Query 040435
Match_columns 1991
No_of_seqs 1201 out of 6053
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02910 polygalacturonate 4-a 100.0 1E-149 3E-154 1347.3 46.1 631 46-677 23-656 (657)
2 PLN02829 Probable galacturonos 100.0 2E-110 5E-115 1010.9 33.3 461 212-676 177-637 (639)
3 PLN03077 Protein ECB2; Provisi 100.0 4E-105 8E-110 1101.9 76.3 804 667-1491 47-853 (857)
4 PLN02769 Probable galacturonos 100.0 5E-107 1E-111 992.5 32.3 471 192-676 155-628 (629)
5 PLN02742 Probable galacturonos 100.0 1E-105 3E-110 964.9 35.4 461 212-676 68-533 (534)
6 TIGR00917 2A060601 Niemann-Pic 100.0 2E-100 4E-105 1045.2 46.4 554 1410-1991 1-579 (1204)
7 PLN02718 Probable galacturonos 100.0 2E-97 4E-102 904.6 32.6 440 213-677 160-602 (603)
8 PLN02523 galacturonosyltransfe 100.0 7.8E-95 1.7E-99 870.3 34.7 462 214-677 78-558 (559)
9 PLN02870 Probable galacturonos 100.0 2.9E-93 6.3E-98 855.1 27.5 412 259-677 103-531 (533)
10 PLN02867 Probable galacturonos 100.0 3.8E-91 8.2E-96 842.0 27.3 423 254-677 96-534 (535)
11 PLN02659 Probable galacturonos 100.0 5.9E-91 1.3E-95 835.4 25.2 401 276-677 114-532 (534)
12 KOG1933 Cholesterol transport 100.0 7.3E-85 1.6E-89 847.9 32.7 538 1408-1991 1-556 (1201)
13 PLN03081 pentatricopeptide (PP 100.0 3.2E-77 7E-82 806.0 58.5 602 868-1492 83-692 (697)
14 PLN03077 Protein ECB2; Provisi 100.0 1.2E-73 2.6E-78 788.8 60.1 612 768-1392 47-670 (857)
15 PLN03218 maturation of RBCL 1; 100.0 6.3E-60 1.4E-64 639.1 58.8 526 737-1282 366-916 (1060)
16 PLN03081 pentatricopeptide (PP 100.0 3.9E-60 8.4E-65 639.9 55.4 467 769-1238 84-555 (697)
17 PLN03218 maturation of RBCL 1; 100.0 3.2E-55 6.9E-60 593.4 63.0 529 705-1248 368-916 (1060)
18 cd06429 GT8_like_1 GT8_like_1 100.0 6.3E-47 1.4E-51 439.7 19.1 255 367-665 1-257 (257)
19 TIGR00918 2A060602 The Eukaryo 100.0 1.9E-40 4.2E-45 444.0 15.9 267 1716-1991 38-406 (1145)
20 PRK15171 lipopolysaccharide 1, 100.0 1.6E-36 3.6E-41 368.0 16.0 253 364-666 23-288 (334)
21 cd06431 GT8_LARGE_C LARGE cata 100.0 6E-35 1.3E-39 344.8 16.7 260 369-673 5-277 (280)
22 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-29 6.8E-34 350.1 75.9 668 659-1342 215-898 (899)
23 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-28 2.4E-33 344.6 77.2 664 663-1345 151-867 (899)
24 COG1442 RfaJ Lipopolysaccharid 100.0 6.5E-33 1.4E-37 327.6 17.1 245 366-657 2-253 (325)
25 cd00505 Glyco_transf_8 Members 100.0 6.1E-32 1.3E-36 318.4 18.3 236 367-649 1-245 (246)
26 cd04194 GT8_A4GalT_like A4GalT 100.0 1.4E-31 3E-36 316.5 15.5 237 367-649 1-247 (248)
27 cd06430 GT8_like_2 GT8_like_2 100.0 8.4E-31 1.8E-35 305.7 15.1 235 367-646 1-257 (304)
28 PF01501 Glyco_transf_8: Glyco 100.0 9.7E-29 2.1E-33 292.8 10.9 245 368-651 1-249 (250)
29 cd06432 GT8_HUGT1_C_like The C 99.9 7.8E-28 1.7E-32 280.6 15.4 234 367-644 1-240 (248)
30 PRK11447 cellulose synthase su 99.9 3E-18 6.4E-23 243.6 71.4 605 722-1347 44-744 (1157)
31 PRK11447 cellulose synthase su 99.9 2.6E-18 5.7E-23 244.2 63.8 586 746-1344 33-700 (1157)
32 PRK09782 bacteriophage N4 rece 99.9 2.1E-16 4.5E-21 215.0 66.3 624 682-1339 55-735 (987)
33 KOG1934 Predicted membrane pro 99.9 3.1E-21 6.7E-26 253.6 16.6 250 1716-1991 4-262 (868)
34 PRK09782 bacteriophage N4 rece 99.8 2.5E-15 5.4E-20 204.6 67.0 557 753-1341 56-703 (987)
35 cd02537 GT8_Glycogenin Glycoge 99.8 3.4E-20 7.4E-25 217.2 15.1 142 478-653 73-217 (240)
36 PLN00176 galactinol synthase 99.8 2E-19 4.3E-24 214.2 15.0 158 482-651 100-269 (333)
37 KOG4626 O-linked N-acetylgluco 99.7 6.8E-15 1.5E-19 176.5 34.0 441 878-1333 54-508 (966)
38 PRK11788 tetratricopeptide rep 99.7 3.4E-14 7.4E-19 180.1 32.8 295 1053-1353 44-356 (389)
39 PRK11788 tetratricopeptide rep 99.7 2.5E-14 5.4E-19 181.3 30.2 295 882-1212 45-354 (389)
40 PF02460 Patched: Patched fami 99.7 2.5E-16 5.4E-21 215.7 12.2 213 1750-1991 1-223 (798)
41 KOG4626 O-linked N-acetylgluco 99.6 2.4E-13 5.2E-18 163.4 31.1 412 914-1339 54-480 (966)
42 PRK10049 pgaA outer membrane p 99.6 6.5E-12 1.4E-16 171.7 47.6 90 1250-1339 362-451 (765)
43 cd06914 GT8_GNT1 GNT1 is a fun 99.6 3.6E-15 7.8E-20 174.3 13.6 142 478-653 76-243 (278)
44 TIGR00990 3a0801s09 mitochondr 99.6 1.1E-11 2.4E-16 166.4 47.1 414 874-1340 129-567 (615)
45 PRK10049 pgaA outer membrane p 99.6 7E-12 1.5E-16 171.4 44.1 416 892-1317 2-463 (765)
46 KOG2002 TPR-containing nuclear 99.6 6.4E-11 1.4E-15 151.0 47.9 560 687-1325 146-760 (1018)
47 PRK15174 Vi polysaccharide exp 99.6 8.9E-12 1.9E-16 167.0 42.1 329 977-1315 45-386 (656)
48 TIGR00990 3a0801s09 mitochondr 99.6 4.3E-11 9.3E-16 160.7 48.5 421 849-1316 134-577 (615)
49 KOG4422 Uncharacterized conser 99.6 8.6E-11 1.9E-15 137.0 42.6 328 772-1141 116-464 (625)
50 PRK15174 Vi polysaccharide exp 99.5 1.1E-11 2.5E-16 165.9 38.7 322 1012-1342 45-379 (656)
51 PRK14574 hmsH outer membrane p 99.5 1.1E-10 2.4E-15 156.8 47.7 441 845-1316 38-519 (822)
52 KOG2002 TPR-containing nuclear 99.5 1E-09 2.3E-14 140.2 52.2 546 788-1358 146-755 (1018)
53 PRK14574 hmsH outer membrane p 99.5 1.6E-10 3.4E-15 155.2 45.1 435 881-1343 43-512 (822)
54 KOG4422 Uncharacterized conser 99.5 3.6E-10 7.8E-15 131.9 37.6 322 674-1041 119-465 (625)
55 KOG1879 UDP-glucose:glycoprote 99.5 1E-13 2.2E-18 178.6 9.4 255 362-663 1177-1442(1470)
56 KOG4318 Bicoid mRNA stability 99.4 3.5E-10 7.6E-15 142.3 38.4 144 1146-1294 492-643 (1088)
57 KOG0495 HAT repeat protein [RN 99.4 1.5E-07 3.2E-12 115.6 57.4 507 793-1358 367-892 (913)
58 KOG2076 RNA polymerase III tra 99.4 1.4E-07 3E-12 120.9 57.3 615 683-1338 151-889 (895)
59 KOG1935 Membrane protein Patch 99.4 2.8E-13 6.1E-18 167.4 6.4 262 1716-1987 54-415 (1143)
60 KOG2076 RNA polymerase III tra 99.4 5.1E-08 1.1E-12 124.7 50.5 557 750-1328 149-787 (895)
61 KOG4318 Bicoid mRNA stability 99.3 5.7E-09 1.2E-13 131.7 38.8 534 793-1354 11-603 (1088)
62 KOG0495 HAT repeat protein [RN 99.3 4.4E-07 9.5E-12 111.6 50.6 399 920-1330 388-802 (913)
63 PF13429 TPR_15: Tetratricopep 99.2 5E-11 1.1E-15 144.1 10.8 252 1084-1340 17-273 (280)
64 KOG2003 TPR repeat-containing 99.1 7.5E-07 1.6E-11 104.6 37.9 274 1052-1332 427-711 (840)
65 KOG1915 Cell cycle control pro 99.1 8.4E-06 1.8E-10 97.4 45.6 475 855-1341 87-622 (677)
66 KOG1126 DNA-binding cell divis 99.0 1.9E-08 4E-13 125.4 22.8 201 1074-1315 420-625 (638)
67 KOG1155 Anaphase-promoting com 99.0 2.8E-07 6E-12 110.0 31.2 187 1146-1336 331-528 (559)
68 PRK10747 putative protoheme IX 99.0 2.1E-07 4.5E-12 118.2 32.6 286 987-1311 97-391 (398)
69 KOG2047 mRNA splicing factor [ 99.0 3.1E-05 6.6E-10 96.0 48.2 526 741-1311 102-720 (835)
70 PRK10747 putative protoheme IX 99.0 1.2E-07 2.6E-12 120.3 29.3 273 1057-1339 97-385 (398)
71 KOG2003 TPR repeat-containing 99.0 7.4E-07 1.6E-11 104.7 32.7 159 1144-1307 557-719 (840)
72 TIGR02521 type_IV_pilW type IV 99.0 6.5E-08 1.4E-12 112.1 24.3 199 1144-1343 30-231 (234)
73 KOG1126 DNA-binding cell divis 99.0 3.3E-08 7.2E-13 123.2 21.3 274 1059-1342 334-618 (638)
74 KOG1915 Cell cycle control pro 98.9 2.1E-05 4.6E-10 94.1 42.0 433 882-1326 83-551 (677)
75 KOG1155 Anaphase-promoting com 98.9 3.5E-06 7.5E-11 100.9 35.0 250 1084-1339 236-490 (559)
76 PF13429 TPR_15: Tetratricopep 98.9 4.1E-09 8.9E-14 127.5 11.0 254 1049-1310 13-277 (280)
77 TIGR00540 hemY_coli hemY prote 98.9 8.7E-07 1.9E-11 113.1 32.6 290 987-1309 97-398 (409)
78 TIGR00540 hemY_coli hemY prote 98.8 1.3E-06 2.9E-11 111.5 29.9 277 1057-1340 97-395 (409)
79 PF13041 PPR_2: PPR repeat fam 98.8 9E-09 2E-13 89.7 6.8 50 1174-1223 1-50 (50)
80 KOG0547 Translocase of outer m 98.8 1E-05 2.2E-10 97.6 33.6 210 1123-1339 339-561 (606)
81 PF13041 PPR_2: PPR repeat fam 98.8 1.3E-08 2.8E-13 88.7 6.6 50 770-819 1-50 (50)
82 KOG2047 mRNA splicing factor [ 98.7 0.00026 5.7E-09 88.0 44.3 519 756-1340 90-683 (835)
83 COG3071 HemY Uncharacterized e 98.7 1.2E-05 2.5E-10 95.8 31.8 287 987-1309 97-389 (400)
84 KOG3616 Selective LIM binding 98.7 0.0001 2.2E-09 91.3 40.1 481 753-1329 456-953 (1636)
85 KOG1173 Anaphase-promoting com 98.7 3.8E-05 8.3E-10 94.6 35.0 193 1142-1338 309-512 (611)
86 KOG2376 Signal recognition par 98.7 0.00013 2.8E-09 90.4 38.3 448 880-1358 20-529 (652)
87 KOG4162 Predicted calmodulin-b 98.6 0.00019 4.1E-09 91.5 39.8 304 990-1315 460-788 (799)
88 KOG1173 Anaphase-promoting com 98.6 6.3E-05 1.4E-09 92.8 34.5 267 1054-1324 254-532 (611)
89 KOG1840 Kinesin light chain [C 98.6 6.3E-06 1.4E-10 104.7 26.8 231 1111-1341 200-476 (508)
90 PRK12370 invasion protein regu 98.6 4.8E-06 1E-10 110.4 27.1 208 1125-1339 319-531 (553)
91 COG3071 HemY Uncharacterized e 98.6 2.1E-05 4.6E-10 93.6 29.0 276 1057-1340 97-386 (400)
92 TIGR02521 type_IV_pilW type IV 98.6 7E-06 1.5E-10 95.0 25.3 199 1075-1312 31-234 (234)
93 KOG1174 Anaphase-promoting com 98.6 0.00015 3.2E-09 86.0 34.0 303 1007-1316 192-506 (564)
94 KOG0547 Translocase of outer m 98.6 1.4E-05 3E-10 96.4 25.4 170 1154-1327 335-514 (606)
95 KOG3616 Selective LIM binding 98.6 0.0028 6E-08 79.1 45.1 225 746-1000 620-850 (1636)
96 COG2956 Predicted N-acetylgluc 98.5 2.7E-05 5.9E-10 89.9 26.4 317 987-1370 48-373 (389)
97 PRK12370 invasion protein regu 98.5 5.5E-06 1.2E-10 109.8 24.6 178 1158-1342 317-501 (553)
98 KOG0985 Vesicle coat protein c 98.5 0.0034 7.3E-08 81.4 46.8 139 1175-1336 1103-1241(1666)
99 KOG1156 N-terminal acetyltrans 98.5 0.0085 1.8E-07 75.7 49.6 586 708-1339 9-683 (700)
100 KOG0985 Vesicle coat protein c 98.5 0.011 2.5E-07 76.8 51.0 519 744-1300 609-1268(1666)
101 KOG4162 Predicted calmodulin-b 98.5 0.003 6.6E-08 81.0 43.8 394 937-1340 317-779 (799)
102 COG2956 Predicted N-acetylgluc 98.4 6.1E-05 1.3E-09 87.1 25.6 249 1088-1342 48-310 (389)
103 PRK11189 lipoprotein NlpI; Pro 98.4 2.3E-05 5E-10 95.6 23.6 184 1147-1339 66-260 (296)
104 KOG3785 Uncharacterized conser 98.4 0.00031 6.7E-09 81.5 30.6 408 855-1292 71-505 (557)
105 KOG1840 Kinesin light chain [C 98.4 3.7E-05 7.9E-10 97.9 25.8 234 1045-1309 200-478 (508)
106 KOG2376 Signal recognition par 98.4 0.0022 4.7E-08 80.0 38.9 206 781-1004 21-254 (652)
107 KOG3617 WD40 and TPR repeat-co 98.3 0.0061 1.3E-07 77.6 40.2 152 920-1099 924-1104(1416)
108 KOG1156 N-terminal acetyltrans 98.3 0.0092 2E-07 75.4 41.7 455 819-1336 19-503 (700)
109 PRK11189 lipoprotein NlpI; Pro 98.3 0.00012 2.5E-09 89.4 25.7 191 1115-1314 69-269 (296)
110 KOG1127 TPR repeat-containing 98.3 0.0064 1.4E-07 79.6 40.3 631 667-1328 488-1193(1238)
111 KOG1127 TPR repeat-containing 98.3 0.0028 6.1E-08 82.7 36.8 537 774-1329 494-1086(1238)
112 KOG3617 WD40 and TPR repeat-co 98.2 0.0043 9.3E-08 78.9 37.1 427 740-1275 725-1173(1416)
113 KOG3785 Uncharacterized conser 98.2 0.0044 9.5E-08 72.4 34.4 195 1150-1351 290-495 (557)
114 COG3063 PilF Tfp pilus assembl 98.2 6.6E-05 1.4E-09 83.7 18.8 164 1178-1345 37-203 (250)
115 KOG1129 TPR repeat-containing 98.2 2E-05 4.3E-10 90.5 15.0 226 1048-1343 227-457 (478)
116 KOG1129 TPR repeat-containing 98.2 8.6E-05 1.9E-09 85.4 18.6 192 1144-1340 222-420 (478)
117 PF12569 NARP1: NMDA receptor- 98.2 0.00052 1.1E-08 88.6 28.2 282 1053-1341 13-331 (517)
118 KOG1914 mRNA cleavage and poly 98.1 0.014 3E-07 72.3 37.1 147 1092-1240 348-501 (656)
119 PF04733 Coatomer_E: Coatomer 98.1 0.0001 2.2E-09 89.0 19.4 158 1152-1316 109-271 (290)
120 KOG0548 Molecular co-chaperone 98.0 0.002 4.3E-08 79.9 28.3 211 1116-1340 230-451 (539)
121 PRK04841 transcriptional regul 98.0 0.03 6.5E-07 79.6 45.2 192 1149-1340 535-756 (903)
122 COG3063 PilF Tfp pilus assembl 98.0 0.00074 1.6E-08 75.6 22.1 193 1120-1316 45-242 (250)
123 PF04733 Coatomer_E: Coatomer 98.0 8.8E-05 1.9E-09 89.5 16.4 150 1185-1343 111-264 (290)
124 KOG1174 Anaphase-promoting com 98.0 0.0015 3.2E-08 77.8 25.6 197 1138-1339 225-462 (564)
125 PF12569 NARP1: NMDA receptor- 98.0 0.0012 2.6E-08 85.4 26.1 258 1083-1346 12-293 (517)
126 PRK15359 type III secretion sy 98.0 0.00014 3E-09 78.8 14.9 124 1197-1327 14-138 (144)
127 KOG1125 TPR repeat-containing 97.9 0.00013 2.8E-09 90.6 14.9 190 1147-1338 321-521 (579)
128 TIGR03302 OM_YfiO outer membra 97.9 0.00082 1.8E-08 79.1 21.0 178 1145-1344 33-232 (235)
129 cd05804 StaR_like StaR_like; a 97.8 0.0083 1.8E-07 75.3 30.4 252 1084-1340 52-332 (355)
130 PRK10370 formate-dependent nit 97.8 0.0012 2.5E-08 75.6 19.3 156 1152-1319 23-182 (198)
131 PLN02789 farnesyltranstransfer 97.8 0.0032 6.9E-08 77.2 24.0 170 1155-1328 81-268 (320)
132 PRK10370 formate-dependent nit 97.8 0.00089 1.9E-08 76.5 18.1 147 1183-1344 23-173 (198)
133 cd05804 StaR_like StaR_like; a 97.7 0.019 4.2E-07 71.9 31.5 193 1118-1311 122-337 (355)
134 PF12854 PPR_1: PPR repeat 97.7 5.2E-05 1.1E-09 60.1 4.6 33 1242-1274 2-34 (34)
135 KOG0548 Molecular co-chaperone 97.7 0.046 9.9E-07 68.3 31.9 166 1151-1328 304-473 (539)
136 KOG1128 Uncharacterized conser 97.7 0.00066 1.4E-08 86.3 16.6 225 1040-1313 394-619 (777)
137 PF12854 PPR_1: PPR repeat 97.7 4.4E-05 9.5E-10 60.6 4.1 34 937-970 1-34 (34)
138 PRK15359 type III secretion sy 97.6 0.00051 1.1E-08 74.4 12.7 105 1232-1341 14-118 (144)
139 PRK15179 Vi polysaccharide bio 97.6 0.0022 4.7E-08 86.0 21.1 123 1211-1336 86-209 (694)
140 KOG1070 rRNA processing protei 97.6 0.0062 1.4E-07 82.1 23.9 200 1075-1309 1458-1662(1710)
141 PLN02789 farnesyltranstransfer 97.5 0.0053 1.1E-07 75.3 21.3 176 1150-1329 42-231 (320)
142 PRK04841 transcriptional regul 97.5 0.076 1.6E-06 75.6 36.1 367 744-1140 344-761 (903)
143 KOG4340 Uncharacterized conser 97.5 0.01 2.2E-07 68.1 21.3 178 1159-1339 126-334 (459)
144 PRK15179 Vi polysaccharide bio 97.5 0.0058 1.3E-07 82.0 22.5 141 1174-1319 84-226 (694)
145 KOG1070 rRNA processing protei 97.5 0.0061 1.3E-07 82.2 21.6 200 1143-1346 1456-1665(1710)
146 KOG4340 Uncharacterized conser 97.4 0.055 1.2E-06 62.4 25.4 336 748-1101 17-372 (459)
147 TIGR03302 OM_YfiO outer membra 97.4 0.0044 9.5E-08 72.9 18.0 183 1109-1312 32-234 (235)
148 KOG2053 Mitochondrial inherita 97.4 0.76 1.6E-05 60.9 38.0 101 722-826 25-129 (932)
149 TIGR02552 LcrH_SycD type III s 97.4 0.0016 3.4E-08 69.4 12.1 89 1250-1338 20-108 (135)
150 KOG1128 Uncharacterized conser 97.3 0.0027 5.8E-08 81.0 15.4 185 1148-1342 427-614 (777)
151 TIGR00756 PPR pentatricopeptid 97.3 0.00033 7.2E-09 55.5 4.6 35 1177-1211 1-35 (35)
152 PRK14720 transcript cleavage f 97.3 0.02 4.4E-07 77.5 23.6 249 1043-1346 30-286 (906)
153 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.005 1.1E-07 76.9 16.7 123 1214-1341 172-294 (395)
154 COG5010 TadD Flp pilus assembl 97.3 0.0097 2.1E-07 68.3 17.3 123 1215-1339 70-192 (257)
155 KOG0624 dsRNA-activated protei 97.3 0.085 1.8E-06 62.0 24.7 282 1053-1341 47-367 (504)
156 TIGR00756 PPR pentatricopeptid 97.2 0.00036 7.8E-09 55.2 4.2 34 773-806 1-34 (35)
157 COG5010 TadD Flp pilus assembl 97.2 0.017 3.7E-07 66.4 18.8 151 1152-1306 73-227 (257)
158 COG4783 Putative Zn-dependent 97.2 0.017 3.6E-07 71.4 20.0 114 1185-1303 315-430 (484)
159 KOG0624 dsRNA-activated protei 97.2 0.23 5E-06 58.6 27.5 193 1120-1318 165-378 (504)
160 KOG3081 Vesicle coat complex C 97.2 0.093 2E-06 60.4 23.6 155 1153-1314 116-275 (299)
161 TIGR02552 LcrH_SycD type III s 97.2 0.0075 1.6E-07 64.2 14.7 115 1198-1317 5-121 (135)
162 PRK15363 pathogenicity island 97.1 0.003 6.5E-08 68.0 11.0 95 1246-1340 34-128 (157)
