Hydroxy 98.1 5.7E-05 1.2E-09 53.7 10.8 110 55-166 8-125 (139)
97 PF13468 Glyoxalase_3: Glyoxal 98.0 9.6E-05 2.1E-09 54.3 9.9 82 57-138 1-101 (175)
98 PF06983 3-dmu-9_3-mt: 3-demet 97.9 0.0012 2.6E-08 45.5 13.6 93 62-165 8-116 (116)
99 KOG0638 4-hydroxyphenylpyruvat 97.9 5.1E-05 1.1E-09 60.1 7.0 89 55-143 16-120 (381)
100 PLN02875 4-hydroxyphenylpyruva 97.9 0.00097 2.1E-08 55.3 14.9 88 57-144 1-122 (398)
101 PF15067 FAM124: FAM124 family 97.8 0.00027 5.8E-09 53.9 9.9 101 56-164 128-235 (236)
102 COG3185 4-hydroxyphenylpyruvat 97.6 0.00032 7E-09 56.4 7.5 134 11-144 119-275 (363)
103 COG3185 4-hydroxyphenylpyruvat 97.5 0.0025 5.4E-08 51.4 11.3 104 55-159 21-142 (363)
104 PF14507 CppA_C: CppA C-termin 97.0 0.0019 4.1E-08 43.2 5.0 90 55-164 4-100 (101)
105 PF13669 Glyoxalase_4: Glyoxal 95.8 0.043 9.3E-07 36.8 6.3 53 116-168 1-56 (109)
106 COG3865 Uncharacterized protei 95.3 0.67 1.4E-05 33.1 12.3 101 55-165 4-122 (151)
107 KOG0638 4-hydroxyphenylpyruvat 95.0 0.025 5.4E-07 45.2 3.3 93 51-143 173-291 (381)
108 PF13670 PepSY_2: Peptidase pr 88.6 2 4.4E-05 27.3 5.6 42 124-166 30-72 (83)
109 KOG2944 Glyoxalase [Carbohydra 86.7 0.48 1E-05 34.3 1.9 31 55-85 21-51 (170)
110 cd08353 Glo_EDI_BRP_like_7 Thi 83.3 10 0.00023 25.9 7.6 53 115-167 4-69 (142)
111 TIGR03645 glyox_marine lactoyl 72.9 29 0.00063 24.7 7.4 53 115-167 5-77 (162)
112 PLN02367 lactoylglutathione ly 70.3 29 0.00063 26.9 7.2 30 55-85 168-197 (233)
113 PF13468 Glyoxalase_3: Glyoxal 69.5 5.8 0.00013 28.8 3.1 24 55-78 152-175 (175)
114 cd06587 Glo_EDI_BRP_like This 68.5 26 0.00056 21.8 6.0 49 117-167 1-50 (112)
115 cd08352 Glo_EDI_BRP_like_1 Thi 68.3 30 0.00065 22.5 7.4 52 115-166 4-57 (125)
116 TIGR03081 metmalonyl_epim meth 68.0 26 0.00055 23.1 6.0 51 116-166 3-54 (128)
117 cd07249 MMCE Methylmalonyl-CoA 67.2 27 0.00058 22.9 5.9 51 116-167 2-55 (128)
118 PF08445 FR47: FR47-like prote 65.8 25 0.00053 22.4 5.2 25 60-85 58-82 (86)
119 cd07233 Glyoxalase_I Glyoxalas 64.8 36 0.00078 22.1 6.5 51 116-166 2-57 (121)
120 cd08342 HPPD_N_like N-terminal 63.6 28 0.00061 23.7 5.6 51 55-106 68-125 (136)
121 cd07250 HPPD_C_like C-terminal 63.2 34 0.00075 25.2 6.3 53 115-167 4-63 (191)
122 cd04895 ACT_ACR_1 ACT domain-c 62.4 23 0.0005 22.1 4.4 38 125-162 15-55 (72)
123 PLN03042 Lactoylglutathione ly 58.8 72 0.0016 23.6 8.2 42 114-155 27-69 (185)
124 cd08346 PcpA_N_like N-terminal 58.7 48 0.001 21.5 6.9 51 116-166 3-59 (126)
125 PF09142 TruB_C: tRNA Pseudour 57.7 19 0.00041 21.2 3.3 40 124-167 5-44 (56)
126 PF12681 Glyoxalase_2: Glyoxal 56.9 48 0.001 21.0 6.0 30 55-85 55-84 (108)
127 cd07263 Glo_EDI_BRP_like_16 Th 56.4 50 0.0011 21.0 6.2 49 117-165 1-52 (119)
128 cd07241 Glo_EDI_BRP_like_3 Thi 53.5 60 0.0013 21.0 7.2 51 116-166 3-55 (125)
129 PRK10291 glyoxalase I; Provisi 52.2 50 0.0011 22.1 5.2 50 55-105 64-121 (129)
130 PRK10140 putative acetyltransf 51.5 54 0.0012 22.6 5.5 34 56-90 112-146 (162)
131 COG4747 ACT domain-containing 50.6 83 0.0018 21.9 7.4 85 55-142 40-136 (142)
132 COG2605 Predicted kinase relat 46.9 23 0.0005 28.6 3.1 37 123-159 266-302 (333)
133 PF07494 Reg_prop: Two compone 46.7 25 0.00055 16.6 2.2 12 151-162 8-19 (24)
134 KOG4657 Uncharacterized conser 46.0 14 0.00029 28.5 1.6 25 63-87 143-167 (246)
135 cd07247 SgaA_N_like N-terminal 44.6 83 0.0018 20.1 6.1 30 55-85 60-89 (114)
136 PRK11478 putative lyase; Provi 44.6 89 0.0019 20.5 6.8 29 55-84 74-102 (129)
137 cd08347 PcpA_C_like C-terminal 44.0 1.1E+02 0.0025 21.5 6.7 49 116-167 3-53 (157)
138 cd07242 Glo_EDI_BRP_like_6 Thi 42.3 97 0.0021 20.3 6.2 26 116-141 3-32 (128)
139 PTZ00330 acetyltransferase; Pr 41.6 44 0.00096 22.7 3.7 27 56-85 115-141 (147)
140 PF03975 CheD: CheD chemotacti 41.2 56 0.0012 22.1 4.0 40 123-162 64-103 (114)
141 COG3254 Uncharacterized conser 41.1 71 0.0015 21.5 4.3 32 125-166 26-57 (105)
142 cd04882 ACT_Bt0572_2 C-termina 39.8 74 0.0016 18.2 4.4 24 116-139 41-64 (65)
143 COG0456 RimI Acetyltransferase 38.9 49 0.0011 23.2 3.6 29 58-87 127-156 (177)
144 cd04883 ACT_AcuB C-terminal AC 38.4 65 0.0014 19.0 3.7 24 119-142 48-71 (72)
145 PF13508 Acetyltransf_7: Acety 36.7 51 0.0011 19.9 3.0 22 58-82 58-79 (79)
146 cd04897 ACT_ACR_3 ACT domain-c 34.1 1.2E+02 0.0026 19.0 4.4 38 125-162 15-55 (75)
147 PRK13498 chemoreceptor glutami 33.1 71 0.0015 23.4 3.7 43 120-162 112-154 (167)
148 PF13176 TPR_7: Tetratricopept 33.0 31 0.00067 17.8 1.3 18 63-80 11-28 (36)
149 PRK09491 rimI ribosomal-protei 32.6 1.5E+02 0.0032 20.1 5.2 30 55-85 95-125 (146)
150 PRK13490 chemoreceptor glutami 32.6 72 0.0016 23.2 3.6 42 121-162 110-151 (162)
151 TIGR03585 PseH pseudaminic aci 32.5 1.1E+02 0.0023 20.9 4.5 35 56-91 109-144 (156)
152 PF00583 Acetyltransf_1: Acety 32.4 50 0.0011 19.8 2.5 25 56-81 58-83 (83)
153 COG3603 Uncharacterized conser 32.2 48 0.001 23.0 2.4 28 55-83 100-127 (128)
154 COG0051 RpsJ Ribosomal protein 31.7 1.3E+02 0.0028 20.3 4.4 42 119-160 12-58 (104)
155 PRK13497 chemoreceptor glutami 31.1 81 0.0018 23.5 3.7 42 121-162 110-151 (184)
156 PRK13495 chemoreceptor glutami 29.9 85 0.0018 22.8 3.6 42 121-162 103-144 (159)
157 PRK13494 chemoreceptor glutami 29.6 88 0.0019 22.8 3.6 42 121-162 112-153 (163)
158 PRK13493 chemoreceptor glutami 29.3 84 0.0018 24.0 3.6 42 121-162 137-178 (213)
159 PF07063 DUF1338: Domain of un 29.0 1.3E+02 0.0027 24.4 4.7 47 115-161 185-251 (302)
160 PRK10146 aminoalkylphosphonic 28.9 63 0.0014 21.8 2.8 29 55-84 108-137 (144)
161 cd04906 ACT_ThrD-I_1 First of 28.7 1.3E+02 0.0028 18.9 4.0 24 117-140 43-70 (85)
162 PF02208 Sorb: Sorbin homologo 28.7 14 0.00031 20.9 -0.5 22 57-78 12-33 (47)
163 PRK10975 TDP-fucosamine acetyl 28.3 1.1E+02 0.0024 22.1 4.2 30 55-85 158-188 (194)
164 TIGR00124 cit_ly_ligase [citra 28.3 1.6E+02 0.0034 24.1 5.2 33 55-90 82-114 (332)
165 cd00034 ChSh Chromo Shadow Dom 28.3 23 0.00049 20.7 0.3 19 62-80 35-53 (54)
166 PRK13488 chemoreceptor glutami 27.8 1E+02 0.0022 22.3 3.7 41 122-162 106-146 (157)
167 PRK13491 chemoreceptor glutami 27.2 1E+02 0.0022 23.3 3.7 41 122-162 114-154 (199)
168 PF00379 Chitin_bind_4: Insect 26.4 92 0.002 17.6 2.7 14 151-164 30-43 (52)
169 PRK13487 chemoreceptor glutami 26.0 1.1E+02 0.0023 23.2 3.7 43 120-162 124-166 (201)
170 COG5397 Uncharacterized conser 25.9 1.1E+02 0.0023 24.6 3.7 50 118-167 161-211 (349)
171 TIGR01046 S10_Arc_S20_Euk ribo 25.5 2E+02 0.0042 19.1 4.5 34 127-160 21-55 (99)
172 COG1871 CheD Chemotaxis protei 25.4 1.5E+02 0.0032 21.7 4.1 43 120-162 111-153 (164)
173 TIGR02382 wecD_rffC TDP-D-fuco 25.2 84 0.0018 22.9 3.0 29 55-84 155-184 (191)
174 PRK10514 putative acetyltransf 24.9 1.2E+02 0.0026 20.4 3.6 18 67-85 109-126 (145)
175 COG1437 CyaB Adenylate cyclase 24.8 2.9E+02 0.0064 20.5 9.8 76 57-138 78-161 (178)
176 smart00300 ChSh Chromo Shadow 24.5 28 0.00061 20.8 0.2 20 62-81 41-60 (61)
177 PF13673 Acetyltransf_10: Acet 24.1 79 0.0017 20.3 2.4 19 61-80 99-117 (117)
178 cd04908 ACT_Bt0572_1 N-termina 23.5 1.7E+02 0.0036 17.1 3.8 23 117-139 42-64 (66)
179 PRK13489 chemoreceptor glutami 23.2 1.3E+02 0.0028 23.4 3.7 42 121-162 123-164 (233)
180 TIGR02540 gpx7 putative glutat 22.2 1.1E+02 0.0023 21.4 2.9 19 149-167 120-138 (153)
181 KOG0178 20S proteasome, regula 22.1 92 0.002 23.9 2.6 14 148-161 143-156 (249)
182 PF10033 ATG13: Autophagy-rela 21.6 1.3E+02 0.0029 23.1 3.5 50 117-166 38-100 (233)
183 PRK12271 rps10p 30S ribosomal 21.3 2.5E+02 0.0055 18.7 4.4 34 127-160 22-56 (102)
184 PF13420 Acetyltransf_4: Acety 21.3 1.1E+02 0.0024 20.8 2.9 32 55-87 109-141 (155)
185 PRK10314 putative acyltransfer 21.2 89 0.0019 22.0 2.4 24 59-85 111-134 (153)
186 TIGR03448 mycothiol_MshD mycot 21.1 1.3E+02 0.0028 23.3 3.5 29 56-85 259-288 (292)
187 PF04659 Arch_fla_DE: Archaeal 21.0 77 0.0017 21.1 1.8 19 62-81 32-50 (99)
188 PRK03467 hypothetical protein; 20.9 2.9E+02 0.0062 19.8 4.8 44 123-166 5-50 (144)
189 PF01393 Chromo_shadow: Chromo 20.3 69 0.0015 19.0 1.3 19 63-81 39-57 (58)
No 1
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.86 E-value=2e-20 Score=127.91 Aligned_cols=109 Identities=21% Similarity=0.301 Sum_probs=87.7
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEec---ccEEEEEeCC-eEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHH
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCT---LRWAELQSGP-LKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKL 132 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~~~~~~~~~~-~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l 132 (168)
++|+.|.|+|+++|++||+++|||++.... ..++.+..++ ..+.+....... ...+...+++|.++|+++++++|
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~v~di~~~~~~l 79 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGDGGGDYAVFSTGGGAVGGLMKAPEPA-AGSPPGWLVYFAVDDVDAAAARV 79 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccCCCCceEEEEeCCccEEEEecCCCCC-CCCCCeEEEEEEeCCHHHHHHHH
Confidence 479999999999999999999999998765 4677777653 455665544332 22345567999999999999999
Q ss_pred HHCCCeEeccceeeC-CeEEEEEECCCCCEEEEEe
Q 040429 133 MALGAELDGSIKYEI-HGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 133 ~~~G~~~~~~~~~~~-~g~~~~~~DPdGn~iel~e 166 (168)
+++|+++..++...+ +++.++|+|||||.|+|+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 80 EAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred HHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 999999886666444 5699999999999999986
No 2
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.85 E-value=1.1e-19 Score=128.68 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=87.9
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc----cEEEEEeCCeEEEEEeCCCCCc-------ccCCCeEEEEEEeCCH
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL----RWAELQSGPLKLALMQSPSDHV-------VQNGNSSLLSFTVTDI 125 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~----~~~~~~~~~~~i~l~~~~~~~~-------~~~~~~~~~~~~v~dl 125 (168)
++|+.|.|+|+++|++||+++|||++..... .+..+..++..+.+........ .......|++|.|+|+
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~g~~~l~l~~~~~~~~~~~~~~~~~~~g~~hia~~V~Dv 80 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSEDKASYLLRQGDINFVLNSPLNSFAPVADFLEKHGDGVCDVAFRVDDA 80 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCCceEEEEEEcCCEEEEEecCCCCCCchHHHHHhcCCceEEEEEEeCCH
Confidence 5899999999999999999999999877533 2344555677777765322111 1233456899999999
Q ss_pred HHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 126 NSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 126 ~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
++.+++|+++|+++..++...++| +.++++|||||.|||+|.
T Consensus 81 da~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~ 123 (136)
T cd08342 81 AAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDR 123 (136)
T ss_pred HHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEec
Confidence 999999999999998888775556 899999999999999985
No 3
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.84 E-value=7.9e-20 Score=126.40 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=81.6
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeC-----CCCCcccCCCeEEEEEEeCCHHHHHH
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQS-----PSDHVVQNGNSSLLSFTVTDINSAVT 130 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~-----~~~~~~~~~~~~~~~~~v~dl~~~~~ 130 (168)
++.++.|.|+|+++|++||+++|||++....+.+..+. ++..+.+... ........+...+++|.|+|++++++
T Consensus 2 ~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~v~dvd~~~~ 80 (120)
T cd09011 2 KFKNPLLVVKDIEKSKKFYEKVLGLKVVMDFGENVTFE-GGFALQEGYSWLEGISKADIIEKSNNFELYFEEEDFDAFLD 80 (120)
T ss_pred EEEEEEEEECCHHHHHHHHHHhcCCEEeeccCceEEEe-ccceeccchhhhccCCcccccccCCceEEEEEehhhHHHHH
Confidence 68899999999999999999999999876544444332 2223322111 01111223345689999999999999
Q ss_pred HHHHCCC-eEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 131 KLMALGA-ELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 131 ~l~~~G~-~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
+|+++|+ ++..++...++| +.+||+|||||+|||.++
T Consensus 81 ~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 81 KLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred HHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 9999986 676666655555 899999999999999986
No 4
>PRK11478 putative lyase; Provisional
Probab=99.84 E-value=2.1e-19 Score=125.37 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=83.3
Q ss_pred ccccccEEEEEeCCHHHHHHHHHhccCCEEEEec-----ccE-EEEEe-CCeEEEEEeCCCCC----cccCCCeEEEEEE
Q 040429 53 AAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT-----LRW-AELQS-GPLKLALMQSPSDH----VVQNGNSSLLSFT 121 (168)
Q Consensus 53 ~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~-----~~~-~~~~~-~~~~i~l~~~~~~~----~~~~~~~~~~~~~ 121 (168)
...+++|+.|.|+|+++|++||+++|||++.... ..| ..+.. ++..+.+...+.+. .+......|++|.
T Consensus 3 ~i~~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~g~~hi~f~ 82 (129)
T PRK11478 3 GLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFS 82 (129)
T ss_pred CcceecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceeeEecCCCcEEEEEEecCCCCCCCCCCCCceeEEEEE
Confidence 3467999999999999999999999999986431 123 22322 45566666533221 1122334689999
Q ss_pred eCCHHHHHHHHHHCCCeEeccceeeC-CeEEEEEECCCCCEEEEEe
Q 040429 122 VTDINSAVTKLMALGAELDGSIKYEI-HGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 122 v~dl~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~DPdGn~iel~e 166 (168)
++|+++++++|+++|+++........ +.+++||+|||||.|||+|
T Consensus 83 v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~ 128 (129)
T PRK11478 83 VDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYE 128 (129)
T ss_pred eCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEe
Confidence 99999999999999999764333333 3488999999999999997
No 5
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.83 E-value=3.6e-19 Score=123.31 Aligned_cols=111 Identities=25% Similarity=0.381 Sum_probs=85.4
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEec--ccEEEEEeCCeEEEEEeCCC-----------CCcccCCCeEEEEEEeC
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCT--LRWAELQSGPLKLALMQSPS-----------DHVVQNGNSSLLSFTVT 123 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~~~~~~~~~~~~i~l~~~~~-----------~~~~~~~~~~~~~~~v~ 123 (168)
+.|+.|+|+|+++|++||+++|||++.... +.|..+..++..+.+..... ......+...+++|.|+
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHESGDYGELETGETTLAFASHDLAESNLKGGFVKADPAQPPAGFEIAFVTD 80 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecCCCcEEEecCCcEEEEEEcccccccccccCccCCccccCCCcEEEEEEcC
Confidence 468999999999999999999999986542 35666665666666553221 01111223357999999
Q ss_pred CHHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 124 DINSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
|+++++++++++|+++..++...++| +.++++|||||.|||++|
T Consensus 81 di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 81 DVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred CHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 99999999999999988777766666 788999999999999986
No 6
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.83 E-value=1.7e-19 Score=129.07 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=81.2
Q ss_pred cccccccEEEEEeCCHHHHHHHHHhccCCEEEEec---cc---EEEEE---eCCeEEEEEeCCCCCcccCCCeEEEEEEe
Q 040429 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT---LR---WAELQ---SGPLKLALMQSPSDHVVQNGNSSLLSFTV 122 (168)
Q Consensus 52 m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~~---~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~~~~~v 122 (168)
|...+++|+.|.|+|+++|++||+++|||++.... .. ...+. ...+.+.+...+ .+...|++|.|
T Consensus 2 ~~~~~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~~h~~~~~~~~------~~~~~Hiaf~v 75 (143)
T cd07243 2 IGAHRLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNKPHDIAFVGGP------DGKLHHFSFFL 75 (143)
T ss_pred CCCceeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCCcceEEEecCC------CCCceEEEEEc
Confidence 34478999999999999999999999999976552 11 12221 234566554332 23456899999
Q ss_pred CCHHHH---HHHHHHCCCeEe-ccceeeC-CeEEEEEECCCCCEEEEEe
Q 040429 123 TDINSA---VTKLMALGAELD-GSIKYEI-HGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 123 ~dl~~~---~~~l~~~G~~~~-~~~~~~~-~g~~~~~~DPdGn~iel~e 166 (168)
+|++++ .++|+++|+++. ++.+++. .++++||.|||||.|||++
T Consensus 76 ~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~ 124 (143)
T cd07243 76 ESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFA 124 (143)
T ss_pred CCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEec
Confidence 998885 568999999875 6666664 3588999999999999975
No 7
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.83 E-value=4.8e-19 Score=125.89 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=89.3
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCc-ccCCCeEEEEEEeC--CHHHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHV-VQNGNSSLLSFTVT--DINSAVTK 131 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~v~--dl~~~~~~ 131 (168)
.+++|+.|.|+|+++|++||+++|||++....+..+.+..++..+.+...+.... ...+...|++|.++ |+++++++
T Consensus 3 ~~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~g~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dv~~~~~~ 82 (139)
T PRK04101 3 KGINHICFSVSNLEKSIEFYEKVLGAKLLVKGRKTAYFDLNGLWIALNEEKDIPRNEIHQSYTHIAFSIEEEDFDHWYQR 82 (139)
T ss_pred CcEEEEEEEecCHHHHHHHHHhccCCEEEeecCeeEEEecCCeEEEeeccCCCCCccCCCCeeEEEEEecHHHHHHHHHH
Confidence 5799999999999999999999999999877666777777777787765432211 11233457888886 99999999
Q ss_pred HHHCCCeEeccc-eeeCCeEEEEEECCCCCEEEEEee
Q 040429 132 LMALGAELDGSI-KYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 132 l~~~G~~~~~~~-~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++++|+++...+ ...++++.+||.|||||+|||.+.
T Consensus 83 l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~ 119 (139)
T PRK04101 83 LKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTG 119 (139)
T ss_pred HHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 999999986433 455566999999999999999875
No 8
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.82 E-value=4.7e-19 Score=124.86 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=87.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCC-cccCCCeEEEEEEeC--CHHHHHHHHH
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDH-VVQNGNSSLLSFTVT--DINSAVTKLM 133 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~-~~~~~~~~~~~~~v~--dl~~~~~~l~ 133 (168)
|+||.|.|+|++++++||+++|||++....+..+.+..++..+.+...+... ....+...|++|.++ |+++++++|+
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~hiaf~v~~~dld~~~~~l~ 80 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGEKTAYFTIGGTWLALNEEPDIPRNEIRQSYTHIAFTIEDSEFDAFYTRLK 80 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCCccceEeeCceEEEEEccCCCCcCCcCccceEEEEEecHHHHHHHHHHHH
Confidence 6899999999999999999999999887666556666777788776544321 111234567999886 4999999999
Q ss_pred HCCCeEeccce-eeCCeEEEEEECCCCCEEEEEee
Q 040429 134 ALGAELDGSIK-YEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 134 ~~G~~~~~~~~-~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++|+.+..++. ..++++.+||+|||||+|||+++
T Consensus 81 ~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~ 115 (131)
T cd08363 81 EAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTG 115 (131)
T ss_pred HcCCcccCCCccccCcceEEEEECCCCCEEEEecC
Confidence 99999764433 44456899999999999999875
No 9
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.82 E-value=1.3e-18 Score=120.63 Aligned_cols=112 Identities=19% Similarity=0.230 Sum_probs=87.7
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCC--eEEEEEeCCCCC--cccCCCeEEEEEEeC---CHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGP--LKLALMQSPSDH--VVQNGNSSLLSFTVT---DINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~--~~i~l~~~~~~~--~~~~~~~~~~~~~v~---dl~~ 127 (168)
++++|+.|.|+|++++++||+++|||++....+.+..+..++ +.|.+...+... ........|++|.+. ++++
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~~~~~l~~~~~~~~l~l~~~~~~~~~~~~~~~~~hi~f~v~~~~~v~~ 80 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERTDSTAVLGTGGKRPLLVLEEDPDAPPAPPGATGLYHFAILLPSRADLAA 80 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcCCCEEEEecCCCeEEEEEEeCCCCCcccCCCCcEEEEEEECCCHHHHHH
Confidence 378999999999999999999999999998876777776654 677777655421 122334568999986 5899
Q ss_pred HHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 128 AVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++.++|+.+.++... ..++.+||.|||||++||+..
T Consensus 81 ~~~~l~~~g~~~~~~~~~-~~~~~~~~~DPdG~~iEi~~~ 119 (125)
T cd07255 81 ALRRLIELGIPLVGASDH-LVSEALYLSDPEGNGIEIYAD 119 (125)
T ss_pred HHHHHHHcCCceeccccc-cceeEEEEECCCCCEEEEEEe
Confidence 999999999987655433 334789999999999999865
No 10
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.82 E-value=8.9e-19 Score=120.53 Aligned_cols=108 Identities=22% Similarity=0.358 Sum_probs=84.4
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCC--eEEEEEeCCCCC-----cccCCCeEEEEEEeCCHHHHHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGP--LKLALMQSPSDH-----VVQNGNSSLLSFTVTDINSAVTK 131 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~--~~i~l~~~~~~~-----~~~~~~~~~~~~~v~dl~~~~~~ 131 (168)
+.+|.|+|+++|++||+++|||++....+.+..+..++ ..+.+....... ....+...+++|.++|+++++++
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~v~did~~~~~ 83 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDSDWYVSLRSPDGGVELAFMLPGHETVPAAQYQFQGQGLILNFEVDDVDAEYER 83 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEeccCcEEEEecCCCceEEEEccCCCCCCcchhcccCCceEEEEEEECCHHHHHHH
Confidence 56899999999999999999999988766777776543 455555433221 11233445799999999999999
Q ss_pred HHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 132 LMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 132 l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
++++|+++..++...++| +.++++|||||.|||+|
T Consensus 84 l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 84 LKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred HHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 999999887666654555 89999999999999986
No 11
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.82 E-value=1.1e-18 Score=118.35 Aligned_cols=106 Identities=25% Similarity=0.323 Sum_probs=85.9
Q ss_pred EEEeCCHHHHHHHHHhccCCEEEEec--ccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHHHCCCe
Q 040429 61 LQLHKDVPKAARFYSEGLDFTVNVCT--LRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLMALGAE 138 (168)
Q Consensus 61 ~l~v~D~~~a~~FY~~vLGf~~~~~~--~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~~~G~~ 138 (168)
+|.|+|+++|++||+++|||++.... ..|+.+..++..+.+...+...........+++|.++|++++++++.++|+.
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~ 82 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHPEPGYAFLSRGGAQLMLSEHDGDEPVPLGRGGSVYIEVEDVDALYAELKAKGAD 82 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcCCCcEEEEEeCCEEEEEeccCCCCCCCCCCcEEEEEEeCCHHHHHHHHHHcCCc
Confidence 68999999999999999999988775 5687777788888887665433222334457999999999999999999998
Q ss_pred -EeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 139 -LDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 139 -~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
+..++....+| +.++++||+||.|||+|
T Consensus 83 ~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 83 LIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred ceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 55555544555 89999999999999986
No 12
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.81 E-value=1.1e-18 Score=120.79 Aligned_cols=106 Identities=18% Similarity=0.220 Sum_probs=83.2
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEecc-cEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHHHCCCe
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVCTL-RWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLMALGAE 138 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~~~-~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~~~G~~ 138 (168)
..|.|+|+++|++||++ |||++....+ .|+.+..++..+.|...+.... .....+++|.++|+++++++|+++|+.
