BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040431
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QYC|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYC|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 308
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 68/94 (72%), Gaps = 1/94 (1%)
Query: 1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPS-KSQLLDHFKNLGVNL 59
M S+S+IL IG TGYIG+ +AS+ GHPTF+LVREST S S K+QLL+ FK G N+
Sbjct: 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANI 60
Query: 60 VIGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
V G + +H SLV+A+K VDVVISTVG + QV
Sbjct: 61 VHGSIDDHASLVEAVKNVDVVISTVGSLQIESQV 94
>pdb|2GAS|A Chain A, Crystal Structure Of Isoflavone Reductase
pdb|2GAS|B Chain B, Crystal Structure Of Isoflavone Reductase
Length = 307
Score = 95.1 bits (235), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 72/93 (77%), Gaps = 2/93 (2%)
Query: 3 SKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRES-TISGP-SKSQLLDHFKNLGVNLV 60
+++KIL +G TG IG+ V AS+KAG+PT+ LVR++ T + P +K +L+D++++LGV L+
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
GD+ +HE+LVKAIKQVD+VI G L+ DQV
Sbjct: 61 EGDINDHETLVKAIKQVDIVICAAGRLLIEDQV 93
>pdb|1QYD|A Chain A, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|B Chain B, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|C Chain C, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
pdb|1QYD|D Chain D, Crystal Structures Of Pinoresinol-Lariciresinol And
Phenylcoumaran Benzylic Ether Reductases, And Their
Relationship To Isoflavone Reductases
Length = 313
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 61/93 (65%)
Query: 1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
M KS++L +GGTGYIGK V AS+ GHPT+VL R +S K Q+L +FK LG L+
Sbjct: 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 60
Query: 61 IGDVLNHESLVKAIKQVDVVISTVGHTLLADQV 93
+ +H+ LV A+KQVDVVIS + +L+ +
Sbjct: 61 EASLDDHQRLVDALKQVDVVISALAGGVLSHHI 93
>pdb|3C1O|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 321
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 5 SKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTI-SGPSKSQLLDHFKNLGVNLVIGD 63
KI+ GGTGYIGKF V AS+ HPTF+ R T S PS QL + F+++GV ++ G+
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQV 93
+ HE +V +KQVD+VIS + +++ Q+
Sbjct: 65 MEEHEKMVSVLKQVDIVISALPFPMISSQI 94
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
KSKIL GGTGYIG V+ S+K GHPT+V R ++ SK+ LLD F++LG +V G+
Sbjct: 7 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 62
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
+ HE LV+ +K+VDVVIS + + DQ
Sbjct: 63 LDEHEKLVELMKKVDVVISALAFPQILDQ 91
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
KSKIL GGTGYIG V+ S+K GHPT+V R ++ SK+ LLD F++LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
+ HE LV+ +K+VDVVIS + + DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQ 95
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
KSKIL GGTGYIG V+ S+K GHPT+V R ++ SK+ LLD F++LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
+ HE LV+ +K+VDVVIS + + DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAFPQILDQ 95
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 82.4 bits (202), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGD 63
KSKIL GGTGYIG V+ S+K GHPT+V R ++ SK+ LLD F++LG +V G+
Sbjct: 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNS----SKTTLLDEFQSLGAIIVKGE 66
Query: 64 VLNHESLVKAIKQVDVVISTVGHTLLADQ 92
+ HE LV+ +K+VDVVIS + DQ
Sbjct: 67 LDEHEKLVELMKKVDVVISALAVPQYLDQ 95
>pdb|3I52|A Chain A, Ternary Complex Structure Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I5M|A Chain A, Structure Of The Apo Form Of Leucoanthocyanidin Reductase
From Vitis Vinifera
pdb|3I6I|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase - Nadph From Vitis Vinifera
pdb|3I6Q|A Chain A, Structure Of The Binary Complex Leucoanthocyanidin
Reductase-Nadph From Vitis Vinifera
Length = 346
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 2 ASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
+ K ++L G TG+IG+F AS+ A PT++L R S PSK+++ ++ G +V
Sbjct: 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS-PSKAKIFKALEDKGAIIVY 66
Query: 62 GDVLNHESLVKAIK--QVDVVISTVGHTLLADQV 93
G + E++ K +K ++D+V+STVG + DQ+
Sbjct: 67 GLINEQEAMEKILKEHEIDIVVSTVGGESILDQI 100
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN
IV Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME
TERNARY Complex
Length = 206
