Query 040434
Match_columns 141
No_of_seqs 159 out of 1607
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:23:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05116 S6PP: Sucrose-6F-phos 99.9 2.9E-26 6.3E-31 178.0 11.2 125 8-136 1-128 (247)
2 PLN02382 probable sucrose-phos 99.9 7E-24 1.5E-28 175.4 15.9 129 1-129 1-129 (413)
3 TIGR01485 SPP_plant-cyano sucr 99.9 2.8E-22 6.2E-27 155.0 15.0 124 9-132 1-124 (249)
4 TIGR02471 sucr_syn_bact_C sucr 99.8 1.3E-19 2.9E-24 138.8 13.7 114 11-129 1-114 (236)
5 PRK10513 sugar phosphate phosp 99.8 1.7E-18 3.6E-23 134.6 11.4 74 7-84 1-76 (270)
6 PRK10530 pyridoxal phosphate ( 99.8 2E-18 4.3E-23 133.9 10.2 94 7-114 1-97 (272)
7 PTZ00174 phosphomannomutase; P 99.8 2.7E-18 5.7E-23 133.0 8.8 77 7-87 3-80 (247)
8 PRK10976 putative hydrolase; P 99.8 9.6E-18 2.1E-22 130.2 10.9 92 9-114 2-95 (266)
9 COG0561 Cof Predicted hydrolas 99.7 7.7E-18 1.7E-22 130.8 10.2 94 7-114 1-95 (264)
10 PRK15126 thiamin pyrimidine py 99.7 1.7E-17 3.8E-22 129.4 11.4 92 9-114 2-95 (272)
11 PRK03669 mannosyl-3-phosphogly 99.7 5.8E-17 1.3E-21 126.8 10.4 74 7-85 5-79 (271)
12 PRK01158 phosphoglycolate phos 99.7 8.4E-17 1.8E-21 122.2 8.8 72 8-85 2-74 (230)
13 PRK12702 mannosyl-3-phosphogly 99.7 2.1E-16 4.4E-21 125.3 9.3 72 9-86 1-73 (302)
14 TIGR00099 Cof-subfamily Cof su 99.7 3.7E-16 8.1E-21 120.8 10.0 90 11-114 1-92 (256)
15 TIGR02468 sucrsPsyn_pln sucros 99.7 5.1E-16 1.1E-20 139.3 12.0 118 9-131 770-913 (1050)
16 TIGR01487 SPP-like sucrose-pho 99.6 7.1E-16 1.5E-20 116.5 8.4 72 9-86 1-73 (215)
17 TIGR02463 MPGP_rel mannosyl-3- 99.6 5.8E-16 1.3E-20 117.3 7.8 70 11-85 1-71 (221)
18 TIGR01482 SPP-subfamily Sucros 99.6 6.8E-16 1.5E-20 116.7 8.1 69 12-86 1-70 (225)
19 PRK00192 mannosyl-3-phosphogly 99.6 1.4E-15 3.1E-20 119.0 10.1 74 7-86 2-76 (273)
20 PF08282 Hydrolase_3: haloacid 99.6 1.3E-15 2.8E-20 115.0 8.8 89 12-114 1-91 (254)
21 TIGR02461 osmo_MPG_phos mannos 99.6 2.3E-15 5.1E-20 115.4 10.2 99 11-115 1-106 (225)
22 TIGR01486 HAD-SF-IIB-MPGP mann 99.6 2.2E-15 4.8E-20 116.8 9.9 95 11-113 1-97 (256)
23 PLN02887 hydrolase family prot 99.6 1.8E-15 3.8E-20 129.8 8.4 98 4-113 303-409 (580)
24 PRK14502 bifunctional mannosyl 99.6 9.9E-15 2.1E-19 126.2 10.4 105 4-114 411-523 (694)
25 PLN02423 phosphomannomutase 99.6 1.2E-14 2.6E-19 112.8 8.9 97 8-113 6-103 (245)
26 TIGR01484 HAD-SF-IIB HAD-super 99.5 1.7E-13 3.6E-18 102.5 7.8 69 11-87 1-71 (204)
27 PRK10187 trehalose-6-phosphate 99.4 9.2E-13 2E-17 103.4 8.6 69 9-85 14-89 (266)
28 smart00775 LNS2 LNS2 domain. T 99.3 1.2E-11 2.6E-16 90.3 8.4 94 11-115 1-115 (157)
29 PLN03017 trehalose-phosphatase 99.2 1.7E-10 3.6E-15 94.3 11.0 71 5-84 107-183 (366)
30 PRK14501 putative bifunctional 99.1 5.7E-11 1.2E-15 104.5 5.6 77 5-85 488-567 (726)
31 TIGR01689 EcbF-BcbF capsule bi 99.1 8.6E-10 1.9E-14 77.9 9.7 62 10-75 2-85 (126)
32 TIGR01684 viral_ppase viral ph 99.1 4.5E-10 9.7E-15 89.3 8.2 81 3-84 120-201 (301)
33 COG3769 Predicted hydrolase (H 99.1 8.2E-10 1.8E-14 84.4 8.7 75 7-86 5-79 (274)
34 TIGR00685 T6PP trehalose-phosp 99.0 3.4E-09 7.3E-14 81.9 8.3 72 7-86 1-79 (244)
35 PLN02205 alpha,alpha-trehalose 99.0 3.7E-09 8.1E-14 94.6 9.5 75 5-86 592-671 (854)
36 PLN02151 trehalose-phosphatase 98.9 7.8E-09 1.7E-13 84.3 10.1 71 5-84 94-170 (354)
37 PHA03398 viral phosphatase sup 98.9 4.5E-09 9.8E-14 83.6 7.3 79 5-84 124-203 (303)
38 COG1877 OtsB Trehalose-6-phosp 98.9 1.5E-08 3.2E-13 79.8 9.6 113 4-122 13-132 (266)
39 TIGR01457 HAD-SF-IIA-hyp2 HAD- 98.8 5.1E-09 1.1E-13 81.3 5.6 69 10-82 2-74 (249)
40 PLN02580 trehalose-phosphatase 98.8 4.6E-08 9.9E-13 80.6 8.9 76 4-84 114-191 (384)
41 cd01427 HAD_like Haloacid deha 98.6 9.8E-08 2.1E-12 64.9 5.9 74 11-84 1-80 (139)
42 PLN03063 alpha,alpha-trehalose 98.6 3.1E-07 6.7E-12 82.0 10.0 111 5-124 503-626 (797)
43 PF02358 Trehalose_PPase: Treh 98.6 1.2E-07 2.7E-12 72.7 6.4 71 13-87 1-74 (235)
44 PLN03064 alpha,alpha-trehalose 98.6 4.5E-07 9.7E-12 81.8 10.1 112 4-124 586-716 (934)
45 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.5 1E-07 2.3E-12 74.3 4.6 64 10-77 2-73 (257)
46 PRK09484 3-deoxy-D-manno-octul 98.5 1.1E-07 2.4E-12 70.6 4.1 61 8-69 20-88 (183)
47 TIGR01681 HAD-SF-IIIC HAD-supe 98.5 3.3E-07 7.1E-12 64.4 6.1 58 10-67 1-68 (128)
48 TIGR01664 DNA-3'-Pase DNA 3'-p 98.4 5.8E-07 1.3E-11 66.0 6.4 75 3-78 7-102 (166)
49 PLN02645 phosphoglycolate phos 98.4 5.5E-07 1.2E-11 72.1 6.7 66 8-77 27-96 (311)
50 PRK10444 UMP phosphatase; Prov 98.4 6.1E-07 1.3E-11 69.9 6.1 65 9-77 1-69 (248)
51 TIGR01672 AphA HAD superfamily 98.3 2.9E-06 6.3E-11 65.9 8.4 67 3-69 57-158 (237)
52 TIGR01670 YrbI-phosphatas 3-de 98.3 7.2E-07 1.6E-11 64.5 4.2 60 9-69 1-68 (154)
53 TIGR01452 PGP_euk phosphoglyco 98.2 3.2E-06 6.9E-11 66.5 6.7 64 9-76 2-69 (279)
54 TIGR01662 HAD-SF-IIIA HAD-supe 98.2 2E-06 4.3E-11 60.0 4.3 60 10-69 1-73 (132)
55 PF13344 Hydrolase_6: Haloacid 98.1 8.2E-06 1.8E-10 55.2 5.2 61 12-76 1-65 (101)
56 PF08235 LNS2: LNS2 (Lipin/Ned 98.0 3.3E-05 7.1E-10 56.5 7.3 55 11-66 1-67 (157)
57 TIGR01675 plant-AP plant acid 98.0 3.2E-05 7E-10 59.8 7.3 69 7-75 75-169 (229)
58 TIGR01460 HAD-SF-IIA Haloacid 98.0 1.8E-05 4E-10 60.9 5.9 62 12-77 1-67 (236)
59 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.8 6.8E-05 1.5E-09 57.7 7.0 66 8-77 7-76 (242)
60 PHA02530 pseT polynucleotide k 97.7 4.6E-05 1E-09 60.1 4.7 71 8-78 157-238 (300)
61 TIGR01656 Histidinol-ppas hist 97.7 8.5E-05 1.8E-09 53.0 5.6 60 10-69 1-82 (147)
62 COG1778 Low specificity phosph 97.7 2.8E-05 6E-10 56.8 3.1 63 7-69 6-75 (170)
63 PRK11009 aphA acid phosphatase 97.7 0.00014 3.1E-09 56.4 7.1 66 4-69 58-158 (237)
64 TIGR02726 phenyl_P_delta pheny 97.7 9.4E-05 2E-09 54.6 5.8 63 1-69 1-74 (169)
65 TIGR01685 MDP-1 magnesium-depe 97.6 0.00014 3.1E-09 53.9 5.9 61 9-69 2-86 (174)
66 PRK08238 hypothetical protein; 97.6 0.00043 9.3E-09 58.8 9.1 45 35-81 78-122 (479)
67 TIGR00213 GmhB_yaeD D,D-heptos 97.6 0.0004 8.6E-09 50.9 7.7 46 10-55 2-52 (176)
68 PRK11587 putative phosphatase; 97.6 0.00045 9.8E-09 52.1 8.0 40 37-76 91-130 (218)
69 PRK08942 D,D-heptose 1,7-bisph 97.6 0.00048 1E-08 50.6 7.7 48 8-55 2-55 (181)
70 TIGR01533 lipo_e_P4 5'-nucleot 97.5 0.00038 8.3E-09 54.9 7.3 72 7-78 73-172 (266)
71 PRK14988 GMP/IMP nucleotidase; 97.5 0.00071 1.5E-08 51.6 8.1 40 38-77 102-142 (224)
72 COG0546 Gph Predicted phosphat 97.5 0.001 2.3E-08 50.5 8.8 40 37-76 97-137 (220)
73 TIGR01422 phosphonatase phosph 97.5 0.00077 1.7E-08 51.9 8.2 41 37-77 107-149 (253)
74 PF05152 DUF705: Protein of un 97.5 0.00074 1.6E-08 53.7 7.9 76 4-81 117-194 (297)
75 TIGR01668 YqeG_hyp_ppase HAD s 97.4 0.00045 9.9E-09 50.6 6.1 60 7-68 23-83 (170)
76 TIGR01686 FkbH FkbH-like domai 97.4 0.00054 1.2E-08 55.1 7.0 58 8-65 2-67 (320)
77 PLN02954 phosphoserine phospha 97.4 0.00076 1.6E-08 50.8 7.5 33 37-69 92-124 (224)
78 smart00577 CPDc catalytic doma 97.4 0.0006 1.3E-08 48.8 6.2 60 9-69 2-84 (148)
79 PRK09552 mtnX 2-hydroxy-3-keto 97.3 0.0014 3E-08 49.6 8.1 32 37-69 82-113 (219)
80 TIGR02253 CTE7 HAD superfamily 97.3 0.0019 4.2E-08 48.3 8.5 41 37-77 102-143 (221)
81 COG2179 Predicted hydrolase of 97.3 0.00094 2E-08 49.3 6.4 61 7-69 26-86 (175)
82 KOG3189 Phosphomannomutase [Li 97.3 0.0011 2.4E-08 50.5 6.8 86 7-96 9-94 (252)
83 PRK13478 phosphonoacetaldehyde 97.3 0.0016 3.4E-08 50.7 8.0 41 37-77 109-151 (267)
84 COG0647 NagD Predicted sugar p 97.3 0.00075 1.6E-08 53.4 6.1 67 7-77 6-77 (269)
85 TIGR01663 PNK-3'Pase polynucle 97.2 0.0013 2.8E-08 56.6 7.6 69 8-77 167-256 (526)
86 TIGR01456 CECR5 HAD-superfamil 97.1 0.0015 3.3E-08 52.6 6.8 55 11-69 2-64 (321)
87 PRK06769 hypothetical protein; 97.1 0.0013 2.7E-08 48.4 5.2 68 7-76 2-81 (173)
88 TIGR01680 Veg_Stor_Prot vegeta 97.0 0.0023 5.1E-08 50.7 6.6 69 8-76 100-195 (275)
89 KOG2116 Protein involved in pl 96.9 0.0021 4.5E-08 56.1 5.8 101 8-115 529-646 (738)
90 TIGR01261 hisB_Nterm histidino 96.9 0.0049 1.1E-07 45.0 6.9 62 10-72 2-86 (161)
91 PF08645 PNK3P: Polynucleotide 96.8 0.00064 1.4E-08 49.6 1.5 39 10-52 1-52 (159)
92 TIGR01549 HAD-SF-IA-v1 haloaci 96.7 0.0033 7.2E-08 44.4 5.0 31 36-66 71-101 (154)
93 PRK13582 thrH phosphoserine ph 96.7 0.0038 8.3E-08 46.2 5.5 33 36-69 75-107 (205)
94 PTZ00445 p36-lilke protein; Pr 96.7 0.0014 3E-08 50.2 3.0 53 6-58 40-104 (219)
95 COG0560 SerB Phosphoserine pho 96.7 0.0042 9.1E-08 47.3 5.3 33 37-69 85-117 (212)
96 PF12689 Acid_PPase: Acid Phos 96.6 0.0057 1.2E-07 45.2 5.7 61 9-69 3-86 (169)
97 PRK05446 imidazole glycerol-ph 96.5 0.0063 1.4E-07 50.0 5.9 69 8-76 1-92 (354)
98 PF03767 Acid_phosphat_B: HAD 96.5 0.00047 1E-08 53.2 -1.1 63 8-70 71-159 (229)
99 COG3882 FkbH Predicted enzyme 96.4 0.018 3.8E-07 49.1 7.8 61 5-65 218-291 (574)
100 PRK10725 fructose-1-P/6-phosph 96.3 0.006 1.3E-07 44.5 3.9 28 8-38 4-31 (188)
101 PF12710 HAD: haloacid dehalog 96.2 0.007 1.5E-07 44.0 4.2 34 36-69 96-129 (192)
102 PRK13288 pyrophosphatase PpaX; 96.2 0.0059 1.3E-07 45.7 3.8 18 7-24 1-18 (214)
103 COG5083 SMP2 Uncharacterized p 96.1 0.0037 8E-08 52.6 2.5 70 7-85 373-453 (580)
104 PRK10748 flavin mononucleotide 96.1 0.0099 2.1E-07 45.6 4.7 17 8-24 9-25 (238)
105 PRK13223 phosphoglycolate phos 96.0 0.008 1.7E-07 47.2 3.8 21 4-24 8-28 (272)
106 PLN02770 haloacid dehalogenase 95.8 0.01 2.3E-07 45.8 3.7 17 8-24 21-37 (248)
107 TIGR02137 HSK-PSP phosphoserin 95.8 0.075 1.6E-06 40.1 8.2 32 37-69 76-107 (203)
108 PF09419 PGP_phosphatase: Mito 95.7 0.033 7.2E-07 41.2 5.8 61 4-68 36-107 (168)
109 TIGR01548 HAD-SF-IA-hyp1 haloa 95.7 0.0093 2E-07 44.1 2.7 14 11-24 2-15 (197)
110 TIGR02009 PGMB-YQAB-SF beta-ph 95.7 0.014 3.1E-07 42.2 3.6 16 9-24 1-16 (185)
111 COG4996 Predicted phosphatase 95.6 0.041 8.8E-07 39.5 5.4 66 10-75 1-88 (164)
112 TIGR02250 FCP1_euk FCP1-like p 95.4 0.13 2.8E-06 37.3 8.0 62 7-69 4-97 (156)
113 PRK10563 6-phosphogluconate ph 95.3 0.025 5.5E-07 42.4 4.0 17 8-24 3-19 (221)
114 PRK10826 2-deoxyglucose-6-phos 95.3 0.026 5.7E-07 42.4 4.1 34 44-77 107-141 (222)
115 TIGR03351 PhnX-like phosphonat 95.3 0.023 5E-07 42.5 3.7 34 44-77 102-138 (220)
116 PF03031 NIF: NLI interacting 95.2 0.0096 2.1E-07 42.6 1.5 54 10-67 1-73 (159)
117 TIGR02251 HIF-SF_euk Dullard-l 95.1 0.047 1E-06 39.7 4.8 59 9-68 1-80 (162)
118 PRK11590 hypothetical protein; 95.1 0.016 3.6E-07 43.6 2.4 36 42-77 109-144 (211)
119 KOG1050 Trehalose-6-phosphate 95.1 0.07 1.5E-06 47.8 6.6 104 3-121 497-605 (732)
120 PRK13222 phosphoglycolate phos 95.0 0.028 6.2E-07 41.9 3.6 33 44-76 108-141 (226)
121 TIGR02252 DREG-2 REG-2-like, H 95.0 0.02 4.3E-07 42.4 2.6 15 10-24 1-15 (203)
122 PF06437 ISN1: IMP-specific 5' 95.0 0.094 2E-06 43.5 6.7 101 8-113 146-272 (408)
123 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.0 0.017 3.7E-07 42.3 2.3 32 38-69 89-120 (201)
124 PRK13226 phosphoglycolate phos 94.9 0.028 6.1E-07 42.7 3.3 17 8-24 11-27 (229)
125 TIGR02254 YjjG/YfnB HAD superf 94.9 0.033 7.2E-07 41.4 3.6 16 9-24 1-16 (224)
126 PLN02779 haloacid dehalogenase 94.8 0.026 5.7E-07 44.7 3.1 19 6-24 37-55 (286)
127 TIGR00338 serB phosphoserine p 94.8 0.019 4.1E-07 43.0 2.0 32 38-69 94-125 (219)
128 PHA02597 30.2 hypothetical pro 94.7 0.016 3.5E-07 42.7 1.5 16 9-24 2-17 (197)
129 PRK13225 phosphoglycolate phos 94.7 0.027 5.8E-07 44.4 2.8 17 8-24 61-77 (273)
130 TIGR01454 AHBA_synth_RP 3-amin 94.5 0.029 6.3E-07 41.6 2.4 33 44-76 90-123 (205)
131 PLN03243 haloacid dehalogenase 94.3 0.028 6E-07 44.0 2.1 40 38-77 118-158 (260)
132 COG0637 Predicted phosphatase/ 94.3 0.059 1.3E-06 41.1 3.8 16 9-24 2-17 (221)
133 PRK09449 dUMP phosphatase; Pro 94.3 0.024 5.2E-07 42.5 1.6 38 39-77 105-143 (224)
134 TIGR01990 bPGM beta-phosphoglu 94.3 0.047 1E-06 39.5 3.1 14 11-24 1-14 (185)
135 COG0241 HisB Histidinol phosph 94.0 0.11 2.4E-06 38.9 4.6 66 9-78 5-95 (181)
136 PLN02940 riboflavin kinase 93.8 0.073 1.6E-06 44.0 3.7 16 9-24 11-26 (382)
137 TIGR01545 YfhB_g-proteo haloac 93.8 0.048 1E-06 41.3 2.4 35 42-76 108-142 (210)
138 TIGR02245 HAD_IIID1 HAD-superf 93.8 0.14 3E-06 38.8 4.8 57 8-68 20-83 (195)
139 TIGR01449 PGP_bact 2-phosphogl 93.7 0.051 1.1E-06 40.2 2.4 13 12-24 1-13 (213)
140 TIGR01993 Pyr-5-nucltdase pyri 93.7 0.045 9.7E-07 39.9 2.0 14 11-24 2-15 (184)
141 PRK06698 bifunctional 5'-methy 93.6 0.052 1.1E-06 45.7 2.5 17 8-24 240-256 (459)
142 TIGR01488 HAD-SF-IB Haloacid D 93.5 0.033 7.1E-07 40.0 1.0 32 38-69 82-113 (177)
143 TIGR01493 HAD-SF-IA-v2 Haloaci 93.2 0.082 1.8E-06 38.0 2.7 14 11-24 1-14 (175)
144 TIGR01548 HAD-SF-IA-hyp1 haloa 93.0 0.3 6.5E-06 36.0 5.5 41 36-76 113-154 (197)
145 TIGR01428 HAD_type_II 2-haloal 92.9 0.062 1.3E-06 39.5 1.8 37 40-76 103-140 (198)
146 PRK11133 serB phosphoserine ph 92.9 0.11 2.5E-06 42.0 3.4 26 43-68 195-220 (322)
147 TIGR01489 DKMTPPase-SF 2,3-dik 92.8 0.08 1.7E-06 38.2 2.2 36 41-76 84-120 (188)
148 COG1011 Predicted hydrolase (H 92.1 0.11 2.4E-06 38.7 2.2 18 7-24 2-19 (229)
149 PLN02770 haloacid dehalogenase 91.9 0.5 1.1E-05 36.3 5.7 43 36-78 115-158 (248)
150 COG4359 Uncharacterized conser 91.8 0.76 1.6E-05 34.8 6.3 46 41-86 85-132 (220)
151 TIGR02247 HAD-1A3-hyp Epoxide 91.6 0.11 2.4E-06 38.6 1.8 16 9-24 2-17 (211)
152 TIGR01449 PGP_bact 2-phosphogl 91.4 0.59 1.3E-05 34.4 5.5 40 38-77 94-134 (213)
153 TIGR01490 HAD-SF-IB-hyp1 HAD-s 91.3 0.11 2.3E-06 38.3 1.3 29 41-69 99-127 (202)
154 TIGR03351 PhnX-like phosphonat 90.9 0.63 1.4E-05 34.6 5.3 16 9-24 1-16 (220)
155 PRK13288 pyrophosphatase PpaX; 90.8 0.65 1.4E-05 34.5 5.3 40 37-76 90-130 (214)
156 TIGR01454 AHBA_synth_RP 3-amin 90.5 0.69 1.5E-05 34.1 5.2 13 12-24 1-13 (205)
157 PF13419 HAD_2: Haloacid dehal 90.5 0.54 1.2E-05 32.8 4.4 40 38-77 86-126 (176)
158 PLN02575 haloacid dehalogenase 90.4 0.16 3.4E-06 42.2 1.7 40 38-77 225-265 (381)
159 COG3700 AphA Acid phosphatase 90.2 0.43 9.3E-06 36.1 3.7 60 4-63 58-148 (237)
160 KOG1618 Predicted phosphatase 89.4 0.51 1.1E-05 38.6 3.8 44 9-52 35-78 (389)
161 PLN02919 haloacid dehalogenase 89.3 0.4 8.7E-06 44.7 3.6 18 7-24 73-90 (1057)
162 PF06941 NT5C: 5' nucleotidase 89.1 0.23 5E-06 36.7 1.6 15 9-23 1-16 (191)
163 TIGR01509 HAD-SF-IA-v3 haloaci 88.8 0.18 4E-06 36.1 0.9 39 38-77 94-133 (183)
164 PF13419 HAD_2: Haloacid dehal 88.5 0.19 4E-06 35.2 0.7 13 12-24 1-13 (176)
165 PLN03243 haloacid dehalogenase 88.4 1.3 2.9E-05 34.6 5.5 19 6-24 21-39 (260)
166 TIGR03333 salvage_mtnX 2-hydro 88.2 0.24 5.1E-06 37.2 1.1 30 38-67 79-108 (214)
167 PRK10826 2-deoxyglucose-6-phos 88.1 1.5 3.4E-05 32.7 5.6 19 6-24 4-22 (222)
168 PF00702 Hydrolase: haloacid d 88.0 0.28 6.2E-06 35.8 1.5 31 38-68 136-166 (215)
169 PRK09456 ?-D-glucose-1-phospha 87.7 0.36 7.8E-06 35.7 1.9 15 10-24 1-15 (199)
170 COG2503 Predicted secreted aci 87.7 1.1 2.3E-05 35.4 4.4 60 7-69 77-166 (274)
171 TIGR01511 ATPase-IB1_Cu copper 87.5 0.83 1.8E-05 39.6 4.2 60 9-68 385-444 (562)
172 PF03332 PMM: Eukaryotic phosp 87.5 0.45 9.8E-06 36.7 2.3 56 44-99 10-66 (220)
173 TIGR01525 ATPase-IB_hvy heavy 87.5 0.64 1.4E-05 40.1 3.5 61 9-69 364-425 (556)
174 TIGR01106 ATPase-IIC_X-K sodiu 87.4 1.1 2.3E-05 41.6 5.1 32 38-69 577-608 (997)
175 TIGR02009 PGMB-YQAB-SF beta-ph 87.1 1.3 2.9E-05 31.7 4.6 37 39-77 98-135 (185)
176 PRK13222 phosphoglycolate phos 86.9 2.4 5.2E-05 31.4 6.0 17 7-23 4-20 (226)
177 TIGR01428 HAD_type_II 2-haloal 86.8 1.9 4.2E-05 31.5 5.3 15 10-24 2-16 (198)
178 PLN02575 haloacid dehalogenase 85.9 1.8 3.9E-05 36.0 5.2 18 7-24 129-146 (381)
179 PRK11590 hypothetical protein; 85.3 3 6.4E-05 31.2 5.8 18 7-24 4-21 (211)
180 PF06888 Put_Phosphatase: Puta 84.9 0.64 1.4E-05 36.1 2.0 27 43-69 87-113 (234)
181 PRK13223 phosphoglycolate phos 84.8 2.7 5.8E-05 32.9 5.5 41 38-78 110-151 (272)
182 TIGR01544 HAD-SF-IE haloacid d 84.4 2.9 6.3E-05 33.3 5.5 39 37-75 129-167 (277)
183 PLN02177 glycerol-3-phosphate 84.1 0.77 1.7E-05 39.5 2.3 30 43-76 121-151 (497)
184 TIGR01509 HAD-SF-IA-v3 haloaci 83.9 3.3 7.1E-05 29.4 5.3 12 12-23 2-13 (183)
185 TIGR01491 HAD-SF-IB-PSPlk HAD- 83.9 2.5 5.4E-05 30.6 4.8 17 8-24 3-19 (201)
186 PF00702 Hydrolase: haloacid d 83.7 1.9 4.2E-05 31.4 4.1 14 10-23 2-15 (215)
187 PRK13225 phosphoglycolate phos 83.2 3.4 7.3E-05 32.5 5.5 39 38-76 151-190 (273)
188 TIGR01489 DKMTPPase-SF 2,3-dik 82.7 3.2 6.9E-05 29.7 4.9 15 10-24 2-16 (188)
189 PRK13226 phosphoglycolate phos 82.7 4.2 9E-05 30.7 5.7 40 38-77 104-144 (229)
190 TIGR01488 HAD-SF-IB Haloacid D 82.2 3.5 7.5E-05 29.3 4.9 14 11-24 1-14 (177)
191 TIGR02244 HAD-IG-Ncltidse HAD 81.1 4.7 0.0001 33.1 5.7 47 33-79 188-243 (343)
192 PRK06698 bifunctional 5'-methy 80.7 4.1 9E-05 34.3 5.5 40 38-77 339-379 (459)
193 PF04312 DUF460: Protein of un 80.5 1.8 3.9E-05 31.0 2.7 58 6-66 40-99 (138)
194 COG0637 Predicted phosphatase/ 80.0 2.8 6E-05 31.8 3.8 39 38-76 95-134 (221)
195 KOG3040 Predicted sugar phosph 79.3 5.4 0.00012 31.0 5.1 58 7-68 5-65 (262)
196 TIGR01512 ATPase-IB2_Cd heavy 79.0 3 6.5E-05 35.9 4.2 60 10-69 343-403 (536)
197 TIGR01545 YfhB_g-proteo haloac 78.8 6.7 0.00015 29.5 5.6 17 8-24 4-20 (210)
198 COG4087 Soluble P-type ATPase 78.6 2.1 4.6E-05 30.7 2.6 54 11-69 16-69 (152)
199 KOG2134 Polynucleotide kinase 78.4 1.7 3.7E-05 36.3 2.4 40 9-52 75-127 (422)
200 TIGR02254 YjjG/YfnB HAD superf 78.2 6.1 0.00013 29.1 5.2 39 38-77 106-145 (224)
201 TIGR01490 HAD-SF-IB-hyp1 HAD-s 77.9 6.2 0.00013 28.8 5.1 14 11-24 1-14 (202)
202 TIGR00338 serB phosphoserine p 77.6 5.8 0.00013 29.3 4.9 17 8-24 13-29 (219)
203 KOG1605 TFIIF-interacting CTD 77.4 1.9 4.1E-05 34.1 2.2 21 4-24 84-104 (262)
204 PTZ00056 glutathione peroxidas 77.0 25 0.00055 26.2 8.3 43 29-71 56-106 (199)
205 PLN02499 glycerol-3-phosphate 76.6 2 4.3E-05 37.0 2.3 37 41-84 105-142 (498)
206 KOG3120 Predicted haloacid deh 76.2 2.3 5E-05 33.2 2.4 20 5-24 9-28 (256)
207 PRK10725 fructose-1-P/6-phosph 75.7 6.2 0.00013 28.3 4.6 33 45-77 102-135 (188)
208 PLN02940 riboflavin kinase 75.7 5.5 0.00012 32.9 4.7 42 37-78 101-144 (382)
209 TIGR01497 kdpB K+-transporting 74.9 3 6.5E-05 37.3 3.1 56 10-69 427-486 (675)
210 PF11019 DUF2608: Protein of u 74.5 11 0.00025 29.3 6.0 31 39-69 91-124 (252)
211 PRK09449 dUMP phosphatase; Pro 73.9 8.7 0.00019 28.5 5.1 16 8-23 2-17 (224)
212 TIGR03333 salvage_mtnX 2-hydro 72.1 13 0.00028 27.7 5.6 14 11-24 1-14 (214)
213 PRK11033 zntA zinc/cadmium/mer 71.9 5.5 0.00012 35.9 4.0 57 9-69 548-608 (741)
214 COG5663 Uncharacterized conser 71.6 2.9 6.3E-05 31.2 1.9 14 11-24 8-21 (194)
215 PRK11440 putative hydrolase; P 71.5 15 0.00032 26.9 5.7 52 1-52 1-55 (188)
216 KOG4549 Magnesium-dependent ph 71.4 5.2 0.00011 28.5 3.0 60 9-68 18-84 (144)
217 TIGR02252 DREG-2 REG-2-like, H 69.3 13 0.00028 27.1 5.0 40 37-77 113-153 (203)
218 TIGR01990 bPGM beta-phosphoglu 68.8 13 0.00027 26.5 4.8 37 38-76 96-133 (185)
219 TIGR01657 P-ATPase-V P-type AT 67.6 10 0.00022 35.5 5.0 32 39-70 666-697 (1054)
220 TIGR01116 ATPase-IIA1_Ca sarco 65.9 14 0.00031 34.0 5.5 33 38-70 546-578 (917)
221 TIGR01647 ATPase-IIIA_H plasma 65.9 13 0.00027 33.6 5.1 32 39-70 452-483 (755)
222 PF00578 AhpC-TSA: AhpC/TSA fa 64.9 21 0.00046 23.5 5.1 47 29-77 43-89 (124)
223 KOG2882 p-Nitrophenyl phosphat 64.1 17 0.00037 29.4 5.0 56 10-69 23-81 (306)
224 KOG2098 Predicted N6-adenine R 64.1 4.6 9.9E-05 34.5 1.8 33 40-72 422-454 (591)
225 KOG1615 Phosphoserine phosphat 64.0 6 0.00013 30.3 2.3 29 42-70 101-129 (227)
226 PLN02919 haloacid dehalogenase 63.5 19 0.00041 33.9 5.8 40 38-77 170-211 (1057)
227 PRK10671 copA copper exporting 61.8 14 0.0003 33.7 4.6 57 9-69 630-690 (834)
228 PLN02811 hydrolase 61.8 16 0.00034 27.3 4.3 42 37-78 86-129 (220)
229 KOG3109 Haloacid dehalogenase- 60.9 11 0.00023 29.4 3.2 18 7-24 13-30 (244)
230 TIGR01524 ATPase-IIIB_Mg magne 60.8 24 0.00052 32.4 5.9 32 38-69 524-555 (867)
231 TIGR01522 ATPase-IIA2_Ca golgi 59.9 7.8 0.00017 35.6 2.7 32 38-69 537-568 (884)
232 PRK01122 potassium-transportin 59.3 7.7 0.00017 34.7 2.5 56 10-69 426-485 (679)
233 TIGR01523 ATPase-IID_K-Na pota 58.9 19 0.00042 33.8 5.1 33 38-70 655-687 (1053)
234 TIGR03614 RutB pyrimidine util 58.7 33 0.00072 26.0 5.6 48 4-51 11-68 (226)
235 TIGR01517 ATPase-IIB_Ca plasma 57.3 24 0.00051 32.7 5.3 32 39-70 589-620 (941)
236 KOG3085 Predicted hydrolase (H 57.2 15 0.00033 28.6 3.5 18 7-24 5-22 (237)
237 COG1335 PncA Amidases related 55.8 40 0.00087 24.7 5.6 52 5-56 2-60 (205)
238 PRK14010 potassium-transportin 55.7 26 0.00056 31.5 5.1 31 39-69 451-481 (673)
239 TIGR02247 HAD-1A3-hyp Epoxide 55.5 19 0.00041 26.4 3.8 40 37-76 102-144 (211)
240 smart00463 SMR Small MutS-rela 55.0 27 0.00058 21.8 3.9 32 28-59 12-45 (80)
241 PRK10517 magnesium-transportin 53.0 21 0.00046 33.0 4.3 32 38-69 559-590 (902)
242 TIGR00090 iojap_ybeB iojap-lik 52.8 13 0.00029 24.7 2.3 18 47-64 31-48 (99)
243 PRK04128 1-(5-phosphoribosyl)- 52.8 57 0.0012 25.0 6.1 49 9-64 44-93 (228)
244 COG0799 Uncharacterized homolo 49.9 48 0.001 23.0 4.7 19 47-65 36-54 (115)
245 PF04007 DUF354: Protein of un 49.2 46 0.00099 27.2 5.3 51 29-82 11-61 (335)
246 KOG2914 Predicted haloacid-hal 49.2 28 0.0006 26.8 3.8 17 8-24 9-25 (222)
247 COG2217 ZntA Cation transport 48.9 17 0.00037 32.8 3.0 55 11-69 519-577 (713)
248 cd03012 TlpA_like_DipZ_like Tl 48.7 80 0.0017 21.1 6.5 43 29-71 40-88 (126)
249 KOG1615 Phosphoserine phosphat 47.8 84 0.0018 24.2 6.1 17 8-24 15-31 (227)
250 cd03017 PRX_BCP Peroxiredoxin 47.8 83 0.0018 21.1 6.5 43 29-71 41-83 (140)
251 COG0420 SbcD DNA repair exonuc 47.5 37 0.0008 27.8 4.6 42 18-59 48-89 (390)
252 PRK11538 ribosome-associated p 47.2 18 0.00039 24.5 2.3 16 47-62 36-51 (105)
253 PRK11133 serB phosphoserine ph 47.0 42 0.00092 27.1 4.8 18 7-24 108-125 (322)
254 PF12611 DUF3766: Protein of u 46.9 10 0.00022 19.0 0.7 12 10-21 13-24 (24)
255 PF05872 DUF853: Bacterial pro 46.7 47 0.001 28.7 5.1 55 8-64 254-309 (502)
256 TIGR02244 HAD-IG-Ncltidse HAD 46.5 22 0.00048 29.2 3.1 21 4-24 7-27 (343)
257 cd02970 PRX_like2 Peroxiredoxi 46.0 73 0.0016 21.5 5.3 53 29-83 41-93 (149)
258 cd00431 cysteine_hydrolases Cy 45.9 75 0.0016 22.1 5.5 42 11-52 2-47 (161)
259 cd03018 PRX_AhpE_like Peroxire 44.5 99 0.0021 21.0 6.4 43 29-71 46-88 (149)
260 PRK15122 magnesium-transportin 44.2 47 0.001 30.8 5.1 32 38-69 559-590 (903)
261 PRK09456 ?-D-glucose-1-phospha 43.7 57 0.0012 23.8 4.7 28 36-63 91-118 (199)
262 PRK00358 pyrH uridylate kinase 43.0 69 0.0015 24.2 5.2 43 11-53 2-47 (231)
263 PLN02779 haloacid dehalogenase 42.9 51 0.0011 25.9 4.6 31 36-66 151-181 (286)
264 cd07388 MPP_Tt1561 Thermus the 42.8 1.1E+02 0.0023 23.5 6.2 22 43-64 60-81 (224)
265 cd07043 STAS_anti-anti-sigma_f 42.8 82 0.0018 19.6 6.2 55 9-69 38-92 (99)
266 TIGR01993 Pyr-5-nucltdase pyri 42.2 69 0.0015 22.8 4.9 32 46-77 98-130 (184)
267 COG0528 PyrH Uridylate kinase 42.2 93 0.002 24.4 5.7 48 7-54 3-53 (238)
268 TIGR00236 wecB UDP-N-acetylglu 41.7 1E+02 0.0022 24.5 6.2 41 34-75 16-58 (365)
269 PF01740 STAS: STAS domain; I 41.5 58 0.0013 21.4 4.1 55 8-68 47-101 (117)
270 PRK13798 putative OHCU decarbo 41.4 87 0.0019 22.9 5.3 22 43-64 111-133 (166)
271 COG0263 ProB Glutamate 5-kinas 41.2 95 0.0021 25.9 5.9 58 6-64 163-249 (369)
272 PRK14557 pyrH uridylate kinase 41.0 39 0.00084 26.3 3.6 76 6-84 153-245 (247)
273 cd04241 AAK_FomA-like AAK_FomA 41.0 53 0.0011 25.1 4.3 15 8-22 163-177 (252)
274 PF06189 5-nucleotidase: 5'-nu 40.8 72 0.0016 25.4 5.0 26 44-69 185-213 (264)
275 PRK11609 nicotinamidase/pyrazi 40.5 1.1E+02 0.0025 22.6 6.0 46 7-52 1-50 (212)
276 TIGR03164 UHCUDC OHCU decarbox 40.1 95 0.0021 22.5 5.3 22 43-64 106-128 (157)
277 PF05988 DUF899: Bacterial pro 39.6 1.2E+02 0.0025 23.4 5.8 50 30-81 91-140 (211)
278 COG0474 MgtA Cation transport 39.2 48 0.001 30.8 4.3 31 40-70 558-588 (917)
279 COG2247 LytB Putative cell wal 38.9 40 0.00086 27.7 3.4 35 44-82 131-166 (337)
280 PRK13587 1-(5-phosphoribosyl)- 38.5 1.2E+02 0.0025 23.3 5.8 60 9-84 163-226 (234)
281 PRK14556 pyrH uridylate kinase 38.4 42 0.0009 26.4 3.4 59 6-64 164-238 (249)
282 PF02410 Oligomerisation: Olig 37.6 33 0.00072 22.7 2.4 17 46-62 30-46 (100)
283 PRK12353 putative amino acid k 37.5 62 0.0013 26.1 4.3 47 10-56 3-53 (314)
284 TIGR03180 UraD_2 OHCU decarbox 37.4 1.1E+02 0.0024 22.1 5.3 22 43-64 106-128 (158)
285 PLN02588 glycerol-3-phosphate 37.3 21 0.00046 31.0 1.7 33 47-84 147-179 (525)
286 TIGR02886 spore_II_AA anti-sig 36.0 1.2E+02 0.0026 19.5 6.7 56 8-69 38-93 (106)
287 KOG2914 Predicted haloacid-hal 35.6 45 0.00096 25.7 3.1 50 36-85 99-150 (222)
288 COG0120 RpiA Ribose 5-phosphat 35.5 56 0.0012 25.4 3.6 34 73-117 167-200 (227)
289 PF10087 DUF2325: Uncharacteri 35.4 79 0.0017 20.5 3.9 24 42-65 72-95 (97)
290 cd07041 STAS_RsbR_RsbS_like Su 35.1 1.3E+02 0.0027 19.5 7.3 56 8-69 40-95 (109)
291 PRK05429 gamma-glutamyl kinase 34.9 1E+02 0.0022 25.4 5.3 46 8-53 7-54 (372)
292 COG2433 Uncharacterized conser 34.7 51 0.0011 29.4 3.5 57 7-66 253-311 (652)
293 cd02971 PRX_family Peroxiredox 34.6 1.4E+02 0.003 19.9 6.4 38 29-66 40-77 (140)
294 PF05063 MT-A70: MT-A70 ; Int 34.5 65 0.0014 23.4 3.7 32 38-69 38-71 (176)
295 PRK06437 hypothetical protein; 34.4 63 0.0014 19.8 3.1 27 57-83 21-47 (67)
296 PF02557 VanY: D-alanyl-D-alan 34.2 51 0.0011 22.7 3.0 36 28-63 6-42 (132)
297 PRK12314 gamma-glutamyl kinase 34.0 1E+02 0.0022 24.1 4.9 45 9-53 9-56 (266)
298 PF12048 DUF3530: Protein of u 33.9 1.6E+02 0.0035 23.6 6.2 47 30-76 176-224 (310)
299 cd04239 AAK_UMPK-like AAK_UMPK 33.9 2.1E+02 0.0045 21.6 7.2 57 8-64 148-220 (229)
300 cd04242 AAK_G5K_ProB AAK_G5K_P 33.4 1.2E+02 0.0026 23.3 5.3 16 8-23 158-173 (251)
301 KOG0203 Na+/K+ ATPase, alpha s 32.9 99 0.0022 28.9 5.1 28 40-67 601-628 (1019)
302 PRK13111 trpA tryptophan synth 32.7 98 0.0021 24.3 4.6 59 15-80 117-177 (258)
303 COG4850 Uncharacterized conser 32.6 1E+02 0.0022 25.6 4.8 51 10-60 162-228 (373)
304 PRK08053 sulfur carrier protei 32.6 67 0.0015 19.4 3.0 36 45-83 7-42 (66)
305 KOG2469 IMP-GMP specific 5'-nu 32.0 31 0.00066 29.2 1.8 23 4-26 22-44 (424)
306 cd07042 STAS_SulP_like_sulfate 31.8 1.3E+02 0.0029 18.8 6.2 52 10-68 42-94 (107)
307 PF04536 TPM: TLP18.3, Psb32 a 31.8 1.5E+02 0.0032 19.4 5.5 53 29-84 5-64 (119)
308 TIGR01494 ATPase_P-type ATPase 30.5 1.1E+02 0.0023 26.0 4.8 28 41-68 359-386 (499)
309 KOG3212 Uncharacterized conser 30.5 49 0.0011 25.1 2.5 34 29-62 69-115 (208)
310 PTZ00079 NADP-specific glutama 30.2 65 0.0014 27.6 3.4 23 9-31 261-284 (454)
311 COG1603 RPP1 RNase P/RNase MRP 30.1 1.2E+02 0.0026 23.6 4.6 24 30-53 147-170 (229)
312 PRK00748 1-(5-phosphoribosyl)- 29.8 2E+02 0.0044 21.4 5.9 15 9-23 45-59 (233)
313 TIGR01691 enolase-ppase 2,3-di 29.6 1.1E+02 0.0024 23.2 4.4 28 39-66 105-132 (220)
314 COG1576 Uncharacterized conser 29.5 1.5E+02 0.0032 21.7 4.7 49 9-65 68-116 (155)
315 PRK13717 conjugal transfer pro 29.1 29 0.00063 24.5 1.0 18 6-23 42-59 (128)
316 PF10686 DUF2493: Protein of u 28.9 1E+02 0.0022 19.2 3.4 22 44-65 2-23 (71)
317 PF06833 MdcE: Malonate decarb 28.8 2.8E+02 0.0062 21.6 7.3 107 7-123 64-174 (234)
318 TIGR02075 pyrH_bact uridylate 28.7 1.6E+02 0.0035 22.3 5.2 46 10-55 2-50 (233)
319 KOG0202 Ca2+ transporting ATPa 28.7 2.3E+02 0.005 26.6 6.7 54 9-69 571-624 (972)
320 TIGR00734 hisAF_rel hisA/hisF 28.7 2.6E+02 0.0056 21.2 6.7 45 10-64 156-204 (221)
321 COG4725 IME4 Transcriptional a 28.7 81 0.0018 23.5 3.3 47 38-84 49-100 (198)
322 PRK09437 bcp thioredoxin-depen 28.6 2E+02 0.0043 19.8 7.1 42 30-71 49-90 (154)
323 KOG2695 WD40 repeat protein [G 28.3 28 0.00061 29.0 0.9 20 4-23 307-328 (425)
324 PF00696 AA_kinase: Amino acid 28.2 54 0.0012 24.5 2.5 55 11-69 2-56 (242)
325 PRK09411 carbamate kinase; Rev 28.1 88 0.0019 25.3 3.7 17 8-24 216-232 (297)
326 cd06844 STAS Sulphate Transpor 28.0 1.7E+02 0.0036 18.7 6.6 56 8-69 38-93 (100)
327 COG1121 ZnuC ABC-type Mn/Zn tr 27.9 2.6E+02 0.0057 22.0 6.3 50 28-86 172-221 (254)
328 cd05008 SIS_GlmS_GlmD_1 SIS (S 27.5 95 0.0021 20.6 3.4 25 39-63 67-91 (126)
329 cd00565 ThiS ThiaminS ubiquiti 27.2 91 0.002 18.6 2.9 36 45-83 6-41 (65)
330 PRK00103 rRNA large subunit me 27.2 1.8E+02 0.0039 21.0 5.0 47 10-64 69-116 (157)
331 cd01012 YcaC_related YcaC rela 26.6 88 0.0019 22.0 3.2 42 11-52 2-43 (157)
332 cd04254 AAK_UMPK-PyrH-Ec UMP k 26.4 1.7E+02 0.0036 22.2 4.9 43 10-52 1-46 (231)
333 PRK09982 universal stress prot 26.4 2.1E+02 0.0047 19.4 6.3 33 44-79 80-112 (142)
334 PRK03892 ribonuclease P protei 26.2 1.9E+02 0.004 22.4 5.0 10 43-52 128-137 (216)
335 TIGR00246 tRNA_RlmH_YbeA rRNA 26.1 1.6E+02 0.0034 21.3 4.5 48 9-64 66-113 (153)
336 PF13911 AhpC-TSA_2: AhpC/TSA 26.0 1E+02 0.0023 20.3 3.3 42 41-84 9-50 (115)
337 PRK11914 diacylglycerol kinase 25.9 2.4E+02 0.0052 22.1 5.9 40 40-79 34-73 (306)
338 TIGR03765 ICE_PFL_4695 integra 25.9 82 0.0018 21.5 2.7 34 30-63 39-72 (105)
339 PRK14558 pyrH uridylate kinase 25.9 1.3E+02 0.0029 22.7 4.3 41 12-52 3-46 (231)
340 PF01380 SIS: SIS domain SIS d 25.8 1.1E+02 0.0024 20.1 3.5 23 41-63 76-98 (131)
341 PRK00724 formate dehydrogenase 25.7 1.2E+02 0.0025 23.9 4.0 98 11-135 162-262 (263)
342 PRK00942 acetylglutamate kinas 25.6 1.1E+02 0.0023 24.0 3.8 56 9-69 23-78 (283)
343 COG0373 HemA Glutamyl-tRNA red 25.6 1.5E+02 0.0034 25.0 4.9 43 41-83 197-251 (414)
344 COG3384 Aromatic ring-opening 25.5 2.6E+02 0.0056 22.3 5.8 52 7-65 131-182 (268)
345 cd05013 SIS_RpiR RpiR-like pro 25.4 1.1E+02 0.0023 20.2 3.4 19 42-60 84-102 (139)
346 PRK08364 sulfur carrier protei 25.1 1.1E+02 0.0025 18.6 3.2 27 58-84 25-51 (70)
347 TIGR00021 rpiA ribose 5-phosph 25.0 2.3E+02 0.0051 21.6 5.4 34 73-117 162-196 (218)
348 TIGR00129 fdhD_narQ formate de 24.8 2.5E+02 0.0054 21.7 5.6 66 46-138 171-236 (237)
349 PF09664 DUF2399: Protein of u 24.7 1.7E+02 0.0037 21.0 4.4 47 33-88 29-75 (152)
350 KOG0207 Cation transport ATPas 24.7 89 0.0019 29.2 3.5 57 8-68 702-762 (951)
351 TIGR02826 RNR_activ_nrdG3 anae 24.6 1.8E+02 0.0039 20.7 4.5 25 34-58 77-101 (147)
352 PF13707 RloB: RloB-like prote 24.6 1.8E+02 0.0039 20.8 4.6 49 7-65 60-108 (183)
353 PF00128 Alpha-amylase: Alpha 24.5 80 0.0017 23.9 2.9 36 30-65 50-90 (316)
354 PRK05990 precorrin-2 C(20)-met 24.5 3.1E+02 0.0067 20.9 6.1 37 42-79 172-208 (241)