T Consensus 6 ~~l~v~Dl~~s~~FY~~-lG~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~--~~~~~~~~~~v~dvd~~~~~l~~~G~~ 82 (120)
T cd08350 6 PNLPSRDLDATEAFYAR-LGFSVGYRQAAGYMILRRGDLELHFFAHPDLDP--ATSPFGCCLRLPDVAALHAEFRAAGLP 82 (120)
T ss_pred ceeEcCCHHHHHHHHHH-cCCEEEecCCCCEEEEEcCCEEEEEEecCcCCC--CCCcceEEEEeCCHHHHHHHHHHhCcc
Confidence 57999999999999999 9999988766 6888877888888876542211 112346889999999999999999997
Q ss_pred Ee-------ccceee-CCeEEEEEECCCCCEEEEEeeC
Q 040429 139 LD-------GSIKYE-IHGKVAAMRCIDGHMLGLYEPA 168 (168)
Q Consensus 139 ~~-------~~~~~~-~~g~~~~~~DPdGn~iel~e~~ 168 (168)
+. .++... ++++.++|+|||||.|||.|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~~ 120 (120)
T cd08350 83 ETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQPV 120 (120)
T ss_pred ccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecCC
Confidence 42 233333 4448999999999999999873
No 13
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.81 E-value=1.3e-18 Score=121.00 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=82.1
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe-CCeEEEEEeCCCCCcccCCCeEEEEEEeC--CHHHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS-GPLKLALMQSPSDHVVQNGNSSLLSFTVT--DINSAVTK 131 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~~~~~~~~~v~--dl~~~~~~ 131 (168)
.+++|+.|.|+|+++|++||+++|||++......++.+.. ++..+.+...+. .....|++|.++ |+++++++
T Consensus 3 ~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~h~a~~v~~~dl~~~~~~ 77 (123)
T cd08351 3 VTLNHTIVPARDREASAEFYAEILGLPWAKPFGPFAVVKLDNGVSLDFAQPDG-----EIPPQHYAFLVSEEEFDRIFAR 77 (123)
T ss_pred ceEeEEEEEcCCHHHHHHHHHHhcCCEeeeccCCEEEEEcCCCcEEEEecCCC-----CCCcceEEEEeCHHHHHHHHHH
Confidence 7899999999999999999999999998875544544443 445666654321 122346777775 79999999
Q ss_pred HHHCCCeEecccee--------eCCeEEEEEECCCCCEEEEEee
Q 040429 132 LMALGAELDGSIKY--------EIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 132 l~~~G~~~~~~~~~--------~~~g~~~~~~DPdGn~iel~e~ 167 (168)
|+++|+++...+.. .++++.+||+|||||.|||++.
T Consensus 78 l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 78 IRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred HHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 99999997654432 2455999999999999999874
No 14
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.81 E-value=1.7e-18 Score=119.31 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=86.4
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc--cEEEEEeCCeEEEEEeCCCCC----cccCCCeEEEEEEeCC-HHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL--RWAELQSGPLKLALMQSPSDH----VVQNGNSSLLSFTVTD-INS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~--~~~~~~~~~~~i~l~~~~~~~----~~~~~~~~~~~~~v~d-l~~ 127 (168)
.+++|+.|.|+|++++++||+++|||++....+ .+..+..++..+.+....... ........|++|.+++ +++
T Consensus 2 ~~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~hi~~~~~~~~~~ 81 (125)
T cd07253 2 KRIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVGRKALRFGSQKINLHPVGGEFEPAAGSPGPGSDDLCLITEPPIDE 81 (125)
T ss_pred cccceEEEEecCHHHHHHHHHHHhCceeecccccCCceEEEeCCEEEEEecCCCccCcCccCCCCCCceEEEEecccHHH
Confidence 478999999999999999999999999988755 666677677777776543221 1112234579999964 999
Q ss_pred HHHHHHHCCCeEecccee--e--CCeEEEEEECCCCCEEEEEe
Q 040429 128 AVTKLMALGAELDGSIKY--E--IHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~--~--~~g~~~~~~DPdGn~iel~e 166 (168)
++++|.++|+++...+.. + +.++.+||+|||||+||+.+
T Consensus 82 ~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~ 124 (125)
T cd07253 82 LVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSN 124 (125)
T ss_pred HHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeee
Confidence 999999999987654432 1 23478999999999999986
No 15
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.81 E-value=1.4e-18 Score=118.51 Aligned_cols=108 Identities=27% Similarity=0.356 Sum_probs=84.2
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecc-----cEEEEEeC---CeEEEEEeCCCCC---cccCCCeEEEEEEeCCHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTL-----RWAELQSG---PLKLALMQSPSDH---VVQNGNSSLLSFTVTDINS 127 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~-----~~~~~~~~---~~~i~l~~~~~~~---~~~~~~~~~~~~~v~dl~~ 127 (168)
|+.|.|+|++++++||+++|||++..+.. .|..+... +..+.+...+... ....+...+++|.++|+++
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~di~~ 80 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPANPAAMSGLQPGGTPGLVLATDDIDA 80 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCCCccccccccCCCceEEEEEehHHHH
Confidence 78999999999999999999999987642 34444332 4566666544332 1223455689999999999
Q ss_pred HHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 128 AVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
++++|+++|+++..++....+++.+|++|||||+|||+|
T Consensus 81 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 81 TYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred HHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 999999999998877755556799999999999999986
No 16
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.81 E-value=1.9e-18 Score=121.75 Aligned_cols=110 Identities=19% Similarity=0.258 Sum_probs=82.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEeccc--E-----EEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeC--CH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR--W-----AELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVT--DI 125 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~--~-----~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~--dl 125 (168)
.+++|+.|.|+|+++|++||+++|||++...... + ..+..++..+.+.....+ ..+...|++|.++ |+
T Consensus 3 ~~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~Hiaf~v~~~~l 79 (131)
T cd08364 3 EGLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFLIGGLWIAIMEGDSL---QERTYNHIAFKISDSDV 79 (131)
T ss_pred ccEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEEcCCeEEEEecCCCC---CCCCceEEEEEcCHHHH
Confidence 5799999999999999999999999987665321 1 122335667777643322 1223568999997 79
Q ss_pred HHHHHHHHHCCCeEeccceeeC-CeEEEEEECCCCCEEEEEee
Q 040429 126 NSAVTKLMALGAELDGSIKYEI-HGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 126 ~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~DPdGn~iel~e~ 167 (168)
+++.++|+++|+.+..+....+ .++.+||+|||||.|||..+
T Consensus 80 d~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 80 DEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTG 122 (131)
T ss_pred HHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecC
Confidence 9999999999998764433233 46999999999999999875
No 17
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.81 E-value=7.8e-19 Score=118.53 Aligned_cols=108 Identities=19% Similarity=0.197 Sum_probs=83.1
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc---cEEEEEeCC-eEEEEEeCCCCCc--ccCCCeEEEEEEeCCHHHHHH
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL---RWAELQSGP-LKLALMQSPSDHV--VQNGNSSLLSFTVTDINSAVT 130 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~---~~~~~~~~~-~~i~l~~~~~~~~--~~~~~~~~~~~~v~dl~~~~~ 130 (168)
|+|+.|.|+|++++++||+++|||++..... ....+..++ ..+.+...+.... ...+...+++|.++|++++++
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 80 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLFPGAWLYAGDGPQLHLIEEDPPDALPEGPGRDDHIAFRVDDLDAFRA 80 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCCCceEEEeCCCcEEEEEecCCCccccCCCcccceEEEEeCCHHHHHH
Confidence 6899999999999999999999999876532 223344433 3677776554321 123345689999999999999
Q ss_pred HHHHCCCeEeccceeeCCeEEEEEECCCCCEEEE
Q 040429 131 KLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGL 164 (168)
Q Consensus 131 ~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel 164 (168)
+++++|+.+..++...++++.+||.|||||.|||
T Consensus 81 ~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 81 RLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred HHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 9999999987665554556889999999999996
No 18
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.81 E-value=1.6e-18 Score=123.05 Aligned_cols=112 Identities=23% Similarity=0.286 Sum_probs=83.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc---c--------------EEEEEe--CCeEEEEEeCCCCC-------
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL---R--------------WAELQS--GPLKLALMQSPSDH------- 108 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~---~--------------~~~~~~--~~~~i~l~~~~~~~------- 108 (168)
.+++|+.|.|+|+++|++||++ |||++..... . +..+.. ++..|.|.....+.
T Consensus 2 ~~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~~~~~~~~~~~~ 80 (142)
T cd08353 2 SRMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKFHHPAVIADHRP 80 (142)
T ss_pred ceeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEecCCCCcCcCCC
Confidence 4799999999999999999999 9998765421 1 122222 45677776532211
Q ss_pred -cccCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 109 -VVQNGNSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 109 -~~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
.....+..|++|.|+|+++.+++|+++|+++..++....++ +.+||+|||||.|||+|.
T Consensus 81 ~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 81 APVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred CCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 11123355899999999999999999999988766544445 889999999999999985
No 19
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.80 E-value=2e-18 Score=119.53 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=80.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec-ccEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeC---CHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT-LRWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVT---DIN 126 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~-~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~ 126 (168)
.+++|+.|.|+|+++|++||+++|||++.... +..+.+.. +++.+.+.... .....|++|.+. |++
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~hiaf~v~~~~dv~ 76 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDDQGRVYLKAWDEFDHHSIVLREAD------TAGLDFMGFKVLDDADLE 76 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecCCceEEEEccCCCcccEEEeccCC------CCCeeEEEEEeCCHHHHH
Confidence 68999999999999999999999999987764 33444432 23555553221 123457999996 899
Q ss_pred HHHHHHHHCCCeEeccce-eeC-CeEEEEEECCCCCEEEEEee
Q 040429 127 SAVTKLMALGAELDGSIK-YEI-HGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~~-~~~-~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++|+++|+++...+. ..+ .++.+||+|||||+|||++.
T Consensus 77 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~ 119 (122)
T cd07265 77 KLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYAD 119 (122)
T ss_pred HHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEe
Confidence 999999999999764332 233 35889999999999999875
No 20
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.80 E-value=1.5e-18 Score=119.81 Aligned_cols=110 Identities=18% Similarity=0.159 Sum_probs=80.0
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEe--c--cc--EEEEEe-CCeEEEEEeCCCCCc----ccCCCeEEEEEEeC-
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVC--T--LR--WAELQS-GPLKLALMQSPSDHV----VQNGNSSLLSFTVT- 123 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~--~--~~--~~~~~~-~~~~i~l~~~~~~~~----~~~~~~~~~~~~v~- 123 (168)
+++|+.|.|+|+++|++||+++|||+.... . .. ...+.. ++..+.+.+.+.... ...+...|++|.|+
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~hi~f~v~~ 80 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRPDIAPSPNEGERTGWAHLAFSVGS 80 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCcccCCCcccCCCCceEEEEEECCC
Confidence 578999999999999999999999997543 1 11 112222 456777775433211 12234568999995
Q ss_pred --CHHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEE
Q 040429 124 --DINSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLY 165 (168)
Q Consensus 124 --dl~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~ 165 (168)
|+++++++|+++|+++..++.....| +.++++|||||.|||.
T Consensus 81 ~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 81 KEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred HHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 58999999999999988766544455 5678999999999983
No 21
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.80 E-value=3.8e-18 Score=124.00 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=85.5
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe-C---CeEEEEEeCCCCC--cccCCCeEEEEEEeCC---HH
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS-G---PLKLALMQSPSDH--VVQNGNSSLLSFTVTD---IN 126 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~-~---~~~i~l~~~~~~~--~~~~~~~~~~~~~v~d---l~ 126 (168)
.++|+.|.|+|+++|.+||+++|||++.........+.. + ++.|++.+.+... ....+...|++|.|+| ++
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~Hiaf~v~d~~dvd 80 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEGDRVRLEEGGGGPGAVVDVLEEPDQPRGRPGAGTVHHVAFRVPDDEELE 80 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeCCEEEEEecCCCCCCEEEEEeCCCCCCCcccCCceEEEEEECCCHHHHH
Confidence 378999999999999999999999999876554444433 3 7889988754321 1223455689999988 89
Q ss_pred HHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 127 SAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++|+++|+.+..+ ....+++.+||+|||||.|||+..
T Consensus 81 ~~~~~L~~~Gv~~~~~-~~~~~~~s~yf~DPdG~~iEl~~~ 120 (157)
T cd08347 81 AWKERLEALGLPVSGI-VDRFYFKSLYFREPGGILFEIATD 120 (157)
T ss_pred HHHHHHHHCCCCcccc-cccccEEEEEEECCCCcEEEEEEC
Confidence 9999999999986443 333345889999999999999874
No 22
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.80 E-value=3.2e-18 Score=118.48 Aligned_cols=110 Identities=20% Similarity=0.226 Sum_probs=82.7
Q ss_pred cccccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeC---C
Q 040429 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVT---D 124 (168)
Q Consensus 52 m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---d 124 (168)
|...+++|+.|.|+|+++|.+||+++|||++....+..+.+.. .++.+.+...+ .....|++|.++ +
T Consensus 2 ~~i~~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~------~~~~~h~af~v~~~~~ 75 (121)
T cd09013 2 FDIAHLAHVELLTPKPEESLWFFTDVLGLEETGREGQSVYLRAWGDYEHHSLKLTESP------EAGLGHIAWRASSPEA 75 (121)
T ss_pred CCccEeeEEEEEeCCHHHHHHHHHhCcCCEEEeecCCeEEEEeccCCCccEEEEeeCC------CCceEEEEEEcCCHHH
Confidence 3446899999999999999999999999999887655555543 23556554432 123457999986 6
Q ss_pred HHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 125 INSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++++++++|+++.........+..+||+|||||.+|++..
T Consensus 76 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 118 (121)
T cd09013 76 LERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWE 118 (121)
T ss_pred HHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEe
Confidence 8888999999999864322223456789999999999999854
No 23
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.80 E-value=1.8e-18 Score=118.88 Aligned_cols=103 Identities=18% Similarity=0.210 Sum_probs=81.1
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHHHCCCeE
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLMALGAEL 139 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~ 139 (168)
..|+|+|+++|++||++ |||++....+.++.+..++..+.+....... .....+++|.|+|+++++++|+++|+++
T Consensus 5 ~~l~v~Dl~~s~~FY~~-LGf~~~~~~~~~~~l~~~~~~l~l~~~~~~~---~~~~~~~~~~v~did~~~~~l~~~G~~~ 80 (113)
T cd08356 5 PFIPAKDFAESKQFYQA-LGFELEWENDNLAYFRLGNCAFYLQDYYVKD---WAENSMLHLEVDDLEAYYEHIKALGLPK 80 (113)
T ss_pred eccccccHHHHHHHHHH-hCCeeEecCCCEEEEEcCCEEEEeecCCCcc---cccCCEEEEEECCHHHHHHHHHHcCCcc
Confidence 47899999999999998 9999998887888888888888775532221 1223468899999999999999999864
Q ss_pred e------ccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 140 D------GSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 140 ~------~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
. .+....++++.++|+|||||+|+|.|
T Consensus 81 ~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 81 KFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred cccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 2 22223444599999999999999975
No 24
>PLN02367 lactoylglutathione lyase
Probab=99.80 E-value=8.5e-18 Score=128.16 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=88.8
Q ss_pred cccccccccEEEEEeCCHHHHHHHHHhccCCEEEEec--c--cE--EEEEe------------------C-CeEEEEEeC
Q 040429 50 RVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT--L--RW--AELQS------------------G-PLKLALMQS 104 (168)
Q Consensus 50 ~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~--~~--~~~~~------------------~-~~~i~l~~~ 104 (168)
.......++|+.|.|+|+++|++||+++|||++.... + .+ ..+.. + +..|.|...
T Consensus 69 ~~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~~r~~~~~~~~~~LELt~n 148 (233)
T PLN02367 69 EATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPTERTVWTFGQKATIELTHN 148 (233)
T ss_pred CCCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccccceeeccCCCCEEEEecC
Confidence 3333478999999999999999999999999987752 1 12 22211 1 346777654
Q ss_pred CCCCc------cc-----CCCeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 105 PSDHV------VQ-----NGNSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 105 ~~~~~------~~-----~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
.+... -+ +.+..|++|.|+|+++.+++|+++|+.+..++..+.+.+.+|++|||||+|||+|+
T Consensus 149 ~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIkDPDGn~IEL~e~ 222 (233)
T PLN02367 149 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIKDPDGYWIEIFDL 222 (233)
T ss_pred CCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEECCCCCEEEEEec
Confidence 33210 01 13567899999999999999999999998777766666788999999999999986
No 25
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.80 E-value=4.3e-18 Score=116.12 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=80.5
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe---CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHHHCC
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS---GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLMALG 136 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~~~G 136 (168)
.+|.|+|+++|++||+++|||++.........+.. +++.+.+...+.. .....+++|.++|+++++++|+++|
T Consensus 4 ~~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~v~d~~~~~~~l~~~G 79 (112)
T cd07238 4 PNLPVADPEAAAAFYADVLGLDVVMDHGWIATFASPQNMTVQVSLATEGGT----ATVVPDLSIEVDDVDAALARAVAAG 79 (112)
T ss_pred ceEecCCHHHHHHHHHHhcCceEEEcCCceEEEeecCCCCcEEEEecCCCC----CCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 47899999999999999999998764333333433 2566776643321 1223479999999999999999999
Q ss_pred CeEeccceeeCCe-EEEEEECCCCCEEEEEeeC
Q 040429 137 AELDGSIKYEIHG-KVAAMRCIDGHMLGLYEPA 168 (168)
Q Consensus 137 ~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~~ 168 (168)
+.+..++....+| +.+|+.|||||.|+|++++
T Consensus 80 ~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~~ 112 (112)
T cd07238 80 FAIVYGPTDEPWGVRRFFVRDPFGKLVNILTHR 112 (112)
T ss_pred CeEecCCccCCCceEEEEEECCCCCEEEEEEcC
Confidence 9987666544455 8999999999999999874
No 26
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.80 E-value=3.7e-18 Score=119.05 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=80.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeCC---HHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTD---INSAV 129 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~d---l~~~~ 129 (168)
.+|.|+.|.|+|+++|.+||+++|||++....+..+.+.. .++.+++.... ....+++|.++| +++++
T Consensus 5 ~~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~~~~~l~~~~~~~~i~l~~~~-------~~~~~iaf~v~~~~dv~~~~ 77 (124)
T cd08361 5 QDIAYVRLGTRDLAGATRFATDILGLQVAERTAKATYFRSDARDHTLVYIEGD-------PAEQASGFELRDDDALESAA 77 (124)
T ss_pred EEeeEEEEeeCCHHHHHHHHHhccCceeccCCCCeEEEEcCCccEEEEEEeCC-------CceEEEEEEECCHHHHHHHH
Confidence 6899999999999999999999999998776554444444 35666765432 123468999975 99999
Q ss_pred HHHHHCCCeEeccce----eeCCeEEEEEECCCCCEEEEEee
Q 040429 130 TKLMALGAELDGSIK----YEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 130 ~~l~~~G~~~~~~~~----~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++++++|+++...+. ....++++||+|||||.||++..
T Consensus 78 ~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~ 119 (124)
T cd08361 78 TELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVR 119 (124)
T ss_pred HHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEe
Confidence 999999998754322 12234788999999999999864
No 27
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.80 E-value=3.1e-18 Score=118.71 Aligned_cols=108 Identities=24% Similarity=0.212 Sum_probs=82.6
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEe--CCHHHHHHHHH
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTV--TDINSAVTKLM 133 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v--~dl~~~~~~l~ 133 (168)
+++|+.|.|+|++++++||+++|||++....+....+..++..+.+...+.. +..+...+++|.+ +|+++++++++
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~hi~f~v~~~dl~~~~~~l~ 78 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWDKGAYLEAGDLWLCLSVDANV--GPAKDYTHYAFSVSEEDFASLKEKLR 78 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecCCceEEecCCEEEEEecCCCC--CCCCCeeeEEEEeCHHHHHHHHHHHH
Confidence 4789999999999999999999999988765555555556666665433322 1123345788887 68999999999
Q ss_pred HCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 134 ALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 134 ~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++|+++..++.. .++.+||.|||||.|||++.
T Consensus 79 ~~G~~~~~~~~~--~~~~~~f~DPdG~~ie~~~~ 110 (121)
T cd07244 79 QAGVKEWKENTS--EGDSFYFLDPDGHKLELHVG 110 (121)
T ss_pred HcCCcccCCCCC--CccEEEEECCCCCEEEEEeC
Confidence 999987654332 35789999999999999874
No 28
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.80 E-value=3.2e-18 Score=118.38 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=80.4
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc--cEEEEEeC-CeEEEEEeCCC-----C-CcccCCCeEEEEEEe---CC
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL--RWAELQSG-PLKLALMQSPS-----D-HVVQNGNSSLLSFTV---TD 124 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~--~~~~~~~~-~~~i~l~~~~~-----~-~~~~~~~~~~~~~~v---~d 124 (168)
++|+.|.|+|+++|++||+. |||++..... .++.+..+ +..+.+..... + ..+..+...+++|.+ +|
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~d 79 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEADDEPHVEAVLPGGVRLAWDTVESIRSFTPGWTPTGGHRIALAFLCETPAE 79 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcCCCCcEEEEeCCCEEEEEEcccceeeecCCCCCCCCCcEEEEEEcCCHHH
Confidence 57999999999999999976 9999876543 46666554 56666543211 1 111223345677876 48
Q ss_pred HHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEE
Q 040429 125 INSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLY 165 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~ 165 (168)
+++++++|+++|+++..++...++| +.++|+|||||.|||+
T Consensus 80 vd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 80 VDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred HHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 9999999999999887776655556 8899999999999997
No 29
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.79 E-value=5.9e-18 Score=114.32 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=79.7
Q ss_pred EEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCe----EEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHHHCCC
Q 040429 62 QLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPL----KLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLMALGA 137 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~~~G~ 137 (168)
|+|+|+++|++||+++|||++....+.+..+..+.. ...+.+.+.. ........+++|.|+|+++++++++++|+
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~dv~~~~~~l~~~G~ 79 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDPDYVDFSLGFRFHDGVIEFLQFPDP-PGPPGGGFHLCFEVEDVDALYERLKELGA 79 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEETSEEEEEETEEEEEEEEEEEEEESS-SSSSSSEEEEEEEESHHHHHHHHHHHTTS
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCCCeEEEEeccchhhhhHHHccCCcc-ccCCCceeEEEEEEcCHHHHHHHHHHCCC
Confidence 789999999999999999999998777777776421 1223332222 22244566899999999999999999999
Q ss_pred eEeccceeeCCe-EEEEEECCCCCEEEEE
Q 040429 138 ELDGSIKYEIHG-KVAAMRCIDGHMLGLY 165 (168)
Q Consensus 138 ~~~~~~~~~~~g-~~~~~~DPdGn~iel~ 165 (168)
++..++...++| +.+++.|||||.|||+
T Consensus 80 ~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 80 EIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp EEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred eEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 988777766666 9999999999999996
No 30
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=3.9e-18 Score=116.59 Aligned_cols=107 Identities=23% Similarity=0.224 Sum_probs=85.8
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe-CCeEEEEEeCCCCCc--ccCCCeEEEEEEeCC---HHHHHHHHH
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS-GPLKLALMQSPSDHV--VQNGNSSLLSFTVTD---INSAVTKLM 133 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~--~~~~~~~~~~~~v~d---l~~~~~~l~ 133 (168)
+.|.|+|+++|++||+++|||++....+.++.+.. ++..+.+...+.... ...+...+++|.+++ ++++++++.
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 81 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELSPTFALFVLGSGVKLGLWSRHTVEPASDATGGGSELAFMVDDGAAVDALYAEWQ 81 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCCCceEEEEeCCCcEEEEeeccccCCCCCCCCCceEEEEEcCCHHHHHHHHHHHH
Confidence 67999999999999999999998877666777765 567777776554321 123345679999975 888999999
Q ss_pred HCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 134 ALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 134 ~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
++|+++..++...++|+.++|+|||||.|||+.
T Consensus 82 ~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 82 AKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred HCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 999998877776677788999999999999973
No 31
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=7.1e-18 Score=116.16 Aligned_cols=112 Identities=29% Similarity=0.329 Sum_probs=84.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec-----ccEEE-EEe-CCeEEEEEeCCCCC----cccCCCeEEEEEEeC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT-----LRWAE-LQS-GPLKLALMQSPSDH----VVQNGNSSLLSFTVT 123 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~-----~~~~~-~~~-~~~~i~l~~~~~~~----~~~~~~~~~~~~~v~ 123 (168)
.+++|+.|.|+|+++|++||+++|||++.... ..|.. +.. ++..+.+...+... .+......|++|.++
T Consensus 2 ~~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~h~~~~v~ 81 (125)
T cd08352 2 FGIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFPNPPERPSYPEACGLRHLAFSVE 81 (125)
T ss_pred CccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcCCCCCCCCCCcCCCceEEEEEeC
Confidence 47899999999999999999999999987652 13432 222 55566665433221 111234468999999
Q ss_pred CHHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 124 DINSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
|+++++++|+++|+.+...+.....| +++|++||+||.|||+|
T Consensus 82 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 82 DIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 99999999999999977655554555 78999999999999986
No 32
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.79 E-value=2.9e-18 Score=118.59 Aligned_cols=108 Identities=15% Similarity=0.116 Sum_probs=79.0
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCC-----Cc---ccCCCeEE--EEEEeCCHHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSD-----HV---VQNGNSSL--LSFTVTDINSA 128 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~-----~~---~~~~~~~~--~~~~v~dl~~~ 128 (168)
|+.|.|+|+++|++||+++|||++....+.|+.+..+++.+.+...... .. .......| +++.++|++++
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~dv~~~ 81 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSETWVDFDFFGHQLVAHLSPNFNADASDNAVDGHPVPVPHFGLILSEEEFDAL 81 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccCCcccccccCcEEEEEeccCCCcccccCCCCCCccCCceEEEEEeHHHHHHH
Confidence 8999999999999999999999998766667766666666666543211 00 00111223 45567999999
Q ss_pred HHHHHHCCCeEeccceee-----CCeEEEEEECCCCCEEEEEe
Q 040429 129 VTKLMALGAELDGSIKYE-----IHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~~-----~~g~~~~~~DPdGn~iel~e 166 (168)
+++|+++|+++..++... ..++.+||+|||||.|||..