163 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.01 2.2E-07 74.2 16.4 127 1145-1275 169-296 (395)
164 KOG1125 TPR repeat-containing 97.0 0.039 8.4E-07 69.4 20.5 191 1044-1238 319-525 (579)
165 KOG0553 TPR repeat-containing 97.0 0.0033 7.1E-08 73.3 10.4 115 1194-1323 76-191 (304)
166 PF13812 PPR_3: Pentatricopept 97.0 0.00096 2.1E-08 52.7 4.4 34 772-805 1-34 (34)
167 PF13812 PPR_3: Pentatricopept 97.0 0.0011 2.3E-08 52.4 4.4 33 1177-1209 2-34 (34)
168 COG4783 Putative Zn-dependent 96.9 0.064 1.4E-06 66.6 21.0 113 1223-1338 318-431 (484)
169 KOG3060 Uncharacterized conser 96.8 0.076 1.6E-06 60.7 19.0 142 1184-1330 60-203 (289)
170 KOG3060 Uncharacterized conser 96.8 0.11 2.4E-06 59.4 20.3 159 1154-1317 61-227 (289)
171 PF04840 Vps16_C: Vps16, C-ter 96.8 0.63 1.4E-05 57.2 28.9 125 1148-1294 180-304 (319)
172 cd00189 TPR Tetratricopeptide 96.8 0.0085 1.8E-07 57.6 10.1 90 1250-1339 3-92 (100)
173 PLN03088 SGT1, suppressor of 96.8 0.015 3.2E-07 73.0 14.3 103 1219-1324 10-113 (356)
174 PF05843 Suf: Suppressor of fo 96.6 0.042 9E-07 66.6 16.6 137 1177-1316 2-142 (280)
175 TIGR00921 2A067 The (Largely A 96.6 0.012 2.7E-07 81.1 13.5 100 1720-1829 367-466 (719)
176 PRK02603 photosystem I assembl 96.5 0.043 9.3E-07 61.4 14.9 131 1175-1331 34-167 (172)
177 PF01535 PPR: PPR repeat; Int 96.5 0.0023 4.9E-08 49.3 3.2 31 1076-1106 1-31 (31)
178 PF01535 PPR: PPR repeat; Int 96.5 0.0025 5.4E-08 49.0 3.5 31 1177-1207 1-31 (31)
179 KOG1914 mRNA cleavage and poly 96.5 3.9 8.6E-05 51.7 38.6 205 1128-1335 311-530 (656)
180 KOG2041 WD40 repeat protein [G 96.5 4.2 9.1E-05 52.3 32.0 386 856-1309 678-1085(1189)
181 KOG2053 Mitochondrial inherita 96.5 5.8 0.00012 53.1 43.7 90 1250-1339 439-531 (932)
182 cd00189 TPR Tetratricopeptide 96.5 0.023 5E-07 54.4 10.8 90 1220-1312 9-99 (100)
183 KOG3081 Vesicle coat complex C 96.5 0.3 6.4E-06 56.5 20.4 142 1184-1335 116-261 (299)
184 PF13432 TPR_16: Tetratricopep 96.4 0.0074 1.6E-07 55.5 6.5 62 1254-1315 4-65 (65)
185 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.038 8.1E-07 57.0 12.6 104 1214-1317 5-112 (119)
186 PF09976 TPR_21: Tetratricopep 96.4 0.063 1.4E-06 58.2 14.5 126 1177-1307 13-144 (145)
187 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.031 6.7E-07 57.6 11.6 97 1248-1344 3-105 (119)
188 COG5597 Alpha-N-acetylglucosam 96.4 0.0018 3.9E-08 74.4 2.4 44 482-530 157-200 (368)
189 PRK14720 transcript cleavage f 96.4 0.72 1.6E-05 63.1 26.9 150 1112-1292 118-268 (906)
190 PF09976 TPR_21: Tetratricopep 96.4 0.11 2.4E-06 56.2 16.3 82 1253-1336 54-139 (145)
191 PLN03088 SGT1, suppressor of 96.3 0.017 3.6E-07 72.5 11.1 89 1254-1342 9-97 (356)
192 PRK10153 DNA-binding transcrip 96.3 0.093 2E-06 68.6 17.9 140 1174-1316 335-488 (517)
193 COG1033 Predicted exporters of 96.2 0.011 2.3E-07 78.6 8.7 96 1725-1830 2-97 (727)
194 KOG2280 Vacuolar assembly/sort 96.2 5.8 0.00012 52.1 31.7 109 1150-1274 689-797 (829)
195 PF14559 TPR_19: Tetratricopep 96.1 0.0081 1.8E-07 55.7 4.9 65 1258-1322 2-66 (68)
196 CHL00033 ycf3 photosystem I as 96.0 0.098 2.1E-06 58.2 13.7 80 1176-1258 35-117 (168)
197 COG1033 Predicted exporters of 95.9 0.02 4.3E-07 76.2 9.3 102 1718-1830 365-466 (727)
198 PRK10153 DNA-binding transcrip 95.9 0.086 1.9E-06 69.0 15.1 148 1205-1357 331-494 (517)
199 CHL00033 ycf3 photosystem I as 95.8 0.048 1.1E-06 60.6 10.4 91 1247-1337 35-135 (168)
200 PF13414 TPR_11: TPR repeat; P 95.7 0.028 6E-07 52.3 6.9 60 1280-1339 2-62 (69)
201 PF12895 Apc3: Anaphase-promot 95.7 0.0089 1.9E-07 58.2 3.6 78 1260-1338 2-81 (84)
202 KOG0553 TPR repeat-containing 95.6 0.03 6.6E-07 65.5 7.9 86 1254-1339 88-173 (304)
203 PF13414 TPR_11: TPR repeat; P 95.6 0.025 5.4E-07 52.6 5.8 67 1246-1312 2-69 (69)
204 PRK02603 photosystem I assembl 95.5 0.11 2.3E-06 58.2 11.9 85 1247-1331 35-122 (172)
205 COG4235 Cytochrome c biogenesi 95.5 0.066 1.4E-06 63.2 10.1 104 1243-1346 151-258 (287)
206 PF04840 Vps16_C: Vps16, C-ter 95.4 5.6 0.00012 49.0 26.8 107 946-1068 180-286 (319)
207 TIGR00833 actII Transport prot 95.3 0.049 1.1E-06 76.6 9.9 99 1722-1829 347-446 (910)
208 TIGR00921 2A067 The (Largely A 95.1 0.035 7.6E-07 76.7 7.8 86 1734-1829 2-87 (719)
209 PF13432 TPR_16: Tetratricopep 95.1 0.051 1.1E-06 49.9 6.4 56 1287-1342 3-58 (65)
210 PF13371 TPR_9: Tetratricopept 95.0 0.065 1.4E-06 50.4 7.0 66 1255-1320 3-68 (73)
211 KOG1538 Uncharacterized conser 95.0 2 4.4E-05 54.5 21.0 181 1034-1280 625-805 (1081)
212 PF13431 TPR_17: Tetratricopep 94.9 0.019 4.2E-07 45.5 2.4 32 1304-1335 2-33 (34)
213 KOG2041 WD40 repeat protein [G 94.8 18 0.00039 46.9 29.9 149 855-1031 748-900 (1189)
214 COG4700 Uncharacterized protei 94.8 0.39 8.5E-06 52.4 12.6 125 1207-1336 85-214 (251)
215 PF13281 DUF4071: Domain of un 94.8 1.5 3.3E-05 54.4 19.6 162 1150-1314 146-338 (374)
216 COG3898 Uncharacterized membra 94.8 14 0.0003 45.2 27.7 282 1057-1358 97-402 (531)
217 KOG2796 Uncharacterized conser 94.7 0.76 1.6E-05 52.8 14.9 240 667-916 65-327 (366)
218 PF12895 Apc3: Anaphase-promot 94.5 0.078 1.7E-06 51.6 6.2 80 1189-1272 2-83 (84)
219 PF14938 SNAP: Soluble NSF att 94.5 2 4.2E-05 52.3 19.6 124 1151-1274 120-264 (282)
220 PF07079 DUF1347: Protein of u 94.5 18 0.0004 45.2 43.4 445 820-1286 19-530 (549)
221 PF10037 MRP-S27: Mitochondria 94.4 0.62 1.3E-05 58.9 15.3 120 1105-1224 61-186 (429)
222 PF06239 ECSIT: Evolutionarily 94.4 0.26 5.7E-06 55.7 10.5 97 1165-1262 34-153 (228)
223 PF03024 Folate_rec: Folate re 94.4 0.012 2.5E-07 65.5 0.0 97 1442-1546 16-118 (167)
224 PLN03182 xyloglucan 6-xylosylt 94.3 0.44 9.5E-06 58.4 13.0 107 476-606 179-304 (429)
225 PRK15331 chaperone protein Sic 94.3 0.45 9.8E-06 51.8 11.9 91 1253-1343 43-133 (165)
226 COG0457 NrfG FOG: TPR repeat [ 94.2 11 0.00025 41.9 28.7 191 1145-1339 59-260 (291)
227 PF14938 SNAP: Soluble NSF att 94.1 2.6 5.6E-05 51.2 19.6 116 1183-1313 101-228 (282)
228 PF10037 MRP-S27: Mitochondria 94.1 0.5 1.1E-05 59.7 13.4 120 1004-1123 61-186 (429)
229 KOG2796 Uncharacterized conser 94.1 2 4.3E-05 49.6 16.5 171 1148-1318 139-323 (366)
230 PF08579 RPM2: Mitochondrial r 94.0 0.7 1.5E-05 46.9 11.6 81 1178-1259 27-116 (120)
231 PF08579 RPM2: Mitochondrial r 93.9 0.49 1.1E-05 48.0 10.3 82 774-855 27-117 (120)
232 PF05843 Suf: Suppressor of fo 93.9 0.36 7.8E-06 58.5 11.5 131 1212-1344 2-136 (280)
233 PF06239 ECSIT: Evolutionarily 93.9 0.52 1.1E-05 53.4 11.6 117 805-936 45-167 (228)
234 PF13371 TPR_9: Tetratricopept 93.8 0.14 3E-06 48.1 6.2 55 1288-1342 2-56 (73)
235 PRK10866 outer membrane biogen 93.8 5.8 0.00012 47.1 21.1 171 1153-1342 40-239 (243)
236 PF14559 TPR_19: Tetratricopep 93.7 0.12 2.7E-06 47.7 5.5 51 1292-1342 2-52 (68)
237 PF12688 TPR_5: Tetratrico pep 93.6 1.3 2.8E-05 46.3 13.4 93 1182-1274 7-102 (120)
238 KOG0550 Molecular chaperone (D 93.6 1 2.2E-05 55.0 14.0 152 1185-1342 178-349 (486)
239 PF12688 TPR_5: Tetratrico pep 93.6 0.53 1.2E-05 49.2 10.5 84 1254-1337 8-97 (120)
240 PRK15363 pathogenicity island 93.4 1.1 2.3E-05 48.8 12.6 86 1223-1311 47-133 (157)
241 PF13428 TPR_14: Tetratricopep 93.3 0.13 2.9E-06 43.3 4.5 42 1282-1323 2-43 (44)
242 PF03704 BTAD: Bacterial trans 93.2 0.9 1.9E-05 49.1 12.2 114 1221-1350 16-136 (146)
243 PRK10803 tol-pal system protei 93.1 0.59 1.3E-05 55.9 11.4 104 1213-1316 145-252 (263)
244 KOG1538 Uncharacterized conser 92.9 7.4 0.00016 49.8 20.2 77 1012-1099 750-828 (1081)
245 PRK10866 outer membrane biogen 92.9 9.7 0.00021 45.2 21.1 54 1051-1104 39-98 (243)
246 PRK10803 tol-pal system protei 92.9 0.97 2.1E-05 54.1 12.7 87 1187-1275 154-245 (263)
247 COG0457 NrfG FOG: TPR repeat [ 92.6 20 0.00044 39.8 25.6 197 1113-1313 62-268 (291)
248 PLN03098 LPA1 LOW PSII ACCUMUL 92.1 0.46 1E-05 59.5 8.8 63 1277-1339 71-136 (453)
249 KOG2280 Vacuolar assembly/sort 92.0 47 0.001 44.2 26.2 114 1208-1339 681-794 (829)
250 PRK11906 transcriptional regul 91.9 6.5 0.00014 49.8 18.4 159 1177-1339 252-431 (458)
251 KOG1920 IkappaB kinase complex 91.9 31 0.00066 48.1 25.4 158 1058-1274 894-1053(1265)
252 KOG4555 TPR repeat-containing 91.1 1.3 2.8E-05 45.8 9.1 84 1256-1339 52-139 (175)
253 PRK11906 transcriptional regul 90.7 2 4.4E-05 54.1 12.4 124 1215-1338 257-395 (458)
254 COG4700 Uncharacterized protei 90.6 22 0.00049 39.4 18.3 127 1174-1301 87-213 (251)
255 PF12921 ATP13: Mitochondrial 90.3 1.8 4E-05 45.6 9.9 53 1242-1294 47-101 (126)
256 PF12921 ATP13: Mitochondrial 90.1 2.5 5.5E-05 44.6 10.8 54 1206-1259 47-100 (126)
257 COG3898 Uncharacterized membra 89.9 59 0.0013 40.2 26.5 296 774-1079 84-399 (531)
258 KOG3941 Intermediate in Toll s 89.7 1.7 3.6E-05 50.5 9.5 112 1162-1274 51-186 (406)
259 PF02460 Patched: Patched fami 89.7 20 0.00044 50.3 22.5 103 1719-1830 418-523 (798)
260 KOG2066 Vacuolar assembly/sort 89.6 82 0.0018 42.3 25.3 74 945-1021 394-467 (846)
261 PF13525 YfiO: Outer membrane 89.2 16 0.00035 42.0 17.7 170 1153-1335 13-198 (203)
262 KOG2396 HAT (Half-A-TPR) repea 89.2 77 0.0017 40.5 29.6 238 1064-1314 302-564 (568)
263 KOG0543 FKBP-type peptidyl-pro 89.1 3.7 8E-05 50.7 12.6 94 1248-1341 258-352 (397)
264 PF04053 Coatomer_WDAD: Coatom 89.0 2.6 5.6E-05 54.2 11.9 119 1187-1333 272-391 (443)
265 PF04184 ST7: ST7 protein; In 88.9 20 0.00043 45.6 18.6 102 1215-1316 263-381 (539)
266 COG4235 Cytochrome c biogenesi 88.5 8.3 0.00018 46.1 14.5 105 1209-1316 154-262 (287)
267 smart00299 CLH Clathrin heavy 88.1 11 0.00024 40.3 14.5 120 1151-1292 13-136 (140)
268 KOG1130 Predicted G-alpha GTPa 87.7 5 0.00011 48.9 12.0 96 1178-1273 237-341 (639)
269 KOG1258 mRNA processing protei 87.5 1.1E+02 0.0023 40.2 33.1 185 1143-1331 295-491 (577)
270 PF13424 TPR_12: Tetratricopep 87.5 1.3 2.8E-05 42.2 6.1 61 1249-1309 7-74 (78)
271 KOG0550 Molecular chaperone (D 87.3 18 0.00038 44.8 16.3 149 1157-1313 181-353 (486)
272 PLN03098 LPA1 LOW PSII ACCUMUL 87.2 3.1 6.7E-05 52.5 10.5 63 1247-1310 75-141 (453)
273 PF03407 Nucleotid_trans: Nucl 86.8 3.3 7.2E-05 47.9 10.2 110 477-610 46-156 (212)
274 KOG1130 Predicted G-alpha GTPa 86.6 4 8.6E-05 49.7 10.5 127 1213-1339 197-339 (639)
275 PF03704 BTAD: Bacterial trans 86.6 4.7 0.0001 43.5 10.6 70 1179-1249 65-138 (146)
276 PF13424 TPR_12: Tetratricopep 86.0 2.4 5.2E-05 40.3 7.1 62 1213-1274 7-73 (78)
277 COG5107 RNA14 Pre-mRNA 3'-end 85.2 1.1E+02 0.0025 38.4 33.7 143 1175-1321 396-542 (660)
278 PF00515 TPR_1: Tetratricopept 85.2 1.4 3.1E-05 34.6 4.2 33 1282-1314 2-34 (34)
279 PF05637 Glyco_transf_34: gala 85.1 0.5 1.1E-05 55.7 2.2 159 478-644 60-232 (239)
280 PF07719 TPR_2: Tetratricopept 84.7 1.9 4.2E-05 33.6 4.8 33 1282-1314 2-34 (34)
281 PF14432 DYW_deaminase: DYW fa 84.0 0.2 4.2E-06 52.1 -1.6 110 1350-1486 1-115 (116)
282 PF09205 DUF1955: Domain of un 83.9 43 0.00093 35.4 14.9 65 1283-1347 88-152 (161)
283 PF10300 DUF3808: Protein of u 83.5 26 0.00057 45.8 17.1 104 1225-1331 247-356 (468)
284 KOG0543 FKBP-type peptidyl-pro 83.3 9.8 0.00021 47.1 12.0 86 1153-1239 216-319 (397)
285 COG4105 ComL DNA uptake lipopr 82.6 1.1E+02 0.0024 36.2 20.3 58 1287-1344 173-233 (254)
286 KOG2114 Vacuolar assembly/sort 82.1 2.1E+02 0.0046 39.0 29.8 75 1253-1330 711-786 (933)
287 smart00299 CLH Clathrin heavy 81.9 38 0.00082 36.2 15.0 84 812-898 12-95 (140)
288 PF13525 YfiO: Outer membrane 81.7 24 0.00051 40.6 14.1 52 1053-1104 14-71 (203)
289 KOG3941 Intermediate in Toll s 81.5 12 0.00026 43.8 11.0 97 758-854 51-170 (406)
290 COG4105 ComL DNA uptake lipopr 81.4 81 0.0018 37.3 17.9 160 1156-1315 45-238 (254)
291 KOG1920 IkappaB kinase complex 81.3 2.5E+02 0.0054 39.8 24.6 114 1151-1275 914-1027(1265)
292 PF02259 FAT: FAT domain; Int 80.7 1.4E+02 0.003 37.1 21.9 33 1295-1327 272-304 (352)
293 PRK09687 putative lyase; Provi 80.4 1.5E+02 0.0032 36.1 26.6 79 1042-1122 35-117 (280)
294 KOG4555 TPR repeat-containing 80.3 9.8 0.00021 39.7 8.8 53 1186-1239 53-105 (175)
295 PF07079 DUF1347: Protein of u 80.1 1.8E+02 0.0039 37.0 39.0 59 1280-1339 459-519 (549)
296 COG5107 RNA14 Pre-mRNA 3'-end 79.5 1.8E+02 0.004 36.7 35.7 145 1146-1296 398-550 (660)
297 PLN03181 glycosyltransferase; 79.4 5.5 0.00012 49.3 8.0 109 476-604 180-303 (453)
298 PF09613 HrpB1_HrpK: Bacterial 79.1 42 0.00091 36.9 13.7 100 1220-1324 19-119 (160)
299 TIGR03480 HpnN hopanoid biosyn 78.8 2.3 5.1E-05 60.0 5.6 70 1725-1797 2-72 (862)
300 COG3118 Thioredoxin domain-con 78.7 54 0.0012 39.4 15.5 116 1220-1341 143-263 (304)
301 PF10300 DUF3808: Protein of u 78.4 54 0.0012 42.9 17.4 128 1178-1307 231-373 (468)
302 COG1729 Uncharacterized protei 78.3 18 0.0004 42.8 11.6 98 1178-1278 144-246 (262)
303 PF13428 TPR_14: Tetratricopep 78.3 3.7 7.9E-05 34.6 4.5 41 1248-1288 2-42 (44)
304 PF04053 Coatomer_WDAD: Coatom 78.2 53 0.0011 42.6 16.8 102 951-1069 326-427 (443)
305 PF13512 TPR_18: Tetratricopep 77.3 28 0.00062 37.4 11.7 75 1254-1328 17-97 (142)
306 PF13281 DUF4071: Domain of un 77.3 33 0.00072 43.0 14.1 42 1297-1339 242-284 (374)
307 KOG2114 Vacuolar assembly/sort 76.8 3E+02 0.0064 37.7 28.0 76 1183-1263 712-787 (933)
308 PRK15331 chaperone protein Sic 76.7 29 0.00062 38.3 11.7 86 1221-1309 47-133 (165)
309 KOG2610 Uncharacterized conser 76.7 16 0.00034 43.9 10.3 113 1189-1304 116-232 (491)
310 PF08631 SPO22: Meiosis protei 76.4 1.9E+02 0.004 35.1 23.7 25 1077-1101 38-62 (278)
311 KOG1464 COP9 signalosome, subu 75.3 85 0.0018 36.8 15.2 246 1056-1312 39-330 (440)
312 COG1729 Uncharacterized protei 75.1 21 0.00046 42.3 11.0 104 1213-1317 144-251 (262)
313 KOG2610 Uncharacterized conser 74.3 44 0.00094 40.3 13.0 178 1157-1339 115-310 (491)
314 KOG0890 Protein kinase of the 74.1 5.5E+02 0.012 39.5 36.4 109 1212-1324 1671-1798(2382)
315 KOG1934 Predicted membrane pro 72.6 1E+02 0.0022 43.1 18.2 101 1721-1830 453-556 (868)
316 COG3947 Response regulator con 71.4 1.6E+02 0.0034 35.4 16.4 97 1246-1342 226-340 (361)
317 COG3118 Thioredoxin domain-con 71.2 1.3E+02 0.0029 36.3 16.1 114 1157-1274 146-263 (304)
318 KOG4648 Uncharacterized conser 69.9 13 0.00028 44.5 7.6 102 1222-1330 108-210 (536)
319 TIGR00920 2A060605 3-hydroxy-3 69.7 2.4 5.3E-05 57.0 1.9 31 1721-1751 2-32 (886)
320 PF04097 Nic96: Nup93/Nic96; 69.0 2.1E+02 0.0045 39.0 19.9 47 873-922 113-159 (613)
321 PF13181 TPR_8: Tetratricopept 68.0 8.6 0.00019 30.0 4.1 32 1282-1313 2-33 (34)
322 PF13170 DUF4003: Protein of u 68.0 58 0.0012 39.9 13.0 92 1161-1255 119-225 (297)
323 KOG1941 Acetylcholine receptor 67.7 3.1E+02 0.0067 33.9 18.6 192 1046-1237 45-272 (518)
324 COG2409 Predicted drug exporte 67.6 7.5 0.00016 55.1 6.1 99 1722-1829 358-457 (937)
325 PF00637 Clathrin: Region in C 67.2 1.6 3.4E-05 47.1 -0.5 84 914-1000 13-96 (143)
326 KOG4279 Serine/threonine prote 66.2 76 0.0016 42.0 13.5 100 1186-1314 297-399 (1226)
327 COG3629 DnrI DNA-binding trans 66.0 28 0.00061 41.8 9.5 76 1145-1220 153-236 (280)
328 PF07035 Mic1: Colon cancer-as 65.9 1.5E+02 0.0033 33.0 14.4 134 792-938 14-150 (167)
329 PF13170 DUF4003: Protein of u 64.9 67 0.0015 39.3 12.8 143 770-913 58-222 (297)
330 PRK15180 Vi polysaccharide bio 63.9 34 0.00074 42.7 9.7 127 1188-1318 301-428 (831)
331 PF04184 ST7: ST7 protein; In 62.4 1.1E+02 0.0024 39.3 13.9 136 1189-1339 181-319 (539)
332 PRK12798 chemotaxis protein; R 61.2 4.5E+02 0.0097 33.5 21.9 166 1158-1328 125-303 (421)