355 PRK04946 hypothetical protein; 24.5 2E+02 0.0043 21.5 4.8 39 28-66 106-145 (181)
356 PRK11614 livF leucine/isoleuci 24.5 3E+02 0.0065 20.5 6.6 50 28-85 170-219 (237)
357 cd04056 Peptidases_S53 Peptida 24.2 1.2E+02 0.0025 24.8 3.9 30 30-59 138-167 (361)
358 COG1213 Predicted sugar nucleo 24.2 1.5E+02 0.0032 23.3 4.2 73 41-113 41-120 (239)
359 PRK05863 sulfur carrier protei 23.7 1E+02 0.0023 18.5 2.7 36 45-83 7-42 (65)
360 cd07494 Peptidases_S8_10 Pepti 23.5 1.1E+02 0.0024 24.2 3.6 26 31-56 131-156 (298)
361 cd01013 isochorismatase Isocho 23.5 1.8E+02 0.0038 21.6 4.5 46 6-51 27-76 (203)
362 COG1674 FtsK DNA segregation A 23.5 1E+02 0.0023 28.4 3.8 58 9-69 638-697 (858)
363 PRK07696 sulfur carrier protei 23.2 1.4E+02 0.003 18.2 3.2 26 58-83 18-43 (67)
364 PLN02621 nicotinamidase 22.9 2E+02 0.0043 21.1 4.6 46 5-53 17-62 (197)
365 COG2104 ThiS Sulfur transfer p 22.9 1.2E+02 0.0026 18.8 2.9 36 45-83 9-44 (68)
366 cd02115 AAK Amino Acid Kinases 22.8 1.4E+02 0.0031 22.3 4.0 34 16-53 4-37 (248)
367 PF10035 DUF2179: Uncharacteri 22.7 1.2E+02 0.0026 17.4 2.8 30 44-76 17-46 (55)
368 cd07018 S49_SppA_67K_type Sign 22.7 1.9E+02 0.0041 21.8 4.5 45 12-56 1-57 (222)
369 COG1526 FdhD Uncharacterized p 22.6 3E+02 0.0065 21.9 5.7 101 10-137 161-264 (266)
370 TIGR00619 sbcd exonuclease Sbc 22.6 2.2E+02 0.0047 21.9 5.0 40 18-57 47-87 (253)
371 COG4519 Uncharacterized protei 22.6 75 0.0016 20.8 1.9 29 99-127 31-59 (95)
372 COG0149 TpiA Triosephosphate i 22.5 1.1E+02 0.0024 24.1 3.3 42 15-56 88-132 (251)
373 TIGR01652 ATPase-Plipid phosph 22.5 1.7E+02 0.0036 27.6 5.0 32 39-70 641-672 (1057)
374 PLN02512 acetylglutamate kinas 22.5 3.7E+02 0.0081 21.4 6.4 56 9-69 47-102 (309)
375 smart00266 CAD Domains present 22.5 1E+02 0.0022 19.7 2.5 16 9-24 38-53 (74)
376 PRK13402 gamma-glutamyl kinase 22.4 2.7E+02 0.0058 23.1 5.7 45 9-53 5-51 (368)
377 cd04256 AAK_P5CS_ProBA AAK_P5C 22.3 2.7E+02 0.0058 22.0 5.5 55 9-63 8-65 (284)
378 cd01014 nicotinamidase_related 22.3 2.3E+02 0.0051 19.7 4.8 42 11-52 2-46 (155)
379 PRK00912 ribonuclease P protei 22.3 2.8E+02 0.006 21.0 5.4 38 41-82 127-178 (237)
380 cd05710 SIS_1 A subgroup of th 22.0 1.3E+02 0.0027 20.2 3.2 25 39-63 68-92 (120)
381 COG1512 Beta-propeller domains 21.9 1.5E+02 0.0033 23.6 3.9 52 11-68 34-92 (271)
382 PF10307 DUF2410: Hypothetical 21.7 2.2E+02 0.0047 21.6 4.6 38 41-80 67-108 (197)
383 cd04240 AAK_UC AAK_UC: Unchara 21.6 1.9E+02 0.004 21.6 4.3 57 8-64 130-194 (203)
384 PRK12352 putative carbamate ki 21.5 1.7E+02 0.0037 23.7 4.3 17 7-23 229-245 (316)
385 PLN03211 ABC transporter G-25; 21.4 2.4E+02 0.0051 25.2 5.5 51 28-85 239-289 (659)
386 KOG0204 Calcium transporting A 21.2 1.9E+02 0.0042 27.2 4.8 45 39-83 657-702 (1034)
387 PF10262 Rdx: Rdx family; Int 20.9 2.1E+02 0.0045 17.7 3.8 10 46-55 3-12 (76)
388 COG4502 5'(3')-deoxyribonucleo 20.8 25 0.00055 25.7 -0.6 16 7-22 1-16 (180)
389 PLN02591 tryptophan synthase 20.8 2.1E+02 0.0046 22.3 4.6 63 14-83 105-169 (250)
390 PF00875 DNA_photolyase: DNA p 20.8 1.5E+02 0.0032 20.9 3.5 28 40-67 61-88 (165)
391 TIGR03127 RuMP_HxlB 6-phospho 20.8 1.3E+02 0.0029 21.5 3.2 25 39-63 93-117 (179)
392 cd01615 CIDE_N CIDE_N domain, 20.5 1.3E+02 0.0028 19.4 2.7 16 8-23 39-54 (78)
393 cd05017 SIS_PGI_PMI_1 The memb 20.3 2.7E+02 0.0059 18.4 4.8 27 39-67 64-90 (119)
394 TIGR01683 thiS thiamine biosyn 20.3 1.5E+02 0.0032 17.6 2.9 35 45-82 5-39 (64)
395 smart00642 Aamy Alpha-amylase 20.2 99 0.0021 22.4 2.4 21 30-50 68-88 (166)
396 cd04250 AAK_NAGK-C AAK_NAGK-C: 20.2 3.7E+02 0.008 20.9 5.9 56 9-69 14-69 (279)
397 cd07482 Peptidases_S8_Lantibio 20.1 1.5E+02 0.0032 22.8 3.5 29 31-59 131-159 (294)
398 cd01398 RPI_A RPI_A: Ribose 5- 20.0 1.6E+02 0.0036 22.2 3.7 34 73-117 163-196 (213)
No 1
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=99.94 E-value=2.9e-26 Score=178.02 Aligned_cols=125 Identities=34% Similarity=0.482 Sum_probs=105.6
Q ss_pred CceEEEEeCCCCCC-CCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 8 ARLMIVSDLDLTMV-DHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 8 ~~~li~~DlDGTLl-~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
+++||+|||||||+ .+ ...+.+|.++|+...+.++.|+++|||++.++++++++.+++.||++||+||++||++.
T Consensus 1 ~~~ll~sDlD~Tl~~~~----~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~~~ 76 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGD----DEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYYGE 76 (247)
T ss_dssp -SEEEEEETBTTTBHCH----HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEESS
T ss_pred CCEEEEEECCCCCcCCC----HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEcC
Confidence 47899999999999 33 46788898887645679999999999999999999999999899999999999999977
Q ss_pred CccccccHHHHhccCCChHHHHHHHhcCCCCcccccCCCccee--eeeeccc
Q 040434 87 SMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWM--VLMEQEV 136 (141)
Q Consensus 87 ~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~--~~~~~~~ 136 (141)
...++..|..++...|..+.++++++.++++..|++..|++|| ||++.+.
T Consensus 77 ~~~~d~~w~~~i~~~w~~~~v~~~l~~~~~l~~q~~~~q~~~k~sy~~~~~~ 128 (247)
T PF05116_consen 77 NWQPDEEWQAHIDERWDRERVEEILAELPGLRPQPESEQRPFKISYYVDPDD 128 (247)
T ss_dssp TTEE-HHHHHHHHTT--HHHHHHHHHCHCCEEEGGCCCGCCTCECEEEETTS
T ss_pred CCcChHHHHHHHHhcCChHHHHHHHHHhhCcccCCccccCCeeEEEEEeccc
Confidence 8889999999999999999999999999999999999999886 7777653
No 2
>PLN02382 probable sucrose-phosphatase
Probab=99.92 E-value=7e-24 Score=175.36 Aligned_cols=129 Identities=78% Similarity=1.154 Sum_probs=114.3
Q ss_pred CCCCCCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCe
Q 040434 1 MDRLDGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGT 80 (141)
Q Consensus 1 ~~~~~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa 80 (141)
|+|++++++.||++||||||++++........++..+|+++.++|+.|++||||++.++.++.+.+++..|+++||+||+
T Consensus 1 ~~~~~~~~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt 80 (413)
T PLN02382 1 MDRLSGSPRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGT 80 (413)
T ss_pred CCcccCCCCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 89999999999999999999987421124556777777777889999999999999999999999998899999999999
Q ss_pred EEEECCCccccccHHHHhccCCChHHHHHHHhcCCCCcccccCCCccee
Q 040434 81 EIVYGESMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWM 129 (141)
Q Consensus 81 ~I~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~ 129 (141)
+|++++...++..|...+...|....+.+.+..++.+.+|+...+.++|
T Consensus 81 ~I~~~~~~~~d~~w~~~l~~~w~~~~v~~~~~~~~~l~~q~~~~~~~~K 129 (413)
T PLN02382 81 EIAYGESMVPDHGWVEYLNKKWDREIVVEETSKFPELKLQPETEQRPHK 129 (413)
T ss_pred EEEeCCCCccChhHHHHHhccCChhhHHHHHhcCCCcccCCcccCCCeE
Confidence 9999888888999999999999988888888999888889888888888
No 3
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.89 E-value=2.8e-22 Score=154.98 Aligned_cols=124 Identities=56% Similarity=0.843 Sum_probs=103.7
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCc
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESM 88 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~ 88 (141)
+.+|+|||||||++++..+....+++.++++++.++|+.||+||||++.+++++.+++++..|+++|++||+.|+.++..
T Consensus 1 ~~li~tDlDGTLl~~~~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~~~ 80 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGDNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGGAE 80 (249)
T ss_pred CeEEEEcCCCcCcCCCCCChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCCCC
Confidence 36899999999998543224566788888888889999999999999999999999988888999999999999987666
Q ss_pred cccccHHHHhccCCChHHHHHHHhcCCCCcccccCCCcceeeee
Q 040434 89 VHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWMVLM 132 (141)
Q Consensus 89 ~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~~~~ 132 (141)
.++..|...+...|..+.+.++...++.+..++...+..+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~ 124 (249)
T TIGR01485 81 VPDQHWAEYLSEKWQRDIVVAITDKFEELKPQPDLEQRPHKVSF 124 (249)
T ss_pred cCCHHHHHHHhcccCHHHHHHHHhcCcccccCCccccCCeeEEE
Confidence 77899999999999888788888888888777766666676433
No 4
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.83 E-value=1.3e-19 Score=138.80 Aligned_cols=114 Identities=32% Similarity=0.448 Sum_probs=91.1
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCccc
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESMVH 90 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~~~ 90 (141)
+|++||||||++++ ..+..+..+++ ++++|+.|++||||++.+++++++.+++..|+++||+||++|+......+
T Consensus 1 li~~DlDgTLl~~~----~~~~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~~~~~~~~ 75 (236)
T TIGR02471 1 LIITDLDNTLLGDD----EGLASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIYYGPELQP 75 (236)
T ss_pred CeEEeccccccCCH----HHHHHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEEeCCCCCC
Confidence 68999999999864 34455555554 57899999999999999999999999887889999999999987655556
Q ss_pred cccHHHHhccCCChHHHHHHHhcCCCCcccccCCCccee
Q 040434 91 DDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWM 129 (141)
Q Consensus 91 d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~ 129 (141)
+..|...+...|....+.+++..++++..+....+..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (236)
T TIGR02471 76 DRFWQKHIDHDWRRQAVVEALADIPGLTLQDDQEQGPFK 114 (236)
T ss_pred ChhHHHHHhcCCCHHHHHHHHhcCCCcEeCChhcCCCee
Confidence 677888788888877788888888887666554444455
No 5
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.78 E-value=1.7e-18 Score=134.64 Aligned_cols=74 Identities=23% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCC-CEEEecCCeEEEE
Q 040434 7 SARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTP-DITIMSVGTEIVY 84 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p-~~~I~~nGa~I~~ 84 (141)
|+.||||+||||||+++++. ++.+.++++ +++++|+.|++||||++..+.++++++++..+ +++||+||+.|++
T Consensus 1 m~~kli~~DlDGTLl~~~~~i~~~~~~ai~----~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~ 76 (270)
T PRK10513 1 MAIKLIAIDMDGTLLLPDHTISPAVKQAIA----AARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQK 76 (270)
T ss_pred CceEEEEEecCCcCcCCCCccCHHHHHHHH----HHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEE
Confidence 35799999999999998643 345555554 45678999999999999999999999887643 5899999999996
No 6
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.77 E-value=2e-18 Score=133.91 Aligned_cols=94 Identities=17% Similarity=0.083 Sum_probs=69.5
Q ss_pred CCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 7 SARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
|+.|+||+||||||++++.. ++.+.+++. +++++|+.|++||||++..+.++++++++.. ++||+||+.|++.
T Consensus 1 M~~kli~~DlDGTLl~~~~~i~~~~~~ai~----~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~--~~I~~NGa~i~d~ 74 (272)
T PRK10530 1 MTYRVIALDLDGTLLTPKKTILPESLEALA----RAREAGYKVIIVTGRHHVAIHPFYQALALDT--PAICCNGTYLYDY 74 (272)
T ss_pred CCccEEEEeCCCceECCCCccCHHHHHHHH----HHHHCCCEEEEEcCCChHHHHHHHHhcCCCC--CEEEcCCcEEEec
Confidence 35799999999999988753 345555554 4567899999999999999999999987653 4999999999963
Q ss_pred --CCccccccHHHHhccCCChHHHHHHHhcC
Q 040434 86 --ESMVHDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 86 --~~~~~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
++.. ....++.+.+.++++.+
T Consensus 75 ~~~~~l--------~~~~l~~~~~~~i~~~~ 97 (272)
T PRK10530 75 QAKKVL--------EADPLPVQQALQVIEML 97 (272)
T ss_pred CCCEEE--------EecCCCHHHHHHHHHHH
Confidence 2222 23344566666655544
No 7
>PTZ00174 phosphomannomutase; Provisional
Probab=99.76 E-value=2.7e-18 Score=133.01 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=59.6
Q ss_pred CCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 7 SARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
|+.||||+||||||++++.. ++.+.+++ ++++++|+.|++||||++..+.+.+........+++||.||+.|+..
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai----~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~~~~~~~I~~NGa~I~~~ 78 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTL----AKLKSKGFKIGVVGGSDYPKIKEQLGEDVLEDFDYVFSENGLVAYKD 78 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHH----HHHHHCCCEEEEEcCCCHHHHHHHHhhhhhcccCeEEeCCceEEEEC
Confidence 57899999999999998753 33454444 45568899999999999999988886432223467899999999975
Q ss_pred CC
Q 040434 86 ES 87 (141)
Q Consensus 86 ~~ 87 (141)
++
T Consensus 79 ~~ 80 (247)
T PTZ00174 79 GE 80 (247)
T ss_pred Ce
Confidence 43
No 8
>PRK10976 putative hydrolase; Provisional
Probab=99.75 E-value=9.6e-18 Score=130.25 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=69.1
Q ss_pred ceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE-CC
Q 040434 9 RLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVY-GE 86 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~-~~ 86 (141)
.||||+||||||+++++. ++.+.++++ +++++|++|++||||++..+.++++.+++. .++||+||+.|++ ++
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~ai~----~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~--~~~I~~NGa~i~~~~~ 75 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKETLK----LLTARGIHFVFATGRHHVDVGQIRDNLEIK--SYMITSNGARVHDTDG 75 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHHHH----HHHHCCCEEEEEcCCChHHHHHHHHhcCCC--CeEEEcCCcEEECCCC
Confidence 589999999999998753 345555554 456899999999999999999999998764 4699999999996 33
Q ss_pred CccccccHHHHhccCCChHHHHHHHhcC
Q 040434 87 SMVHDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 87 ~~~~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
+.+ ....++.+.+.++++.+
T Consensus 76 ~~i--------~~~~l~~~~~~~i~~~~ 95 (266)
T PRK10976 76 NLI--------FSHNLDRDIASDLFGVV 95 (266)
T ss_pred CEe--------hhhcCCHHHHHHHHHhh
Confidence 222 23345566666666544
No 9
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.75 E-value=7.7e-18 Score=130.77 Aligned_cols=94 Identities=19% Similarity=0.116 Sum_probs=71.9
Q ss_pred CCceEEEEeCCCCCCCCCCCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 7 SARLMIVSDLDLTMVDHDDGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
++.|+||+||||||++++... +.+.++++ +++++|+.|++||||++..++++++++++.. ++||.||+.|++.
T Consensus 1 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~----~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~--~~I~~NGa~i~~~ 74 (264)
T COG0561 1 MMIKLLAFDLDGTLLDSNKTISPETKEALA----RLREKGVKVVLATGRPLPDVLSILEELGLDG--PLITFNGALIYNG 74 (264)
T ss_pred CCeeEEEEcCCCCccCCCCccCHHHHHHHH----HHHHCCCEEEEECCCChHHHHHHHHHcCCCc--cEEEeCCeEEecC
Confidence 467999999999999998642 34444444 4568999999999999999999999988764 6999999999987
Q ss_pred CCccccccHHHHhccCCChHHHHHHHhcC
Q 040434 86 ESMVHDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 86 ~~~~~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
++.. ....++.+.+.+++...
T Consensus 75 ~~~i--------~~~~l~~~~~~~i~~~~ 95 (264)
T COG0561 75 GELL--------FQKPLSREDVEELLELL 95 (264)
T ss_pred CcEE--------eeecCCHHHHHHHHHHH
Confidence 4433 33455566666655443
No 10
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.74 E-value=1.7e-17 Score=129.41 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred ceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE-CC
Q 040434 9 RLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVY-GE 86 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~-~~ 86 (141)
.||||+||||||++++.. ++.+.+++++ ++++|+.|++||||++..+.++++++++. .++||+||+.|++ ++
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~ai~~----l~~~G~~~~iaTGR~~~~~~~~~~~l~~~--~~~I~~NGa~I~~~~~ 75 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLSTLAR----LRERDITLTFATGRHVLEMQHILGALSLD--AYLITGNGTRVHSLEG 75 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHHHHH----HHHCCCEEEEECCCCHHHHHHHHHHcCCC--CcEEecCCcEEEcCCC
Confidence 689999999999987643 3456666554 46789999999999999999999998865 4699999999996 33
Q ss_pred CccccccHHHHhccCCChHHHHHHHhcC
Q 040434 87 SMVHDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 87 ~~~~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
+.. .....+.+.+.++++.+
T Consensus 76 ~~l--------~~~~i~~~~~~~i~~~~ 95 (272)
T PRK15126 76 ELL--------HRQDLPADVAELVLHQQ 95 (272)
T ss_pred CEE--------EeecCCHHHHHHHHHHh
Confidence 211 23344556666665443
No 11
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.71 E-value=5.8e-17 Score=126.79 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=60.3
Q ss_pred CCceEEEEeCCCCCCCCCCCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 7 SARLMIVSDLDLTMVDHDDGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
.++++||+||||||++++... +.+.+++ ++++++|++|++||||++..+.++++++++. ..++||+||+.||..
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~i~~~~~~ai----~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~-~~~~I~~NGa~I~~~ 79 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTYDWQPAAPWL----TRLREAQVPVILCSSKTAAEMLPLQQTLGLQ-GLPLIAENGAVIQLD 79 (271)
T ss_pred CCCeEEEEeCccCCcCCCCcCcHHHHHHH----HHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC-CCcEEEeCCCEEEec
Confidence 468999999999999876432 3444444 4556789999999999999999999998874 246999999999975
No 12
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.69 E-value=8.4e-17 Score=122.16 Aligned_cols=72 Identities=18% Similarity=0.116 Sum_probs=59.3
Q ss_pred CceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 8 ARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
+.|+|++||||||++++.. ++.+.+++. +++++|++|++||||++..+.++++.+++. +++||.||+.|++.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~----~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~--~~~i~~nGa~i~~~ 74 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEAIR----KAEKLGIPVILATGNVLCFARAAAKLIGTS--GPVIAENGGVISVG 74 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHHHH----HHHHCCCEEEEEcCCchHHHHHHHHHhCCC--CcEEEecCeEEEEc
Confidence 4699999999999988753 334555554 456789999999999999999999988764 46999999999974
No 13
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.68 E-value=2.1e-16 Score=125.26 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=58.8
Q ss_pred ceEEEEeCCCCCCCCCCCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 9 RLMIVSDLDLTMVDHDDGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
+|+|||||||||++++... +.+.+++ ++++++|+.||+||||+..++..+.+++++.. ++||.||+.|+...
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~aL----~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~--p~I~eNGA~I~~p~ 73 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQAL----AALERRSIPLVLYSLRTRAQLEHLCRQLRLEH--PFICEDGSAIYVPE 73 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHHH----HHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC--eEEEeCCcEEEEcc
Confidence 4899999999999976432 2344444 45567899999999999999999999988753 69999999999753
No 14
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.67 E-value=3.7e-16 Score=120.82 Aligned_cols=90 Identities=21% Similarity=0.218 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC-Cc
Q 040434 11 MIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE-SM 88 (141)
Q Consensus 11 li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~-~~ 88 (141)
||++||||||++++.. ++.+.++++ +++++|+.|++||||++..+.++++++++. .++||.||+.|++.. +.
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~i~----~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~--~~~I~~NGa~i~~~~~~~ 74 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEALA----KLREKGIKVVLATGRPYKEVKNILKELGLD--TPFITANGAAVIDDQGEI 74 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHHHH----HHHHCCCeEEEEeCCCHHHHHHHHHHcCCC--CCEEEcCCcEEECCCCCE
Confidence 6899999999998643 234555554 456789999999999999999999998764 369999999999752 22
Q ss_pred cccccHHHHhccCCChHHHHHHHhcC
Q 040434 89 VHDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 89 ~~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
+ .....+.+.+.++++.+
T Consensus 75 i--------~~~~i~~~~~~~i~~~~ 92 (256)
T TIGR00099 75 L--------YKKPLDLDLVEEILNFL 92 (256)
T ss_pred E--------eecCCCHHHHHHHHHHH
Confidence 2 23344566666655544
No 15
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.67 E-value=5.1e-16 Score=139.26 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=96.7
Q ss_pred ceEEE--EeCCCCCCCCCCCChHHHHHHHHHHHH-HhCCCceEEEEcCCCHHHHHHHHHhCCCC--CCCEEEecCCeEEE
Q 040434 9 RLMIV--SDLDLTMVDHDDGENLSLLRFNALWEA-HYRQDSLLVFSTGRSPTIYKQLRKEKPLL--TPDITIMSVGTEIV 83 (141)
Q Consensus 9 ~~li~--~DlDGTLl~~~~~~~~~~~~l~~~l~~-~~~~g~~~viaTGR~~~~~~~~~~~~~l~--~p~~~I~~nGa~I~ 83 (141)
++|++ +|+|+| .+. .+.++++.+.+.+ ..+..+.|+++|||++.++..++++.+++ .||++||+.|++||
T Consensus 770 ~~~~via~D~d~~-~~~----~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIy 844 (1050)
T TIGR02468 770 KRLFVIAVDCYDD-KDL----LQIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICNSGSELY 844 (1050)
T ss_pred ceEEEEEeccCCC-CCh----HHHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCCccee
Confidence 34544 999999 332 3567776665432 12355999999999999999999999998 89999999999999
Q ss_pred EC-------CCccccccHHHHhccCCChHHHHHHHhcCCC------------CcccccCCCccee--ee
Q 040434 84 YG-------ESMVHDDGWENYLNHKWDRGIVLEETAKFPE------------LAFQVCLFFSKWM--VL 131 (141)
Q Consensus 84 ~~-------~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~------------l~~~~~~~q~~~~--~~ 131 (141)
+. +.+.+|..|..+|+..|.++.+++.+..+++ +.+|++..|++|| ||
T Consensus 845 y~~~~~~~~~~~~~D~~w~~hI~~rW~ge~~r~~L~~l~~~~~~~~~~~~~~l~~Q~~~~q~~~k~SY~ 913 (1050)
T TIGR02468 845 YPSLNGSEEGKLVADQDYHSHIEYRWGGEGLRKTLVKWAASINEKKGENEEQIVEEDEESSTDHCYAFK 913 (1050)
T ss_pred ccCcCCCCCCCceECHHHHHHHHccCCcHHHHHHHHHHhhhcccccccccccceecChhhCCCceEEEE
Confidence 95 4678999999999999999988877766654 8999999999997 55
No 16
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.64 E-value=7.1e-16 Score=116.55 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=58.1
Q ss_pred ceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 9 RLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
.|+|++||||||++++.. .+.+.+++. +++++|+.|++||||++..+.++++.+++. .++||+||+.|++.+
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~i~----~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~--~~~i~~NGa~i~~~~ 73 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEAIR----KAEKKGIPVSLVTGNTVPFARALAVLIGTS--GPVVAENGGVIFYNK 73 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHHHH----HHHHCCCEEEEEcCCcchhHHHHHHHhCCC--CcEEEccCcEEEeCC
Confidence 379999999999987653 234555544 456789999999999999999999987754 359999999999854
No 17
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.64 E-value=5.8e-16 Score=117.27 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=56.2
Q ss_pred EEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 11 MIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 11 li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
+||+||||||++++.. .+.+.+. |++++++|++|++||||+...+.++++.+++. +.++||+|||.|++.
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~----l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~-~~~~I~~NGa~i~~~ 71 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPW----LTRLQEAGIPVILCTSKTAAEVEYLQKALGLT-GDPYIAENGAAIHLE 71 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHH----HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-CCcEEEeCCcEEEcC
Confidence 6899999999987642 2234334 34456789999999999999999999998874 246999999999973
No 18
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.64 E-value=6.8e-16 Score=116.67 Aligned_cols=69 Identities=30% Similarity=0.338 Sum_probs=55.8
Q ss_pred EEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 12 IVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 12 i~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
|++||||||++++.. .+.+.+++ ++++++|+.|++||||++..+.++++.+++ ++++||.||+.|++.+
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al----~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~--~~~~i~~nGa~i~~~~ 70 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEAI----RKAESVGIPVVLVTGNSVQFARALAKLIGT--PDPVIAENGGEISYNE 70 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHHH----HHHHHCCCEEEEEcCCchHHHHHHHHHhCC--CCeEEEecCcEEEeCC
Confidence 689999999998643 23444444 445678999999999999999999998774 4679999999999854
No 19
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.64 E-value=1.4e-15 Score=119.02 Aligned_cols=74 Identities=24% Similarity=0.260 Sum_probs=59.3
Q ss_pred CCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 7 SARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
++.|+||+||||||++++.. .+.+.+.+ ++++++|+.|++||||+...+..+++.+++. .++||.||+.||+.
T Consensus 2 ~~~kli~~DlDGTLl~~~~~~~~~~~~ai----~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~--~~~i~~nGa~i~~~ 75 (273)
T PRK00192 2 MMKLLVFTDLDGTLLDHHTYSYEPAKPAL----KALKEKGIPVIPCTSKTAAEVEVLRKELGLE--DPFIVENGAAIYIP 75 (273)
T ss_pred CcceEEEEcCcccCcCCCCcCcHHHHHHH----HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC--CCEEEEcCcEEEec
Confidence 56899999999999986532 23344443 4556789999999999999999999998875 35999999999974
Q ss_pred C
Q 040434 86 E 86 (141)
Q Consensus 86 ~ 86 (141)
+
T Consensus 76 ~ 76 (273)
T PRK00192 76 K 76 (273)
T ss_pred c
Confidence 3
No 20
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.63 E-value=1.3e-15 Score=114.97 Aligned_cols=89 Identities=27% Similarity=0.229 Sum_probs=66.5
Q ss_pred EEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE-CCCcc
Q 040434 12 IVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVY-GESMV 89 (141)
Q Consensus 12 i~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~-~~~~~ 89 (141)
||+||||||++++.. +++++++++. ++++|++|++||||++..+++++..+++. +++|++||+.|+. .++..
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~al~~----l~~~g~~~~i~TGR~~~~~~~~~~~~~~~--~~~I~~nGa~i~~~~~~~l 74 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEALKE----LQEKGIKLVIATGRSYSSIKRLLKELGID--DYFICSNGALIDDPKGKIL 74 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHHHHH----HHHTTCEEEEECSSTHHHHHHHHHHTTHC--SEEEEGGGTEEEETTTEEE
T ss_pred cEEEECCceecCCCeeCHHHHHHHHh----hcccceEEEEEccCcccccccccccccch--hhhcccccceeeecccccc
Confidence 799999999998754 3466666654 35689999999999999999999997764 6899999999944 23222
Q ss_pred ccccHHHHhccCCChHHHHHHHhcC
Q 040434 90 HDDGWENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 90 ~d~~~~~~i~~~~~~~~v~~il~~~ 114 (141)
.....+.+.+.++++.+
T Consensus 75 --------~~~~i~~~~~~~i~~~~ 91 (254)
T PF08282_consen 75 --------YEKPIDSDDVKKILKYL 91 (254)
T ss_dssp --------EEESB-HHHHHHHHHHH
T ss_pred --------hhhheeccchhheeehh
Confidence 33445566666666554
No 21
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.63 E-value=2.3e-15 Score=115.38 Aligned_cols=99 Identities=14% Similarity=0.067 Sum_probs=68.1
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCccc
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESMVH 90 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~~~ 90 (141)
+|++||||||++++...+.+.+++ ++++++|+.+++||||+...+..+++++++. +++||.||+.|++......
T Consensus 1 li~~DlDGTLl~~~~~~~~~~~ai----~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~--~~~I~~NGa~I~~~~~~~~ 74 (225)
T TIGR02461 1 VIFTDLDGTLLPPGYEPGPAREAL----EELKDLGFPIVFVSSKTRAEQEYYREELGVE--PPFIVENGGAIFIPRGYFP 74 (225)
T ss_pred CEEEeCCCCCcCCCCCchHHHHHH----HHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC--CcEEEcCCcEEEecCcccc
Confidence 589999999999653333444444 4456789999999999999999999998875 3599999999998432100
Q ss_pred --c----c-cHHHHhccCCChHHHHHHHhcCC
Q 040434 91 --D----D-GWENYLNHKWDRGIVLEETAKFP 115 (141)
Q Consensus 91 --d----~-~~~~~i~~~~~~~~v~~il~~~~ 115 (141)
. . .-...+...++.+.++++++.+.
T Consensus 75 ~~~~~~~~~~~~~i~~~~l~~~~~~~il~~~~ 106 (225)
T TIGR02461 75 FPVGAGREVGNYEVIELGKPVAKIRAALKEAE 106 (225)
T ss_pred ccccccccCCCeEEEEcCCCHHHHHHHHHHHH
Confidence 0 0 00112344566777777666543
No 22
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.63 E-value=2.2e-15 Score=116.81 Aligned_cols=95 Identities=18% Similarity=0.069 Sum_probs=68.3
Q ss_pred EEEEeCCCCCCCCCC-CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCcc
Q 040434 11 MIVSDLDLTMVDHDD-GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESMV 89 (141)
Q Consensus 11 li~~DlDGTLl~~~~-~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~~ 89 (141)
||++||||||++++. ..+.+.+.+ ++++++|+.|++||||++..+.++++++++. +++||+||+.|+..+...
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~i----~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~--~~~I~~NGa~i~~~~~~~ 74 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEVL----ERLQELGIPVIPCTSKTAAEVEYLRKELGLE--DPFIVENGGAIYGPRGWF 74 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHHH----HHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--CcEEEcCCeEEEeCCCcc
Confidence 689999999999875 323344444 4456789999999999999999999998764 679999999999843221
Q ss_pred -ccccHHHHhccCCChHHHHHHHhc
Q 040434 90 -HDDGWENYLNHKWDRGIVLEETAK 113 (141)
Q Consensus 90 -~d~~~~~~i~~~~~~~~v~~il~~ 113 (141)
.+..| .....|+.+.+.++++.
T Consensus 75 ~~~~~~--~~~~~i~~~~~~~il~~ 97 (256)
T TIGR01486 75 TEPEYP--VIALGIPYEKIRARLEE 97 (256)
T ss_pred cCCCeE--EEEcCCCHHHHHHHHHH
Confidence 11111 23456666777666653
No 23
>PLN02887 hydrolase family protein
Probab=99.61 E-value=1.8e-15 Score=129.80 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCC-------EEE
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPD-------ITI 75 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~-------~~I 75 (141)
+=..+.|+||+||||||+++++. ++.++++++ +++++|+.|++||||++..+..+++++++..++ ++|
T Consensus 303 ~~~~~iKLIa~DLDGTLLn~d~~Is~~t~eAI~----kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I 378 (580)
T PLN02887 303 FYKPKFSYIFCDMDGTLLNSKSQISETNAKALK----EALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGV 378 (580)
T ss_pred hhccCccEEEEeCCCCCCCCCCccCHHHHHHHH----HHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEE
Confidence 33467899999999999998753 345666654 446799999999999999999999988765332 466
Q ss_pred ecCCeEEEEC-CCccccccHHHHhccCCChHHHHHHHhc
Q 040434 76 MSVGTEIVYG-ESMVHDDGWENYLNHKWDRGIVLEETAK 113 (141)
Q Consensus 76 ~~nGa~I~~~-~~~~~d~~~~~~i~~~~~~~~v~~il~~ 113 (141)
|+||+.||+. ++.+ ....++.+.+.+++..