T Consensus 82 ~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 82 AERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred HHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 999999999987554321 12388999999999999964
No 33
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=1.1e-17 Score=115.68 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=83.7
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEec---c---cEEEEEeCCeEEEEEeCCCCCc-----ccCCCeEEEEEEeCCHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCT---L---RWAELQSGPLKLALMQSPSDHV-----VQNGNSSLLSFTVTDINS 127 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~---~~~~~~~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~v~dl~~ 127 (168)
+..|+|+|+++|++||+++|||++.... + .++.+..++..+.+........ ...+...+++|.|+|+++
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~d~d~ 81 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFGDGGVMVGSVRDDYRASSARAGGAGTQGVYVVVDDVDA 81 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEECCEEEEEecCCCcccccccccCCCceEEEEEEECCHHH
Confidence 3579999999999999999999998653 1 1455666666676654432211 122345579999999999
Q ss_pred HHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 128 AVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
++++|+++|+++..++...++| +.++++|||||+|+|.+
T Consensus 82 ~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~ 121 (122)
T cd08355 82 HYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGT 121 (122)
T ss_pred HHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEec
Confidence 9999999999988787766666 88999999999999975
No 34
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.79 E-value=4e-18 Score=135.57 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=99.2
Q ss_pred CCceeeeEEeeecCcceeeecchhccccccc---hhhhccccccccccccccEEEEEeCCHHHHHHHHHhccCCEEEEec
Q 040429 10 APREVRIRVLHSLSGSLVKSSARLSKVHKRD---EVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT 86 (168)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~ 86 (168)
-++.+ .+ .+|+|..+|+.+......... .........+.|...+|+||.|.|+|+++|++||+++|||++....
T Consensus 99 ~g~~~--~~-~DPdG~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~ 175 (303)
T TIGR03211 99 VGRRV--RF-TLPSGHTMELYAEKEYVGELVGGLNPDPWPDPLRGVGARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQV 175 (303)
T ss_pred cceEE--EE-ECCCCCEEEEEEccccccccccccCCcccccccCCcCceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeE
Confidence 34554 33 778999999988766432100 0001111234565678999999999999999999999999986542
Q ss_pred ----cc--EEEE-Ee--CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHH---HHHHHHHCCCeEec-cceeeC-CeEEE
Q 040429 87 ----LR--WAEL-QS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINS---AVTKLMALGAELDG-SIKYEI-HGKVA 152 (168)
Q Consensus 87 ----~~--~~~~-~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~---~~~~l~~~G~~~~~-~~~~~~-~g~~~ 152 (168)
.. ...+ .. +.+.+.+...+ ..+...|++|.|+|+++ .+++|+++|+++.. +.+++. .++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~ 250 (303)
T TIGR03211 176 VLGDGKEQAAAWLSVSNKAHDIAFVGDP-----EPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTI 250 (303)
T ss_pred EcCCCcEEEEEEEEcCCCCcccceecCC-----CCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEE
Confidence 11 2222 12 33445444322 23446789999987555 66789999999764 444554 35899
Q ss_pred EEECCCCCEEEEEe
Q 040429 153 AMRCIDGHMLGLYE 166 (168)
Q Consensus 153 ~~~DPdGn~iel~e 166 (168)
||+|||||+|||+.
T Consensus 251 y~~DPdG~~iEl~~ 264 (303)
T TIGR03211 251 YFFDPSGNRNETFG 264 (303)
T ss_pred EEECCCCCEEEEec
Confidence 99999999999973
No 35
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.79 E-value=3.1e-18 Score=116.67 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=83.4
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEe--CCHHHHHHHHHHCC
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTV--TDINSAVTKLMALG 136 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v--~dl~~~~~~l~~~G 136 (168)
|+.|.|+|+++|++||+++|||++....+....+..++..+.+...+.... ..+...|++|.+ +|+++++++++++|
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~hiaf~v~~~d~~~~~~~l~~~G 79 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSSKEAYFELAGLWICLMEEDSLQG-PERTYTHIAFQIQSEEFDEYTERLKALG 79 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccCceeEEEecCeEEEeccCCCcCC-CCCCccEEEEEcCHHHHHHHHHHHHHcC
Confidence 789999999999999999999999877665555666677777655433221 123445789988 57999999999999
Q ss_pred CeEeccce-eeCCeEEEEEECCCCCEEEEEee
Q 040429 137 AELDGSIK-YEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 137 ~~~~~~~~-~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++..+.. ..++++.+|++|||||+|||++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 80 VEMKPERPRVQGEGRSIYFYDPDGHLLELHAG 111 (113)
T ss_pred CccCCCccccCCCceEEEEECCCCCEEEEEeC
Confidence 99764433 33456899999999999999864
No 36
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.79 E-value=6.2e-18 Score=116.31 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=81.8
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEec--c--cE--EEEEe----CCeEEEEEeCCCC-C-cccCCCeEEEEEEeCC
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCT--L--RW--AELQS----GPLKLALMQSPSD-H-VVQNGNSSLLSFTVTD 124 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~--~~--~~~~~----~~~~i~l~~~~~~-~-~~~~~~~~~~~~~v~d 124 (168)
++|+.|.|+|+++|++||+++|||++.... + .+ +.+.. +++.+.+...... . ........+++|.++|
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~v~d 80 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNWGTEEPYDNGNGFGHLAFAVDD 80 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecCCCCCCcCCCCCeEEEEEEeCC
Confidence 579999999999999999999999987642 1 22 23332 2456666543222 1 1112345689999999
Q ss_pred HHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEE
Q 040429 125 INSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~ 165 (168)
+++++++++++|+.+..++.....++.+||+|||||++||+
T Consensus 81 id~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 81 VYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred HHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 99999999999999887666555558899999999999984
No 37
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.79 E-value=1.1e-17 Score=115.17 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=84.4
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEecc------cEEEEEeCCeEEEEEeCCCC---CcccCCCeEEEEEEeCCHHHHHH
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVCTL------RWAELQSGPLKLALMQSPSD---HVVQNGNSSLLSFTVTDINSAVT 130 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~~~------~~~~~~~~~~~i~l~~~~~~---~~~~~~~~~~~~~~v~dl~~~~~ 130 (168)
+.|.|+|+++|.+||+++|||++..... .++.+..++..+.+...... .....+...+++|.++|++++++
T Consensus 5 ~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~ 84 (122)
T cd07246 5 PYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIGDSVLMLADEFPEHGSPASWGGTPVSLHLYVEDVDATFA 84 (122)
T ss_pred EEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEECCEEEEEecCCcccCCCCCCCCceEEEEEEeCCHHHHHH
Confidence 4689999999999999999999876531 35556667777777653221 11223445689999999999999
Q ss_pred HHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 131 KLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 131 ~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
++.+.|+++..++...++| +.++++|||||.|+|.|.
T Consensus 85 ~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~~ 122 (122)
T cd07246 85 RAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIATH 122 (122)
T ss_pred HHHHCCCeEecCcccccccceEEEEECCCCCEEEEecC
Confidence 9999999988777655555 899999999999999873
No 38
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.79 E-value=5.8e-18 Score=133.75 Aligned_cols=144 Identities=17% Similarity=0.099 Sum_probs=96.6
Q ss_pred eEEeeecCcceeeecchhccccccchhhhc-cccccccccccccEEEEEeCCHHHHHHHHHhccCCEEEEec----c-c-
Q 040429 16 IRVLHSLSGSLVKSSARLSKVHKRDEVRER-ERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT----L-R- 88 (168)
Q Consensus 16 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~----~-~- 88 (168)
+.+ .+|+|..+|++++......+...... .... .....+|+||.|.|+|+++|.+||+++|||++.... + .
T Consensus 103 ~~f-~DPdGn~lEl~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~ 180 (286)
T TIGR03213 103 IKF-TDPGGNPLEIYYGAVEDFEKPFVSPRAVSGF-VTGDQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGV 180 (286)
T ss_pred EEE-ECCCCCEEEEEEcccccCCCCCCCCCCCCcc-ccCCccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCC
Confidence 444 77899999988865433111100000 0000 112368999999999999999999999999987641 1 1
Q ss_pred ---EEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHH---HHHHHHHCCCeEeccceeeCCe-EEEEEECCCC
Q 040429 89 ---WAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINS---AVTKLMALGAELDGSIKYEIHG-KVAAMRCIDG 159 (168)
Q Consensus 89 ---~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~---~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdG 159 (168)
...+.. .++.+++...+. .+..+|++|.|+|+++ ++++|+++|+...++.+++.++ +++|++||||
T Consensus 181 ~~~~~~l~~~~~~~~~~l~~~~~-----~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~r~~~~~~~~~y~~DP~G 255 (286)
T TIGR03213 181 TVRPYFLHCNERHHSLAFAAGPS-----EKRLNHLMLEVDTLDDVGLALDRVDADGIVASTLGRHTNDHMVSFYVATPSG 255 (286)
T ss_pred cceEEEEEECCCcceEEEecCCC-----CCceEEEEEEcCCHHHHHHHHHHHHHCCCEEecCCcCCCCCeEEEEEECCCC
Confidence 122222 455666654331 2345689999988777 7889999999544555555544 8999999999
Q ss_pred CEEEEEe
Q 040429 160 HMLGLYE 166 (168)
Q Consensus 160 n~iel~e 166 (168)
|+||+..
T Consensus 256 ~~iE~~~ 262 (286)
T TIGR03213 256 WLVEYGW 262 (286)
T ss_pred cEEEeec
Confidence 9999975
No 39
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.79 E-value=7.3e-18 Score=115.30 Aligned_cols=107 Identities=22% Similarity=0.269 Sum_probs=84.2
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeC---CeEEEEEeCCCCCcccCCCeEEEEEEeC---CHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSG---PLKLALMQSPSDHVVQNGNSSLLSFTVT---DINSA 128 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~~~ 128 (168)
++++|+.|.|+|++++++||+++|||++....+..+.+..+ ++.+.+...+. ....|++|.+. +++++
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~h~~~~v~~~~~v~~~ 74 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDAGSVYLRCSEDDHHSLVLTEGDE------PGVDALGFEVASEEDLEAL 74 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecCCeEEEecCCCCcEEEEEEeCCC------CCceeEEEEcCCHHHHHHH
Confidence 37899999999999999999999999999876655555543 45566655432 23457999996 68889
Q ss_pred HHHHHHCCCeEeccceeeC-CeEEEEEECCCCCEEEEEee
Q 040429 129 VTKLMALGAELDGSIKYEI-HGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~~~-~g~~~~~~DPdGn~iel~e~ 167 (168)
.++++++|+++...+...+ +++.+||.||+||.+|++..
T Consensus 75 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 75 AAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred HHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 9999999999876654344 45899999999999999864
No 40
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.79 E-value=6.1e-18 Score=123.45 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=80.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe----cc--------------------cEEEEEe-CCeEEEEEeCCCCCc
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC----TL--------------------RWAELQS-GPLKLALMQSPSDHV 109 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~----~~--------------------~~~~~~~-~~~~i~l~~~~~~~~ 109 (168)
.+++|+.|.|+|+++|++||+++|||++... .+ ..+.+.. ++..|.|...+....
T Consensus 3 ~~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~~~~ 82 (162)
T TIGR03645 3 RTFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKNQEN 82 (162)
T ss_pred ceEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccCCCC
Confidence 5799999999999999999999999987531 00 1122222 345677776543221
Q ss_pred cc------CCCeEEEEEEeCCHHHHHHHHHHCCCeEec-ccee---eC-CeEEEEEECCCCCEEEEEee
Q 040429 110 VQ------NGNSSLLSFTVTDINSAVTKLMALGAELDG-SIKY---EI-HGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 110 ~~------~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~-~~~~---~~-~g~~~~~~DPdGn~iel~e~ 167 (168)
+. ..+..|++|.++|+++++++|+++|+.+.. ++.. +. ..+++||+|||||.|||+++
T Consensus 83 ~~~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 151 (162)
T TIGR03645 83 PEDNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMEDPFGNILEIYSH 151 (162)
T ss_pred CCcccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEECCCCCEEEEEEc
Confidence 11 134568999999999999999999987543 2221 11 12789999999999999986
No 41
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.78 E-value=1.3e-17 Score=116.14 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=85.1
Q ss_pred cccEEEEEeCCHHHHHHHHHhcc---CCEEEEecc---cEEEEEeCCeEEEEEeCCCCCc----ccCCCeEEEEEEeC--
Q 040429 56 SFRWILQLHKDVPKAARFYSEGL---DFTVNVCTL---RWAELQSGPLKLALMQSPSDHV----VQNGNSSLLSFTVT-- 123 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vL---Gf~~~~~~~---~~~~~~~~~~~i~l~~~~~~~~----~~~~~~~~~~~~v~-- 123 (168)
+++|+.|.|+|++++++||+++| ||++....+ .|... .++..+.+...+.... .......|++|.++
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~~~~~~~~-~~~~~i~l~~~~~~~~~~~~~~~~g~~hia~~v~~~ 79 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWEDGRSWRAG-DGGTYLVLQQADGESAGRHDRRNPGLHHLAFRAPSR 79 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeeccCceEEec-CCceEEEEEecccCCCcccccCCcCeeEEEEEcCCH
Confidence 47999999999999999999999 999887643 23322 3677788876554321 12233467999996
Q ss_pred -CHHHHHHHHHHCCCeEecccee----eCCeEEEEEECCCCCEEEEEee
Q 040429 124 -DINSAVTKLMALGAELDGSIKY----EIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 -dl~~~~~~l~~~G~~~~~~~~~----~~~g~~~~~~DPdGn~iel~e~ 167 (168)
|+++++++|+++|+.+..++.. ..+++.+||+|||||++||+.|
T Consensus 80 ~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 80 EAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred HHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 5889999999999998876553 2344899999999999999876
No 42
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.78 E-value=3.9e-18 Score=118.43 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=83.3
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEec---c---cEEEEEeCCeEEEEEeCCCCCc-------ccCCCeEEEEEEe
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCT---L---RWAELQSGPLKLALMQSPSDHV-------VQNGNSSLLSFTV 122 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~---~~~~~~~~~~~i~l~~~~~~~~-------~~~~~~~~~~~~v 122 (168)
+++|+.|.|+|+++|++||+++|||++.... + ..+.+..++..+.|........ .......+++|.+
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~g~~~i~~~v 80 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEPLGEDSPIAKFLEKNGGGIHHIAIEV 80 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEecCCCCChHHHHHhcCCCceEEEEEEc
Confidence 5899999999999999999999999987542 1 2333445667777765322110 1123445899999
Q ss_pred CCHHHHHHHHHHCCCeEec-cceeeCCe-EEEEE--ECCCCCEEEEEe
Q 040429 123 TDINSAVTKLMALGAELDG-SIKYEIHG-KVAAM--RCIDGHMLGLYE 166 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~~-~~~~~~~g-~~~~~--~DPdGn~iel~e 166 (168)
+|+++++++|.++|+++.. ++..+++| +.+|+ +|||||.||++|
T Consensus 81 ~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 81 DDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred CCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 9999999999999999875 35666666 55666 799999999986
No 43
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.78 E-value=5.2e-18 Score=117.12 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=83.3
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEe---CCHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTV---TDINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v---~dl~~ 127 (168)
.+++|+.|.|+|++++++||+++|||++....+.++.+.. .++.+.+.+.+ .+...+++|.+ +|+++
T Consensus 3 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~hi~~~v~~~~dv~~ 76 (121)
T cd07266 3 LRLGHVELRVTDLEKSREFYVDVLGLVETEEDDDRIYLRGLEEFIHHSLVLTKAP------VAGLGHIAFRVRSEEDLDK 76 (121)
T ss_pred ceeeEEEEEcCCHHHHHHHHHhccCCEEeccCCCeEEEEecCCCceEEEEEeeCC------CCceeEEEEECCCHHHHHH
Confidence 5899999999999999999999999999877666666542 23556665432 12355788988 57888
Q ss_pred HHHHHHHCCCeEecc-ceeeCC-eEEEEEECCCCCEEEEEee
Q 040429 128 AVTKLMALGAELDGS-IKYEIH-GKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~-~~~~~~-g~~~~~~DPdGn~iel~e~ 167 (168)
++++++++|+++... ....++ ++.+|+.|||||+||++.+
T Consensus 77 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 77 AEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred HHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 999999999987643 334444 4889999999999999865
No 44
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.78 E-value=9.4e-18 Score=115.57 Aligned_cols=111 Identities=19% Similarity=0.259 Sum_probs=83.8
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEe-cccEEEEEeCC-eEEEEEeCCCCC-------cccCCCeEEEEEEe--CCH
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVC-TLRWAELQSGP-LKLALMQSPSDH-------VVQNGNSSLLSFTV--TDI 125 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~-~~~~~~~~~~~-~~i~l~~~~~~~-------~~~~~~~~~~~~~v--~dl 125 (168)
+.++.|.|+|+++|++||+++|||++... .+.++.+..++ ..+.+....... ........+++|.+ +|+
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~dl 80 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKEDRRLAFFWVGGRGMLLLFDPGATSTPGGEIPPHGGSGPGHFAFAIPAEEL 80 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecCCCceEEEEcCCCcEEEEEecCCcccccCCCCCCCCCCccEEEEEcCHHHH
Confidence 35789999999999999999999999884 45666666654 555555432111 11122345688887 689
Q ss_pred HHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 126 NSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 126 ~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++++.++|+++..++...++++.+||.|||||.|||+++
T Consensus 81 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 81 AEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred HHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 999999999999887666545566899999999999999975
No 45
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.78 E-value=1.3e-17 Score=117.70 Aligned_cols=109 Identities=19% Similarity=0.176 Sum_probs=82.5
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEeccc-EEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR-WAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAV 129 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~-~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~ 129 (168)
.+++|+.|.|+|+++|++||+++|||++...... .+.+.. +++.+++...+.. .+...|++|.|+|++++.
T Consensus 2 ~~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~----~~g~~hiaf~v~d~~~~~ 77 (134)
T cd08360 2 RRLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFKGRGAFLRAAGGGDHHNLFLIKTPAP----MAGFHHAAFEVGDIDEVM 77 (134)
T ss_pred ceeeEEEEEcCCHHHHHHHHHHhcCCEEEEEecCcEEEEECCCCCCCcEEEEecCCCC----CCcceEEEEEeCCHHHHH
Confidence 5799999999999999999999999998766432 333332 3467777654431 245668999999999887
Q ss_pred H---HHHHCCCeEec-cceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 130 T---KLMALGAELDG-SIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 130 ~---~l~~~G~~~~~-~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
+ +|.++|+++.. +.++..++ +++||+||+||.|||+..
T Consensus 78 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~ 120 (134)
T cd08360 78 LGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGAD 120 (134)
T ss_pred HHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEcc
Confidence 4 99999998753 34444444 679999999999999853
No 46
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.78 E-value=2e-17 Score=116.23 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=84.0
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecc--cEEEEEeC---CeEEEEEeCCCCC-cccCCCeEEEEEEeCCHH---
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTL--RWAELQSG---PLKLALMQSPSDH-VVQNGNSSLLSFTVTDIN--- 126 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~--~~~~~~~~---~~~i~l~~~~~~~-~~~~~~~~~~~~~v~dl~--- 126 (168)
+|+|+.|.|+|++++++||+++|||++....+ .+..+..+ ++.+.+...+... ....+...|++|.|+|++
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~h~~f~v~~~~~v~ 80 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPLGGLVFLSRDPDEHHQIALITGRPAAPPPGPAGLNHIAFEVDSLDDLR 80 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccCCcEEEEEecCCCceEEEEEecCCCCCCCCCCCceEEEEEeCCHHHHH
Confidence 58899999999999999999999999887655 55555443 5677777654331 122234557999998766
Q ss_pred HHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 127 SAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++++|.++|+++..+... ..++.+||+|||||.|||+..
T Consensus 81 ~~~~~l~~~G~~~~~~~~~-~~~~~~~~~DP~G~~ie~~~~ 120 (134)
T cd08348 81 DLYERLRAAGITPVWPVDH-GNAWSIYFRDPDGNRLELFVD 120 (134)
T ss_pred HHHHHHHHCCCCccccCCC-CceeEEEEECCCCCEEEEEEc
Confidence 5778999999987655433 235889999999999999864
No 47
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.78 E-value=1.2e-17 Score=114.48 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=78.9
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeC--CeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSG--PLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKL 132 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l 132 (168)
.+++|+.|.|+|+++|++||++ |||+.....+..+.+..+ .+.+.+.. ... .+...+++|.|+|.+++.+.+
T Consensus 2 ~~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~af~v~~~~~~~~~~ 75 (113)
T cd07267 2 TDIAHVRFEHPDLDKAERFLTD-FGLEVAARTDDELYYRGYGTDPFVYVAR-KGE----KARFVGAAFEAASRADLEKAA 75 (113)
T ss_pred cEEEEEEEccCCHHHHHHHHHH-cCCEEEEecCCeEEEecCCCccEEEEcc-cCC----cCcccEEEEEECCHHHHHHHH
Confidence 4789999999999999999999 999987765545545432 23333222 111 123457999999999999999
Q ss_pred HHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 133 MALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 133 ~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
+++|+.....+...++++++||.|||||.|||+-
T Consensus 76 ~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 76 ALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVY 109 (113)
T ss_pred HcCCCeeecCCCCCCCceEEEEECCCCCEEEEEe
Confidence 9999986644333344589999999999999974
No 48
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.77 E-value=1.5e-17 Score=119.22 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=81.7
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEeccc-EEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHH--
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR-WAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAV-- 129 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~-~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~-- 129 (168)
.+++|+.|.|+|+++|++||+++|||++...... ...+.. +++.+++...+ .+...|++|.++|++++.
T Consensus 3 ~~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~l~~~~~~~~~~l~~~~------~~~~~hiaf~v~d~~~l~~~ 76 (144)
T cd07239 3 VKISHVVLNSPDVDKTVAFYEDVLGFRVSDWLGDQMAFLRCNSDHHSIAIARGP------HPSLNHVAFEMPSIDEVMRG 76 (144)
T ss_pred ceeeEEEEECCCHHHHHHHHHhcCCCEEEEeeCCeEEEEECCCCcceEEEccCC------CCceEEEEEECCCHHHHHHH
Confidence 6899999999999999999999999998765432 222333 35667765432 233557999999988886
Q ss_pred -HHHHHCCCeEeccc-eeeCCe-EEEEEECCCCCEEEEEee
Q 040429 130 -TKLMALGAELDGSI-KYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 130 -~~l~~~G~~~~~~~-~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
++|+++|+++..++ ++++++ +++||+||+||.|||++.
T Consensus 77 ~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~ 117 (144)
T cd07239 77 IGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSE 117 (144)
T ss_pred HHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccC
Confidence 79999999876443 345544 788999999999999875
No 49
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.77 E-value=1.5e-17 Score=115.10 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=78.7
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEe-cccEEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeC---CHHHHH
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVC-TLRWAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVT---DINSAV 129 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~-~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~~~~ 129 (168)
++.|+.|.|+|+++|++||+++|||++... ....+.+.. .++.+++...+. ....+++|.++ |+++++
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~f~v~~~~dl~~~~ 75 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPEDGALYLRMDDRAWRIAVHPGEA------DDLAYAGWEVADEAALDALA 75 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCCCCeEEEEccCCceEEEEEeCCC------CceeEEEEEECCHHHHHHHH
Confidence 688999999999999999999999998766 333333433 356677765432 22346889886 588889
Q ss_pred HHHHHCCCeEeccc-e--eeC-CeEEEEEECCCCCEEEEEe
Q 040429 130 TKLMALGAELDGSI-K--YEI-HGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 130 ~~l~~~G~~~~~~~-~--~~~-~g~~~~~~DPdGn~iel~e 166 (168)
++|+++|+++...+ . ... .++++||+|||||.|||+-
T Consensus 76 ~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 116 (120)
T cd07252 76 ARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFW 116 (120)
T ss_pred HHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEe
Confidence 99999999987432 2 122 2379999999999999974
No 50
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.77 E-value=3e-17 Score=118.06 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=80.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc----c--EEEEEeC--C--eEEEEEeCCCCCc-ccCCCeEEEEEEeC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL----R--WAELQSG--P--LKLALMQSPSDHV-VQNGNSSLLSFTVT 123 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~----~--~~~~~~~--~--~~i~l~~~~~~~~-~~~~~~~~~~~~v~ 123 (168)
.+++|+.|.|+|+++|++||+++|||++..... . +..+..+ + ..+.+........ .......|++|.++
T Consensus 16 ~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~hi~f~v~ 95 (150)
T TIGR00068 16 RRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDETSAAVIELTHNWGTEKYDLGNGFGHIAIGVD 95 (150)
T ss_pred ceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCCCccEEEEeecCCCCcccCCCceeEEEEecC
Confidence 789999999999999999999999999866421 1 2222221 1 2233322211111 11234557999999
Q ss_pred CHHHHHHHHHHCCCeEeccce-ee-CCeEEEEEECCCCCEEEEEee
Q 040429 124 DINSAVTKLMALGAELDGSIK-YE-IHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~-~~-~~g~~~~~~DPdGn~iel~e~ 167 (168)
|+++++++|.++|+++..++. .. ...+.+||+|||||+|||+++
T Consensus 96 dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~ 141 (150)
T TIGR00068 96 DVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQR 141 (150)
T ss_pred CHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEC
Confidence 999999999999998876553 22 223688999999999999986
No 51
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.77 E-value=4.4e-18 Score=123.04 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=76.9
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEec--c----c-EEEEEeC-------CeEEEEEeCCCCCcccCCCeEEEEEE
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCT--L----R-WAELQSG-------PLKLALMQSPSDHVVQNGNSSLLSFT 121 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~----~-~~~~~~~-------~~~i~l~~~~~~~~~~~~~~~~~~~~ 121 (168)
+|+||.|.|+|+++|++||+++|||++.... + . .+.+..+ .+.+++...+ .+...|++|.
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~------~~g~~Hiaf~ 74 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEYVDHHTLALAQGP------ESGVHHAAFE 74 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCcccchHHHHhcCC------CCceeEEEEE
Confidence 5899999999999999999999999987541 1 1 2222221 1233332211 2446789999
Q ss_pred eCCHHHHH---HHHHHCCCeEe-ccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 122 VTDINSAV---TKLMALGAELD-GSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 122 v~dl~~~~---~~l~~~G~~~~-~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
|+|++++. ++|+++|+++. ++.++..+. .++|++|||||.|||+..
T Consensus 75 v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~ 125 (153)
T cd07257 75 VHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTD 125 (153)
T ss_pred cCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcC
Confidence 99999987 89999999976 444444333 678999999999999853
No 52
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.2e-17 Score=115.99 Aligned_cols=108 Identities=19% Similarity=0.202 Sum_probs=80.2
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEEEEe--cccEEEEEeC-CeEEEEEeCCCC------Cc--ccCCCeEEEEEEeC---
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTVNVC--TLRWAELQSG-PLKLALMQSPSD------HV--VQNGNSSLLSFTVT--- 123 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~~~~--~~~~~~~~~~-~~~i~l~~~~~~------~~--~~~~~~~~~~~~v~--- 123 (168)
.++.|.|+|+++|++||++ |||++... .+..+.+..+ +..+.+...+.. .. +..+...+++|.++
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~l~f~v~~~~ 80 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTA-LGFEFNPQFSDEKAACMVISDNIFVMLLTEDFFQTFTPKPIADTKKSTEVLISLSADSRE 80 (124)
T ss_pred EEEEeecCCHHHHHHHHHH-CCCEEccccCCCCeEEEEECCceEEEEEcHHHHhhccCCCcccCCCCCeEEEEEeCCCHH
Confidence 5789999999999999987 99997643 2344555443 456666543210 10 12334457999997
Q ss_pred CHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 124 DINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
|+++++++++++|+.+..++...++++.+||+|||||+|||+.