333 PF13176 TPR_7: Tetratricopept 60.8 13 0.00028 29.9 3.8 28 1283-1310 1-28 (36)
334 COG1747 Uncharacterized N-term 60.8 4.8E+02 0.01 33.8 21.8 162 771-938 65-235 (711)
335 PF09205 DUF1955: Domain of un 60.5 1.7E+02 0.0036 31.3 12.4 85 1056-1142 68-152 (161)
336 PRK09687 putative lyase; Provi 59.2 4E+02 0.0087 32.4 27.3 75 1143-1222 204-278 (280)
337 KOG1550 Extracellular protein 59.0 1.5E+02 0.0032 39.9 15.6 161 1187-1354 260-436 (552)
338 PF13512 TPR_18: Tetratricopep 59.0 80 0.0017 34.1 10.4 114 1184-1315 18-133 (142)
339 KOG1941 Acetylcholine receptor 58.3 96 0.0021 38.0 11.8 44 1086-1129 17-62 (518)
340 KOG0292 Vesicle coat complex C 58.1 11 0.00024 50.2 4.5 125 1189-1350 606-730 (1202)
341 PRK11619 lytic murein transgly 57.6 6.7E+02 0.014 34.4 32.0 116 1190-1308 255-373 (644)
342 TIGR03480 HpnN hopanoid biosyn 55.7 24 0.00053 49.9 7.9 62 1723-1785 435-496 (862)
343 COG4785 NlpI Lipoprotein NlpI, 55.2 3.3E+02 0.0071 31.5 14.5 175 1159-1342 79-264 (297)
344 COG3629 DnrI DNA-binding trans 55.0 42 0.00092 40.4 8.4 62 1248-1309 154-215 (280)
345 PF10602 RPN7: 26S proteasome 54.6 1.8E+02 0.0039 32.8 13.1 59 1179-1237 39-99 (177)
346 KOG4570 Uncharacterized conser 54.3 71 0.0015 38.4 9.7 98 1139-1240 58-164 (418)
347 TIGR02561 HrpB1_HrpK type III 53.0 1.9E+02 0.0041 31.5 11.9 88 1222-1313 21-109 (153)
348 TIGR00833 actII Transport prot 52.9 30 0.00065 49.2 8.1 87 1734-1827 1-88 (910)
349 KOG1585 Protein required for f 52.7 4.6E+02 0.0099 31.0 16.7 24 1249-1272 152-175 (308)
350 KOG4234 TPR repeat-containing 52.7 53 0.0011 37.1 7.9 93 1221-1315 105-202 (271)
351 PF08631 SPO22: Meiosis protei 52.1 5.1E+02 0.011 31.4 23.6 160 1177-1339 85-270 (278)
352 KOG4234 TPR repeat-containing 51.6 1.5E+02 0.0033 33.6 11.2 88 1184-1276 103-197 (271)
353 TIGR02508 type_III_yscG type I 51.3 1.6E+02 0.0035 29.8 10.0 86 722-811 21-106 (115)
354 KOG1258 mRNA processing protei 50.6 7.5E+02 0.016 32.9 32.5 128 771-901 44-180 (577)
355 PF07035 Mic1: Colon cancer-as 50.3 4.1E+02 0.0088 29.7 15.3 118 1173-1304 26-143 (167)
356 PF04530 Viral_Beta_CD: Viral 50.0 23 0.00049 36.6 4.3 17 1607-1623 4-20 (122)
357 KOG1308 Hsp70-interacting prot 49.5 8.9 0.00019 46.4 1.7 92 1260-1351 127-218 (377)
358 COG2976 Uncharacterized protei 49.3 4.6E+02 0.0099 30.1 15.3 118 1194-1316 70-194 (207)
359 PRK13800 putative oxidoreducta 47.7 1.1E+03 0.023 33.9 24.9 248 1041-1309 632-880 (897)
360 PF13176 TPR_7: Tetratricopept 47.5 34 0.00073 27.4 4.3 24 1179-1202 2-25 (36)
361 PF02259 FAT: FAT domain; Int 46.3 6.6E+02 0.014 31.0 22.2 59 1146-1204 147-212 (352)
362 PF10602 RPN7: 26S proteasome 45.7 1.4E+02 0.0031 33.5 10.5 59 774-832 38-98 (177)
363 PF10345 Cohesin_load: Cohesin 45.5 9.6E+02 0.021 32.7 33.7 417 740-1171 58-603 (608)
364 PF14853 Fis1_TPR_C: Fis1 C-te 45.4 43 0.00094 29.7 4.9 34 1286-1319 6-39 (53)
365 PF13431 TPR_17: Tetratricopep 44.9 22 0.00047 28.3 2.7 25 1243-1267 8-33 (34)
366 KOG0890 Protein kinase of the 44.8 1.6E+03 0.035 35.1 30.0 59 1280-1340 1669-1727(2382)
367 KOG0403 Neoplastic transformat 44.7 7.8E+02 0.017 31.4 19.2 58 1048-1105 513-573 (645)
368 COG4455 ImpE Protein of avirul 44.7 2.5E+02 0.0055 32.5 11.7 127 1179-1316 4-140 (273)
369 PF13374 TPR_10: Tetratricopep 44.5 39 0.00084 27.3 4.4 27 1283-1309 4-30 (42)
370 PF15469 Sec5: Exocyst complex 44.1 3.9E+02 0.0085 30.1 13.8 118 1178-1319 59-177 (182)
371 smart00028 TPR Tetratricopepti 43.7 33 0.0007 24.8 3.6 31 1283-1313 3-33 (34)
372 KOG1950 Glycosyl transferase, 43.4 32 0.00069 43.6 5.4 151 493-650 122-288 (369)
373 KOG1464 COP9 signalosome, subu 43.4 2.3E+02 0.005 33.4 11.4 177 1159-1335 41-251 (440)
374 KOG0276 Vesicle coat complex C 43.2 86 0.0019 40.8 8.7 146 1158-1339 599-745 (794)
375 PF13929 mRNA_stabil: mRNA sta 43.2 6.9E+02 0.015 30.4 15.9 59 939-997 198-261 (292)
376 PF09613 HrpB1_HrpK: Bacterial 42.0 97 0.0021 34.1 8.0 64 1282-1345 8-74 (160)
377 PF11051 Mannosyl_trans3: Mann 41.9 63 0.0014 39.1 7.4 36 484-519 79-114 (271)
378 PF11207 DUF2989: Protein of u 41.9 1E+02 0.0022 35.3 8.3 76 1258-1334 118-197 (203)
379 KOG1586 Protein required for f 41.6 4.5E+02 0.0098 30.9 13.1 23 1293-1315 166-188 (288)
380 PF00515 TPR_1: Tetratricopept 40.8 50 0.0011 25.6 4.3 27 1178-1204 3-29 (34)
381 KOG3807 Predicted membrane pro 40.1 3.2E+02 0.007 33.1 12.1 160 1122-1316 228-397 (556)
382 KOG4748 Subunit of Golgi manno 39.9 25 0.00053 43.4 3.4 181 475-670 156-354 (364)
383 PF13929 mRNA_stabil: mRNA sta 39.8 2E+02 0.0042 34.9 10.6 115 1192-1306 144-263 (292)
384 PRK10941 hypothetical protein; 39.5 69 0.0015 38.6 7.0 52 1285-1336 185-236 (269)
385 COG4785 NlpI Lipoprotein NlpI, 39.4 74 0.0016 36.4 6.6 88 1225-1315 79-167 (297)
386 cd00923 Cyt_c_Oxidase_Va Cytoc 38.7 1.4E+02 0.003 30.0 7.6 62 787-850 22-84 (103)
387 PF13174 TPR_6: Tetratricopept 37.9 48 0.001 25.3 3.7 28 1286-1313 5-32 (33)
388 KOG1586 Protein required for f 37.9 7.4E+02 0.016 29.2 16.1 59 1258-1316 165-230 (288)
389 PF11768 DUF3312: Protein of u 37.5 2E+02 0.0043 37.7 10.9 127 1150-1302 413-544 (545)
390 cd00923 Cyt_c_Oxidase_Va Cytoc 36.9 1.8E+02 0.0038 29.4 7.9 61 1193-1255 24-84 (103)
391 TIGR02561 HrpB1_HrpK type III 36.8 1.2E+02 0.0025 33.1 7.4 53 1293-1345 22-74 (153)
392 KOG1928 Alpha-1,4-N-acetylgluc 36.7 19 0.00041 44.3 1.8 32 482-517 228-259 (409)
393 PF02284 COX5A: Cytochrome c o 36.2 1.7E+02 0.0036 29.8 7.8 60 1194-1255 28-87 (108)
394 PF00637 Clathrin: Region in C 36.1 23 0.0005 38.0 2.2 85 1015-1102 13-97 (143)
395 KOG4570 Uncharacterized conser 36.0 1.5E+02 0.0033 35.8 8.7 99 937-1039 58-165 (418)
396 PRK09169 hypothetical protein; 35.4 2.1E+03 0.046 33.8 48.6 433 907-1339 245-771 (2316)
397 PF13374 TPR_10: Tetratricopep 34.2 73 0.0016 25.6 4.5 27 1177-1203 3-29 (42)
398 KOG2034 Vacuolar sorting prote 33.8 1.5E+03 0.033 31.6 23.8 133 1047-1195 507-647 (911)
399 PRK13342 recombination factor 33.6 7.2E+02 0.016 32.0 15.6 47 1078-1124 230-279 (413)
400 KOG4648 Uncharacterized conser 33.5 56 0.0012 39.4 4.8 84 1255-1339 105-189 (536)
401 KOG4507 Uncharacterized conser 33.4 84 0.0018 40.6 6.5 98 1222-1322 618-717 (886)
402 PRK10941 hypothetical protein; 32.9 2.2E+02 0.0047 34.4 9.8 71 1251-1321 185-255 (269)
403 PF02284 COX5A: Cytochrome c o 32.0 2.7E+02 0.0059 28.4 8.4 71 1265-1347 28-99 (108)
404 PF10819 DUF2564: Protein of u 31.7 1.1E+02 0.0024 29.2 5.4 69 248-317 7-79 (79)
405 KOG1550 Extracellular protein 31.4 4.3E+02 0.0093 35.5 13.4 117 1157-1276 261-393 (552)
406 PHA02875 ankyrin repeat protei 31.3 7.9E+02 0.017 31.4 15.6 149 1051-1212 72-231 (413)
407 PF11207 DUF2989: Protein of u 30.5 2.5E+02 0.0054 32.3 9.0 74 1193-1267 123-198 (203)
408 PF13934 ELYS: Nuclear pore co 30.4 6.3E+02 0.014 29.7 13.0 119 1178-1310 78-198 (226)
409 KOG2062 26S proteasome regulat 30.1 1.6E+03 0.035 30.8 27.8 119 1185-1309 510-634 (929)
410 PF09670 Cas_Cas02710: CRISPR- 29.7 5E+02 0.011 33.0 12.9 53 1186-1239 141-197 (379)
411 PF07719 TPR_2: Tetratricopept 29.7 96 0.0021 23.8 4.3 27 1178-1204 3-29 (34)
412 PRK15180 Vi polysaccharide bio 29.5 2.8E+02 0.006 35.2 9.8 141 1223-1367 301-441 (831)
413 KOG0403 Neoplastic transformat 29.4 1.3E+03 0.029 29.6 16.8 58 1149-1206 513-573 (645)
414 PF07163 Pex26: Pex26 protein; 29.2 3.8E+02 0.0083 32.3 10.5 88 1183-1273 90-184 (309)
415 KOG1585 Protein required for f 29.0 1E+03 0.023 28.2 16.5 83 1151-1234 156-250 (308)
416 KOG0276 Vesicle coat complex C 28.9 3.2E+02 0.0069 36.0 10.4 132 911-1071 617-748 (794)
417 PF13762 MNE1: Mitochondrial s 28.6 3.7E+02 0.0081 29.3 9.6 78 743-820 41-128 (145)
418 KOG2066 Vacuolar assembly/sort 28.3 1.8E+03 0.038 30.6 25.0 74 743-819 394-467 (846)
419 PF06552 TOM20_plant: Plant sp 28.0 2.2E+02 0.0049 32.0 8.0 46 1297-1349 96-141 (186)
420 COG4941 Predicted RNA polymera 27.7 7.7E+02 0.017 30.5 12.7 134 1174-1320 262-404 (415)
421 KOG0991 Replication factor C, 27.6 1E+03 0.022 28.0 13.1 157 1151-1338 136-292 (333)
422 COG1747 Uncharacterized N-term 27.6 1.5E+03 0.033 29.6 22.0 65 1226-1290 184-248 (711)
423 KOG3824 Huntingtin interacting 27.6 77 0.0017 37.8 4.6 64 1258-1321 127-190 (472)
424 TIGR02508 type_III_yscG type I 27.2 6.8E+02 0.015 25.6 10.1 88 822-913 20-107 (115)
425 COG3947 Response regulator con 27.1 1.2E+03 0.026 28.4 15.1 57 1251-1307 283-339 (361)
426 COG4649 Uncharacterized protei 26.4 9.7E+02 0.021 27.0 16.1 121 1186-1309 68-195 (221)
427 PF03071 GNT-I: GNT-I family; 26.4 1.3E+02 0.0028 38.6 6.6 119 365-518 93-214 (434)
428 cd02515 Glyco_transf_6 Glycosy 26.4 6.6E+02 0.014 30.2 11.8 134 479-620 101-246 (271)
429 PF03314 DUF273: Protein of un 25.2 43 0.00093 38.1 2.0 27 488-514 34-60 (222)
430 PRK15383 type III secretion sy 25.1 54 0.0012 37.5 2.7 23 497-519 220-242 (335)
431 KOG2063 Vacuolar assembly/sort 25.0 1.6E+03 0.034 31.8 16.7 126 774-919 506-637 (877)
432 PF11500 Cut12: Spindle pole b 24.4 98 0.0021 33.7 4.4 51 200-257 66-118 (152)
433 COG4976 Predicted methyltransf 24.3 99 0.0022 35.8 4.5 61 1256-1316 4-64 (287)
434 PRK15382 non-LEE encoded effec 24.3 57 0.0012 37.4 2.7 23 497-519 212-234 (326)
435 PF11663 Toxin_YhaV: Toxin wit 23.9 58 0.0013 34.6 2.5 56 660-718 84-139 (140)
436 PF13323 HPIH: N-terminal doma 23.9 35 0.00077 37.3 1.0 38 1719-1756 2-39 (153)
437 COG2409 Predicted drug exporte 23.8 1.7E+02 0.0038 41.8 8.0 74 1725-1798 3-77 (937)
438 PRK15384 type III secretion sy 23.8 55 0.0012 37.4 2.5 23 497-519 217-239 (336)
439 PF11838 ERAP1_C: ERAP1-like C 23.6 1.4E+03 0.03 27.9 17.9 26 1060-1085 56-83 (324)
440 PF09477 Type_III_YscG: Bacter 23.4 7.6E+02 0.017 25.6 9.8 79 721-802 21-99 (116)
441 KOG0994 Extracellular matrix g 23.2 6E+02 0.013 36.0 11.8 106 214-322 1528-1638(1758)
442 PF13762 MNE1: Mitochondrial s 23.1 8.6E+02 0.019 26.6 11.1 51 1174-1224 77-128 (145)
443 KOG3229 Vacuolar sorting prote 23.1 7.5E+02 0.016 28.3 10.7 111 214-351 82-194 (227)
444 PF07721 TPR_4: Tetratricopept 23.1 1.1E+02 0.0025 22.5 3.3 21 1251-1271 5-25 (26)
445 PF06552 TOM20_plant: Plant sp 23.0 1E+02 0.0023 34.5 4.3 34 1297-1330 51-84 (186)
446 TIGR02977 phageshock_pspA phag 22.6 2.5E+02 0.0053 32.9 7.7 105 214-320 27-137 (219)
447 PF12273 RCR: Chitin synthesis 22.6 72 0.0016 34.0 3.0 19 1766-1784 61-81 (130)
448 PF04910 Tcf25: Transcriptiona 21.5 6.3E+02 0.014 31.9 11.5 60 1280-1339 99-163 (360)
449 PF04910 Tcf25: Transcriptiona 21.3 1.7E+03 0.037 28.1 18.5 146 1182-1333 109-279 (360)
450 KOG3364 Membrane protein invol 20.7 4.1E+02 0.0088 28.7 7.7 73 1244-1316 29-106 (149)
451 PHA02875 ankyrin repeat protei 20.7 9.5E+02 0.02 30.6 13.4 78 882-968 9-90 (413)
452 PF05704 Caps_synth: Capsular 20.6 2.4E+02 0.0053 34.2 7.3 100 360-517 41-143 (276)
453 COG4455 ImpE Protein of avirul 20.5 1.4E+03 0.031 26.8 12.4 126 1213-1352 3-141 (273)
454 PF04488 Gly_transf_sug: Glyco 20.0 68 0.0015 32.5 2.1 34 479-516 63-97 (103)
No 1
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=100.00 E-value=1.2e-149 Score=1347.34 Aligned_cols=631 Identities=75% Similarity=1.181 Sum_probs=608.0
Q ss_pred hhcCCCCcC-CCCCCCCCCCCCccchhhheeeccccccEEEeeeeccCCcccceecCCCCCCCCCCCCcccc--chhhhc
Q 040435 46 KAHRPLYDK-GDGAARFNNDPDIKDIDIIATYSDVSGAVRISRVKMSHLSASWILENPADGDNGLPNSSQTL--GDSFQA 122 (1991)
Q Consensus 46 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 122 (1991)
++|++++++ +++++++|+++|+++|||++||||++|+||+++|++++|++||+||||+++++++|+++|++ ++.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (657)
T PLN02910 23 LQDNNLDEVYASSAAGVGNDPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQN 102 (657)
T ss_pred cccccccccccccCcccCCCccccchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhcc
Confidence 678888888 69999999999999999999999999999999999999999999999999999999999999 344555
Q ss_pred ccCcccccCCCCCCCCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhHHHHHhhhccCccccc
Q 040435 123 GMNLEENVEYPMGDHQSEEVGFFNRQKPPLSPVKLKRQMLRQKRMELRTAELIRQDNENDNIMQETAFEQSKRLEPRVTG 202 (1991)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1991)
+.+.++.++++ +++|++|+|++++++.+++|+||+||++||+|++.|++||+|||+|++.++|++||||||++|++++|
T Consensus 103 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g 181 (657)
T PLN02910 103 GTGEEDNVSHS-TTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKG 181 (657)
T ss_pred Ccccccchhhh-hhhccccccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCccccc
Confidence 55555555555 58899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHH
Q 040435 203 KYSIWRRDFESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGH 282 (1991)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (1991)
||||||+||+++++|+++|+|||||||||||++|||.+|+.+|++||+++|||+||+||+|+.|++||+++++++|+|++
T Consensus 182 ~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~ 261 (657)
T PLN02910 182 KYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGH 261 (657)
T ss_pred ceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCC
Q 040435 283 VLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFE 362 (1991)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~ 362 (1991)
+|++||+.+|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+||||.|||.++.+.++.|++++++
T Consensus 262 ~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~ 341 (657)
T PLN02910 262 VLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLE 341 (657)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred CCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhH
Q 040435 363 DPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSV 442 (1991)
Q Consensus 363 ~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~ 442 (1991)
||+++|||++||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++++|+|+++|+|+|++.+|+++
T Consensus 342 dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pv 421 (657)
T PLN02910 342 DPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSV 421 (657)
T ss_pred CCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 443 LRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 443 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
++|+++.....|||..+..........+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|
T Consensus 422 l~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g 501 (657)
T PLN02910 422 LRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQG 501 (657)
T ss_pred HHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCC
Confidence 99999999999999987776666667799999999999999999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+++|||++|...++++..+++|++|.+..+|++..||||+|||+|||++||++++|+.++.|++.+.+..+|+++.++++
T Consensus 502 ~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqgsLPpg 581 (657)
T PLN02910 502 MVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLGSLPPG 581 (657)
T ss_pred ceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccCCCChH
Confidence 99999999999888999999999999988999999999999999999999999999999999999888888999999999
Q ss_pred hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 603 LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 603 n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
.++|++++++||.+||++|+||++......+++++||||+|+.|||.+.+..+|+++|.||++.|+||++.||+.