T Consensus 379 ~~NGA~I~d~~g~~I--------~~~~L~~e~v~eIi~~ 409 (580)
T PLN02887 379 FLQGLLVYGRQGREI--------YRSNLDQEVCREACLY 409 (580)
T ss_pred eecCeEEEECCCcEE--------EEEeCCHHHHHHHHHH
Confidence 7899999963 2211 2334556666666543
No 24
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.58 E-value=9.9e-15 Score=126.22 Aligned_cols=105 Identities=16% Similarity=0.065 Sum_probs=74.3
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
..++.+|+|+|||||||++++.. .+.+.++ |++++++|+.|++||||++..+..+++++++. +++||.||+.|
T Consensus 411 ~~~~~~KLIfsDLDGTLLd~d~~i~~~t~eA----L~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~--~~~I~eNGA~I 484 (694)
T PRK14502 411 SSGQFKKIVYTDLDGTLLNPLTYSYSTALDA----LRLLKDKELPLVFCSAKTMGEQDLYRNELGIK--DPFITENGGAI 484 (694)
T ss_pred CcCceeeEEEEECcCCCcCCCCccCHHHHHH----HHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC--CeEEEcCCCEE
Confidence 34567899999999999998643 2234444 45566889999999999999999999998764 56999999999
Q ss_pred EECCCccc---c-c-cH--HHHhccCCChHHHHHHHhcC
Q 040434 83 VYGESMVH---D-D-GW--ENYLNHKWDRGIVLEETAKF 114 (141)
Q Consensus 83 ~~~~~~~~---d-~-~~--~~~i~~~~~~~~v~~il~~~ 114 (141)
+....... + . .. .......++.+.+.++++.+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~iI~~~~l~~e~i~~IL~~l 523 (694)
T PRK14502 485 FIPKDYFRLPFAYDRVAGNYLVIELGMAYKDIRHILKKA 523 (694)
T ss_pred EECCCcccccccccccCCCeEEEEcCCCHHHHHHHHHHH
Confidence 98542110 0 0 00 01234466777777777655
No 25
>PLN02423 phosphomannomutase
Probab=99.57 E-value=1.2e-14 Score=112.78 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=62.8
Q ss_pred CceEEEEeCCCCCCCCCCCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 8 ARLMIVSDLDLTMVDHDDGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
++.++|+||||||+++++.. +.+.++++ +++++ +.|++||||++..+...+.......+.++||.||+.|+.++
T Consensus 6 ~~~i~~~D~DGTLl~~~~~i~~~~~~ai~----~l~~~-i~fviaTGR~~~~~~~~~~~~~~~~~~~~I~~NGa~i~~~g 80 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRKEATPEMLEFMK----ELRKV-VTVGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHKDG 80 (245)
T ss_pred cceEEEEeccCCCcCCCCcCCHHHHHHHH----HHHhC-CEEEEECCcCHHHHHHHhcccccccCCEEEECCceEEEeCC
Confidence 44577799999999887542 34444444 44555 99999999999988877765311223479999999999766
Q ss_pred CccccccHHHHhccCCChHHHHHHHhc
Q 040434 87 SMVHDDGWENYLNHKWDRGIVLEETAK 113 (141)
Q Consensus 87 ~~~~d~~~~~~i~~~~~~~~v~~il~~ 113 (141)
+.+ +...++...+.+.+.++++.
T Consensus 81 ~~i----~~~~l~~~l~~~~~~~ii~~ 103 (245)
T PLN02423 81 KLI----GTQSLKSFLGEDKLKEFINF 103 (245)
T ss_pred EEE----EEecccccCCHHHHHHHHHH
Confidence 443 22223333344555555443
No 26
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.47 E-value=1.7e-13 Score=102.48 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=54.2
Q ss_pred EEEEeCCCCCCCCC-CC-ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCC
Q 040434 11 MIVSDLDLTMVDHD-DG-ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGES 87 (141)
Q Consensus 11 li~~DlDGTLl~~~-~~-~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~ 87 (141)
||++|+||||++++ .. .+...+++ +++.++|+.|+++|||+...+.++++.+ + .++|+.||+.|+..++
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~l----~~l~~~g~~~~i~TGR~~~~~~~~~~~~--~--~~~i~~nGa~i~~~~~ 71 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEAL----ERLREAGVKVVLVTGRSLAEIKELLKQL--P--LPLIAENGALIFYPGE 71 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHHH----HHHHHCCCEEEEECCCCHHHHHHHHHhC--C--CCEEECCCcEEEECCE
Confidence 68999999999875 32 23344444 4456788999999999999999999873 2 5699999999998543
No 27
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.41 E-value=9.2e-13 Score=103.36 Aligned_cols=69 Identities=20% Similarity=0.065 Sum_probs=52.2
Q ss_pred ceEEEEeCCCCCCCCC-----C-CChHHHHHHHHHHHHHhC-CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeE
Q 040434 9 RLMIVSDLDLTMVDHD-----D-GENLSLLRFNALWEAHYR-QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTE 81 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~-----~-~~~~~~~~l~~~l~~~~~-~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~ 81 (141)
..+|++|+||||++.. . ..+...+.+ .++.+ +|+.|+++|||++..+.++++.+++ .+||+||++
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L----~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~----~~i~~nGa~ 85 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVPDNILQGL----QLLATANDGALALISGRSMVELDALAKPYRF----PLAGVHGAE 85 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCCHHHHHHH----HHHHhCCCCcEEEEeCCCHHHHHHhcCcccc----eEEEeCCCe
Confidence 4799999999999842 1 122344444 44455 7999999999999999999876542 489999999
Q ss_pred EEEC
Q 040434 82 IVYG 85 (141)
Q Consensus 82 I~~~ 85 (141)
|++.
T Consensus 86 i~~~ 89 (266)
T PRK10187 86 RRDI 89 (266)
T ss_pred eecC
Confidence 9864
No 28
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.30 E-value=1.2e-11 Score=90.25 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=61.3
Q ss_pred EEEEeCCCCCCCCC-----------CCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHH---HHHHh-----CCCCC
Q 040434 11 MIVSDLDLTMVDHD-----------DGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYK---QLRKE-----KPLLT 70 (141)
Q Consensus 11 li~~DlDGTLl~~~-----------~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~---~~~~~-----~~l~~ 70 (141)
+|++||||||++++ ... +.+.+.+ ++++++|++|+++|||+...+. +.+.+ .+++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~----~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp- 75 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLY----RDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP- 75 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHH----HHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC-
Confidence 58999999999987 222 2333333 4456789999999999999984 67766 2343
Q ss_pred CCEEEecCCeEEEE-CCCccccccHHHHhccCCChHHHHHHHhcCC
Q 040434 71 PDITIMSVGTEIVY-GESMVHDDGWENYLNHKWDRGIVLEETAKFP 115 (141)
Q Consensus 71 p~~~I~~nGa~I~~-~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~ 115 (141)
+..++++||+.++. .++.... . ...+..+.+..+.+.+|
T Consensus 76 ~g~li~~~g~~~~~~~~e~i~~----~--~~~~K~~~l~~i~~~~~ 115 (157)
T smart00775 76 HGPVLLSPDRLFAALHREVISK----K--PEVFKIACLRDIKSLFP 115 (157)
T ss_pred CceEEEcCCcchhhhhcccccC----C--HHHHHHHHHHHHHHhcC
Confidence 25799999999864 2222100 0 00123456777777665
No 29
>PLN03017 trehalose-phosphatase
Probab=99.20 E-value=1.7e-10 Score=94.31 Aligned_cols=71 Identities=18% Similarity=0.053 Sum_probs=51.9
Q ss_pred CCCCceEEEEeCCCCCC---C-CCC--CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecC
Q 040434 5 DGSARLMIVSDLDLTMV---D-HDD--GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSV 78 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl---~-~~~--~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~n 78 (141)
+..+..+||+|+||||+ + .+. ..++..+++ .++. +++.|+|+|||++..+.++.. +. ..++|++|
T Consensus 107 ~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL----~~La-~~~~vaIvSGR~~~~l~~~~~---l~-~l~l~g~h 177 (366)
T PLN03017 107 SRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTV----KKLA-KCFPTAIVTGRCIDKVYNFVK---LA-ELYYAGSH 177 (366)
T ss_pred hcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHH----HHHh-cCCcEEEEeCCCHHHHHHhhc---cc-CceEEEcC
Confidence 44567899999999999 3 222 223344444 3444 689999999999999999843 32 34799999
Q ss_pred CeEEEE
Q 040434 79 GTEIVY 84 (141)
Q Consensus 79 Ga~I~~ 84 (141)
|++|..
T Consensus 178 Ga~i~~ 183 (366)
T PLN03017 178 GMDIKG 183 (366)
T ss_pred CcEEec
Confidence 999976
No 30
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.13 E-value=5.7e-11 Score=104.50 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=55.3
Q ss_pred CCCCceEEEEeCCCCCCCCCC-CCh-HHHHHHHHHHHHHhC-CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeE
Q 040434 5 DGSARLMIVSDLDLTMVDHDD-GEN-LSLLRFNALWEAHYR-QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTE 81 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~-~~~-~~~~~l~~~l~~~~~-~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~ 81 (141)
..+++++|++|+||||++... +.. ...+.+.+.|+++.+ .|+.|+++|||+...+.+.+..++ ..+|++||+.
T Consensus 488 ~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~----l~liaenG~~ 563 (726)
T PRK14501 488 RAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP----IHLVAEHGAW 563 (726)
T ss_pred HhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC----eEEEEeCCEE
Confidence 346789999999999998531 100 011223333445556 599999999999999999886543 4699999999
Q ss_pred EEEC
Q 040434 82 IVYG 85 (141)
Q Consensus 82 I~~~ 85 (141)
++..
T Consensus 564 i~~~ 567 (726)
T PRK14501 564 SRAP 567 (726)
T ss_pred EeCC
Confidence 9853
No 31
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.11 E-value=8.6e-10 Score=77.89 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=42.3
Q ss_pred eEEEEeCCCCCCCCCC-C------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHH---------------HHHHHhCC
Q 040434 10 LMIVSDLDLTMVDHDD-G------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIY---------------KQLRKEKP 67 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~-~------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~---------------~~~~~~~~ 67 (141)
|+|++||||||+.++. . .+.++++ ++++.++|+.|+++|||+.... ...+++.+
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~----L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ 77 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEK----LRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHN 77 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHH----HHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcC
Confidence 6999999999997642 1 1123333 3445578999999999998753 45677778
Q ss_pred CCCCCEEE
Q 040434 68 LLTPDITI 75 (141)
Q Consensus 68 l~~p~~~I 75 (141)
++.-..+.
T Consensus 78 ipYd~l~~ 85 (126)
T TIGR01689 78 VPYDEIYV 85 (126)
T ss_pred CCCceEEe
Confidence 76533333
No 32
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.09 E-value=4.5e-10 Score=89.26 Aligned_cols=81 Identities=16% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC-CCEEEecCCeE
Q 040434 3 RLDGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT-PDITIMSVGTE 81 (141)
Q Consensus 3 ~~~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~-p~~~I~~nGa~ 81 (141)
.+-+..+++||+||||||+++.....-.-+...++|.+++++|++++++|+++...+...++.+|+.. ++ +|.++|..
T Consensus 120 ~~~~~~~kvIvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFd-vIIs~Gdv 198 (301)
T TIGR01684 120 SKVFEPPHVVVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFD-IIISGGHK 198 (301)
T ss_pred ccccccceEEEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccC-EEEECCcc
Confidence 35567889999999999999974310001222333455678899999999999999999999999864 34 56667877
Q ss_pred EEE
Q 040434 82 IVY 84 (141)
Q Consensus 82 I~~ 84 (141)
...
T Consensus 199 ~~~ 201 (301)
T TIGR01684 199 AEE 201 (301)
T ss_pred ccC
Confidence 655
No 33
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.07 E-value=8.2e-10 Score=84.44 Aligned_cols=75 Identities=16% Similarity=0.106 Sum_probs=58.2
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
-.+++||+||||||+++...-..+-..+. ++.+.|+.+|+||..+..++..+.+.+++. |-.+|+.||+.||...
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~~pA~pv~~----el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~-~~p~iaEnG~aI~~p~ 79 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEWQPAAPVLL----ELKDAGVPVILCSSKTRAEMLYLQKSLGVQ-GLPLIAENGAAIYLPK 79 (274)
T ss_pred ccceEEEEcccCcccCCCCCCCccchHHH----HHHHcCCeEEEeccchHHHHHHHHHhcCCC-CCceeecCCceEEecc
Confidence 45789999999999996522112333333 335679999999999999999999999886 3459999999999853
No 34
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=98.96 E-value=3.4e-09 Score=81.93 Aligned_cols=72 Identities=15% Similarity=-0.039 Sum_probs=48.3
Q ss_pred CCceEEEEeCCCCCCCCCC-C-----ChHHHHHHHHHHHHHh-CCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCC
Q 040434 7 SARLMIVSDLDLTMVDHDD-G-----ENLSLLRFNALWEAHY-RQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVG 79 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~-~-----~~~~~~~l~~~l~~~~-~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nG 79 (141)
++++++++|+||||..... + .+...+.| +++. ..+..++|+|||++.++...+. ++ .-.++++||
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L----~~L~~~~~~~v~ivSGR~~~~~~~~~~---~~-~~~l~g~hG 72 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTIL----QKLAARPHNAIWIISGRKFLEKWLGVK---LP-GLGLAGEHG 72 (244)
T ss_pred CCcEEEEEecCccccCCcCCCcccCCCHHHHHHH----HHHHhCCCCeEEEEECCChhhccccCC---CC-ceeEEeecC
Confidence 3578999999999997531 1 12333444 4444 3567889999998877665442 22 224999999
Q ss_pred eEEEECC
Q 040434 80 TEIVYGE 86 (141)
Q Consensus 80 a~I~~~~ 86 (141)
++++.++
T Consensus 73 ~~~~~~g 79 (244)
T TIGR00685 73 CEMKDNG 79 (244)
T ss_pred EEEecCC
Confidence 9998643
No 35
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=98.95 E-value=3.7e-09 Score=94.58 Aligned_cols=75 Identities=11% Similarity=0.038 Sum_probs=56.2
Q ss_pred CCCCceEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHH-hCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCC
Q 040434 5 DGSARLMIVSDLDLTMVDHDD----GENLSLLRFNALWEAH-YRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVG 79 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~----~~~~~~~~l~~~l~~~-~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nG 79 (141)
..+++++|++|+||||++... +.+...+.| .++ .+.|+.|+++|||++..+.+.+..+. .-.+|++||
T Consensus 592 ~~~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L----~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~---~l~laaEHG 664 (854)
T PLN02205 592 KRTTTRAILLDYDGTLMPQASIDKSPSSKSIDIL----NTLCRDKNNMVFIVSARSRKTLADWFSPCE---KLGIAAEHG 664 (854)
T ss_pred HhhcCeEEEEecCCcccCCccccCCCCHHHHHHH----HHHHhcCCCEEEEEeCCCHHHHHHHhCCCC---CeEEEEeCC
Confidence 345789999999999997652 122333444 443 46899999999999999999997532 236999999
Q ss_pred eEEEECC
Q 040434 80 TEIVYGE 86 (141)
Q Consensus 80 a~I~~~~ 86 (141)
+++...+
T Consensus 665 ~~ir~~~ 671 (854)
T PLN02205 665 YFLRLKR 671 (854)
T ss_pred EEEEeCC
Confidence 9998654
No 36
>PLN02151 trehalose-phosphatase
Probab=98.94 E-value=7.8e-09 Score=84.27 Aligned_cols=71 Identities=14% Similarity=-0.014 Sum_probs=51.2
Q ss_pred CCCCceEEEEeCCCCCCCCC----C--CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecC
Q 040434 5 DGSARLMIVSDLDLTMVDHD----D--GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSV 78 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~----~--~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~n 78 (141)
+..++.++++|+||||.+-. . ..+...+.++ ++. ++..++|+|||+...+.+++. +. +-++++++
T Consensus 94 ~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~----~La-~~~~vaIvSGR~~~~l~~~~~---~~-~l~laGsH 164 (354)
T PLN02151 94 SEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVR----KLA-KCFPTAIVSGRCREKVSSFVK---LT-ELYYAGSH 164 (354)
T ss_pred hcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHH----HHh-cCCCEEEEECCCHHHHHHHcC---Cc-cceEEEeC
Confidence 44567899999999999432 2 1223444443 444 567999999999999999885 22 24689999
Q ss_pred CeEEEE
Q 040434 79 GTEIVY 84 (141)
Q Consensus 79 Ga~I~~ 84 (141)
|+++..
T Consensus 165 G~e~~~ 170 (354)
T PLN02151 165 GMDIKG 170 (354)
T ss_pred Cceeec
Confidence 999875
No 37
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.90 E-value=4.5e-09 Score=83.65 Aligned_cols=79 Identities=18% Similarity=0.067 Sum_probs=56.2
Q ss_pred CCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCC-CEEEecCCeEEE
Q 040434 5 DGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTP-DITIMSVGTEIV 83 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p-~~~I~~nGa~I~ 83 (141)
-+..+++|++||||||+++.....-.-....+.|.+++++|++++++|+.+...+...++.+++..+ + +|.++|....
T Consensus 124 ~~~~~~~i~~D~D~TL~~~~~~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFD-vII~~g~i~~ 202 (303)
T PHA03398 124 VWEIPHVIVFDLDSTLITDEEPVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFD-IIICGGRKAG 202 (303)
T ss_pred EeeeccEEEEecCCCccCCCCccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCcccc-EEEECCCccc
Confidence 3456799999999999999753200012223334556789999999998888888999999998643 4 4556777665
Q ss_pred E
Q 040434 84 Y 84 (141)
Q Consensus 84 ~ 84 (141)
.
T Consensus 203 k 203 (303)
T PHA03398 203 E 203 (303)
T ss_pred c
Confidence 4
No 38
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=1.5e-08 Score=79.83 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=70.1
Q ss_pred CCCCCceEEEEeCCCCCCCCCC-CC-hHHHHHHHHHHHHHhC-CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCe
Q 040434 4 LDGSARLMIVSDLDLTMVDHDD-GE-NLSLLRFNALWEAHYR-QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGT 80 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~-~~-~~~~~~l~~~l~~~~~-~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa 80 (141)
+....++++++|+||||...-. +. .....++..+|+++.+ ....++|.|||+...+..++.-.++ .+||+||+
T Consensus 13 ~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i----~l~aehGa 88 (266)
T COG1877 13 YLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGI----GLIAEHGA 88 (266)
T ss_pred cccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc----cEEEecce
Confidence 4456789999999999997652 11 1122344444555554 3567999999999999999973222 49999999
Q ss_pred EEEE-CCCcc---ccccHHHHhccCCChHHHHHHHhcCCCCccccc
Q 040434 81 EIVY-GESMV---HDDGWENYLNHKWDRGIVLEETAKFPELAFQVC 122 (141)
Q Consensus 81 ~I~~-~~~~~---~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~ 122 (141)
++.. ++... ....|...+... ...++..++..||..+..+
T Consensus 89 ~~r~~~g~~~~~~~~~~~~~~~~~v--~~~l~~~v~r~pGs~iE~K 132 (266)
T COG1877 89 EVRDPNGKWWINLAEEADLRWLKEV--AAILEYYVERTPGSYIERK 132 (266)
T ss_pred EEecCCCCeeEecCHHHHhhHHHHH--HHHHHHHhhcCCCeEEEEc
Confidence 9954 33221 111111111111 2456677788888765543
No 39
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=98.84 E-value=5.1e-09 Score=81.33 Aligned_cols=69 Identities=16% Similarity=0.091 Sum_probs=55.1
Q ss_pred eEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC---CCHHHHHHHHHhCCCC-CCCEEEecCCeEE
Q 040434 10 LMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG---RSPTIYKQLRKEKPLL-TPDITIMSVGTEI 82 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG---R~~~~~~~~~~~~~l~-~p~~~I~~nGa~I 82 (141)
+.+++|+||||++.+...+.+.+.++ +++++|++|+++|| |+...+.+.++.+|+. .++-+|+++|+.+
T Consensus 2 ~~~~~D~DGtl~~~~~~i~~a~~~l~----~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~ 74 (249)
T TIGR01457 2 KGYLIDLDGTMYKGKERIPEAETFVH----ELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATA 74 (249)
T ss_pred CEEEEeCCCceEcCCeeCcCHHHHHH----HHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHH
Confidence 68999999999998754444555554 44678999999995 9999999999999886 3577899988764
No 40
>PLN02580 trehalose-phosphatase
Probab=98.76 E-value=4.6e-08 Score=80.59 Aligned_cols=76 Identities=16% Similarity=0.041 Sum_probs=53.1
Q ss_pred CCCCCceEEEEeCCCCCCCCCC-CC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeE
Q 040434 4 LDGSARLMIVSDLDLTMVDHDD-GE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTE 81 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~-~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~ 81 (141)
++..++.++++|+||||.+-.. +. ......+.+.|+++.+. ..++|+|||+...+.+++...+ -++++++|.+
T Consensus 114 ~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l~~~~----l~laGsHG~e 188 (384)
T PLN02580 114 FAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELVGLTE----LYYAGSHGMD 188 (384)
T ss_pred HhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHhCCCC----ccEEEeCCce
Confidence 3556789999999999976542 11 11223444444555444 5799999999999999986322 3589999999
Q ss_pred EEE
Q 040434 82 IVY 84 (141)
Q Consensus 82 I~~ 84 (141)
+..
T Consensus 189 ~~~ 191 (384)
T PLN02580 189 IMG 191 (384)
T ss_pred eec
Confidence 864
No 41
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.62 E-value=9.8e-08 Score=64.94 Aligned_cols=74 Identities=24% Similarity=0.188 Sum_probs=51.5
Q ss_pred EEEEeCCCCCCCCCCCC-----hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEecCCeEEEE
Q 040434 11 MIVSDLDLTMVDHDDGE-----NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMSVGTEIVY 84 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~-----~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~nGa~I~~ 84 (141)
++++|+||||+...... ....+.+.+.+++++++|+.++++|||....+...++..++. .++.++++++.....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYY 80 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhc
Confidence 47999999999887310 011122222334455679999999999999999999998763 356677777766553
No 42
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.60 E-value=3.1e-07 Score=81.97 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=68.6
Q ss_pred CCCCceEEEEeCCCCCCCCCC-C---C-hHHHHHHHHHHHHHh-CCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecC
Q 040434 5 DGSARLMIVSDLDLTMVDHDD-G---E-NLSLLRFNALWEAHY-RQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSV 78 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~-~---~-~~~~~~l~~~l~~~~-~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~n 78 (141)
..++++++++|+||||..... + . ....+.+.+.|+++. ..+..++|+|||+...+.+.+...+ -.+++++
T Consensus 503 ~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~----l~l~aeH 578 (797)
T PLN03063 503 SKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN----IWLAAEN 578 (797)
T ss_pred HhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC----CcEEEeC
Confidence 456679999999999996532 0 0 001123333344444 4689999999999999999997533 2499999
Q ss_pred CeEEEECCCccccccHHHH----hccCCCh---HHHHHHHhcCCCCcccccCC
Q 040434 79 GTEIVYGESMVHDDGWENY----LNHKWDR---GIVLEETAKFPELAFQVCLF 124 (141)
Q Consensus 79 Ga~I~~~~~~~~d~~~~~~----i~~~~~~---~~v~~il~~~~~l~~~~~~~ 124 (141)
|+++...+ ..|... +...|.. ..++...+..||..+..+..
T Consensus 579 G~~~r~~~-----~~w~~~~~~~~~~~w~~~v~~~l~~~~~rtpGs~iE~K~~ 626 (797)
T PLN03063 579 GMFLRHTS-----GEWVTTMPEHMNLDWVDGVKNVFKYFTDRTPRSYVEKSET 626 (797)
T ss_pred CEEEecCC-----CceeeccccccChhHHHHHHHHHHHHHHhCCCcEEEEcCe
Confidence 99986422 224321 1223321 23455566778766554433
No 43
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=98.59 E-value=1.2e-07 Score=72.73 Aligned_cols=71 Identities=17% Similarity=0.093 Sum_probs=39.7
Q ss_pred EEeCCCCCCCCCCC-Ch-HHHHHHHHHHHHHhC-CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCC
Q 040434 13 VSDLDLTMVDHDDG-EN-LSLLRFNALWEAHYR-QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGES 87 (141)
Q Consensus 13 ~~DlDGTLl~~~~~-~~-~~~~~l~~~l~~~~~-~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~ 87 (141)
++|+||||.+.... .. .....+.++|.++.+ .+..++|+|||+......+.. ++ .-.++++||+++...+.
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~---~~-~i~l~gehG~e~~~~~~ 74 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGG---IP-NIGLAGEHGAEIRRPGG 74 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S----S-S-EEEEGGGTEEEETTE
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcC---CC-CceEEEEeeEEeccCcc
Confidence 68999999987632 11 123444444555543 566899999999999555543 33 24689999999998653
No 44
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.57 E-value=4.5e-07 Score=81.84 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC-C----------hHHHHHHHHHHHHHh-CCCceEEEEcCCCHHHHHHHHHhCCCCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG-E----------NLSLLRFNALWEAHY-RQDSLLVFSTGRSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~-~----------~~~~~~l~~~l~~~~-~~g~~~viaTGR~~~~~~~~~~~~~l~~p 71 (141)
+..++++++++|+||||.+.... . ...-..+..+|.++. ..+..++|+|||+...+.+.+...+
T Consensus 586 y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~---- 661 (934)
T PLN03064 586 YLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFD---- 661 (934)
T ss_pred HHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCC----
Confidence 34567899999999999975311 0 001123333444544 4689999999999999999997643
Q ss_pred CEEEecCCeEEEECCCccccccHHHHh----ccCCCh---HHHHHHHhcCCCCcccccCC
Q 040434 72 DITIMSVGTEIVYGESMVHDDGWENYL----NHKWDR---GIVLEETAKFPELAFQVCLF 124 (141)
Q Consensus 72 ~~~I~~nGa~I~~~~~~~~d~~~~~~i----~~~~~~---~~v~~il~~~~~l~~~~~~~ 124 (141)
-.++++||+++...+ ..|...+ ...|.. ..++...+..||..+..+..
T Consensus 662 L~LaAEHG~~~R~~~-----~~w~~~~~~~~~~~W~~~v~~ile~~~eRtPGS~IE~K~~ 716 (934)
T PLN03064 662 MWLAAENGMFLRHTK-----GEWMTTMPEHLNMDWVDSVKHVFEYFTERTPRSHFETRET 716 (934)
T ss_pred ceEEeeCCeEEecCC-----CcceeccccccchHHHHHHHHHHHHHHhcCCCcEEEEcCc
Confidence 349999999986522 2343111 113321 23445556678876555443
No 45
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.53 E-value=1e-07 Score=74.34 Aligned_cols=64 Identities=9% Similarity=-0.055 Sum_probs=47.4
Q ss_pred eEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH---HHHHHHhCCCC-CCCEEEec
Q 040434 10 LMIVSDLDLTMVDHDD----GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI---YKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~----~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~---~~~~~~~~~l~-~p~~~I~~ 77 (141)
|++++|+||||++.+. ..+.+.+++++ ++++|++++++|||+... +.+.++.+|++ .++-++++
T Consensus 2 k~i~~D~DGtl~~~~~~~~~~~~~a~~al~~----l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts 73 (257)
T TIGR01458 2 KGVLLDISGVLYISDAKSGVAVPGSQEAVKR----LRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTP 73 (257)
T ss_pred CEEEEeCCCeEEeCCCcccCcCCCHHHHHHH----HHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcH
Confidence 6899999999998765 44556666654 457899999999977664 77777887875 34555554
No 46
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.51 E-value=1.1e-07 Score=70.62 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=43.4
Q ss_pred CceEEEEeCCCCCCCC-------CCCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 8 ARLMIVSDLDLTMVDH-------DDGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~-------~~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..|+|++|+||||++. +... ...... ...+..+.++|+.++++|||+...+..+++.+++.
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d-~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~ 88 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRD-GYGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGIT 88 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccc-hHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCc
Confidence 4799999999999986 2111 112210 01123445689999999999999999999998764
No 47
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.50 E-value=3.3e-07 Score=64.42 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=42.7
Q ss_pred eEEEEeCCCCCCCCCC--CCh-------HHHHHHHHHHHHHhCCCceEEEEcCC-CHHHHHHHHHhCC
Q 040434 10 LMIVSDLDLTMVDHDD--GEN-------LSLLRFNALWEAHYRQDSLLVFSTGR-SPTIYKQLRKEKP 67 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~--~~~-------~~~~~l~~~l~~~~~~g~~~viaTGR-~~~~~~~~~~~~~ 67 (141)
|+|++||||||++... ... .......++|+.+.++|++++++|++ +...+..+++..+
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~ 68 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE 68 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence 6899999999998842 011 12345555666677899999999999 7777777777655
No 48
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.44 E-value=5.8e-07 Score=65.99 Aligned_cols=75 Identities=12% Similarity=0.049 Sum_probs=48.7
Q ss_pred CCCCCCceEEEEeCCCCCCCCCCC-----ChHHH----HHHHHHHHHHhCCCceEEEEcCCCH------------HHHHH
Q 040434 3 RLDGSARLMIVSDLDLTMVDHDDG-----ENLSL----LRFNALWEAHYRQDSLLVFSTGRSP------------TIYKQ 61 (141)
Q Consensus 3 ~~~~~~~~li~~DlDGTLl~~~~~-----~~~~~----~~l~~~l~~~~~~g~~~viaTGR~~------------~~~~~ 61 (141)
+...|+.|++++|+||||+..... .+... +...++|++++++|+.++++|..+. ..+..
T Consensus 7 ~~~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~ 86 (166)
T TIGR01664 7 DGPKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEA 86 (166)
T ss_pred CCCCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHH
Confidence 345677899999999999975421 11111 2234445666789999999996554 24677
Q ss_pred HHHhCCCCCCCEEEecC
Q 040434 62 LRKEKPLLTPDITIMSV 78 (141)
Q Consensus 62 ~~~~~~l~~p~~~I~~n 78 (141)
+++.+++.. +.+++++
T Consensus 87 ~l~~~gl~~-~~ii~~~ 102 (166)
T TIGR01664 87 FLEKLKVPI-QVLAATH 102 (166)
T ss_pred HHHHcCCCE-EEEEecC
Confidence 888888753 4455443
No 49
>PLN02645 phosphoglycolate phosphatase
Probab=98.44 E-value=5.5e-07 Score=72.10 Aligned_cols=66 Identities=18% Similarity=0.032 Sum_probs=46.5
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCC---HHHHHHHHHhCCCC-CCCEEEec
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRS---PTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~---~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+.+++++|+||||++.+...+.+.+.++ +++++|++++++|+|+ ...+.+.++.+|+. .++-++++
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~----~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~~~~~I~ts 96 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLD----MLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNVTEEEIFSS 96 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHH----HHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEeeh
Confidence 4689999999999987754344555554 3457899999999999 45555555777765 35555554
No 50
>PRK10444 UMP phosphatase; Provisional
Probab=98.41 E-value=6.1e-07 Score=69.88 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHH---HHhCCCC-CCCEEEec
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQL---RKEKPLL-TPDITIMS 77 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~---~~~~~l~-~p~~~I~~ 77 (141)
.+++++|+||||++.+...+.+.+.++. ++++|.+++++|+|+......+ ++.+|+. .++-++++
T Consensus 1 ~~~v~~DlDGtL~~~~~~~p~a~~~l~~----L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts 69 (248)
T PRK10444 1 IKNVICDIDGVLMHDNVAVPGAAEFLHR----ILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTS 69 (248)
T ss_pred CcEEEEeCCCceEeCCeeCccHHHHHHH----HHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecH
Confidence 3789999999999987544556666544 4578999999999998665554 5556764 34556665
No 51
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=98.34 E-value=2.9e-06 Score=65.86 Aligned_cols=67 Identities=25% Similarity=0.261 Sum_probs=47.3
Q ss_pred CCCCCCceEEEEeCCCCCCCCCC--------CChHHHHH-----------------------HHHHHHHHhCCCceEEEE
Q 040434 3 RLDGSARLMIVSDLDLTMVDHDD--------GENLSLLR-----------------------FNALWEAHYRQDSLLVFS 51 (141)
Q Consensus 3 ~~~~~~~~li~~DlDGTLl~~~~--------~~~~~~~~-----------------------l~~~l~~~~~~g~~~via 51 (141)
.+.+.++..|.+||||||+++.. .+...+.. ..++|..++++|+.++++
T Consensus 57 ~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV 136 (237)
T TIGR01672 57 SLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV 136 (237)
T ss_pred hcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence 35566667999999999998863 11110000 334566677899999999
Q ss_pred cCC----CHHHHHHHHHhCCCC
Q 040434 52 TGR----SPTIYKQLRKEKPLL 69 (141)
Q Consensus 52 TGR----~~~~~~~~~~~~~l~ 69 (141)
|+| ....+..+++.++++
T Consensus 137 Tnr~~~k~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 137 TGRTPGKTDTVSKTLAKNFHIP 158 (237)
T ss_pred eCCCCCcCHHHHHHHHHHhCCc
Confidence 999 556778888888875
No 52
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.31 E-value=7.2e-07 Score=64.53 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=42.6
Q ss_pred ceEEEEeCCCCCCCCC------CCC-hH-HHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHD------DGE-NL-SLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~------~~~-~~-~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.|++++|+||||+++. +.. .. .+..- ..++++.++|+.++++||++...+..+++.+++.
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~-~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~ 68 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG-YGIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT 68 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH-HHHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC
Confidence 4799999999999842 100 00 01100 1245556789999999999999999999998864
No 53
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.24 E-value=3.2e-06 Score=66.55 Aligned_cols=64 Identities=11% Similarity=-0.073 Sum_probs=44.3
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCC---HHHHHHHHHhCCCC-CCCEEEe
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRS---PTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~---~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
.+++++|+||||++.....+.+.+.++ +++++|++|+++|+|+ .......++.+|+. .++-+++
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~----~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~~~~~i~t 69 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLD----RLARAGKAALFVTNNSTKSRAEYALKFARLGFNGLAEQLFS 69 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHH----HHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEec
Confidence 478999999999987654334445444 4457899999999976 44555567777764 2444555
No 54
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.20 E-value=2e-06 Score=60.01 Aligned_cols=60 Identities=18% Similarity=0.067 Sum_probs=41.7
Q ss_pred eEEEEeCCCCCCCCCC---CC--hHHHHHHHHHHHHHhCCCceEEEEcCCC--------HHHHHHHHHhCCCC
Q 040434 10 LMIVSDLDLTMVDHDD---GE--NLSLLRFNALWEAHYRQDSLLVFSTGRS--------PTIYKQLRKEKPLL 69 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~---~~--~~~~~~l~~~l~~~~~~g~~~viaTGR~--------~~~~~~~~~~~~l~ 69 (141)
|++++|+||||.+... .. ........++++.++++|+.++++|+++ ...+..+++.+++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 6899999999996321 00 0111222233445567899999999999 77888899998875
No 55
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.08 E-value=8.2e-06 Score=55.23 Aligned_cols=61 Identities=21% Similarity=0.195 Sum_probs=41.4
Q ss_pred EEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC---CCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 12 IVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG---RSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 12 i~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG---R~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
+++|+||||.....+.+.+.+.++. ++++|.++++.|- |+...+.+.++.+|++ .++-+++
T Consensus 1 ~l~D~dGvl~~g~~~ipga~e~l~~----L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t 65 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIPGAVEALDA----LRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT 65 (101)
T ss_dssp EEEESTTTSEETTEE-TTHHHHHHH----HHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE
T ss_pred CEEeCccEeEeCCCcCcCHHHHHHH----HHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC
Confidence 6899999999877554556666554 3467899999874 5556677778888876 2343443
No 56
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.99 E-value=3.3e-05 Score=56.50 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=36.5
Q ss_pred EEEEeCCCCCCCCCC---------CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHH---HHHHHhC
Q 040434 11 MIVSDLDLTMVDHDD---------GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIY---KQLRKEK 66 (141)
Q Consensus 11 li~~DlDGTLl~~~~---------~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~---~~~~~~~ 66 (141)
+|++|+|||+..++. .+ .+-.-..++..+.+++|.++++.|+|+.... +..++..
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d-~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKD-WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQH 67 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCch-hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHH
Confidence 489999999999961 11 1111222233445679999999999998764 4456655
No 57
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.97 E-value=3.2e-05 Score=59.79 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=45.6
Q ss_pred CCceEEEEeCCCCCCCCCC-----------------------CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH---HH
Q 040434 7 SARLMIVSDLDLTMVDHDD-----------------------GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI---YK 60 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~-----------------------~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~---~~ 60 (141)
..+..+++|+|.|+|.+-. .....+....++++.++++|+.++++|||+... +.
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~ 154 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATL 154 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH
Confidence 3567899999999997540 001122223334455678999999999999766 66
Q ss_pred HHHHhCCCCCCCEEE
Q 040434 61 QLRKEKPLLTPDITI 75 (141)
Q Consensus 61 ~~~~~~~l~~p~~~I 75 (141)
+-++..|++.++-++
T Consensus 155 ~nL~~~G~~~~~~Li 169 (229)
T TIGR01675 155 DNLINAGFTGWKHLI 169 (229)
T ss_pred HHHHHcCCCCcCeee
Confidence 667777776444344
No 58
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.96 E-value=1.8e-05 Score=60.87 Aligned_cols=62 Identities=21% Similarity=0.122 Sum_probs=47.4
Q ss_pred EEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEc---CCCHHHHHHHHHh-CCCC-CCCEEEec
Q 040434 12 IVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFST---GRSPTIYKQLRKE-KPLL-TPDITIMS 77 (141)
Q Consensus 12 i~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaT---GR~~~~~~~~~~~-~~l~-~p~~~I~~ 77 (141)
+++|+||||++.....+.+.+.+.. ++++|..+++.| ||+...+.+.+.+ ++++ .++-+|++
T Consensus 1 ~lfD~DGvL~~~~~~~~~a~e~i~~----l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits 67 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIPGAAEALNR----LRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITS 67 (236)
T ss_pred CEEeCcCccCcCCccCcCHHHHHHH----HHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeH
Confidence 5789999999987554455566554 356899999998 9999999988887 6764 36666666
No 59
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.83 E-value=6.8e-05 Score=57.74 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=45.2
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH--HHHHHHhCCCCC--CCEEEec
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI--YKQLRKEKPLLT--PDITIMS 77 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~--~~~~~~~~~l~~--p~~~I~~ 77 (141)
..+++++|+||||.+.....+...+.+. +++++|++++++|..+... +.+.++.+++.. ++.++++
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~----~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s 76 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLN----KIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISS 76 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHH----HHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEcc
Confidence 4678999999999987644334444443 3457899999976655443 447888888863 4555554
No 60
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.72 E-value=4.6e-05 Score=60.08 Aligned_cols=71 Identities=13% Similarity=-0.040 Sum_probs=48.0
Q ss_pred CceEEEEeCCCCCCCCCCC---------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC--CCCEEEe
Q 040434 8 ARLMIVSDLDLTMVDHDDG---------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL--TPDITIM 76 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~---------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~--~p~~~I~ 76 (141)
..+.+++|+|||+...... .........++++++.++|+.++++|||+.......++.+++. .++.+++
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~~~f~~i~~ 236 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTDIWFDDLIG 236 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcCCchhhhhC
Confidence 3578999999999974321 0111223333445566789999999999999999998887664 2444454
Q ss_pred cC
Q 040434 77 SV 78 (141)
Q Consensus 77 ~n 78 (141)
..
T Consensus 237 ~~ 238 (300)
T PHA02530 237 RP 238 (300)
T ss_pred Cc
Confidence 44
No 61
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.72 E-value=8.5e-05 Score=53.05 Aligned_cols=60 Identities=10% Similarity=-0.089 Sum_probs=39.5
Q ss_pred eEEEEeCCCCCCCCCCCC----h---HHHHHHHHHHHHHhCCCceEEEEcCCCH---------------HHHHHHHHhCC
Q 040434 10 LMIVSDLDLTMVDHDDGE----N---LSLLRFNALWEAHYRQDSLLVFSTGRSP---------------TIYKQLRKEKP 67 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~----~---~~~~~l~~~l~~~~~~g~~~viaTGR~~---------------~~~~~~~~~~~ 67 (141)
+.+++|+||||....... . .......++++.+.++|++++++|..+. ..+...++.++
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLG 80 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCC
Confidence 468999999999876310 0 0011222334556688999999998762 45667778877
Q ss_pred CC
Q 040434 68 LL 69 (141)
Q Consensus 68 l~ 69 (141)
+.
T Consensus 81 l~ 82 (147)
T TIGR01656 81 VA 82 (147)
T ss_pred Cc
Confidence 64
No 62
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.72 E-value=2.8e-05 Score=56.81 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=45.1
Q ss_pred CCceEEEEeCCCCCCCCC---CCChHHHHHHHH----HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD---DGENLSLLRFNA----LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~---~~~~~~~~~l~~----~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.+.||+++|+||||.+-. ...-+.+++|+- -+..+.+.|+.++|.|||.-..+...++.+++.
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~ 75 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIK 75 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCc
Confidence 467999999999999765 111122333331 122334679999999999999999999998864
No 63
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.71 E-value=0.00014 Score=56.42 Aligned_cols=66 Identities=23% Similarity=0.279 Sum_probs=42.4
Q ss_pred CCCCCceEEEEeCCCCCCCCCC----------C-------ChH------------H--HHHHHHHHHHHhCCCceEEEEc
Q 040434 4 LDGSARLMIVSDLDLTMVDHDD----------G-------ENL------------S--LLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~----------~-------~~~------------~--~~~l~~~l~~~~~~g~~~viaT 52 (141)
+.+.++.-|++|||||++++.. + ++. . .+-..++|+.++++|+.++++|
T Consensus 58 ~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVT 137 (237)
T PRK11009 58 LEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFIT 137 (237)
T ss_pred ccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEe
Confidence 3445556899999999997421 0 000 0 0013445566678999999999
Q ss_pred CCC----HHHHHHHHHhCCCC
Q 040434 53 GRS----PTIYKQLRKEKPLL 69 (141)
Q Consensus 53 GR~----~~~~~~~~~~~~l~ 69 (141)
||+ ...+..+++.++++
T Consensus 138 nR~~~k~~~t~~~Llk~~gip 158 (237)
T PRK11009 138 GRTATKTETVSKTLADDFHIP 158 (237)
T ss_pred CCCCcccHHHHHHHHHHcCCC
Confidence 996 33556666668884
No 64
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.71 E-value=9.4e-05 Score=54.60 Aligned_cols=63 Identities=13% Similarity=0.044 Sum_probs=47.3
Q ss_pred CCCCCCCCceEEEEeCCCCCCCCC------CCC-----hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 1 MDRLDGSARLMIVSDLDLTMVDHD------DGE-----NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 1 ~~~~~~~~~~li~~DlDGTLl~~~------~~~-----~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
|++++ ..|+++||+||+|.+.. +.. ......++ .++++|++++++|+++...+...++.+++.