T Consensus 81 ~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 81 EVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred HHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 5888999999999999877776666788899999999999973
No 53
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=2.4e-17 Score=114.07 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=82.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhc---cCCEEEEec-ccEEEEEeC--CeEEEEEeCCCCCcccCCCeEEEEEEeCC---HHH
Q 040429 57 FRWILQLHKDVPKAARFYSEG---LDFTVNVCT-LRWAELQSG--PLKLALMQSPSDHVVQNGNSSLLSFTVTD---INS 127 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~v---LGf~~~~~~-~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~v~d---l~~ 127 (168)
++|+.|.|+|+++|++||+++ ||++..... +.++.+..+ ++.+.+...........+...|++|.+++ +++
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~hi~f~v~~~~~v~~ 80 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGPGAVGYGKGGGGPDFWVTKPFDGEPATAGNGTHVAFAAPSREAVDA 80 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeecCCceeEeccCCCCceEEEeccccCCCCCCCCceEEEEECCCHHHHHH
Confidence 579999999999999999998 699988765 567666553 67777766433222222334589999986 788
Q ss_pred HHHHHHHCCCeEeccceee-C---CeEEEEEECCCCCEEEEE
Q 040429 128 AVTKLMALGAELDGSIKYE-I---HGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~-~---~g~~~~~~DPdGn~iel~ 165 (168)
++++++++|+.+...+... . +.+.+||+|||||.|||+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 81 FHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred HHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 8999999999877554432 2 226789999999999997
No 54
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=4.6e-17 Score=112.30 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=79.5
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeC--CeEEEEEeCCCCCcccCCCeEEEEEEeCC---HHHHHHHH
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSG--PLKLALMQSPSDHVVQNGNSSLLSFTVTD---INSAVTKL 132 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~--~~~i~l~~~~~~~~~~~~~~~~~~~~v~d---l~~~~~~l 132 (168)
.|+.|.|+|+++|.+||+++||++.....+.+..+..+ ...+.+...+.. . .+...+++|.+++ ++++++++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~h~~f~v~~~~dl~~~~~~l 79 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRDDYAKFLLEDPRLNFVLNERPGA--P-GGGLNHLGVQVDSAEEVAEAKARA 79 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccCCeeEEEecCCceEEEEecCCCC--C-CCCeeEEEEEeCCHHHHHHHHHHH
Confidence 48999999999999999999999987765555555443 344444433221 1 1345579999977 78899999
Q ss_pred HHCCCeEeccceeeC---CeEEEEEECCCCCEEEEEee
Q 040429 133 MALGAELDGSIKYEI---HGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 133 ~~~G~~~~~~~~~~~---~g~~~~~~DPdGn~iel~e~ 167 (168)
.++|+++..++.... .++.+|++|||||.|||++.
T Consensus 80 ~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 80 EAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEe
Confidence 999999876554332 24789999999999999874
No 55
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.76 E-value=2.3e-17 Score=113.52 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=80.4
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCC---eEEEEEeCCCCCcccCCCeEEEEEEe---CCHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGP---LKLALMQSPSDHVVQNGNSSLLSFTV---TDINSA 128 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~---~~i~l~~~~~~~~~~~~~~~~~~~~v---~dl~~~ 128 (168)
.+|+|+.|.|+|++++++||+++|||++....++++.+..++ +.+.+...+. ....+++|.+ ++++++
T Consensus 2 ~~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~l~~~ 75 (120)
T cd08362 2 TALRGVGLGVPDLAAAAAFYREVWGLSVVAEDDGIVYLRATGSEHHILRLRRSDR------NRLDVVSFSVASRADVDAL 75 (120)
T ss_pred ceeeEEEEecCCHHHHHHHHHhCcCcEEEEecCCEEEEECCCCccEEEEeccCCC------CCCceEEEEeCCHHHHHHH
Confidence 478999999999999999999999999887666666655432 2223222111 1234689998 578999
Q ss_pred HHHHHHCCCeEeccce--e-eCCeEEEEEECCCCCEEEEEee
Q 040429 129 VTKLMALGAELDGSIK--Y-EIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~--~-~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+++|+++|+++..++. . .++++.++|.||+||.+||+.+
T Consensus 76 ~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 76 ARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred HHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 9999999999875542 2 3345889999999999999875
No 56
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.76 E-value=3.5e-18 Score=117.86 Aligned_cols=109 Identities=26% Similarity=0.319 Sum_probs=77.6
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecc--------cEEEEEeC--CeEEEEEeCCCCCcccC----CCeEEEEEE
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTL--------RWAELQSG--PLKLALMQSPSDHVVQN----GNSSLLSFT 121 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~--------~~~~~~~~--~~~i~l~~~~~~~~~~~----~~~~~~~~~ 121 (168)
+|+|+.|.|+|++++++||+++|||++..... ....+..+ .+.+.....+....... ....++++.
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGEGHIELFLNPSPPPRASGHSFPEHGGHHIAFL 80 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTSSCEEEEEEESSSSSSEEEHHHSHTSEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccccceeeeeeccccccccccccccccceeEEEE
Confidence 58999999999999999999999999998754 22333333 45555555444322221 122345554
Q ss_pred e---CCHHHHHHHHHHCCCeEeccceeeCCe--EEEEEECCCCCEEEE
Q 040429 122 V---TDINSAVTKLMALGAELDGSIKYEIHG--KVAAMRCIDGHMLGL 164 (168)
Q Consensus 122 v---~dl~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~DPdGn~iel 164 (168)
+ +|+++++++|++.|+++..++.....+ ..+|++|||||.|||
T Consensus 81 ~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 81 AFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp ESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred eccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 4 678888999999999988777644444 556899999999997
No 57
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.76 E-value=6.9e-17 Score=120.19 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=84.2
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec---c-cE-EEE-Ee-------------------CCeEEEEEeCCCCCc
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT---L-RW-AEL-QS-------------------GPLKLALMQSPSDHV 109 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~-~~-~~~-~~-------------------~~~~i~l~~~~~~~~ 109 (168)
-++.|+.|.|+|+++|++||+++|||++..+. + .+ ..+ .. +...|.|........
T Consensus 26 ~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~l~~~~~~lEL~~~~~~~~ 105 (185)
T PLN03042 26 YIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPPERTVWTFGRKATIELTHNWGTES 105 (185)
T ss_pred cEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchhhcccccccCCCEEEEEEcCCCcc
Confidence 78999999999999999999999999987662 1 22 112 11 234677765432110
Q ss_pred ----------c-cCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 110 ----------V-QNGNSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 110 ----------~-~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
. ...+..|++|.|+|+++++++|+++|+.+...+..+.+.+.+|++|||||.|||++.
T Consensus 106 ~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~DPdG~~IEl~e~ 174 (185)
T PLN03042 106 DPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIKDPDGYWIEIFDL 174 (185)
T ss_pred cccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEECCCCCEEEEEEC
Confidence 0 112456899999999999999999999987655544345678889999999999985
No 58
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.75 E-value=3.6e-17 Score=119.82 Aligned_cols=113 Identities=16% Similarity=0.223 Sum_probs=81.3
Q ss_pred cccccccEEEEEeCCHHHHHHHHHhccCCEEEEec--c------cEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeC
Q 040429 52 MAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT--L------RWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVT 123 (168)
Q Consensus 52 m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~------~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~ 123 (168)
|...+|+|+.|.|+|+++|++||+++|||++.... + .|.......+.+.+...+.. ..+...|++|.++
T Consensus 2 ~~i~~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~---~~~~~~hiaf~v~ 78 (166)
T cd09014 2 VGVRRLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNKVHDVAYTRDPAG---ARGRLHHLAYALD 78 (166)
T ss_pred CCcceeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCCceeEEEecCCCC---CCCCceEEEEECC
Confidence 55678999999999999999999999999987542 1 12222223456665443221 2344568999997
Q ss_pred CHH---HHHHHHHHCCCeEeccc-eeeCCe-EEEEEECCCCCEEEEEee
Q 040429 124 DIN---SAVTKLMALGAELDGSI-KYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 dl~---~~~~~l~~~G~~~~~~~-~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
|.+ +++++|+++|+++...+ .++... .++|++|||||+|||++.
T Consensus 79 ~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 79 TREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred CHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 654 77889999999976433 344434 579999999999999875
No 59
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.75 E-value=5.2e-17 Score=112.06 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=81.2
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEeccc-------EEEEEe----CCeEEEEEeCCCCCc---ccCCCeEEEEEE
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR-------WAELQS----GPLKLALMQSPSDHV---VQNGNSSLLSFT 121 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~-------~~~~~~----~~~~i~l~~~~~~~~---~~~~~~~~~~~~ 121 (168)
+++|+.|.|+|+++|++||+++|||++...... +..+.. +++.+.|...+.... ...+...|++|.
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~hi~f~ 80 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPDAGPKGRRGPGQIHHIAFS 80 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCCCCCCCCCCCCcEEEEEEE
Confidence 478999999999999999999999998765321 222322 456777776543321 123345689999
Q ss_pred eC---CHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEE
Q 040429 122 VT---DINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 122 v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~ 165 (168)
+. ++++++++++++|+++..++.. .+++.+||+|||||+|||+
T Consensus 81 v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 81 VPSEASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred cCCHHHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 97 5799999999999987654433 4558999999999999984
No 60
>PRK06724 hypothetical protein; Provisional
Probab=99.75 E-value=7.3e-17 Score=113.51 Aligned_cols=107 Identities=8% Similarity=0.097 Sum_probs=76.7
Q ss_pred ccccEEEEEeCCHHHHHHHHHhcc---CCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEe---CCHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGL---DFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTV---TDINSA 128 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vL---Gf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v---~dl~~~ 128 (168)
.+++|+.|.|+|+++|++||+++| |++.... ..+..+...+.|...... ........|++|.| ++++++
T Consensus 6 ~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~----~~~~~g~~~l~l~~~~~~-~~~~~g~~h~af~v~~~~dvd~~ 80 (128)
T PRK06724 6 AGIHHIEFWVANLEESISFYDMLFSIIGWRKLNE----VAYSTGESEIYFKEVDEE-IVRTLGPRHICYQAINRKVVDEV 80 (128)
T ss_pred cccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeee----EeeeCCCeeEEEecCCcc-ccCCCCceeEEEecCChHHHHHH
Confidence 579999999999999999999966 6665421 223334445555432221 11122346899987 889999
Q ss_pred HHHHHHCCCeEecccee-e--CCe-EEEEEECCCCCEEEEEe
Q 040429 129 VTKLMALGAELDGSIKY-E--IHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~-~--~~g-~~~~~~DPdGn~iel~e 166 (168)
+++|+++|+++..++.. . .+| +.+||+|||||.||+..
T Consensus 81 ~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~ 122 (128)
T PRK06724 81 AEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAY 122 (128)
T ss_pred HHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEe
Confidence 99999999998655432 2 245 78999999999999875
No 61
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.75 E-value=3.3e-17 Score=119.43 Aligned_cols=107 Identities=23% Similarity=0.273 Sum_probs=77.4
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc---c--EEEEEe---CCeEEEEEeCCCCCcccCCCeEEEEEEeCC--
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL---R--WAELQS---GPLKLALMQSPSDHVVQNGNSSLLSFTVTD-- 124 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~---~--~~~~~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~v~d-- 124 (168)
++|+|+.|.|+|+++|++||+++|||++..... . +..+.. ..+.+.+...+. ....|++|.++|
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~~~~i~l~~~~~------~~~~Hiaf~v~~~~ 75 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGGVHDTALTGGNG------PRLHHVAFWVPEPH 75 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCCcceEEEecCCC------CceeEEEEEcCCHH
Confidence 689999999999999999999999999875421 1 223321 355666554321 234579999976
Q ss_pred -HHHHHHHHHHCCCeE--e-ccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 125 -INSAVTKLMALGAEL--D-GSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 125 -l~~~~~~l~~~G~~~--~-~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
+++.+++|+++|+.. . ++..++.++ +++||+|||||.|||++.
T Consensus 76 ~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~ 123 (161)
T cd07256 76 NIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTG 123 (161)
T ss_pred HHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeec
Confidence 777788999999863 2 333444444 789999999999999853
No 62
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=5.2e-17 Score=112.47 Aligned_cols=110 Identities=24% Similarity=0.237 Sum_probs=84.6
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEeccc-------EEEEEeCCeEEEEEeCCCCCc-------ccCCCeEEEEEEe
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTLR-------WAELQSGPLKLALMQSPSDHV-------VQNGNSSLLSFTV 122 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~-------~~~~~~~~~~i~l~~~~~~~~-------~~~~~~~~~~~~v 122 (168)
++|+.|.|+|++++++||+++|||+....... ++.+..++..+.+.+...... .......|++|.|
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~g~~h~~f~v 80 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLGNVQIELIEPLDDDSPIAKFLEKRGEGLHHIAFEV 80 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcCCEEEEEEEECCCCCcHHHHHhcCCCceEEEEEEe
Confidence 57999999999999999999999999775321 455566788888886433211 1123345799999
Q ss_pred CCHHHHHHHHHHCCCeEeccce-eeCCeEEEEEECCC---CCEEEEEe
Q 040429 123 TDINSAVTKLMALGAELDGSIK-YEIHGKVAAMRCID---GHMLGLYE 166 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~~~~~-~~~~g~~~~~~DPd---Gn~iel~e 166 (168)
+|+++++++++++|+++..++. ...+|+.+++.||+ ||+|||+|
T Consensus 81 ~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 81 DDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred CCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 9999999999999999887765 66667555555555 99999986
No 63
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.74 E-value=1.4e-16 Score=113.81 Aligned_cols=103 Identities=15% Similarity=0.078 Sum_probs=76.7
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEEEEecc-cEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeCCH---HHHH
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTVNVCTL-RWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVTDI---NSAV 129 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~-~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl---~~~~ 129 (168)
.||.|.|+|+++|++||+++|||++..... ..+.+.. .++.+.+... ..+...|++|.|+|+ ++++
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~~~~~~l~~~~~~~~h~~~~~~~------~~~gl~Hiaf~v~~~~~v~~~~ 74 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIEDRIVFMRCHPNPFHHTFAVGPA------SSSHFHHVNFMVTDIDDIGKAL 74 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeCCEEEEEEcCCCCCcceeeeccC------CCCceEEEEEECCCHHHHHHHH
Confidence 489999999999999999999999887643 3333332 1344443221 234567899999765 4668
Q ss_pred HHHHHCCCeEe-ccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 130 TKLMALGAELD-GSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 130 ~~l~~~G~~~~-~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
++|+++|+++. ++.+++.++ +++||+|||||.|||.-
T Consensus 75 ~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~ 113 (141)
T cd07258 75 YRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSF 113 (141)
T ss_pred HHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEe
Confidence 89999999876 455556555 88999999999999974
No 64
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.74 E-value=1.2e-16 Score=115.61 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=80.2
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec--------c-cEEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT--------L-RWAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVT 123 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--------~-~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~ 123 (168)
.+|+|+.|.|+|++++++||+++|||++.... . ..+.+.. .++.+.+...+. .+...|++|.|+
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-----~~g~~Hiaf~V~ 82 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEGPG-----PKRIHHLMLEVT 82 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcCCC-----CceeEEEEEEcC
Confidence 68999999999999999999999999986531 1 2333333 345566654332 234568999997
Q ss_pred CHH---HHHHHHHHCCCeEeccc-eeeCCe-EEEEEECCCCCEEEEEee
Q 040429 124 DIN---SAVTKLMALGAELDGSI-KYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 dl~---~~~~~l~~~G~~~~~~~-~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
|++ +++++|+++|+++..++ +++.++ +.+|++|||||.|||+..
T Consensus 83 d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 83 SLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred CHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 765 57999999999987544 344434 889999999999999753
No 65
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.74 E-value=8.1e-17 Score=127.45 Aligned_cols=147 Identities=23% Similarity=0.279 Sum_probs=97.5
Q ss_pred CCCCceeeeEEeeecCcceeeecchhccccccchhhhccccccccccccccEEEEEeCCHHHHHHHHHhccCCEEEEecc
Q 040429 8 PWAPREVRIRVLHSLSGSLVKSSARLSKVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL 87 (168)
Q Consensus 8 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~ 87 (168)
|..++.+.+ .+|+|..+++......+.... .. ....+.+...+++|+.|.|+|+++|++||+++|||++.....
T Consensus 94 ~~~~~~~~~---~DPdG~~iEl~~~~~~~~~~~--~~-~~~~~~~~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~ 167 (294)
T TIGR02295 94 GGQPEALRV---EDPFGYPIEFYFEMEKVERLL--RR-YHRHRGVSPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTE 167 (294)
T ss_pred CCCceEEEE---ECCCCCEEEEEEchhhccccc--cc-ccccCCccceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEec
Confidence 344444433 668899999887665432100 00 001123344789999999999999999999999999876521
Q ss_pred ----c-EEEEE---eCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHH---HHHHHHHHCCCe--Ee-ccceeeCCe-EEE
Q 040429 88 ----R-WAELQ---SGPLKLALMQSPSDHVVQNGNSSLLSFTVTDIN---SAVTKLMALGAE--LD-GSIKYEIHG-KVA 152 (168)
Q Consensus 88 ----~-~~~~~---~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~---~~~~~l~~~G~~--~~-~~~~~~~~g-~~~ 152 (168)
. +..+. ..++.+++...+ .+...|++|.|+|.+ +.+++|+++|++ +. ++.+++.++ +++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~ 241 (294)
T TIGR02295 168 DDEGNLAAAWLHRKGGVHDIALTNGN------GPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFL 241 (294)
T ss_pred cCCCcEEEEEEecCCCcCceEeecCC------CCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEE
Confidence 1 23332 234566654321 134568999999855 457889999987 43 444455444 789
Q ss_pred EEECCCCCEEEEEe
Q 040429 153 AMRCIDGHMLGLYE 166 (168)
Q Consensus 153 ~~~DPdGn~iel~e 166 (168)
|++||+||+|||+.
T Consensus 242 y~~DP~G~~iEl~~ 255 (294)
T TIGR02295 242 YLRDPDGHRIELYT 255 (294)
T ss_pred EEECCCCCEEEEEe
Confidence 99999999999975
No 66
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=110.93 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=88.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec----ccEEEEEeCC-eEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT----LRWAELQSGP-LKLALMQSPSDHVVQNGNSSLLSFTVTDINSAV 129 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~----~~~~~~~~~~-~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~ 129 (168)
..+.|..|+++|++++++||+++||+++.+.. ..+..+..++ .....+.......+. +....+.|.|+|+++..
T Consensus 8 ~~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~y~~f~~~~~~~gG~l~~~~~~~p~-~~~~~iy~~v~did~~l 86 (127)
T COG3324 8 GTIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMRYAVFPADGAGAGGGLMARPGSPPG-GGGWVIYFAVDDIDATL 86 (127)
T ss_pred CccEEEeeecCCHHHHHHHHHHhhCceecccccCCCceEEEEECCCccccceeccCCcCCCC-CCCEEEEEecCChHHHH
Confidence 68999999999999999999999999999983 3566665543 222232222222222 44456889999999999
Q ss_pred HHHHHCCCeEeccceeeC-CeEEEEEECCCCCEEEEEeeC
Q 040429 130 TKLMALGAELDGSIKYEI-HGKVAAMRCIDGHMLGLYEPA 168 (168)
Q Consensus 130 ~~l~~~G~~~~~~~~~~~-~g~~~~~~DPdGn~iel~e~~ 168 (168)
+++...|.++..++..-+ .|+.+.+.||+||+|.|+++.
T Consensus 87 ~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 87 ERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred HHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 999999999998887666 779999999999999999864
No 67
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.73 E-value=1.2e-16 Score=109.24 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=74.1
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHHHHHHHH
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTDINSAVTKLM 133 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~~~~~l~ 133 (168)
+|+|+.|.|+|+++|.+||+ .|||++....+....... ++..+.+...+... . ....+.+.++|+++++++|.
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~d~~~~~~~l~ 76 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEGDGLELRTAGNDHRWARLLEGARKR---L-AYLSFGIFEDDFAAFARHLE 76 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeecCceEEEecCCCceEEEeecCCCCc---e-eeEEEEeEhhhHHHHHHHHH
Confidence 68999999999999999998 599999766443322222 22334444332111 1 11234556799999999999
Q ss_pred HCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 134 ALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 134 ~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++|+++...+ ..+.++.+||.|||||.|||..+
T Consensus 77 ~~Gi~~~~~~-~~~~~~~~~~~DP~Gn~iel~~~ 109 (112)
T cd08344 77 AAGVALAAAP-PGADPDGVWFRDPDGNLLQVKVA 109 (112)
T ss_pred HcCCceecCC-CcCCCCEEEEECCCCCEEEEecC
Confidence 9999976544 23334679999999999999865
No 68
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.73 E-value=1.5e-16 Score=111.77 Aligned_cols=105 Identities=24% Similarity=0.246 Sum_probs=78.4
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEEEEecc-----cEEEEEe--CCeEEEEEeCCCCCcccCCCeEEEEEEeCCHH---H
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTVNVCTL-----RWAELQS--GPLKLALMQSPSDHVVQNGNSSLLSFTVTDIN---S 127 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~-----~~~~~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~---~ 127 (168)
+|+.|.|+|+++|++||+++||+++..... ....+.. .++.+.+..... .+...|++|.++|++ +
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~hl~~~v~d~~~~~~ 75 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPGPE-----RPGLHHVAFEVESLDDILR 75 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcCCC-----CCCeeEEEEEcCCHHHHHH
Confidence 589999999999999999999999876533 2222333 344566655321 334567999998875 6
Q ss_pred HHHHHHHCCCeEeccce-eeCC-eEEEEEECCCCCEEEEEee
Q 040429 128 AVTKLMALGAELDGSIK-YEIH-GKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~-~~~~-g~~~~~~DPdGn~iel~e~ 167 (168)
++++|+++|+++...+. .+.+ +++++|.|||||.|||.++
T Consensus 76 ~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~ 117 (131)
T cd08343 76 AADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAE 117 (131)
T ss_pred HHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcC
Confidence 78999999999875443 3333 3788999999999999875
No 69
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.73 E-value=1.2e-16 Score=106.71 Aligned_cols=106 Identities=29% Similarity=0.384 Sum_probs=86.5
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecc----cEEEEEeCCeEEEEEeCCCCCc-ccCCCeEEEEEEeCCHHHHHHHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTL----RWAELQSGPLKLALMQSPSDHV-VQNGNSSLLSFTVTDINSAVTKLM 133 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~----~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~v~dl~~~~~~l~ 133 (168)
|+.|.|+|++++++||+++|||+...... .+..+..++..+.+...+.... ...+...+++|.++|+++++++|.
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 80 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGGAEFAVLGLGGTRLELFEGDEPAPAPSGGGGVHLAFEVDDVDAAYERLK 80 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCCEEEEEEecCCceEEEecCCCCCCcccCCCeeEEEEECCCHHHHHHHHH
Confidence 78999999999999999999999888753 5666666788899988665432 123445689999999999999999
Q ss_pred HCCCeEeccce-eeCCeEEEEEECCCCCEEEE
Q 040429 134 ALGAELDGSIK-YEIHGKVAAMRCIDGHMLGL 164 (168)
Q Consensus 134 ~~G~~~~~~~~-~~~~g~~~~~~DPdGn~iel 164 (168)
++|+.+..++. ..++++.+++.||+||.|||
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 81 AAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred HcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 99998876665 44455999999999999986
No 70
>PRK10291 glyoxalase I; Provisional
Probab=99.72 E-value=3.5e-16 Score=109.48 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=72.8
Q ss_pred EEeCCHHHHHHHHHhccCCEEEEec--cc----EEEEEeC----CeEEEEEeCCCC-CcccCCCeEEEEEEeCCHHHHHH
Q 040429 62 QLHKDVPKAARFYSEGLDFTVNVCT--LR----WAELQSG----PLKLALMQSPSD-HVVQNGNSSLLSFTVTDINSAVT 130 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf~~~~~~--~~----~~~~~~~----~~~i~l~~~~~~-~~~~~~~~~~~~~~v~dl~~~~~ 130 (168)
|.|+|+++|++||+++|||++.... +. .+.+..+ ...+.+...... .........|++|.|+|+++.++
T Consensus 2 l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~hlaf~V~d~~~~~~ 81 (129)
T PRK10291 2 LRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACE 81 (129)
T ss_pred EEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCCCcceEEeeecCCCCCCcCCCCeeEEEEEeCCHHHHHH
Confidence 7899999999999999999987643 21 2222222 122333322111 11112245689999999999999
Q ss_pred HHHHCCCeEeccce-eeCCe-EEEEEECCCCCEEEEEee
Q 040429 131 KLMALGAELDGSIK-YEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 131 ~l~~~G~~~~~~~~-~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
+|+++|+++..++. ..+++ +.+||.|||||.|||++.
T Consensus 82 ~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~ 120 (129)
T PRK10291 82 KIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEE 120 (129)
T ss_pred HHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEc
Confidence 99999999875443 22333 568899999999999985
No 71
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=2.9e-16 Score=107.80 Aligned_cols=107 Identities=20% Similarity=0.173 Sum_probs=80.1
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEe-cccEEEEEeCCeEEEEEeCCCC-------CcccCCCeEEEEEEe---CCHHHH
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVC-TLRWAELQSGPLKLALMQSPSD-------HVVQNGNSSLLSFTV---TDINSA 128 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~-~~~~~~~~~~~~~i~l~~~~~~-------~~~~~~~~~~~~~~v---~dl~~~ 128 (168)
|.|.|+|+++|.+||+++|||++... .+.+..+..++..+.+...+.. .........++++.+ +|++++
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 81 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADSNDGVAFFQLGGLVLALFPREELAKDAGVPVPPPGFSGITLAHNVRSEEEVDAV 81 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccCCCceEEEEcCCeEEEEecchhhhhhcCCCCCCCCccceEEEEEcCCHHHHHHH
Confidence 68999999999999999999999877 4567667667777777653211 011112223455544 689999
Q ss_pred HHHHHHCCCeEeccceeeCC-eEEEEEECCCCCEEEEEe
Q 040429 129 VTKLMALGAELDGSIKYEIH-GKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~~~~-g~~~~~~DPdGn~iel~e 166 (168)
++++++.|+.+..++...++ ++.+|++||+||+|||..
T Consensus 82 ~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~ 120 (121)
T cd07251 82 LARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAH 120 (121)
T ss_pred HHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEee
Confidence 99999999998877654444 699999999999999974
No 72
>PLN02300 lactoylglutathione lyase
Probab=99.71 E-value=2.5e-16 Score=124.65 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=83.8
Q ss_pred cccccccccEEEEEeCCHHHHHHHHHhccCCEEEEecc----cE--EEEEeC----CeEEEEEeCCCCC-cccCCCeEEE
Q 040429 50 RVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL----RW--AELQSG----PLKLALMQSPSDH-VVQNGNSSLL 118 (168)
Q Consensus 50 ~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~----~~--~~~~~~----~~~i~l~~~~~~~-~~~~~~~~~~ 118 (168)
+.|...+++|+.|.|+|+++|++||+++|||++..... .+ ..+..+ +..+.+....... ........|+
T Consensus 18 ~~~~i~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~~~~~lel~~~~~~~~~~~~~g~~hi 97 (286)
T PLN02300 18 PKKDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPEDSNFVVELTYNYGVDKYDIGTGFGHF 97 (286)
T ss_pred CccccceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCCCceEEEEeccCCCCccccCCCccEE
Confidence 33455899999999999999999999999999876421 12 223222 2334443322111 1122345579
Q ss_pred EEEeCCHHHHHHHHHHCCCeEeccceeeC-Ce-EEEEEECCCCCEEEEEee
Q 040429 119 SFTVTDINSAVTKLMALGAELDGSIKYEI-HG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 119 ~~~v~dl~~~~~~l~~~G~~~~~~~~~~~-~g-~~~~~~DPdGn~iel~e~ 167 (168)
+|.|+|+++++++|+++|+.+...+...+ ++ +++||+|||||.|||+|.