T Consensus 582 LLvF~g~i~pLD~rWNv~GLGyd~~v~~~~i~~AAVLHynG~~KPWl~l~i~~Yr~~W~kYl~~d~~fl~~Cni~ 656 (657)
T PLN02910 582 LITFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAVVHYNGNYKPWLDLAIAKYKPYWSRYVQYDNPYLQLCNIS 656 (657)
T ss_pred HHHHhCceeecCchheecCCCCCcccccccccCcEEEEeCCCCCcccccCcccchHHHHHHccCCChHHHhCCCC
Confidence 999999999999999999999999988888999999999999999999999999999999999999999999974
No 2
>PLN02829 Probable galacturonosyltransferase
Probab=100.00 E-value=2.4e-110 Score=1010.95 Aligned_cols=461 Identities=59% Similarity=1.049 Sum_probs=445.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 040435 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQL 291 (1991)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1991)
+..++|+++|+|||||||||||++|||.+++++|++||+++|||+||+||||++|++||+++.+++|+|+++|++||+.+
T Consensus 177 ~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~ 256 (639)
T PLN02829 177 QTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQ 256 (639)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCCCCCcceEEE
Q 040435 292 YDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAI 371 (1991)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~ 371 (1991)
|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+||||.|||.++.+..+.|++++++||+++|||+
T Consensus 257 ~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy~i 336 (639)
T PLN02829 257 DDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHYAL 336 (639)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999977888899999999999999
Q ss_pred EcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccc
Q 040435 372 FSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARL 451 (1991)
Q Consensus 372 ~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~ 451 (1991)
+||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++++|+|+++|+|+|++.+|+++++||++...
T Consensus 337 fSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~~~ 416 (639)
T PLN02829 337 FSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQSM 416 (639)
T ss_pred EecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccc
Q 040435 452 KEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETC 531 (1991)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~ 531 (1991)
..|+|..... ....+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++||++||+|+++|||+||
T Consensus 417 ~~~yf~~~~~----~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc 492 (639)
T PLN02829 417 IDYYFRAHRA----NSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETC 492 (639)
T ss_pred hhhhhhcccc----CcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccc
Confidence 9999976332 234788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccccc
Q 040435 532 KESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTY 611 (1991)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~~ 611 (1991)
...++++..+++|++|.+..+|.+..||||+|||||||++||++++|++++.|++.+.+..+|+++.++++.++|+++++
T Consensus 493 ~~~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g~i~ 572 (639)
T PLN02829 493 GESFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRTY 572 (639)
T ss_pred hhhhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcCceE
Confidence 98888999999999999888899999999999999999999999999999999988888888999999999999999999
Q ss_pred cccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccccc
Q 040435 612 PLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNL 676 (1991)
Q Consensus 612 ~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~ 676 (1991)
+||.+||++|+||++......+++++||||+|+.|||.+.+..+|+.+|.+|++.++||++.||+
T Consensus 573 ~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni 637 (639)
T PLN02829 573 PLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNI 637 (639)
T ss_pred ecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCC
Confidence 99999999999999887778899999999999999999999999999999999999999999997
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.9e-105 Score=1101.90 Aligned_cols=804 Identities=30% Similarity=0.498 Sum_probs=757.9
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHH
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFTSIGN 745 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~~~~n 745 (1991)
..+....+|.++.+|.+.|++++|+.+|++|.+.|+.| +..+|..++++|...+ ...|.++|+.+++.|..++..++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPV-DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 34566779999999999999999999999999999865 7889999999999876 788999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 040435 746 ALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYE 825 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~ 825 (1991)
+||.+|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|+..|+.||.+||+.+|++|++.+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCC
Q 040435 826 GLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKN 904 (1991)
Q Consensus 826 a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv 904 (1991)
+.++|..+++.|+.+|..++|+||.+|++ |++++|.++|++|++||+++||+||.+|++.|+.++|+++|.+|.+. |+
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~ 284 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SV 284 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999987 89
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHH
Q 040435 905 EPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGL 984 (1991)
Q Consensus 905 ~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~ 984 (1991)
.||..||+++|.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..||+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Q 040435 985 VVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 985 ~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~ 1064 (1991)
++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1065 KLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1065 ~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.|+++|..+.+.|+.++
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~ 523 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFD 523 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcc
Confidence 999999999999999999999999999999999999986 6999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
..++|+||++|+|+|++++|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|++.
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 602 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
|++++|.++|+.|.+++|+.|+..||++|+++|+|+|++++|.+++++|+ ++||..+|++|+++|+.||+.+.|+.++
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99999999999998889999999999999999999999999999999998 7899999999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHH
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLAC 1384 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~ 1384 (1991)
+++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.||+|||+|++++|.|++||.+ ||+.++||..+.
T Consensus 681 ~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~--h~~~~~i~~~l~ 758 (857)
T PLN03077 681 QHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES--HPQIKEINTVLE 758 (857)
T ss_pred HHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC--CcchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999976 789999999888
Q ss_pred HhhcccccccccccccccccccccccccccccCCCCCCCccccCCCCCCCCCChhH-HHHHHhhCcCCCCCCCCCHHHHH
Q 040435 1385 LVTAEKTDTLLIKDVTSSERHSKEYCAMYDICGERSDGKVLNCPYGSPSVKPDELF-SAKIESLCPSISGNVCCTETQFE 1463 (1991)
Q Consensus 1385 ~l~~~~~~~~~~~dvts~~~~~~~~c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~-~~~l~~~Cp~~~~~~CC~~~q~~ 1463 (1991)
.|...+...++.++.... .+..+.-.-...|+|+ ++|+.+|+...+|++.+. ..++.++|+ .|.+.-.+-
T Consensus 759 ~l~~~~~~~g~~~~~~~~-~~~~~~~k~~~~~~hs---e~la~a~~l~~~~~~~~i~i~knlr~c~-----dch~~~k~~ 829 (857)
T PLN03077 759 GFYEKMKASGLAGSESSS-MDEIEVSKDDIFCGHS---ERLAIAFGLINTVPGMPIWVTKNLYMCE-----NCHNTVKFI 829 (857)
T ss_pred HHHHHHHhCCcCCCcchh-ccccHHHHHHHHHhcc---HHHHHHHhhhcCCCCCeEEEeCCCEeCc-----cHHHHHHHH
Confidence 777766655555543221 1111111111234444 789999999888887666 478899999 898887643
Q ss_pred HHHHHHHhhcccccCChhHHhhHhhhcc
Q 040435 1464 TLRAQVQQAIPFLVGCPACLRNFLNLFC 1491 (1991)
Q Consensus 1464 ~l~~~~~~~~~~~~~CpaC~~N~~~~~C 1491 (1991)
+.+ .-+.++-|=+.+++.|.+-.|
T Consensus 830 ---s~~-~~r~i~~rd~~rfh~f~~g~c 853 (857)
T PLN03077 830 ---SKI-VRREISVRDTEQFHHFKDGEC 853 (857)
T ss_pred ---HHH-hCeEEEEecCCcceeCCCCcc
Confidence 333 226788899999999999988
No 4
>PLN02769 Probable galacturonosyltransferase
Probab=100.00 E-value=5.1e-107 Score=992.46 Aligned_cols=471 Identities=36% Similarity=0.650 Sum_probs=435.8
Q ss_pred hhhccCcccccchhccccccCCCChhHHHHHHHHHHHHHHHH-HHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCC
Q 040435 192 QSKRLEPRVTGKYSIWRRDFESPNTDSTLKLMRDQIILAKAY-AHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELP 270 (1991)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (1991)
.+...|.-+.|+|||||+||+++++|+++|+||||||||||| ++|||.+|+.+|++||++||||+||+||||+.|++||
T Consensus 155 e~~~~c~~~~g~y~~w~~e~~~~~~d~~~~~l~Dql~~Ak~y~~~iak~~~~~~l~~el~~~i~e~~~~l~~~~~d~dlp 234 (629)
T PLN02769 155 ENEKSCELEFGSYCLWSEEHKEVMKDSIVKRLKDQLFVARAYYPSIAKLPGQEKLTRELKQNIQEHERVLSESITDADLP 234 (629)
T ss_pred cccccceeeccceeeecccccccCcHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 445789999999999999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCC
Q 040435 271 SSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGH 350 (1991)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~ 350 (1991)
+++.+++++|+++|++||+.+|||.++++|||+||+++||++++++||++|++||||+|||||||||+||||.|||.++.
T Consensus 235 ~~~~~~~~~m~~~~~~ak~~~~dc~~~~~klr~~l~~~E~~~~~~~kq~~~l~~laa~t~PK~lHCL~mrLt~ey~~~~~ 314 (629)
T PLN02769 235 PFIQKKLEKMEQTIARAKSCPVDCNNVDRKLRQILDMTEDEAHFHMKQSAFLYQLGVQTMPKSHHCLSMRLTVEYFKSSS 314 (629)
T ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccchhhHHHHHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccc
Q 040435 351 HKKEEQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENID 430 (1991)
Q Consensus 351 ~~~~~~~~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~ 430 (1991)
++.+.+++++++||+++|||++||||+|++|+|+|++.|+++|+++|||||||+.++.+|++||..|++++++|+|+++|
T Consensus 315 ~~~~~~~~~~l~d~~l~Hy~ifSdNvlAasvvvNStv~na~~p~~~VFHiVTD~~n~~am~~WF~~n~~~~a~v~v~n~e 394 (629)
T PLN02769 315 LDMEDSNSEKFSDPSLRHYVIFSKNVLAASVVINSTVVHSRESGNIVFHVLTDAQNYYAMKHWFDRNSYKEAAVQVLNIE 394 (629)
T ss_pred hhccCCchhhccCCccceEEEEeccceeeeeehhhhhhhccCccceEEEEecChhhHHHHHHHHhcCCCccceEEEeeee
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEec
Q 040435 431 SFKWLNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQK 510 (1991)
Q Consensus 431 ~f~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~ 510 (1991)
+|+|.+. .+++++|++......++|..... +..+.++|+|+|+++|+|||||++||+++||||||+|+||++
T Consensus 395 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~eyiS~~nh~RfyIPELLP~LdKVLYLD~DVVVqg 466 (629)
T PLN02769 395 DLILKDL-DKFALKQLSLPEEFRVSFRSVDN-------PSSKQMRTEYLSVFSHSHFLLPEIFKKLKKVVVLDDDVVVQR 466 (629)
T ss_pred eeeeccc-chHHHHhhccchhhhhhhccCCC-------CchhccCcccccHHHHHHHHHHHHhhhcCeEEEEeCCEEecC
Confidence 9999765 48999999877655555544321 234566889999999999999999999999999999999999
Q ss_pred CCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchh
Q 040435 511 DLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANED 590 (1991)
Q Consensus 511 dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~ 590 (1991)
||++||++||+|+++|||++|...+..+..+++ ..++.+..||||||||||||++||+++++++++.|++.+..
T Consensus 467 DLseLw~iDL~gkviAAVedc~~rl~~~~~yl~------~~~F~~~~CyFNSGVLLINL~~WRk~nITe~~~~~~~~~~~ 540 (629)
T PLN02769 467 DLSFLWNLDMGGKVNGAVQFCGVRLGQLKNYLG------DTNFDTNSCAWMSGLNVIDLDKWRELDVTETYLKLLQKFSK 540 (629)
T ss_pred cHHHHhcCCCCCCeEEEehhhhhhhhhhhhhhc------ccCCCccccccccCeeEeeHHHHHHhCHHHHHHHHHHHhhh
Confidence 999999999999999999998654444333322 23577889999999999999999999999999999877533
Q ss_pred --ccccccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhh
Q 040435 591 --RTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWS 668 (1991)
Q Consensus 591 --~~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~ 668 (1991)
...|++++|+++|++|++++++||++||++++|++.......+++++||||+|+.|||++.+..+++++|++|++.|+
T Consensus 541 ~~~~~~~~~~Lp~lnlvF~g~v~~LD~rWNv~gLG~~~~i~~~~i~~paIIHYnG~~KPW~e~~i~~yr~~W~kYl~~~~ 620 (629)
T PLN02769 541 DGEESLRAAALPASLLTFQDLIYPLDDRWVLSGLGHDYGIDEQAIKKAAVLHYNGNMKPWLELGIPKYKKYWKRFLNRDD 620 (629)
T ss_pred cccccccccCcCHHHHHhcCeEEECCHHHccccccccccccccccCCcEEEEECCCCCCccCCCCChHHHHHHHHhccCC
Confidence 456888999999999999999999999999999988777777899999999999999999999999999999999999
Q ss_pred hhcccccc
Q 040435 669 LRLRTWNL 676 (1991)
Q Consensus 669 p~l~~cn~ 676 (1991)
+|++.||+
T Consensus 621 ~fl~~Cni 628 (629)
T PLN02769 621 RFMDECNV 628 (629)
T ss_pred hHHhhCCC
Confidence 99999996
No 5
>PLN02742 Probable galacturonosyltransferase
Probab=100.00 E-value=1.2e-105 Score=964.94 Aligned_cols=461 Identities=51% Similarity=0.902 Sum_probs=442.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCC--CchHHHHHHHHHHHHHHhhh
Q 040435 212 ESPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAEL--PSSALNQAQAMGHVLSIAKD 289 (1991)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 289 (1991)
+-.++|+++|+|||||||||||++|||.+|+++|++||+++|||+||+||+|++|+++ ++++.+++|+|+++|++||+
T Consensus 68 ~~~~~~~~~~~l~dql~~Ak~y~~ia~~~~~~~l~~el~~~i~e~~~~l~~a~~d~~~~~~~~~~~~~~~m~~~i~~ak~ 147 (534)
T PLN02742 68 EMLSATSFSRQLADQITLAKAYVVIAKEHNNLQLAWELSAQIRNCQLLLSKAATRGEPITVEEAEPIIRDLAALIYQAQD 147 (534)
T ss_pred hhcChHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHHHh
Confidence 4489999999999999999999999999999999999999999999999999999996 48999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCC---cccccCCCCCCCCc
Q 040435 290 QLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHK---KEEQINEKFEDPSL 366 (1991)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 366 (1991)
.+|||+++++|||+||+++||+++++|+|++|++||||+|+|||||||+||||.|||.++.++ ++++..++++||++
T Consensus 148 ~~~d~~~~~~klr~~l~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~l 227 (534)
T PLN02742 148 LHYDSATTIMTLKAHIQALEERANAATVQSTKFGQLAAEALPKSLYCLGVRLTTEWFKNPKLQRKAEEKRNSPRLVDNNL 227 (534)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchHhHHHHHhCchhhhccccccccccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999884 44677889999999
Q ss_pred ceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 367 YHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 367 ~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+|+|++||||+|++|+|+|++.|+++|+++|||||||+.++.+|++||.+|++++++|+|+++++|.|++.+++++++||
T Consensus 228 ~Hy~ifSdNvlAasvvvnStv~nsk~P~~~VFHiVTD~~n~~aM~~WF~~n~~~~a~v~V~n~e~f~wl~~~~~pvl~ql 307 (534)
T PLN02742 228 YHFCVFSDNILATSVVVNSTVSNAKHPDQLVFHLVTDEVNYGAMQAWFAMNDFKGVTVEVQKIEEFSWLNASYVPVLKQL 307 (534)
T ss_pred ceEEEEeccchhhhhhhhhhHhhhcCCCcEEEEEeechhhHHHHHHHHhhCCCCccEEEEEEeccccccccccchHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeE
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNG 526 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~a 526 (1991)
++.....|+|.... .....+.++++|+|+|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|
T Consensus 308 ~~~~~~~~yf~~~~----~~~~~~~k~r~p~y~s~~~y~R~~lP~llp~l~KvlYLD~DvVV~~DL~eL~~~DL~~~via 383 (534)
T PLN02742 308 QDSDTQSYYFSGSQ----DDGKTEIKFRNPKYLSMLNHLRFYIPEIYPALEKVVFLDDDVVVQKDLTPLFSIDLHGNVNG 383 (534)
T ss_pred hhhhhhhhhccccc----ccccccccccCcccccHHHHHHHHHHHHhhccCeEEEEeCCEEecCChHHHhcCCCCCCEEE
Confidence 99999999998765 22345778999999999999999999999999999999999999999999999999999999
Q ss_pred eeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhh
Q 040435 527 AVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITF 606 (1991)
Q Consensus 527 aV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f 606 (1991)
||+||...++++..+++|++|.+..+++++.||||+|||||||++||++++|+.++.|++.+.+..+|+++.+++++++|
T Consensus 384 AVedC~~~f~ry~~yLnfS~p~i~~~f~~~aC~fNsGV~ViDL~~WRe~nITe~~~~w~e~n~~~~l~d~gaLpp~LLaF 463 (534)
T PLN02742 384 AVETCLETFHRYHKYLNFSHPLISSHFDPDACGWAFGMNVFDLVAWRKANVTAIYHYWQEQNVDRTLWKLGTLPPGLLTF 463 (534)
T ss_pred EeCchhhhhhhhhhhhcccchhhhccCCCCccccccCcEEEeHHHHHhhcHHHHHHHHHHhccccccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888889999999999999
Q ss_pred ccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccccc
Q 040435 607 YNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNL 676 (1991)
Q Consensus 607 ~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~ 676 (1991)
++++++||.+||+.|+|++.......+++++||||+|+.|||.+.+..+++++|++|++.++||+++||+
T Consensus 464 ~g~~~~LD~rWNv~gLG~~~~v~~~~i~~aaILHynG~~KPWl~~~i~~yr~~W~kYl~~s~~fl~~Cni 533 (534)
T PLN02742 464 YGLTEPLDRRWHVLGLGYDTNIDPRLIESAAVLHFNGNMKPWLKLAIERYKPLWERYVNYSHPYLQQCNF 533 (534)
T ss_pred cCcceecChhheecccccccccchhhccCCeEEEECCCCCcccccCCcccchHHHHHHccCCHHHHhCCC
Confidence 9999999999999999998877777889999999999999999999999999999999999999999996
No 6
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2e-100 Score=1045.23 Aligned_cols=554 Identities=50% Similarity=0.881 Sum_probs=462.2
Q ss_pred cccccccCCCCCCCccccCCCCCCCCCChhHHHHHHhhCcCC----CCCCCCCHHHHHHHHHHHHhhcccccCChhHHhh
Q 040435 1410 CAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSI----SGNVCCTETQFETLRAQVQQAIPFLVGCPACLRN 1485 (1991)
Q Consensus 1410 c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~----~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N 1485 (1991)
|+|||+||+.++++.+|||+++++++|+++.+++++++||++ .+++|||.+|+++|++||++++++++|||||+.|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 999999999998999999999999999999999999999974 3569999999999999999999999999999999
Q ss_pred HhhhccccccCcCCCcceEEEeecccCCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhhcCCC---cCCHHHH
Q 040435 1486 FLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFIGAG---AKSFKEW 1562 (1991)
Q Consensus 1486 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~~g~~---a~~~~~~ 1562 (1991)
|+++||+||||||||+||+||++.+.+++++|+++||||+++||+++|||||||+||++|++|||||||+ +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999987667789999999999999999999999999999999999999887 8999999
Q ss_pred HHhhcCCCCCCCCCCCeEEEeecCCCC-CCccccCCCCccCCCCC----CCCcccCCCCCCCCCCCCCCCCCCCCCCcee
Q 040435 1563 FAFIGQKAPPGFPGSPYAINFKLSIPE-SSGLELMNVSTYSCGDT----SLGCSCGDCPLSPMCSSSEPPSPPRKEACTI 1637 (1991)
Q Consensus 1563 l~flG~~~~~~~~~sPfqInf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~s~~C~~~~~~~~~~~~~~~~ 1637 (1991)
|+||||+++ +||||||||+++..+ +.+++|||..+++|+|+ .++|||+|||+| ||.+||+++ ++++|.
T Consensus 161 ~~f~G~~~~---~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~~--c~~~~~~~~-~~~~~~- 233 (1204)
T TIGR00917 161 IGQMAGVNN---PGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCS--CKAKPPTPP-KPSCSI- 233 (1204)
T ss_pred HHhcCCCCC---CCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchhh--CCCCCCCCC-CCCceE-
Confidence 999999853 489999999987633 44899999999999987 489999999986 987766433 234444
Q ss_pred EecCccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCC-cccccCC--CCCCCCCCcchhccccCCCCCCCCC
Q 040435 1638 RIGSLKVKCVELSLVIAYVVLISTFFGWALFQRTRERRIP-PSSV-EPLIKST--SDSGPDSGIMEEVNARDLLPTEGGG 1713 (1991)
Q Consensus 1638 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 1713 (1991)
+|++ +|++|+++++|+++++++++|.+..+.++++.+ ..+. ....+.. ..++.+.+ .. ...+. .