T Consensus 1 ~~~~~--~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~----~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 1 MEQAK--NIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVI----VLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred CCccc--cCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHH----HHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 56633 47999999999999874 110 12333443 345789999999999999999999998875
No 65
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.64 E-value=0.00014 Score=53.95 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=44.1
Q ss_pred ceEEEEeCCCCCCCCCC------------CC-----------hHHHHHHHHHHHHHhCCCceEEEEcCC-CHHHHHHHHH
Q 040434 9 RLMIVSDLDLTMVDHDD------------GE-----------NLSLLRFNALWEAHYRQDSLLVFSTGR-SPTIYKQLRK 64 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~------------~~-----------~~~~~~l~~~l~~~~~~g~~~viaTGR-~~~~~~~~~~ 64 (141)
++|+++|+|+||.++.. +. ..-.+-..++|+.+.++|++++++|++ +...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 58999999999987651 00 011123344556667899999999998 8888888888
Q ss_pred hCCCC
Q 040434 65 EKPLL 69 (141)
Q Consensus 65 ~~~l~ 69 (141)
.+++.
T Consensus 82 ~~~l~ 86 (174)
T TIGR01685 82 TFEIT 86 (174)
T ss_pred hCCcC
Confidence 87763
No 66
>PRK08238 hypothetical protein; Validated
Probab=97.60 E-value=0.00043 Score=58.85 Aligned_cols=45 Identities=20% Similarity=0.120 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeE
Q 040434 35 NALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTE 81 (141)
Q Consensus 35 ~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~ 81 (141)
.+.+++++++|.+++++|+.+...+.++++.+++ ++.++|+++..
T Consensus 78 ~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl--Fd~Vigsd~~~ 122 (479)
T PRK08238 78 LDYLRAERAAGRKLVLATASDERLAQAVAAHLGL--FDGVFASDGTT 122 (479)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC--CCEEEeCCCcc
Confidence 4556677789999999999999999999999876 57788888754
No 67
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.59 E-value=0.0004 Score=50.94 Aligned_cols=46 Identities=20% Similarity=-0.008 Sum_probs=30.2
Q ss_pred eEEEEeCCCCCCCCCCC--ChHH---HHHHHHHHHHHhCCCceEEEEcCCC
Q 040434 10 LMIVSDLDLTMVDHDDG--ENLS---LLRFNALWEAHYRQDSLLVFSTGRS 55 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~--~~~~---~~~l~~~l~~~~~~g~~~viaTGR~ 55 (141)
|++++|.||||+...+. .... ..-..++|++++++|++++++|..+
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 78999999999954321 0011 1123334555677899999999776
No 68
>PRK11587 putative phosphatase; Provisional
Probab=97.57 E-value=0.00045 Score=52.11 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=28.8
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEe
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIM 76 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~ 76 (141)
+|..++++|++++++|+.+...+...++..++..++.+++
T Consensus 91 ~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~~~~~i~~ 130 (218)
T PRK11587 91 LLNHLNKLGIPWAIVTSGSVPVASARHKAAGLPAPEVFVT 130 (218)
T ss_pred HHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCCCccEEEE
Confidence 3445567899999999988877777777777755555554
No 69
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.55 E-value=0.00048 Score=50.63 Aligned_cols=48 Identities=17% Similarity=0.005 Sum_probs=30.9
Q ss_pred CceEEEEeCCCCCCCCCCCC---hH---HHHHHHHHHHHHhCCCceEEEEcCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDGE---NL---SLLRFNALWEAHYRQDSLLVFSTGRS 55 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~---~~---~~~~l~~~l~~~~~~g~~~viaTGR~ 55 (141)
..|++++|.||||..+...- .. ...-..++|++++++|+.++++|..+
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 46899999999986554110 00 11112233455667899999999876
No 70
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.53 E-value=0.00038 Score=54.95 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=46.6
Q ss_pred CCceEEEEeCCCCCCCCCC----------C-ChH------------HHHHHHHHHHHHhCCCceEEEEcCCCHH---HHH
Q 040434 7 SARLMIVSDLDLTMVDHDD----------G-ENL------------SLLRFNALWEAHYRQDSLLVFSTGRSPT---IYK 60 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~----------~-~~~------------~~~~l~~~l~~~~~~g~~~viaTGR~~~---~~~ 60 (141)
.++..|++|||+|++++.. + ++. .+.-..++++.+.++|+.++++|+|+.. .+.
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~ 152 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATL 152 (266)
T ss_pred CCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHH
Confidence 3467999999999986541 0 001 1122233455566789999999999844 455
Q ss_pred HHHHhCCCCC--CCEEEecC
Q 040434 61 QLRKEKPLLT--PDITIMSV 78 (141)
Q Consensus 61 ~~~~~~~l~~--p~~~I~~n 78 (141)
..++.+|++. .+.++...
T Consensus 153 ~~Lkk~Gi~~~~~d~lllr~ 172 (266)
T TIGR01533 153 KNLKRFGFPQADEEHLLLKK 172 (266)
T ss_pred HHHHHcCcCCCCcceEEeCC
Confidence 7788888863 35666653
No 71
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.49 E-value=0.00071 Score=51.62 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=31.0
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|..++++|++++++|..+...+...++.+++. .++.++++
T Consensus 102 L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~iv~s 142 (224)
T PRK14988 102 LEALKASGKRRILLTNAHPHNLAVKLEHTGLDAHLDLLLST 142 (224)
T ss_pred HHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHHHCCEEEEe
Confidence 45566789999999998888888888888774 45666654
No 72
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=97.47 E-value=0.001 Score=50.45 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=32.9
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
.|..+.++|++++++|+++...+..+++.+++. .++.++|
T Consensus 97 ~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g 137 (220)
T COG0546 97 LLAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVG 137 (220)
T ss_pred HHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEc
Confidence 345566789999999999999999999999886 3555665
No 73
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=97.47 E-value=0.00077 Score=51.92 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=31.8
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC--CCEEEec
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT--PDITIMS 77 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~--p~~~I~~ 77 (141)
+|..++++|++++++||.+...+..+++.+++.. ++.++|+
T Consensus 107 ~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~d~ii~~ 149 (253)
T TIGR01422 107 VIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRPDYNVTT 149 (253)
T ss_pred HHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCCceEEcc
Confidence 4455567899999999999999999998877653 2666654
No 74
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.45 E-value=0.00074 Score=53.71 Aligned_cols=76 Identities=24% Similarity=0.203 Sum_probs=46.9
Q ss_pred CCCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCC-ceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEecCCeE
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQD-SLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMSVGTE 81 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g-~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~nGa~ 81 (141)
+-+.++.+|++|||.||+.+.....-.-+++...|.++++.| +.+.+..|..- -+..-++++++. .+|.+||. |..
T Consensus 117 ~~~~~phVIVfDlD~TLItd~~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~e-HV~~sl~~~~L~~~Fd~ii~~-G~~ 194 (297)
T PF05152_consen 117 LVWEPPHVIVFDLDSTLITDEGDVRIRDPAVYDSLRELKEQGCVLVLWSYGNRE-HVRHSLKELKLEGYFDIIICG-GNK 194 (297)
T ss_pred ccCCCCcEEEEECCCcccccCCccccCChHHHHHHHHHHHcCCEEEEecCCCHH-HHHHHHHHhCCccccEEEEeC-Ccc
Confidence 445678899999999999887431111122222334556777 56666777654 456666677775 56777764 443
No 75
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.43 E-value=0.00045 Score=50.60 Aligned_cols=60 Identities=17% Similarity=0.077 Sum_probs=40.9
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCC-HHHHHHHHHhCCC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRS-PTIYKQLRKEKPL 68 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~-~~~~~~~~~~~~l 68 (141)
...+++++|+||||+..+.. .....+.+.|.+++++|+.++++|+.+ ...+..+.+.+++
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~~--~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl 83 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDHN--EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGI 83 (170)
T ss_pred CCCCEEEEecCCccccCCCC--CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCC
Confidence 45689999999999976531 111222333455667899999999998 4556666666554
No 76
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.42 E-value=0.00054 Score=55.05 Aligned_cols=58 Identities=17% Similarity=0.079 Sum_probs=44.9
Q ss_pred CceEEEEeCCCCCCCCC----CCC----hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 8 ARLMIVSDLDLTMVDHD----DGE----NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~----~~~----~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
.+|+|++|+|+||.... +.. ......+.+.|+++.++|+++++||..+...+..+++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 46999999999998753 110 01234566666777889999999999999999999988
No 77
>PLN02954 phosphoserine phosphatase
Probab=97.42 E-value=0.00076 Score=50.77 Aligned_cols=33 Identities=6% Similarity=-0.016 Sum_probs=27.8
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+|+.++++|+.++|+||.....+..+++.+++.
T Consensus 92 ~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 92 LVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred HHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 344456789999999999999999999998875
No 78
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.38 E-value=0.0006 Score=48.80 Aligned_cols=60 Identities=15% Similarity=0.004 Sum_probs=42.8
Q ss_pred ceEEEEeCCCCCCCCCCCC------h-----------------HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 9 RLMIVSDLDLTMVDHDDGE------N-----------------LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~------~-----------------~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
++++++||||||+.....+ + ....-+.++|..+. +++.++++|..+...+..+++.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHH
Confidence 5789999999999863100 0 00122334455554 6799999999999999999998
Q ss_pred CCCC
Q 040434 66 KPLL 69 (141)
Q Consensus 66 ~~l~ 69 (141)
+++.
T Consensus 81 l~~~ 84 (148)
T smart00577 81 LDPK 84 (148)
T ss_pred hCcC
Confidence 8763
No 79
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.34 E-value=0.0014 Score=49.59 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=26.4
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+|+.++++|++++|+||.....+..+++.+ +.
T Consensus 82 ~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~ 113 (219)
T PRK09552 82 FVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IP 113 (219)
T ss_pred HHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CC
Confidence 344456789999999999999999999986 54
No 80
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.31 E-value=0.0019 Score=48.29 Aligned_cols=41 Identities=15% Similarity=-0.103 Sum_probs=31.2
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+|++++++|++++++|+.+...+...++.+++. .++.++++
T Consensus 102 ~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~ 143 (221)
T TIGR02253 102 TLMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVITS 143 (221)
T ss_pred HHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEEe
Confidence 344556789999999999988888889988875 35666653
No 81
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.29 E-value=0.00094 Score=49.29 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=47.6
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
...+=|++|+|.||+..+.+ ...+++++.+++++.+|++++++|-.+..-+......++++
T Consensus 26 ~Gikgvi~DlDNTLv~wd~~--~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDNP--DATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred cCCcEEEEeccCceecccCC--CCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc
Confidence 34678999999999998754 33455666666778899999999999888888888776653
No 82
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=97.28 E-value=0.0011 Score=50.51 Aligned_cols=86 Identities=13% Similarity=0.100 Sum_probs=59.0
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
.+.-|+.+|.||||...+... .+++.+.|+.+ ++-+.+.++-|..++-+.+-+..--+...||..+.||-.-|.++
T Consensus 9 ~~~~l~lfdvdgtLt~~r~~~---~~e~~~~l~~l-r~~v~ig~VggsDl~k~~eqlG~~Vl~~fDY~F~ENGl~~yk~g 84 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTPPRQKV---TPEMLEFLQKL-RKKVTIGFVGGSDLSKQQEQLGDNVLEEFDYVFSENGLVAYKGG 84 (252)
T ss_pred CCceEEEEecCCccccccccC---CHHHHHHHHHH-hhheEEEEeecHHHHHHHHHhchhHHhhhcccccCCCeeEeeCC
Confidence 456799999999999988532 22333333443 45789999999888776665522124568999999999999988
Q ss_pred CccccccHHH
Q 040434 87 SMVHDDGWEN 96 (141)
Q Consensus 87 ~~~~d~~~~~ 96 (141)
+..+......
T Consensus 85 k~~~~Qsi~~ 94 (252)
T KOG3189|consen 85 KLLSKQSIIN 94 (252)
T ss_pred cchhHHHHHH
Confidence 7664433333
No 83
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.28 E-value=0.0016 Score=50.73 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=30.0
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC--CCEEEec
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT--PDITIMS 77 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~--p~~~I~~ 77 (141)
+|..+.++|++++++||.+...+..+++.+++.. ++.++|+
T Consensus 109 lL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~d~i~~~ 151 (267)
T PRK13478 109 VIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRPDHVVTT 151 (267)
T ss_pred HHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCceEEEcC
Confidence 3445567899999999999999988888765532 3555554
No 84
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.00075 Score=53.40 Aligned_cols=67 Identities=16% Similarity=0.065 Sum_probs=45.4
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEc---CCCHHHHHHHHHhC-CCC-CCCEEEec
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFST---GRSPTIYKQLRKEK-PLL-TPDITIMS 77 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaT---GR~~~~~~~~~~~~-~l~-~p~~~I~~ 77 (141)
...+.+++|+||||.+.....+.+.+.++. ++++|.++++.| .|+...+.+.++.+ +.+ .++-++++
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~----L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS 77 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKR----LKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTS 77 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHH----HHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecH
Confidence 456789999999999887554556555543 457899999987 45566566667763 332 35555554
No 85
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.23 E-value=0.0013 Score=56.57 Aligned_cols=69 Identities=9% Similarity=-0.034 Sum_probs=46.3
Q ss_pred CceEEEEeCCCCCCCCCC-----CChHHH----HHHHHHHHHHhCCCceEEEEcCCCH------------HHHHHHHHhC
Q 040434 8 ARLMIVSDLDLTMVDHDD-----GENLSL----LRFNALWEAHYRQDSLLVFSTGRSP------------TIYKQLRKEK 66 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~-----~~~~~~----~~l~~~l~~~~~~g~~~viaTGR~~------------~~~~~~~~~~ 66 (141)
..|++++|+||||..... ..+... ....+.|++++++|+.++|+|-.+- ..+..+++.+
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~l 246 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKL 246 (526)
T ss_pred cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHc
Confidence 469999999999997531 011111 2233445666789999999997655 3477788888
Q ss_pred CCCCCCEEEec
Q 040434 67 PLLTPDITIMS 77 (141)
Q Consensus 67 ~l~~p~~~I~~ 77 (141)
+++ .+.++|.
T Consensus 247 gip-fdviia~ 256 (526)
T TIGR01663 247 GVP-FQVFIAI 256 (526)
T ss_pred CCc-eEEEEeC
Confidence 876 5566654
No 86
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.14 E-value=0.0015 Score=52.55 Aligned_cols=55 Identities=13% Similarity=-0.054 Sum_probs=38.6
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCC----CceEEEEc---CCCHHHHHHHH-HhCCCC
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQ----DSLLVFST---GRSPTIYKQLR-KEKPLL 69 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~----g~~~viaT---GR~~~~~~~~~-~~~~l~ 69 (141)
.+++|+||||+......+.+.++++. ++.+ |+.+++.| |++.....+.+ +.+|+.
T Consensus 2 ~~ifD~DGvL~~g~~~i~ga~eal~~----L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~ 64 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKPIAGASDALRR----LNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVD 64 (321)
T ss_pred EEEEeCcCceECCccccHHHHHHHHH----HhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCC
Confidence 47899999999987544455555554 3455 88888876 66777766655 777764
No 87
>PRK06769 hypothetical protein; Validated
Probab=97.07 E-value=0.0013 Score=48.39 Aligned_cols=68 Identities=15% Similarity=-0.069 Sum_probs=40.9
Q ss_pred CCceEEEEeCCCCCCCCCCCC-h---HHHHHHHHHHHHHhCCCceEEEEcCCCHH--------HHHHHHHhCCCCCCCEE
Q 040434 7 SARLMIVSDLDLTMVDHDDGE-N---LSLLRFNALWEAHYRQDSLLVFSTGRSPT--------IYKQLRKEKPLLTPDIT 74 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~-~---~~~~~l~~~l~~~~~~g~~~viaTGR~~~--------~~~~~~~~~~l~~p~~~ 74 (141)
.+.|.|++|.||||-.++... + .......++|++++++|++++++|+.+.. .+...++.+++. +++
T Consensus 2 ~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~--~~~ 79 (173)
T PRK06769 2 TNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFD--DIY 79 (173)
T ss_pred CCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcC--EEE
Confidence 357899999999997663210 0 01122333445566789999999987631 234445555543 444
Q ss_pred Ee
Q 040434 75 IM 76 (141)
Q Consensus 75 I~ 76 (141)
++
T Consensus 80 ~~ 81 (173)
T PRK06769 80 LC 81 (173)
T ss_pred EC
Confidence 43
No 88
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.02 E-value=0.0023 Score=50.69 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=42.6
Q ss_pred CceEEEEeCCCCCCCCC--------C-C---------------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH---HH
Q 040434 8 ARLMIVSDLDLTMVDHD--------D-G---------------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI---YK 60 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~--------~-~---------------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~---~~ 60 (141)
.+..+++|||+|++.+- + . ....+....++.+.+.++|+.+++.|||+-.. ..
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~ 179 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTE 179 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHH
Confidence 45789999999999422 0 0 00113333344455668999999999998543 33
Q ss_pred HHHHhCCCCCCCEEEe
Q 040434 61 QLRKEKPLLTPDITIM 76 (141)
Q Consensus 61 ~~~~~~~l~~p~~~I~ 76 (141)
+-++..|++.++-+|.
T Consensus 180 ~NL~kaGy~~~~~LiL 195 (275)
T TIGR01680 180 ANLKKAGYHTWEKLIL 195 (275)
T ss_pred HHHHHcCCCCcceeee
Confidence 4455567654444444
No 89
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=96.90 E-value=0.0021 Score=56.10 Aligned_cols=101 Identities=15% Similarity=0.194 Sum_probs=59.6
Q ss_pred CceEEEEeCCCCCCCCCC-----------CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH---HHHHHHhCCCCCCCE
Q 040434 8 ARLMIVSDLDLTMVDHDD-----------GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI---YKQLRKEKPLLTPDI 73 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~-----------~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~---~~~~~~~~~l~~p~~ 73 (141)
..|+|++|+|||+..++. ..+..+..|-. +..++|++++++|.|++.. .+.+++.+. -+.
T Consensus 529 n~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt---~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~---QdG 602 (738)
T KOG2116|consen 529 NDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYT---KIKENGYKILYLSARAIGQADSTRQYLKNVE---QDG 602 (738)
T ss_pred CCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHH---HHHhCCeeEEEEehhhhhhhHHHHHHHHHHh---hcC
Confidence 358999999999998871 11334444432 3357999999999999876 455666532 123
Q ss_pred EEecCCeEEEECCCccccccHHHHhccC---CChHHHHHHHhcCC
Q 040434 74 TIMSVGTEIVYGESMVHDDGWENYLNHK---WDRGIVLEETAKFP 115 (141)
Q Consensus 74 ~I~~nGa~I~~~~~~~~d~~~~~~i~~~---~~~~~v~~il~~~~ 115 (141)
...-+|=+|.....+. ...+++.|.+. +....+.+|-..||
T Consensus 603 ~~LPdGPViLSPd~lf-~Al~REVI~RkPe~FKIAcL~DIk~LF~ 646 (738)
T KOG2116|consen 603 KKLPDGPVILSPDSLF-AALHREVIERKPEVFKIACLTDIKNLFP 646 (738)
T ss_pred ccCCCCCEEeCCCcch-HHHHHHHHHcCchhhhHHHHHHHHHhcC
Confidence 3344566665533222 24456666553 22333444555454
No 90
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.87 E-value=0.0049 Score=44.97 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=40.9
Q ss_pred eEEEEeCCCCCCCCCC-----CChHHH---HHHHHHHHHHhCCCceEEEEcCCC---------------HHHHHHHHHhC
Q 040434 10 LMIVSDLDLTMVDHDD-----GENLSL---LRFNALWEAHYRQDSLLVFSTGRS---------------PTIYKQLRKEK 66 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~-----~~~~~~---~~l~~~l~~~~~~g~~~viaTGR~---------------~~~~~~~~~~~ 66 (141)
+++++|.||||..... .....+ ....+.|+++.++|+.++++|-.+ ...+..+++.+
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~ 81 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQ 81 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHC
Confidence 6899999999998421 011111 123334556677899999999752 44677788888
Q ss_pred CCCCCC
Q 040434 67 PLLTPD 72 (141)
Q Consensus 67 ~l~~p~ 72 (141)
|+. .+
T Consensus 82 gl~-fd 86 (161)
T TIGR01261 82 GII-FD 86 (161)
T ss_pred CCc-ee
Confidence 876 44
No 91
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.78 E-value=0.00064 Score=49.59 Aligned_cols=39 Identities=15% Similarity=0.104 Sum_probs=25.6
Q ss_pred eEEEEeCCCCCCCCCC-------CC------hHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 10 LMIVSDLDLTMVDHDD-------GE------NLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~-------~~------~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
|+.++|+||||+.... +. +...+.| +++.++|..+||+|
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L----~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEAL----RELHKKGYKIVIVT 52 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHH----HHHHHTTEEEEEEE
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHH----HHHHhcCCeEEEEe
Confidence 6899999999997641 11 1233333 45567899999998
No 92
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.74 E-value=0.0033 Score=44.43 Aligned_cols=31 Identities=16% Similarity=0.023 Sum_probs=24.3
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEK 66 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~ 66 (141)
++|+.++++|++++++|+++...+...++..
T Consensus 71 e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~ 101 (154)
T TIGR01549 71 DLLKRLKEAGIKLGIISNGSLRAQKLLLRKH 101 (154)
T ss_pred HHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence 4455566688999999999988888888774
No 93
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.74 E-value=0.0038 Score=46.21 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=27.2
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++|..+.++ ++++++||.....+..+++.+++.
T Consensus 75 e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~ 107 (205)
T PRK13582 75 EFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWP 107 (205)
T ss_pred HHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCc
Confidence 345555566 899999999999999999998875
No 94
>PTZ00445 p36-lilke protein; Provisional
Probab=96.72 E-value=0.0014 Score=50.21 Aligned_cols=53 Identities=21% Similarity=0.158 Sum_probs=37.7
Q ss_pred CCCceEEEEeCCCCCCC-----CCCCC-------hHHHHHHHHHHHHHhCCCceEEEEcCCCHHH
Q 040434 6 GSARLMIVSDLDLTMVD-----HDDGE-------NLSLLRFNALWEAHYRQDSLLVFSTGRSPTI 58 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~-----~~~~~-------~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~ 58 (141)
....|+|++|+|-||+. ...+. ....+.|+.++.++.+.|++++++|=.....
T Consensus 40 ~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 40 ECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 34679999999999998 22111 1134567777777778999999999666543
No 95
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.0042 Score=47.34 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+++.++++|+.++++||-...-+.++.+.+++.
T Consensus 85 lv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 85 LVAALKAAGAKVVIISGGFTFLVEPIAERLGID 117 (212)
T ss_pred HHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc
Confidence 344456799999999999999999999998875
No 96
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.63 E-value=0.0057 Score=45.23 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=35.1
Q ss_pred ceEEEEeCCCCCCCCCCC------------C---------h-HHHHHHHHHHHHHhCCCceEEEEcC-CCHHHHHHHHHh
Q 040434 9 RLMIVSDLDLTMVDHDDG------------E---------N-LSLLRFNALWEAHYRQDSLLVFSTG-RSPTIYKQLRKE 65 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~------------~---------~-~~~~~l~~~l~~~~~~g~~~viaTG-R~~~~~~~~~~~ 65 (141)
+|||++|||+||-+.-.. . . .-.......|+.+..+|+++++||= -.+.-++++++.
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~ 82 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL 82 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh
Confidence 689999999999864310 0 0 0111222334455668999999994 456789999999
Q ss_pred CCCC
Q 040434 66 KPLL 69 (141)
Q Consensus 66 ~~l~ 69 (141)
+++.
T Consensus 83 l~i~ 86 (169)
T PF12689_consen 83 LEID 86 (169)
T ss_dssp TT-C
T ss_pred cCCC
Confidence 8775
No 97
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.54 E-value=0.0063 Score=49.98 Aligned_cols=69 Identities=12% Similarity=0.068 Sum_probs=42.5
Q ss_pred CceEEEEeCCCCCCCCCCC-------C-hHHHHHHHHHHHHHhCCCceEEEEcCC---------------CHHHHHHHHH
Q 040434 8 ARLMIVSDLDLTMVDHDDG-------E-NLSLLRFNALWEAHYRQDSLLVFSTGR---------------SPTIYKQLRK 64 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~-------~-~~~~~~l~~~l~~~~~~g~~~viaTGR---------------~~~~~~~~~~ 64 (141)
+++++++|-||||...... . ..-.+.+.+.|.+++++|++++|+|.. +...+..+++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~ 80 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFE 80 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHH
Confidence 4689999999999986310 0 001112233345566789999999984 2445666788
Q ss_pred hCCCCCCCEEEe
Q 040434 65 EKPLLTPDITIM 76 (141)
Q Consensus 65 ~~~l~~p~~~I~ 76 (141)
..++.....++|
T Consensus 81 ~~gl~fd~i~i~ 92 (354)
T PRK05446 81 SQGIKFDEVLIC 92 (354)
T ss_pred HcCCceeeEEEe
Confidence 777642223444
No 98
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=96.45 E-value=0.00047 Score=53.18 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=38.6
Q ss_pred CceEEEEeCCCCCCCCCCC-----------------------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH---HHH
Q 040434 8 ARLMIVSDLDLTMVDHDDG-----------------------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI---YKQ 61 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~-----------------------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~---~~~ 61 (141)
++..|++|||+|+|.+..- ....+....+++..+.++|+.|+++|||+-.. ..+
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~ 150 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREATEK 150 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHH
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHH
Confidence 4678999999999854200 00011111233445567999999999999774 333
Q ss_pred HHHhCCCCC
Q 040434 62 LRKEKPLLT 70 (141)
Q Consensus 62 ~~~~~~l~~ 70 (141)
-++..|+..
T Consensus 151 nL~~~G~~~ 159 (229)
T PF03767_consen 151 NLKKAGFPG 159 (229)
T ss_dssp HHHHHTTST
T ss_pred HHHHcCCCc
Confidence 455556544
No 99
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.39 E-value=0.018 Score=49.13 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCCCceEEEEeCCCCCCCCC----CC---------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 5 DGSARLMIVSDLDLTMVDHD----DG---------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~----~~---------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
.+..+|.++.|||+||.+.- +. +-..-.+|++.+..+.++|+.+++||=+....++++++.
T Consensus 218 ~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~k 291 (574)
T COG3882 218 SGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRK 291 (574)
T ss_pred hCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhh
Confidence 34567999999999998643 10 013556777777778899999999999999999999976
No 100
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.26 E-value=0.006 Score=44.47 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=19.8
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHH
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALW 38 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l 38 (141)
+.+.|++|+||||+++. +...+++++.+
T Consensus 4 ~~~~viFD~DGTLiDs~---~~~~~a~~~~~ 31 (188)
T PRK10725 4 RYAGLIFDMDGTILDTE---PTHRKAWREVL 31 (188)
T ss_pred cceEEEEcCCCcCccCH---HHHHHHHHHHH
Confidence 46899999999999985 23444555443
No 101
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=96.24 E-value=0.007 Score=43.97 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++++.++++|+.++|+||-+...+.++++.++++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 3444445789999999999999999999988865
No 102
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=96.22 E-value=0.0059 Score=45.67 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.6
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
|+.+.|++|+||||+++.
T Consensus 1 m~~~~viFD~DGTL~ds~ 18 (214)
T PRK13288 1 MKINTVLFDLDGTLINTN 18 (214)
T ss_pred CCccEEEEeCCCcCccCH
Confidence 357899999999999975
No 103
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=96.14 E-value=0.0037 Score=52.55 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=45.5
Q ss_pred CCceEEEEeCCCCCCCCCCC-----------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEE
Q 040434 7 SARLMIVSDLDLTMVDHDDG-----------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITI 75 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~-----------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I 75 (141)
...++|++|||||+..++.. .+..++.+- -...++|.++.+.|.|++..+.-....+ .-|
T Consensus 373 ~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLY---tdI~rNGYkI~YltsR~~Gqa~sTrsyl------rni 443 (580)
T COG5083 373 NNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLY---TDIDRNGYKIKYLTSRSYGQADSTRSYL------RNI 443 (580)
T ss_pred CCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhh---hhhccCceEEEEEecccccchhhhhhHH------Hhh
Confidence 35689999999999998721 011222222 1223689999999999998766555442 145
Q ss_pred ecCCeEEEEC
Q 040434 76 MSVGTEIVYG 85 (141)
Q Consensus 76 ~~nGa~I~~~ 85 (141)
+.||..+.++
T Consensus 444 eQngykLpdg 453 (580)
T COG5083 444 EQNGYKLPDG 453 (580)
T ss_pred hhcCccCCCC
Confidence 6677666554
No 104
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=96.13 E-value=0.0099 Score=45.57 Aligned_cols=17 Identities=29% Similarity=0.264 Sum_probs=15.4
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
+.|.|+||+||||+++.
T Consensus 9 ~~k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 9 RISALTFDLDDTLYDNR 25 (238)
T ss_pred CceeEEEcCcccccCCh
Confidence 56899999999999986
No 105
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.02 E-value=0.008 Score=47.19 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.4
Q ss_pred CCCCCceEEEEeCCCCCCCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~ 24 (141)
|.+..+++|++||||||+++.
T Consensus 8 ~~~~~~k~viFDlDGTL~Ds~ 28 (272)
T PRK13223 8 FPGRLPRLVMFDLDGTLVDSV 28 (272)
T ss_pred CCCccCCEEEEcCCCccccCH
Confidence 566778999999999999985
No 106
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=95.83 E-value=0.01 Score=45.76 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=15.1
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
+.+.|+|||||||+++.
T Consensus 21 ~~k~viFDlDGTLiDs~ 37 (248)
T PLN02770 21 PLEAVLFDVDGTLCDSD 37 (248)
T ss_pred ccCEEEEcCCCccCcCH
Confidence 46899999999999985
No 107
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=95.81 E-value=0.075 Score=40.13 Aligned_cols=32 Identities=6% Similarity=-0.050 Sum_probs=25.3
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++..++++ .+++++||-....+.++++.+++.
T Consensus 76 ll~~lk~~-~~~~IVS~~~~~~~~~il~~lgi~ 107 (203)
T TIGR02137 76 FVDWLRER-FQVVILSDTFYEFSQPLMRQLGFP 107 (203)
T ss_pred HHHHHHhC-CeEEEEeCChHHHHHHHHHHcCCc
Confidence 34444445 499999999999999999998875
No 108
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=95.74 E-value=0.033 Score=41.18 Aligned_cols=61 Identities=11% Similarity=0.020 Sum_probs=37.9
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCCc--eEEEEcCC-------CHHHHHHHHHhCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG--ENLSLLRFNALWEAHYRQDS--LLVFSTGR-------SPTIYKQLRKEKPL 68 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~--~~~~~~~l~~~l~~~~~~g~--~~viaTGR-------~~~~~~~~~~~~~l 68 (141)
+.....|.+++|+|+||...... .++..+.+ .++.+.+. .++|+|=. ....+..+-+.+++
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~----~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgI 107 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWL----NELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGI 107 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHH----HHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCC
Confidence 34566899999999999977632 12333333 34444333 46666654 36667777777664
No 109
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.67 E-value=0.0093 Score=44.14 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=12.8
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
.|++||||||+++.
T Consensus 2 ~viFD~DGTLiDs~ 15 (197)
T TIGR01548 2 ALVLDMDGVMADVS 15 (197)
T ss_pred ceEEecCceEEech
Confidence 58999999999986
No 110
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.65 E-value=0.014 Score=42.22 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.3
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.++|++|+||||+++.
T Consensus 1 ~~~iiFD~DGTL~ds~ 16 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTA 16 (185)
T ss_pred CCeEEEcCCCcccCCh
Confidence 3789999999999986
No 111
>COG4996 Predicted phosphatase [General function prediction only]
Probab=95.55 E-value=0.041 Score=39.47 Aligned_cols=66 Identities=15% Similarity=0.031 Sum_probs=47.5
Q ss_pred eEEEEeCCCCCCCCCCCC----------h-----------HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 10 LMIVSDLDLTMVDHDDGE----------N-----------LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~----------~-----------~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
++|++|.||||.++...+ + .-.....+.++.+++.|..+..+|=+-..-+.+.++.+++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~ 80 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDL 80 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhch
Confidence 479999999999876211 0 0012233444556789999999999999999999999887
Q ss_pred C-CCCEEE
Q 040434 69 L-TPDITI 75 (141)
Q Consensus 69 ~-~p~~~I 75 (141)
. .++|+|
T Consensus 81 ~~yFhy~V 88 (164)
T COG4996 81 LQYFHYIV 88 (164)
T ss_pred hhhEEEEE
Confidence 5 456665
No 112
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.44 E-value=0.13 Score=37.31 Aligned_cols=62 Identities=13% Similarity=0.017 Sum_probs=43.6
Q ss_pred CCceEEEEeCCCCCCCCCCCC--hHH------------------------------HHHHHHHHHHHhCCCceEEEEcCC
Q 040434 7 SARLMIVSDLDLTMVDHDDGE--NLS------------------------------LLRFNALWEAHYRQDSLLVFSTGR 54 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~--~~~------------------------------~~~l~~~l~~~~~~g~~~viaTGR 54 (141)
.+++.+++|||.||+.+.... ... ..-+.+.|.++. +++.+++.|..
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~-~~yel~I~T~~ 82 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEAS-KLYEMHVYTMG 82 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHH-hhcEEEEEeCC
Confidence 467889999999999865210 000 112344455554 55999999999
Q ss_pred CHHHHHHHHHhCCCC
Q 040434 55 SPTIYKQLRKEKPLL 69 (141)
Q Consensus 55 ~~~~~~~~~~~~~l~ 69 (141)
+...+..+++.++..
T Consensus 83 ~~~yA~~vl~~ldp~ 97 (156)
T TIGR02250 83 TRAYAQAIAKLIDPD 97 (156)
T ss_pred cHHHHHHHHHHhCcC
Confidence 999999999987643
No 113
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=95.30 E-value=0.025 Score=42.38 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=15.2
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
+.++|++|+||||+++.
T Consensus 3 ~~~~viFD~DGTL~d~~ 19 (221)
T PRK10563 3 QIEAVFFDCDGTLVDSE 19 (221)
T ss_pred CCCEEEECCCCCCCCCh
Confidence 57899999999999975
No 114
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.30 E-value=0.026 Score=42.43 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+|++++++|+.+...+..+++.+++. .++.++++
T Consensus 107 ~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 141 (222)
T PRK10826 107 QGLKIGLASASPLHMLEAVLTMFDLRDYFDALASA 141 (222)
T ss_pred CCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEEc
Confidence 46777777777777777777776664 24544443
No 115
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.25 E-value=0.023 Score=42.51 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCC---CCCEEEec
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLL---TPDITIMS 77 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~---~p~~~I~~ 77 (141)
+|+.++++||.....+..+++.+++. .++.++|+
T Consensus 102 ~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~~ 138 (220)
T TIGR03351 102 SGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVCP 138 (220)
T ss_pred CCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEcC
Confidence 46677777777777777777766653 24555553
No 116
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.24 E-value=0.0096 Score=42.63 Aligned_cols=54 Identities=22% Similarity=0.159 Sum_probs=35.8
Q ss_pred eEEEEeCCCCCCCCCCCC-------------------hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 10 LMIVSDLDLTMVDHDDGE-------------------NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~-------------------~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
|++++||||||+...... ...+..| |..+ .+...+++.|..+..-+.++++.+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~F---L~~l-~~~~ev~i~T~~~~~ya~~v~~~ld 73 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEF---LEEL-SKHYEVVIWTSASEEYAEPVLDALD 73 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHH---HHHH-HHHCEEEEE-SS-HHHHHHHHHHHT
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHH---HHHH-HHhceEEEEEeehhhhhhHHHHhhh
Confidence 689999999999765221 1234444 3333 3458999999999999999998865
No 117
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.12 E-value=0.047 Score=39.71 Aligned_cols=59 Identities=17% Similarity=0.018 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCCCCCCCCChH---------------------HHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENL---------------------SLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~---------------------~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
++.+++|||+||+........ -..-+.+.|.++.+. ..+++.|--+..-+.++++.++
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ld 79 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILD 79 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHC
Confidence 468999999999966521100 011223344555544 8999999999999999999876
Q ss_pred C
Q 040434 68 L 68 (141)
Q Consensus 68 l 68 (141)
.
T Consensus 80 p 80 (162)
T TIGR02251 80 R 80 (162)
T ss_pred c
Confidence 4
No 118
>PRK11590 hypothetical protein; Provisional
Probab=95.07 E-value=0.016 Score=43.58 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=27.1
Q ss_pred hCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEec
Q 040434 42 YRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMS 77 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~ 77 (141)
.++|+.++++|+.+...+.++++.+++...+.+||.
T Consensus 109 ~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~~i~t 144 (211)
T PRK11590 109 LSSDADVWLITGSPQPLVEQVYFDTPWLPRVNLIAS 144 (211)
T ss_pred HhCCCEEEEEeCCcHHHHHHHHHHccccccCceEEE
Confidence 357899999999999999999988774223446654
No 119
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=95.06 E-value=0.07 Score=47.75 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=67.4
Q ss_pred CCCCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 3 RLDGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 3 ~~~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
....+++++|..|.|||+...+.. ..+..++.+ ....+..+.|++||........+.. ... -.+++.||..+
T Consensus 497 ~y~~s~~rli~ldyd~t~~~~~~~--~~~~~l~~L---~~dp~n~v~i~s~~~r~~l~~~~~~--~~~-lgl~aEhG~f~ 568 (732)
T KOG1050|consen 497 DYKKSKKRLILLDYDLTLIPPRSI--KAISILKDL---CSDPKNIVYIVSGRGRSVLEKWFFG--CKN-LGLAAEHGYFV 568 (732)
T ss_pred hhhhccceEEEecccccccCCCCc--hHHHHHHHH---hcCCCCeEEEEEccCchhhhhhccc--ccc-ceeecccCcee
Confidence 456788999999999999988642 244444433 2356788889999999988776532 222 36899999999
Q ss_pred EECCCccccccHHHHh-ccCCChHHHH----HHHhcCCCCcccc
Q 040434 83 VYGESMVHDDGWENYL-NHKWDRGIVL----EETAKFPELAFQV 121 (141)
Q Consensus 83 ~~~~~~~~d~~~~~~i-~~~~~~~~v~----~il~~~~~l~~~~ 121 (141)
..++. |.... +-.|. +.+. ...++.||..+.+
T Consensus 569 r~~~~------w~~~~~~~~w~-~~v~~i~~~~~ert~GS~ie~ 605 (732)
T KOG1050|consen 569 RIPGK------WETCVLDLDWK-DLVKDIFQYYTERTPGSYIER 605 (732)
T ss_pred ccCCc------eeeecccccHH-HHHHHHHHHHHhcCCCceecc
Confidence 87653 54444 22442 2333 3445557665443
No 120
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.03 E-value=0.028 Score=41.93 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCCC-CCEEEe
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLLT-PDITIM 76 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~~-p~~~I~ 76 (141)
+|+.++++||.....+..+++.+++.. ++.+++
T Consensus 108 ~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~ 141 (226)
T PRK13222 108 AGYPLAVVTNKPTPFVAPLLEALGIADYFSVVIG 141 (226)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHcCCccCccEEEc
Confidence 467788888888887878887777642 344444
No 121
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.02 E-value=0.02 Score=42.35 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=13.5
Q ss_pred eEEEEeCCCCCCCCC
Q 040434 10 LMIVSDLDLTMVDHD 24 (141)
Q Consensus 10 ~li~~DlDGTLl~~~ 24 (141)
|+|+||+||||+++.
T Consensus 1 k~viFDlDGTL~d~~ 15 (203)
T TIGR02252 1 KLITFDAVGTLLALK 15 (203)
T ss_pred CeEEEecCCceeeeC
Confidence 579999999999986
No 122
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=95.01 E-value=0.094 Score=43.50 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=65.7
Q ss_pred CceEEEEeCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhC-----------CCCC---
Q 040434 8 ARLMIVSDLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEK-----------PLLT--- 70 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~-----------~l~~--- 70 (141)
+-+||-||=|+||+.++.. +...+..+.++| ++|+.++|+|.=.+....++..++ +|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL----~~gv~VgIVTAAGY~~a~kY~~RL~GLL~a~~~~~~Lt~~qk 221 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLL----RRGVKVGIVTAAGYPGAEKYEERLHGLLDAFKDSTDLTPEQK 221 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHH----hcCCeEEEEeCCCCCChHHHHHHHHHHHHHHHhccCCCHHHh
Confidence 6789999999999998843 345666666553 679999999988877655543332 2321
Q ss_pred CCEEEecCCe--EEE-ECC------CccccccHHHHhccCCChHHHHHHHhc
Q 040434 71 PDITIMSVGT--EIV-YGE------SMVHDDGWENYLNHKWDRGIVLEETAK 113 (141)
Q Consensus 71 p~~~I~~nGa--~I~-~~~------~~~~d~~~~~~i~~~~~~~~v~~il~~ 113 (141)
--.+|. .|- .++ ++. +.+++..|...-...|+.+.+.++|..
T Consensus 222 ~~l~VM-GGEsNYLfr~~~~~~~~L~~v~~~~W~~~~m~~W~~~dI~~lLD~ 272 (408)
T PF06437_consen 222 SNLYVM-GGESNYLFRYDPESPHGLEFVPREEWLLPEMKTWSEEDITELLDI 272 (408)
T ss_pred cCEEEe-cccceeEEEecCCCCCCeEEccHHhccCccccCcCHHHHHHHHHH
Confidence 123333 332 121 122 235788898777789998887777654
No 123
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.00 E-value=0.017 Score=42.28 Aligned_cols=32 Identities=6% Similarity=-0.114 Sum_probs=26.9
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
|+.++++|+.++++||.....+..+++.+++.
T Consensus 89 l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 89 VRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 44456689999999999999999999998764
No 124
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=94.91 E-value=0.028 Score=42.74 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.9
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
..+.|+||+||||+++.
T Consensus 11 ~~k~viFD~DGTL~Ds~ 27 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSA 27 (229)
T ss_pred cCCEEEEcCcCccccCH
Confidence 45899999999999975
No 125
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=94.88 E-value=0.033 Score=41.44 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.3
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.++|++|+||||++..
T Consensus 1 ~k~viFD~DGTL~d~~ 16 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQ 16 (224)
T ss_pred CCEEEEcCcCcccccc
Confidence 3789999999999986
No 126
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=94.85 E-value=0.026 Score=44.67 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.1
Q ss_pred CCCceEEEEeCCCCCCCCC
Q 040434 6 GSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~ 24 (141)
+.+.+.|+|||||||+++.