T Consensus 98 a~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG~~iEl~~~ 148 (286)
T PLN02300 98 GIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDGYKFELIQR 148 (286)
T ss_pred EEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCCCEEEEEeC
Confidence 99999999999999999999875554333 33 678999999999999985
No 73
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.68 E-value=2.3e-15 Score=105.60 Aligned_cols=104 Identities=17% Similarity=0.163 Sum_probs=73.0
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEec---------------ccE--EEEEe----CCeEEEEEeCCCCCcccCCC
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCT---------------LRW--AELQS----GPLKLALMQSPSDHVVQNGN 114 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---------------~~~--~~~~~----~~~~i~l~~~~~~~~~~~~~ 114 (168)
++.|+.|.|+|+++|++||+++|||++.... ..| ..+.. .+..+.|....+......|.
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~lEL~~n~~~~~~~~g~ 81 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPEDDHFVVELTYNYGIGDYELGN 81 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCCCCccEEEeEecCCCCCCCCCC
Confidence 6789999999999999999999999986642 122 11221 34456565444322112222
Q ss_pred eEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 115 SSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 115 ~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
.+++|.|++. ++.++|+++|+.+...+. + ++++.||||+.|||+.
T Consensus 82 -~~~hlav~~~-d~~~~l~~~Gv~~~~~~~----~-~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 82 -DFLGITIHSK-QAVSNAKKHNWPVTEVED----G-VYEVKAPGGYKFYLID 126 (127)
T ss_pred -CEEEEEEECH-HHHHHHHHCCCceecCCC----C-EEEEECCCCCEEEEec
Confidence 2578888887 666999999998775432 2 7899999999999974
No 74
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.66 E-value=2.2e-15 Score=119.81 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=81.3
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeC---CHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVT---DINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~~ 127 (168)
.+++|+.|.|+|+++|++||+++|||++....+..+.+.. +++.+.+...+ .....|++|.++ |+++
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~g~~hiaf~v~~~~dl~~ 76 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDGQRVYLKAWDEWDHYSVILTEAD------TAGLDHMAFKVESEADLER 76 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecCceEEEEeccccccceEeeccCC------CCceeEEEEEeCCHHHHHH
Confidence 5799999999999999999999999999876554444432 34555554322 123457999997 7889
Q ss_pred HHHHHHHCCCeEeccce--eeCCeEEEEEECCCCCEEEEEee
Q 040429 128 AVTKLMALGAELDGSIK--YEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~--~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++++|+++|+.+...+. ....++.+||+|||||.|||++.
T Consensus 77 ~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~ 118 (303)
T TIGR03211 77 LVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAE 118 (303)
T ss_pred HHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEc
Confidence 99999999998764333 23345889999999999999874
No 75
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.65 E-value=3.6e-15 Score=118.01 Aligned_cols=106 Identities=19% Similarity=0.200 Sum_probs=81.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe----CCeEEEEEeCCCCCcccCCCeEEEEEEeC---CHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS----GPLKLALMQSPSDHVVQNGNSSLLSFTVT---DINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~----~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~~ 127 (168)
.+++|+.|.|+|+++|++||+++|||++....+.++.+.. ..+.+.+...+. ....+++|.++ |+++
T Consensus 3 ~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~------~~~~hiaf~v~~~~dl~~ 76 (294)
T TIGR02295 3 LRTGHVELRVTDLDKSREFYVDLLGFRETESDKEYIYLRGIEEFQHHSLVLTKAPS------AALSYIGFRVSKEEDLDK 76 (294)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEEEecCCeEEEeccCcCCceEEEeeeCCC------cCccEEEEEeCCHHHHHH
Confidence 5899999999999999999999999999877666555542 234566554322 22456899986 7899
Q ss_pred HHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 128 AVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++++|+++|+.+...+. ...++.+||+|||||.|||++.
T Consensus 77 ~~~~l~~~Gv~v~~~~~-~~~~~~~~~~DPdG~~iEl~~~ 115 (294)
T TIGR02295 77 AADFFQKLGHPVRLVRD-GGQPEALRVEDPFGYPIEFYFE 115 (294)
T ss_pred HHHHHHhcCCcEEeecC-CCCceEEEEECCCCCEEEEEEc
Confidence 99999999998764332 2334899999999999999874
No 76
>PLN02300 lactoylglutathione lyase
Probab=99.65 E-value=2.2e-14 Score=113.51 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=94.5
Q ss_pred eEEeeecCcceeeecchhccccccchhhhccccccccccccccEEEEEeCCHHHHHHHHHhccCCEEEEec--c--cEEE
Q 040429 16 IRVLHSLSGSLVKSSARLSKVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCT--L--RWAE 91 (168)
Q Consensus 16 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~--~~~~ 91 (168)
+-++.||+|..+++..+. ..+ .++.|+.|.|+|++++.+||+++|||++.... + .|..
T Consensus 132 ~~~~~DPdG~~iEl~~~~------------~~~------~~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~ 193 (286)
T PLN02300 132 IAFVKDPDGYKFELIQRG------------PTP------EPLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTI 193 (286)
T ss_pred EEEEECCCCCEEEEEeCC------------CCC------CcceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEE
Confidence 445689999999986421 112 57899999999999999999999999997542 2 3433
Q ss_pred EE--eCC----eEEEEEeCCCC-CcccCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCC--eEEEEEECCCCCEE
Q 040429 92 LQ--SGP----LKLALMQSPSD-HVVQNGNSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIH--GKVAAMRCIDGHML 162 (168)
Q Consensus 92 ~~--~~~----~~i~l~~~~~~-~~~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~--g~~~~~~DPdGn~i 162 (168)
.. .++ ..+.+...... .........+++|.|+|+++.++++.++|+.+..++...++ ++.++|+|||||.+
T Consensus 194 ~~~~~~~~~~~~~lel~~~~~~~~~~~g~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i 273 (286)
T PLN02300 194 AMMGYGPEDKTTVLELTYNYGVTEYTKGNAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKT 273 (286)
T ss_pred EEEecCCCCCccEEEEeecCCCCccccCCceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEE
Confidence 21 111 12332221111 11112334579999999999999999999998877654433 37899999999999
Q ss_pred EEEee
Q 040429 163 GLYEP 167 (168)
Q Consensus 163 el~e~ 167 (168)
+|.+.
T Consensus 274 ~~~~~ 278 (286)
T PLN02300 274 VFVDN 278 (286)
T ss_pred EEEcc
Confidence 99875
No 77
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.65 E-value=3.4e-15 Score=117.94 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=79.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEeccc---EEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCC---HHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR---WAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTD---INSA 128 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~---~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~d---l~~~ 128 (168)
.++.|+.|.|+|+++|++||+++|||++....+. |..+...++.+.+...+. ....+++|.|++ ++++
T Consensus 2 ~~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~f~V~~~~~l~~~ 75 (286)
T TIGR03213 2 RGLGYLGIGVSDVDAWREFATEVLGMMVASEGENDALYLRLDSRAHRIAVHPGES------DDLAYAGWEVADEAGLDQV 75 (286)
T ss_pred ceeeEEEEEeCCHHHHHHHHHhccCcccccCCCCceEEEEcCCCceEEEEEECCc------CCeeeEeeeeCCHHHHHHH
Confidence 4789999999999999999999999998764332 222322466777765442 123469999988 8889
Q ss_pred HHHHHHCCCeEeccce----eeCCeEEEEEECCCCCEEEEEe
Q 040429 129 VTKLMALGAELDGSIK----YEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~----~~~~g~~~~~~DPdGn~iel~e 166 (168)
.++|+++|+++...+. ....+..++|.|||||.+||+.
T Consensus 76 ~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~ 117 (286)
T TIGR03213 76 KEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYY 117 (286)
T ss_pred HHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEE
Confidence 9999999998764321 2233478999999999999986
No 78
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.64 E-value=3.3e-15 Score=100.63 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=89.3
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCC-------CeE--EEEEEeCCH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNG-------NSS--LLSFTVTDI 125 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-------~~~--~~~~~v~dl 125 (168)
..+-|..++|.|++++.+||.++||++....++.|..+..-+|++.....+.......| ..+ -+.+.++|+
T Consensus 3 ~~~FHLA~pV~Dl~~tr~FYgevlG~~~GRstd~wvdfDfyGHQ~v~Hl~~q~~~~~~g~V~~~~v~~pHfGvVl~~edW 82 (138)
T COG3565 3 PVPFHLAIPVNDLDETRRFYGEVLGCKEGRSTDTWVDFDFYGHQVVAHLTPQPDSQGSGKVDGHGVPPPHFGVVLPVEDW 82 (138)
T ss_pred ccceEEeeeccccHHHHhhhhhhcccccccccceEEEeeecccEEEEEecCCcccccCcccCCCCCCCccceEEEEHHHH
Confidence 46789999999999999999999999999999999999998999998877654211111 111 267788999
Q ss_pred HHHHHHHHHCCCeEeccce---eeCCe--EEEEEECCCCCEEEEE
Q 040429 126 NSAVTKLMALGAELDGSIK---YEIHG--KVAAMRCIDGHMLGLY 165 (168)
Q Consensus 126 ~~~~~~l~~~G~~~~~~~~---~~~~g--~~~~~~DPdGn~iel~ 165 (168)
-++.++|.++|+....+|. .+.-| +.+++.||.||.+|+-
T Consensus 83 ~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK 127 (138)
T COG3565 83 FALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFK 127 (138)
T ss_pred HHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeee
Confidence 9999999999999877765 22233 7889999999999984
No 79
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.50 E-value=1.4e-12 Score=91.33 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=77.7
Q ss_pred EEEe-CCHHHHHHHHHhccCCEEEEecc----------------cEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeC
Q 040429 61 LQLH-KDVPKAARFYSEGLDFTVNVCTL----------------RWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVT 123 (168)
Q Consensus 61 ~l~v-~D~~~a~~FY~~vLGf~~~~~~~----------------~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~ 123 (168)
.|.+ .|.++|++||+++||+++..... ..+.+..++..|.+...........+....+++.++
T Consensus 4 ~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i~g~~l~~~d~~~~~~~~~~~~~~l~i~~~ 83 (128)
T cd06588 4 YLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTIGGQRLMASDGGPGFPFTFGNGISLSVECD 83 (128)
T ss_pred EEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEECCEEEEEEcCCCCCCCCCCCCEEEEEECC
Confidence 4666 99999999999999999887531 366777888888887654332222344556888887
Q ss_pred C---HHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEE
Q 040429 124 D---INSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLY 165 (168)
Q Consensus 124 d---l~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~ 165 (168)
| +++++++|.+.| .+..++...++| +..+++||+||.|+|.
T Consensus 84 ~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 84 SEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 6 777888887766 666666644555 8999999999999973
No 80
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.45 E-value=5.5e-13 Score=91.18 Aligned_cols=109 Identities=17% Similarity=0.186 Sum_probs=76.2
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEec--ccEEEEEe-CCeEEEEEeCCCC--------CcccCCCeEEEEEEe--
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCT--LRWAELQS-GPLKLALMQSPSD--------HVVQNGNSSLLSFTV-- 122 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~--~~~~~~~~-~~~~i~l~~~~~~--------~~~~~~~~~~~~~~v-- 122 (168)
++-.|+|+|+|+++|++||+. |||+..... +..+.+-. +..-+.|.....- .......-..+++.+
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~a~~mi~~~ni~vMLL~~~~fq~F~~~~i~dt~~s~evli~ls~~s 81 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDEDAACMIISDNIFVMLLEEARFQTFTKRQIADTTKSREVLISLSAGS 81 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCcccccceeEEEeccEEEEEeccHHhhhhcccccccccCCceEEEEeccCc
Confidence 456899999999999999998 999998762 33333333 4445555443211 112233345677777
Q ss_pred -CCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEE
Q 040429 123 -TDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 123 -~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~ 165 (168)
+++|++.+++++.|.....++.....-+...|.|||||.||+.
T Consensus 82 ~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l 125 (133)
T COG3607 82 REEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFL 125 (133)
T ss_pred HHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEE
Confidence 5699999999999999866654333336678999999999985
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.45 E-value=2.1e-12 Score=99.31 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=86.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCe-EEEEEeCCCCCc--ccCCCeEEEEEEeCC---HHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPL-KLALMQSPSDHV--VQNGNSSLLSFTVTD---INSA 128 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~-~i~l~~~~~~~~--~~~~~~~~~~~~v~d---l~~~ 128 (168)
..++.+.|.|+|++++..||+++||+++.+++..-..+..++. -+.|.+.+.... +...+.-|++|-+++ +..+
T Consensus 9 ~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~~~v~L~vgg~~LL~L~q~~~a~~~~~~~aGLyH~AfLlP~r~~L~~~ 88 (265)
T COG2514 9 TFVGAVTLNVRDLDSMTSFYQEILGLQVLEETDGSVTLGVGGTPLLTLEQFPDARRPPPRAAGLYHTAFLLPTREDLARV 88 (265)
T ss_pred cEEEEEEEEeccHHHHHHHHHHhhCCeeeeccCceEEEeeCCEEEEEEEeCCCCCCCCccccceeeeeeecCCHHHHHHH
Confidence 6789999999999999999999999999999887777766554 666666555432 234455678998865 6666
Q ss_pred HHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 129 VTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
..+|.+.|+.+.|...+.- ...+||.||+||-||++-.
T Consensus 89 l~hl~~~~~~l~Ga~DH~v-SEAlYl~DPEGNGIEiYaD 126 (265)
T COG2514 89 LNHLAEEGIPLVGASDHLV-SEALYLEDPEGNGIEIYAD 126 (265)
T ss_pred HHHHHhcCCcccccCcchh-heeeeecCCCCCeEEEEec
Confidence 7788999998876543322 2679999999999999965
No 82
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=99.29 E-value=2e-11 Score=97.54 Aligned_cols=103 Identities=20% Similarity=0.206 Sum_probs=72.7
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeC---CHHHHHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVT---DINSAVTK 131 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~---dl~~~~~~ 131 (168)
.+.-||+|+|+|+++|++||+++||++. .+++.+.+. ++.-+++..... .........+++.++ ++|++.++
T Consensus 246 ~~~IfVNLpV~DL~rS~~FYt~LF~~n~--Fsde~a~cm-~dtI~vMllt~~--D~~~~~evLl~Ls~~Sre~VD~lv~~ 320 (357)
T PRK01037 246 PKTFSVVLEVQDLRRAKKFYSKMFGLEC--WDGDKLFLL-GKTSLYLQQTKA--EKKNRGTTTLSLELECEHDFVRFLRR 320 (357)
T ss_pred CceEEEEeeeCCHHHHHHHHHHHhCCCC--CCCCccccc-cCcEEEEEecCC--CCCCcceEEEEeccCCHHHHHHHHHH
Confidence 4677999999999999999999888875 333343444 554444444333 222333456888884 58889999
Q ss_pred HHHCCCeEeccce-eeCCeEEEEEECCCCCEEEEE
Q 040429 132 LMALGAELDGSIK-YEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 132 l~~~G~~~~~~~~-~~~~g~~~~~~DPdGn~iel~ 165 (168)
+.++|.....++. ++. .-.|.|||||.||++
T Consensus 321 A~aaGG~~~~~~~D~Gf---~rsf~D~DGH~WEi~ 352 (357)
T PRK01037 321 WEMLGGELGEQADGHFP---LRLVFDLDGHIWVVS 352 (357)
T ss_pred HHHcCCCCCCCcccccC---cceeECCCCCEEEEE
Confidence 9999997644443 444 456889999999996
No 83
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.27 E-value=1.4e-11 Score=84.18 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=69.6
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEeccc-------EEEEEe-CC---eEEEEEe-------C---CCCCcccC--
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR-------WAELQS-GP---LKLALMQ-------S---PSDHVVQN-- 112 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~-------~~~~~~-~~---~~i~l~~-------~---~~~~~~~~-- 112 (168)
+++|+.|.|+|+++|++||+++|||++...... ...+.. .. ....... . ........
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGPGELLAFFGFEGRAGTGFVGDVALGVPGG 81 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCcccceeecccccccccccccceEEeecCc
Confidence 689999999999999999999999999887431 111111 10 0111100 0 00000011
Q ss_pred -CCeEEEEEEeCC---HHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 113 -GNSSLLSFTVTD---INSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 113 -~~~~~~~~~v~d---l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
....++.+.+.+ +...+......|..+..... ..++..+||+|||||.+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 82 DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEeeC
Confidence 123468888887 66666677777888654332 333458999999999999975
No 84
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.26 E-value=1.4e-10 Score=78.93 Aligned_cols=93 Identities=24% Similarity=0.275 Sum_probs=68.9
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEEEEec---c---cEEEEEeCC--eEEEEEeCCCCCc---ccCCCeEEEEEEeCCHH
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTVNVCT---L---RWAELQSGP--LKLALMQSPSDHV---VQNGNSSLLSFTVTDIN 126 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~~~~~---~---~~~~~~~~~--~~i~l~~~~~~~~---~~~~~~~~~~~~v~dl~ 126 (168)
+||.|.|+|+++|++||+++||+...... . ..+.+..++ ..|.|++...+.. ...+..+|++|.|+|++
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~~~~~~~~~gi~Hia~~v~D~d 80 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGDSPLDRGGGGIHHIAFEVDDLD 80 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTTCHHHHTSSEEEEEEEEESHHH
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCCcccccCCCCEEEEEEEeCCHH
Confidence 59999999999999999999999876542 1 244455554 6888887544321 24556789999999999
Q ss_pred HHHHHHHHCCCeEeccc-eeeCCeE
Q 040429 127 SAVTKLMALGAELDGSI-KYEIHGK 150 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~-~~~~~g~ 150 (168)
+..++|+++|+.+...+ ..+..|+
T Consensus 81 ~~~~~l~~~G~~~~~~~~~~g~~g~ 105 (109)
T PF13669_consen 81 AAIARLEAQGFRVLDEGPRPGRPGR 105 (109)
T ss_dssp HHHHHHHHTTECEEECEEEETGTCS
T ss_pred HHHHHHHHCCCEEcccCcccCCCCc
Confidence 99999999999987554 3444453
No 85
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.24 E-value=6.3e-10 Score=78.60 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=82.3
Q ss_pred EEEeC-CHHHHHHHHHhccCCEEEEec---c-------------cEEEEEeCCeEEEEEeCCCCCcccCC--CeEEEEEE
Q 040429 61 LQLHK-DVPKAARFYSEGLDFTVNVCT---L-------------RWAELQSGPLKLALMQSPSDHVVQNG--NSSLLSFT 121 (168)
Q Consensus 61 ~l~v~-D~~~a~~FY~~vLGf~~~~~~---~-------------~~~~~~~~~~~i~l~~~~~~~~~~~~--~~~~~~~~ 121 (168)
.|... |-++|++||+++||+++.... + ..+.+..++..|.+...........+ ....+.+.
T Consensus 5 Yl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~g~~im~sd~~~~~~~~~~~~~s~~l~~~ 84 (136)
T COG2764 5 YLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIGGSTIMLSDAFPDMGATEGGGTSLSLDLY 84 (136)
T ss_pred EEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEECCEEEEEecCCCccCcccCCCeeEEEEEE
Confidence 57778 999999999999999887752 1 24567778888887654332222222 23356777
Q ss_pred eCCHHHHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 122 VTDINSAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 122 v~dl~~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
++|+++++++|.+.|+++.-|.+...+| ++..++||.|+.|-|..+
T Consensus 85 ~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~ 131 (136)
T COG2764 85 VEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTP 131 (136)
T ss_pred ehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecC
Confidence 8899999999999999998888866666 999999999999998764
No 86
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.7e-10 Score=82.11 Aligned_cols=54 Identities=22% Similarity=0.231 Sum_probs=46.4
Q ss_pred CeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 114 NSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 114 ~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
+.+|+||.|+|++....+++++|+++...+..+..-..+++.||||+.|||.-.
T Consensus 115 GfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgywiei~~~ 168 (170)
T KOG2944|consen 115 GFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGYWIEIELE 168 (170)
T ss_pred ccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCCeEEEeec
Confidence 567899999999999999999999987766655554678899999999999754
No 87
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.5e-09 Score=82.28 Aligned_cols=138 Identities=10% Similarity=0.098 Sum_probs=92.9
Q ss_pred CCceeeeEEeeecCcceeeecchhccccccchhhhccccccccccccccEEEEEeCCHHHHHHHHHhccCCEEEEecccE
Q 040429 10 APREVRIRVLHSLSGSLVKSSARLSKVHKRDEVRERERERRVMAAASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRW 89 (168)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~ 89 (168)
++.---+-+..+|+|.-.++-.+ ...+ ..+..|.|.|.|+++|++||++.|||++.+..+.+
T Consensus 121 ~~~g~~~~~v~dPdGykF~l~~~------------~p~s------~pv~~V~l~VgdL~ks~kyw~~~lgM~ilekeek~ 182 (299)
T KOG2943|consen 121 KGSGCGIAFVKDPDGYKFYLIDR------------GPQS------DPVLQVMLNVGDLQKSIKYWEKLLGMKILEKEEKY 182 (299)
T ss_pred cccceEEEEEECCCCcEEEEecc------------CCCC------CCeEEEEEEehhHHHHHHHHHHHhCcchhhhhhhh
Confidence 33444455667788877765221 1122 56888999999999999999999999999854433
Q ss_pred EE--EEe--CCeEEEEEeCCCCCcccCCCeEEEEEEe--CCHHHHHHHHHHCCCeEeccce--eeCCe---EEEEEECCC
Q 040429 90 AE--LQS--GPLKLALMQSPSDHVVQNGNSSLLSFTV--TDINSAVTKLMALGAELDGSIK--YEIHG---KVAAMRCID 158 (168)
Q Consensus 90 ~~--~~~--~~~~i~l~~~~~~~~~~~~~~~~~~~~v--~dl~~~~~~l~~~G~~~~~~~~--~~~~g---~~~~~~DPd 158 (168)
.. +.. ++..+.|....+.-.... .+..++|.+ +++..+.+.++..+..+.++.. ..|++ ..+.+.|||
T Consensus 183 t~~~mgYgd~q~~LElt~~~~~id~~k-g~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPD 261 (299)
T KOG2943|consen 183 TRARMGYGDEQCVLELTYNYDVIDRAK-GFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPD 261 (299)
T ss_pred hhhhhccCCcceEEEEEeccCcccccc-cceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCC
Confidence 32 322 456667766554422222 223455655 7888888888888888777665 33333 577899999
Q ss_pred CCEEEEEe
Q 040429 159 GHMLGLYE 166 (168)
Q Consensus 159 Gn~iel~e 166 (168)
||.++|+.
T Consensus 262 gheicfVd 269 (299)
T KOG2943|consen 262 GHEICFVD 269 (299)
T ss_pred CceEEEec
Confidence 99999975
No 88
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.03 E-value=3e-09 Score=79.66 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=65.9
Q ss_pred ccccEEEEEeC--CHHHHHHHHHhccCCEEEEecc--c------EEEEEe--CCeEEEEEeCCCC-C---------cccC
Q 040429 55 ASFRWILQLHK--DVPKAARFYSEGLDFTVNVCTL--R------WAELQS--GPLKLALMQSPSD-H---------VVQN 112 (168)
Q Consensus 55 ~~i~hv~l~v~--D~~~a~~FY~~vLGf~~~~~~~--~------~~~~~~--~~~~i~l~~~~~~-~---------~~~~ 112 (168)
.+++|+.+.|+ |+++|++||+++|||+...... + ...+.. +...+.|.....+ . .+..
T Consensus 2 ~~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~~~~~s~~~~fl~~~~G 81 (191)
T cd07250 2 TRIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPASGKRKSQIQEFLEYYGG 81 (191)
T ss_pred ceeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCCCCCccHHHHHHHHhCC
Confidence 47899999999 9999999999999999876531 1 222222 4567777754331 1 1113
Q ss_pred CCeEEEEEEeCCHHHHHHHHHHCCCeEeccc
Q 040429 113 GNSSLLSFTVTDINSAVTKLMALGAELDGSI 143 (168)
Q Consensus 113 ~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~ 143 (168)
.+..|++|.|+|+++.+++|+++|+++..+|
T Consensus 82 ~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 82 AGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 4566899999999999999999999987554
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.99 E-value=2.8e-08 Score=80.97 Aligned_cols=105 Identities=19% Similarity=0.178 Sum_probs=77.5
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEe---cc--cEEEEEeCCeEEEEEeCCCCC-------cccCCCeEEEEEEeC
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVC---TL--RWAELQSGPLKLALMQSPSDH-------VVQNGNSSLLSFTVT 123 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~---~~--~~~~~~~~~~~i~l~~~~~~~-------~~~~~~~~~~~~~v~ 123 (168)
+++|+.+.|+|++++.+||++.|||++... .. .+..+..++..+.|.....+. ..+.....+++|.|+
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~~~~~~~G~~~l~L~~~~~~~s~~~~~~~~hg~gv~~iaf~V~ 81 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKASHVLRQGQINFVLTAPYSSDSPAADFAAKHGDGVKDVAFRVD 81 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCceeEEEEEeCCEEEEEecCCCCCchHHHHHHhCCCceEEEEEEEC
Confidence 589999999999999999999999998876 22 344566688888887654322 112334567999999
Q ss_pred CHHHHHHHHHHCCCeEeccce------------eeCCeEEEEEECCCCC
Q 040429 124 DINSAVTKLMALGAELDGSIK------------YEIHGKVAAMRCIDGH 160 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~------------~~~~g~~~~~~DPdGn 160 (168)
|+++.++++.++|+.+..++. .++++...+|.|+++.
T Consensus 82 Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~~~~ 130 (353)
T TIGR01263 82 DAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDRGGY 130 (353)
T ss_pred CHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcCCCC
Confidence 999999999999999865432 1234456667676543
No 90
>PRK10148 hypothetical protein; Provisional
Probab=98.87 E-value=2.8e-07 Score=66.28 Aligned_cols=105 Identities=9% Similarity=0.032 Sum_probs=75.0
Q ss_pred EEEeC-CHHHHHHHHHhccCCEEEEec------------------------c--cEEEEEeCCeEEEEEeCCCCCcccCC
Q 040429 61 LQLHK-DVPKAARFYSEGLDFTVNVCT------------------------L--RWAELQSGPLKLALMQSPSDHVVQNG 113 (168)
Q Consensus 61 ~l~v~-D~~~a~~FY~~vLGf~~~~~~------------------------~--~~~~~~~~~~~i~l~~~~~~~~~~~~ 113 (168)
.|... |-++|++||+++||.++.... . ..+.+..++..|.+....... ...+
T Consensus 6 yL~f~g~a~eAi~FY~~~Fgae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ha~l~i~g~~lm~sD~~~~~-~~~~ 84 (147)
T PRK10148 6 YLSFAGNCADAIAYYQQTLGAELLYKISFGEMPKSAQDSEEGCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSG-KAHY 84 (147)
T ss_pred EEEeCCCHHHHHHHHHHHhCCEEEEEEEcccCCccccccccCCCccccCcCCcEEEEEEEECCEEEEEECCCCCc-CCCC
Confidence 45664 899999999999999875321 1 155667788777776543221 1222
Q ss_pred CeEEEEEEeCCHHH---HHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEee
Q 040429 114 NSSLLSFTVTDINS---AVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 114 ~~~~~~~~v~dl~~---~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
...++++.++|.++ ++++| +.|.++..|+....+| ++.-+.||.|+.|.|..+
T Consensus 85 ~~~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 85 SGFTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred CeEEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 35567888888877 55555 6888888888766666 899999999999999654
No 91
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=98.76 E-value=6.3e-08 Score=78.94 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=67.1
Q ss_pred ccccccccEEEEEeC--CHHHHHHHHHhccCCEEEEecc------c---EEEEE-eCCeEEEEEeCCC---CC------c
Q 040429 51 VMAAASFRWILQLHK--DVPKAARFYSEGLDFTVNVCTL------R---WAELQ-SGPLKLALMQSPS---DH------V 109 (168)
Q Consensus 51 ~m~~~~i~hv~l~v~--D~~~a~~FY~~vLGf~~~~~~~------~---~~~~~-~~~~~i~l~~~~~---~~------~ 109 (168)
.|...+++|+.+.|+ |+++++.||+++|||++....+ . ++... .+...|.|..... .. .