T Consensus 234 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~-~ 301 (1204)
T TIGR00917 234 -ILGV--DAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEINSSNNQSDQN------TP--QRNEG-Q 301 (1204)
T ss_pred -EEcC--cchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccc------cc--ccccc-h
Confidence 4655 899999999998877766655444332222211 1110 0000000 00111100 00 11112 3
Q ss_pred ccchHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEE
Q 040435 1714 LSVVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQ 1793 (1991)
Q Consensus 1714 ~~~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~q 1793 (1991)
.++++.+++++|++||.+|+||||++|+++++++++|++|+.++++||||++||+||+|++++|++|||++||||||++|
T Consensus 302 ~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~eq 381 (1204)
T TIGR00917 302 LATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQ 381 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccceEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCC-CCCCcccHHHHhhcCcCCCCCc-
Q 040435 1794 LILATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLG-EDCASQSVLQYFKMDPENYDSY- 1871 (1991)
Q Consensus 1794 vii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~-~~C~i~S~l~yf~~~~~~~~~~- 1871 (1991)
|||++++.+.....||||++++|++|++|++.|++++. + ++||+|+|+||++ ..|.++|+++|||++..+++..
T Consensus 382 vii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~--~--~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~~~ 457 (1204)
T TIGR00917 382 LIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA--N--LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPEN 457 (1204)
T ss_pred EEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc--c--CCChhccccccCCCCCCccCCHHHHhccChhhcCccc
Confidence 99998642211234699999999999999999999853 2 4899999999985 6899999999999987655432
Q ss_pred -------cCcccccccccccCCCccccccCCCCCCcccccCCccCCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHH
Q 040435 1872 -------GGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKA 1944 (1991)
Q Consensus 1872 -------~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~ 1944 (1991)
+|.+|+.+|.. +|++|++.||+|++|+.+|||++++++.+|+|+++||+++|+.+++ +..+.|.+||++
T Consensus 458 ~~~~~~~~~~~~~~~c~~---~p~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~~-~~~~~a~~WE~~ 533 (1204)
T TIGR00917 458 YDDGFGVDYVKYCFECFT---SPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNKT-DKLEKAVAWEKA 533 (1204)
T ss_pred ccccccccHHHhhhcccc---CcchhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCCc-hhhhHHHHHHHH
Confidence 35677788865 4568999999999999999999988999999999999999875443 235789999999
Q ss_pred HHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1945 FIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1945 f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
|+++++++.. .....+++++|+||+|++||+++++++|+|++++||
T Consensus 534 f~~~~~~~~~-~~~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isy 579 (1204)
T TIGR00917 534 FIQFAKNYLL-PNVQAKLDISFSSERSIEDELKRESTADVITILVSY 579 (1204)
T ss_pred HHHHHHHhhc-cccccceEEEEeccccHHHHHhhccchhHHHHHHHH
Confidence 9999998631 112236899999999999999999999999988764
No 7
>PLN02718 Probable galacturonosyltransferase
Probab=100.00 E-value=2e-97 Score=904.63 Aligned_cols=440 Identities=48% Similarity=0.876 Sum_probs=417.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhccC
Q 040435 213 SPNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLY 292 (1991)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1991)
..++|+++|+|||||||||||++|||.+++.+|++||+++|||+||+||+|+.|++||+++.+++++|+++|++||+.+|
T Consensus 160 ~~~~d~~v~~~~dql~~ak~y~~~a~~~~~~~~~~el~~~i~e~~~~l~~~~~d~~lp~~~~~~~~~m~~~~~~a~~~~~ 239 (603)
T PLN02718 160 RRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFP 239 (603)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHHHHHhccc
Confidence 47799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCcccccCCCCCCCCcceEEEE
Q 040435 293 DCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEEQINEKFEDPSLYHYAIF 372 (1991)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~hi~~~ 372 (1991)
||+++++|||+||+++||+++++|+|++|++||||+|+|||||||+||||+|||.++.+.++.|++++++||+++|||++
T Consensus 240 d~~~~~~klr~~~~~~e~~~~~~~~q~~~~~~laa~~~PK~lhCL~~rLt~ey~~~~~~~~~~~~~~~l~d~~~~Hia~~ 319 (603)
T PLN02718 240 NCPAIATKLRAMTYNTEEQVRAQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVF 319 (603)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHhhCChhhccCCChhhccCCcceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred cccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce
Q 040435 373 SDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK 452 (1991)
Q Consensus 373 ~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~ 452 (1991)
+||++|++|+|+|++.|+.+|.+++|||+||++++.+|+.||..+++.+++|++.++++|.|++.++.++++++++
T Consensus 320 sDNvlaasVvInSil~Ns~np~~ivFHVvTD~is~~~mk~wf~l~~~~~a~I~V~~Iddf~~lp~~~~~~lk~l~s---- 395 (603)
T PLN02718 320 SDNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMNVLPADYNSLLMKQNS---- 395 (603)
T ss_pred cCCceeEEEEhhhhhhccCCCCcEEEEEEeCCCCHHHHHHHHHhCCCCCcEEEEEecchhccccccchhhhhhccc----
Confidence 9999999999999999999999999999999999999999999999889999999999999999999998888842
Q ss_pred EEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccch
Q 040435 453 EYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCK 532 (1991)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~ 532 (1991)
..++++|+++|+||+||++||+++||||||+|+||++||++||++||+|+++|||+||.
T Consensus 396 ---------------------~~~~~~S~~~y~Rl~ipellp~l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~ 454 (603)
T PLN02718 396 ---------------------HDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCL 454 (603)
T ss_pred ---------------------cccccccHHHHHHHHHHHHhcccCEEEEEECCEEecCCHHHHhcCCCCCcEEEEecccc
Confidence 13578999999999999999999999999999999999999999999999999999997
Q ss_pred h---hhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc
Q 040435 533 E---SFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL 609 (1991)
Q Consensus 533 ~---~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~ 609 (1991)
. .+..+..+++|++|.+..++.+..||||+|||||||++||+++++++++.|++.+.+...|+.++++++|++|+++
T Consensus 455 ~~~~~~~~~~~~lnfs~p~i~~~fn~~~CyfNsGVlLIDLk~WReenITe~~~~~l~~n~~~~l~dqdaLpp~LlvF~gr 534 (603)
T PLN02718 455 EGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQKLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYNQ 534 (603)
T ss_pred ccccchhhhhhhhhccchhhhcccCCCccccccceEEEeHHHHHhcChHHHHHHHHHhccCccccCcccccHHHHHhcCc
Confidence 6 3455667788999988778899999999999999999999999999999999988777778888888889999999
Q ss_pred cccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 610 TYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 610 ~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
+++||.+||++++|++.......+++++||||+|+.|||.+.+...|+++|.|||+.|+||++.||+.
T Consensus 535 i~~LD~rWNv~gLG~~~~i~~~~i~~aaIIHYnG~~KPWle~~i~~yr~~W~k~v~~~~~~l~~Cn~~ 602 (603)
T PLN02718 535 TVALDKRWHVLGLGHESGVGASDIEQAAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602 (603)
T ss_pred eeecChHHhccCccccccccccccCCCEEEEECCCCCccccCChhhHHHHHHhhcCCCChHHHhcCCC
Confidence 99999999999999988776677899999999999999999999999999999999999999999974
No 8
>PLN02523 galacturonosyltransferase
Probab=100.00 E-value=7.8e-95 Score=870.32 Aligned_cols=462 Identities=49% Similarity=0.882 Sum_probs=426.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhcCccc-----hHHHHHHHHHH-----hhhhhcccC---CC----CCCCchHHHH
Q 040435 214 PNTDSTLKLMRDQIILAKAYAHVAKSKNESS-----LYNSLMKHCKE-----SQRAIGDAN---SD----AELPSSALNQ 276 (1991)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~~~---~~----~~~~~~~~~~ 276 (1991)
++.|.|.||..|++.++.||+++||+++.+. ++.+|++|+++ +.|++.+.. .| .+||.++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (559)
T PLN02523 78 TRLDQIRKQADDHRTLVNAYAAYARKLKLDNSKLLRLFADLSRNFTDLISKPSYRALLSSDGSAIDEDVLRQFEKEVKER 157 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhHHHHhhcCccccccccccCCcCchHHHhhcchhHHHH
Confidence 5779999999999999999999999999883 88899999997 334433311 11 3468899999
Q ss_pred HHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCc--c
Q 040435 277 AQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKK--E 354 (1991)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~--~ 354 (1991)
+|+|+++|++|| .+||++++++|||+||+++||+++++|+|++|++||||+|||||||||+||||+|||.++.++. +
T Consensus 158 ~k~~~~~~~~a~-~~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~~ 236 (559)
T PLN02523 158 VKVARQMIAESK-ESFDNQLKIQKLKDTIFAVNEQLTKAKKNGAFASLIAAKSIPKSLHCLAMRLMEERIAHPEKYKDEG 236 (559)
T ss_pred HHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccchhhHhHHHHHhChHhhhccC
Confidence 999999999999 5999999999999999999999999999999999999999999999999999999999998753 3
Q ss_pred cccCCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhh
Q 040435 355 EQINEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKW 434 (1991)
Q Consensus 355 ~~~~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~ 434 (1991)
++..++++||+++|+|++||||+|++|+|+|++.|+++|.+++||||||++|+.+|++||..+++.+++|+|++|++|+|
T Consensus 237 ~~~~~~l~dp~l~Hy~ifSdNvlAAsVvInStv~Ns~~p~~~VFHIVTD~ln~~amk~Wf~~n~~~~a~I~V~~Iedf~~ 316 (559)
T PLN02523 237 KPPPPELEDPSLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDRMNLAAMKVMFKMRDLNGAHVEVKAVEDYKF 316 (559)
T ss_pred CCcchhccCCCcceEEEecCcchhhhhhHHHHHHccCCCcceEEEEEeCCCCHHHHHHHHhhCCCCCcEEEEEEeehhhh
Confidence 55669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCch
Q 040435 435 LNSSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTP 514 (1991)
Q Consensus 435 l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~ 514 (1991)
++++++++++|+++.....|+|........ ....+.++++|+|+|+++|+|||||++||+++||||||+|+||++||++
T Consensus 317 ln~~~~pvlk~l~s~~~~~~~f~~~~~~~~-~~~~~~k~~~p~ylS~~ny~Rf~IPeLLP~ldKVLYLD~DVVVq~DLse 395 (559)
T PLN02523 317 LNSSYVPVLRQLESANLQKFYFENKLENAT-KDSSNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTG 395 (559)
T ss_pred cccccchHHHhhhhhhhhhhhccccccccc-cccccccccCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEecCCHHH
Confidence 999999999999999999999987554333 4457889999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhcccc
Q 040435 515 LWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLW 594 (1991)
Q Consensus 515 L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~ 594 (1991)
||++||+|+++|||+||...++++..+++|++|.+..+|++..||||+|||||||++||++++|++++.|++.+.+...|
T Consensus 396 Lw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~wnsGVmlINL~~WRe~nITek~~~w~~ln~~~~l~ 475 (559)
T PLN02523 396 LWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACAWAYGMNIFDLDAWRREKCTEQYHYWQNLNENRTLW 475 (559)
T ss_pred HHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCcccccCCcEEEeHHHHHHhchHHHHHHHHHhccccccc
Confidence 99999999999999999777788889999999999889999999999999999999999999999999999877777778
Q ss_pred ccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhhhhhhcccc
Q 040435 595 KLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTW 674 (1991)
Q Consensus 595 ~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~c 674 (1991)
+++.++++|++|++++++||.+||++++|+++......+++|+||||+|+.|||.+.+..+++++|++|++.|++|++.|
T Consensus 476 DqdaLpp~LivF~gri~~LD~rWNvlglGy~~~i~~~~i~~paIIHYnG~~KPWle~~i~~yr~~W~kYl~~~~~fl~~C 555 (559)
T PLN02523 476 KLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVIHFNGNMKPWLDIAMNQFKPLWTKYVDYDMEFVQAC 555 (559)
T ss_pred cccccchHHHHhcCceEecCchhhccCCccCCCccccccCCCEEEEECCCCCccccCCCCcchHHHHHHHccCCHHHHhC
Confidence 88888888999999999999999999999988777777899999999999999999999999999999999999999999
Q ss_pred ccc
Q 040435 675 NLR 677 (1991)
Q Consensus 675 n~l 677 (1991)
|+-
T Consensus 556 n~~ 558 (559)
T PLN02523 556 NFG 558 (559)
T ss_pred CCC
Confidence 973
No 9
>PLN02870 Probable galacturonosyltransferase
Probab=100.00 E-value=2.9e-93 Score=855.14 Aligned_cols=412 Identities=41% Similarity=0.798 Sum_probs=372.2
Q ss_pred hhcccCCCCCCCchHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccch
Q 040435 259 AIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLP 338 (1991)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~ 338 (1991)
.-+||+.|++||+++ ++++.+||+.+|||+++++|||+||+++||+++++|+|++|++||||+|||||||||+
T Consensus 103 ~~~~~~~d~~lp~s~-------~~~~~~~~~~~~d~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~laa~t~PK~lHCL~ 175 (533)
T PLN02870 103 NTEEIPDGLKLPDSF-------SQLVSDMKNNHYDAKTFAFVLRAMMEKFERELRESKFAELMNKHFAASSIPKGIHCLS 175 (533)
T ss_pred ccccccccccCChhH-------HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccc
Confidence 357899999999999 4555589999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCCCCccccc---CCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHH
Q 040435 339 LQLAADYYLQGHHKKEEQI---NEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFL 415 (1991)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~ 415 (1991)
||||+|||.++.++.+.++ .++++||+++|+|++||||+|+||+|+|++.|+++|+++|||||||++|+.+|++||.
T Consensus 176 mrLt~ey~~~~~~~~~~~~~e~~~~l~dp~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VFHvvTD~~n~~aM~~WF~ 255 (533)
T PLN02870 176 LRLTDEYSSNAHARKQLPSPELLPVLSDNSYHHFVLSTDNILAASVVVSSTVQSSLKPEKIVFHVITDKKTYAGMHSWFA 255 (533)
T ss_pred hhhHHHHHhCchhhhcCCcccccccccCCcceeEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHh
Confidence 9999999999988766554 4599999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce-EEEecCCCCCCCcC------CcCCcccCCCCcchhhhHHHHh
Q 040435 416 VNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK-EYYFKANHPSSLSA------GSDNLKYRNPKYLSMLNHLRFY 488 (1991)
Q Consensus 416 ~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~~y~Rl~ 488 (1991)
.||+++++|||+++|+|+||+.+++|+|+|+++.+.. .|+|.......... ...+.++++|+|+|+++|+|||
T Consensus 256 ~n~~~~a~v~V~~~e~f~wl~~~~~pvl~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~lny~Rl~ 335 (533)
T PLN02870 256 LNSVSPAIVEVKGVHQFDWLTRENVPVLEAVESHNGIRNYYHGNHIAGANLSETTPRTFASKLQARSPKYISLLNHLRIY 335 (533)
T ss_pred hCCCccceEEEEehhhccccccccchHHHHHhhhHHHHHHhhcccccccccccccchhhhcccccCCccccCHHHHHHHH
Confidence 9999999999999999999999999999999998774 44444333222111 1347889999999999999999
Q ss_pred hcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhh-----hccccccccCCCccccCCCCCCCcccccc
Q 040435 489 LPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKES-----FHRFDKYLNFSNPLISENFSPNACGWAFG 563 (1991)
Q Consensus 489 ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~yfNsG 563 (1991)
||++||+++||||||+|+||++||++||++||+|+++|||+||... .+++..|+||++|.+..+++++.||||||
T Consensus 336 LPelLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~fd~~~cyfNSG 415 (533)
T PLN02870 336 LPELFPNLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNLDPEECAWAYG 415 (533)
T ss_pred HHHHhhhcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhcccCcccceeecc
Confidence 9999999999999999999999999999999999999999998542 35667899999999999999999999999
Q ss_pred eeEeehHHHHHhhHHHHHHHHHHhchhc--cccccCCCCchhhhhccccccccccccccccCCCccccccccCCceEeec
Q 040435 564 MNMFDLKEWRKRNITGIYHYWQDANEDR--TLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHY 641 (1991)
Q Consensus 564 Vll~nl~~wR~~~~~~~~~~~~~~~~~~--~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY 641 (1991)
||||||++||+++++++++.|++.+... ..|+++.++++|++|++++++||.+||++++||+.......+++++||||
T Consensus 416 VlLINL~~WRe~nITek~~~~l~~n~~~~l~l~DQdaLp~~livf~g~v~~LD~rWN~~gLgy~~~~~~~~i~~aaIIHY 495 (533)
T PLN02870 416 MNIFDLRAWRKTNIRETYHSWLKENLKSNLTMWKLGTLPPALIAFKGHVHPIDPSWHMLGLGYQSKTNIESVKKAAVIHY 495 (533)
T ss_pred chhccHHHHHHcChHHHHHHHHHhhhhcCceecccccccHhHHHhcCceEECChHHhcCCCCCcccccccccCCcEEEEE
Confidence 9999999999999999999999876432 33444445555899999999999999999999988766677889999999
Q ss_pred ccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 642 NGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 642 ~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
+|+.|||++++...++.+|.+|++.+++|+++||+.
