BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040434
(141 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68
+L+++SDLD T V G+ +L + R + L ++TGRS ++L+K+ L
Sbjct: 3 QLLLISDLDNTWV----GDQQALEHLQE-YLGDRRGNFYLAYATGRSYHSARELQKQVGL 57
Query: 69 LTPDITIMSVGTEIVYGESMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKW 128
+ PD + +VG+EI + E + D W +YL+ W R I+ F L Q L + W
Sbjct: 58 MEPDYWLTAVGSEIYHPEGL--DQHWADYLSEHWQRDILQAIADGFEALKPQSPLEQNPW 115
Query: 129 MV 130
+
Sbjct: 116 KI 117
>pdb|1K7S|N Chain N, Fhud Complexed With Albomycin-Delta 2
Length = 265
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEA 40
RL D+D+ DHD+ +++ L LW+A
Sbjct: 195 RLAAYKDVDVLCFDHDNSKDMDALMATPLWQA 226
>pdb|1ESZ|A Chain A, Structure Of The Periplasmic Ferric Siderophore Binding
Protein Fhud Complexed With Coprogen
pdb|1K2V|N Chain N, E. Coli Periplasmic Protein Fhud Complexed With Desferal
Length = 266
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEA 40
RL D+D+ DHD+ +++ L LW+A
Sbjct: 196 RLAAYKDVDVLCFDHDNSKDMDALMATPLWQA 227
>pdb|1EFD|N Chain N, Periplasmic Ferric Siderophore Binding Protein Fhud
Complexed With Gallichrome
Length = 266
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEA 40
RL D+D+ DHD+ +++ L LW+A
Sbjct: 196 RLAAYKDVDVLCFDHDNSKDMDALMATPLWQA 227
>pdb|1KMP|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Complexed With Ferric Citrate
Length = 774
Score = 25.8 bits (55), Expect = 7.9, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 23 HDDG-----ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMS 77
+DDG L L+ FN ++++ D++ R + Q R + LTP + +S
Sbjct: 579 YDDGALTAEXGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVS 638
Query: 78 VGTEIVYGESMVHDDG 93
+ Y + + + G
Sbjct: 639 IYASYAYVNAEIREKG 654
>pdb|1KMO|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Length = 774
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 23 HDDGE-----NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMS 77
+DDG L L+ FN ++++ D++ R + Q R + LTP + +S
Sbjct: 579 YDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVS 638
Query: 78 VGTEIVYGESMVHDDG 93
+ Y + + + G
Sbjct: 639 IYASYAYVNAEIREKG 654
>pdb|1PNZ|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
The Unliganded Form
pdb|1PO0|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
Complex With Iron-Free Citrate
pdb|1PO3|A Chain A, Crystal Structure Of Ferric Citrate Transporter Feca In
Complex With Ferric Citrate
pdb|1PO3|B Chain B, Crystal Structure Of Ferric Citrate Transporter Feca In
Complex With Ferric Citrate
Length = 751
Score = 25.8 bits (55), Expect = 9.2, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 23 HDDGE-----NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMS 77
+DDG L L+ FN ++++ D++ R + Q R + LTP + +S
Sbjct: 556 YDDGALTAEMGLFLINFNNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVS 615
Query: 78 VGTEIVYGESMVHDDG 93
+ Y + + + G
Sbjct: 616 IYASYAYVNAEIREKG 631
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,281,190
Number of Sequences: 62578
Number of extensions: 163960
Number of successful extensions: 309
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 9
length of query: 141
length of database: 14,973,337
effective HSP length: 89
effective length of query: 52
effective length of database: 9,403,895
effective search space: 489002540
effective search space used: 489002540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)