T Consensus 153 ~~~~~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~~g~~~i~L~ep~~~~~~s~i~~fl~ 232 (353)
T TIGR01263 153 GVGLIAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASPDGKVKIPLNEPASGKDKSQIEEFLE 232 (353)
T ss_pred CCCeEEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECCCCcEEEEEeccCCCCCCCHHHHHHH
Confidence 344468999999999 9999999999999999875421 1 11222 2456777776311 11 0
Q ss_pred cc-CCCeEEEEEEeCCHHHHHHHHHHCCCeEeccc
Q 040429 110 VQ-NGNSSLLSFTVTDINSAVTKLMALGAELDGSI 143 (168)
Q Consensus 110 ~~-~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~ 143 (168)
.+ ..+..|++|.|+|+++.+++|+++|+.+..+|
T Consensus 233 ~~~g~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 233 FYNGAGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred HcCCCCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 11 23456899999999999999999999987654
No 92
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.61 E-value=5e-07 Score=69.92 Aligned_cols=85 Identities=18% Similarity=0.117 Sum_probs=56.5
Q ss_pred eeecCcceeeecchhccccc----------------cchhhhccccc-cccc-cccccEEEEEeCCHHHHHHHHHhccCC
Q 040429 19 LHSLSGSLVKSSARLSKVHK----------------RDEVRERERER-RVMA-AASFRWILQLHKDVPKAARFYSEGLDF 80 (168)
Q Consensus 19 ~~~~~g~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~~m~-~~~i~hv~l~v~D~~~a~~FY~~vLGf 80 (168)
+.||+|-=+|.+++.++-.= +..+.....+. -++. ...|.||.|.|.|++++.+||+++|||
T Consensus 113 l~DPEGNGIEiYaDrp~~~W~~~~~~v~m~t~~ld~~~ll~~~~~~~~~g~p~~t~IGHvHL~v~~l~eA~~fY~~~LG~ 192 (265)
T COG2514 113 LEDPEGNGIEIYADRPRSTWDWQNDQVKMDTEPLDVEALLEEATKEPWTGLPAGTIIGHVHLKVADLEEAEQFYEDVLGL 192 (265)
T ss_pred ecCCCCCeEEEEecCChHHhcccCCeeeecccccCHHHHhhhccccccccCCCCcEEeEEEEEeCCHHHHHHHHHHhcCC
Confidence 37899999999999652211 11111111110 1111 267999999999999999999999999
Q ss_pred EEEEecccEEEEEe--CCeEEEEEe
Q 040429 81 TVNVCTLRWAELQS--GPLKLALMQ 103 (168)
Q Consensus 81 ~~~~~~~~~~~~~~--~~~~i~l~~ 103 (168)
+.+.+.+....+.. -+|.|+++.
T Consensus 193 ~~~~~~~~A~F~a~G~YHHHia~N~ 217 (265)
T COG2514 193 EVTARGPSALFLASGDYHHHLAANT 217 (265)
T ss_pred eeeecCCcceEEecCCcceeEEEec
Confidence 99998443333444 467777763
No 93
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.53 E-value=1.8e-05 Score=54.25 Aligned_cols=106 Identities=18% Similarity=0.126 Sum_probs=68.1
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe--CCeEEEEEeCCCCCc---ccCCCeEEEEEEeCCHHHHHHHHH
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS--GPLKLALMQSPSDHV---VQNGNSSLLSFTVTDINSAVTKLM 133 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~--~~~~i~l~~~~~~~~---~~~~~~~~~~~~v~dl~~~~~~l~ 133 (168)
+-+|.|.|=+..++||++.|||++.......+.+.. +...+.|...|.... ..+.....+.+.+++..++- .|.
T Consensus 3 ~PvlRVnnR~~ni~FY~~~LGfkll~EEna~a~lg~~~~~erlvlEESP~~rtr~V~G~KKl~~ivIkv~~~~EIe-~LL 81 (125)
T PF14506_consen 3 IPVLRVNNRDLNIDFYQKTLGFKLLSEENALAILGDQQKEERLVLEESPSMRTRAVEGPKKLNRIVIKVPNPKEIE-ALL 81 (125)
T ss_dssp EEEEEESSHHHHHHHHTTTT--EEEEEETTEEEEE-TT--EEEEEEE--TTT-B--SSS-SEEEEEEEESSHHHHH-HHH
T ss_pred CceEEEcCHHHhHHHHHhccCcEEeeccccEEEecCCCCceEEEEecCCccccccccCcceeeEEEEEcCCHHHHH-HHH
Confidence 457899999999999999999999998777777765 567777877776542 22445567899998877764 445
Q ss_pred HCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 134 ALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 134 ~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
++|..+ ...-.+..|+.+-..+|+|+++.+..
T Consensus 82 ar~~~~-~~l~kg~~gyAfe~vSPEgd~~llha 113 (125)
T PF14506_consen 82 ARGAQY-DRLYKGKNGYAFEAVSPEGDRFLLHA 113 (125)
T ss_dssp HC-S---SEEEE-SSSEEEEEE-TT--EEEEE-
T ss_pred hccccc-ceeEEcCCceEEEEECCCCCEEEEEE
Confidence 556553 33446777877778899999999864
No 94
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=4e-06 Score=63.88 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=68.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc---------------cE----EEEEe--CCeEEEEEeCCCCCc-ccC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL---------------RW----AELQS--GPLKLALMQSPSDHV-VQN 112 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~---------------~~----~~~~~--~~~~i~l~~~~~~~~-~~~ 112 (168)
.+.-|+++.|.|.++++.||+++|||.+....+ .| ..+.. .++.+.|.-+-+... .-.
T Consensus 16 ~r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEdshFViELTYNYgV~~YelG 95 (299)
T KOG2943|consen 16 RRALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPEDSHFVIELTYNYGVSKYELG 95 (299)
T ss_pred hheeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCcccEEEEEEeccCccceecc
Confidence 578899999999999999999999999887531 12 22222 245555544333211 111
Q ss_pred CCeEEEEEEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 113 GNSSLLSFTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 113 ~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
....++.+..+|+-...+.+...|.+. .+--.+++.||||+.++|.+
T Consensus 96 ndfg~i~I~s~dv~~~ve~v~~p~~~~-------~g~~~~~v~dPdGykF~l~~ 142 (299)
T KOG2943|consen 96 NDFGGITIASDDVFSKVEKVNAPGGKG-------SGCGIAFVKDPDGYKFYLID 142 (299)
T ss_pred CCcccEEEeHHHHHHHHHHhcCcCCcc-------cceEEEEEECCCCcEEEEec
Confidence 223357777777777777766544421 11145778999999999985
No 95
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.29 E-value=5.7e-06 Score=68.29 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=64.1
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecc-----------cEEEEEe--CCeEEEEEeCCC---C-C-------cc
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTL-----------RWAELQS--GPLKLALMQSPS---D-H-------VV 110 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~-----------~~~~~~~--~~~~i~l~~~~~---~-~-------~~ 110 (168)
.+|+|+.+.|+|++.++.||+++|||+.....+ ....+.. +...|.|+.... . + ..
T Consensus 179 ~~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~g~v~ipLnEP~~~~~~~SqI~eFL~~~ 258 (398)
T PLN02875 179 RRLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNNEMVLLPLNEPTFGTKRKSQIQTYLEHN 258 (398)
T ss_pred ceeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCCCcEEEEeccCCCCCCCcChHHHHHHhc
Confidence 489999999999999999999999998775321 1112222 346677766431 1 1 11
Q ss_pred cCCCeEEEEEEeCCHHHHHHHHHHC----CCeEec
Q 040429 111 QNGNSSLLSFTVTDINSAVTKLMAL----GAELDG 141 (168)
Q Consensus 111 ~~~~~~~~~~~v~dl~~~~~~l~~~----G~~~~~ 141 (168)
...+..|++|.++||.+..++|+++ |+++..
T Consensus 259 ~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~ 293 (398)
T PLN02875 259 EGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMP 293 (398)
T ss_pred CCCCeeEEEeecCCHHHHHHHHHhccccCCeecCC
Confidence 1246789999999999999999998 999876
No 96
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=98.14 E-value=5.7e-05 Score=53.68 Aligned_cols=110 Identities=19% Similarity=0.272 Sum_probs=71.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe--cccEEEEEeCCeEEEEEeCCCCCc-----ccCCCeEEEEEEeCCHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC--TLRWAELQSGPLKLALMQSPSDHV-----VQNGNSSLLSFTVTDINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~--~~~~~~~~~~~~~i~l~~~~~~~~-----~~~~~~~~~~~~v~dl~~ 127 (168)
..+++|.+.++|.+++..+++. |||+...+ +-....+..|+..+.|+..++... .|.....-++|.|+|.++
T Consensus 8 ~G~dFvEFa~~~~~~l~~~~~~-lGF~~~a~hrsk~v~l~rQG~I~~vln~ep~s~a~~~~~~HG~sv~aiafrV~Da~~ 86 (139)
T PF14696_consen 8 DGFDFVEFAVPDAQALAQLFTA-LGFQPVARHRSKDVTLYRQGDINFVLNSEPDSFAAEFAAQHGPSVCAIAFRVDDAAA 86 (139)
T ss_dssp EEEEEEEEE-SSTTSCHHHHCC-CCEEEECCECCCSEEEEEETTEEEEEEEESTSCHHHHHHHHSSEEEEEEEEES-HHH
T ss_pred CCeEEEEEecCCHHHHHHHHHH-hCcceEEecCCcceEEEEeCCEEEEEeCCCcchHHHHHHhcCCEEEEEEEEeCCHHH
Confidence 5799999999998888888875 99999876 234556777999999987665411 122233458999999999
Q ss_pred HHHHHHHCCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 128 AVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
.++++.+.|++...++ .+.+. ...-++-+.|-++-|++
T Consensus 87 A~~rA~~~GA~~~~~~-~~~~e~~~paI~g~G~sl~yfVd 125 (139)
T PF14696_consen 87 AYERAVALGAEPVQEP-TGPGELNIPAIRGIGGSLHYFVD 125 (139)
T ss_dssp HHHHHHHTT--EEEEE-EETT-BEEEEEE-CCC-EEEEEE
T ss_pred HHHHHHHcCCcCcccC-CCCCcEeeeeEEccCCCEEEEEe
Confidence 9999999999865432 22222 23334444444444443
No 97
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=97.99 E-value=9.6e-05 Score=54.30 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=47.1
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc------cEEEEEeCCeEEEEEeCCCCCc-------------ccCCCeEE
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL------RWAELQSGPLKLALMQSPSDHV-------------VQNGNSSL 117 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~------~~~~~~~~~~~i~l~~~~~~~~-------------~~~~~~~~ 117 (168)
|+|+++.|+|+++++++|++.|||.+..... .-..+..++..|.|........ ....+...
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~~~YlEli~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFGDGYLELIAIDPEAPAPDRGRWFGLDRLAGGEGLYG 80 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-SSSEEEEEEES-HHHSTGGGT-TTTHHHHT--EEEE
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeCCceEEEEEeCCcccccccccceechhhcCCCCeEE
Confidence 6899999999999999997779999987631 1222333555888876422100 01234457
Q ss_pred EEEEeCCHHHHHHHHHHCCCe
Q 040429 118 LSFTVTDINSAVTKLMALGAE 138 (168)
Q Consensus 118 ~~~~v~dl~~~~~~l~~~G~~ 138 (168)
+++.++|+++..+++.+.|+.
T Consensus 81 ~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 81 WALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp EEEE-S-HHHHHHHHHTTT-E
T ss_pred EEEecCCHHHHHHHHHhcCCC
Confidence 999999999999999999986
No 98
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=97.91 E-value=0.0012 Score=45.50 Aligned_cols=93 Identities=20% Similarity=0.155 Sum_probs=60.6
Q ss_pred EEeCCHHHHHHHHHhccCCE-EEEe---cc---------cEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHH-
Q 040429 62 QLHKDVPKAARFYSEGLDFT-VNVC---TL---------RWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTDINS- 127 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf~-~~~~---~~---------~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~- 127 (168)
.+-.|-++|.+||+++||-. +... .+ ..+.+..++..|.+...... ...+....+++.++|.++
T Consensus 8 ~F~g~a~eA~~fY~~vf~~~~i~~~~~~~~~~~~~~~~v~ha~l~i~g~~lm~~D~~~~--~~~~~~~sl~i~~~~~ee~ 85 (116)
T PF06983_consen 8 WFNGNAEEALEFYKEVFGGSEIMTFGDYPDDEPEWKDKVMHAELTIGGQKLMASDGGPD--FPFGNNISLCIECDDEEEI 85 (116)
T ss_dssp EESS-HHHHHHHHHHHSTTEEEEEEEE-TTTCTTHTTSEEEEEEEETTEEEEEEEESTS------TTEEEEEEESSHHHH
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEEeECCCCCCCCCCcEEEEEEEECCeEEEEECCCCC--CCCCCcEEEEEEcCCHHHH
Confidence 34579999999999999953 2222 11 25677889999988776522 122334568888877555
Q ss_pred --HHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEE
Q 040429 128 --AVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 128 --~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~ 165 (168)
++++|.+.|- +++.+-.+.|..|..|.|+
T Consensus 86 ~~~f~~Ls~gG~---------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 86 DRIFDKLSEGGQ---------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp HHHHHHHHTTTE---------TCCEEEEEE-TTS-EEEEE
T ss_pred HHHHHHHHcCCC---------ccceeEEEEeCCCCEEEeC
Confidence 5566766554 5558888999999999885
No 99
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=97.88 E-value=5.1e-05 Score=60.13 Aligned_cols=89 Identities=20% Similarity=0.308 Sum_probs=64.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec------ccEEEEEe--CCeEEEEEeCCCCCccc-------CC-CeEEE
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT------LRWAELQS--GPLKLALMQSPSDHVVQ-------NG-NSSLL 118 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~------~~~~~~~~--~~~~i~l~~~~~~~~~~-------~~-~~~~~ 118 (168)
.+++||.+.|.|...+..||+..|||+...+. ..|+.... |...+.+..+-.+..+. .| ..--+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgvkdv 95 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGVKDV 95 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccchhce
Confidence 68999999999999999999999999988753 13444322 44444444433221111 11 12249
Q ss_pred EEEeCCHHHHHHHHHHCCCeEeccc
Q 040429 119 SFTVTDINSAVTKLMALGAELDGSI 143 (168)
Q Consensus 119 ~~~v~dl~~~~~~l~~~G~~~~~~~ 143 (168)
+|+|+|++++.+.+.++|+.+..+|
T Consensus 96 afeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 96 AFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred EEEecchHHHHHHHHHcCCcccCCc
Confidence 9999999999999999999987664
No 100
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=97.88 E-value=0.00097 Score=55.25 Aligned_cols=88 Identities=20% Similarity=0.106 Sum_probs=62.9
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc------c--EEEEEeCCeEEEEEeCCCC--C-----------------c
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL------R--WAELQSGPLKLALMQSPSD--H-----------------V 109 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~------~--~~~~~~~~~~i~l~~~~~~--~-----------------~ 109 (168)
++||.++|.|..++..||+..|||+...+.. . ...+..+...+.+.....+ . .
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g~i~fv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSGDLVFLFTAPYSPKIGAGDDDPASTAPHPSFSSD 80 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeCCEEEEEeCCCCCccccccccccccccccccCcH
Confidence 5899999999999999999889999877532 1 2234557777777654211 0 0
Q ss_pred -------ccCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccce
Q 040429 110 -------VQNGNSSLLSFTVTDINSAVTKLMALGAELDGSIK 144 (168)
Q Consensus 110 -------~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~ 144 (168)
.|.....-++|.|+|+++.++++.++|+....++.
T Consensus 81 ~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~ 122 (398)
T PLN02875 81 AARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPT 122 (398)
T ss_pred HHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCc
Confidence 01122235899999999999999999998765443
No 101
>PF15067 FAM124: FAM124 family
Probab=97.83 E-value=0.00027 Score=53.88 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=68.9
Q ss_pred cccEEEEEeC--CHHHHHHHHHhccCCEEEEecccEEEEEe---CCeEEEEE--eCCCCCcccCCCeEEEEEEeCCHHHH
Q 040429 56 SFRWILQLHK--DVPKAARFYSEGLDFTVNVCTLRWAELQS---GPLKLALM--QSPSDHVVQNGNSSLLSFTVTDINSA 128 (168)
Q Consensus 56 ~i~hv~l~v~--D~~~a~~FY~~vLGf~~~~~~~~~~~~~~---~~~~i~l~--~~~~~~~~~~~~~~~~~~~v~dl~~~ 128 (168)
-+-.++|+|+ |.+.+++||+-+|+-+.....++|-.|.. .+.+|-|. +-+.+-.+.+-....+.|.|.|+.++
T Consensus 128 EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~esavLqF~V~~igqL 207 (236)
T PF15067_consen 128 EILRFTLYCSFDNYEDMVRFYELILQREPTQQKEDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTESAVLQFRVEDIGQL 207 (236)
T ss_pred cEEEEEEEecCCCHHHHHHHHHHHhccCcceeeCCcEEEEEecCCCeEEEEEeccCCCCCCcccccceEEEEEecchhhh
Confidence 5667899999 99999999999999999888888777755 34444333 33333233344455699999999988
Q ss_pred HHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEE
Q 040429 129 VTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGL 164 (168)
Q Consensus 129 ~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel 164 (168)
..-|-. +-...+....--.|||||.|=|
T Consensus 208 vpLLPn--------pc~PIS~~rWqT~D~DGNkILL 235 (236)
T PF15067_consen 208 VPLLPN--------PCSPISETRWQTEDYDGNKILL 235 (236)
T ss_pred cccCCC--------CcccccCCcceeeCCCCCEecc
Confidence 544422 2222233345678999999743
No 102
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.58 E-value=0.00032 Score=56.42 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=85.0
Q ss_pred CceeeeEEeeecCcceeeecchh--ccccccchhhhc-cccccccccccccEEEEEe--CCHHHHHHHHHhccCCEEEEe
Q 040429 11 PREVRIRVLHSLSGSLVKSSARL--SKVHKRDEVRER-ERERRVMAAASFRWILQLH--KDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 11 ~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~-~~~~~~m~~~~i~hv~l~v--~D~~~a~~FY~~vLGf~~~~~ 85 (168)
.-++.+-.+.++.|+++..-... ...+..+-+... ...........|+|++.++ .+++.+..||+++|||+....
T Consensus 119 ~~e~~ipai~giggsllyfvd~~~~~siyd~~f~~~~~~~~~~~~g~~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~ 198 (363)
T COG3185 119 AGEVDIPAIRGIGGSLLYFVDRYGGRSIYDVEFEPNGAQGASGGVGLTAIDHLTHNVKAGQMDTWVLFYESLFGFREIQY 198 (363)
T ss_pred CccccccceeccCCcEEEEeccCCCCcccccccccccccccccccCceeechhhhhcchhhHHHHHHHHHHHhCccceee
Confidence 34577777888999988876665 222222111111 1111111113789996554 599999999999999998876
Q ss_pred cc---c----EEEEE---eCCeEEEEEeCCCCCc--------ccCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccce
Q 040429 86 TL---R----WAELQ---SGPLKLALMQSPSDHV--------VQNGNSSLLSFTVTDINSAVTKLMALGAELDGSIK 144 (168)
Q Consensus 86 ~~---~----~~~~~---~~~~~i~l~~~~~~~~--------~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~ 144 (168)
.+ . ....+ .+...|-|+...+.+. ....+..|++|.++||-+..+++++.|+.+...|+
T Consensus 199 fdi~~p~tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~G~GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip~ 275 (363)
T COG3185 199 FDIPGPITGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYRGEGIQHIAFGTDDIYATVAALRERGVKFLPIPE 275 (363)
T ss_pred EeccCCcccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhCCCcceEEEecccHHHHHHHHHHHcCCccCCCch
Confidence 32 1 11111 1556666655444321 12335578999999999999999999999875443
No 103
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=97.48 E-value=0.0025 Score=51.41 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=76.4
Q ss_pred ccccEEEEEeCCH-HHHHHHHHhccCCEEEEe--cccEEEEEeCCeEEEEEeCCCCC-----cccCCCeEEEEEEeCCHH
Q 040429 55 ASFRWILQLHKDV-PKAARFYSEGLDFTVNVC--TLRWAELQSGPLKLALMQSPSDH-----VVQNGNSSLLSFTVTDIN 126 (168)
Q Consensus 55 ~~i~hv~l~v~D~-~~a~~FY~~vLGf~~~~~--~~~~~~~~~~~~~i~l~~~~~~~-----~~~~~~~~~~~~~v~dl~ 126 (168)
..++++.+.++|. ++..+.+.. |||+.... +.....+..|+..+.++..+... ..|.....-++|.|+|..
T Consensus 21 ~GfeFvEf~~~d~~~~l~~l~~~-lGF~~~~~Hrsk~v~l~rQGdinlvvn~~~~s~a~~f~~~Hgps~~a~a~~V~DA~ 99 (363)
T COG3185 21 DGFEFVEFAVPDPQEALGALLGQ-LGFTAVAKHRSKAVTLYRQGDINLVVNAEPDSFAAEFLDKHGPSACAMAFRVDDAE 99 (363)
T ss_pred CceeEEEEecCCHHHHHHHHHHH-hCccccccccccceeEEEeCCEEEEEcCCCcchhhHHHHhcCCchheeEEeeCCHH
Confidence 7899999999999 777777776 99998765 33555567788888877655431 122233345899999999
Q ss_pred HHHHHHHHCCCeEe-cc---------ceeeCCeEEEEEECCCC
Q 040429 127 SAVTKLMALGAELD-GS---------IKYEIHGKVAAMRCIDG 159 (168)
Q Consensus 127 ~~~~~l~~~G~~~~-~~---------~~~~~~g~~~~~~DPdG 159 (168)
..++++.++|.... .+ .-.+.+|..+||.|.+|
T Consensus 100 ~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~~ 142 (363)
T COG3185 100 QALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRYG 142 (363)
T ss_pred HHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccCC
Confidence 99999999999432 21 22566889999999984
No 104
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=97.00 E-value=0.0019 Score=43.23 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=43.9
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEeCCeEEEEEeCCCCCcc----cCCCeEEEEEEeC---CHHH
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQSGPLKLALMQSPSDHVV----QNGNSSLLSFTVT---DINS 127 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~----~~~~~~~~~~~v~---dl~~ 127 (168)
..+..+.|+|+| +++.+||+++||-. ....+.+.++.++... ..-....+=|.|+ |+.+
T Consensus 4 F~~e~i~LNV~d-~~~~~fy~~~f~~~-------------~~~~l~f~ea~G~DL~~~~~~twDLe~Lkf~V~~~~Dl~~ 69 (101)
T PF14507_consen 4 FEFESIELNVPD-AKSQSFYQSIFGGQ-------------LPFFLTFQEAQGPDLTIENNETWDLEMLKFQVPKDFDLAA 69 (101)
T ss_dssp EEE-EEEEEE-T--T---S--H---HH-------------HTTTEEEEE---CCGSS-TTSBSSEEEEEEEES-S--HHH
T ss_pred eEEEEEEEeCCC-hhHHHHHHhccccC-------------CCceEEEeeccCCccccCCCcEEeeEEEEEEecCcccHHH
Confidence 567889999999 88999999988621 1244555555444221 1222334667776 6777
Q ss_pred HHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEE
Q 040429 128 AVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGL 164 (168)
Q Consensus 128 ~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel 164 (168)
+.+++...++= .....+++-+.||+|..|.+
T Consensus 70 L~~~le~~~~f------idKk~k~l~~~Dps~IElWF 100 (101)
T PF14507_consen 70 LKSHLEEQEFF------IDKKEKFLVTSDPSQIELWF 100 (101)
T ss_dssp HHHHTTTS-EE--------TT-SEEEEE-TTS-EEEE
T ss_pred HHHHhcccceE------ecCCceEEEEECCcceEEEe
Confidence 87777663322 23345889999999988776
No 105
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=95.83 E-value=0.043 Score=36.77 Aligned_cols=53 Identities=26% Similarity=0.310 Sum_probs=40.9
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEeccceeeCCe-EEEEEECCCC-CEEEEEeeC
Q 040429 116 SLLSFTVTDINSAVTKLMA-LGAELDGSIKYEIHG-KVAAMRCIDG-HMLGLYEPA 168 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~~~g-~~~~~~DPdG-n~iel~e~~ 168 (168)
.|+++.|.|+++.++.+.. .|............+ +..++..++| ..|||++|.
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~ 56 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPL 56 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeC
Confidence 3799999999999999987 998866555555555 6667788888 689999973
No 106
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.34 E-value=0.67 Score=33.05 Aligned_cols=101 Identities=12% Similarity=0.099 Sum_probs=63.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEE----ecc----------cEEEEEeCCeEEEEEeC-CCCCcccCCCeEEEE
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNV----CTL----------RWAELQSGPLKLALMQS-PSDHVVQNGNSSLLS 119 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~----~~~----------~~~~~~~~~~~i~l~~~-~~~~~~~~~~~~~~~ 119 (168)
.++.-+..+-.+.++|..||.++|-=+..- +.. -.+.|..++..+..+.. +..+... ....++.
T Consensus 4 ~kit~~L~F~~~AeeA~~fY~s~FpdS~i~~i~r~p~~~~~g~~G~Vl~a~F~l~g~~f~~ld~g~~~~f~f-neA~S~~ 82 (151)
T COG3865 4 PKITPFLWFDGNAEEAMNFYLSTFPDSKIIGITRYPEGEPGGKEGKVLVAEFTLNGQSFMALDGGPNTSFKF-NEAFSFQ 82 (151)
T ss_pred CcceeEEEECCcHHHHHHHHHHhCCcceeeeeeecCCCCCCCCCccEEEEEEEECCeEEEEEcCCCCcCCCc-CccEEEE
Confidence 677777788899999999999987544322 111 26667777666665543 2211221 1122344
Q ss_pred EEeC---CHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEE
Q 040429 120 FTVT---DINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLY 165 (168)
Q Consensus 120 ~~v~---dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~ 165 (168)
+.++ .+|.+.++|...|.+.. ....+.|-.|.-|+|.