T Consensus 496 ~G~~KPW~~~~~~~yr~~W~kYl~~s~~fl~~Cni~ 531 (533)
T PLN02870 496 NGQSKPWLEIGFEHLRPFWTKYVNYSNDFIRNCHIL 531 (533)
T ss_pred CCCCCCccccCccchhHHHHHHHccCchHhhhcCCC
Confidence 999999999999999999999999999999999986
No 10
>PLN02867 Probable galacturonosyltransferase
Probab=100.00 E-value=3.8e-91 Score=842.03 Aligned_cols=423 Identities=35% Similarity=0.621 Sum_probs=376.5
Q ss_pred HHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCc
Q 040435 254 KESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRP 333 (1991)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (1991)
+|-+|+++||+.|.++|..+.+++++|++++++||+.+|||+++++|||||||++||+++++|+|++|++||||+|||||
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~kl~am~~~~e~~~~~~~~~~~~~~~laa~t~PK~ 175 (535)
T PLN02867 96 EELTRALVEAKEQDDGGRGTKGSTESFNDLVKEMTSNRQDIKAFAFRTKAMLLKMERKVQSARQRESIYWHLASHGIPKS 175 (535)
T ss_pred HHHHHHHHHhhhccccCcchhhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHHHhhcCCCCcccccCC---CCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHH
Q 040435 334 LHCLPLQLAADYYLQGHHKKEEQINE---KFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAM 410 (1991)
Q Consensus 334 ~~cl~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~ 410 (1991)
||||+||||+|||.++.++++.|+++ +++||+++|+|++||||+|+||+|+|++.|+++|+++|||||||++|+.+|
T Consensus 176 lHCL~mrLt~ey~~~~~~~~~~~~~~~~~~l~d~~~~Hy~ifSdNvLAasVvvnStv~~a~~p~~~VfHvvTD~~ny~aM 255 (535)
T PLN02867 176 LHCLCLKLAEEYAVNAMARSRLPPPESVSRLTDPSFHHVVLLTDNVLAASVVISSTVQNAANPEKLVFHIVTDKKTYTPM 255 (535)
T ss_pred ccccchhhHHHHHhCchhhccCCChhhhhhccCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHH
Confidence 99999999999999998877665444 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHhhccce-EEEecCC---CCCCCcCCcCCcccCCCCcchhhhHHH
Q 040435 411 KMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLESARLK-EYYFKAN---HPSSLSAGSDNLKYRNPKYLSMLNHLR 486 (1991)
Q Consensus 411 ~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~y~R 486 (1991)
++||..||+++++|||+++|+|+|++.+++++++++++.+.. .++|... ..........+.++++|+|+|+++|+|
T Consensus 256 ~~WF~~n~~~~a~v~V~~~~~f~wl~~~~~~v~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkylS~lnYlR 335 (535)
T PLN02867 256 HAWFAINSIKSAVVEVKGLHQYDWSQEVNVGVKEMLEIHRLIWSHYYQNLKESDFQFEGTHKRSLEALSPSCLSLLNHLR 335 (535)
T ss_pred HHHHhhCCCccceEEEEeehhccccccccccHHHHHHHhhhhhhhhhccccccccccccccccchhhcChhhhhHHHHHH
Confidence 999999999999999999999999999999999999886643 1121110 000001122467789999999999999
Q ss_pred HhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchh--h---hccccccccCCCccccCCCCCCCcccc
Q 040435 487 FYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKE--S---FHRFDKYLNFSNPLISENFSPNACGWA 561 (1991)
Q Consensus 487 l~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~yfN 561 (1991)
|+||++||+++||||||+|+||++||++||++||+|+++|||.|..+ . ..++..|++|++|.+..++++..||||
T Consensus 336 flIPeLLP~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfsnp~i~~~~~p~~cYFN 415 (535)
T PLN02867 336 IYIPELFPDLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFSHPLISSNLDQERCAWL 415 (535)
T ss_pred HHHHHHhhccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhccccchhhhccCCCCCccee
Confidence 99999999999999999999999999999999999999999977422 1 245677999999998888999999999
Q ss_pred cceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchh---hhhccccccccccccccccCCCcccc-ccccCCce
Q 040435 562 FGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGL---ITFYNLTYPLDRSWHVLGLGYDPALN-LTQIDNGA 637 (1991)
Q Consensus 562 sGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n---~~f~~~~~~L~~~wN~~~~~~~~~~~-~~~~~n~~ 637 (1991)
||||||||++||+++++++++.|++.+... ...+.|||.+| ++|++++++||.+||+.++|++.... ...+++|+
T Consensus 416 SGVmLINL~~WRe~nITek~~~~Le~n~~~-~~~l~dqd~LN~~LlvF~g~v~~LD~rWNv~gLgy~~~~~~~~~i~~pa 494 (535)
T PLN02867 416 YGMNVFDLKAWRRTNITEAYHKWLKLSLNS-GLQLWQPGALPPALLAFKGHVHPIDPSWHVAGLGSRPPEVPREILESAA 494 (535)
T ss_pred cceeeeeHHHHHHhcHHHHHHHHHHhchhc-ccccccccccchHHHHhcCcEEECChhhcccCCCcccccchhhhcCCcE
Confidence 999999999999999999999999987542 13345666666 59999999999999999988876432 24468999
Q ss_pred EeecccCCCccccccccccccccchhhhhhhhhccccccc
Q 040435 638 VVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 638 IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l~~cn~l 677 (1991)
||||+|+.|||++++..+++++|.+|++.+.+|+|.||++
T Consensus 495 IIHYnG~~KPW~e~~~~~yR~~W~kyl~~~~~fl~~cni~ 534 (535)
T PLN02867 495 VLHFSGPAKPWLEIGFPEVRSLWYRHVNFSDKFIRKCRIM 534 (535)
T ss_pred EEEECCCCCcccccCCCchhHHHHHhcCccchHHHhcccC
Confidence 9999999999999999999999999999999999999986
No 11
>PLN02659 Probable galacturonosyltransferase
Probab=100.00 E-value=5.9e-91 Score=835.41 Aligned_cols=401 Identities=37% Similarity=0.704 Sum_probs=363.8
Q ss_pred HHHHHHHHHHHhhhccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCCCccc
Q 040435 276 QAQAMGHVLSIAKDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHHKKEE 355 (1991)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~~~~~ 355 (1991)
.+..+++++.+||+.+|||+++++|||+||+++||+++++|+|+.+++||||+|+|||||||+||||+|||.++.++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~d~~~~~~klr~~l~~~E~~~~~~k~~~~~~~~laa~t~PK~lHCL~mrLt~ey~~~~~~~~~~ 193 (534)
T PLN02659 114 IPQTLEEFMDEVKNSRSDARAFALKLREMVTLLEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQL 193 (534)
T ss_pred cchHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCchhhhcc
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999887665
Q ss_pred cc---CCCCCCCCcceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchh
Q 040435 356 QI---NEKFEDPSLYHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSF 432 (1991)
Q Consensus 356 ~~---~~~~~~~~~~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f 432 (1991)
++ .++++||+++|+|++||||+|+||||+|++.|+++|+++|||||||++|+.+|++||..||+++|+|||+++|+|
T Consensus 194 ~~~~~~~~l~d~~l~Hy~ifSdNvLAasVVvnStv~~a~~p~~~VFHivTD~~ny~aM~~WF~~n~~~~a~v~V~~~e~f 273 (534)
T PLN02659 194 PLAELVPALVDNSYFHFVLASDNILAASVVANSLVQNALRPHKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHF 273 (534)
T ss_pred CCcccccccCCCCcceEEEEecceeEEEeeeehhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEEeehhc
Confidence 43 348999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHhhccceEEEecCCCCCCCc-------CCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCC
Q 040435 433 KWLNSSYCSVLRQLESARLKEYYFKANHPSSLS-------AGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDD 505 (1991)
Q Consensus 433 ~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~D 505 (1991)
+||+.+|+|+++||++.....++|..+...... ....+.++++|+|+|+++|+||+||++||+++||||||+|
T Consensus 274 ~wl~~~~~pvl~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~ylS~~nY~RL~IPeLLP~LdKVLYLD~D 353 (534)
T PLN02659 274 DWFAKGKVPVLEAMEKDQRVRSQFRGGSSAIVANNTEKPHVIAAKLQALSPKYNSVMNHIRIHLPELFPSLNKVVFLDDD 353 (534)
T ss_pred ccccccccHHHHHHhhhhhhhhhhcccccccccccccCccccccccccCCccceeHHHHHHHHHHHHhhhcCeEEEeeCC
Confidence 999999999999999988888888754432111 1134678899999999999999999999999999999999
Q ss_pred EeEecCCchhhccCCCCCeeEeeccchhh-----hccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHH
Q 040435 506 IVVQKDLTPLWSVDLHGMVNGAVETCKES-----FHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGI 580 (1991)
Q Consensus 506 ivv~~dl~~L~~~dl~~~~~aaV~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~ 580 (1991)
+||++||++||++||+|+++|||+||... ..++..++++++|.+..++++..||||||||||||++||+++++++
T Consensus 354 VVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek 433 (534)
T PLN02659 354 IVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFSHPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISST 433 (534)
T ss_pred EEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhcccchhhhhccCccccceecceeEeeHHHHHhcChHHH
Confidence 99999999999999999999999998532 2567788899999998899999999999999999999999999999
Q ss_pred HHHHHHhchhccccccCCCCch---hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccc
Q 040435 581 YHYWQDANEDRTLWKLGTLPPG---LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYK 657 (1991)
Q Consensus 581 ~~~~~~~~~~~~~~~~~dqd~~---n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~ 657 (1991)
++.|++.+.+. ...+.|||++ |++|++++++||.+||++++|++.......+++++||||+|+.|||++++..+++
T Consensus 434 ~l~~l~~n~~~-~l~l~DQdaLp~~LivF~g~v~~LD~rWN~~gLg~~~~~~~~~i~~paIIHYnG~~KPW~~~~~~~yr 512 (534)
T PLN02659 434 YHHWLEENLKS-DLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAESAGVVHFNGRAKPWLDIAFPQLR 512 (534)
T ss_pred HHHHHHhcccc-cccccccccchHHHHHhcCCEEECChhheecCCcccccccccccCCcEEEEECCCCCccccccCCcch
Confidence 99999876432 1334455555 7999999999999999999999877666678899999999999999999999999
Q ss_pred cccchhhhhhhhhccccccc
Q 040435 658 PYWSKYVILWSLRLRTWNLR 677 (1991)
Q Consensus 658 ~~W~~yv~~d~p~l~~cn~l 677 (1991)
++|.||++.++||+++||++
T Consensus 513 ~~W~kYl~~s~~fl~~Cni~ 532 (534)
T PLN02659 513 PLWAKYIDSSDKFIKSCHIR 532 (534)
T ss_pred hHHHHHhccCCHHHHhcCCC
Confidence 99999999999999999986
No 12
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=7.3e-85 Score=847.88 Aligned_cols=538 Identities=39% Similarity=0.706 Sum_probs=458.7
Q ss_pred cccccccccCCCCCCCccccCCCCC-CCCCChhHHHHHHhhCcCCCC---CCCCCHHHHHHHHHHHHhhcccccCChhHH
Q 040435 1408 EYCAMYDICGERSDGKVLNCPYGSP-SVKPDELFSAKIESLCPSISG---NVCCTETQFETLRAQVQQAIPFLVGCPACL 1483 (1991)
Q Consensus 1408 ~~c~~~~~Cg~~~~~~~l~c~~~~~-~~~~~~~~~~~l~~~Cp~~~~---~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~ 1483 (1991)
++|+|||.||++...+.+||+++.| +.+........++..||.+.+ .+||++.|+++|++++++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5899999999998778999999998 777777888999999999865 499999999999999999999999999999
Q ss_pred hhHhhhccccccCcCCCcceEEEeecccCCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhh-c-CCCcCCHHH
Q 040435 1484 RNFLNLFCELSCSPNQSQFINVTSVSEVNGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDF-I-GAGAKSFKE 1561 (1991)
Q Consensus 1484 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~-~-g~~a~~~~~ 1561 (1991)
+||.++||+||||||||.|++|+.+..- .|++++|+++.+|++++|+|||+|+|+++|++||++ + |++++++++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999987432 299999999999999999999999999999999996 4 667788999
Q ss_pred HHHhhcCCCCCCCCCCCeEEEeecCCCCCCccccCCCCccCCCCCC-CCcccCCCCCCCCCCCCCCCCCCCCCCceeEec
Q 040435 1562 WFAFIGQKAPPGFPGSPYAINFKLSIPESSGLELMNVSTYSCGDTS-LGCSCGDCPLSPMCSSSEPPSPPRKEACTIRIG 1640 (1991)
Q Consensus 1562 ~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~s~~C~~~~~~~~~~~~~~~~~i~ 1640 (1991)
|+.|+|+++| + +++||+|+|+...+.+..+.|||...++|++.+ ++|+|+|||++ |+...+++.|. +++.+|
T Consensus 157 ~~~f~g~~~~-~-~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~~--c~~~~~~~~~~---~~~~v~ 229 (1201)
T KOG1933|consen 157 WLEFIGDKNP-G-QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPET--CPASLLLKSPT---ETFVVG 229 (1201)
T ss_pred HHHHhcCCCc-c-CCCcceeccccccCCccceeecccccccCCcccccccchhcchhh--cCccccCCCCc---cceeec
Confidence 9999999874 2 579999999998765555999999999999874 99999999976 98876654442 277889
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCcccccCCCCCCCCCCcchhccccCCCCCCCCCccchHHH
Q 040435 1641 SLKVKCVELSLVIAYVVLISTFFGWALFQRTRERRIPPSSVEPLIKSTSDSGPDSGIMEEVNARDLLPTEGGGLSVVQGY 1720 (1991)
Q Consensus 1641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1720 (1991)
++.+.++.+++.++|.+++++|+++......+.+.+... .... .+. .......+|.+
T Consensus 230 ~~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~------~~~~---~~~--------------~~~~~~~~~~~ 286 (1201)
T KOG1933|consen 230 GIPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGD------DGTP---VDS--------------SPTSDFSTETF 286 (1201)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccc------cCcc---ccC--------------CcccchhHHHH
Confidence 885555555777788888888887765532221111100 0000 000 00001248999
Q ss_pred HHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCC
Q 040435 1721 MLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLP 1800 (1991)
Q Consensus 1721 l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~ 1800 (1991)
++.+|++||.+|++||.+++.+++.+++.||.|++++.++||||+||+.|+|++|.||+|||.|||||||++|+||++.+
T Consensus 287 l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi~l~~~~ 366 (1201)
T KOG1933|consen 287 LEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQIILTAVN 366 (1201)
T ss_pred HHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhheeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCCC--CCCcccHHHHhhcCcCCCC--------C
Q 040435 1801 DPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLGE--DCASQSVLQYFKMDPENYD--------S 1870 (1991)
Q Consensus 1801 ~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~~--~C~i~S~l~yf~~~~~~~~--------~ 1870 (1991)
.+... .++++..+.|++++++|+.|.++.+..+ +++|+|+|++|+++ +|+++|++||||++.++++ .
T Consensus 367 ~~~~~-~~~i~~~~~l~~vldiq~~v~~~~~~~~--~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~~~~~~~ 443 (1201)
T KOG1933|consen 367 TSSEV-YPPILLVEGLELVLDIQNSVKELLTSSD--NISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKLNDSFFM 443 (1201)
T ss_pred Ccccc-CCchHHHHHHHHHHHHHHHHHHhccCCC--ccchheeeeeeccCCcchhhhhhHhhhccChhhhhccccccchh
Confidence 54332 2379999999999999999999987653 78999999999974 5899999999999887543 1
Q ss_pred ccCcccccccccccCCCccccccCCCCCCcccccCCccCCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHHHHHH
Q 040435 1871 YGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFSGNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFIQLAK 1950 (1991)
Q Consensus 1871 ~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~~~~~ 1950 (1991)
++|.+|+.+|.++|. +|+++||+|++|..++||+.+.++..|+|+++||+++|+..+... +++|.+||++|+++++
T Consensus 444 ~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~~-~~~a~~We~~f~~~~~ 519 (1201)
T KOG1933|consen 444 DFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPEL-TDQAVAWEKAFVNFAK 519 (1201)
T ss_pred hHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcch-hhHHHHHHHHHHHHHH
Confidence 368899999999776 799999999999999999987678999999999999999776544 6899999999999999
Q ss_pred hhhccccCCCCeE-EEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1951 EELLPMVQSSNLT-LSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1951 ~~~~~~~~~~~l~-vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
++ ..+.+. ++|++|||++|||++.+..|+.+++|||
T Consensus 520 ~~-----~~~~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy 556 (1201)
T KOG1933|consen 520 DY-----LLPHLLAISFMAERSIEDEINRESEGDVITVVISY 556 (1201)
T ss_pred HH-----hhhccchheeeccCccchhhccCCcCCceEEEeeh
Confidence 98 344555 8999999999999999999999999986
No 13
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-77 Score=805.96 Aligned_cols=602 Identities=27% Similarity=0.458 Sum_probs=562.4
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH
Q 040435 868 CERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGN 947 (1991)
Q Consensus 868 ~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~n 947 (1991)
..++.++|+.+|.++.+.|++++|+++|..|....+..||..||+.++.+|++.++++.|+++|..|.+.|+.||..++|
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999999865688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhh
Q 040435 948 SLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPME 1027 (1991)
Q Consensus 948 aLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~ 1027 (1991)
+|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCC
Q 040435 1028 CKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEK 1107 (1991)
Q Consensus 1028 a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~ 1107 (1991)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHH
Q 040435 1108 PNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYG 1187 (1991)
Q Consensus 1108 Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~ 1187 (1991)
||..||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
+++++|+ ..|+..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|+..|+|++|.++++.|+++|++
T Consensus 483 ~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 483 AMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 9999998 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHHHhhccccccccccc-------ccccccccccccccccccCCCC
Q 040435 1348 VVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTDTLLIKD-------VTSSERHSKEYCAMYDICGERS 1420 (1991)
Q Consensus 1348 k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~~~~~~d-------vts~~~~~~~~c~~~~~Cg~~~ 1420 (1991)
|.||+|||++++++|.|++||.+ ||+.++||..+..+...+...++.++ ++..++ -...|+|+
T Consensus 561 k~~g~s~i~~~~~~~~f~~~d~~--h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~-------~~~~~~hs- 630 (697)
T PLN03081 561 MHPACTWIEVKKQDHSFFSGDRL--HPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEE-------KVSGRYHS- 630 (697)
T ss_pred cCCCeeEEEECCeEEEEccCCCC--CccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHH-------HHHHHhcc-
Confidence 99999999999999999999976 78999999877766665554444343 322111 11223344
Q ss_pred CCCccccCCCCCCCCCChhH-HHHHHhhCcCCCCCCCCCHHHHHHHHHHHHhhcccccCChhHHhhHhhhccc
Q 040435 1421 DGKVLNCPYGSPSVKPDELF-SAKIESLCPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNFLNLFCE 1492 (1991)
Q Consensus 1421 ~~~~l~c~~~~~~~~~~~~~-~~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N~~~~~C~ 1492 (1991)
++|+.+|+....|++.+. ..++.++|+ .|.+.-.+-.. + .-+.++-|=+.+++.|.+--|.
T Consensus 631 --ekla~a~~l~~~~~~~~i~i~knlr~c~-----dch~~~k~~s~---~-~~r~i~~rd~~rfh~f~~g~cs 692 (697)
T PLN03081 631 --EKLAIAFGLINTSEWTPLQITQSHRICK-----DCHKVIKFIAL---V-TKREIVVRDASRFHHFKLGKCS 692 (697)
T ss_pred --HHHHHHhhCccCCCCCeEEEecCCEECC-----CchhhHHHHhh---h-cceEEEEecCCccccCCCCccc
Confidence 789999999888887666 488899999 89988764322 2 2266888999999999998883
No 14
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-73 Score=788.76 Aligned_cols=612 Identities=26% Similarity=0.420 Sum_probs=581.5
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040435 768 ICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS 847 (1991)
Q Consensus 768 ~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na 847 (1991)
..++..++|.+|.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..++..++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 040435 848 VLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTM 926 (1991)
Q Consensus 848 Li~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~ 926 (1991)
||++|++ |+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||.+||+++|++|+..+++..
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhh
Confidence 9999999 99999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 040435 927 GRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNE 1006 (1991)
Q Consensus 927 a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~ 1006 (1991)
++++|..+++.|+.||..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|...|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhh
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~ 1086 (1991)
||..||+++|.+|++.++++.|+++|..+.+.|+.||..+||+||.+|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRK 1166 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~ 1166 (1991)
+.|++++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1167 AFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1167 lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
+|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.++.|.+++..|.+ .|+.++
T Consensus 446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~ 523 (857)
T PLN03077 446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFD 523 (857)
T ss_pred HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCcc
Confidence 99999999999999999999999999999999999986 6999999999999999999999999999999975 699999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc--CCCCchHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL--EAQNSAGYLLASSM 1324 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel--~P~~~~~yvlL~~l 1324 (1991)
..++++||++|+|+|++++|.++|++| .||..+|++|+.+|.++|+.++|.+++++|.+. .| +..+|..+...
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a 598 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCA 598 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHH
Confidence 999999999999999999999999998 479999999999999999999999999999884 45 45668889999
Q ss_pred HHhCCCchhHHHHHHHHH-HcCCcccCcEEEEEEcC--------eEeEEEcCCCCCCCCchhHHHHHHHHhhccccc
Q 040435 1325 YAAGGLWVESSGTRLLAK-ERGVKVVAGNSLVHVDN--------KACKFIAGEKAQSHPRGSEVILLACLVTAEKTD 1392 (1991)
Q Consensus 1325 ya~~G~~~ea~~vr~~m~-~~gi~k~~g~s~i~v~~--------~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~ 1392 (1991)
|++.|+++++.++...|+ ++|++|...++.+.|+. ++..|+..++..| +...|..++.+|..+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-----d~~~~~aLl~ac~~~ 670 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP-----DPAVWGALLNACRIH 670 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHc
Confidence 999999999999999998 89999999999988873 2344444443322 334566666666543
No 15
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.3e-60 Score=639.09 Aligned_cols=526 Identities=15% Similarity=0.163 Sum_probs=478.9
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCCh-----HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 040435 737 YESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDS-----VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILV 811 (1991)
Q Consensus 737 ~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~-----~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~ 811 (1991)
-.++...+..++..|+++|++++|+++|++|+.++. ..++.++.+|.+.|..++|+.+|+.|.. ||..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 356677888999999999999999999999987654 4566777889999999999999999974 9999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcC
Q 040435 812 LVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMC----ERDVISWSVMIGGYVQSA 886 (1991)
Q Consensus 812 ~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~----~~d~~syn~LI~a~~~~G 886 (1991)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|++ |+++.|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999 99999999999996 589999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 040435 887 EAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY--RGLGCDLFVGNSLIDMYAKCKDTDSAFK 964 (1991)
Q Consensus 887 ~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k--~g~~pd~~v~naLI~~y~k~G~~e~A~~ 964 (1991)
++++|+++|.+|.+. |+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.+
T Consensus 522 ~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 522 QVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999987 8999999999999999999999999999999987 6799999999999999999999999999
Q ss_pred HhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcC
Q 040435 965 VFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAF 1040 (1991)
Q Consensus 965 lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~ 1040 (1991)
+|+.|.+ ++.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|..|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999985 577999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHHhcC----CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1041 ESNELVLNSLIDGYSKCHLVELAWKLFNDVK----KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1041 ~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~----~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
.|+..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999996 599999999999999999999999999999999999999999999
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHH----HhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCH
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY----AKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLA 1192 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y----~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~ 1192 (1991)
|.+|++.|+++.|.++|..|.+.|+.||..+|++|+.+| .+++...++...|+.+...+...|+
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------ 828 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------ 828 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------
Confidence 999999999999999999999999999999999999874 3444444444444443333334444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
++|+.+|++|++.|+.||..||+.+|.++...+..+.+..+++.|. ..+..|+..+|++||+++++. .++|..++++
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 5699999999999999999999999977777788888888777774 235677789999999988543 4789999999
Q ss_pred Ccc-CCCCCHH
Q 040435 1273 MPD-NLKATAS 1282 (1991)
Q Consensus 1273 m~~-~~~pd~~ 1282 (1991)
|.. ++.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 987 4677653
No 16
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-60 Score=639.91 Aligned_cols=467 Identities=24% Similarity=0.373 Sum_probs=424.0
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040435 769 CRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAG-FEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS 847 (1991)
Q Consensus 769 ~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~g-i~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na 847 (1991)
.++.++|+++|.+|.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 040435 848 VLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTM 926 (1991)
Q Consensus 848 Li~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~ 926 (1991)
|+.+|++ |+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHH
Confidence 9999999 99999999999999999999999999999999999999999999987 899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 040435 927 GRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNE 1006 (1991)
Q Consensus 927 a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~ 1006 (1991)
|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhh
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~ 1086 (1991)
||..||++++.+|++.|.++.|+++|+.|.+.|+.+|..++|+||++|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHH-hccccchhHHHHHHHHHHhcCCHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIR-RCLAEEVAVGTAVVDMYAKCGAIEASR 1165 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k-~g~~~d~~v~naLI~~y~k~G~~e~A~ 1165 (1991)
++|+.++|+++|++|.+.|+.||..||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+.+|++|++.|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 588888878877777777777777777
Q ss_pred HHHHhcc-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1166 KAFDQIS-RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1166 ~lf~~m~-~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
++|++|. +|+..+|++|+.+|..+|+.+.|..++++|.+ +.|+ ..+|..++..|++.|++++|.++++.|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~ 555 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7776664 35666666666666666666666666665543 3342 3455555555666666666666665553
No 17
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-55 Score=593.42 Aligned_cols=529 Identities=11% Similarity=0.114 Sum_probs=481.4
Q ss_pred CCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCC-CCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHH
Q 040435 705 NDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGY-ESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGH 782 (1991)
Q Consensus 705 ~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~-~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~ 782 (1991)
++...|..++..|.+.+ +..+.+++..|.+.|+ .++..+++.++.+|.+.|.+++|.++|+.|+.||..+||.||.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35556777777777666 7889999999999996 577888899999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHH
Q 040435 783 LDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECAR 861 (1991)
Q Consensus 783 ~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~ 861 (1991)
++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++++.|.+.|+.||..+|++||.+|++ |++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHhcC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 040435 862 KLFDEMC----ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG-FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY 936 (1991)
Q Consensus 862 ~vf~~m~----~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~-~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k 936 (1991)
++|++|. .||.++||.||.+|++.|++++|+++|.+|... .|+.||..||+++|.+|++.|+++.|.++|+.|.+
T Consensus 528 ~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e 607 (1060)
T PLN03218 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999993 589999999999999999999999999999863 37999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITL 1012 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~ 1012 (1991)
.|+.|+..+|++||.+|++.|++++|.++|++|.+ ||.++|++||.+|++.|+.++|.++|++|.+.|+.||..+|
T Consensus 608 ~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 608 YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999984 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----CchhhhhHHHHhhhhc
Q 040435 1013 VNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVLWSTMIAGFTLC 1088 (1991)
Q Consensus 1013 ~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~syn~LI~~y~~~ 1088 (1991)
+++|.+|++.|++++|.++|..|.+.|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999974 9999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1089 GRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAF 1168 (1991)
Q Consensus 1089 g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf 1168 (1991)
|+.++|.++|.+|.+.|+.||..+|++++..|.+ .++++..+...+.... . ...+...+..+.|..+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~---------~-g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD---------S-GRPQIENKWTSWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh---------c-cccccccchHHHHHHHH
Confidence 9999999999999999999999999999977653 3444443333222111 0 01111223456799999
Q ss_pred HhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 040435 1169 DQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVE 1244 (1991)
Q Consensus 1169 ~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~ 1244 (1991)
++|.+ ||.++|+.++.+++..+..+.+..++++|...+..|+..+|++||.+|++. .++|..+|++|.+ .|+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~-~Gi~ 912 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS-LGVV 912 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-cCCC
Confidence 99985 899999999999889999999999999999889999999999999998543 4789999999965 6999
Q ss_pred CCHH
Q 040435 1245 PALE 1248 (1991)
Q Consensus 1245 P~~~ 1248 (1991)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 9875
No 18
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=100.00 E-value=6.3e-47 Score=439.69 Aligned_cols=255 Identities=54% Similarity=0.960 Sum_probs=231.8
Q ss_pred ceEEEEcccchhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 367 YHYAIFSDNVLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 367 ~hi~~~~Dn~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+|||+++||+++++|++.|++.|+++|.+++|||+||+++...|+.||..++..+++|++..++++.+.+......++|+
T Consensus 1 ~hiv~~~Dn~l~~~v~i~S~l~nn~~~~~~~fhvvtd~~s~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~~~~~ 80 (257)
T cd06429 1 IHVVIFSDNRLAAAVVINSSISNNKDPSNLVFHIVTDNQNYGAMRSWFDLNPLKIATVKVLNFDDFKLLGKVKVDSLMQL 80 (257)
T ss_pred CCEEEEecchhHHHHHHHHHHHhCCCCCceEEEEecCccCHHHHHHHHHhcCCCCceEEEEEeCcHHhhcccccchhhhh
Confidence 69999999988999999999999999899999999999999999999999999999999999999999888778888999
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeE
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNG 526 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~a 526 (1991)
++.. ...+.+.++++++|+++|+||++|++||+++||||||+|+||++||++||++|++|+++|
T Consensus 81 ~~~~----------------~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~a 144 (257)
T cd06429 81 ESEA----------------DTSNLKQRKPEYISLLNFARFYLPELFPKLEKVIYLDDDVVVQKDLTELWNTDLGGGVAG 144 (257)
T ss_pred hccc----------------cccccccCCccccCHHHHHHHHHHHHhhhhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEE
Confidence 7544 123455667889999999999999999999999999999999999999999999999999
Q ss_pred eeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhc--cccccCCCCchhh
Q 040435 527 AVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDR--TLWKLGTLPPGLI 604 (1991)
Q Consensus 527 aV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~--~~~~~~dqd~~n~ 604 (1991)
||+| ||||||||+||++||++++++++..|++.+.+. ..++++|||++|+
T Consensus 145 av~d----------------------------yfNsGV~linl~~wr~~~i~~~~~~~~~~~~~~~~~~~~~~dqd~ln~ 196 (257)
T cd06429 145 AVET----------------------------SWNPGVNVVNLTEWRRQNVTETYEKWMELNQEEEVTLWKLITLPPGLI 196 (257)
T ss_pred EEhh----------------------------hcccceEEEeHHHHHhccHHHHHHHHHHHhhhcccchhhcCCccHHHH
Confidence 9987 799999999999999999999999999877653 4478899999999
Q ss_pred hhccccccccccccccccCCCccccccccCCceEeecccCCCccccccccccccccchhhh
Q 040435 605 TFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVI 665 (1991)
Q Consensus 605 ~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~ 665 (1991)
+|.++++.||++||+++++++.......+.+++||||+|+.|||+..+..+++++|++|+.