T Consensus 37 ~~~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 37 SALPEALLFDCDGVLVETE 55 (286)
T ss_pred ccCCcEEEEeCceeEEccc
Confidence 3456899999999999985
No 127
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=94.79 E-value=0.019 Score=42.97 Aligned_cols=32 Identities=6% Similarity=-0.004 Sum_probs=26.1
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
|++++++|++++++||.....+..+++.+++.
T Consensus 94 l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 94 VKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 34445679999999999988899999888764
No 128
>PHA02597 30.2 hypothetical protein; Provisional
Probab=94.71 E-value=0.016 Score=42.73 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=14.1
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.|.|.+||||||++..
T Consensus 2 ~k~viFDlDGTLiD~~ 17 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ 17 (197)
T ss_pred CcEEEEecCCceEchh
Confidence 5889999999999854
No 129
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=94.70 E-value=0.027 Score=44.44 Aligned_cols=17 Identities=35% Similarity=0.327 Sum_probs=15.1
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
+.+.+++||||||+++.
T Consensus 61 ~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hcCEEEECCcCccccCH
Confidence 46889999999999985
No 130
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=94.49 E-value=0.029 Score=41.62 Aligned_cols=33 Identities=24% Similarity=0.128 Sum_probs=18.9
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
+|++++++||.+...+...++.+++. .++.+++
T Consensus 90 ~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~ 123 (205)
T TIGR01454 90 DGVGTAIATGKSGPRARSLLEALGLLPLFDHVIG 123 (205)
T ss_pred CCCeEEEEeCCchHHHHHHHHHcCChhheeeEEe
Confidence 35666666666666666666666553 2344443
No 131
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=94.33 E-value=0.028 Score=44.02 Aligned_cols=40 Identities=5% Similarity=0.049 Sum_probs=31.2
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|+.++++|++++++|+.+...+..+++.+++. .++.++++
T Consensus 118 L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~ii~~ 158 (260)
T PLN03243 118 VQALKKHEIPIAVASTRPRRYLERAIEAVGMEGFFSVVLAA 158 (260)
T ss_pred HHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHhhCcEEEec
Confidence 34455689999999999999999999988875 46666664
No 132
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=94.33 E-value=0.059 Score=41.06 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=14.4
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.+.+.|||||||+++.
T Consensus 2 ~~avIFD~DGvLvDse 17 (221)
T COG0637 2 IKAVIFDMDGTLVDSE 17 (221)
T ss_pred CcEEEEcCCCCcCcch
Confidence 5789999999999984
No 133
>PRK09449 dUMP phosphatase; Provisional
Probab=94.32 E-value=0.024 Score=42.54 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=27.5
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+.++ +|++++++|..+...+...++.+++. .++.++++
T Consensus 105 ~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~~ 143 (224)
T PRK09449 105 NALR-GKVKMGIITNGFTELQQVRLERTGLRDYFDLLVIS 143 (224)
T ss_pred HHHH-hCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEEE
Confidence 3444 57888999988888888888887764 35666654
No 134
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=94.28 E-value=0.047 Score=39.48 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=12.5
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
.|++|+||||+++.
T Consensus 1 ~iiFD~DGTL~ds~ 14 (185)
T TIGR01990 1 AVIFDLDGVITDTA 14 (185)
T ss_pred CeEEcCCCccccCh
Confidence 47899999999986
No 135
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.02 E-value=0.11 Score=38.88 Aligned_cols=66 Identities=15% Similarity=-0.007 Sum_probs=40.6
Q ss_pred ceEEEEeCCCCCCCCCC-CC---------hHHHHHHHHHHHHHhCCCceEEEEc-----CCCHHH----------HHHHH
Q 040434 9 RLMIVSDLDLTMVDHDD-GE---------NLSLLRFNALWEAHYRQDSLLVFST-----GRSPTI----------YKQLR 63 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~-~~---------~~~~~~l~~~l~~~~~~g~~~viaT-----GR~~~~----------~~~~~ 63 (141)
.+.||+|-||||....+ .. +..++++ .++.+.|..+|++| ||.+.. ++..+
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al----~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l 80 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPAL----LKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL 80 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHH----HHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH
Confidence 68999999999987664 11 1234444 34467899999998 454433 33445
Q ss_pred HhCCCCCCCEEEecC
Q 040434 64 KEKPLLTPDITIMSV 78 (141)
Q Consensus 64 ~~~~l~~p~~~I~~n 78 (141)
+..+....++++|-+
T Consensus 81 ~~~gv~id~i~~Cph 95 (181)
T COG0241 81 ASQGVKIDGILYCPH 95 (181)
T ss_pred HHcCCccceEEECCC
Confidence 555543344555543
No 136
>PLN02940 riboflavin kinase
Probab=93.84 E-value=0.073 Score=43.97 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.2
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.+.|++|+||||+++.
T Consensus 11 ik~VIFDlDGTLvDt~ 26 (382)
T PLN02940 11 VSHVILDLDGTLLNTD 26 (382)
T ss_pred CCEEEECCcCcCCcCH
Confidence 5779999999999975
No 137
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=93.77 E-value=0.048 Score=41.33 Aligned_cols=35 Identities=11% Similarity=0.086 Sum_probs=26.0
Q ss_pred hCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEe
Q 040434 42 YRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIM 76 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~ 76 (141)
+++|+.++++|+.+...+.++.+..++...+.+||
T Consensus 108 ~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~ 142 (210)
T TIGR01545 108 ESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIA 142 (210)
T ss_pred HhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEE
Confidence 34799999999999999999997755422234554
No 138
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=93.77 E-value=0.14 Score=38.76 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCCCCCCCC-------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDG-------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~-------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
.+|+++.||||||+..... -...+++| |+.+. +..-++|=|..+..-+..++..+++
T Consensus 20 ~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eF---L~~~~-~~feIvVwTAa~~~ya~~~l~~l~~ 83 (195)
T TIGR02245 20 GKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEF---LTSAY-EDYDIVIWSATSMKWIEIKMTELGV 83 (195)
T ss_pred CCcEEEEeCCCceEcccccCCCceEEeCCCHHHH---HHHHH-hCCEEEEEecCCHHHHHHHHHHhcc
Confidence 4589999999999976310 01244555 33333 4788888888888899999988764
No 139
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=93.72 E-value=0.051 Score=40.24 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=11.4
Q ss_pred EEEeCCCCCCCCC
Q 040434 12 IVSDLDLTMVDHD 24 (141)
Q Consensus 12 i~~DlDGTLl~~~ 24 (141)
|++|+||||+++.
T Consensus 1 viFD~DGTL~Ds~ 13 (213)
T TIGR01449 1 VLFDLDGTLVDSA 13 (213)
T ss_pred CeecCCCccccCH
Confidence 5899999999875
No 140
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=93.66 E-value=0.045 Score=39.91 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=12.5
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
.|.+||||||+++.
T Consensus 2 ~viFDlDGTL~ds~ 15 (184)
T TIGR01993 2 VWFFDLDNTLYPHS 15 (184)
T ss_pred eEEEeCCCCCCCCc
Confidence 58999999999875
No 141
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=93.56 E-value=0.052 Score=45.67 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.8
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
+.+.+.|||||||+++.
T Consensus 240 m~k~vIFDlDGTLiDs~ 256 (459)
T PRK06698 240 MLQALIFDMDGTLFQTD 256 (459)
T ss_pred hhhheeEccCCceecch
Confidence 35789999999999986
No 142
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=93.48 E-value=0.033 Score=40.00 Aligned_cols=32 Identities=6% Similarity=-0.100 Sum_probs=26.5
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++.++++|+.++++||.....+..+++.+++.
T Consensus 82 l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 82 ISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 34445689999999999999999999988764
No 143
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=93.19 E-value=0.082 Score=38.00 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=12.4
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
.|+||+||||++..
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 37899999999986
No 144
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=92.98 E-value=0.3 Score=35.99 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=32.8
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
++|+.++++|++++++||++...+..+++.+++. .++.+++
T Consensus 113 ~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~ 154 (197)
T TIGR01548 113 GLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIW 154 (197)
T ss_pred HHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEe
Confidence 4445566789999999999999999999999885 3565555
No 145
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=92.91 E-value=0.062 Score=39.54 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
+++++|++++++|+-+...+...++.+++. .++.+++
T Consensus 103 ~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~i~~ 140 (198)
T TIGR01428 103 ALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFDAVLS 140 (198)
T ss_pred HHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhheeEe
Confidence 344567777777777777777777776654 2454444
No 146
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=92.91 E-value=0.11 Score=42.00 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.6
Q ss_pred CCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 43 RQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 43 ~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
+.|++++|+||-....+..+.+++++
T Consensus 195 ~~G~~~aIvSgg~~~~~~~l~~~Lgl 220 (322)
T PRK11133 195 ALGWKVAIASGGFTYFADYLRDKLRL 220 (322)
T ss_pred HcCCEEEEEECCcchhHHHHHHHcCC
Confidence 46788999999887777777877776
No 147
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=92.80 E-value=0.08 Score=38.20 Aligned_cols=36 Identities=0% Similarity=-0.250 Sum_probs=26.7
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCCCCC-CCEEEe
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKPLLT-PDITIM 76 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~l~~-p~~~I~ 76 (141)
+.++|++++++|+.....+..+++.+++.. ++.+++
T Consensus 84 l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~~ 120 (188)
T TIGR01489 84 IKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIYS 120 (188)
T ss_pred HHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEec
Confidence 345789999999999998999888877642 344453
No 148
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=92.07 E-value=0.11 Score=38.72 Aligned_cols=18 Identities=39% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
+..+.|++|+||||++..
T Consensus 2 ~~~k~i~FD~d~TL~d~~ 19 (229)
T COG1011 2 MMIKAILFDLDGTLLDFD 19 (229)
T ss_pred CceeEEEEecCCcccccc
Confidence 567999999999999975
No 149
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=91.88 E-value=0.5 Score=36.34 Aligned_cols=43 Identities=9% Similarity=-0.177 Sum_probs=34.4
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEecC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMSV 78 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~n 78 (141)
++|..++++|++++++|+.+...+...++.+++. .++.++|+.
T Consensus 115 e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~~~ 158 (248)
T PLN02770 115 KLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVIIGS 158 (248)
T ss_pred HHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEecC
Confidence 3445556789999999999999999999999885 367777654
No 150
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=0.76 Score=34.84 Aligned_cols=46 Identities=13% Similarity=-0.061 Sum_probs=33.0
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCCCC-C-CCEEEecCCeEEEECC
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKPLL-T-PDITIMSVGTEIVYGE 86 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~-p~~~I~~nGa~I~~~~ 86 (141)
..+++++|+++||-.-.-+.+++.++.-. . ...=|.+|-..|+.++
T Consensus 85 ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg 132 (220)
T COG4359 85 IKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDG 132 (220)
T ss_pred HHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCC
Confidence 34689999999999999999999886411 1 1233677888887654
No 151
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=91.64 E-value=0.11 Score=38.60 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=13.8
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.+.|+|||||||+++.
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 4689999999999874
No 152
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=91.43 E-value=0.59 Score=34.45 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=31.5
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|..++++|++++++|+.+...+..+++.+++. .++.++|+
T Consensus 94 L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~~ 134 (213)
T TIGR01449 94 LGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIGG 134 (213)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEec
Confidence 34455689999999999999999999998875 35666653
No 153
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=91.27 E-value=0.11 Score=38.31 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=24.3
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++++|+.++++||.....+..+++.+++.
T Consensus 99 l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 99 HKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 35689999999999999899998887764
No 154
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=90.85 E-value=0.63 Score=34.63 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.4
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.++|++|+||||+++.
T Consensus 1 ~k~iiFD~DGTL~ds~ 16 (220)
T TIGR03351 1 ISLVVLDMAGTTVDED 16 (220)
T ss_pred CcEEEEecCCCeeccC
Confidence 3789999999999744
No 155
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=90.84 E-value=0.65 Score=34.52 Aligned_cols=40 Identities=18% Similarity=-0.015 Sum_probs=31.7
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC-CCEEEe
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT-PDITIM 76 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~-p~~~I~ 76 (141)
+|+.++++|+.++++||.....+...++.+++.. ++.+++
T Consensus 90 ~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~~ 130 (214)
T PRK13288 90 TLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVIT 130 (214)
T ss_pred HHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEEe
Confidence 3445567899999999999999999999988753 455554
No 156
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=90.52 E-value=0.69 Score=34.13 Aligned_cols=13 Identities=46% Similarity=0.485 Sum_probs=11.3
Q ss_pred EEEeCCCCCCCCC
Q 040434 12 IVSDLDLTMVDHD 24 (141)
Q Consensus 12 i~~DlDGTLl~~~ 24 (141)
|++||||||+++.
T Consensus 1 iiFDlDGTL~Ds~ 13 (205)
T TIGR01454 1 VVFDLDGVLVDSF 13 (205)
T ss_pred CeecCcCccccCH
Confidence 5799999999974
No 157
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=90.52 E-value=0.54 Score=32.80 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=31.8
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|+++.++|++++++|+.+...+...++.+++. .++.++++
T Consensus 86 L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~~ 126 (176)
T PF13419_consen 86 LERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIISS 126 (176)
T ss_dssp HHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEEG
T ss_pred hhhcccccceeEEeecCCccccccccccccccccccccccc
Confidence 34455689999999999999999999998875 46666654
No 158
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=90.37 E-value=0.16 Score=42.22 Aligned_cols=40 Identities=3% Similarity=-0.046 Sum_probs=31.5
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|..++++|++++++|+++...+..+++.+++. .++.++++
T Consensus 225 L~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~s 265 (381)
T PLN02575 225 VNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVAA 265 (381)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEec
Confidence 34455689999999999999999999988875 46767664
No 159
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=90.22 E-value=0.43 Score=36.07 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=37.7
Q ss_pred CCCCCceEEEEeCCCCCCCCCC----------C-------------------ChH-HHHHHHHHHHHH-hCCCceEEEEc
Q 040434 4 LDGSARLMIVSDLDLTMVDHDD----------G-------------------ENL-SLLRFNALWEAH-YRQDSLLVFST 52 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~----------~-------------------~~~-~~~~l~~~l~~~-~~~g~~~viaT 52 (141)
+.+.++--+.+|||.|+|-+.. + +.. --++..+.|..+ .++|-.+++.|
T Consensus 58 LeG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvT 137 (237)
T COG3700 58 LEGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVT 137 (237)
T ss_pred hcCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEe
Confidence 5667778899999999875430 0 000 012222222333 46999999999
Q ss_pred CCCHHHHHHHH
Q 040434 53 GRSPTIYKQLR 63 (141)
Q Consensus 53 GR~~~~~~~~~ 63 (141)
||+...+..+.
T Consensus 138 GRt~gk~d~vs 148 (237)
T COG3700 138 GRTPGKTDTVS 148 (237)
T ss_pred cCCCCcccccc
Confidence 99988765543
No 160
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=89.37 E-value=0.51 Score=38.57 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=29.6
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
.--+++||||.|+......+...++|+.+....-+-.+++++.|
T Consensus 35 ~fgfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLT 78 (389)
T KOG1618|consen 35 TFGFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLT 78 (389)
T ss_pred ceeEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEe
Confidence 34599999999998776555677777654211111268888887
No 161
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=89.28 E-value=0.4 Score=44.70 Aligned_cols=18 Identities=11% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
.+.+.|+|||||||+++.
T Consensus 73 ~~ikaVIFDlDGTLiDS~ 90 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSE 90 (1057)
T ss_pred CCCCEEEECCCCCeEeCh
Confidence 457899999999999985
No 162
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=89.07 E-value=0.23 Score=36.69 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=11.0
Q ss_pred ceE-EEEeCCCCCCCC
Q 040434 9 RLM-IVSDLDLTMVDH 23 (141)
Q Consensus 9 ~~l-i~~DlDGTLl~~ 23 (141)
+++ |++||||||.+.
T Consensus 1 ~~i~I~iDiDgVLad~ 16 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADF 16 (191)
T ss_dssp --EEEEEESBTTTB-H
T ss_pred CCcEEEEECCCCCccc
Confidence 367 999999999973
No 163
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=88.81 E-value=0.18 Score=36.05 Aligned_cols=39 Identities=26% Similarity=0.159 Sum_probs=23.4
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|+.++++|++++++|+.+... ..+..++++. .++.++++
T Consensus 94 l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~~ 133 (183)
T TIGR01509 94 LEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIFS 133 (183)
T ss_pred HHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEEc
Confidence 344455677788888777766 5555445653 35555543
No 164
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=88.48 E-value=0.19 Score=35.20 Aligned_cols=13 Identities=62% Similarity=0.797 Sum_probs=11.5
Q ss_pred EEEeCCCCCCCCC
Q 040434 12 IVSDLDLTMVDHD 24 (141)
Q Consensus 12 i~~DlDGTLl~~~ 24 (141)
|++|+||||++..
T Consensus 1 iifD~dgtL~d~~ 13 (176)
T PF13419_consen 1 IIFDLDGTLVDTD 13 (176)
T ss_dssp EEEESBTTTEEHH
T ss_pred cEEECCCCcEeCH
Confidence 6899999999865
No 165
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=88.42 E-value=1.3 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.1
Q ss_pred CCCceEEEEeCCCCCCCCC
Q 040434 6 GSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~ 24 (141)
+...+.|+|||||||+++.
T Consensus 21 ~~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 21 GCGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred cCCceEEEEeCCCceeCCc
Confidence 3567899999999999873
No 166
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=88.20 E-value=0.24 Score=37.23 Aligned_cols=30 Identities=7% Similarity=-0.141 Sum_probs=24.0
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
|+.++++|+.++++||.....+.++++.++
T Consensus 79 l~~l~~~g~~~~IvS~~~~~~i~~il~~~~ 108 (214)
T TIGR03333 79 VAFINEHGIPFYVISGGMDFFVYPLLEGIV 108 (214)
T ss_pred HHHHHHCCCeEEEECCCcHHHHHHHHHhhC
Confidence 344456799999999999988999888763
No 167
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=88.15 E-value=1.5 Score=32.71 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCceEEEEeCCCCCCCCC
Q 040434 6 GSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~ 24 (141)
+.+.+.|++|+||||++..
T Consensus 4 ~~~~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 4 PRQILAAIFDMDGLLIDSE 22 (222)
T ss_pred cccCcEEEEcCCCCCCcCH
Confidence 3468999999999999875
No 168
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=88.00 E-value=0.28 Score=35.84 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=20.1
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
|++++++|+.++++||-+...+..+.+.+|+
T Consensus 136 l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 136 LQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp HHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred hhhhhccCcceeeeecccccccccccccccc
Confidence 3344456677777777777777777776665
No 169
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=87.72 E-value=0.36 Score=35.67 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.0
Q ss_pred eEEEEeCCCCCCCCC
Q 040434 10 LMIVSDLDLTMVDHD 24 (141)
Q Consensus 10 ~li~~DlDGTLl~~~ 24 (141)
.+|+|||||||++.+
T Consensus 1 ~~viFDldgvL~d~~ 15 (199)
T PRK09456 1 MLYIFDLGNVIVDID 15 (199)
T ss_pred CEEEEeCCCccccCc
Confidence 379999999999874
No 170
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=87.69 E-value=1.1 Score=35.40 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=39.1
Q ss_pred CCceEEEEeCCCCCCCCCC----------C-ChH---------------HHHHHHHHHHHHhCCCceEEEEcCCCHHH--
Q 040434 7 SARLMIVSDLDLTMVDHDD----------G-ENL---------------SLLRFNALWEAHYRQDSLLVFSTGRSPTI-- 58 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~----------~-~~~---------------~~~~l~~~l~~~~~~g~~~viaTGR~~~~-- 58 (141)
-+.+.|+.|||.|+|++.. + .++ ....|.. -..++|..+.+.|-|....
T Consensus 77 ~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~---Yvn~~Gg~ifyiSNR~~~~~~ 153 (274)
T COG2503 77 GKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLN---YVNSNGGKIFYISNRDQENEK 153 (274)
T ss_pred CCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHH---HHHhcCcEEEEEeccchhccc
Confidence 3456999999999998651 0 011 1122333 3457899999999999877
Q ss_pred --HHHHHHhCCCC
Q 040434 59 --YKQLRKEKPLL 69 (141)
Q Consensus 59 --~~~~~~~~~l~ 69 (141)
..+-+++.|++
T Consensus 154 ~~T~~nLk~~g~~ 166 (274)
T COG2503 154 DGTIENLKSEGLP 166 (274)
T ss_pred chhHHHHHHcCcc
Confidence 44445666665
No 171
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=87.54 E-value=0.83 Score=39.64 Aligned_cols=60 Identities=15% Similarity=0.042 Sum_probs=40.8
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
...+..+.||+++.--.-...-.+...+.+++++++|+.++++||.+...+..+++++++
T Consensus 385 ~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 385 STSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred CEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 467888899998643210001111222223445678999999999999999999999887
No 172
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=87.48 E-value=0.45 Score=36.67 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCHHHHHHHHH-hCCCCCCCEEEecCCeEEEECCCccccccHHHHhc
Q 040434 44 QDSLLVFSTGRSPTIYKQLRK-EKPLLTPDITIMSVGTEIVYGESMVHDDGWENYLN 99 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~-~~~l~~p~~~I~~nGa~I~~~~~~~~d~~~~~~i~ 99 (141)
+.+.+++++|-.+..+..-+. .--+...||+-+.||+..|.+++......+...+.
T Consensus 10 ~~~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~~~y~~~~~~~~~~~~~~lg 66 (220)
T PF03332_consen 10 KKVPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGLVAYKNGELIWSQSIAEFLG 66 (220)
T ss_dssp TTSEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGTEEEETTEEEEE--HHHHHH
T ss_pred hcCeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCCeEEECCCchhhHhHHHHcC
Confidence 579999999999998877663 11123468999999999999876653333444343
No 173
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=87.46 E-value=0.64 Score=40.14 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=41.8
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCC-ceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQD-SLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g-~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.+.++...||+++..-.......+...+.+++++++| ++++++||.+...+..+++++++.
T Consensus 364 ~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~ 425 (556)
T TIGR01525 364 KTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID 425 (556)
T ss_pred cEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC
Confidence 4667788889877542110111122223344556789 999999999999999999998874
No 174
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=87.43 E-value=1.1 Score=41.61 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+++++++|+.++++|||++..+..+.+++|+.
T Consensus 577 I~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~ 608 (997)
T TIGR01106 577 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGII 608 (997)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34556889999999999999999999999874
No 175
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=87.06 E-value=1.3 Score=31.69 Aligned_cols=37 Identities=5% Similarity=-0.026 Sum_probs=27.3
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
..++++|+.++++|++ ..+..+++.+++. .++.++++
T Consensus 98 ~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~~ 135 (185)
T TIGR02009 98 KRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVDA 135 (185)
T ss_pred HHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeeeh
Confidence 3445679999999998 6678888888874 35666653
No 176
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=86.93 E-value=2.4 Score=31.39 Aligned_cols=17 Identities=35% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCceEEEEeCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDH 23 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~ 23 (141)
++.+++++|+||||++.
T Consensus 4 ~~~~~iiFD~DGTL~d~ 20 (226)
T PRK13222 4 MDIRAVAFDLDGTLVDS 20 (226)
T ss_pred CcCcEEEEcCCcccccC
Confidence 56789999999999965
No 177
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=86.78 E-value=1.9 Score=31.49 Aligned_cols=15 Identities=27% Similarity=0.189 Sum_probs=13.2
Q ss_pred eEEEEeCCCCCCCCC
Q 040434 10 LMIVSDLDLTMVDHD 24 (141)
Q Consensus 10 ~li~~DlDGTLl~~~ 24 (141)
|.|+||+||||++..
T Consensus 2 k~viFD~dgTLiD~~ 16 (198)
T TIGR01428 2 KALVFDVYGTLFDVH 16 (198)
T ss_pred cEEEEeCCCcCccHH
Confidence 689999999999854
No 178
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=85.93 E-value=1.8 Score=36.05 Aligned_cols=18 Identities=6% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
...+.|+|||||||+++.
T Consensus 129 ~~~~~VIFDlDGTLIDS~ 146 (381)
T PLN02575 129 CGWLGAIFEWEGVIIEDN 146 (381)
T ss_pred CCCCEEEEcCcCcceeCH
Confidence 356889999999999753
No 179
>PRK11590 hypothetical protein; Provisional
Probab=85.31 E-value=3 Score=31.23 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.1
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
.++|+++||+||||+..+
T Consensus 4 ~~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 4 HERRVVFFDLDGTLHQQD 21 (211)
T ss_pred ccceEEEEecCCCCcccc
Confidence 467899999999999644
No 180
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=84.91 E-value=0.64 Score=36.10 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=19.9
Q ss_pred CCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 43 RQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 43 ~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+.|+.++|.|--.-.-+..+++..++.
T Consensus 87 ~~~~~~~IiSDaNs~fI~~iL~~~gl~ 113 (234)
T PF06888_consen 87 QRGFDLIIISDANSFFIETILEHHGLR 113 (234)
T ss_pred CCCceEEEEeCCcHhHHHHHHHhCCCc
Confidence 357777777777777777777777765
No 181
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=84.81 E-value=2.7 Score=32.90 Aligned_cols=41 Identities=10% Similarity=-0.046 Sum_probs=31.1
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC-CCEEEecC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT-PDITIMSV 78 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~-p~~~I~~n 78 (141)
|+.++++|++++++||.+...+..+++.+++.. .+.+++++
T Consensus 110 L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~~d 151 (272)
T PRK13223 110 LKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIGGD 151 (272)
T ss_pred HHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEecC
Confidence 344556899999999999999999998888753 45566543
No 182
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=84.38 E-value=2.9 Score=33.33 Aligned_cols=39 Identities=3% Similarity=0.234 Sum_probs=30.7
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEE
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITI 75 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I 75 (141)
++..++++|++++++||-....+..+++++++..+...|
T Consensus 129 fl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~I 167 (277)
T TIGR01544 129 FFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKV 167 (277)
T ss_pred HHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceE
Confidence 445566799999999999999999999998875343344
No 183
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=84.13 E-value=0.77 Score=39.46 Aligned_cols=30 Identities=10% Similarity=-0.025 Sum_probs=22.1
Q ss_pred CCCceEEEEcCCCHHHHHHHHHh-CCCCCCCEEEe
Q 040434 43 RQDSLLVFSTGRSPTIYKQLRKE-KPLLTPDITIM 76 (141)
Q Consensus 43 ~~g~~~viaTGR~~~~~~~~~~~-~~l~~p~~~I~ 76 (141)
++|.. +++|+-+...+.++.++ +|+ |.+||
T Consensus 121 ~~g~~-vvVSASp~~~Vepfa~~~LGi---d~VIg 151 (497)
T PLN02177 121 SFGKR-YIITASPRIMVEPFVKTFLGA---DKVLG 151 (497)
T ss_pred hCCCE-EEEECCcHHHHHHHHHHcCCC---CEEEe
Confidence 45654 99999999999999976 564 44553
No 184
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=83.92 E-value=3.3 Score=29.41 Aligned_cols=12 Identities=50% Similarity=0.628 Sum_probs=11.0
Q ss_pred EEEeCCCCCCCC
Q 040434 12 IVSDLDLTMVDH 23 (141)
Q Consensus 12 i~~DlDGTLl~~ 23 (141)
+++||||||++.
T Consensus 2 vlFDlDgtLv~~ 13 (183)
T TIGR01509 2 ILFDLDGVLVDT 13 (183)
T ss_pred eeeccCCceech
Confidence 789999999987
No 185
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=83.88 E-value=2.5 Score=30.62 Aligned_cols=17 Identities=35% Similarity=0.313 Sum_probs=14.5
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
..|++++|+||||++.+
T Consensus 3 ~~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 3 MIKLIIFDLDGTLTDVM 19 (201)
T ss_pred cceEEEEeCCCCCcCCc
Confidence 36899999999999853
No 186
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=83.65 E-value=1.9 Score=31.35 Aligned_cols=14 Identities=21% Similarity=-0.009 Sum_probs=12.1
Q ss_pred eEEEEeCCCCCCCC
Q 040434 10 LMIVSDLDLTMVDH 23 (141)
Q Consensus 10 ~li~~DlDGTLl~~ 23 (141)
+.|+||.||||+..
T Consensus 2 ~~i~fDktGTLt~~ 15 (215)
T PF00702_consen 2 DAICFDKTGTLTQG 15 (215)
T ss_dssp SEEEEECCTTTBES
T ss_pred eEEEEecCCCcccC
Confidence 68999999999765
No 187
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=83.19 E-value=3.4 Score=32.53 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=30.5
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
|+.++++|++++++|+.+...+..+++.+++. .++.+++
T Consensus 151 L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~~F~~vi~ 190 (273)
T PRK13225 151 LAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRSLFSVVQA 190 (273)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhheEEEEe
Confidence 34456789999999999999999999998875 3444443
No 188
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=82.72 E-value=3.2 Score=29.66 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.3
Q ss_pred eEEEEeCCCCCCCCC
Q 040434 10 LMIVSDLDLTMVDHD 24 (141)
Q Consensus 10 ~li~~DlDGTLl~~~ 24 (141)
-+|++|+||||++.+
T Consensus 2 ~~iiFD~dgTL~~~~ 16 (188)
T TIGR01489 2 VVVVSDFDGTITLND 16 (188)
T ss_pred eEEEEeCCCcccCCC
Confidence 579999999999866
No 189
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=82.66 E-value=4.2 Score=30.74 Aligned_cols=40 Identities=5% Similarity=-0.078 Sum_probs=30.7
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|..++++|+.++++|+.+...+..+++.+++. .+++++++
T Consensus 104 L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~~ 144 (229)
T PRK13226 104 LQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLIGG 144 (229)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEEec
Confidence 34456789999999999999888899988875 34555553
No 190
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=82.21 E-value=3.5 Score=29.27 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=12.2
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
|++||+||||+..+
T Consensus 1 l~~fD~DgTl~~~~ 14 (177)
T TIGR01488 1 LAIFDFDGTLTRQD 14 (177)
T ss_pred CEEecCccccccch
Confidence 58999999999765
No 191
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=81.11 E-value=4.7 Score=33.13 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhC-C-------C-CCCCEEEecCC
Q 040434 33 RFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEK-P-------L-LTPDITIMSVG 79 (141)
Q Consensus 33 ~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~-~-------l-~~p~~~I~~nG 79 (141)
.+..+|++++++|++++++|..+...+..+++.+ + + ..+|.+|++..
T Consensus 188 gl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~ 243 (343)
T TIGR02244 188 KLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDAR 243 (343)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCC
Confidence 3444556677899999999999999999999885 5 3 34677887655
No 192
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=80.69 E-value=4.1 Score=34.25 Aligned_cols=40 Identities=5% Similarity=-0.077 Sum_probs=32.4
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|+.++++|++++++|+.+...+..+++.+++. .++.++++
T Consensus 339 L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~~ 379 (459)
T PRK06698 339 FTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFSI 379 (459)
T ss_pred HHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEec
Confidence 34455789999999999999999999998875 35666664
No 193
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=80.50 E-value=1.8 Score=30.98 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=35.7
Q ss_pred CCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCC--CHHHHHHHHHhC
Q 040434 6 GSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGR--SPTIYKQLRKEK 66 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR--~~~~~~~~~~~~ 66 (141)
+...-+-++||||.++.-...-......+.+.+ .+.|.++++||-- ++..++++.+.+
T Consensus 40 G~ttgiAildL~G~~l~l~S~R~~~~~evi~~I---~~~G~PviVAtDV~p~P~~V~Kia~~f 99 (138)
T PF04312_consen 40 GTTTGIAILDLDGELLDLKSSRNMSRSEVIEWI---SEYGKPVIVATDVSPPPETVKKIARSF 99 (138)
T ss_pred CceeEEEEEecCCcEEEEEeecCCCHHHHHHHH---HHcCCEEEEEecCCCCcHHHHHHHHHh
Confidence 344467789999999864311012233343332 3579999999964 455677776653
No 194
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=80.01 E-value=2.8 Score=31.81 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=31.0
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
|..+.++|+.++++|+.+...+...++..++. .++.+|+
T Consensus 95 l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v~ 134 (221)
T COG0637 95 LEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIVT 134 (221)
T ss_pred HHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhcc
Confidence 44456788999999999999999999998875 4555553
No 195
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=79.26 E-value=5.4 Score=30.96 Aligned_cols=58 Identities=17% Similarity=0.053 Sum_probs=36.5
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCC---CHHHHHHHHHhCCC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGR---SPTIYKQLRKEKPL 68 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR---~~~~~~~~~~~~~l 68 (141)
+..+=+..||-|||..++...+.+.++++.+ +.++.++=++|-- +...+.+-+.++|+
T Consensus 5 ~~v~gvLlDlSGtLh~e~~avpga~eAl~rL----r~~~~kVkFvTNttk~Sk~~l~~rL~rlgf 65 (262)
T KOG3040|consen 5 RAVKGVLLDLSGTLHIEDAAVPGAVEALKRL----RDQHVKVKFVTNTTKESKRNLHERLQRLGF 65 (262)
T ss_pred cccceEEEeccceEecccccCCCHHHHHHHH----HhcCceEEEEecCcchhHHHHHHHHHHhCC
Confidence 4456788999999999986555566776543 4456666666544 33334444555443
No 196
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=78.99 E-value=3 Score=35.92 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=38.6
Q ss_pred eEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCc-eEEEEcCCCHHHHHHHHHhCCCC
Q 040434 10 LMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDS-LLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~-~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..+..-.||++...-.....-.+...+.+++++++|+ +++++||.+...+..+++++|+.
T Consensus 343 ~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~ 403 (536)
T TIGR01512 343 TIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID 403 (536)
T ss_pred eEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh
Confidence 3344555676654321001112222333445567899 99999999999999999998874
No 197
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=78.82 E-value=6.7 Score=29.54 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=15.4
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
.+++.++|+||||++.+
T Consensus 4 ~~~la~FDfDgTLt~~d 20 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQD 20 (210)
T ss_pred cCcEEEEcCCCCCccCc
Confidence 57899999999999976
No 198
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=78.61 E-value=2.1 Score=30.73 Aligned_cols=54 Identities=7% Similarity=-0.106 Sum_probs=37.4
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..+-++++|+....+--++..+.+ ++++.. +.+.+|||-...++.++++-.|++
T Consensus 16 ~~~~~v~~tiatgGklf~ev~e~i----qeL~d~-V~i~IASgDr~gsl~~lae~~gi~ 69 (152)
T COG4087 16 SKAGKVLYTIATGGKLFSEVSETI----QELHDM-VDIYIASGDRKGSLVQLAEFVGIP 69 (152)
T ss_pred eecceEEEEEccCcEEcHhhHHHH----HHHHHh-heEEEecCCcchHHHHHHHHcCCc
Confidence 356678888877663222333333 333445 999999999999999998877754
No 199
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=78.40 E-value=1.7 Score=36.30 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=27.4
Q ss_pred ceEEEEeCCCCCCCCCC-------CC------hHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 9 RLMIVSDLDLTMVDHDD-------GE------NLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~-------~~------~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
.|++.+|+||||+.... +. ++..+.+ ..+.+.|+.++|.|
T Consensus 75 ~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Kl----ktl~~~g~~l~ift 127 (422)
T KOG2134|consen 75 SKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKL----KTLYQDGIKLFIFT 127 (422)
T ss_pred cceEEEecCCceeecCCcceeeccCccceeeccccchhh----hhhccCCeEEEEEe
Confidence 58999999999998762 00 1122233 34568999999877
No 200
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=78.19 E-value=6.1 Score=29.08 Aligned_cols=39 Identities=15% Similarity=-0.000 Sum_probs=30.8
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
|++++++ +.++++|+.+...+...++.+++. .++.++++
T Consensus 106 L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~~ 145 (224)
T TIGR02254 106 MENLQQK-FRLYIVTNGVRETQYKRLRKSGLFPFFDDIFVS 145 (224)
T ss_pred HHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHhhcCEEEEc
Confidence 3445566 999999999999999999998874 46777664
No 201
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=77.89 E-value=6.2 Score=28.75 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=12.0
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
++++|+||||+..+
T Consensus 1 ~a~FD~DgTL~~~~ 14 (202)
T TIGR01490 1 LAFFDFDGTLTAKD 14 (202)
T ss_pred CeEEccCCCCCCCc
Confidence 47899999999865
No 202
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=77.57 E-value=5.8 Score=29.34 Aligned_cols=17 Identities=24% Similarity=0.604 Sum_probs=15.1
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
++++++||+||||++..
T Consensus 13 ~~k~iiFD~DGTL~~~~ 29 (219)
T TIGR00338 13 SKKLVVFDMDSTLINAE 29 (219)
T ss_pred cCCEEEEeCcccCCCch
Confidence 56899999999999866
No 203
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=77.36 E-value=1.9 Score=34.15 Aligned_cols=21 Identities=38% Similarity=0.449 Sum_probs=17.0
Q ss_pred CCCCCceEEEEeCCCCCCCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~ 24 (141)
.+..++|.+++|||+||+.+.
T Consensus 84 ~~~~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 84 LATVGRKTLVLDLDETLVHSS 104 (262)
T ss_pred cccCCCceEEEeCCCcccccc
Confidence 345678999999999988665
No 204
>PTZ00056 glutathione peroxidase; Provisional
Probab=77.01 E-value=25 Score=26.21 Aligned_cols=43 Identities=5% Similarity=-0.021 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcC--------CCHHHHHHHHHhCCCCCC
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTG--------RSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTG--------R~~~~~~~~~~~~~l~~p 71 (141)
.....|+++.++...+|+.|+-.+- .+...+..++++.++..|
T Consensus 56 ~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fp 106 (199)
T PTZ00056 56 KHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYN 106 (199)
T ss_pred HHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCce
Confidence 3455666665555567887766652 356778888888776544
No 205
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=76.58 E-value=2 Score=37.03 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=28.2
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHh-CCCCCCCEEEecCCeEEEE
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKE-KPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~-~~l~~p~~~I~~nGa~I~~ 84 (141)
..+.| ..+++|.-+.-.+++++++ +| .|.+| |+++..
T Consensus 105 ~~~~g-~~vVVTAsPrvmVEpFake~LG---~D~Vv---GTEL~v 142 (498)
T PLN02499 105 FSSCD-KRVVVTRMPRVMVERFAKEHLR---ADEVI---GSELVV 142 (498)
T ss_pred HHcCC-eEEEEeCCHHHHHHHHHHHhcC---CceEE---eeeEEE
Confidence 34566 9999999999999999998 55 35555 776654
No 206
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=76.20 E-value=2.3 Score=33.16 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=17.4
Q ss_pred CCCCceEEEEeCCCCCCCCC
Q 040434 5 DGSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~ 24 (141)
.++++.|+++|+|-|+++.+
T Consensus 9 ~~~~ril~~FDFD~TIid~d 28 (256)
T KOG3120|consen 9 SSSPRILLVFDFDRTIIDQD 28 (256)
T ss_pred ccCCcEEEEEecCceeecCC
Confidence 45688999999999999876
No 207
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=75.74 E-value=6.2 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=27.0
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+++++++||.+...+...++.+++. .++.++|+
T Consensus 102 ~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~~ 135 (188)
T PRK10725 102 RRPMAVGTGSESAIAEALLAHLGLRRYFDAVVAA 135 (188)
T ss_pred CCCEEEEcCCchHHHHHHHHhCCcHhHceEEEeh
Confidence 4899999999999999999998875 35666653
No 208
>PLN02940 riboflavin kinase
Probab=75.67 E-value=5.5 Score=32.89 Aligned_cols=42 Identities=2% Similarity=-0.056 Sum_probs=31.5
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHH-hCCCC-CCCEEEecC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRK-EKPLL-TPDITIMSV 78 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~-~~~l~-~p~~~I~~n 78 (141)
+|+.+.++|++++++|+.+...+...++ ..++. .++.++|+.
T Consensus 101 lL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d 144 (382)
T PLN02940 101 LIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD 144 (382)
T ss_pred HHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehh
Confidence 3455567899999999999999888876 56663 467777643
No 209
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=74.94 E-value=3 Score=37.26 Aligned_cols=56 Identities=14% Similarity=-0.040 Sum_probs=38.4
Q ss_pred eEEEEeCCCCCCCCC---CCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 10 LMIVSDLDLTMVDHD---DGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 10 ~li~~DlDGTLl~~~---~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+.+++-.|++++.-- ++. +...+++ +++++.|+++++.||-....+..+.+++|+.
T Consensus 427 r~l~va~~~~~lG~i~l~D~~Rp~a~eaI----~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~ 486 (675)
T TIGR01497 427 TPLVVCEDNRIYGVIYLKDIVKGGIKERF----AQLRKMGIKTIMITGDNRLTAAAIAAEAGVD 486 (675)
T ss_pred eEEEEEECCEEEEEEEecccchhHHHHHH----HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 445555567766432 111 1233333 4456789999999999999999999998874
No 210
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=74.55 E-value=11 Score=29.35 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHH---HHhCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQL---RKEKPLL 69 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~---~~~~~l~ 69 (141)
..+.++|+.++..|.|+....... ++++|+.
T Consensus 91 ~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~ 124 (252)
T PF11019_consen 91 NSLQNKGIPVIALTARGPNMEDWTLRELKSLGID 124 (252)
T ss_pred HHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCC
Confidence 445678999999999998775554 4445543
No 211
>PRK09449 dUMP phosphatase; Provisional
Probab=73.91 E-value=8.7 Score=28.48 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.8
Q ss_pred CceEEEEeCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDH 23 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~ 23 (141)
+.+.|+||+||||++.
T Consensus 2 ~~k~iiFDlDGTLid~ 17 (224)
T PRK09449 2 KYDWILFDADETLFHF 17 (224)
T ss_pred CccEEEEcCCCchhcc
Confidence 5689999999999953
No 212
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=72.13 E-value=13 Score=27.73 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.4
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
.|++|+||||+..+
T Consensus 1 ~~~fDFDgTit~~d 14 (214)
T TIGR03333 1 FIICDFDGTITNND 14 (214)
T ss_pred CEEeccCCCCCcch
Confidence 37999999999877
No 213
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=71.88 E-value=5.5 Score=35.86 Aligned_cols=57 Identities=11% Similarity=-0.039 Sum_probs=38.7
Q ss_pred ceEEEEeCCCCCCCCC---CCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHD---DGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~---~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.+.+++=.||+++.-- .+. +...+.+ ++++++|+++++.||.+...+..+.+++|+.