T Consensus 83 v~~~~q~E~Drlwnal~~~g~e~~---------~cgW~kDKfGVSWQi~ 122 (151)
T COG3865 83 VACDDQEEIDRLWNALSDNGGEAE---------ACGWLKDKFGVSWQIV 122 (151)
T ss_pred EEcCCHHHHHHHHHHHhccCcchh---------cceeEecccCcEEEEc
Confidence 4554 47778888888776322 4456889999888875
No 107
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=95.03 E-value=0.025 Score=45.25 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=62.2
Q ss_pred ccccccccEEEEEeC--CHHHHHHHHHhccCCEEEEecc------cEEE-----EEeCCeEEEEEeCC---CCCc-----
Q 040429 51 VMAAASFRWILQLHK--DVPKAARFYSEGLDFTVNVCTL------RWAE-----LQSGPLKLALMQSP---SDHV----- 109 (168)
Q Consensus 51 ~m~~~~i~hv~l~v~--D~~~a~~FY~~vLGf~~~~~~~------~~~~-----~~~~~~~i~l~~~~---~~~~----- 109 (168)
.+...+++|++.+++ .++.+.+||.++|||.--...+ .+.. +.....+|.+--+. +.+.
T Consensus 173 ~~~~~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~te~SaLrs~vlan~~esi~mpinEp~~G~k~ksQIq 252 (381)
T KOG0638|consen 173 KGGLNRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVHTEYSALRSIVLANYEESIKMPINEPAPGKKKKSQIQ 252 (381)
T ss_pred ccceeehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhhhHHHHHHHHHHhcCCccEEEeccCCCCCCccHHHHH
Confidence 344578999999999 7899999999999997654421 1111 11233444432221 1111
Q ss_pred -----ccCCCeEEEEEEeCCHHHHHHHHHHCCCeEeccc
Q 040429 110 -----VQNGNSSLLSFTVTDINSAVTKLMALGAELDGSI 143 (168)
Q Consensus 110 -----~~~~~~~~~~~~v~dl~~~~~~l~~~G~~~~~~~ 143 (168)
+..++..|+++.++||-+..+.++++|.++..+|
T Consensus 253 eyv~y~gG~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~P 291 (381)
T KOG0638|consen 253 EYVEYHGGAGVQHIALNTEDIIEAIRGLRARGGEFLSPP 291 (381)
T ss_pred HHHHhcCCCceeeeeecchHHHHHHHHHHhcCCccccCC
Confidence 1233456899999999999999999999987544
No 108
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=88.64 E-value=2 Score=27.32 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHCCCeEecccee-eCCeEEEEEECCCCCEEEEEe
Q 040429 124 DINSAVTKLMALGAELDGSIKY-EIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~~-~~~g~~~~~~DPdGn~iel~e 166 (168)
+.+++.+.+...|.. ....+. ..+.+.+...|.||+.+|+.=
T Consensus 30 ~~~~~~~~l~~~G~~-v~~ve~~~~g~yev~~~~~dG~~~ev~v 72 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQ-VREVEFDDDGCYEVEARDKDGKKVEVYV 72 (83)
T ss_pred CHHHHHHHHHhcCCc-eEEEEEcCCCEEEEEEEECCCCEEEEEE
Confidence 788999999999995 445665 334488899999999999863
No 109
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=86.65 E-value=0.48 Score=34.33 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=22.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
..+.|..+.++|+.+|..||++++|+.+...
T Consensus 21 ~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~ 51 (170)
T KOG2944|consen 21 YLLQQTMLRVKDPTGSLKFYTRVNGMALLVP 51 (170)
T ss_pred hhhhhceeecccchhhhhhhhhhccceeech
Confidence 5567777777777777777777777776553
No 110
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=83.25 E-value=10 Score=25.87 Aligned_cols=53 Identities=26% Similarity=0.376 Sum_probs=35.3
Q ss_pred eEEEEEEeCCHHHHHHHHHHCCCeEecccee-e----------CCe-EEEEEECCCC-CEEEEEee
Q 040429 115 SSLLSFTVTDINSAVTKLMALGAELDGSIKY-E----------IHG-KVAAMRCIDG-HMLGLYEP 167 (168)
Q Consensus 115 ~~~~~~~v~dl~~~~~~l~~~G~~~~~~~~~-~----------~~g-~~~~~~DPdG-n~iel~e~ 167 (168)
..|+++.|.|+++..+-....|..+...... + ..+ ...++..|+| -.+||+++
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~iel~~~ 69 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLELGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTPDGHSRLELSKF 69 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHHcCCEEccccccChHHHHHhcCCCCceEEEEEEeCCCCCceEEEEEe
Confidence 4579999999999999877789876533211 0 112 4455666666 46888763
No 111
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=72.88 E-value=29 Score=24.73 Aligned_cols=53 Identities=25% Similarity=0.182 Sum_probs=35.0
Q ss_pred eEEEEEEeCCHHHHHHHHHH-CCCeEeccc----e----e----------eCCe-EEEEEECCCCCEEEEEee
Q 040429 115 SSLLSFTVTDINSAVTKLMA-LGAELDGSI----K----Y----------EIHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 115 ~~~~~~~v~dl~~~~~~l~~-~G~~~~~~~----~----~----------~~~g-~~~~~~DPdGn~iel~e~ 167 (168)
..|+++.|.|+++..+-..+ .|.++.... . . .+.. ...++..++|..+|+++.
T Consensus 5 i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~ 77 (162)
T TIGR03645 5 FSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEF 77 (162)
T ss_pred EEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEec
Confidence 45899999999999987754 787653210 0 0 0111 345566677888999875
No 112
>PLN02367 lactoylglutathione lyase
Probab=70.28 E-value=29 Score=26.90 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=27.2
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
..+.|+.+.|.|++++.+-..+ .|.++...
T Consensus 168 ~G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~ 197 (233)
T PLN02367 168 RGFGHIGITVDDVYKACERFEE-LGVEFVKK 197 (233)
T ss_pred CCceEEEEEcCCHHHHHHHHHH-CCCEEEeC
Confidence 4799999999999999999998 99998864
No 113
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=69.47 E-value=5.8 Score=28.76 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhcc
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGL 78 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vL 78 (168)
.+|.++.+.++|.+++.++|.++|
T Consensus 152 ~~i~~v~i~~~d~~~~~~~~~~l~ 175 (175)
T PF13468_consen 152 LGITRVVIAVPDPDAAAARYARLL 175 (175)
T ss_dssp EEEEEEEEEETTHHHHHHHHHHH-
T ss_pred ceEEEEEEEeCCHHHHHHHHHhhC
Confidence 689999999999999999999865
No 114
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=68.46 E-value=26 Score=21.76 Aligned_cols=49 Identities=27% Similarity=0.222 Sum_probs=32.3
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 117 LLSFTVTDINSAVTKLMA-LGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 117 ~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
|+.+.+.|+++..+-..+ .|.+....... ......++.++ +..++|.++
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~~~~~~~~~~-~~~i~l~~~ 50 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GGAEFAVLGLG-GTRLELFEG 50 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CCEEEEEEecC-CceEEEecC
Confidence 467888999999998865 88876543321 22355556655 677777653
No 115
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=68.31 E-value=30 Score=22.46 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=31.9
Q ss_pred eEEEEEEeCCHHHHHHHHH-HCCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 115 SSLLSFTVTDINSAVTKLM-ALGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 115 ~~~~~~~v~dl~~~~~~l~-~~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
..|+.+.|.|+++..+-.. ..|..+.......... ..+.+..+++..+++++
T Consensus 4 ~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 57 (125)
T cd08352 4 IHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFS 57 (125)
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEE
Confidence 3579999999999999875 5888865332222212 22333445566666653
No 116
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=68.03 E-value=26 Score=23.11 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=30.6
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 116 SLLSFTVTDINSAVTKLM-ALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~-~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
.|+.+.|.|+++..+-.. ..|.+..........+...++..+++..++|.+
T Consensus 3 ~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~ 54 (128)
T TIGR03081 3 DHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLE 54 (128)
T ss_pred CEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEe
Confidence 468999999999988775 568776432222222323333333455666654
No 117
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=67.20 E-value=27 Score=22.92 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=32.0
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEeccceee-CCe-EEEEEECCCCCEEEEEee
Q 040429 116 SLLSFTVTDINSAVTKLMA-LGAELDGSIKYE-IHG-KVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~-~~g-~~~~~~DPdGn~iel~e~ 167 (168)
.|+.+.|.|+++..+...+ .|.......... ..+ ...++.. +|..++|+++
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~~~ 55 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGL-GNVQIELIEP 55 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEc-CCEEEEEEEE
Confidence 3689999999999987754 787764322221 122 3344443 6677777764
No 118
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=65.80 E-value=25 Score=22.39 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=17.9
Q ss_pred EEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 60 ILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 60 v~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
+.....+=+.|.++|++ |||+....
T Consensus 58 ~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 58 FLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred EEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 34455678899999999 99998754
No 119
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=64.75 E-value=36 Score=22.10 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=31.7
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEeccceeeCCe-EEEEEECCC---CCEEEEEe
Q 040429 116 SLLSFTVTDINSAVTKLMA-LGAELDGSIKYEIHG-KVAAMRCID---GHMLGLYE 166 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~~~g-~~~~~~DPd---Gn~iel~e 166 (168)
.|+.+.+.|+++..+-... .|.+..........+ ..+++..++ +..+++.+
T Consensus 2 ~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 57 (121)
T cd07233 2 LHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTY 57 (121)
T ss_pred eeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEe
Confidence 4689999999999998854 588865433222222 234444443 46777654
No 120
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=63.64 E-value=28 Score=23.73 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=35.7
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEeccc------EEEEE-eCCeEEEEEeCCC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLR------WAELQ-SGPLKLALMQSPS 106 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~------~~~~~-~~~~~i~l~~~~~ 106 (168)
..+.|+.+.|.|++++.+-.++ .|.++...... .+.+. .++..|.|.+.++
T Consensus 68 ~g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~ 125 (136)
T cd08342 68 DGVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKG 125 (136)
T ss_pred CceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccCCcEEEEEecCC
Confidence 4678999999999999999998 89998764321 11122 2566666666543
No 121
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=63.20 E-value=34 Score=25.24 Aligned_cols=53 Identities=23% Similarity=0.212 Sum_probs=36.0
Q ss_pred eEEEEEEeC--CHHHHHHHH-HHCCCeEecccee--eCCe-EEEEEECCCCC-EEEEEee
Q 040429 115 SSLLSFTVT--DINSAVTKL-MALGAELDGSIKY--EIHG-KVAAMRCIDGH-MLGLYEP 167 (168)
Q Consensus 115 ~~~~~~~v~--dl~~~~~~l-~~~G~~~~~~~~~--~~~g-~~~~~~DPdGn-~iel~e~ 167 (168)
..|+++.|. |+++..+.. ...|......... ...+ +..++..|+|+ .++|.+|
T Consensus 4 iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~ 63 (191)
T cd07250 4 IDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEP 63 (191)
T ss_pred eeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecC
Confidence 457999999 999999876 4588876533221 1233 56778888754 5778765
No 122
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.39 E-value=23 Score=22.06 Aligned_cols=38 Identities=21% Similarity=0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCeEecc-ce-eeCCe-EEEEEECCCCCEE
Q 040429 125 INSAVTKLMALGAELDGS-IK-YEIHG-KVAAMRCIDGHML 162 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~-~~-~~~~g-~~~~~~DPdGn~i 162 (168)
+.++.+.+...|+.+... +. .+..- -.||+.|++|+.+
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl 55 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKL 55 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCC
Confidence 456777889999997643 22 22222 5899999999865
No 123
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=58.81 E-value=72 Score=23.61 Aligned_cols=42 Identities=12% Similarity=0.058 Sum_probs=28.5
Q ss_pred CeEEEEEEeCCHHHHHHHH-HHCCCeEeccceeeCCeEEEEEE
Q 040429 114 NSSLLSFTVTDINSAVTKL-MALGAELDGSIKYEIHGKVAAMR 155 (168)
Q Consensus 114 ~~~~~~~~v~dl~~~~~~l-~~~G~~~~~~~~~~~~g~~~~~~ 155 (168)
...|+++.|.|+++..+-. ...|.++.........+..+||.
T Consensus 27 ~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl 69 (185)
T PLN03042 27 IMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFL 69 (185)
T ss_pred EEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEE
Confidence 3468999999999999977 46788875443333344445554
No 124
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=58.72 E-value=48 Score=21.52 Aligned_cols=51 Identities=16% Similarity=0.123 Sum_probs=33.2
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEecccee-e-CCeEEEEEECC---CCCEEEEEe
Q 040429 116 SLLSFTVTDINSAVTKLM-ALGAELDGSIKY-E-IHGKVAAMRCI---DGHMLGLYE 166 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~-~~G~~~~~~~~~-~-~~g~~~~~~DP---dGn~iel~e 166 (168)
.|+.+.|.|+++..+-.. ..|.+....... . .+...+++.+. .|..++|++
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 59 (126)
T cd08346 3 HHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFE 59 (126)
T ss_pred ccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEe
Confidence 468999999999999775 468876533221 1 12344556554 567777765
No 125
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=57.66 E-value=19 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 124 DINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 124 dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++++-..+...+|-.+... ...| .+-..+|||.++.|.+.
T Consensus 5 ~ls~~ea~~l~~Gr~l~~~---~~~g-~~aa~~pdG~lvAL~~~ 44 (56)
T PF09142_consen 5 ELSAEEARDLRHGRRLPAA---GPPG-PVAAFAPDGRLVALLEE 44 (56)
T ss_dssp E--HHHHHHHHTT---B--------S--EEEE-TTS-EEEEEEE
T ss_pred ECCHHHHHHHhCCCccCCC---CCCc-eEEEECCCCcEEEEEEc
Confidence 4556666677778776433 2222 35578999999999875
No 126
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=56.90 E-value=48 Score=20.99 Aligned_cols=30 Identities=13% Similarity=-0.098 Sum_probs=26.6
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
....|+.+.|.|++++.+...+ +|.++...
T Consensus 55 ~~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~ 84 (108)
T PF12681_consen 55 GGGFHLCFEVEDVDALYERLKE-LGAEIVTE 84 (108)
T ss_dssp SSEEEEEEEESHHHHHHHHHHH-TTSEEEEE
T ss_pred CceeEEEEEEcCHHHHHHHHHH-CCCeEeeC
Confidence 5788999999999999999998 99997654
No 127
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=56.39 E-value=50 Score=21.05 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=30.3
Q ss_pred EEEEEeCCHHHHHHHHHH-CCCeEeccceeeCCeEEEEEECCCC--CEEEEE
Q 040429 117 LLSFTVTDINSAVTKLMA-LGAELDGSIKYEIHGKVAAMRCIDG--HMLGLY 165 (168)
Q Consensus 117 ~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~DPdG--n~iel~ 165 (168)
|+.+.|.|+++..+-... .|.++...........++.+.++++ ..+++.
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 52 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLA 52 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEe
Confidence 478899999999887754 8888653322112224555666654 345554
No 128
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=53.46 E-value=60 Score=21.04 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=29.5
Q ss_pred EEEEEEeCCHHHHHHHHHH-CCCeEeccceeeCCe-EEEEEECCCCCEEEEEe
Q 040429 116 SLLSFTVTDINSAVTKLMA-LGAELDGSIKYEIHG-KVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~-~G~~~~~~~~~~~~g-~~~~~~DPdGn~iel~e 166 (168)
.|+++.|.|+++..+-..+ .|.+..........+ ...++.-.+|..+++++
T Consensus 3 ~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 55 (125)
T cd07241 3 EHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMT 55 (125)
T ss_pred eEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEc
Confidence 5799999999999886644 577643211111122 22333333566777764
No 129
>PRK10291 glyoxalase I; Provisional
Probab=52.21 E-value=50 Score=22.05 Aligned_cols=50 Identities=12% Similarity=0.011 Sum_probs=34.5
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEec-----c-cE-EE-EEeCCeEEEEEeCC
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCT-----L-RW-AE-LQSGPLKLALMQSP 105 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~-----~-~~-~~-~~~~~~~i~l~~~~ 105 (168)
..+.|+.+.|.|++++.+-..+ .|.++.... . .+ +. ...++..|.|.+..
T Consensus 64 ~~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~ 121 (129)
T PRK10291 64 TAYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEK 121 (129)
T ss_pred CCeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCCCCEEEEEEcc
Confidence 4688999999999999999988 898876431 1 11 22 23366777776643
No 130
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=51.46 E-value=54 Score=22.57 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=23.3
Q ss_pred cccEEEEEe-CCHHHHHHHHHhccCCEEEEecccEE
Q 040429 56 SFRWILQLH-KDVPKAARFYSEGLDFTVNVCTLRWA 90 (168)
Q Consensus 56 ~i~hv~l~v-~D~~~a~~FY~~vLGf~~~~~~~~~~ 90 (168)
.+..+.+.| ++=.+|++||++ +||........+.
T Consensus 112 ~~~~i~l~v~~~N~~a~~~y~k-~GF~~~g~~~~~~ 146 (162)
T PRK10140 112 RVDRIELTVFVDNAPAIKVYKK-YGFEIEGTGKKYA 146 (162)
T ss_pred CccEEEEEEEcCCHHHHHHHHH-CCCEEEeecccce
Confidence 455566554 455678999998 9999877644333
No 131
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=50.59 E-value=83 Score=21.89 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=51.9
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEEEEEe------------CCeEEEEEeCCCCCcccCCCeEEEEEEe
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWAELQS------------GPLKLALMQSPSDHVVQNGNSSLLSFTV 122 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~~~~~------------~~~~i~l~~~~~~~~~~~~~~~~~~~~v 122 (168)
.-+.-+-+.|++.+.+.+=..+ -||.+...+--...... +++++-+--.... . +-.....+.+.+
T Consensus 40 ~dFGIiRmvV~~~d~A~~~Lee-~gF~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAF-v-~ek~KAlli~r~ 116 (142)
T COG4747 40 GDFGIIRMVVDRPDEAHSVLEE-AGFTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAF-V-TEKQKALLIVRV 116 (142)
T ss_pred cCcceEEEEcCChHHHHHHHHH-CCcEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeee-e-ecCceEEEEEEh
Confidence 3456677889999999999998 89988775321111110 1111111000000 0 000123477889
Q ss_pred CCHHHHHHHHHHCCCeEecc
Q 040429 123 TDINSAVTKLMALGAELDGS 142 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~~~ 142 (168)
+|+|+..+.|..+|+...++
T Consensus 117 ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 117 EDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred hHHHHHHHHHHHcCCeecCh
Confidence 99999999999999998754
No 132
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=46.94 E-value=23 Score=28.57 Aligned_cols=37 Identities=11% Similarity=-0.164 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCC
Q 040429 123 TDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDG 159 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdG 159 (168)
+.+|.+++.++++|+---.-.-.+.+|..++|.||.-
T Consensus 266 ~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p~k 302 (333)
T COG2605 266 DAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDPSK 302 (333)
T ss_pred HHHHHHHHHHHhcCchhceeeccCCccEEEEEeCccc
Confidence 6799999999999876322222456668888999963
No 133
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=46.75 E-value=25 Score=16.65 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=8.8
Q ss_pred EEEEECCCCCEE
Q 040429 151 VAAMRCIDGHML 162 (168)
Q Consensus 151 ~~~~~DPdGn~i 162 (168)
...+.|++|++|
T Consensus 8 ~~i~~D~~G~lW 19 (24)
T PF07494_consen 8 YSIYEDSDGNLW 19 (24)
T ss_dssp EEEEE-TTSCEE
T ss_pred EEEEEcCCcCEE
Confidence 456899999987
No 134
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.01 E-value=14 Score=28.49 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=20.6
Q ss_pred EeCCHHHHHHHHHhccCCEEEEecc
Q 040429 63 LHKDVPKAARFYSEGLDFTVNVCTL 87 (168)
Q Consensus 63 ~v~D~~~a~~FY~~vLGf~~~~~~~ 87 (168)
-..|+.+++.||.+.||+++..--+
T Consensus 143 dsa~~~e~a~wy~dyLGleie~~hg 167 (246)
T KOG4657|consen 143 DSADIHEAASWYNDYLGLEIEAGHG 167 (246)
T ss_pred hhhccHHHHHHHHHhcCceeeeccC
Confidence 3568899999999999999876533
No 135
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=44.64 E-value=83 Score=20.15 Aligned_cols=30 Identities=20% Similarity=-0.079 Sum_probs=25.0
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
....|+.+.++|++++.+-..+ .|.++...
T Consensus 60 ~~~~~~~f~v~di~~~~~~l~~-~g~~~~~~ 89 (114)
T cd07247 60 PPGWLVYFAVDDVDAAAARVEA-AGGKVLVP 89 (114)
T ss_pred CCeEEEEEEeCCHHHHHHHHHH-CCCEEEeC
Confidence 3566889999999999998888 89987754
No 136
>PRK11478 putative lyase; Provisional
Probab=44.62 E-value=89 Score=20.52 Aligned_cols=29 Identities=10% Similarity=0.147 Sum_probs=24.9
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEE
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNV 84 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~ 84 (168)
..+.|+.+.|.|++++.+-..+ .|.++..
T Consensus 74 ~g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 74 CGLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred CceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 3578999999999999998887 8998764
No 137
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=43.96 E-value=1.1e+02 Score=21.55 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=29.9
Q ss_pred EEEEEEeCCHHHHHHHHH-HCCCeEeccceeeCCeEEEEEEC-CCCCEEEEEee
Q 040429 116 SLLSFTVTDINSAVTKLM-ALGAELDGSIKYEIHGKVAAMRC-IDGHMLGLYEP 167 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~-~~G~~~~~~~~~~~~g~~~~~~D-PdGn~iel~e~ 167 (168)
.|+.+.|.|+++..+-.. -.|.+...... ....++..+ .+|+.+++++.
T Consensus 3 ~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~ 53 (157)
T cd08347 3 HGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRVRLEEGGGGPGAVVDVLEE 53 (157)
T ss_pred ccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEEEEEecCCCCCCEEEEEeC
Confidence 479999999999988774 45877653211 111111112 34777877653
No 138
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=42.31 E-value=97 Score=20.30 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=20.1
Q ss_pred EEEEEEeCCHHHHHHHHHHC----CCeEec
Q 040429 116 SLLSFTVTDINSAVTKLMAL----GAELDG 141 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~~----G~~~~~ 141 (168)
.|+.+.+.|+++..+-..+. |.+...
T Consensus 3 ~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~ 32 (128)
T cd07242 3 HHVELTVRDLERSRAFYDWLLGLLGFEEVK 32 (128)
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999998876554 877653
No 139
>PTZ00330 acetyltransferase; Provisional
Probab=41.65 E-value=44 Score=22.66 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=19.9
Q ss_pred cccEEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 56 SFRWILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 56 ~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
.+..+.+.+. +.|.+||++ +||+..+.
T Consensus 115 ~~~~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 115 GCYKVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred CCCEEEEecC--hHHHHHHHH-CCCEEece
Confidence 3445566653 579999998 99997764
No 140
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=41.23 E-value=56 Score=22.07 Aligned_cols=40 Identities=13% Similarity=0.093 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 123 TDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.|++...+-|.+.|+++...-.-+..++.++|.--+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 6888999999999999986655666778887766666654
No 141
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=41.09 E-value=71 Score=21.54 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 125 INSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
+.++.+-|+++|+. ++++|+.+|..+++.++|
T Consensus 26 WPE~~a~lk~agi~----------nYSIfLde~~n~lFgy~E 57 (105)
T COG3254 26 WPELLALLKEAGIR----------NYSIFLDEEENLLFGYWE 57 (105)
T ss_pred cHHHHHHHHHcCCc----------eeEEEecCCcccEEEEEE
Confidence 34555666777665 577888888888887776
No 142
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.82 E-value=74 Score=18.20 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEEEEeCCHHHHHHHHHHCCCeE
Q 040429 116 SLLSFTVTDINSAVTKLMALGAEL 139 (168)
Q Consensus 116 ~~~~~~v~dl~~~~~~l~~~G~~~ 139 (168)
..+.+.+++.+.+.+.|+++|..+
T Consensus 41 ~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 41 ALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred EEEEEEeCCHHHHHHHHHHCCceE
Confidence 457888999999999999999864
No 143
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=38.92 E-value=49 Score=23.24 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=22.2
Q ss_pred cEEEEEeC-CHHHHHHHHHhccCCEEEEecc
Q 040429 58 RWILQLHK-DVPKAARFYSEGLDFTVNVCTL 87 (168)
Q Consensus 58 ~hv~l~v~-D~~~a~~FY~~vLGf~~~~~~~ 87 (168)
..+.|.|. |=+.|+.||++ +||+......
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~~~ 156 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKIRK 156 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEeeeh
Confidence 56666665 55599999999 9999877643
No 144
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.43 E-value=65 Score=19.04 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=18.7
Q ss_pred EEEeCCHHHHHHHHHHCCCeEecc
Q 040429 119 SFTVTDINSAVTKLMALGAELDGS 142 (168)
Q Consensus 119 ~~~v~dl~~~~~~l~~~G~~~~~~ 142 (168)
.+...+.+++.+.|+++|.++..|
T Consensus 48 ~v~~~~~~~~~~~L~~~G~~v~~~ 71 (72)
T cd04883 48 RVQTMNPRPIIEDLRRAGYEVLWP 71 (72)
T ss_pred EEecCCHHHHHHHHHHCCCeeeCC
Confidence 334458889999999999987654
No 145
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=36.67 E-value=51 Score=19.94 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=16.3
Q ss_pred cEEEEEeCCHHHHHHHHHhccCCEE
Q 040429 58 RWILQLHKDVPKAARFYSEGLDFTV 82 (168)
Q Consensus 58 ~hv~l~v~D~~~a~~FY~~vLGf~~ 82 (168)
..+.+.+. +++.+||+. +||+.
T Consensus 58 ~~i~l~~~--~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 58 KKIFLFTN--PAAIKFYEK-LGFEE 79 (79)
T ss_dssp SEEEEEEE--HHHHHHHHH-TTEEE
T ss_pred CcEEEEEc--HHHHHHHHH-CcCCC
Confidence 44555552 689999999 99974
No 146
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.12 E-value=1.2e+02 Score=18.98 Aligned_cols=38 Identities=18% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHHHHHCCCeEecc-ce-eeCCe-EEEEEECCCCCEE
Q 040429 125 INSAVTKLMALGAELDGS-IK-YEIHG-KVAAMRCIDGHML 162 (168)
Q Consensus 125 l~~~~~~l~~~G~~~~~~-~~-~~~~g-~~~~~~DPdGn~i 162 (168)
+-++...|...|+.+... +. .+... -.+|++|.+|+.+
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl 55 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTL 55 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCcc
Confidence 445667788999887632 22 22222 5899999999876
No 147
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.05 E-value=71 Score=23.36 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=32.2
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 120 FTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 120 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
+.-.|++...+.|.+.|+++...-.-+..|+.++|.--+|..+
T Consensus 112 IG~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v~ 154 (167)
T PRK13498 112 VADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNVW 154 (167)
T ss_pred hHHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 3447899999999999999886655566677777666666554
No 148
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=32.99 E-value=31 Score=17.81 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=13.3
Q ss_pred EeCCHHHHHHHHHhccCC
Q 040429 63 LHKDVPKAARFYSEGLDF 80 (168)
Q Consensus 63 ~v~D~~~a~~FY~~vLGf 80 (168)
...|.++|+++|++.|.+
T Consensus 11 ~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 11 QQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HCT-HHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 346899999999997643
No 149
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=32.64 E-value=1.5e+02 Score=20.14 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=21.9
Q ss_pred ccccEEEEEe-CCHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLH-KDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v-~D~~~a~~FY~~vLGf~~~~~ 85 (168)
.++.++.+.+ ++-.++.+||++ +||+....