T Consensus 197 ~~~~~~~~L~~~wN~~~l~~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~~~~~~w~~yl~ 257 (257)
T cd06429 197 VFYGLTSPLDPSWHVRGLGYNYGIRPQDIKAAAVLHFNGNMKPWLRTAIPSYKELWEKYLS 257 (257)
T ss_pred HccCeeEECChHHcccCCcccccccccccCCcEEEEECCCCCCcCCCCCChHHHHHHHHhC
Confidence 9999999999999999888876544455679999999999999999999999999999963
No 19
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=1.9e-40 Score=444.03 Aligned_cols=267 Identities=19% Similarity=0.276 Sum_probs=231.1
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCC-CceEEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPF-YRIEQL 1794 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf-~R~~qv 1794 (1991)
+++.+++++|++||.+|+||||++|+++++++++||+|+.++++||||++|||+|+||+++||+|||++|||| ||++|+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccC-------------C--CCCCc-----
Q 040435 1795 ILATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPL-------------G--EDCAS----- 1854 (1991)
Q Consensus 1795 ii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~-------------~--~~C~i----- 1854 (1991)
||+++.. ++.|||+++.|.|++++++.|++++|...++++||+|+||||. + ..|+|
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9998532 3449999999999999999999999877778899999999998 2 36999
Q ss_pred --------ccHHHHhhcCcC----CCCCcc--------------Ccccccc-----------cccccCCCcccccc----
Q 040435 1855 --------QSVLQYFKMDPE----NYDSYG--------------GIEHAEY-----------CFQHYASSDTCLSA---- 1893 (1991)
Q Consensus 1855 --------~S~l~yf~~~~~----~~~~~~--------------~~~~~~~-----------c~~~~~~~~~c~~~---- 1893 (1991)
+|+.+||+++++ ++++.. |.+++.. |.++|. .+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~d--~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPAD--PDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCCC--CCCCCccccc
Confidence 999999998887 665432 7778877 976432 469999
Q ss_pred -CCCCC--------------------CcccccCCcc---CCCcccccEEEEEEEecc---------------CCCcch-H
Q 040435 1894 -FKAPL--------------------DPSTVLGGFS---GNNYSEASAFIITYPVNN---------------AIDETS-K 1933 (1991)
Q Consensus 1894 -~g~pv--------------------~~~~~lGG~~---~~~~~~A~A~~lty~l~n---------------~~~~~~-~ 1933 (1991)
+|+|+ .|.++|||++ ++++.+|+|+++||+|+| +.+.++ +
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8999999997 678999999999999988 333221 2
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1934 ENRKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1934 ~~~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
..+.+++||++|.++|++.. ....+..+.+++++|++|||++.+++++++|+|||
T Consensus 352 a~~va~~We~~F~~~v~~~~---~~~~~~~~~~fss~SL~del~~~s~~~~~~~~is~ 406 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSL---PKNSSQKILVFSSTTLDDILKKFSDVSAIRIVSGY 406 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhc---ccccCCceEEEecccHHHHHHHhhhhhHHHHHHHH
Confidence 22458999999999999852 12345567667779999999999999999998764
No 20
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.6e-36 Score=367.97 Aligned_cols=253 Identities=17% Similarity=0.218 Sum_probs=188.7
Q ss_pred CCcceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhh
Q 040435 364 PSLYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCS 441 (1991)
Q Consensus 364 ~~~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~ 441 (1991)
+..+||++++|+ +.+++|+|.|++.|+++ ..++|||++|+++.+..+
T Consensus 23 ~~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~-~~~~f~Il~~~is~e~~~------------------------------ 71 (334)
T PRK15171 23 KNSLDIAYGIDKNFLFGCGVSIASVLLNNPD-KSLVFHVFTDYISDADKQ------------------------------ 71 (334)
T ss_pred CCceeEEEECcHhhHHHHHHHHHHHHHhCCC-CCEEEEEEeCCCCHHHHH------------------------------
Confidence 367999999995 66999999999999765 479999999987755544
Q ss_pred HHHHHhhcc---ceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhc
Q 040435 442 VLRQLESAR---LKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWS 517 (1991)
Q Consensus 442 ~l~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~ 517 (1991)
.|+++.... +..+.++...+.. +....++|..+|+||++|++||+ +|||||||+|+||++||++||+
T Consensus 72 ~l~~l~~~~~~~i~~~~id~~~~~~---------~~~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~dl~~L~~ 142 (334)
T PRK15171 72 RFSALAKQYNTRINIYLINCERLKS---------LPSTKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGSIKELID 142 (334)
T ss_pred HHHHHHHhcCCeEEEEEeCHHHHhC---------CcccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCCHHHHHh
Confidence 444543332 2223322211111 12345899999999999999995 9999999999999999999999
Q ss_pred cCCCCCeeEee-ccchhhh-ccccccccCCCccccCCCCC-CCcccccceeEeehHHHHHhhHHHHHHHHHHhchhcccc
Q 040435 518 VDLHGMVNGAV-ETCKESF-HRFDKYLNFSNPLISENFSP-NACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLW 594 (1991)
Q Consensus 518 ~dl~~~~~aaV-~d~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~ 594 (1991)
+|+++..+||| .+....+ .+.... .+.++ ...|||||||||||++||++++++++.+++........+
T Consensus 143 ~dl~~~~~aav~~d~~~~~~~~~~~~---------l~~~~~~~~YFNsGVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~ 213 (334)
T PRK15171 143 LDFAENEIAAVVAEGDAEWWSKRAQS---------LQTPGLASGYFNSGFLLINIPAWAQENISAKAIEMLADPEIVSRI 213 (334)
T ss_pred ccCCCCeEEEEEeccchhHHHHHHHh---------cCCccccccceecceEEEcHHHHHHhhHHHHHHHHHhccccccce
Confidence 99996655655 4532211 111111 11222 245999999999999999999999999998765422346
Q ss_pred ccCCCCchhhhhccccccccccccccccCCCcccc----ccccCCceEeecccCCCccccccccccccccchhhhh
Q 040435 595 KLGTLPPGLITFYNLTYPLDRSWHVLGLGYDPALN----LTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVIL 666 (1991)
Q Consensus 595 ~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~~~~----~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~ 666 (1991)
.++|||++|++|.++++.||++||++ .+...... .....+|+||||+|+.|||+.++.++++++|++|...
T Consensus 214 ~~~DQDiLN~~~~~~~~~L~~~wN~~-~~~~~~~~~~~~~~~~~~p~IIHy~G~~KPW~~~~~~~~~~~f~~~~~~ 288 (334)
T PRK15171 214 THLDQDVLNILLAGKVKFIDAKYNTQ-FSLNYELKDSVINPVNDETVFIHYIGPTKPWHSWADYPVSQYFLKAKEA 288 (334)
T ss_pred eecChhHHHHHHcCCeEECCHhhCCc-cchhHHHHhcccccccCCCEEEEECCCCCCCCCCCCCchHHHHHHHHhc
Confidence 78999999999999999999999987 23222111 1123578999999999999989999999999998765
No 21
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=100.00 E-value=6e-35 Score=344.83 Aligned_cols=260 Identities=19% Similarity=0.245 Sum_probs=187.3
Q ss_pred EEEEccc-chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHHh
Q 040435 369 YAIFSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQLE 447 (1991)
Q Consensus 369 i~~~~Dn-~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l~ 447 (1991)
|+++.+| +..++|+|+|++.|+.. .++|||++|+++.+.++.+.......+..|.+..++++.
T Consensus 5 iv~~~~~y~~~~~~~i~Sil~n~~~--~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~-------------- 68 (280)
T cd06431 5 IVCAGYNASRDVVTLVKSVLFYRRN--PLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELK-------------- 68 (280)
T ss_pred EEEccCCcHHHHHHHHHHHHHcCCC--CEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhh--------------
Confidence 4455567 67899999999999854 499999999999888887776655555555554332211
Q ss_pred hccceEEEecCCCCCCCcCCcCCcccCCCCcch-hhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhcc--CCCCC
Q 040435 448 SARLKEYYFKANHPSSLSAGSDNLKYRNPKYLS-MLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSV--DLHGM 523 (1991)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~--dl~~~ 523 (1991)
....+.++ .++| .++|+||++|++||+ +|||||||+|+||++||++||++ |+.+.
T Consensus 69 ---------------~~~~~~~~------~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~ 127 (280)
T cd06431 69 ---------------SRVSWIPN------KHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQ 127 (280)
T ss_pred ---------------hhhccCcc------cchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCC
Confidence 00000011 2344 358899999999995 99999999999999999999998 67655
Q ss_pred -eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchh-ccccccCCCCc
Q 040435 524 -VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANED-RTLWKLGTLPP 601 (1991)
Q Consensus 524 -~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~-~~~~~~~dqd~ 601 (1991)
++|||++....+...... ....++..+.||||||||+||++||++++++++..+.+.... .....++|||+
T Consensus 128 ~~~a~v~~~~~~~~~~~~~-------~~~~~~~~~~yFNsGVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDi 200 (280)
T cd06431 128 QVLGLVENQSDWYLGNLWK-------NHRPWPALGRGFNTGVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDI 200 (280)
T ss_pred cEEEEeccchhhhhhhhhh-------ccCCCcccccceeeeeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHH
Confidence 777777643221111000 011122234599999999999999999999987655544321 22367899999
Q ss_pred hhhhhccc---cccccccccccccCCCcccc--ccccCCceEeecccCCCccccccc-cccccccchhhhhhhhhccc
Q 040435 602 GLITFYNL---TYPLDRSWHVLGLGYDPALN--LTQIDNGAVVHYNGNNKPWLDLAV-SKYKPYWSKYVILWSLRLRT 673 (1991)
Q Consensus 602 ~n~~f~~~---~~~L~~~wN~~~~~~~~~~~--~~~~~n~~IiHY~g~~KPW~~~a~-~~~~~~W~~yv~~d~p~l~~ 673 (1991)
+|++|.++ ++.||++||++. +...... .....+|+||||+|+.|||..... .+++++|.+|.+.+-+.|+.
T Consensus 201 LN~v~~~~~~~~~~L~~~wN~~~-~~~~~~~~~~~~~~~p~IIHf~g~~KPW~~~~~~~~~~~~~~~~~~~~~~~l~~ 277 (280)
T cd06431 201 FNAVIKQNPFLVYQLPCAWNVQL-SDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRR 277 (280)
T ss_pred HHHHHcCCcceeEECCCcccccc-CccchHhHhhcCcCCCEEEEeCCCCCCCCcCCCChHHHHHHHHHHhcCchhhhh
Confidence 99999999 899999999983 3332221 122468999999999999987776 89999999999888776653
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.1e-29 Score=350.10 Aligned_cols=668 Identities=11% Similarity=-0.001 Sum_probs=554.2
Q ss_pred ccchhhhhhhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCC
Q 040435 659 YWSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGY 737 (1991)
Q Consensus 659 ~W~~yv~~d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~ 737 (1991)
.|.+....++.....+..++..+...|++++|...+.++.+.. |.++.............+ ...+...+..+++.+-
T Consensus 215 ~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 292 (899)
T TIGR02917 215 AYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292 (899)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 3444555555566667778888899999999999999988755 333332211111122223 6778888888877653
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 040435 738 ESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVI 814 (1991)
Q Consensus 738 ~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL 814 (1991)
. +...+..+...|.+.|++++|...|+.+.. .+...+..+...+.+.|++++|+..++.+.... +.+...+..+.
T Consensus 293 ~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 370 (899)
T TIGR02917 293 E-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLG 370 (899)
T ss_pred C-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 2 233444556678899999999999988643 356778888899999999999999999998754 44677888899
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHH
Q 040435 815 QACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFS 890 (1991)
Q Consensus 815 ~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~e 890 (1991)
..+...|++++|.+++..+.+... .+...+..+...|.. |+.++|.+.|+.+.+ .....+..++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHH
Confidence 999999999999999999987653 345566667777777 999999999998743 234567778889999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC
Q 040435 891 GLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP 970 (1991)
Q Consensus 891 Al~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~ 970 (1991)
|++++..+... ...+..++..+...+...|+.+.|.+.+..+++.. +.+...+..+..+|.+.|++++|.+.|+.+.
T Consensus 450 A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 450 ALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999874 45567789999999999999999999999998764 3456678889999999999999999999885
Q ss_pred C---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh
Q 040435 971 Q---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL 1047 (1991)
Q Consensus 971 ~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~ 1047 (1991)
+ .+..++..+...+.+.|+.++|...|.++...+ ..+...+..+...+...|+++++..++..+.+.. +.+..++
T Consensus 527 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 527 TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 4 467889999999999999999999999997643 3345667788889999999999999999987654 4567889
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVAT 1124 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g 1124 (1991)
..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+.. ..+..++..+...+...|
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 456778999999999999999999999998742 335678888899999999
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
+.+.|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++..+.+.|+.++|.+.++++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999998876 45667788899999999999999999998864 66678888999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
.+.. +.+...+..+...|...|+.++|.++|+.+++. -.++...+..+..++.+.|+ .+|+++++++.+..+.+..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 8754 456778888889999999999999999999863 23467889999999999999 8899999998775566788
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+|..+...+...|++++|...++++++++|.++..+..++.+|.+.|++++|..+.+.|.
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999877664
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-28 Score=344.55 Aligned_cols=664 Identities=10% Similarity=0.006 Sum_probs=375.3
Q ss_pred hhhhhhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCch
Q 040435 663 YVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFT 741 (1991)
Q Consensus 663 yv~~d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~ 741 (1991)
.+..++.....+..+...+...|++++|+.++.++.... |++...+..+...+...+ ...+...+...++.. +.+.
T Consensus 151 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 227 (899)
T TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD--PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNP 227 (899)
T ss_pred HHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCH
Confidence 333333334444445555556666666666666655432 333333333333333333 445555555555433 2344
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC--R-DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN-NSILVLVIQAC 817 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~--~-d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd-~~ty~~lL~a~ 817 (1991)
.++..++..+...|++++|...++.+.+ | +...+......+.+.|++++|+..|+++.+.+ |+ ...+..+...+
T Consensus 228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSA--PEYLPALLLAGASE 305 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 5555556666666666666666655432 1 11222222223344555555555555554432 22 11222233334
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHH
Q 040435 818 RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLR 893 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~ 893 (1991)
...|+++.|...+..+++... .+......+...+.+ |++++|...++.+.. .+...|+.+...+.+.|++++|.+
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445555555555555544431 122333334444444 555555555554421 234445555555555555555555
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHH----------------------------------HHHHccCChHHHHHHHHHHHHcC
Q 040435 894 LFRQMVSGFKNEP-DGQSLVSVL----------------------------------KACTNLRDLTMGRMVHGLVIYRG 938 (1991)
Q Consensus 894 lf~~M~~~~gv~P-d~~T~~~lL----------------------------------~a~~~~g~~~~a~~l~~~m~k~g 938 (1991)
+|.++.+. .| +...+..+. ..+.+.|+.+.|..++..+.+.
T Consensus 385 ~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 55554432 12 222333333 3444444555555554444432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 040435 939 LGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNI 1015 (1991)
Q Consensus 939 ~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~l 1015 (1991)
.+.+..++..+...|.+.|++++|...|+++.+ .+...+..+...+...|++++|...|+++.... ..+..++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 223444555555555555666665555555432 234445555555555666666666666554432 1234445555
Q ss_pred HHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChH
Q 040435 1016 LQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPR 1092 (1991)
Q Consensus 1016 L~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~e 1092 (1991)
...+...|+.+++...+..+.+.+ +.+...+..++..|.+.|+.++|..+++.+.+ .+...|..+...|.+.|+++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 555555666666666666555543 23344555566666666666666666666543 34556666666666677777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 040435 1093 EAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS 1172 (1991)
Q Consensus 1093 eAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~ 1172 (1991)
+|+..|+++.+.. ..+...+..+...+...|+.+.|..++..+.+.. +.+...+..+...+.+.|++++|.++++.+.
T Consensus 619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776666532 2234455556666666677777766666666543 3345566666677777777777777777665
Q ss_pred C---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH
Q 040435 1173 R---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEH 1249 (1991)
Q Consensus 1173 ~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~ 1249 (1991)
+ .+...|..+...|...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. ...+...