T Consensus 548 ~~~v~va~~~~~~g~i~l~d~~r~~a~~~i----~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~ 608 (741)
T PRK11033 548 KTVVLVLRNDDVLGLIALQDTLRADARQAI----SELKALGIKGVMLTGDNPRAAAAIAGELGID 608 (741)
T ss_pred CEEEEEEECCEEEEEEEEecCCchhHHHHH----HHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 3555666677766422 111 1233333 3456789999999999999999999998874
No 214
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=71.55 E-value=2.9 Score=31.24 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=11.9
Q ss_pred EEEEeCCCCCCCCC
Q 040434 11 MIVSDLDLTMVDHD 24 (141)
Q Consensus 11 li~~DlDGTLl~~~ 24 (141)
=++.|||||++...
T Consensus 8 ~~ciDIDGtit~~~ 21 (194)
T COG5663 8 RCCIDIDGTITDDP 21 (194)
T ss_pred heeeccCCceecCc
Confidence 48999999998765
No 215
>PRK11440 putative hydrolase; Provisional
Probab=71.45 E-value=15 Score=26.92 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=38.2
Q ss_pred CCCCCCCCceEEEEeCCCCCCCCC-CC--ChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 1 MDRLDGSARLMIVSDLDLTMVDHD-DG--ENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 1 ~~~~~~~~~~li~~DlDGTLl~~~-~~--~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
|-+++.++.-|++.|+=.-++... .. ....+..++++++.++++|++++++.
T Consensus 1 ~~~l~~~~~ALlvID~Qn~f~~~~~~~~~~~~~i~~i~~l~~~ar~~g~pVi~~~ 55 (188)
T PRK11440 1 MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVARAARLAAKFRASGSPVVLVR 55 (188)
T ss_pred CCCCCCCCEEEEEEecccccccCCCCcchHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 667777888899999988877532 11 12466777777777778999999874
No 216
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=71.35 E-value=5.2 Score=28.54 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=36.4
Q ss_pred ceEEEEeCCCCCCCCCCC------ChHHHHHHHHHHHHHhCCCceEEEEcCCCHHH-HHHHHHhCCC
Q 040434 9 RLMIVSDLDLTMVDHDDG------ENLSLLRFNALWEAHYRQDSLLVFSTGRSPTI-YKQLRKEKPL 68 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~------~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~-~~~~~~~~~l 68 (141)
++++.+|+|+||-+.... ...--......|..+.++|+..++|+--.-.. +.+.++-+..
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkv 84 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKV 84 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhcc
Confidence 478999999999865421 11111223333455668899999998554444 5555665443
No 217
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=69.34 E-value=13 Score=27.09 Aligned_cols=40 Identities=18% Similarity=0.111 Sum_probs=27.6
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
+|..++++|++++++|+.+. .+...++.+++. .++.++++
T Consensus 113 ~l~~L~~~g~~~~i~Sn~~~-~~~~~l~~~~l~~~fd~i~~s 153 (203)
T TIGR02252 113 LLKDLRERGLILGVISNFDS-RLRGLLEALGLLEYFDFVVTS 153 (203)
T ss_pred HHHHHHHCCCEEEEEeCCch-hHHHHHHHCCcHHhcceEEee
Confidence 34455678999999998665 457778887774 35655543
No 218
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=68.77 E-value=13 Score=26.52 Aligned_cols=37 Identities=5% Similarity=0.060 Sum_probs=25.2
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEe
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL-TPDITIM 76 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~ 76 (141)
|+.++++|++++++|+... ....++.+++. .++.+++
T Consensus 96 L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~~f~~~~~ 133 (185)
T TIGR01990 96 LDDLKKNNIKIALASASKN--APTVLEKLGLIDYFDAIVD 133 (185)
T ss_pred HHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHhhCcEEEe
Confidence 3445678999999998653 35577877774 3566554
No 219
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=67.59 E-value=10 Score=35.54 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.0
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
++++++|++++++||.+...+..+.+++|+..
T Consensus 666 ~~l~~agi~v~miTGD~~~TA~~iA~~~gii~ 697 (1054)
T TIGR01657 666 KELKRASIRTVMITGDNPLTAVHVARECGIVN 697 (1054)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 34467899999999999999999999999853
No 220
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=65.93 E-value=14 Score=34.04 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=28.6
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
+++++++|++++++||.+...+..+.+++|+..
T Consensus 546 I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~ 578 (917)
T TIGR01116 546 IEKCRTAGIRVIMITGDNKETAEAICRRIGIFS 578 (917)
T ss_pred HHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCC
Confidence 344567899999999999999999999999854
No 221
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=65.91 E-value=13 Score=33.63 Aligned_cols=32 Identities=22% Similarity=0.102 Sum_probs=28.2
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
+++++.|+++++.||.+...+..+.+++|+..
T Consensus 452 ~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~ 483 (755)
T TIGR01647 452 ERARHLGVEVKMVTGDHLAIAKETARRLGLGT 483 (755)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence 44567899999999999999999999999853
No 222
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=64.95 E-value=21 Score=23.45 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEec
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMS 77 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~ 77 (141)
..+.+++++..+..++|+.++..+--+...+.++.+..+++.| +++.
T Consensus 43 ~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~--~~~D 89 (124)
T PF00578_consen 43 AELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFP--VLSD 89 (124)
T ss_dssp HHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSE--EEEE
T ss_pred cchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccc--cccC
Confidence 4566677766566678999999999999999999988775543 4543
No 223
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=64.14 E-value=17 Score=29.40 Aligned_cols=56 Identities=14% Similarity=-0.022 Sum_probs=35.8
Q ss_pred eEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHH---HHHHhCCCC
Q 040434 10 LMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYK---QLRKEKPLL 69 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~---~~~~~~~l~ 69 (141)
..+.+|-||-|..-+...+-+.+.++.+ ++.|-.++++|=++..+-+ +.++.+|+.
T Consensus 23 DtfifDcDGVlW~g~~~ipGs~e~l~~L----~~~gK~i~fvTNNStksr~~y~kK~~~lG~~ 81 (306)
T KOG2882|consen 23 DTFIFDCDGVLWLGEKPIPGSPEALNLL----KSLGKQIIFVTNNSTKSREQYMKKFAKLGFN 81 (306)
T ss_pred CEEEEcCCcceeecCCCCCChHHHHHHH----HHcCCcEEEEeCCCcchHHHHHHHHHHhCcc
Confidence 4689999999998664444455555543 3457777777766555544 445555543
No 224
>KOG2098 consensus Predicted N6-adenine RNA methylase [RNA processing and modification]
Probab=64.12 E-value=4.6 Score=34.54 Aligned_cols=33 Identities=12% Similarity=0.093 Sum_probs=27.3
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCC
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPD 72 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~ 72 (141)
.++..|+.|.++|||.+.-=++-++-+|....+
T Consensus 422 ~LQddGlIFLWVTGRAmELGrecLnlWGY~rVd 454 (591)
T KOG2098|consen 422 VLQDDGLIFLWVTGRAMELGRECLNLWGYERVD 454 (591)
T ss_pred ccccCcEEEEEEcchHHHHHHHHHHhhchhhhh
Confidence 456789999999999999999999888765433
No 225
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=64.01 E-value=6 Score=30.32 Aligned_cols=29 Identities=3% Similarity=0.084 Sum_probs=25.1
Q ss_pred hCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 42 YRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
+++|..+.++||=-...+..+..++|++.
T Consensus 101 ~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 101 HARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 45789999999999999999999988763
No 226
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=63.53 E-value=19 Score=33.93 Aligned_cols=40 Identities=5% Similarity=-0.093 Sum_probs=32.6
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC--CCCEEEec
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL--TPDITIMS 77 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~--~p~~~I~~ 77 (141)
|..++++|++++|+|+.....+...++.+++. .++.+++.
T Consensus 170 L~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~~ 211 (1057)
T PLN02919 170 ITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSA 211 (1057)
T ss_pred HHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEEC
Confidence 44566789999999999999999999998874 36777754
No 227
>PRK10671 copA copper exporting ATPase; Provisional
Probab=61.85 E-value=14 Score=33.71 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=38.2
Q ss_pred ceEEEEeCCCCCCC----CCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVD----HDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~----~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
...++.-.||+++. .+..-+...+. +++++++|++++++||.+...+..+.+.+|+.
T Consensus 630 ~~~v~va~~~~~~g~~~l~d~~r~~a~~~----i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~ 690 (834)
T PRK10671 630 ATPVLLAVDGKAAALLAIRDPLRSDSVAA----LQRLHKAGYRLVMLTGDNPTTANAIAKEAGID 690 (834)
T ss_pred CeEEEEEECCEEEEEEEccCcchhhHHHH----HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 34555566787652 21111122222 34456789999999999999999999998874
No 228
>PLN02811 hydrolase
Probab=61.79 E-value=16 Score=27.28 Aligned_cols=42 Identities=10% Similarity=0.058 Sum_probs=26.1
Q ss_pred HHHHHhCCCceEEEEcCCCHHHHHHHHHh-CCCC-CCCEEEecC
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTIYKQLRKE-KPLL-TPDITIMSV 78 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~~~~~~~~-~~l~-~p~~~I~~n 78 (141)
+|+.++++|++++++||.+...+...+.+ .++. .++.+++..
T Consensus 86 ~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~ 129 (220)
T PLN02811 86 LVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD 129 (220)
T ss_pred HHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECC
Confidence 34555678999999999887655443322 2332 356666643
No 229
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=60.92 E-value=11 Score=29.41 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.6
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
.+.+.+++|||.||++..
T Consensus 13 ~~~~~l~FDiDdtLYp~S 30 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLS 30 (244)
T ss_pred ccceEEEEecccccccCc
Confidence 357899999999999876
No 230
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=60.76 E-value=24 Score=32.44 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++++++.|+++++.||-+...+..+.+++|+.
T Consensus 524 I~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~ 555 (867)
T TIGR01524 524 IAALFKNGINVKVLTGDNEIVTARICQEVGID 555 (867)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999985
No 231
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=59.86 E-value=7.8 Score=35.56 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=28.3
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+++++++|+++++.||-+...+..+.+++|+.
T Consensus 537 i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~ 568 (884)
T TIGR01522 537 VTTLITGGVRIIMITGDSQETAVSIARRLGMP 568 (884)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999985
No 232
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=59.30 E-value=7.7 Score=34.74 Aligned_cols=56 Identities=18% Similarity=0.035 Sum_probs=38.2
Q ss_pred eEEEEeCCCCCCCCC---CCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 10 LMIVSDLDLTMVDHD---DGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 10 ~li~~DlDGTLl~~~---~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+.+++-.|++++.-- ++. +...+++ +++++.|++++..||=+...+..+.+++|+.
T Consensus 426 ~~l~va~~~~~lG~i~l~D~~R~~~~eai----~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId 485 (679)
T PRK01122 426 TPLVVAEDNRVLGVIYLKDIVKPGIKERF----AELRKMGIKTVMITGDNPLTAAAIAAEAGVD 485 (679)
T ss_pred cEEEEEECCeEEEEEEEeccCchhHHHHH----HHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 444444577766422 111 2333443 3456789999999999999999999998874
No 233
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=58.92 E-value=19 Score=33.85 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=28.7
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
+++++++|+++++.||.+...+..+.+++|+..
T Consensus 655 I~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~ 687 (1053)
T TIGR01523 655 VEKCHQAGINVHMLTGDFPETAKAIAQEVGIIP 687 (1053)
T ss_pred HHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 344567899999999999999999999999853
No 234
>TIGR03614 RutB pyrimidine utilization protein B. RL Proc Natl Acad Sci U S A. 2006 Mar 28;103(13):5114-9. Epub 2006 Mar 15.
Probab=58.67 E-value=33 Score=25.97 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=34.6
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC----------ChHHHHHHHHHHHHHhCCCceEEEE
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG----------ENLSLLRFNALWEAHYRQDSLLVFS 51 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~----------~~~~~~~l~~~l~~~~~~g~~~via 51 (141)
+..++.-||+.|+-.-++..++. ....+..++++++.++++|+.+++.
T Consensus 11 ~~~~~tALlvID~Qn~f~~~~~~~~~~~~~~~~~~~~i~~i~~l~~~aR~~g~pVI~~ 68 (226)
T TIGR03614 11 LDPEQTALIVVDMQNAYATPGGYLDLAGFDVSGTKPVIENIKKAVTAARAAGIQVIYF 68 (226)
T ss_pred cCCCCEEEEEEechhhhhCCCcccccccCcchhHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 45567789999999888765321 1246677777777778899988875
No 235
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=57.25 E-value=24 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=28.1
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
++++++|+++++.||-+...+..+.+++|+..
T Consensus 589 ~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~ 620 (941)
T TIGR01517 589 QECQRAGITVRMVTGDNIDTAKAIARNCGILT 620 (941)
T ss_pred HHHHHCCCEEEEECCCChHHHHHHHHHcCCCC
Confidence 34567899999999999999999999999853
No 236
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=57.21 E-value=15 Score=28.63 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=15.2
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
+..|++.+|++|||+...
T Consensus 5 ~~iravtfD~~~tLl~~~ 22 (237)
T KOG3085|consen 5 MRIRAVTFDAGGTLLATL 22 (237)
T ss_pred cceEEEEEeCCCceeecC
Confidence 567899999999999743
No 237
>COG1335 PncA Amidases related to nicotinamidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.78 E-value=40 Score=24.69 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCCCceEEEEeCCCCCCCCCCC---Ch----HHHHHHHHHHHHHhCCCceEEEEcCCCH
Q 040434 5 DGSARLMIVSDLDLTMVDHDDG---EN----LSLLRFNALWEAHYRQDSLLVFSTGRSP 56 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~~---~~----~~~~~l~~~l~~~~~~g~~~viaTGR~~ 56 (141)
..++.-||+.|+--.++..... .. ..+..++.++..+++.|.++++..=-..
T Consensus 2 ~~~~~ALivID~Q~~f~~~~~~~~~~~~~~~~i~~~i~~l~~~ar~~~~~vi~t~~~~~ 60 (205)
T COG1335 2 DPAKTALIVVDMQNDFMPGGGSLAALGVDGRKIIPNIAALVDAARAAGQPVIATQDWHP 60 (205)
T ss_pred CccceEEEEEeeeccccCCCCcccccCCchhhhHHHHHHHHHHHHHcCCeEEEecccCC
Confidence 4567789999999999987632 11 2566677776667778988887654333
No 238
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=55.66 E-value=26 Score=31.46 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=27.4
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+++++.|++++..||-+...+..+.+++|+.
T Consensus 451 ~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 451 RELREMGIETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 3456789999999999999999999999874
No 239
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=55.49 E-value=19 Score=26.41 Aligned_cols=40 Identities=10% Similarity=-0.093 Sum_probs=22.6
Q ss_pred HHHHHhCCCceEEEEcCCCHHH--HHHHHHhCCC-CCCCEEEe
Q 040434 37 LWEAHYRQDSLLVFSTGRSPTI--YKQLRKEKPL-LTPDITIM 76 (141)
Q Consensus 37 ~l~~~~~~g~~~viaTGR~~~~--~~~~~~~~~l-~~p~~~I~ 76 (141)
+|+.++++|++++++|...... ....+...++ ..++.+++
T Consensus 102 ~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~~fd~v~~ 144 (211)
T TIGR02247 102 AIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMALFDAVVE 144 (211)
T ss_pred HHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHhhCCEEEE
Confidence 3445567899999999865432 2222333333 23566664
No 240
>smart00463 SMR Small MutS-related domain.
Probab=55.00 E-value=27 Score=21.81 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHhCCCc--eEEEEcCCCHHHH
Q 040434 28 NLSLLRFNALWEAHYRQDS--LLVFSTGRSPTIY 59 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~--~~viaTGR~~~~~ 59 (141)
.++...+...|.++.+.+. .+.|.|||...+.
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~~~II~G~G~~s~ 45 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQKLVIITGKGKHSL 45 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcccCCCc
Confidence 3577777777777777775 7999999886554
No 241
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=52.99 E-value=21 Score=33.00 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=28.3
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
++++++.|+++++.||=+...+..+.+++|+.
T Consensus 559 I~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~ 590 (902)
T PRK10517 559 LKALKASGVTVKILTGDSELVAAKVCHEVGLD 590 (902)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999984
No 242
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=52.80 E-value=13 Score=24.75 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=14.3
Q ss_pred eEEEEcCCCHHHHHHHHH
Q 040434 47 LLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 47 ~~viaTGR~~~~~~~~~~ 64 (141)
-|+||||++...++.+..
T Consensus 31 y~VI~Tg~S~rh~~aia~ 48 (99)
T TIGR00090 31 YFVIASGTSSRHVKAIAD 48 (99)
T ss_pred EEEEEEeCCHHHHHHHHH
Confidence 689999999888766543
No 243
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=52.78 E-value=57 Score=24.96 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=28.3
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC-CCHHHHHHHHH
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG-RSPTIYKQLRK 64 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG-R~~~~~~~~~~ 64 (141)
..+++.|+|||+-... .+.+.+.++. + .-++++.+.=| |+..++.+++.
T Consensus 44 ~~l~ivDldga~~g~~----~n~~~i~~i~-~--~~~~pv~~gGGIrs~edv~~l~~ 93 (228)
T PRK04128 44 DKIHVVDLDGAFEGKP----KNLDVVKNII-R--ETGLKVQVGGGLRTYESIKDAYE 93 (228)
T ss_pred CEEEEEECcchhcCCc----chHHHHHHHH-h--hCCCCEEEcCCCCCHHHHHHHHH
Confidence 5688899999997653 2333333321 1 23444444444 66777777665
No 244
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=49.90 E-value=48 Score=23.01 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=14.5
Q ss_pred eEEEEcCCCHHHHHHHHHh
Q 040434 47 LLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 47 ~~viaTGR~~~~~~~~~~~ 65 (141)
-||||||++...+..+...
T Consensus 36 yfVIatg~s~rhv~Aiad~ 54 (115)
T COG0799 36 YFVIATGNSSRHVKAIADN 54 (115)
T ss_pred EEEEEEeCchHHHHHHHHH
Confidence 4789999998887766443
No 245
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=49.25 E-value=46 Score=27.21 Aligned_cols=51 Identities=14% Similarity=0.085 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
..+.-|+.++.++.++|+.+. +|.|....+.++++.+|++ ...|+..|...
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~-it~R~~~~~~~LL~~yg~~--y~~iG~~g~~~ 61 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVL-ITARDKDETEELLDLYGID--YIVIGKHGDSL 61 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEE-EEEeccchHHHHHHHcCCC--eEEEcCCCCCH
Confidence 445556666667777888765 5779999999999998874 34577666433
No 246
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=49.17 E-value=28 Score=26.84 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=13.9
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
..-.+.+|+||||++..
T Consensus 9 ~~~~~lfD~dG~lvdte 25 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTE 25 (222)
T ss_pred ceeeEEEecCCcEEecH
Confidence 34578999999999875
No 247
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=48.90 E-value=17 Score=32.79 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=39.8
Q ss_pred EEEEeCCCCCCCC----CCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 11 MIVSDLDLTMVDH----DDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 11 li~~DlDGTLl~~----~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.++.-.||.++.- +..-+.+.+.+. ++++.|+++++.||=+...++.+.+++|+.
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~aI~----~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId 577 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEAIA----ALKALGIKVVMLTGDNRRTAEAIAKELGID 577 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHHHH----HHHHCCCeEEEEcCCCHHHHHHHHHHcChH
Confidence 6888888866542 211123444443 346789999999999999999999998863
No 248
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=48.73 E-value=80 Score=21.11 Aligned_cols=43 Identities=12% Similarity=-0.004 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcC------CCHHHHHHHHHhCCCCCC
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTG------RSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTG------R~~~~~~~~~~~~~l~~p 71 (141)
..+..++++.++..++|+.++.++. ++...+.+.+++.++..|
T Consensus 40 ~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 40 HTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred HHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 4566677665555457887777654 678888888888877654
No 249
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=47.83 E-value=84 Score=24.21 Aligned_cols=17 Identities=18% Similarity=0.323 Sum_probs=14.5
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
..++++||+|-|++-..
T Consensus 15 ~~~aVcFDvDSTvi~eE 31 (227)
T KOG1615|consen 15 SADAVCFDVDSTVIQEE 31 (227)
T ss_pred hcCeEEEecCcchhHHh
Confidence 46899999999999765
No 250
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=47.82 E-value=83 Score=21.09 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCC
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p 71 (141)
..+..+.++.+++.++|+.++..|-.+...+.++.++.++..|
T Consensus 41 ~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~ 83 (140)
T cd03017 41 KEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFP 83 (140)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCce
Confidence 3455666555555567888888887788888888888776543
No 251
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.53 E-value=37 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.9
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHH
Q 040434 18 LTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIY 59 (141)
Q Consensus 18 GTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~ 59 (141)
|=|+++..++..++..+.+.+.++...|+++++..|++-..-
T Consensus 48 GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 48 GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred cccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 445566555567888888888888888999999999876553
No 252
>PRK11538 ribosome-associated protein; Provisional
Probab=47.24 E-value=18 Score=24.53 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.1
Q ss_pred eEEEEcCCCHHHHHHH
Q 040434 47 LLVFSTGRSPTIYKQL 62 (141)
Q Consensus 47 ~~viaTGR~~~~~~~~ 62 (141)
-||||||++...++.+
T Consensus 36 y~VIatg~S~rh~~ai 51 (105)
T PRK11538 36 CMIICTGTSSRHVMSI 51 (105)
T ss_pred EEEEEEeCCHHHHHHH
Confidence 5789999998887754
No 253
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=47.05 E-value=42 Score=27.13 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.1
Q ss_pred CCceEEEEeCCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~ 24 (141)
...++++|||||||+...
T Consensus 108 ~~~~LvvfDmDGTLI~~e 125 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQIE 125 (322)
T ss_pred cCCCEEEEECCCCCcchH
Confidence 457999999999999654
No 254
>PF12611 DUF3766: Protein of unknown function (DUF3766); InterPro: IPR013367 Proteins in this entry are encoded in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function of this protein is unknown.
Probab=46.94 E-value=10 Score=19.00 Aligned_cols=12 Identities=8% Similarity=0.351 Sum_probs=9.4
Q ss_pred eEEEEeCCCCCC
Q 040434 10 LMIVSDLDLTMV 21 (141)
Q Consensus 10 ~li~~DlDGTLl 21 (141)
-=||+.+||+++
T Consensus 13 ~nvFTNIDsaVi 24 (24)
T PF12611_consen 13 ENVFTNIDSAVI 24 (24)
T ss_pred cCceeccccccC
Confidence 348999999864
No 255
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=46.66 E-value=47 Score=28.71 Aligned_cols=55 Identities=9% Similarity=0.019 Sum_probs=30.4
Q ss_pred CceE-EEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHH
Q 040434 8 ARLM-IVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 8 ~~~l-i~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~ 64 (141)
++|| +|+|==-=|+++-. +.-++.+...++..+.+|+-+.++|=++..--..++.
T Consensus 254 kPklVfFfDEAHLLF~da~--kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~ 309 (502)
T PF05872_consen 254 KPKLVFFFDEAHLLFNDAP--KALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLG 309 (502)
T ss_pred CceEEEEEechhhhhcCCC--HHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHH
Confidence 4555 55664433444321 2334444444333457999999999887654333333
No 256
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=46.47 E-value=22 Score=29.21 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.8
Q ss_pred CCCCCceEEEEeCCCCCCCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~ 24 (141)
++-...+.|-+|||.||+...
T Consensus 7 l~l~~i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 7 LNLEKIQVFGFDMDYTLAQYK 27 (343)
T ss_pred cccccCCEEEECccccccccC
Confidence 445578999999999999986
No 257
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=46.01 E-value=73 Score=21.49 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
..+..++++..+..++|+.++.++--.......+.+..+++.| +++.....++
T Consensus 41 ~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~~~p--~~~D~~~~~~ 93 (149)
T cd02970 41 EYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFLPFP--VYADPDRKLY 93 (149)
T ss_pred HHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCCCCe--EEECCchhHH
Confidence 4556666655555567887776666566666667777666544 5555444433
No 258
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=45.91 E-value=75 Score=22.07 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=29.2
Q ss_pred EEEEeCCCCCCCCCCC----ChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 11 MIVSDLDLTMVDHDDG----ENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 11 li~~DlDGTLl~~~~~----~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
|+++|+-..++..... ....++.+.+++..++++|+++++.+
T Consensus 2 LliID~Q~~f~~~~~~~~~~~~~~~~~i~~l~~~ar~~~~~vi~~~ 47 (161)
T cd00431 2 LLVVDMQNDFVPGGGLLLPGADELVPNINRLLAAARAAGIPVIFTR 47 (161)
T ss_pred EEEEECcccCcCCCCCcCccHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 6888998888765421 13466777777666777888888765
No 259
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=44.51 E-value=99 Score=21.00 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCC
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p 71 (141)
..+..++++..+..++|+.++.++--+...++++.++.++..|
T Consensus 46 ~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~ 88 (149)
T cd03018 46 KELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFP 88 (149)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCce
Confidence 4556666655555567888887777777778888887765433
No 260
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=44.22 E-value=47 Score=30.80 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=28.4
Q ss_pred HHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 38 WEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+++++++|+.+++.||=+...+..+.+++|+.
T Consensus 559 I~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~ 590 (903)
T PRK15122 559 IAALRENGVAVKVLTGDNPIVTAKICREVGLE 590 (903)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999984
No 261
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=43.73 E-value=57 Score=23.75 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=20.2
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
++|++++++|++++++|..+...+...+
T Consensus 91 e~L~~l~~~g~~~~i~Sn~~~~~~~~~~ 118 (199)
T PRK09456 91 AIMHKLREQGHRVVVLSNTNRLHTTFWP 118 (199)
T ss_pred HHHHHHHhCCCcEEEEcCCchhhHHHHH
Confidence 3445566789999999998877655444
No 262
>PRK00358 pyrH uridylate kinase; Provisional
Probab=42.96 E-value=69 Score=24.15 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=28.4
Q ss_pred EEEEeCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEEEEcC
Q 040434 11 MIVSDLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 11 li~~DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
.++.=+=|+++.+..+ +.+.++++.+.+.++.+.|.++++++|
T Consensus 2 ~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~g 47 (231)
T PRK00358 2 RVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVG 47 (231)
T ss_pred eEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 3556677888764321 345667777666666677888877777
No 263
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=42.94 E-value=51 Score=25.92 Aligned_cols=31 Identities=3% Similarity=0.020 Sum_probs=25.2
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEK 66 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~ 66 (141)
++|+.+.++|++++++|+.+...+..+++..
T Consensus 151 elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~ 181 (286)
T PLN02779 151 RLMDEALAAGIKVAVCSTSNEKAVSKIVNTL 181 (286)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHHHh
Confidence 3455566789999999999999998888764
No 264
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=42.77 E-value=1.1e+02 Score=23.50 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=12.4
Q ss_pred CCCceEEEEcCCCHHHHHHHHH
Q 040434 43 RQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 43 ~~g~~~viaTGR~~~~~~~~~~ 64 (141)
+.+.++.++-|+.-..+...++
T Consensus 60 ~l~~pv~~V~GNhD~~v~~~l~ 81 (224)
T cd07388 60 EAHLPTFYVPGPQDAPLWEYLR 81 (224)
T ss_pred hcCCceEEEcCCCChHHHHHHH
Confidence 3455666666766655444443
No 265
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=42.77 E-value=82 Score=19.57 Aligned_cols=55 Identities=13% Similarity=-0.002 Sum_probs=34.6
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.+-+++|+.+.=.-+ ...+..+..+++++.++|..+.++.-+ ..++++++..++.
T Consensus 38 ~~~viid~~~v~~iD----s~g~~~L~~l~~~~~~~g~~v~i~~~~--~~~~~~l~~~gl~ 92 (99)
T cd07043 38 PRRLVLDLSGVTFID----SSGLGVLLGAYKRARAAGGRLVLVNVS--PAVRRVLELTGLD 92 (99)
T ss_pred CCEEEEECCCCCEEc----chhHHHHHHHHHHHHHcCCeEEEEcCC--HHHHHHHHHhCcc
Confidence 367778888753322 245566666666666678776665433 4777777776654
No 266
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=42.22 E-value=69 Score=22.85 Aligned_cols=32 Identities=6% Similarity=-0.143 Sum_probs=25.0
Q ss_pred ceEEEEcCCCHHHHHHHHHhCCCC-CCCEEEec
Q 040434 46 SLLVFSTGRSPTIYKQLRKEKPLL-TPDITIMS 77 (141)
Q Consensus 46 ~~~viaTGR~~~~~~~~~~~~~l~-~p~~~I~~ 77 (141)
..++++|..+...+...++.+++. .++.++++
T Consensus 98 ~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~~ 130 (184)
T TIGR01993 98 GRKIIFTNGDRAHARRALNRLGIEDCFDGIFCF 130 (184)
T ss_pred CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEEe
Confidence 468899999999999999998875 34655553
No 267
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=42.21 E-value=93 Score=24.35 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=37.1
Q ss_pred CCceEEEEeCCCCCCCCCC---CChHHHHHHHHHHHHHhCCCceEEEEcCC
Q 040434 7 SARLMIVSDLDLTMVDHDD---GENLSLLRFNALWEAHYRQDSLLVFSTGR 54 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~---~~~~~~~~l~~~l~~~~~~g~~~viaTGR 54 (141)
...+-|.+.|=|-.+..+. .+++.+.++.+.+.++.+.|+.+++++|=
T Consensus 3 ~~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGG 53 (238)
T COG0528 3 PKYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGG 53 (238)
T ss_pred cceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence 3457788999999887753 35677888887777777789999988873
No 268
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=41.69 E-value=1e+02 Score=24.55 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=27.5
Q ss_pred HHHHHHHHhCC-C-ceEEEEcCCCHHHHHHHHHhCCCCCCCEEE
Q 040434 34 FNALWEAHYRQ-D-SLLVFSTGRSPTIYKQLRKEKPLLTPDITI 75 (141)
Q Consensus 34 l~~~l~~~~~~-g-~~~viaTGR~~~~~~~~~~~~~l~~p~~~I 75 (141)
+..+++++.+. + -..+++||+++.....+++.+++. |++-+
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~-~~~~~ 58 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLP-PDYDL 58 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCC-CCeee
Confidence 33333444432 3 356899999999999999888875 65533
No 269
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=41.52 E-value=58 Score=21.39 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=39.7
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
+.+.+++|+-+.=.-+ ...+..|..+.+.++++|+.+.++.- ...++..+...++
T Consensus 47 ~~~~vIlD~s~v~~iD----ssgi~~L~~~~~~~~~~g~~~~l~~~--~~~v~~~l~~~~~ 101 (117)
T PF01740_consen 47 TIKNVILDMSGVSFID----SSGIQALVDIIKELRRRGVQLVLVGL--NPDVRRILERSGL 101 (117)
T ss_dssp SSSEEEEEETTESEES----HHHHHHHHHHHHHHHHTTCEEEEESH--HHHHHHHHHHTTG
T ss_pred cceEEEEEEEeCCcCC----HHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHHHHHcCC
Confidence 3588999998763322 35777777776777789999999855 5567777777665
No 270
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=41.38 E-value=87 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.5
Q ss_pred CCCceEEEE-cCCCHHHHHHHHH
Q 040434 43 RQDSLLVFS-TGRSPTIYKQLRK 64 (141)
Q Consensus 43 ~~g~~~via-TGR~~~~~~~~~~ 64 (141)
+=|.+||+| +||+..++...++
T Consensus 111 kFGfpFii~v~g~s~~~IL~~l~ 133 (166)
T PRK13798 111 KFGFVFLICATGRSADEMLAALQ 133 (166)
T ss_pred hCCCeEEEeeCCCCHHHHHHHHH
Confidence 458888887 9999988877764
No 271
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=41.22 E-value=95 Score=25.88 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCceEEEEeCCCCCCCCCCCChHH-----------------------------HHHHHHHHHHHhCCCceEEEEcCCCH
Q 040434 6 GSARLMIVSDLDLTMVDHDDGENLS-----------------------------LLRFNALWEAHYRQDSLLVFSTGRSP 56 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~~~~~~~-----------------------------~~~l~~~l~~~~~~g~~~viaTGR~~ 56 (141)
.....++.||+||=+..+...++.+ ...+.+. +-+.+.|+.++|++|+..
T Consensus 163 ~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA-~iA~~aG~~~iI~~g~~~ 241 (369)
T COG0263 163 GADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAA-KIATRAGVPVIIASGSKP 241 (369)
T ss_pred CCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHH-HHHHHcCCcEEEecCCCc
Q ss_pred HHHHHHHH
Q 040434 57 TIYKQLRK 64 (141)
Q Consensus 57 ~~~~~~~~ 64 (141)
..+..++.
T Consensus 242 ~~i~~~~~ 249 (369)
T COG0263 242 DVILDALE 249 (369)
T ss_pred chHHHHHh
No 272
>PRK14557 pyrH uridylate kinase; Provisional
Probab=41.03 E-value=39 Score=26.30 Aligned_cols=76 Identities=8% Similarity=0.010 Sum_probs=0.0
Q ss_pred CCCceEEE-EeCCCCCCCCC--CCChHHHHHH--------------HHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 6 GSARLMIV-SDLDLTMVDHD--DGENLSLLRF--------------NALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 6 ~~~~~li~-~DlDGTLl~~~--~~~~~~~~~l--------------~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
+....+++ +|.||-+-.+. .++...++.+ ...+..+.+.|+.+.++.|+....+..+++.
T Consensus 153 ~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g--- 229 (247)
T PRK14557 153 NSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLG--- 229 (247)
T ss_pred CCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcC---
Q ss_pred CCCCEEEecCCeEEEE
Q 040434 69 LTPDITIMSVGTEIVY 84 (141)
Q Consensus 69 ~~p~~~I~~nGa~I~~ 84 (141)
..+..+|....+..|+
T Consensus 230 ~~~GT~i~~~~~~~~~ 245 (247)
T PRK14557 230 EHVGTLINDDASLLVH 245 (247)
T ss_pred CCCcEEEecCcccccc
No 273
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=40.97 E-value=53 Score=25.13 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.2
Q ss_pred CceEEEEeCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVD 22 (141)
Q Consensus 8 ~~~li~~DlDGTLl~ 22 (141)
.+.+++||.||-+-.
T Consensus 163 ~~li~ltdv~Gv~~~ 177 (252)
T cd04241 163 ERVIFLTDVDGVYDK 177 (252)
T ss_pred CEEEEEeCCCeeECC
Confidence 456789999999875
No 274
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=40.76 E-value=72 Score=25.36 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=18.1
Q ss_pred CCceEEEEcCCCHHHHHH---HHHhCCCC
Q 040434 44 QDSLLVFSTGRSPTIYKQ---LRKEKPLL 69 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~---~~~~~~l~ 69 (141)
.-+.+.++|.|+-.+-.+ .++.||+.
T Consensus 185 ~piRtalVTAR~apah~RvI~TLr~Wgv~ 213 (264)
T PF06189_consen 185 SPIRTALVTARSAPAHERVIRTLRSWGVR 213 (264)
T ss_pred CceEEEEEEcCCCchhHHHHHHHHHcCCc
Confidence 347888999998777544 45666664
No 275
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=40.49 E-value=1.1e+02 Score=22.60 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=30.8
Q ss_pred CCceEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 7 SARLMIVSDLDLTMVDHDD----GENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~----~~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
|+.-||++|+=.-++.... .....+..+.+++..++++|+++++.-
T Consensus 1 m~~ALlvID~Qndf~~~g~l~~~~~~~~v~~i~~l~~~ar~~g~pVi~~~ 50 (212)
T PRK11609 1 MKRALLLVDLQNDFCAGGALAVPEGDSTIDVANRLIDWCQSRGIPVIASQ 50 (212)
T ss_pred CCcEEEEEeCCccCCCCCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3457899999877664221 112466777777777778898888764
No 276
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=40.13 E-value=95 Score=22.47 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=16.3
Q ss_pred CCCceEEEE-cCCCHHHHHHHHH
Q 040434 43 RQDSLLVFS-TGRSPTIYKQLRK 64 (141)
Q Consensus 43 ~~g~~~via-TGR~~~~~~~~~~ 64 (141)
+=|.+||+| +||+...+...++
T Consensus 106 kFGfpFvi~v~g~~~~~Il~~l~ 128 (157)
T TIGR03164 106 RFGFPFIMAVKGKTKQSILAAFE 128 (157)
T ss_pred HCCCeeEEeeCCCCHHHHHHHHH
Confidence 358777776 8888888777664
No 277
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=39.57 E-value=1.2e+02 Score=23.41 Aligned_cols=50 Identities=8% Similarity=0.049 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeE
Q 040434 30 SLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTE 81 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~ 81 (141)
....+...+..++++++.|+++|=-++..+..+-++.|...| .+++.|+-
T Consensus 91 ~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~rmGW~~p--w~Ss~gs~ 140 (211)
T PF05988_consen 91 WADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRRMGWTFP--WYSSYGSD 140 (211)
T ss_pred hHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHhcCCCce--EEEcCCCc
Confidence 445554334556788999999999999999999999888755 77877764
No 278
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=39.18 E-value=48 Score=30.78 Aligned_cols=31 Identities=13% Similarity=-0.013 Sum_probs=27.6
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
.++++|+++...||=+...+..+.+++|+..
T Consensus 558 ~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~ 588 (917)
T COG0474 558 ELREAGIKVWMITGDHVETAIAIAKECGIEA 588 (917)
T ss_pred HHHHCCCcEEEECCCCHHHHHHHHHHcCCCC
Confidence 4467899999999999999999999999753
No 279
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=38.91 E-value=40 Score=27.65 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCHH-HHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 44 QDSLLVFSTGRSPT-IYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 44 ~g~~~viaTGR~~~-~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
.++++|+++|+.+. .+++++++ |. .| ++-.||+.-
T Consensus 131 ~n~kvvvv~GwDy~~~~~e~~k~-~~-~p--~~~~n~~~~ 166 (337)
T COG2247 131 KNVKVVVVYGWDYADALMELMKE-GI-VP--VILKNTSIL 166 (337)
T ss_pred cCeEEEEEeccccHHHHHHHHhc-Cc-ce--eEecccccc
Confidence 56899999999999 79999998 64 34 555666644
No 280
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.45 E-value=1.2e+02 Score=23.32 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=35.2
Q ss_pred ceEEEEeC--CCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC--CCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Q 040434 9 RLMIVSDL--DLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG--RSPTIYKQLRKEKPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 9 ~~li~~Dl--DGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG--R~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~ 84 (141)
..+|++|+ |||+-..+ -..++.+.+ ..++++ ++.| |+...+..+++ .|. +.+|. |+.+|.
T Consensus 163 ~~ii~tdi~~dGt~~G~~---~~li~~l~~------~~~ipv-i~~GGi~s~edi~~l~~-~G~---~~viv--G~a~~~ 226 (234)
T PRK13587 163 GGIIYTDIAKDGKMSGPN---FELTGQLVK------ATTIPV-IASGGIRHQQDIQRLAS-LNV---HAAII--GKAAHQ 226 (234)
T ss_pred CEEEEecccCcCCCCccC---HHHHHHHHH------hCCCCE-EEeCCCCCHHHHHHHHH-cCC---CEEEE--hHHHHh
Confidence 47888888 78887654 123333322 234554 4555 88888888875 443 34443 665554
No 281
>PRK14556 pyrH uridylate kinase; Provisional
Probab=38.39 E-value=42 Score=26.37 Aligned_cols=59 Identities=5% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCceEEEEeCCCCCCCCC--CCChHHHHHHH--------------HHHHHHhCCCceEEEEcCCCHHHHHHHHH
Q 040434 6 GSARLMIVSDLDLTMVDHD--DGENLSLLRFN--------------ALWEAHYRQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~--~~~~~~~~~l~--------------~~l~~~~~~g~~~viaTGR~~~~~~~~~~ 64 (141)
+...-+++||.||-+-.+. .+....++.+. ..++.+.+.|+++.+..|+....+.+++.
T Consensus 164 ~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~ 238 (249)
T PRK14556 164 GADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVL 238 (249)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHc
No 282
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=37.63 E-value=33 Score=22.73 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=13.1
Q ss_pred ceEEEEcCCCHHHHHHH
Q 040434 46 SLLVFSTGRSPTIYKQL 62 (141)
Q Consensus 46 ~~~viaTGR~~~~~~~~ 62 (141)
--++||||++...++.+
T Consensus 30 dy~II~T~~S~rh~~ai 46 (100)
T PF02410_consen 30 DYFIIATGRSERHVRAI 46 (100)
T ss_dssp SEEEEEEESSHHHHHHH
T ss_pred CEEEEEEcCCHHHHHHH
Confidence 46899999998776554
No 283
>PRK12353 putative amino acid kinase; Reviewed
Probab=37.46 E-value=62 Score=26.10 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=31.2
Q ss_pred eEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHhCCCceEEEEcCCCH
Q 040434 10 LMIVSDLDLTMVDHDD----GENLSLLRFNALWEAHYRQDSLLVFSTGRSP 56 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~----~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~ 56 (141)
+.|+.=|.|-.+.+.. ...+.+..+.+.+.++.+.|+.+++++|-..
T Consensus 3 ~~iVIklGG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~ 53 (314)
T PRK12353 3 KKIVVALGGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGP 53 (314)
T ss_pred cEEEEEECHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 4566777777665542 1234566666666677788999999988744
No 284
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=37.37 E-value=1.1e+02 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.0
Q ss_pred CCCceEEEE-cCCCHHHHHHHHH
Q 040434 43 RQDSLLVFS-TGRSPTIYKQLRK 64 (141)
Q Consensus 43 ~~g~~~via-TGR~~~~~~~~~~ 64 (141)
+=|.+||+| +||+...+...++
T Consensus 106 kFGfpFii~v~g~s~~~IL~~l~ 128 (158)
T TIGR03180 106 KFGRIFLIRAAGRSAEEMLDALQ 128 (158)
T ss_pred HCCCeEEEeeCCCCHHHHHHHHH
Confidence 358888877 8999888877764
No 285
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=37.30 E-value=21 Score=31.00 Aligned_cols=33 Identities=9% Similarity=0.167 Sum_probs=21.8
Q ss_pred eEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Q 040434 47 LLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 47 ~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~ 84 (141)
+-+++|.-+.-.+..+++++ + ..|.+| |+++..