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLV 60
MA K KI G TG G T+ +V+AG+ VLVR+S+ PS+ H +V
Sbjct: 1 MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS-RLPSEGPRPAH-------VV 51
Query: 61 IGDVLNHESLVKAIKQVDVVISTVG 85
+GDVL + K + D VI +G
Sbjct: 52 VGDVLQAADVDKTVAGQDAVIVLLG 76
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
Query: 1 MASKSKILFIGGTGYIGKFTVEASVKAGHPTFVLV--RESTISGPSKSQLLDHFKNLGVN 58
M IL GGTG GK V + + ++V R+ +S++ F + +
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL----KQSEMAMEFNDPRMR 73
Query: 59 LVIGDVLNHESLVKAIKQVDVVI--STVGHTLLADQVXXXXXXXXXXGAS 106
IGDV + E L A++ VD+ I + + H +A+ GAS
Sbjct: 74 FFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGAS 123
>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose
4-Epimerase Mutant Y299c Complexed With
Udp-N-Acetylglucosamine
pdb|1LRL|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Mutant
Y299c Complexed With Udp-Glucose
Length = 338
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|2UDP|B Chain B, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
pdb|1UDC|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-Mannose
Length = 338
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase
Complexed With Udp-N-Acetylglucosamine
pdb|1NAH|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
pdb|1NAI|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli,
Oxidized
pdb|1UDA|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Galactose
pdb|1UDB|A Chain A, Structure Of Udp-Galactose-4-Epimerase Complexed With
Udp-4-Deoxy-4- Fluoro-Alpha-D-Glucose
pdb|1XEL|A Chain A, Udp-Galactose 4-Epimerase From Escherichia Coli
Length = 338
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Glucose
Length = 338
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
Length = 338
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
WITH UDP- Galactose
Length = 338
Score = 30.4 bits (67), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG---VNLVIG 62
++L GG+GYIG T ++ GH +L SK +L + LG V G
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----SKRSVLPVIERLGGKHPTFVEG 57
Query: 63 DVLNHESLVKAIKQVDVVISTVGH 86
D+ N E+L+ I D I TV H
Sbjct: 58 DIRN-EALMTEILH-DHAIDTVIH 79
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
K +G TG +G A AGH ++ R S S+ Q L + + + ++L
Sbjct: 15 KYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-----SQIQRLAYLEP---ECRVAEML 66
Query: 66 NHESLVKAIKQVDVVISTVGH 86
+H L +A++ +D VI + G+
Sbjct: 67 DHAGLERALRGLDGVIFSAGY 87
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 24 SVKAGHPTFVLV---RESTISGPSKSQLLDHFKNLGVNLVIGD 63
S+++G P VLV RE ++GP + L + G +VIGD
Sbjct: 1627 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 1669
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 24 SVKAGHPTFVLV---RESTISGPSKSQLLDHFKNLGVNLVIGD 63
S+++G P VLV RE ++GP + L + G +VIGD
Sbjct: 1627 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 1669
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTIS-GPSKSQLLDHFKNLGVNLVIGDV 64
K+L GG G+IG + ++ HP + ++ + G + + L D + V GDV
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEK-HPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDV 63
Query: 65 LNHESLVKAIKQVDVVI 81
++E + + +++VD V+
Sbjct: 64 ADYELVKELVRKVDGVV 80
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVR 36
KI GGTG++G++ VE+ G+ +L R
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTR 34
>pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS.
Northeast Structural Genomics Target Hr1979
Length = 339
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 24 SVKAGHPTFVLV---RESTISGPSKSQLLDHFKNLGVNLVIGD 63
S+++G P VLV RE ++GP + L + G +VIGD
Sbjct: 231 SIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGD 273
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose
4,6-Dehydratase) From Streptomyces Venezuelae With Nad
And Tyd Bound
Length = 337
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTF----VLVRESTISGPSKSQLLDHFKNLGVNLVI 61
++L GG G+IG V + +P V+V +S +++ L + + V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVKAIKQVDVVI 81
GD+ + L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTF----VLVRESTISGPSKSQLLDHFKNLGVNLVI 61
++L GG G+IG V + +P V+V +S +++ L + + V
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 62 GDVLNHESLVKAIKQVDVVI 81
GD+ + L + ++ VD ++
Sbjct: 62 GDIRDAGLLARELRGVDAIV 81
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 9 FIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
+G TG FTV +K PT V+ T++G S+ + F N V +