T Consensus 95 ~~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 95 RGVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CCCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 3566666654 444789999999 99997664
No 150
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=32.55 E-value=72 Score=23.20 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=31.5
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|.+.|+++...-.-+..++.++|.--+|..+
T Consensus 110 G~rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 151 (162)
T PRK13490 110 GNRNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKVY 151 (162)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEEE
Confidence 337899999999999999886555566677777666666553
No 151
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=32.50 E-value=1.1e+02 Score=20.90 Aligned_cols=35 Identities=11% Similarity=-0.009 Sum_probs=24.2
Q ss_pred cccEEEEE-eCCHHHHHHHHHhccCCEEEEecccEEE
Q 040429 56 SFRWILQL-HKDVPKAARFYSEGLDFTVNVCTLRWAE 91 (168)
Q Consensus 56 ~i~hv~l~-v~D~~~a~~FY~~vLGf~~~~~~~~~~~ 91 (168)
.+..+.+. .++=.+|++||+. +||+.......+..
T Consensus 109 ~~~~i~~~v~~~N~~s~~~y~k-~Gf~~~g~~~~~~~ 144 (156)
T TIGR03585 109 GLHKLSLEVLEFNNKALKLYEK-FGFEREGVFRQGIF 144 (156)
T ss_pred CeeEEEEEEeccCHHHHHHHHH-cCCeEeeeehhhee
Confidence 45556554 3566889999999 99998776443333
No 152
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=32.40 E-value=50 Score=19.77 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=17.3
Q ss_pred cccEEEEEe-CCHHHHHHHHHhccCCE
Q 040429 56 SFRWILQLH-KDVPKAARFYSEGLDFT 81 (168)
Q Consensus 56 ~i~hv~l~v-~D~~~a~~FY~~vLGf~ 81 (168)
.+..+.+.+ .+-..+.+||++ +||+
T Consensus 58 g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 58 GIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp TESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred CccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 455565544 445559999998 9985
No 153
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=32.21 E-value=48 Score=23.00 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=24.8
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEE
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVN 83 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~ 83 (168)
..-+|+.+.-.|+++|++=.++ .|+++.
T Consensus 100 ydtDhiLVr~~dLekAv~~L~e-aGhev~ 127 (128)
T COG3603 100 YDTDHILVREEDLEKAVKALEE-AGHEVL 127 (128)
T ss_pred ccCceEEEehhhHHHHHHHHHH-cCCccc
Confidence 5678999999999999999999 898864
No 154
>COG0051 RpsJ Ribosomal protein S10 [Translation, ribosomal structure and biogenesis]
Probab=31.67 E-value=1.3e+02 Score=20.32 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=27.8
Q ss_pred EEEeCCHHH----HHHHHHHCCCeEeccceeeCCe-EEEEEECCCCC
Q 040429 119 SFTVTDINS----AVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGH 160 (168)
Q Consensus 119 ~~~v~dl~~----~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn 160 (168)
+|+...+|. +.+.++..|+.+.||..-+.-- .+.-++-|+|+
T Consensus 12 s~d~~~LD~~~~~Ive~akrtg~~v~GPiPLPTk~~~~tvlrsP~~~ 58 (104)
T COG0051 12 SFDHRLLDQVCREIVETAKRTGADVKGPIPLPTKRERVTVLRSPHGE 58 (104)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCeeeCCccCCCceEEEEEEeCCCCC
Confidence 344455555 4556788999999886544433 56667888876
No 155
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=31.12 E-value=81 Score=23.50 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=32.7
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|.+.|+.+...-.-+..|+.++|.--+|..+
T Consensus 110 G~rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 110 GEQNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 347899999999999999886655666777887766667664
No 156
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.94 E-value=85 Score=22.78 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=31.6
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|.+.|+++...-.-+..++.++|.--+|..+
T Consensus 103 G~rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 103 GARNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 337899999999999999886555566677777766666654
No 157
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.62 E-value=88 Score=22.84 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=31.6
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|.+.|+++...-.-+..++.++|.--+|..+
T Consensus 112 G~rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v~ 153 (163)
T PRK13494 112 GLENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKVI 153 (163)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 347899999999999999886655566677777766666553
No 158
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=29.32 E-value=84 Score=24.01 Aligned_cols=42 Identities=2% Similarity=-0.141 Sum_probs=31.7
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|.+.|+++...-.-+..|+.++|.--+|..+
T Consensus 137 G~rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v~ 178 (213)
T PRK13493 137 GEKNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQAW 178 (213)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 347899999999999999886655666777776666566543
No 159
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=28.97 E-value=1.3e+02 Score=24.36 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=29.2
Q ss_pred eEEEEEEe------CCHHHHHHHHHHCCCeEe---ccceeeCCe--E---------EEEEECCCCCE
Q 040429 115 SSLLSFTV------TDINSAVTKLMALGAELD---GSIKYEIHG--K---------VAAMRCIDGHM 161 (168)
Q Consensus 115 ~~~~~~~v------~dl~~~~~~l~~~G~~~~---~~~~~~~~g--~---------~~~~~DPdGn~ 161 (168)
.+|+...| .||+++.+.++++|+.+. +.++..+.+ + .+.|.|.+|-.
T Consensus 185 ~NH~T~~v~~l~~~~dI~~v~~~l~~~G~~~n~~g~~Iegsp~~lLrQtS~~A~~~~v~F~d~~g~~ 251 (302)
T PF07063_consen 185 INHFTPRVNRLKKFLDIDAVNAFLKERGIPMNDSGGEIEGSPDGLLRQTSTMADEEEVTFADGDGSL 251 (302)
T ss_dssp -SEEEEETTT-TT-S-HHHHHHHHHHTT--B--TTSSSEECCCCSEEEEEBEEEEEEEEETTETS-E
T ss_pred cceeeceeecccccccHHHHHHHHHHcCCCccccCCceEECCCCCEEEEeeccceeEEEEecCCCce
Confidence 45789999 999999999999999887 444433333 1 35567777633
No 160
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=28.87 E-value=63 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.121 Sum_probs=19.6
Q ss_pred ccccEEEEEeC-CHHHHHHHHHhccCCEEEE
Q 040429 55 ASFRWILQLHK-DVPKAARFYSEGLDFTVNV 84 (168)
Q Consensus 55 ~~i~hv~l~v~-D~~~a~~FY~~vLGf~~~~ 84 (168)
.....+.|.+. +-..|.+||+. +||....
T Consensus 108 ~~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~~ 137 (144)
T PRK10146 108 AGAEMTELSTNVKRHDAHRFYLR-EGYEQSH 137 (144)
T ss_pred cCCcEEEEecCCCchHHHHHHHH-cCCchhh
Confidence 34555666543 33489999999 9997553
No 161
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.73 E-value=1.3e+02 Score=18.91 Aligned_cols=24 Identities=17% Similarity=0.350 Sum_probs=20.1
Q ss_pred EEEEEeCC----HHHHHHHHHHCCCeEe
Q 040429 117 LLSFTVTD----INSAVTKLMALGAELD 140 (168)
Q Consensus 117 ~~~~~v~d----l~~~~~~l~~~G~~~~ 140 (168)
.+.++++| ++++.+.|+++|..+.
T Consensus 43 ~i~ie~~~~~~~~~~i~~~L~~~G~~~~ 70 (85)
T cd04906 43 FVGVSVANGAEELAELLEDLKSAGYEVV 70 (85)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHCCCCeE
Confidence 46678777 9999999999999865
No 162
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=28.70 E-value=14 Score=20.87 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=17.1
Q ss_pred ccEEEEEeCCHHHHHHHHHhcc
Q 040429 57 FRWILQLHKDVPKAARFYSEGL 78 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vL 78 (168)
++-..+++++++++..||...|
T Consensus 12 ~De~giP~~~vd~~kDWYktMF 33 (47)
T PF02208_consen 12 VDESGIPLSNVDRPKDWYKTMF 33 (47)
T ss_pred cccCCCccccccchhHHHHHHH
Confidence 4445677799999999999854
No 163
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=28.31 E-value=1.1e+02 Score=22.15 Aligned_cols=30 Identities=10% Similarity=0.083 Sum_probs=22.2
Q ss_pred ccccEEEEEeC-CHHHHHHHHHhccCCEEEEe
Q 040429 55 ASFRWILQLHK-DVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 55 ~~i~hv~l~v~-D~~~a~~FY~~vLGf~~~~~ 85 (168)
..+..+.+.|. +-.++.+||++ +||+....
T Consensus 158 ~g~~~i~l~v~~~N~~a~~~yek-~Gf~~~~~ 188 (194)
T PRK10975 158 RGLTRLRVATQMGNLAALRLYIR-SGANIEST 188 (194)
T ss_pred cCCCEEEEEeCCCcHHHHHHHHH-CCCeEeEE
Confidence 45667777654 34689999998 99997654
No 164
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=28.28 E-value=1.6e+02 Score=24.08 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=25.5
Q ss_pred ccccEEEEEeCCHHHHHHHHHhccCCEEEEecccEE
Q 040429 55 ASFRWILQLHKDVPKAARFYSEGLDFTVNVCTLRWA 90 (168)
Q Consensus 55 ~~i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~~~~ 90 (168)
..+.|+.|.+++.. ..||++ +||......++.+
T Consensus 82 ~G~~~l~l~Tk~~~--~~fy~k-lGF~~i~~~~~~~ 114 (332)
T TIGR00124 82 LGRFHLFIFTKPEY--AALFEY-CGFKTLAEAKDQG 114 (332)
T ss_pred cCCCEEEEEECchH--HHHHHH-cCCEEeeeecceE
Confidence 46889999998644 579998 9999988765443
No 165
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=28.27 E-value=23 Score=20.72 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=15.7
Q ss_pred EEeCCHHHHHHHHHhccCC
Q 040429 62 QLHKDVPKAARFYSEGLDF 80 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf 80 (168)
++.+.+...++||++.|-|
T Consensus 35 ~~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 35 LNVKCPLLVISFYEEHLTY 53 (54)
T ss_pred HHhhCcHHHHHHHHHhccc
Confidence 4557889999999998865
No 166
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.75 E-value=1e+02 Score=22.30 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=30.5
Q ss_pred eCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 122 VTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 122 v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
-.|++...+.|++.|+++...-.-+..++.++|.--+|..+
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v~ 146 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKVI 146 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEEE
Confidence 38899999999999999876554555667776655556543
No 167
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=27.22 E-value=1e+02 Score=23.34 Aligned_cols=41 Identities=10% Similarity=-0.074 Sum_probs=31.4
Q ss_pred eCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 122 VTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 122 v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
-.|++...+.|++.|+.+...-.-+..|+.++|.--+|..+
T Consensus 114 ~rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 114 QANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 37899999999999999886555566677777766666654
No 168
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=26.35 E-value=92 Score=17.64 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=10.7
Q ss_pred EEEEECCCCCEEEE
Q 040429 151 VAAMRCIDGHMLGL 164 (168)
Q Consensus 151 ~~~~~DPdGn~iel 164 (168)
...+.||||+...|
T Consensus 30 sY~y~~pdG~~~~V 43 (52)
T PF00379_consen 30 SYSYIDPDGQTRTV 43 (52)
T ss_pred EEEEECCCCCEEEE
Confidence 34578999998766
No 169
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.05 E-value=1.1e+02 Score=23.19 Aligned_cols=43 Identities=9% Similarity=-0.037 Sum_probs=32.2
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 120 FTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 120 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
+.-.|++...+.|.+.|+.+...-.-+..|+.++|.--+|..+
T Consensus 124 IG~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v~ 166 (201)
T PRK13487 124 VGERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKVL 166 (201)
T ss_pred chHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEEE
Confidence 3447899999999999999886655566677777766566554
No 170
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=25.94 E-value=1.1e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=34.1
Q ss_pred EEEEeC-CHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEEEEEee
Q 040429 118 LSFTVT-DINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 118 ~~~~v~-dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~iel~e~ 167 (168)
++.+++ .+..+.+-|++....+..-|.....+++..|..++|..+||..+
T Consensus 161 iS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~fqn~~~y~VefLTt 211 (349)
T COG5397 161 ISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAFQNRDGYRVEFLTT 211 (349)
T ss_pred hhHHhcccccHHHHHHhccCcccccCCccCCCccceeeecCCCeEEEEecc
Confidence 444554 36667777777666665444344456777789999999999764
No 171
>TIGR01046 S10_Arc_S20_Euk ribosomal protein S10(archaeal)/S20(eukaryotic). its equivalents in eukaryotes.
Probab=25.48 E-value=2e+02 Score=19.09 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCC
Q 040429 127 SAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGH 160 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn 160 (168)
++.+.++..|+.+.||...+.-- ++...+.|.|+
T Consensus 21 ~I~~~ak~~g~~~~GPipLPtk~~~~tv~rsPh~~ 55 (99)
T TIGR01046 21 QIKRIAEKTGVRMSGPVPLPTKRLRVPTRKSPDGE 55 (99)
T ss_pred HHHHHHHHcCCEEECCccCCcceEEEEeeeCCCCC
Confidence 34456688999999887654444 56667888764
No 172
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=25.37 E-value=1.5e+02 Score=21.70 Aligned_cols=43 Identities=12% Similarity=0.021 Sum_probs=33.4
Q ss_pred EEeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 120 FTVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 120 ~~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
+.-.|++...+.|+..|+++...-.-+..|+.++|.--+|-.+
T Consensus 111 IG~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v~ 153 (164)
T COG1871 111 IGERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRVR 153 (164)
T ss_pred hhhHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcEE
Confidence 3347899999999999999987666677788888766666554
No 173
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=25.20 E-value=84 Score=22.85 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=20.6
Q ss_pred ccccEEEEEeC-CHHHHHHHHHhccCCEEEE
Q 040429 55 ASFRWILQLHK-DVPKAARFYSEGLDFTVNV 84 (168)
Q Consensus 55 ~~i~hv~l~v~-D~~~a~~FY~~vLGf~~~~ 84 (168)
..+..+.+.|. +-..|.+||++ +||+...
T Consensus 155 ~g~~~I~l~v~~~N~~A~~~Y~k-lGF~~~~ 184 (191)
T TIGR02382 155 RGLTRLRVATQMGNTAALRLYIR-SGANIES 184 (191)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHH-cCCcccc
Confidence 35666666652 33689999998 9998654
No 174
>PRK10514 putative acetyltransferase; Provisional
Probab=24.94 E-value=1.2e+02 Score=20.44 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.0
Q ss_pred HHHHHHHHHhccCCEEEEe
Q 040429 67 VPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 67 ~~~a~~FY~~vLGf~~~~~ 85 (168)
-.+|.+||++ +||+....
T Consensus 109 N~~a~~~yek-~Gf~~~~~ 126 (145)
T PRK10514 109 NEQAVGFYKK-MGFKVTGR 126 (145)
T ss_pred CHHHHHHHHH-CCCEEecc
Confidence 3589999998 99998654
No 175
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=24.83 E-value=2.9e+02 Score=20.49 Aligned_cols=76 Identities=20% Similarity=0.113 Sum_probs=49.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhccCCEEEEecc-cEEEEEeCCeEEEEEeCCCCCcccCCCeEEEEEEeCCHHH-------H
Q 040429 57 FRWILQLHKDVPKAARFYSEGLDFTVNVCTL-RWAELQSGPLKLALMQSPSDHVVQNGNSSLLSFTVTDINS-------A 128 (168)
Q Consensus 57 i~hv~l~v~D~~~a~~FY~~vLGf~~~~~~~-~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~v~dl~~-------~ 128 (168)
..-+.+.+.|++.+.+-+.. |||.....-- .-.....+...+.+-...+ .|.+.-+-..++|-++ +
T Consensus 78 r~E~E~~v~D~~~~~~il~~-LGF~~~~~VkK~R~iY~~~~~~i~lD~Veg-----LG~F~EIE~~~~d~~e~~~~~~~~ 151 (178)
T COG1437 78 REEIEIEVSDVEKALEILKR-LGFKEVAVVKKTREIYKVGNVTIELDAVEG-----LGDFLEIEVMVDDENEIDGAKEEI 151 (178)
T ss_pred eeeEEEEeCCHHHHHHHHHH-cCCceeeEEEEEEEEEeeCCEEEEEecccC-----CcccEEEEEecCCchhhHHHHHHH
Confidence 44568899999999999998 9999776532 2222344667777755543 4544444455555444 4
Q ss_pred HHHHHHCCCe
Q 040429 129 VTKLMALGAE 138 (168)
Q Consensus 129 ~~~l~~~G~~ 138 (168)
.+-+...|+.
T Consensus 152 ~~i~~~lGl~ 161 (178)
T COG1437 152 EEIARQLGLK 161 (178)
T ss_pred HHHHHHhCCC
Confidence 5556777775
No 176
>smart00300 ChSh Chromo Shadow Domain.
Probab=24.52 E-value=28 Score=20.85 Aligned_cols=20 Identities=35% Similarity=0.414 Sum_probs=16.0
Q ss_pred EEeCCHHHHHHHHHhccCCE
Q 040429 62 QLHKDVPKAARFYSEGLDFT 81 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf~ 81 (168)
++.+.+...++||++.|-|.
T Consensus 41 ~~~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 41 ANVKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHHHChHHHHHHHHHhCccC
Confidence 45568899999999988664
No 177
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=24.10 E-value=79 Score=20.33 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=13.5
Q ss_pred EEEeCCHHHHHHHHHhccCC
Q 040429 61 LQLHKDVPKAARFYSEGLDF 80 (168)
Q Consensus 61 ~l~v~D~~~a~~FY~~vLGf 80 (168)
.|.+..-..+.+||+. +||
T Consensus 99 ~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 99 RLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp EEEEEC-HHHHHHHHH-TT-
T ss_pred EEEEEeCHHHHHHHHh-CCC
Confidence 4455588889999998 887
No 178
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.50 E-value=1.7e+02 Score=17.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=19.0
Q ss_pred EEEEEeCCHHHHHHHHHHCCCeE
Q 040429 117 LLSFTVTDINSAVTKLMALGAEL 139 (168)
Q Consensus 117 ~~~~~v~dl~~~~~~l~~~G~~~ 139 (168)
.+.+.++|.+.+.+.|+++|.++
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v 64 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAV 64 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEE
Confidence 36667789889999999999875
No 179
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=23.22 E-value=1.3e+02 Score=23.37 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=31.4
Q ss_pred EeCCHHHHHHHHHHCCCeEeccceeeCCeEEEEEECCCCCEE
Q 040429 121 TVTDINSAVTKLMALGAELDGSIKYEIHGKVAAMRCIDGHML 162 (168)
Q Consensus 121 ~v~dl~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~DPdGn~i 162 (168)
.-.|++...+.|...|+.+...-.-+..|+.++|.--+|..+
T Consensus 123 G~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v~ 164 (233)
T PRK13489 123 GDRNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRAM 164 (233)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 347899999999999999886655566777776665556553
No 180
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=22.24 E-value=1.1e+02 Score=21.40 Aligned_cols=19 Identities=11% Similarity=0.268 Sum_probs=15.8
Q ss_pred eEEEEEECCCCCEEEEEee
Q 040429 149 GKVAAMRCIDGHMLGLYEP 167 (168)
Q Consensus 149 g~~~~~~DPdGn~iel~e~ 167 (168)
++..|+.|++|..+..+.+
T Consensus 120 ~~~tflID~~G~v~~~~~g 138 (153)
T TIGR02540 120 NFWKYLVNPEGQVVKFWRP 138 (153)
T ss_pred ccEEEEEcCCCcEEEEECC
Confidence 4568999999999988764
No 181
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=92 Score=23.89 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=11.5
Q ss_pred CeEEEEEECCCCCE
Q 040429 148 HGKVAAMRCIDGHM 161 (168)
Q Consensus 148 ~g~~~~~~DPdGn~ 161 (168)
.|..+|-.||+||-
T Consensus 143 ~gyqLy~SdPSGny 156 (249)
T KOG0178|consen 143 YGYQLYQSDPSGNY 156 (249)
T ss_pred cceEEEecCCCCCc
Confidence 55788899999984
No 182
>PF10033 ATG13: Autophagy-related protein 13; InterPro: IPR018731 Members of this family of phosphoproteins are involved in cytoplasm to vacuole transport (Cvt), and more specifically in Cvt vesicle formation. They are probably involved in the switching machinery regulating the conversion between the Cvt pathway and autophagy. Finally, ATG13 is also required for glycogen storage [, , ].
Probab=21.57 E-value=1.3e+02 Score=23.05 Aligned_cols=50 Identities=6% Similarity=0.053 Sum_probs=31.5
Q ss_pred EEEEEeCCHHHHHHHHHHCCC-----eEeccce--------eeCCeEEEEEECCCCCEEEEEe
Q 040429 117 LLSFTVTDINSAVTKLMALGA-----ELDGSIK--------YEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 117 ~~~~~v~dl~~~~~~l~~~G~-----~~~~~~~--------~~~~g~~~~~~DPdGn~iel~e 166 (168)
.+.++++|.+++.+.++..-. ....|.. .-..+..+.+.|.+|+.|.+.+
T Consensus 38 WFNL~~~e~~~~~~~l~~w~~~~~~~~~~pPlvIei~Ld~~~l~~~~~l~l~d~~g~~~~v~~ 100 (233)
T PF10033_consen 38 WFNLEIDESDELREELKRWRSCSDLESRLPPLVIEIYLDTRQLSSNQSLVLKDDDGKRWDVCK 100 (233)
T ss_pred cEeecCCCcHHHHHHHHHhhhcccccCCCCCEEEEEEEecCCCCCCCceEecCCCCceeeecc
Confidence 488888998888776643222 1011111 1224467788999999998865
No 183
>PRK12271 rps10p 30S ribosomal protein S10P; Reviewed
Probab=21.33 E-value=2.5e+02 Score=18.68 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=23.8
Q ss_pred HHHHHHHHCCCeEeccceeeCCe-EEEEEECCCCC
Q 040429 127 SAVTKLMALGAELDGSIKYEIHG-KVAAMRCIDGH 160 (168)
Q Consensus 127 ~~~~~l~~~G~~~~~~~~~~~~g-~~~~~~DPdGn 160 (168)
++.+.++..|+.+.||..-+.-- .+...+.|.|+
T Consensus 22 ~I~~~~k~~g~~~~GPipLPtk~~~~tv~rSPh~~ 56 (102)
T PRK12271 22 QIKEIAEKTGVDMSGPIPLPTKRLVVPTRKSPDGE 56 (102)
T ss_pred HHHHHHHHcCCeEECCCcCCceeEEEEeeeCCCCC
Confidence 34556788999999887644444 56677888765
No 184
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=21.30 E-value=1.1e+02 Score=20.84 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=22.3
Q ss_pred ccccEEEE-EeCCHHHHHHHHHhccCCEEEEecc
Q 040429 55 ASFRWILQ-LHKDVPKAARFYSEGLDFTVNVCTL 87 (168)
Q Consensus 55 ~~i~hv~l-~v~D~~~a~~FY~~vLGf~~~~~~~ 87 (168)
..+..+.+ ..++=..+++||+. |||+......
T Consensus 109 ~~~~~i~~~v~~~N~~~i~~~~~-~GF~~~g~~~ 141 (155)
T PF13420_consen 109 LGIHKIYLEVFSSNEKAINFYKK-LGFEEEGELK 141 (155)
T ss_dssp TT-CEEEEEEETT-HHHHHHHHH-TTEEEEEEEE
T ss_pred cCeEEEEEEEecCCHHHHHHHHh-CCCEEEEEEe
Confidence 45556654 34567889999999 9999887643
No 185
>PRK10314 putative acyltransferase; Provisional
Probab=21.23 E-value=89 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=17.1
Q ss_pred EEEEEeCCHHHHHHHHHhccCCEEEEe
Q 040429 59 WILQLHKDVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 59 hv~l~v~D~~~a~~FY~~vLGf~~~~~ 85 (168)
.+.|.+ -..+..||++ +||.....
T Consensus 111 ~i~L~a--~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 111 PVYLGA--QAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred cEEEeh--HHHHHHHHHH-CCCEECCC
Confidence 344544 3567899999 99997664
No 186
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=21.15 E-value=1.3e+02 Score=23.25 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=20.6
Q ss_pred cccEEEEEeC-CHHHHHHHHHhccCCEEEEe
Q 040429 56 SFRWILQLHK-DVPKAARFYSEGLDFTVNVC 85 (168)
Q Consensus 56 ~i~hv~l~v~-D~~~a~~FY~~vLGf~~~~~ 85 (168)
.+..+.+.|. +-..+.+||++ +||+....
T Consensus 259 g~~~v~l~v~~~N~~a~~~y~k-~GF~~~~~ 288 (292)
T TIGR03448 259 GLPAVMLYVEADNEAAVRTYEK-LGFTVAEV 288 (292)
T ss_pred CCCEEEEEEeCCCHHHHHHHHH-cCCEEccc
Confidence 4556666553 33689999998 99987653
No 187
>PF04659 Arch_fla_DE: Archaeal flagella protein ; InterPro: IPR006752 Archaeal flagella are unique motility structures, and the absence of bacterial structural motility genes in the complete genome sequences of flagellated archaeal species has always suggested that archaeal flagellar biogenesis is likely mediated by novel components. FlaD and FlaE, are present in the cell as membrane-associated proteins but are not major components of isolated flagellar filaments. Interestingly, flaD was found to encode two proteins, each translated from a separate ribosome binding site. This group of sequences contain the archaeal flaD and flaE proteins. The conserved region that defines these sequences is found in the N-teminal region of flaE but towards the C-terminal region of flaD [].; GO: 0001539 ciliary or flagellar motility
Probab=21.00 E-value=77 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=16.6
Q ss_pred EEeCCHHHHHHHHHhccCCE
Q 040429 62 QLHKDVPKAARFYSEGLDFT 81 (168)
Q Consensus 62 l~v~D~~~a~~FY~~vLGf~ 81 (168)
....++..+.+||.+ +||=
T Consensus 32 ~G~~~~~~~L~YY~~-igWI 50 (99)
T PF04659_consen 32 VGHNNAADALDYYES-IGWI 50 (99)
T ss_pred cccccHHHHHHHHHH-cCCc
Confidence 567899999999999 8984
No 188
>PRK03467 hypothetical protein; Provisional
Probab=20.86 E-value=2.9e+02 Score=19.76 Aligned_cols=44 Identities=7% Similarity=-0.176 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHCCCeEe--ccceeeCCeEEEEEECCCCCEEEEEe
Q 040429 123 TDINSAVTKLMALGAELD--GSIKYEIHGKVAAMRCIDGHMLGLYE 166 (168)
Q Consensus 123 ~dl~~~~~~l~~~G~~~~--~~~~~~~~g~~~~~~DPdGn~iel~e 166 (168)
+++..+.+-|+++-+--. ......|....+|+.|+++..+-|..
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S 50 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLT 50 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEc
Confidence 456667777766655422 22223334478889999999887653
No 189
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=20.32 E-value=69 Score=18.99 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=14.6
Q ss_pred EeCCHHHHHHHHHhccCCE
Q 040429 63 LHKDVPKAARFYSEGLDFT 81 (168)
Q Consensus 63 ~v~D~~~a~~FY~~vLGf~ 81 (168)
+.+-+...++||++.|-|+
T Consensus 39 ~~k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 39 NEKCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HHHSHHHHHHHHHHTCEEE
T ss_pred HHHCcHHHHHHHHHHeeec
Confidence 3456788999999988664
Done!