T Consensus 147 ~~~vv~~~PrvMve~Flkey-l-~~d~V~---g~El~~ 179 (525)
T PLN02588 147 KRVGVSDLPQVMIDVFLRDY-L-EIEVVV---GRDMKM 179 (525)
T ss_pred cEEEEecCCHHHHHHHHHHh-c-CcceEe---eeeEEE
Confidence 45566668888888888885 3 345454 777643
No 286
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=35.99 E-value=1.2e+02 Score=19.51 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=34.0
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
+.+-+..||-|+=.-+ ...+..+...+++++++|..+.++.- ...++++++..++.
T Consensus 38 ~~~~vilDls~v~~iD----ssgi~~L~~~~~~~~~~g~~l~l~~~--~~~v~~~l~~~gl~ 93 (106)
T TIGR02886 38 PIKHLILNLKNVTFMD----SSGLGVILGRYKKIKNEGGEVIVCNV--SPAVKRLFELSGLF 93 (106)
T ss_pred CCCEEEEECCCCcEec----chHHHHHHHHHHHHHHcCCEEEEEeC--CHHHHHHHHHhCCc
Confidence 3567888887763332 14555566555566677888877653 34566666665553
No 287
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=35.57 E-value=45 Score=25.71 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=31.5
Q ss_pred HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCC-C-CCCCEEEecCCeEEEEC
Q 040434 36 ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKP-L-LTPDITIMSVGTEIVYG 85 (141)
Q Consensus 36 ~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~-l-~~p~~~I~~nGa~I~~~ 85 (141)
++++.+..+|+++++||+++-..+.-.++..+ + ..+...|+..|-++..+
T Consensus 99 kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d~~~v~~g 150 (222)
T KOG2914|consen 99 KLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGDDPEVKNG 150 (222)
T ss_pred HHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecCCccccCC
Confidence 33455678999999999997777766665544 1 12333455445565544
No 288
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=35.49 E-value=56 Score=25.40 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=25.4
Q ss_pred EEEecCCeEEEECCCccccccHHHHhccCCChHHHHHHHhcCCCC
Q 040434 73 ITIMSVGTEIVYGESMVHDDGWENYLNHKWDRGIVLEETAKFPEL 117 (141)
Q Consensus 73 ~~I~~nGa~I~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l 117 (141)
.+|+.||..|++-. +....++..+++.+..+||+
T Consensus 167 pviTDnGN~IlDv~-----------~~~i~dp~~le~~l~~IpGV 200 (227)
T COG0120 167 PVITDNGNYILDVH-----------FGRIEDPEELEKELNAIPGV 200 (227)
T ss_pred CEEeeCCCEEEEec-----------CCCcCCHHHHHHHHhCCCCE
Confidence 48999999998732 22344678899999999885
No 289
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.42 E-value=79 Score=20.51 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=18.9
Q ss_pred hCCCceEEEEcCCCHHHHHHHHHh
Q 040434 42 YRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
.+.|++++++-+++..++...+.+
T Consensus 72 kk~~ip~~~~~~~~~~~l~~~l~~ 95 (97)
T PF10087_consen 72 KKYGIPIIYSRSRGVSSLERALER 95 (97)
T ss_pred HHcCCcEEEECCCCHHHHHHHHHh
Confidence 457888888888888888877765
No 290
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=35.14 E-value=1.3e+02 Score=19.51 Aligned_cols=56 Identities=14% Similarity=-0.087 Sum_probs=34.9
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..+.+++|+-|.-.-+ ...+..+..+.++++.+|..+.++-=+ ..+++.++..++.
T Consensus 40 ~~~~vvlDls~v~~iD----ssg~~~l~~~~~~~~~~g~~l~l~g~~--~~v~~~l~~~gl~ 95 (109)
T cd07041 40 RARGVIIDLTGVPVID----SAVARHLLRLARALRLLGARTILTGIR--PEVAQTLVELGID 95 (109)
T ss_pred CCCEEEEECCCCchhc----HHHHHHHHHHHHHHHHcCCeEEEEeCC--HHHHHHHHHhCCC
Confidence 4567888887764433 245666666655666678777776433 4566666665653
No 291
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=34.90 E-value=1e+02 Score=25.42 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=32.0
Q ss_pred CceEEEEeCCCCCCCCCC--CChHHHHHHHHHHHHHhCCCceEEEEcC
Q 040434 8 ARLMIVSDLDLTMVDHDD--GENLSLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~--~~~~~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
..+.++.=+=|+.+.+.. .+.+.+..+.+.+.++++.|..+++++|
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~s 54 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSS 54 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcc
Confidence 346788999998886542 1235566676666666778888888777
No 292
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.68 E-value=51 Score=29.35 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=35.1
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCC--HHHHHHHHHhC
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRS--PTIYKQLRKEK 66 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~--~~~~~~~~~~~ 66 (141)
.+.-+-+.||||-++.-...-.-+...+..++ .+.|.++++||-=+ +..+.++.+.+
T Consensus 253 iTtgiAvldldGevl~~~S~r~~~~~eVve~I---~~lG~PvvVAtDVtp~P~~V~KiAasf 311 (652)
T COG2433 253 ITTGIAVLDLDGEVLDLESRRGIDRSEVVEFI---SELGKPVVVATDVTPAPETVKKIAASF 311 (652)
T ss_pred ceeeEEEEecCCcEEeeeccccCCHHHHHHHH---HHcCCceEEEccCCCChHHHHHHHHHc
Confidence 34467889999999865421011233343333 24599999999754 44566776654
No 293
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=34.59 E-value=1.4e+02 Score=19.88 Aligned_cols=38 Identities=18% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhC
Q 040434 29 LSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEK 66 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~ 66 (141)
..+..++++..++.++|+.|+.++.-+...+.+..+..
T Consensus 40 ~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 40 TELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 34666776666665678888888888888888888776
No 294
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=34.46 E-value=65 Score=23.36 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=26.4
Q ss_pred HHHHhC-CCceEEEEcCCCHHHH-HHHHHhCCCC
Q 040434 38 WEAHYR-QDSLLVFSTGRSPTIY-KQLRKEKPLL 69 (141)
Q Consensus 38 l~~~~~-~g~~~viaTGR~~~~~-~~~~~~~~l~ 69 (141)
+.++.. .++.|+.+|.+..... .++++.+|+.
T Consensus 38 v~~l~~~~~~lflWvTn~~~~~~~~~l~~~WGf~ 71 (176)
T PF05063_consen 38 VPQLAAPGALLFLWVTNSQLPEAKLELFPAWGFE 71 (176)
T ss_pred HHHhCCCCcEEEEEeccchhhHHHHHHHHhCCCE
Confidence 344444 5599999999999999 9999999875
No 295
>PRK06437 hypothetical protein; Provisional
Probab=34.40 E-value=63 Score=19.78 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=20.7
Q ss_pred HHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 57 TIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 57 ~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
..+.+++++++++...++|.-||..+.
T Consensus 21 ~tv~dLL~~Lgi~~~~vaV~vNg~iv~ 47 (67)
T PRK06437 21 LTVNDIIKDLGLDEEEYVVIVNGSPVL 47 (67)
T ss_pred CcHHHHHHHcCCCCccEEEEECCEECC
Confidence 357778888888756678888998885
No 296
>PF02557 VanY: D-alanyl-D-alanine carboxypeptidase; InterPro: IPR003709 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These proteins are metallopeptidases belonging to MEROPS peptidase family M15 (clan MD), subfamily M15B (vanY D-Ala-D-Ala carboxypeptidase) and M15C (Ply, L-alanyl-D-glutamate peptidase). Acquired VanA- and VanB-type glycopeptide resistance in enterococci is due to synthesis of modified peptidoglycan precursors terminating in D-lactate. As opposed to VanA-type strains which are resistant to both vancomycin and teicoplanin, VanB-type strains remain teicoplanin susceptible []. The vanY gene was necessary for synthesis of the vancomycin-inducible D,D-carboxypeptidase 3.4.16.4 from EC activity previously proposed to be responsible for glycopeptide resistance. However, this activity was not required for peptidoglycan synthesis in the presence of glycopeptides []. Bacteriophage lysins (Ply) or endolysins are phage-encoded cell wall lytic enzymes which are synthesised late during virus multiplication and mediate the release of progeny virions. Bacteriophages of the pathogen Listeria monocytogenes encode endolysin enzymes which specifically hydrolyse the cross-linking peptide bridges in Listeria peptidoglycan. Ply118 is a 30.8kDa L-alanoyl-D-glutamate peptidase and Ply511 (36.5 kDa) acts as N-acetylmuramoyl-L-alanine amidase (IPR002502 from INTERPRO). ; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4F78_A 2VO9_C.
Probab=34.17 E-value=51 Score=22.72 Aligned_cols=36 Identities=28% Similarity=0.165 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEcC-CCHHHHHHHH
Q 040434 28 NLSLLRFNALWEAHYRQDSLLVFSTG-RSPTIYKQLR 63 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~~~viaTG-R~~~~~~~~~ 63 (141)
+....++.++++.+.+.|+.+.+.|| |++..-..+.
T Consensus 6 ~~~~~~~~~l~~aa~~~G~~l~i~SgyRs~~~Q~~ly 42 (132)
T PF02557_consen 6 PEAAKALNALVAAAKAEGINLKITSGYRSYEEQQQLY 42 (132)
T ss_dssp HHHHHHHHHHHHHCCTTTTSEEEEE----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeecCCHHHHHHHH
Confidence 35677788776666678999999998 7777766666
No 297
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=34.04 E-value=1e+02 Score=24.12 Aligned_cols=45 Identities=9% Similarity=0.142 Sum_probs=31.3
Q ss_pred ceEEEEeCCCCCCCCCCC--ChHHHHHHHHHHHHHhCCCceEEEE-cC
Q 040434 9 RLMIVSDLDLTMVDHDDG--ENLSLLRFNALWEAHYRQDSLLVFS-TG 53 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~--~~~~~~~l~~~l~~~~~~g~~~via-TG 53 (141)
.++++.=+=||.+.++.. +...+.++.+.+.++..+|..++++ ||
T Consensus 9 ~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sg 56 (266)
T PRK12314 9 AKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSG 56 (266)
T ss_pred CCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeC
Confidence 467889999999864321 2456677776666667788887774 76
No 298
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=33.86 E-value=1.6e+02 Score=23.56 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCc--eEEEEcCCCHHHHHHHHHhCCCCCCCEEEe
Q 040434 30 SLLRFNALWEAHYRQDS--LLVFSTGRSPTIYKQLRKEKPLLTPDITIM 76 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~--~~viaTGR~~~~~~~~~~~~~l~~p~~~I~ 76 (141)
...++.+++..+.++|. .++|.-|.+-..+.+++.+.....|+.+|.
T Consensus 176 ~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~ 224 (310)
T PF12048_consen 176 LFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVL 224 (310)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEE
Confidence 44556655555555544 699999999999999999877666765553
No 299
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=33.86 E-value=2.1e+02 Score=21.57 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=33.6
Q ss_pred CceEEEEeCCCCCCCCCCC--C--------hHHHHHH------HHHHHHHhCCCceEEEEcCCCHHHHHHHHH
Q 040434 8 ARLMIVSDLDLTMVDHDDG--E--------NLSLLRF------NALWEAHYRQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~--~--------~~~~~~l------~~~l~~~~~~g~~~viaTGR~~~~~~~~~~ 64 (141)
...++.+|.||-+..+... . ......+ ...++.+.+.|+.+.|+.|+....+..+++
T Consensus 148 ~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~ 220 (229)
T cd04239 148 DVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALK 220 (229)
T ss_pred CEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHc
Confidence 4467799999999654211 0 0111111 011222345688889999988888777775
No 300
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=33.42 E-value=1.2e+02 Score=23.28 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=12.7
Q ss_pred CceEEEEeCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDH 23 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~ 23 (141)
...+++||.||-+..+
T Consensus 158 d~liilTDVdGvy~~d 173 (251)
T cd04242 158 DLLILLSDVDGLYDKN 173 (251)
T ss_pred CEEEEecCcCEEEeCC
Confidence 4567899999999765
No 301
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=32.86 E-value=99 Score=28.91 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=25.1
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
+.++.|++++.+||+.+..++.+.+..|
T Consensus 601 ~CrsAGIkvimVTgdhpiTAkAiA~~vg 628 (1019)
T KOG0203|consen 601 KCRSAGIKVIMVTGDHPITAKAIAKSVG 628 (1019)
T ss_pred hhhhhCceEEEEecCccchhhhhhhhee
Confidence 4567899999999999999999999876
No 302
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.72 E-value=98 Score=24.26 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=33.1
Q ss_pred eCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEE-EcCCCHHH-HHHHHHhCCCCCCCEEEecCCe
Q 040434 15 DLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVF-STGRSPTI-YKQLRKEKPLLTPDITIMSVGT 80 (141)
Q Consensus 15 DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~vi-aTGR~~~~-~~~~~~~~~l~~p~~~I~~nGa 80 (141)
.+||-++++-. .++...+...+.+.|+..++ +|-.+... ++.+.+. . ..+-|+++.+|.
T Consensus 117 GvdGviipDLp-----~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~-s-~gfIY~vs~~Gv 177 (258)
T PRK13111 117 GVDGLIIPDLP-----PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH-A-SGFVYYVSRAGV 177 (258)
T ss_pred CCcEEEECCCC-----HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh-C-CCcEEEEeCCCC
Confidence 46777776532 12333333345567877666 88888655 4444443 2 234466777774
No 303
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=32.65 E-value=1e+02 Score=25.56 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=28.2
Q ss_pred eEEEEeCCCCCCCCCCCC-h--------------HHHHHHHHHHHHHhCCC-ceEEEEcCCCHHHHH
Q 040434 10 LMIVSDLDLTMVDHDDGE-N--------------LSLLRFNALWEAHYRQD-SLLVFSTGRSPTIYK 60 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~-~--------------~~~~~l~~~l~~~~~~g-~~~viaTGR~~~~~~ 60 (141)
-.|.+|||.|....+-.. + ..+.-..++.+.+.+.| ..+.++|--+.....
T Consensus 162 igiISDiDDTV~~T~V~~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~ 228 (373)
T COG4850 162 IGIISDIDDTVKVTGVTEGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFP 228 (373)
T ss_pred eeeeeccccceEecccccchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhHH
Confidence 468999999998766210 0 11111222233344444 788888766655433
No 304
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=32.62 E-value=67 Score=19.38 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=22.7
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
|-.+-+..|-+ +..+++.+++..+.+.|.-||..|-
T Consensus 7 g~~~~~~~~~t---l~~ll~~l~~~~~~vaVavN~~iv~ 42 (66)
T PRK08053 7 DQPMQCAAGQT---VHELLEQLNQLQPGAALAINQQIIP 42 (66)
T ss_pred CeEEEcCCCCC---HHHHHHHcCCCCCcEEEEECCEEeC
Confidence 44444544444 4555666666666788888888874
No 305
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=32.04 E-value=31 Score=29.19 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=17.9
Q ss_pred CCCCCceEEEEeCCCCCCCCCCC
Q 040434 4 LDGSARLMIVSDLDLTMVDHDDG 26 (141)
Q Consensus 4 ~~~~~~~li~~DlDGTLl~~~~~ 26 (141)
++..+...+.+|||+||.....+
T Consensus 22 l~l~~i~~~GfdmDyTL~~Y~~~ 44 (424)
T KOG2469|consen 22 LNLENIGIVGFDMDYTLARYNLP 44 (424)
T ss_pred hhhhcCcEEeeccccchhhhccc
Confidence 34456789999999999987643
No 306
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=31.82 E-value=1.3e+02 Score=18.84 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=30.6
Q ss_pred eEEEEeCCCC-CCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 10 LMIVSDLDLT-MVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 10 ~li~~DlDGT-Ll~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
+-+.+|+-+. .+++ ..+..+..+.+++.++|..+.++ |-+. .+..++...++
T Consensus 42 ~~lilD~~~v~~iDs-----s~~~~L~~~~~~~~~~~~~~~l~-~~~~-~~~~~l~~~g~ 94 (107)
T cd07042 42 KVVILDLSAVNFIDS-----TAAEALEELVKDLRKRGVELYLA-GLNP-QVRELLERAGL 94 (107)
T ss_pred eEEEEECCCCchhhH-----HHHHHHHHHHHHHHHCCCEEEEe-cCCH-HHHHHHHHcCc
Confidence 5667777764 3332 45556665555556677777776 3333 66666666554
No 307
>PF04536 TPM: TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase; InterPro: IPR007621 This is a family of uncharacterised proteins. They are found in both eukarya and eubacteria. In eubacteria the region is towards the N-terminal of the protein and is accompanied by an N-terminal signal sequence. The C-terminal of eubacterial proteins typically contains one or more putative transmembrane regions. In eukaryotes the region is not accompanied by a signal sequence.; PDB: 3PTJ_A 3PW9_A 3PVH_A 2KPT_A 2KW7_A.
Probab=31.77 E-value=1.5e+02 Score=19.36 Aligned_cols=53 Identities=19% Similarity=-0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHh-CCCceEEEEcCCCH-----HH-HHHHHHhCCCCCCCEEEecCCeEEEE
Q 040434 29 LSLLRFNALWEAHY-RQDSLLVFSTGRSP-----TI-YKQLRKEKPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 29 ~~~~~l~~~l~~~~-~~g~~~viaTGR~~-----~~-~~~~~~~~~l~~p~~~I~~nGa~I~~ 84 (141)
+...++...++++. ..|+.++++|=++. .. +.++++.+++..+ -+.||-.|+.
T Consensus 5 ~~~~~l~~~l~~~~~~t~~~i~Vvtv~~~~~~~~~~~A~~~~~~~~~g~~---~~~~gvlilv 64 (119)
T PF04536_consen 5 EERERLNQALAKLEKKTGVQIVVVTVPSLPGQDIEDYAQQLFERWGLGDG---ECNNGVLILV 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHC--EEEEEEESB-TTS-HHHHHHHHHHHHSTTCC---CTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCHHHHHHHHHHHhCCCCc---cccCcEEEEE
Confidence 45566666555554 47888888884444 22 5556676665421 1345555554
No 308
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=30.53 E-value=1.1e+02 Score=26.04 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=24.6
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
+++.|+.+++.||.+...+..+.+++++
T Consensus 359 l~~~gi~~~~ltGD~~~~a~~ia~~lgi 386 (499)
T TIGR01494 359 LREAGIRVIMLTGDNVLTAKAIAKELGI 386 (499)
T ss_pred HHHCCCeEEEEcCCCHHHHHHHHHHcCc
Confidence 3457999999999999999999999774
No 309
>KOG3212 consensus Uncharacterized conserved protein related to IojAP [Function unknown]
Probab=30.47 E-value=49 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCce-------------EEEEcCCCHHHHHHH
Q 040434 29 LSLLRFNALWEAHYRQDSL-------------LVFSTGRSPTIYKQL 62 (141)
Q Consensus 29 ~~~~~l~~~l~~~~~~g~~-------------~viaTGR~~~~~~~~ 62 (141)
..++.+..+|...+.+++. +||||||+...+..+
T Consensus 69 ~~ve~vv~lLrdenadDVfVi~vpeem~y~dh~VIcSgrs~rhl~ai 115 (208)
T KOG3212|consen 69 LTVEEVVKLLRDENADDVFVIPVPEEMFYADHTVICSGRSDRHLRAI 115 (208)
T ss_pred hhHHHHHHHHHhcccCceEEEeccccceeeeeEEEEecCchHHHHHH
Confidence 3566666666555555654 579999998776554
No 310
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=30.19 E-value=65 Score=27.62 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.9
Q ss_pred ceEE-EEeCCCCCCCCCCCChHHH
Q 040434 9 RLMI-VSDLDLTMVDHDDGENLSL 31 (141)
Q Consensus 9 ~~li-~~DlDGTLl~~~~~~~~~~ 31 (141)
-|+| ++|.|||+++.++.+...+
T Consensus 261 akVVavSD~~G~iy~~~Gld~~~l 284 (454)
T PTZ00079 261 AKVLTMSDSDGYIHEPNGFTKEKL 284 (454)
T ss_pred CEEEEEEcCCCcEECCCCCCHHHH
Confidence 4777 9999999999986544444
No 311
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=30.08 E-value=1.2e+02 Score=23.59 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcC
Q 040434 30 SLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
.+..+..+|+..++-+++++++|+
T Consensus 147 ~l~~lr~~lrl~rk~~v~ivvtS~ 170 (229)
T COG1603 147 LLSFLRSLLRLARKYDVPIVVTSD 170 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCC
Confidence 444455544433344666666665
No 312
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=29.78 E-value=2e+02 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=12.7
Q ss_pred ceEEEEeCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDH 23 (141)
Q Consensus 9 ~~li~~DlDGTLl~~ 23 (141)
..++++|+||++-..
T Consensus 45 ~~i~v~dld~~~~g~ 59 (233)
T PRK00748 45 KWLHLVDLDGAKAGK 59 (233)
T ss_pred CEEEEEeCCccccCC
Confidence 479999999999764
No 313
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=29.58 E-value=1.1e+02 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.049 Sum_probs=22.2
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEK 66 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~ 66 (141)
++++++|++++|+|..+......+++..
T Consensus 105 ~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~ 132 (220)
T TIGR01691 105 EAWLQLGLRLAVYSSGSVPAQKLLFGHS 132 (220)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence 3445789999999999988888777664
No 314
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=29.48 E-value=1.5e+02 Score=21.72 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=30.2
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
..+|++|+.|.-+.+ +. |.+.+..++..|-.++++=|=+..--..+.++
T Consensus 68 ~~vi~Ld~~Gk~~sS-----e~---fA~~l~~~~~~G~~i~f~IGG~~Gl~~~~~~~ 116 (155)
T COG1576 68 SYVVLLDIRGKALSS-----EE---FADFLERLRDDGRDISFLIGGADGLSEAVKAR 116 (155)
T ss_pred CeEEEEecCCCcCCh-----HH---HHHHHHHHHhcCCeEEEEEeCcccCCHHHHHH
Confidence 378999998887776 23 33333444556766777767666555555443
No 315
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=29.10 E-value=29 Score=24.52 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.3
Q ss_pred CCCceEEEEeCCCCCCCC
Q 040434 6 GSARLMIVSDLDLTMVDH 23 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~ 23 (141)
.+.+.+++|||.+||=..
T Consensus 42 ~~~P~iV~FDmK~Tld~F 59 (128)
T PRK13717 42 LNAPVTAAFNMKQTVDAF 59 (128)
T ss_pred cCCCeEEEEehHHHHHHH
Confidence 456789999999998543
No 316
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=28.87 E-value=1e+02 Score=19.21 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=13.7
Q ss_pred CCceEEEEcCCCHHHHHHHHHh
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~ 65 (141)
.|.+++|+-||.......+...
T Consensus 2 ~g~rVli~GgR~~~D~~~i~~~ 23 (71)
T PF10686_consen 2 EGMRVLITGGRDWTDHELIWAA 23 (71)
T ss_pred CCCEEEEEECCccccHHHHHHH
Confidence 3667777777777654444333
No 317
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=28.83 E-value=2.8e+02 Score=21.63 Aligned_cols=107 Identities=10% Similarity=0.016 Sum_probs=64.3
Q ss_pred CCceEEEEeCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEE-EEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 7 SARLMIVSDLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLV-FSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~v-iaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
..+-++..|..|-=+..+.+ .+..+..+.+.+..++.+|++++ +.-|+..+..---. |+- -+-+++-+|+.|
T Consensus 64 krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~---Glq-A~rl~AL~ga~i 139 (234)
T PF06833_consen 64 KRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAH---GLQ-ANRLIALPGAMI 139 (234)
T ss_pred CCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHH---HHH-hcchhcCCCCee
Confidence 34578889998877766521 13566666666677778898766 88999988743222 221 245777789999
Q ss_pred EECCCccccccHHHHhccCCChHHHHHHHhcCCCCcccccC
Q 040434 83 VYGESMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCL 123 (141)
Q Consensus 83 ~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~ 123 (141)
+.=+ ..-..++-.. +.+.++++-+..|-+-+..++
T Consensus 140 ~vM~-----~~s~ARVTk~-~ve~Le~la~s~PvfA~gi~n 174 (234)
T PF06833_consen 140 HVMG-----KPSAARVTKR-PVEELEELAKSVPVFAPGIEN 174 (234)
T ss_pred ecCC-----hHHhHHHhhc-CHHHHHHHhhcCCCcCCCHHH
Confidence 8622 1112223222 455666666666655444433
No 318
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=28.72 E-value=1.6e+02 Score=22.29 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=29.4
Q ss_pred eEEEEeCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEEEEcCCC
Q 040434 10 LMIVSDLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLVFSTGRS 55 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~viaTGR~ 55 (141)
+.++.-|=|+.+.+..+ +.+.++++.+.+.++...|..+++++|-.
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~G 50 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGG 50 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45778888998865321 23556666665555555677788777554
No 319
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=28.72 E-value=2.3e+02 Score=26.62 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=37.8
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..|.|.-+=|-+=+.+ ++...++. .+++.|+.+...||-+...+..+.+++|+.
T Consensus 571 ~~LtFvGlVGi~DPPR---~ev~~ai~----~c~~aGIrV~mITGD~~~TA~AI~r~iGi~ 624 (972)
T KOG0202|consen 571 SDLTFVGLVGILDPPR---PEVADAIE----LCRQAGIRVIMITGDNKETAEAIAREIGIF 624 (972)
T ss_pred cceEEEEEeeccCCCc---hhHHHHHH----HHHHcCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 3566665555443333 23333433 345789999999999999999999999874
No 320
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=28.69 E-value=2.6e+02 Score=21.15 Aligned_cols=45 Identities=20% Similarity=0.109 Sum_probs=22.6
Q ss_pred eEEEEeCC--CCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC--CCHHHHHHHHH
Q 040434 10 LMIVSDLD--LTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG--RSPTIYKQLRK 64 (141)
Q Consensus 10 ~li~~DlD--GTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG--R~~~~~~~~~~ 64 (141)
.+|++|+| ||+-+.+ -+.++.+.+ .-.++ ++++| |++..+.++.+
T Consensus 156 ~ii~tdI~~dGt~~G~d---~eli~~i~~------~~~~p-via~GGi~s~ed~~~l~~ 204 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPN---LELLTKTLE------LSEHP-VMLGGGISGVEDLELLKE 204 (221)
T ss_pred EEEEEECCccccCCCCC---HHHHHHHHh------hCCCC-EEEeCCCCCHHHHHHHHH
Confidence 46777776 6754432 122233221 12344 45555 67777776443
No 321
>COG4725 IME4 Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]
Probab=28.69 E-value=81 Score=23.53 Aligned_cols=47 Identities=6% Similarity=-0.011 Sum_probs=33.3
Q ss_pred HHHHhCCC-ceEEEEcCCCHHHHHHHHHhCCCCCCCEE----EecCCeEEEE
Q 040434 38 WEAHYRQD-SLLVFSTGRSPTIYKQLRKEKPLLTPDIT----IMSVGTEIVY 84 (141)
Q Consensus 38 l~~~~~~g-~~~viaTGR~~~~~~~~~~~~~l~~p~~~----I~~nGa~I~~ 84 (141)
+-++...| +.+..+|||.+....+-++.+|+..-..+ .+..|..++.
T Consensus 49 v~~L~d~g~~i~lw~T~~hl~~~~ecL~~WGf~~ks~~~W~Ktt~~G~kv~~ 100 (198)
T COG4725 49 VGQLADMGCLIYLWATAPHLAFTVECLKAWGFEYKSFMAWRKTTAAGRKVRM 100 (198)
T ss_pred hhHhhhCCcEEEEEecChHHHHHHHHHHHhCcceeEEEEEeeecccCceEEe
Confidence 34555555 88999999999999999999987532111 4556655544
No 322
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.62 E-value=2e+02 Score=19.78 Aligned_cols=42 Identities=5% Similarity=0.018 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCC
Q 040434 30 SLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTP 71 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p 71 (141)
....+.++.+++.++|+.|+-.|=.+...+.+++++.+++.|
T Consensus 49 ~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~ 90 (154)
T PRK09437 49 QACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFT 90 (154)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCe
Confidence 445566665556668888887777788888888888776544
No 323
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=28.31 E-value=28 Score=29.01 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=14.7
Q ss_pred CCCCCceEEEEeCCC--CCCCC
Q 040434 4 LDGSARLMIVSDLDL--TMVDH 23 (141)
Q Consensus 4 ~~~~~~~li~~DlDG--TLl~~ 23 (141)
+.-+..+|+++|||| ||.+-
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred hccccceEeeccCcCceeEeee
Confidence 344567999999999 55554
No 324
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=28.16 E-value=54 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.081 Sum_probs=36.4
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.++.=|.|+++.+.. .. +..+.+.+..+.+.|.++++++|-. ..+..+++.+++.
T Consensus 2 ~~ViK~GGs~l~~~~--~~-~~~~~~~i~~l~~~g~~vvvV~g~g-~~~~~~~~~~~~~ 56 (242)
T PF00696_consen 2 TIVIKLGGSSLTDKD--EE-LRELADDIALLSQLGIKVVVVHGGG-SFTDELLEKYGIE 56 (242)
T ss_dssp EEEEEE-HHGHSSHS--HH-HHHHHHHHHHHHHTTSEEEEEESSH-HHHHHHHHHCTHT
T ss_pred eEEEEECchhhCCch--HH-HHHHHHHHHHHHhCCCeEEEEECCh-hhcCchHHhccCC
Confidence 456667788887631 13 5666655555567899999999955 5677777776654
No 325
>PRK09411 carbamate kinase; Reviewed
Probab=28.08 E-value=88 Score=25.27 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=14.1
Q ss_pred CceEEEEeCCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDHD 24 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~ 24 (141)
...+++||.||-+.+..
T Consensus 216 d~LIiLTDVdGV~~n~~ 232 (297)
T PRK09411 216 DGLVILTDADAVYENWG 232 (297)
T ss_pred CEEEEEeCchhhccCCC
Confidence 46789999999998754
No 326
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=28.00 E-value=1.7e+02 Score=18.72 Aligned_cols=56 Identities=13% Similarity=-0.075 Sum_probs=33.9
Q ss_pred CceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 8 ARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
..+.+..|+-|.=.-+ ...+..+..+.++++++|..+.++- ....+.+.++..++.
T Consensus 38 ~~~~vilDls~v~~iD----ssgl~~L~~l~~~~~~~g~~l~l~~--~~~~v~~~l~~~gl~ 93 (100)
T cd06844 38 AGKTIVIDISALEFMD----SSGTGVLLERSRLAEAVGGQFVLTG--ISPAVRITLTESGLD 93 (100)
T ss_pred CCCEEEEECCCCcEEc----HHHHHHHHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHhCch
Confidence 3567888887753332 2455566655555667787777764 335566666665553
No 327
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=27.93 E-value=2.6e+02 Score=22.02 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 28 NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
..+...+-++|.+++++|..++++| - ++..+.+. .|-+||-|+..+..+.
T Consensus 172 ~~~~~~i~~lL~~l~~eg~tIl~vt-H---DL~~v~~~-----~D~vi~Ln~~~~~~G~ 221 (254)
T COG1121 172 VAGQKEIYDLLKELRQEGKTVLMVT-H---DLGLVMAY-----FDRVICLNRHLIASGP 221 (254)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEe-C---CcHHhHhh-----CCEEEEEcCeeEeccC
Confidence 4567778888888887788888776 2 33333332 3669999999998753
No 328
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=27.53 E-value=95 Score=20.55 Aligned_cols=25 Identities=8% Similarity=-0.101 Sum_probs=18.2
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
+.++++|.+++..|+.+-..+.+..
T Consensus 67 ~~a~~~g~~vi~iT~~~~s~la~~a 91 (126)
T cd05008 67 RLAKEKGAKTVAITNVVGSTLAREA 91 (126)
T ss_pred HHHHHcCCeEEEEECCCCChHHHhC
Confidence 3456788999999998777666543
No 329
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=27.23 E-value=91 Score=18.62 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=21.5
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
|-.+-+..|-+ +..+++.+++....+.|.-||..+-
T Consensus 6 g~~~~~~~~~t---v~~ll~~l~~~~~~i~V~vNg~~v~ 41 (65)
T cd00565 6 GEPREVEEGAT---LAELLEELGLDPRGVAVALNGEIVP 41 (65)
T ss_pred CeEEEcCCCCC---HHHHHHHcCCCCCcEEEEECCEEcC
Confidence 44444444444 4555666666655677888887764
No 330
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=27.17 E-value=1.8e+02 Score=21.03 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCc-eEEEEcCCCHHHHHHHHH
Q 040434 10 LMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDS-LLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~-~~viaTGR~~~~~~~~~~ 64 (141)
.+|++|-.|..+++ ..... .|.+....|. .++|+-|=+..--..+.+
T Consensus 69 ~~i~LDe~Gk~~sS-----~~fA~---~l~~~~~~g~~~i~F~IGGa~G~~~~v~~ 116 (157)
T PRK00103 69 RVIALDERGKQLSS-----EEFAQ---ELERWRDDGRSDVAFVIGGADGLSPAVKK 116 (157)
T ss_pred EEEEEcCCCCcCCH-----HHHHH---HHHHHHhcCCccEEEEEcCccccCHHHHH
Confidence 56777777777765 22222 2222233443 566666655444444443
No 331
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=26.61 E-value=88 Score=22.02 Aligned_cols=42 Identities=10% Similarity=0.044 Sum_probs=26.8
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
|++.|+=.=+..........+..+++++..++++|+++++.+
T Consensus 2 LlvID~Q~~f~~~~~~~~~~~~~i~~l~~~ar~~g~pVi~~~ 43 (157)
T cd01012 2 LLLVDVQEKLAPAIKSFDELINNTVKLAKAAKLLDVPVILTE 43 (157)
T ss_pred EEEEeCcHHHHHhhcCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 567777554443211123566777777777778999999874
No 332
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=26.41 E-value=1.7e+02 Score=22.19 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=25.3
Q ss_pred eEEEEeCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 10 LMIVSDLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 10 ~li~~DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
++++.-|=|+.+.+..+ +.+.+.++.+.+.+....|.+++++.
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVh 46 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVV 46 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 35778888998864421 23556666665555555555554444
No 333
>PRK09982 universal stress protein UspD; Provisional
Probab=26.35 E-value=2.1e+02 Score=19.41 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCC
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVG 79 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nG 79 (141)
.++.+.+.+|++...+.+..++.+ .|.+|..+|
T Consensus 80 ~~~~~~v~~G~p~~~I~~~A~~~~---aDLIVmG~~ 112 (142)
T PRK09982 80 PKTKLRIERGEMPETLLEIMQKEQ---CDLLVCGHH 112 (142)
T ss_pred CcceEEEEecCHHHHHHHHHHHcC---CCEEEEeCC
Confidence 457788999999999999988754 577776443
No 334
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=26.18 E-value=1.9e+02 Score=22.38 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=6.4
Q ss_pred CCCceEEEEc
Q 040434 43 RQDSLLVFST 52 (141)
Q Consensus 43 ~~g~~~viaT 52 (141)
++|+.+-++=
T Consensus 128 ~n~VAIe~~L 137 (216)
T PRK03892 128 KRGVAIGFSL 137 (216)
T ss_pred HcCeEEEEec
Confidence 5677776653
No 335
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=26.15 E-value=1.6e+02 Score=21.26 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=23.3
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHH
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~ 64 (141)
..+|++|..|-.+++ .....+ |.+....|..++++-|=+..--..+.+
T Consensus 66 ~~~i~LDe~Gk~~sS-----~~fA~~---l~~~~~~g~~i~FvIGGa~G~~~~v~~ 113 (153)
T TIGR00246 66 AHVVTLDIPGKPWTT-----PQLADT---LEKWKTDGRDVTLLIGGPEGLSPTCKA 113 (153)
T ss_pred CeEEEEcCCCCcCCH-----HHHHHH---HHHHhccCCeEEEEEcCCCcCCHHHHH
Confidence 456777777766665 222222 222223344566666655444444443
No 336
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=25.96 E-value=1e+02 Score=20.27 Aligned_cols=42 Identities=12% Similarity=0.005 Sum_probs=27.5
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~ 84 (141)
+.+.|+.+++++==+...+.++.+..+++.| ++++.-..+|.
T Consensus 9 l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~--ly~D~~~~lY~ 50 (115)
T PF13911_consen 9 LEAAGVKLVVIGCGSPEGIEKFCELTGFPFP--LYVDPERKLYK 50 (115)
T ss_pred HHHcCCeEEEEEcCCHHHHHHHHhccCCCCc--EEEeCcHHHHH
Confidence 3457888777665555458888877666654 66666556654
No 337
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.93 E-value=2.4e+02 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=22.2
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCC
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVG 79 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nG 79 (141)
.+.+.|+.+.+........+..+.++.-...+|.+|+..|
T Consensus 34 ~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 34 RLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred HHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECC
Confidence 3456788766544444666777765532233565554433
No 338
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.92 E-value=82 Score=21.53 Aligned_cols=34 Identities=12% Similarity=-0.033 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 30 SLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
.+++=.+.|+++++-|..+=+.|--.+..++++.
T Consensus 39 WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la 72 (105)
T TIGR03765 39 WLQQNAAALKSLGAVGLVVNVETAAALQRLRALA 72 (105)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc
Confidence 3333333345555556666666665566555544
No 339
>PRK14558 pyrH uridylate kinase; Provisional
Probab=25.88 E-value=1.3e+02 Score=22.67 Aligned_cols=41 Identities=2% Similarity=-0.108 Sum_probs=25.7
Q ss_pred EEEeCCCCCCCCC-C--CChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 12 IVSDLDLTMVDHD-D--GENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 12 i~~DlDGTLl~~~-~--~~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
++.=+=|.++.+. . .+.+.+..+.+.+.++.++|+.+++++
T Consensus 3 iviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~ 46 (231)
T PRK14558 3 VLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVI 46 (231)
T ss_pred EEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3455666666443 1 223566677666666667788988886
No 340
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=25.80 E-value=1.1e+02 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=18.0
Q ss_pred HhCCCceEEEEcCCCHHHHHHHH
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
++++|.+++..|+..-..+.+..
T Consensus 76 ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 76 AKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp HHHTTSEEEEEESSTTSHHHHHS
T ss_pred HHhcCCeEEEEeCCCCCchhhhC
Confidence 45678999999988887776665
No 341
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=25.71 E-value=1.2e+02 Score=23.86 Aligned_cols=98 Identities=12% Similarity=0.099 Sum_probs=52.6
Q ss_pred EEEEeCCCCCCC--CCCCChHHHHHHH-HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCC
Q 040434 11 MIVSDLDLTMVD--HDDGENLSLLRFN-ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGES 87 (141)
Q Consensus 11 li~~DlDGTLl~--~~~~~~~~~~~l~-~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~ 87 (141)
-..+|-+|.++- .|-.-+.++..+. ..|.+-..-.-.+++.|||-..++.......|++ +|.+.++-.
T Consensus 162 aal~~~~g~~l~~~EDIGRHNAvDKviG~all~g~~~~~~~l~~SGR~s~emv~Ka~~aGip----vivS~saPT----- 232 (263)
T PRK00724 162 AALLCPDGELLAVREDVGRHNALDKLIGAALRAGIPLRDGALLVSGRASSEMVQKAAMAGIP----ILVAVSAPT----- 232 (263)
T ss_pred EEEEcCCCCEEEEEecCchhHHHHHHHHHHHHcCCCccCcEEEEeCCchHHHHHHHHHcCCc----EEEEcccch-----
Confidence 344677777643 3211134555544 2221111123458999999999998888877764 444433322
Q ss_pred ccccccHHHHhccCCChHHHHHHHhcCCCCcccccCCCcceeeeeecc
Q 040434 88 MVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWMVLMEQE 135 (141)
Q Consensus 88 ~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~~~~~~~ 135 (141)
..-.++.+.+ ++++-.-...++|..|.++|
T Consensus 233 -----------------~lAVelA~~~-giTLiGf~R~~r~~vYs~~e 262 (263)
T PRK00724 233 -----------------SLAVELAEEL-GLTLVGFARGGRFNIYTHPQ 262 (263)
T ss_pred -----------------HHHHHHHHHh-CCEEEEEecCCCeEEcCCCC
Confidence 1222333333 55555444455677777665
No 342
>PRK00942 acetylglutamate kinase; Provisional
Probab=25.62 E-value=1.1e+02 Score=23.98 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=34.2
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.++++.=|.|+++.+.. ....+.+.+..+.+.|.+++++.|=.. .+.+.++.++..
T Consensus 23 ~~~iViK~GGs~l~~~~----~~~~l~~~i~~l~~~g~~vVlVhGgg~-~~~~~~~~~g~~ 78 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEE----LKEAFARDIVLLKQVGINPVVVHGGGP-QIDELLKKLGIE 78 (283)
T ss_pred CCeEEEEEChHHhcCcc----hHHHHHHHHHHHHHCCCCEEEEeCChH-HHHHHHHHCCCC
Confidence 46788889999997642 233343333444566777777777543 455566655543
No 343
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=25.59 E-value=1.5e+02 Score=25.05 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=34.8
Q ss_pred HhCCCceEEEEcCCCHHHHHHHHHhCC------------CCCCCEEEecCCeEEE
Q 040434 41 HYRQDSLLVFSTGRSPTIYKQLRKEKP------------LLTPDITIMSVGTEIV 83 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~~~~~~~~~~------------l~~p~~~I~~nGa~I~ 83 (141)
+.++|+.-+..-+|++.-+.++.++++ +...|++|++.|+.-+
T Consensus 197 L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ 251 (414)
T COG0373 197 LAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHP 251 (414)
T ss_pred HHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCcc
Confidence 457899999999999999999888876 2346889998888544
No 344
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=25.51 E-value=2.6e+02 Score=22.32 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=34.8
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
...++|-.-++.|+ .. ....++-+.|+++++.| ..+++||...+.++.....