Sbjct: 43 LLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFV 96
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent
Atp-Ase Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal
Structure Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 27.3 bits (59), Expect = 3.2, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 9 FIGGTGYIGKFTVEASVK-AGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVI 61
+G TG FTV +K PT V+ T++G S+ + F N V +
Sbjct: 37 LLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFV 90
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 50 DHFKNLGVNLVIGDVLNHESLVKAIKQ 76
DHF+++GV++VI N + V AI+Q
Sbjct: 225 DHFRDMGVSMVIWANHNLRASVSAIQQ 251
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL 34
K+L GG GYIG TV ++AG+ V+
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI 32
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL 34
K+L GG GYIG TV ++AG+ V+
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI 32
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 50 DHFKNLGVNLVIGDVLNHESLVKAIKQ 76
DHF+++GV++VI N + V AI+Q
Sbjct: 225 DHFRDMGVSMVIWANHNLRASVSAIQQ 251
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 5 SKILFIGGTGYIGKFTVEASVKAGHPTFVL 34
K+L GG GYIG TV ++AG+ V+
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVI 32
>pdb|3T95|A Chain A, Crystal Structure Of Lsrb From Yersinia Pestis Complexed
With Autoinducer-2
Length = 335
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 5 SKILFIGGTGYIGKFTV--EASVKAGHPTFVLVRESTISGPSKS---QLLDHFKNLGVNL 59
+I FI +G FT + +V AG V V + PS S QL+++F N G N
Sbjct: 23 ERIAFIPKLVGVGFFTSGGKGAVDAGKALGVDVTYDGPTEPSVSGQVQLINNFVNQGYNA 82
Query: 60 VIGDVLNHESLVKAIKQ 76
++ ++ + L A+K+
Sbjct: 83 IVVSAVSPDGLCPALKR 99
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 7 ILFIGGTGYIGKFTVEASVKAGHPTFVLV-----RESTISGPSKSQLLDHFKNL 55
IL GG G++G + + HP +V R +T+ ++ L HFKNL
Sbjct: 13 ILITGGAGFVGS-NLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL 65
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 18 KFTVEASVKAGHPTFVLVRES--TISGPSKSQLLDHFKNLGVNLVIGDVLNHESLVKAIK 75
+F E V+A ++ E T+S ++++ + GV+LV+G +H+ +V+ ++
Sbjct: 75 QFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLR 134
Query: 76 QV 77
+
Sbjct: 135 AI 136
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium
With Thymidine Diphosphate Bound
Length = 361
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 6 KILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLGVNLVIGDVL 65
KIL GG G+IG V +K T V + + T +G +S L D ++ N D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES-LSDISESNRYNFEHADIC 60
Query: 66 NHESLVKAIKQ 76
+ + + +Q
Sbjct: 61 DSAEITRIFEQ 71
>pdb|2ETV|A Chain A, Crystal Structure Of A Putative Fe(Iii) Abc Transporter
(Tm0189) From Thermotoga Maritima Msb8 At 1.70 A
Resolution
pdb|2ETV|B Chain B, Crystal Structure Of A Putative Fe(Iii) Abc Transporter
(Tm0189) From Thermotoga Maritima Msb8 At 1.70 A
Resolution
Length = 346
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLV 35
+S +++GG GY G ++ S +A +P FV++
Sbjct: 176 ESPTVYVGGIGYXGAHGID-STEAXYPPFVVL 206
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 4 KSKILFIGGTGYIGKFTVEASVKAGHPTFVLVRESTISGPSKSQLLDHFKNLG-----VN 58
K ++ GGTG++G + +++ ++ G+ +R + P + + + NL ++
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR----ADPERKRDVSFLTNLPGASEKLH 56
Query: 59 LVIGDVLNHESLVKAIK 75
D+ N +S AI+
Sbjct: 57 FFNADLSNPDSFAAAIE 73
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 3 SKSKILFI-GGTGYIGKFTVEASVKAGHPTFV 33
S SKI+ + GG GYIG TV ++ G+ V
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVV 40
>pdb|3EJW|A Chain A, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
pdb|3EJW|B Chain B, Crystal Structure Of The Sinorhizobium Meliloti Ai-2
Receptor, Smlsrb
Length = 315
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 4 KSKILFIGGTGYIGKFTV--EASVKAGHP-----TFVLVRESTISGPSKSQLLDHFKNLG 56
+++I FI +G FT +VKAG T+ E ++SG + Q +++F N G
Sbjct: 1 ENQIAFIPKLVGVGFFTSGGAGAVKAGEEVGAKVTYDGPTEPSVSG--QVQFINNFVNQG 58
Query: 57 VNLVIGDVLNHESLVKAIKQ 76
N +I ++ + L A+K+
Sbjct: 59 YNALIVSSVSPDGLCPALKR 78
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 1 MASKSKILFIGGTGYIGKFTV 21
M++K IL GG GYIG T
Sbjct: 2 MSTKGTILVTGGAGYIGSHTA 22
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,287,652
Number of Sequences: 62578
Number of extensions: 96748
Number of successful extensions: 402
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 56
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)