T Consensus 131 adipVV~iSi~~~~-~~-----~~h~~lG~al~~lree~-vlilaSGs~~H~l~~~~~~ 182 (268)
T COG3384 131 ADIPVVQISIDCTL-SP-----ADHYELGRALRKLREEG-VLILASGSLVHNLRLLKWA 182 (268)
T ss_pred cCCcEEEEecCCCC-CH-----HHHHHHHHHHHHHHhCC-EEEEecCcceeehhhhhhc
Confidence 45678888888888 22 23344444455666666 7788999888877766543
No 345
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.39 E-value=1.1e+02 Score=20.18 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=9.9
Q ss_pred hCCCceEEEEcCCCHHHHH
Q 040434 42 YRQDSLLVFSTGRSPTIYK 60 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~ 60 (141)
+++|++++..|++.-..+.
T Consensus 84 ~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 84 KERGAKVIAITDSANSPLA 102 (139)
T ss_pred HHcCCeEEEEcCCCCChhH
Confidence 3455666666665544333
No 346
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=25.08 E-value=1.1e+02 Score=18.62 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCCCCEEEecCCeEEEE
Q 040434 58 IYKQLRKEKPLLTPDITIMSVGTEIVY 84 (141)
Q Consensus 58 ~~~~~~~~~~l~~p~~~I~~nGa~I~~ 84 (141)
++..+++.++++....+|.-||..++.
T Consensus 25 tv~~ll~~l~~~~~~v~v~vNg~iv~~ 51 (70)
T PRK08364 25 KVADILRAVGFNTESAIAKVNGKVALE 51 (70)
T ss_pred cHHHHHHHcCCCCccEEEEECCEECCC
Confidence 466677777776556788889988853
No 347
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=25.04 E-value=2.3e+02 Score=21.61 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=23.3
Q ss_pred EEEecCCeEEEECCCccccccHHHHhcc-CCChHHHHHHHhcCCCC
Q 040434 73 ITIMSVGTEIVYGESMVHDDGWENYLNH-KWDRGIVLEETAKFPEL 117 (141)
Q Consensus 73 ~~I~~nGa~I~~~~~~~~d~~~~~~i~~-~~~~~~v~~il~~~~~l 117 (141)
.+|+.||..|.+-. +.. .+++..+.+.++..||+
T Consensus 162 p~vTdnGN~IiD~~-----------~~~~~~d~~~l~~~l~~i~GV 196 (218)
T TIGR00021 162 PVVTDNGNYILDCH-----------FGKIIPDPEALEEELKSIPGV 196 (218)
T ss_pred cEECCCCCEEEEee-----------CCCCCCCHHHHHHHHhcCCCE
Confidence 48899999888731 121 34667778888888875
No 348
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.84 E-value=2.5e+02 Score=21.65 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=41.8
Q ss_pred ceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCccccccHHHHhccCCChHHHHHHHhcCCCCcccccCCC
Q 040434 46 SLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFF 125 (141)
Q Consensus 46 ~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q 125 (141)
-.+++.|||-..++.......|++ +|.+.++- -..-.++.+.. ++++-.-...
T Consensus 171 ~~~l~~SGRis~emv~Ka~~aGIp----vlvS~sap----------------------T~lavelA~~~-giTLigf~R~ 223 (237)
T TIGR00129 171 KGFILYSGRISSEMVQKAARCGVP----IIASKSAP----------------------TDLAIEVAEES-NITLIGFARN 223 (237)
T ss_pred CcEEEEeCCCcHHHHHHHHHcCCC----EEEEcccc----------------------hHHHHHHHHHh-CCEEEEEecC
Confidence 358999999999988888776753 44332221 12223344443 5666555556
Q ss_pred cceeeeeeccccC
Q 040434 126 SKWMVLMEQEVLS 138 (141)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (141)
+++..|.++|.+.
T Consensus 224 ~r~~vYs~~eRi~ 236 (237)
T TIGR00129 224 GRFNIYTHPERLL 236 (237)
T ss_pred CceEEecChhhcc
Confidence 6788888887763
No 349
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=24.74 E-value=1.7e+02 Score=21.01 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECCCc
Q 040434 33 RFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGESM 88 (141)
Q Consensus 33 ~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~~~ 88 (141)
-|..+..++......+|-..|.+-.....+++.+ +..|+.+|+.+.+
T Consensus 29 Vf~~~~~~~~~~~~pLVCt~G~p~~A~~~LL~~L---------~~~g~~l~y~GDf 75 (152)
T PF09664_consen 29 VFSALADELGASCPPLVCTSGQPSAAARRLLDRL---------AAAGARLYYSGDF 75 (152)
T ss_pred HHHHHHHhcCCCCCeEEEcCCcHHHHHHHHHHHH---------HhCCCEEEEecCC
Confidence 3444434434567888888899888888888763 4568888886644
No 350
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=24.67 E-value=89 Score=29.22 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=39.8
Q ss_pred CceEEEEeCCCCCCCCC---CCC-hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCC
Q 040434 8 ARLMIVSDLDLTMVDHD---DGE-NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPL 68 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~---~~~-~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l 68 (141)
..-.+.+=+||+|..-- +.. +....++. .+.+.|+.++..||-....++.+.+++|+
T Consensus 702 g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~----~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi 762 (951)
T KOG0207|consen 702 GQTVVYVAVNGQLVGVFALEDQVRPDAALAVA----ELKSMGIKVVMLTGDNDAAARSVAQQVGI 762 (951)
T ss_pred CceEEEEEECCEEEEEEEeccccchhHHHHHH----HHHhcCceEEEEcCCCHHHHHHHHHhhCc
Confidence 34567778889887422 111 22333332 34567999999999999999999999884
No 351
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=24.60 E-value=1.8e+02 Score=20.66 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=13.9
Q ss_pred HHHHHHHHhCCCceEEEEcCCCHHH
Q 040434 34 FNALWEAHYRQDSLLVFSTGRSPTI 58 (141)
Q Consensus 34 l~~~l~~~~~~g~~~viaTGR~~~~ 58 (141)
+.+++..+++.|..+.+-||....+
T Consensus 77 l~~ll~~lk~~Gl~i~l~Tg~~~~~ 101 (147)
T TIGR02826 77 LLSLLKIFKEKGLKTCLYTGLEPKD 101 (147)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHH
Confidence 3333344445677777777765543
No 352
>PF13707 RloB: RloB-like protein
Probab=24.56 E-value=1.8e+02 Score=20.76 Aligned_cols=49 Identities=16% Similarity=0.030 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHh
Q 040434 7 SARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKE 65 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~ 65 (141)
.....+++|.| ... .....+.++++.+.++++.+++. .+--++.-++.-
T Consensus 60 ~d~v~~V~D~D----~~~----~~~~~~~~~~~~a~~~~i~l~~S--nPcFE~WlLlHf 108 (183)
T PF13707_consen 60 YDEVWCVFDRD----QND----FEHEKLEEAIKKAKRNKINLAVS--NPCFELWLLLHF 108 (183)
T ss_pred CCEEEEEEeCC----CCc----CcHHHHHHHHHhccccCeEEEEe--cCcHHHHHHHhc
Confidence 34567999999 222 23344555444444555666554 455566656543
No 353
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=24.54 E-value=80 Score=23.91 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCceEEE-----EcCCCHHHHHHHHHh
Q 040434 30 SLLRFNALWEAHYRQDSLLVF-----STGRSPTIYKQLRKE 65 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~vi-----aTGR~~~~~~~~~~~ 65 (141)
+.+.|++++++++++|++|++ -||..-.........
T Consensus 50 t~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~ 90 (316)
T PF00128_consen 50 TMEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNY 90 (316)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTH
T ss_pred hhhhhhhhhhccccccceEEEeeeccccccccccccccccc
Confidence 567788888888899999985 366666665555543
No 354
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=24.54 E-value=3.1e+02 Score=20.94 Aligned_cols=37 Identities=14% Similarity=0.210 Sum_probs=25.5
Q ss_pred hCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCC
Q 040434 42 YRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVG 79 (141)
Q Consensus 42 ~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nG 79 (141)
.+.+..+++..|+.+..+.+.+.+.++..+-.+| .|+
T Consensus 172 ~~~~~~vv~k~~~~~~~i~~~L~~~g~~~~~~~v-~~~ 208 (241)
T PRK05990 172 ADADAAVIMKLGRNLDKVRRVLAALGLLDRALYV-ERA 208 (241)
T ss_pred hCCCCEEEEEeCCcHHHHHHHHHHcCCCCCEEEE-EEC
Confidence 3456667787889999999998887765443333 444
No 355
>PRK04946 hypothetical protein; Provisional
Probab=24.48 E-value=2e+02 Score=21.45 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHhCCCc-eEEEEcCCCHHHHHHHHHhC
Q 040434 28 NLSLLRFNALWEAHYRQDS-LLVFSTGRSPTIYKQLRKEK 66 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~-~~viaTGR~~~~~~~~~~~~ 66 (141)
.++..++...|..+..+|+ .+.|..|+....++..+..+
T Consensus 106 eeA~~~L~~fl~~a~~~g~r~v~IIHGkG~gvLk~~V~~w 145 (181)
T PRK04946 106 LQAKQELGALIAACRKEHVFCACVMHGHGKHILKQQTPLW 145 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEcCCCHhHHHHHHHHH
Confidence 3567777777777776776 56689999987777766654
No 356
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=24.47 E-value=3e+02 Score=20.45 Aligned_cols=50 Identities=8% Similarity=0.036 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 28 NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
....+.+.++|.++.++|..++++|- ....+..+.. ..++-.+|..+..+
T Consensus 170 ~~~~~~l~~~l~~~~~~~~tiii~sH-~~~~~~~~~d-------~i~~l~~G~i~~~~ 219 (237)
T PRK11614 170 PIIIQQIFDTIEQLREQGMTIFLVEQ-NANQALKLAD-------RGYVLENGHVVLED 219 (237)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeC-cHHHHHhhCC-------EEEEEeCCEEEeeC
Confidence 45667777777666666888877774 4444443332 34666788776653
No 357
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=24.25 E-value=1.2e+02 Score=24.78 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCceEEEEcCCCHHHH
Q 040434 30 SLLRFNALWEAHYRQDSLLVFSTGRSPTIY 59 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~viaTGR~~~~~ 59 (141)
...++...++++..+|+.++.++|..=...
T Consensus 138 ~~~~~~~~~~~a~~~GitvvaAsGd~G~~~ 167 (361)
T cd04056 138 YAQRVCNLFAQAAAQGITVLAASGDSGAGG 167 (361)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeCCCCCCCC
Confidence 346677777777789999999999885544
No 358
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.16 E-value=1.5e+02 Score=23.29 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=41.9
Q ss_pred HhCCCc-eEEEEc-CCCHHHHHHHHHhCCCC-----CCCEEEecCCeEEEECCCccccccHHHHhccCCChHHHHHHHhc
Q 040434 41 HYRQDS-LLVFST-GRSPTIYKQLRKEKPLL-----TPDITIMSVGTEIVYGESMVHDDGWENYLNHKWDRGIVLEETAK 113 (141)
Q Consensus 41 ~~~~g~-~~viaT-GR~~~~~~~~~~~~~l~-----~p~~~I~~nGa~I~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~ 113 (141)
+.+.|+ .++++| |+--.-+...++++++. .++|=-+.||..++...+.....-.-..=++.+.++.++.+++.
T Consensus 41 L~~~gi~e~vvV~~g~~~~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~fii~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 41 LAKAGITEFVVVTNGYRADLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMDGRFILVMSDHVYEPSILERLLEA 120 (239)
T ss_pred HHHcCCceEEEEeccchHHHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhcCcEEEEeCCEeecHHHHHHHHhC
Confidence 345565 667777 99999999999987752 23444455577776632221111000001234466777777764
No 359
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=23.69 E-value=1e+02 Score=18.52 Aligned_cols=36 Identities=6% Similarity=-0.036 Sum_probs=23.0
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
|-..-+..+- ++..++..++++....+|.-||..|-
T Consensus 7 G~~~~~~~~~---tl~~ll~~l~~~~~~vav~~N~~iv~ 42 (65)
T PRK05863 7 EEQVEVDEQT---TVAALLDSLGFPEKGIAVAVDWSVLP 42 (65)
T ss_pred CEEEEcCCCC---cHHHHHHHcCCCCCcEEEEECCcCcC
Confidence 4444454443 46677777777766677877777664
No 360
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.50 E-value=1.1e+02 Score=24.18 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCceEEEEcCCCH
Q 040434 31 LLRFNALWEAHYRQDSLLVFSTGRSP 56 (141)
Q Consensus 31 ~~~l~~~l~~~~~~g~~~viaTGR~~ 56 (141)
.+.+.+.++++.++|+.+|.++|..-
T Consensus 131 ~~al~~ai~~A~~~Gi~vVaAAGN~~ 156 (298)
T cd07494 131 LKALAATLQDAVARGIVVVFSAGNGG 156 (298)
T ss_pred hHHHHHHHHHHHHCCcEEEEeCCCCC
Confidence 34566666666689999999999974
No 361
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=23.48 E-value=1.8e+02 Score=21.56 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=32.0
Q ss_pred CCCceEEEEeCCCCCCCCCC----CChHHHHHHHHHHHHHhCCCceEEEE
Q 040434 6 GSARLMIVSDLDLTMVDHDD----GENLSLLRFNALWEAHYRQDSLLVFS 51 (141)
Q Consensus 6 ~~~~~li~~DlDGTLl~~~~----~~~~~~~~l~~~l~~~~~~g~~~via 51 (141)
..+.-|++.|+=.=++.... .....+..+.++++.++++|+.+++.
T Consensus 27 ~~~tALlvID~Q~~f~~~~~~~~~~~~~~~~~i~~li~~ar~~g~pVi~t 76 (203)
T cd01013 27 PKRAVLLVHDMQRYFLDFYDESAEPVPQLIANIARLRDWCRQAGIPVVYT 76 (203)
T ss_pred CCcEEEEEEeChhhhhCccccccchHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 35667999999887765311 11246677777777777899988875
No 362
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=23.46 E-value=1e+02 Score=28.35 Aligned_cols=58 Identities=14% Similarity=-0.069 Sum_probs=34.1
Q ss_pred ceEEEEeCCCC--CCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLT--MVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGT--Ll~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
...|++-+|+= |..... .+.-..+.++.+..++.|++++++|.|+-..+..-++. +++
T Consensus 638 lP~iviiiDe~adlm~~~~--k~ve~~i~rLa~~ara~GIHlilatqRps~dVit~ika-nip 697 (858)
T COG1674 638 LPYIVIIIDEYADLMMVAG--KELEELIARLAQKGRAAGIHLILATQRPSVDVITGIKA-NIP 697 (858)
T ss_pred CCeEEEEEcchHHHhhhhh--HHHHHHHHHHHHhhhhcceEEEEecCCCCcchhHHHHh-CCc
Confidence 34566666653 222211 12234444555556679999999999999965555543 443
No 363
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=23.15 E-value=1.4e+02 Score=18.15 Aligned_cols=26 Identities=8% Similarity=-0.065 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 58 IYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 58 ~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
.+..+++.+++....++|.-||..|-
T Consensus 18 tv~~lL~~l~~~~~~vav~vN~~iv~ 43 (67)
T PRK07696 18 TVAELLTHLELDNKIVVVERNKDILQ 43 (67)
T ss_pred cHHHHHHHcCCCCCeEEEEECCEEeC
Confidence 46677777787655567777887764
No 364
>PLN02621 nicotinamidase
Probab=22.89 E-value=2e+02 Score=21.13 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=31.3
Q ss_pred CCCCceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC
Q 040434 5 DGSARLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 5 ~~~~~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
...+.-|++.|+=.-+... ....+..+++++..++++|+++++..=
T Consensus 17 ~~~~~aLlvID~Q~~f~~~---~~~~v~~i~~Ll~~ar~~~~pVi~t~~ 62 (197)
T PLN02621 17 DPKQAALLVIDMQNYFSSM---AEPILPALLTTIDLCRRASIPVFFTRH 62 (197)
T ss_pred CCCCEEEEEEeChhhhhhh---HHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence 3445579999997766532 134667777777777788988877643
No 365
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=22.86 E-value=1.2e+02 Score=18.81 Aligned_cols=36 Identities=11% Similarity=0.119 Sum_probs=22.4
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
|-.+-++.+. .+..++++++++..-+++.-||..+-
T Consensus 9 g~~~e~~~~~---tv~dLL~~l~~~~~~vav~vNg~iVp 44 (68)
T COG2104 9 GKEVEIAEGT---TVADLLAQLGLNPEGVAVAVNGEIVP 44 (68)
T ss_pred CEEEEcCCCC---cHHHHHHHhCCCCceEEEEECCEEcc
Confidence 3444455553 45566777778765677777777664
No 366
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=22.77 E-value=1.4e+02 Score=22.27 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcC
Q 040434 16 LDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 16 lDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
|-|+.+.+. ..++.+.+.|..+.+.|.+++++.|
T Consensus 4 iGGs~l~~~----~~~~~~~~~i~~l~~~~~~~viV~g 37 (248)
T cd02115 4 FGGSSVSSE----ERLRNLARILVKLASEGGRVVVVHG 37 (248)
T ss_pred eCccccCCH----HHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 567777652 3455555555555556777777666
No 367
>PF10035 DUF2179: Uncharacterized protein conserved in bacteria (DUF2179); InterPro: IPR019264 This entry, found mostly in hypothetical bacterial proteins, has no known function. ; PDB: 3HLU_B.
Probab=22.68 E-value=1.2e+02 Score=17.43 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEe
Q 040434 44 QDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIM 76 (141)
Q Consensus 44 ~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~ 76 (141)
+.+.+++++-+....+++++++.+ |+.+|+
T Consensus 17 ~~~l~~v~~r~e~~~l~~~I~~~D---p~AFi~ 46 (55)
T PF10035_consen 17 KTVLYTVVSRRELPKLKKIIKEID---PKAFIS 46 (55)
T ss_dssp -EEEEEEEECCHHHHHHHHHHCC----TT-EEE
T ss_pred eEEEEEEEeHHHHHHHHHHHHHhC---CCEEEE
Confidence 457889999999999999999743 666654
No 368
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=22.66 E-value=1.9e+02 Score=21.76 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=28.0
Q ss_pred EEEeCCCCCCCCCCC-----------ChHHHHHHHHHHHHHhC-CCceEEEEcCCCH
Q 040434 12 IVSDLDLTMVDHDDG-----------ENLSLLRFNALWEAHYR-QDSLLVFSTGRSP 56 (141)
Q Consensus 12 i~~DlDGTLl~~~~~-----------~~~~~~~l~~~l~~~~~-~g~~~viaTGR~~ 56 (141)
+.+|++|++...... ....+..+.+.|.++.+ ..++.++.++.++
T Consensus 1 l~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~ 57 (222)
T cd07018 1 LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEALEKAAEDDRIKGIVLDLDGL 57 (222)
T ss_pred CEEcCCCcccccCCCCChhhhccCCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCC
Confidence 357899998755432 12356667666666653 5677777765543
No 369
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=22.64 E-value=3e+02 Score=21.89 Aligned_cols=101 Identities=11% Similarity=0.099 Sum_probs=57.0
Q ss_pred eEEEEeCCCCCCCCC--CCChHHHHHHH-HHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEECC
Q 040434 10 LMIVSDLDLTMVDHD--DGENLSLLRFN-ALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYGE 86 (141)
Q Consensus 10 ~li~~DlDGTLl~~~--~~~~~~~~~l~-~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~~ 86 (141)
---.+|.||-|+--. -.-+.++..+. ..|.+=....-.+++.|||--.++-......|++ +|++..+-
T Consensus 161 ~Aal~~~~g~l~~~~EDVGRHNAvDKliG~~~~~G~~~~~~vl~tSGR~S~EmV~Kaa~~Gip----il~S~SAP----- 231 (266)
T COG1526 161 AAALFDPDGELLLVREDVGRHNAVDKLIGRALLEGIPLSGKVLVTSGRASSEMVQKAAMAGIP----ILASVSAP----- 231 (266)
T ss_pred eEEEEcCCCCEEEEEEeccchhHHHHHHHHHHHCCCCcCCeEEEEcCCccHHHHHHHHHhCCc----EEEEcccc-----
Confidence 446788888776433 11124555554 2221111345788999999999999888887764 44332221
Q ss_pred CccccccHHHHhccCCChHHHHHHHhcCCCCcccccCCCcceeeeeecccc
Q 040434 87 SMVHDDGWENYLNHKWDRGIVLEETAKFPELAFQVCLFFSKWMVLMEQEVL 137 (141)
Q Consensus 87 ~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l~~~~~~~q~~~~~~~~~~~~ 137 (141)
-+--.++.+.+ ++++-.--..+.|-.|.++|.|
T Consensus 232 -----------------T~Lai~~Ae~~-~iTLvgf~R~~~fniYt~~~Ri 264 (266)
T COG1526 232 -----------------TSLAIEAAERL-GLTLVGFVRGGRFNIYTHPERI 264 (266)
T ss_pred -----------------hHHHHHHHHHc-CCEEEEEecCCcceEecCHHhh
Confidence 12222333343 5555555555667777777665
No 370
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.61 E-value=2.2e+02 Score=21.93 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=24.1
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHhCCC-ceEEEEcCCCHH
Q 040434 18 LTMVDHDDGENLSLLRFNALWEAHYRQD-SLLVFSTGRSPT 57 (141)
Q Consensus 18 GTLl~~~~~~~~~~~~l~~~l~~~~~~g-~~~viaTGR~~~ 57 (141)
|=+++...+.......+.+.+.++.+.+ +++++..|+.-.
T Consensus 47 GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~ 87 (253)
T TIGR00619 47 GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDS 87 (253)
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCC
Confidence 3344443332344455556666666666 899999999654
No 371
>COG4519 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.60 E-value=75 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=22.8
Q ss_pred ccCCChHHHHHHHhcCCCCcccccCCCcc
Q 040434 99 NHKWDRGIVLEETAKFPELAFQVCLFFSK 127 (141)
Q Consensus 99 ~~~~~~~~v~~il~~~~~l~~~~~~~q~~ 127 (141)
...|++..+.++++.+|++....+..|..
T Consensus 31 ~TGwPRRT~QDvikAlpglgi~l~FvQ~G 59 (95)
T COG4519 31 ATGWPRRTAQDVIKALPGLGIVLEFVQEG 59 (95)
T ss_pred HcCCchhHHHHHHHhCcCCCeEEEeeecc
Confidence 34899999999999999987776665533
No 372
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=22.53 E-value=1.1e+02 Score=24.08 Aligned_cols=42 Identities=7% Similarity=0.019 Sum_probs=25.7
Q ss_pred eCCCCCCCCCCC---ChHHHHHHHHHHHHHhCCCceEEEEcCCCH
Q 040434 15 DLDLTMVDHDDG---ENLSLLRFNALWEAHYRQDSLLVFSTGRSP 56 (141)
Q Consensus 15 DlDGTLl~~~~~---~~~~~~~l~~~l~~~~~~g~~~viaTGR~~ 56 (141)
-.++++++|... ..++-+.+++-+..+.+.|...++|.|.+.
T Consensus 88 G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvGEtl 132 (251)
T COG0149 88 GAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVGETL 132 (251)
T ss_pred CCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcCCCH
Confidence 357788887621 012222222223445578999999999999
No 373
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=22.53 E-value=1.7e+02 Score=27.64 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=27.7
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLT 70 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~ 70 (141)
+.+++.|+++.+.||=....+..+.+..++..
T Consensus 641 ~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~ 672 (1057)
T TIGR01652 641 ELLRQAGIKIWVLTGDKVETAINIGYSCRLLS 672 (1057)
T ss_pred HHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCC
Confidence 44567899999999999999999999988753
No 374
>PLN02512 acetylglutamate kinase
Probab=22.46 E-value=3.7e+02 Score=21.44 Aligned_cols=56 Identities=7% Similarity=-0.134 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.+.++.=|.|+++.+.. ....+.+.+..+...|.+++++=|-. ..+.+.++.+++.
T Consensus 47 ~~tiVIKlGGs~i~d~~----~~~~~~~di~~l~~~g~~iVlVHGgG-~~i~~~~~~~gi~ 102 (309)
T PLN02512 47 GKTVVVKYGGAAMKDPE----LKAGVIRDLVLLSCVGLRPVLVHGGG-PEINSWLKKVGIE 102 (309)
T ss_pred CCeEEEEECCeeccChh----HHHHHHHHHHHHHHCCCCEEEEECCc-HHHHHHHHHcCCC
Confidence 36688889999987631 22223322333456788888777733 3667777777764
No 375
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.46 E-value=1e+02 Score=19.69 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=12.0
Q ss_pred ceEEEEeCCCCCCCCC
Q 040434 9 RLMIVSDLDLTMVDHD 24 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~ 24 (141)
.--|+++=|||.+++.
T Consensus 38 ~~~l~L~eDGT~VddE 53 (74)
T smart00266 38 PVTLVLEEDGTIVDDE 53 (74)
T ss_pred CcEEEEecCCcEEccH
Confidence 4557888899988763
No 376
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=22.37 E-value=2.7e+02 Score=23.05 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=31.3
Q ss_pred ceEEEEeCCCCCCCCC--CCChHHHHHHHHHHHHHhCCCceEEEEcC
Q 040434 9 RLMIVSDLDLTMVDHD--DGENLSLLRFNALWEAHYRQDSLLVFSTG 53 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~--~~~~~~~~~l~~~l~~~~~~g~~~viaTG 53 (141)
.+.|+.=+=|+.+.+. ..+...+..+.+.+.+++++|..+++++|
T Consensus 5 ~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsS 51 (368)
T PRK13402 5 WKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSS 51 (368)
T ss_pred CcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4677888888877653 22335566666666677788999888877
No 377
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=22.28 E-value=2.7e+02 Score=22.05 Aligned_cols=55 Identities=16% Similarity=0.025 Sum_probs=33.6
Q ss_pred ceEEEEeCCCCCCCCC-C--CChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 9 RLMIVSDLDLTMVDHD-D--GENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~-~--~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
.|.|+.=+=+.++.+. + .....+..+.+.+.+++++|..++++|.=....-...+
T Consensus 8 ~~~iVvKiGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l 65 (284)
T cd04256 8 AKRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRL 65 (284)
T ss_pred CCEEEEEeCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHh
Confidence 4567778866666543 2 22356666766667777889999955544444444444
No 378
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=22.28 E-value=2.3e+02 Score=19.74 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=26.5
Q ss_pred EEEEeCCCCCCCCCC---CChHHHHHHHHHHHHHhCCCceEEEEc
Q 040434 11 MIVSDLDLTMVDHDD---GENLSLLRFNALWEAHYRQDSLLVFST 52 (141)
Q Consensus 11 li~~DlDGTLl~~~~---~~~~~~~~l~~~l~~~~~~g~~~viaT 52 (141)
||+.|+=.=++.... .....++++.++++..+++|+++++.+
T Consensus 2 LlviD~Q~~f~~~~~~~~~~~~~v~~i~~li~~~r~~~~~Vi~~~ 46 (155)
T cd01014 2 LLVIDVQNGYFDGGLPPLNNEAALENIAALIAAARAAGIPVIHVR 46 (155)
T ss_pred EEEEeCchhhhCCCCCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 566676554443221 123566777777777778899888775
No 379
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=22.25 E-value=2.8e+02 Score=20.97 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=22.7
Q ss_pred HhCCCceEEEEcC---CC--------H---HHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 41 HYRQDSLLVFSTG---RS--------P---TIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 41 ~~~~g~~~viaTG---R~--------~---~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
+.++|+.|=|.++ ++ + ..+.++.+.++. | +|.+.+|.-
T Consensus 127 a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~--p--iiisSdAh~ 178 (237)
T PRK00912 127 AARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDF--P--LVLTSGAMS 178 (237)
T ss_pred HHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCC--C--EEEeCCCCc
Confidence 4568999999887 21 1 345566676664 3 444456543
No 380
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=21.97 E-value=1.3e+02 Score=20.22 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=17.7
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
+.++++|.+++..|+..-+.+.+..
T Consensus 68 ~~a~~~g~~vi~iT~~~~s~la~~a 92 (120)
T cd05710 68 KFAKEKGATVIGLTDDEDSPLAKLA 92 (120)
T ss_pred HHHHHcCCeEEEEECCCCCcHHHhC
Confidence 3445678999999988877665533
No 381
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=21.91 E-value=1.5e+02 Score=23.60 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=28.8
Q ss_pred EEEEeCCCCCCCCCCCChHHHHHHHHHHHHHh-CCCceEEEEcCC-----CHHH-HHHHHHhCCC
Q 040434 11 MIVSDLDLTMVDHDDGENLSLLRFNALWEAHY-RQDSLLVFSTGR-----SPTI-YKQLRKEKPL 68 (141)
Q Consensus 11 li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~-~~g~~~viaTGR-----~~~~-~~~~~~~~~l 68 (141)
--++|..|||-... ..+|+..++.+. +.+..++++|=. ++++ +.++++.+.+
T Consensus 34 ~~V~D~t~~Ls~~e------~~~Leq~l~~L~~kt~~QiaVv~vpSt~g~~IE~ya~rlfd~W~l 92 (271)
T COG1512 34 QRVTDLTGTLSAAE------RGALEQQLADLEQKTGAQIAVVTVPSTGGETIEQYATRLFDKWKL 92 (271)
T ss_pred ceeeeccccCChhh------HHHHHHHHHHHHhccCCeEEEEEecCCCCCCHHHHHHHHHHhcCC
Confidence 36899999997764 223333333332 466666666533 3333 4445666554
No 382
>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known. There are two characteristic sequence motifs, GGWW and TGR.
Probab=21.67 E-value=2.2e+02 Score=21.59 Aligned_cols=38 Identities=24% Similarity=0.217 Sum_probs=24.1
Q ss_pred HhCCCceEEEEcCCCHHH----HHHHHHhCCCCCCCEEEecCCe
Q 040434 41 HYRQDSLLVFSTGRSPTI----YKQLRKEKPLLTPDITIMSVGT 80 (141)
Q Consensus 41 ~~~~g~~~viaTGR~~~~----~~~~~~~~~l~~p~~~I~~nGa 80 (141)
..+.+...|+.|||.-.. +.+++...+|. +| +||-...
T Consensus 67 ~~~~dtltVLLTGR~e~~F~~lI~~ml~s~~L~-Fd-~v~LKp~ 108 (197)
T PF10307_consen 67 MQDPDTLTVLLTGRRESKFSSLIERMLASKGLE-FD-AVCLKPE 108 (197)
T ss_pred hcCCCeeEEEEeCCCchhHHHHHHHHHhcCCCC-cc-EEEeCcc
Confidence 456899999999999644 44455555654 44 4443333
No 383
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=21.57 E-value=1.9e+02 Score=21.63 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=30.8
Q ss_pred CceEEEEeCCCCCCCCCCCChH-HHHHHH------H-HHHHHhCCCceEEEEcCCCHHHHHHHHH
Q 040434 8 ARLMIVSDLDLTMVDHDDGENL-SLLRFN------A-LWEAHYRQDSLLVFSTGRSPTIYKQLRK 64 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~~~~~~~-~~~~l~------~-~l~~~~~~g~~~viaTGR~~~~~~~~~~ 64 (141)
...++++|.||-+-.+....+. +...+. . ....+.+.|+.+.++.|+....+...+.
T Consensus 130 ~~Li~ltdVdGVy~~da~~i~~i~~~e~~~~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~ 194 (203)
T cd04240 130 KRLVIVTDVDGIYEKDGKLVNEIAAAELLGETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALR 194 (203)
T ss_pred CEEEEEeCCccccCCCCcCccccCHHHhCCCCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHC
Confidence 4467789999987532211000 000100 0 0011235678888888888777777664
No 384
>PRK12352 putative carbamate kinase; Reviewed
Probab=21.53 E-value=1.7e+02 Score=23.70 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=13.8
Q ss_pred CCceEEEEeCCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVDH 23 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~~ 23 (141)
..+.+++||.||-+.+.
T Consensus 229 AdkLI~LTDV~GV~~d~ 245 (316)
T PRK12352 229 ADILVITTGVEKVCIHF 245 (316)
T ss_pred CCEEEEEeCchhhccCC
Confidence 45678999999999864
No 385
>PLN03211 ABC transporter G-25; Provisional
Probab=21.41 E-value=2.4e+02 Score=25.20 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEEC
Q 040434 28 NLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEIVYG 85 (141)
Q Consensus 28 ~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I~~~ 85 (141)
..+...+.++|.++.++|..++++|=+.-..+.++..+ .++-.+|..++.+
T Consensus 239 ~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~-------iilL~~G~iv~~G 289 (659)
T PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS-------VLVLSEGRCLFFG 289 (659)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce-------EEEecCCcEEEEC
Confidence 35666777777766667888888777765556655532 4566788887765
No 386
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=21.20 E-value=1.9e+02 Score=27.18 Aligned_cols=45 Identities=22% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCCCCCCCE-EEecCCeEEE
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKPLLTPDI-TIMSVGTEIV 83 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~~p~~-~I~~nGa~I~ 83 (141)
+.++++|+.+-.+||-+...++.+..+.|+-.|+. +++--|.+..
T Consensus 657 ~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG~eFr 702 (1034)
T KOG0204|consen 657 QLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEGKEFR 702 (1034)
T ss_pred HHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecchhhh
Confidence 44567899999999999999999999998755531 3444454443
No 387
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=20.89 E-value=2.1e+02 Score=17.69 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=5.2
Q ss_pred ceEEEEcCCC
Q 040434 46 SLLVFSTGRS 55 (141)
Q Consensus 46 ~~~viaTGR~ 55 (141)
+.|.+|++..
T Consensus 3 V~IeYC~~C~ 12 (76)
T PF10262_consen 3 VTIEYCTSCG 12 (76)
T ss_dssp EEEEEETTTT
T ss_pred EEEEECCCCC
Confidence 3455555554
No 388
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=20.85 E-value=25 Score=25.66 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=12.1
Q ss_pred CCceEEEEeCCCCCCC
Q 040434 7 SARLMIVSDLDLTMVD 22 (141)
Q Consensus 7 ~~~~li~~DlDGTLl~ 22 (141)
|.++.|+.|||-||-+
T Consensus 1 m~kk~iaIDmD~vLad 16 (180)
T COG4502 1 MNKKTIAIDMDTVLAD 16 (180)
T ss_pred CCCceEEeeHHHHHHH
Confidence 4568899999977754
No 389
>PLN02591 tryptophan synthase
Probab=20.84 E-value=2.1e+02 Score=22.30 Aligned_cols=63 Identities=13% Similarity=-0.005 Sum_probs=34.2
Q ss_pred EeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEc-CCCH-HHHHHHHHhCCCCCCCEEEecCCeEEE
Q 040434 14 SDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFST-GRSP-TIYKQLRKEKPLLTPDITIMSVGTEIV 83 (141)
Q Consensus 14 ~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaT-GR~~-~~~~~~~~~~~l~~p~~~I~~nGa~I~ 83 (141)
..+||-++++-.. +....+. ..+.+.|+.+++.- -.+. ..++.+.+.- ..+-|+|+.+|..-.
T Consensus 105 aGv~GviipDLP~--ee~~~~~---~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~Vs~~GvTG~ 169 (250)
T PLN02591 105 AGVHGLVVPDLPL--EETEALR---AEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYLVSSTGVTGA 169 (250)
T ss_pred cCCCEEEeCCCCH--HHHHHHH---HHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEEeeCCCCcCC
Confidence 3567777775321 2233333 34456786666444 4443 3456665542 334578888887643
No 390
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=20.80 E-value=1.5e+02 Score=20.93 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 40 AHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 40 ~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
++.+.|+.+.+..|.+...+..+.++++
T Consensus 61 ~L~~~g~~L~v~~g~~~~~l~~l~~~~~ 88 (165)
T PF00875_consen 61 SLRKLGIPLLVLRGDPEEVLPELAKEYG 88 (165)
T ss_dssp HHHHTTS-EEEEESSHHHHHHHHHHHHT
T ss_pred HHHhcCcceEEEecchHHHHHHHHHhcC
Confidence 3456899999999999999999998765
No 391
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=20.77 E-value=1.3e+02 Score=21.47 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=19.9
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHH
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLR 63 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~ 63 (141)
+.++++|++++..|+.+-+.+.+..
T Consensus 93 ~~ak~~g~~ii~IT~~~~s~la~~a 117 (179)
T TIGR03127 93 KKAKEIGATVAAITTNPESTLGKLA 117 (179)
T ss_pred HHHHHCCCeEEEEECCCCCchHHhC
Confidence 3456789999999999988877754
No 392
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=20.53 E-value=1.3e+02 Score=19.40 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=11.9
Q ss_pred CceEEEEeCCCCCCCC
Q 040434 8 ARLMIVSDLDLTMVDH 23 (141)
Q Consensus 8 ~~~li~~DlDGTLl~~ 23 (141)
..--|+.+-|||.+++
T Consensus 39 ~~~~lvL~eDGTeVdd 54 (78)
T cd01615 39 APVTLVLEEDGTEVDD 54 (78)
T ss_pred CCeEEEEeCCCcEEcc
Confidence 3455888888988876
No 393
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.28 E-value=2.7e+02 Score=18.41 Aligned_cols=27 Identities=15% Similarity=0.137 Sum_probs=18.3
Q ss_pred HHHhCCCceEEEEcCCCHHHHHHHHHhCC
Q 040434 39 EAHYRQDSLLVFSTGRSPTIYKQLRKEKP 67 (141)
Q Consensus 39 ~~~~~~g~~~viaTGR~~~~~~~~~~~~~ 67 (141)
+.++++|++++..|+.+ .+.++..+.+
T Consensus 64 ~~a~~~g~~iI~IT~~~--~l~~~~~~~~ 90 (119)
T cd05017 64 EQAKERGAKIVAITSGG--KLLEMAREHG 90 (119)
T ss_pred HHHHHCCCEEEEEeCCc--hHHHHHHHcC
Confidence 34457899999999876 3556655443
No 394
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=20.26 E-value=1.5e+02 Score=17.60 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=20.8
Q ss_pred CceEEEEcCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Q 040434 45 DSLLVFSTGRSPTIYKQLRKEKPLLTPDITIMSVGTEI 82 (141)
Q Consensus 45 g~~~viaTGR~~~~~~~~~~~~~l~~p~~~I~~nGa~I 82 (141)
|-.+-+..|-+ +..+++.+++.....+|.-||..|
T Consensus 5 g~~~~~~~~~t---v~~ll~~l~~~~~~v~v~vN~~iv 39 (64)
T TIGR01683 5 GEPVEVEDGLT---LAALLESLGLDPRRVAVAVNGEIV 39 (64)
T ss_pred CeEEEcCCCCc---HHHHHHHcCCCCCeEEEEECCEEc
Confidence 44444444433 555666666654456777888877
No 395
>smart00642 Aamy Alpha-amylase domain.
Probab=20.18 E-value=99 Score=22.36 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCCceEEE
Q 040434 30 SLLRFNALWEAHYRQDSLLVF 50 (141)
Q Consensus 30 ~~~~l~~~l~~~~~~g~~~vi 50 (141)
+.+.|++++++++++|+.+++
T Consensus 68 t~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 68 TMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred CHHHHHHHHHHHHHCCCEEEE
Confidence 456777777888899999885
No 396
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=20.16 E-value=3.7e+02 Score=20.92 Aligned_cols=56 Identities=9% Similarity=-0.061 Sum_probs=33.8
Q ss_pred ceEEEEeCCCCCCCCCCCChHHHHHHHHHHHHHhCCCceEEEEcCCCHHHHHHHHHhCCCC
Q 040434 9 RLMIVSDLDLTMVDHDDGENLSLLRFNALWEAHYRQDSLLVFSTGRSPTIYKQLRKEKPLL 69 (141)
Q Consensus 9 ~~li~~DlDGTLl~~~~~~~~~~~~l~~~l~~~~~~g~~~viaTGR~~~~~~~~~~~~~l~ 69 (141)
.++++.=|.|+.+.+.. ..+.+.+.+..+++.|.+++++-|-. ..+.+.++.+++.
T Consensus 14 ~~~~ViKlGGs~i~~~~----~~~~~~~~i~~l~~~g~~~ViVhG~g-~~~~~~l~~~g~~ 69 (279)
T cd04250 14 GKTVVIKYGGNAMKDEE----LKESFARDIVLLKYVGINPVVVHGGG-PEINEMLKKLGIE 69 (279)
T ss_pred CCEEEEEEChHHhcCcc----HHHHHHHHHHHHHHCCCCEEEEcCCc-HHHHHHHHHCCCC
Confidence 36788899999997642 22233333333445677776666653 3566667676654
No 397
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=20.09 E-value=1.5e+02 Score=22.77 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCceEEEEcCCCHHHH
Q 040434 31 LLRFNALWEAHYRQDSLLVFSTGRSPTIY 59 (141)
Q Consensus 31 ~~~l~~~l~~~~~~g~~~viaTGR~~~~~ 59 (141)
...+.+.+..+.++|+.||++.|..-...
T Consensus 131 ~~~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 131 YNAYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred hHHHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 34555555556678999999999986543
No 398
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=20.04 E-value=1.6e+02 Score=22.18 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=24.5
Q ss_pred EEEecCCeEEEECCCccccccHHHHhccCCChHHHHHHHhcCCCC
Q 040434 73 ITIMSVGTEIVYGESMVHDDGWENYLNHKWDRGIVLEETAKFPEL 117 (141)
Q Consensus 73 ~~I~~nGa~I~~~~~~~~d~~~~~~i~~~~~~~~v~~il~~~~~l 117 (141)
++|+.||..|.+-. +...+++..+.+-++.+||+
T Consensus 163 p~~Td~gn~i~D~~-----------~~~~~~~~~l~~~l~~i~GV 196 (213)
T cd01398 163 PVVTDNGNYILDVH-----------FGTIEDPEALEKELKSIPGV 196 (213)
T ss_pred cEECCCCCEEEEec-----------CCCCCCHHHHHHHHhcCCCe
Confidence 58999999998732 12224677888888888875
Done!