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 3 34556666777777777777777777777664 344456666777777777777777777777653 2335667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+..+|.+.|++++|.+.++++.+..+++..++..+...+...|+ ..|...+++++++.|+++..+..++.+|...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 77777778888888888888887776556677778888888887777 66888888888888888777777888888888
Q ss_pred CchhHHHHHHHHHHcC
Q 040435 1330 LWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1330 ~~~ea~~vr~~m~~~g 1345 (1991)
++++|....+.+.+.+
T Consensus 852 ~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 852 EADRALPLLRKAVNIA 867 (899)
T ss_pred CHHHHHHHHHHHHhhC
Confidence 8888887766555443
No 24
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.5e-33 Score=327.61 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=188.0
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
.++||++.|+ +.+++|+|.|+|.|++. ..+.||+++|+++.+.++ .|
T Consensus 2 ~~~Iv~a~D~nY~~~~gvsI~SiL~~n~~-~~~~fhil~~~i~~e~~~------------------------------~l 50 (325)
T COG1442 2 TIPIAFAFDKNYLIPAGVSIYSLLEHNRK-IFYKFHILVDGLNEEDKK------------------------------KL 50 (325)
T ss_pred cccEEEEcccccchhHHHHHHHHHHhCcc-ccEEEEEEecCCCHHHHH------------------------------HH
Confidence 4799999996 66999999999999986 469999999997755544 56
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccC-CCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYR-NPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.+.......+...+...+. .+. .+++||+++|+||++|++||+.||+||||+|+||.|||++||.+++++
T Consensus 51 ~~~~~~f~~~i~~~~id~~~~~------~~~~~~~~~s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~ 124 (325)
T COG1442 51 NETAEPFKSFIVLEVIDIEPFL------DYPPFTKRFSKMVLVRYFLADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEE 124 (325)
T ss_pred HHHHHhhccceeeEEEechhhh------cccccccchHHHHHHHHHHHHhccccCeEEEEecCEEEcCcHHHHHhcCCCc
Confidence 5554443333222222222222 222 557999999999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||.|....+.... ..........+.|||||||++|++.||++++++++.++.+..++ ...++|||++
T Consensus 125 ~~~aaV~D~~~~~~~~~-------~~~~~~~~~~~~yFNaG~llinl~~W~~~~i~~k~i~~~~~~~~--~~~~~DQdiL 195 (325)
T COG1442 125 YYLAAVRDVFSHYMKEG-------ALRLEKGDLEGSYFNAGVLLINLKLWREENIFEKLIELLKDKEN--DLLYPDQDIL 195 (325)
T ss_pred ceEEEEeehhhhhhhhh-------hhHhhhcccccccCccceeeehHHHHHHhhhHHHHHHHHhcccc--ccCCccccHH
Confidence 99999999654322110 00011112345699999999999999999999999999877664 4788999999
Q ss_pred hhhhccccccccccccccccCCCcccc----ccccCCceEeecccCCCccccccccccc
Q 040435 603 LITFYNLTYPLDRSWHVLGLGYDPALN----LTQIDNGAVVHYNGNNKPWLDLAVSKYK 657 (1991)
Q Consensus 603 n~~f~~~~~~L~~~wN~~~~~~~~~~~----~~~~~n~~IiHY~g~~KPW~~~a~~~~~ 657 (1991)
|++|.+++..||++||++. +...... ...-.++.|+||+|+.|||+.++....+
T Consensus 196 N~i~~~~~~~L~~~YN~~~-~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~ 253 (325)
T COG1442 196 NMIFEDRVLELPIRYNAIP-YIDSQLKDKYIYPFGDDPVILHYAGPTKPWHSDSSNYPR 253 (325)
T ss_pred HHHHHhhhhccCcccceee-hhhhccchhhhccCCCCceEEEecCCCCCCcCccccccH
Confidence 9999999999999999983 3333222 2234577899999999999988755543
No 25
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=99.98 E-value=6.1e-32 Score=318.39 Aligned_cols=236 Identities=20% Similarity=0.274 Sum_probs=172.1
Q ss_pred ceEEEEcc--c-chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSD--N-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~D--n-~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
|||++.++ | +.+++|++.|+++|++. .++|||++++++....+ .|
T Consensus 1 ~~i~~~a~d~~y~~~~~v~i~Sl~~~~~~--~~~~~il~~~is~~~~~------------------------------~L 48 (246)
T cd00505 1 IAIVIVATGDEYLRGAIVLMKSVLRHRTK--PLRFHVLTNPLSDTFKA------------------------------AL 48 (246)
T ss_pred CeEEEEecCcchhHHHHHHHHHHHHhCCC--CeEEEEEEccccHHHHH------------------------------HH
Confidence 57876665 3 66999999999999876 59999999887755444 44
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCC-CCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRN-PKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+.+.........|...+..... .... .++++..+|+||++|+++|+++||||||+|+||++||++||++++++
T Consensus 49 ~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~y~RL~i~~llp~~~kvlYLD~D~iv~~di~~L~~~~l~~ 122 (246)
T cd00505 49 DNLRKLYNFNYELIPVDILDSV------DSEHLKRPIKIVTLTKLHLPNLVPDYDKILYVDADILVLTDIDELWDTPLGG 122 (246)
T ss_pred HHHHhccCceEEEEeccccCcc------hhhhhcCccccceeHHHHHHHHhhccCeEEEEcCCeeeccCHHHHhhccCCC
Confidence 4443222222222222211111 1111 25778899999999999999999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||+|+...... .+.. ...++....+||||||||+|+++||++++.++...+...... ...++|||++
T Consensus 123 ~~~aav~d~~~~~~~--~~~~-----~~~~~~~~~~yfNsGVmlinl~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~L 193 (246)
T cd00505 123 QELAAAPDPGDRREG--KYYR-----QKRSHLAGPDYFNSGVFVVNLSKERRNQLLKVALEKWLQSLS--SLSGGDQDLL 193 (246)
T ss_pred CeEEEccCchhhhcc--chhh-----cccCCCCCCCceeeeeEEEechHHHHHHHHHHHHHHHHhhcc--cCccCCcHHH
Confidence 999999997542110 0000 112344556799999999999999987777776665544332 3678999999
Q ss_pred hhhhccc---cccccccccccccCCCcccc--ccccCCceEeecccCCCccc
Q 040435 603 LITFYNL---TYPLDRSWHVLGLGYDPALN--LTQIDNGAVVHYNGNNKPWL 649 (1991)
Q Consensus 603 n~~f~~~---~~~L~~~wN~~~~~~~~~~~--~~~~~n~~IiHY~g~~KPW~ 649 (1991)
|.+|.++ ++.||++||++..++..... ....++++||||+|+.|||.
T Consensus 194 N~~~~~~~~~i~~L~~~wN~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~ 245 (246)
T cd00505 194 NTFFKQVPFIVKSLPCIWNVRLTGCYRSLNCFKAFVKNAKVIHFNGPTKPWN 245 (246)
T ss_pred HHHHhcCCCeEEECCCeeeEEecCccccccchhhhcCCCEEEEeCCCCCCCC
Confidence 9999998 99999999998654433211 23467899999999999995
No 26
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=99.97 E-value=1.4e-31 Score=316.47 Aligned_cols=237 Identities=20% Similarity=0.229 Sum_probs=179.9
Q ss_pred ceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 367 YHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
+||++++|. ..+++|++.|+++|++. ..++|||++++++....+ .|+
T Consensus 1 ~~I~~~~d~~y~~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~------------------------------~L~ 49 (248)
T cd04194 1 MNIVFAIDDNYAPYLAVTIKSILANNSK-RDYDFYILNDDISEENKK------------------------------KLK 49 (248)
T ss_pred CCEEEEecHhhHHHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHH------------------------------HHH
Confidence 699999996 66999999999999986 469999999887655544 444
Q ss_pred HHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCe
Q 040435 445 QLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMV 524 (1991)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~ 524 (1991)
++.......+.+...+..... .... ..++++..+|+||++|+++|+++||||||+|+||++||++||++|++++.
T Consensus 50 ~~~~~~~~~i~~~~i~~~~~~----~~~~-~~~~~~~~~y~rl~l~~ll~~~~rvlylD~D~lv~~di~~L~~~~~~~~~ 124 (248)
T cd04194 50 ELLKKYNSSIEFIKIDNDDFK----FFPA-TTDHISYATYYRLLIPDLLPDYDKVLYLDADIIVLGDLSELFDIDLGDNL 124 (248)
T ss_pred HHHHhcCCeEEEEEcCHHHHh----cCCc-ccccccHHHHHHHHHHHHhcccCEEEEEeCCEEecCCHHHHhcCCcCCCE
Confidence 443221122222211111010 0000 34578889999999999999999999999999999999999999999999
Q ss_pred eEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhh
Q 040435 525 NGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLI 604 (1991)
Q Consensus 525 ~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~ 604 (1991)
+|||+|+......... .........+|||||||++|+++||+.++++++.+|+..+.. .+.++|||++|.
T Consensus 125 ~aa~~d~~~~~~~~~~--------~~~~~~~~~~yfNsGv~l~nl~~~r~~~~~~~~~~~~~~~~~--~~~~~DQd~LN~ 194 (248)
T cd04194 125 LAAVRDPFIEQEKKRK--------RRLGGYDDGSYFNSGVLLINLKKWREENITEKLLELIKEYGG--RLIYPDQDILNA 194 (248)
T ss_pred EEEEecccHHHHHHHH--------hhcCCCcccceeeecchheeHHHHHHhhhHHHHHHHHHhCCC--ceeeCChHHHHH
Confidence 9999997654322111 112344567799999999999999999999999999988754 367899999999
Q ss_pred hhccccccccccccccccCCCccc--------cccccCCceEeecccCCCccc
Q 040435 605 TFYNLTYPLDRSWHVLGLGYDPAL--------NLTQIDNGAVVHYNGNNKPWL 649 (1991)
Q Consensus 605 ~f~~~~~~L~~~wN~~~~~~~~~~--------~~~~~~n~~IiHY~g~~KPW~ 649 (1991)
+|.++++.||.+||++...+.... .....++++||||+|..|||.
T Consensus 195 ~~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~g~~KPW~ 247 (248)
T cd04194 195 VLKDKILYLPPRYNFQTGFYYLLKKKSKEEQELEEARKNPVIIHYTGSDKPWN 247 (248)
T ss_pred HHhCCeEEcCcccccchhHhHHhhccchhHHHHHHHhcCCEEEEeCCCCCCCC
Confidence 999999999999999854333221 123467899999999999995
No 27
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=99.97 E-value=8.4e-31 Score=305.74 Aligned_cols=235 Identities=14% Similarity=0.188 Sum_probs=164.2
Q ss_pred ceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHH
Q 040435 367 YHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLR 444 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~ 444 (1991)
+|+|+++-+ +.-+-|+|+|++.|+. .+++|||++|+.. ++++.+.++
T Consensus 1 ~~~~vv~~g~~~~~~~~~lkSil~~n~--~~l~Fhi~~d~~~-----------------------------~~~~~~~l~ 49 (304)
T cd06430 1 MHLAVVACGERLEETLTMLKSAIVFSQ--KPLRFHIFAEDQL-----------------------------KQSFKEKLD 49 (304)
T ss_pred CEEEEEEcCCcHHHHHHHHHHHHHhCC--CCEEEEEEECCcc-----------------------------CHHHHHHHH
Confidence 578876653 5578999999999985 4699999998732 344555778
Q ss_pred HHhhccceEEEecCCCCCCCcCCcCCccc-CCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhcc--CCC
Q 040435 445 QLESARLKEYYFKANHPSSLSAGSDNLKY-RNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSV--DLH 521 (1991)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~--dl~ 521 (1991)
+|.......+.+....+. . |..++ .+++.+++++|+||++|++||++|||||||+|+||.+||++||++ +++
T Consensus 50 ~~~~~~~~~i~~~i~~I~-~----P~~~~~~ws~l~~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~~dI~eL~~~~~df~ 124 (304)
T cd06430 50 DWPELIDRKFNYTLHPIT-F----PSGNAAEWKKLFKPCAAQRLFLPSLLPDVDSLLYVDTDILFLRPVEEIWSFLKKFN 124 (304)
T ss_pred HHHHhccceeeeEEEEEe-c----CccchhhhhhcccHHHHHHHHHHHHhhhhceEEEeccceeecCCHHHHHHHHhhcC
Confidence 886654444433322221 1 11111 123456679999999999999999999999999999999999999 999
Q ss_pred CC-eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHH-----------hhHHHHHHHHHHhch
Q 040435 522 GM-VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRK-----------RNITGIYHYWQDANE 589 (1991)
Q Consensus 522 ~~-~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~-----------~~~~~~~~~~~~~~~ 589 (1991)
++ ++|+|++.. .....+......+++ ....|||||||||||++||+ .+|++++..+++++.
T Consensus 125 ~~~~aA~v~e~~-~~~~~~~~~~~~~~~------~~~~gFNSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (304)
T cd06430 125 STQLAAMAPEHE-EPNIGWYNRFARHPY------YGKTGVNSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYK 197 (304)
T ss_pred CCeEEEEEeccc-ccchhhhhhhcccCc------ccccccccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcc
Confidence 87 455555421 111111111111221 12247999999999999999 788999988887766
Q ss_pred hccccccCCCCchhhhhccc---cccccccccccccCC--CccccccccCCceEeecccCCC
Q 040435 590 DRTLWKLGTLPPGLITFYNL---TYPLDRSWHVLGLGY--DPALNLTQIDNGAVVHYNGNNK 646 (1991)
Q Consensus 590 ~~~~~~~~dqd~~n~~f~~~---~~~L~~~wN~~~~~~--~~~~~~~~~~n~~IiHY~g~~K 646 (1991)
.. ..++|||++|++|.++ ++.||++||++.... .......+...++|||++++.|
T Consensus 198 ~~--l~~~DQDiLN~v~~~~p~~~~~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~ 257 (304)
T cd06430 198 LK--ITWGDQDLINIIFHHNPEMLYVFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY 257 (304)
T ss_pred cC--CCCCCHHHHHHHHcCCCCeEEEcCccccCCccceeecccccccccccceEEEcCCCCC
Confidence 33 6789999999999998 899999999764111 1122223446789999998765
No 28
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=99.95 E-value=9.7e-29 Score=292.79 Aligned_cols=245 Identities=22% Similarity=0.355 Sum_probs=165.3
Q ss_pred eEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHH
Q 040435 368 HYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQ 445 (1991)
Q Consensus 368 hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~ 445 (1991)
||++++|. +.++.|+++|+++|++.+..++|||++++.+.+..+.+-........
T Consensus 1 ~i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~----------------------- 57 (250)
T PF01501_consen 1 HIVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIE----------------------- 57 (250)
T ss_dssp -EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCT-----------------------
T ss_pred CEEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccc-----------------------
Confidence 89999995 66999999999999998778999999999887766643332221110
Q ss_pred HhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCee
Q 040435 446 LESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVN 525 (1991)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~ 525 (1991)
.....+..... .... ........+++..+|+||+++++||++|||||||+|+||.+||++||+++++++.+
T Consensus 58 -----~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~rl~i~~ll~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~ 128 (250)
T PF01501_consen 58 -----IEPIEFPDISM--LEEF--QFNSPSKRHFSPATFARLFIPDLLPDYDRILYLDADTLVLGDLDELFDLDLQGKYL 128 (250)
T ss_dssp -----TECEEETSGGH--HH----TTS-HCCTCGGGGGGGGGGHHHHSTTSSEEEEE-TTEEESS-SHHHHC---TTSSE
T ss_pred -----eeeeccchHHh--hhhh--hhcccccccccHHHHHHhhhHHHHhhcCeEEEEcCCeeeecChhhhhcccchhhhc
Confidence 01111110000 0000 01112345788899999999999999999999999999999999999999999999
Q ss_pred EeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhh
Q 040435 526 GAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLIT 605 (1991)
Q Consensus 526 aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~ 605 (1991)
||+.+... ........+..........+|||||||++|+++||++++.+++..|++.... ...++||+++|++
T Consensus 129 ~a~~~~~~-----~~~~~~~~~~~~~~~~~~~~~fNsGv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~DQ~~ln~~ 201 (250)
T PF01501_consen 129 AAVEDESF-----DNFPNKRFPFSERKQPGNKPYFNSGVMLFNPSKWRKENILQKLIEWLEQNGM--KLGFPDQDILNIV 201 (250)
T ss_dssp EEEE---------HHHHTSTTSSEEECESTTTTSEEEEEEEEEHHHHHHHHHHHHHHHHHHHTTT--T-SSCHHHHHHHH
T ss_pred cccccchh-----hhhhhcccchhhcccCcccccccCcEEEEeechhhhhhhhhhhhhhhhhccc--ccCcCchHHHhhh
Confidence 99988111 1111111111122234457899999999999999999999999999766554 4678999999999
Q ss_pred hccccccccccccccccCC--CccccccccCCceEeecccCCCccccc
Q 040435 606 FYNLTYPLDRSWHVLGLGY--DPALNLTQIDNGAVVHYNGNNKPWLDL 651 (1991)
Q Consensus 606 f~~~~~~L~~~wN~~~~~~--~~~~~~~~~~n~~IiHY~g~~KPW~~~ 651 (1991)
|.+.++.||++||++..++ .........++++||||+|..|||..+
T Consensus 202 ~~~~~~~L~~~~N~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~ 249 (250)
T PF01501_consen 202 FYGNIKPLPCRYNCQPSWYNQSDDYFNPILEDAKIIHYSGPPKPWKST 249 (250)
T ss_dssp HTTGEEEEEGGGSEEHHHHHHTHHHHHHHGCC-SEEE--SSS-TTSTT
T ss_pred ccceeEEECchhccccccccccchhhHhhcCCeEEEEeCCCCcCCCCC
Confidence 9999999999999985444 111112345788999999999999754
No 29
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=99.95 E-value=7.8e-28 Score=280.56 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=159.3
Q ss_pred ceEEEEcc-c--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSD-N--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~D-n--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
+||+.... + +.+++|++.|++.|+. .+++|||++|+++.+.. +.|
T Consensus 1 ini~~~~~~~~y~~~~~v~l~Sll~nn~--~~~~fyil~~~is~e~~------------------------------~~l 48 (248)
T cd06432 1 INIFSVASGHLYERFLRIMMLSVMKNTK--SPVKFWFIKNFLSPQFK------------------------------EFL 48 (248)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHHHcCC--CCEEEEEEeCCCCHHHH------------------------------HHH
Confidence 46665444 4 5689999999999985 46999999988764433 355
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.......+.|...+...... .+... ....++|.||+++++||+ ++||||||+|+||.+||++||++|++|
T Consensus 49 ~~~~~~~~~~i~~i~i~~~~~~~-----~~~~~-~~~~~~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~ 122 (248)
T cd06432 49 PEMAKEYGFEYELVTYKWPRWLH-----KQTEK-QRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKG 122 (248)
T ss_pred HHHHHHhCCceEEEEecChhhhh-----ccccc-chhHHHHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCC
Confidence 55544422222222222111110 00001 113577999999999996 999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhc-hhccccccCCCCc
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN-EDRTLWKLGTLPP 601 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~-~~~~~~~~~dqd~ 601 (1991)
+++|||+++..... ......+...+....+ +...||||||||+||++||++++++++....+.. .....+.++|||+
T Consensus 123 ~~~Aav~d~~~~~~-~~~~~~~~~~~~~~~l-~~~~YfNSGVmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDi 200 (248)
T cd06432 123 APYGYTPFCDSRKE-MDGFRFWKQGYWKSHL-RGRPYHISALYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDL 200 (248)
T ss_pred CeEEEeeccccchh-cccchhhhhhhhhhhc-CCCCccceeeEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchh
Confidence 99999998754311 1111111111111122 2345999999999999999999999776665432 2223367899999
Q ss_pred hhhhhccc-cccccccccccccCCCccccccccCCceEeecccC
Q 040435 602 GLITFYNL-TYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGN 644 (1991)
Q Consensus 602 ~n~~f~~~-~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~ 644 (1991)
+|.++.+. ++.||++||++ .++.. .+..+.|++|||+.+
T Consensus 201 LN~v~~~~~i~~Lp~~w~~~-~~~~~---~~~~~~~~~~~~~~~ 240 (248)
T cd06432 201 PNNMQHQVPIFSLPQEWLWC-ETWCS---DESKKKAKTIDLCNN 240 (248)
T ss_pred hHHHhccCCeEECChHHHHH-HHHhc---ccccCccceeecccC
Confidence 99999886 99999999987 33322 233678899999874
No 30
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=3e-18 Score=243.62 Aligned_cols=605 Identities=12% Similarity=0.047 Sum_probs=404.8
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC--CCh-HHH----------------HHHHHHH
Q 040435 722 YIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC--RDS-VSW----------------NIMIQGH 782 (1991)
Q Consensus 722 ~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~--~d~-~s~----------------n~LI~a~ 782 (1991)
...+++...+++... +.|+.+...++..+.+.|+.++|.+.+++..+ |+. ..+ -.+...+
T Consensus 44 ~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 44 EDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred hHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 334444444444332 23455556666666677777777776666532 221 111 1222345
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHH
Q 040435 783 LDHGTLGEGLWWFYKARVAGFEPNNS-ILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECA 860 (1991)
Q Consensus 783 ~~~g~~~~Al~lf~~M~~~gi~Pd~~-ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A 860 (1991)
.+.|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+++... .+...+..|-..+.. |+.++|
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eA 200 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEG 200 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHH
Confidence 66677777777777766532 23321 111111112234667777777777766542 234445555555555 677777
Q ss_pred HHHHHhcCCCC------HHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 040435 861 RKLFDEMCERD------VISW-----------------SVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKA 917 (1991)
Q Consensus 861 ~~vf~~m~~~d------~~sy-----------------n~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a 917 (1991)
...|+++.... ...| ...+..+-......+|...+.++... ...|+... ...-.+
T Consensus 201 l~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G~~ 278 (1157)
T PRK11447 201 FAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQGLA 278 (1157)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHHHH
Confidence 77777663211 1111 11111111122234455555554432 12232221 122344
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC--CC---HhHHHHH------------
Q 040435 918 CTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KN---KVSWNSA------------ 980 (1991)
Q Consensus 918 ~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d---v~s~n~L------------ 980 (1991)
+...|++++|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+ ...|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 566788888888888888754 23677788888888888999998888887653 22 1223222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Q 040435 981 LSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL 1059 (1991)
Q Consensus 981 I~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~ 1059 (1991)
...+.+.|++++|+..|++.... .| +...+..+-..+...|++++|.+.+..+++... .+...+..+...|. .++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcC
Confidence 33566789999999999988764 34 344566677778888999999999998887652 34455666777774 457
Q ss_pred HHHHHHHHHhcCCCc------------hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccCh
Q 040435 1060 VELAWKLFNDVKKPD------------VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATEL 1126 (1991)
Q Consensus 1060 l~~A~~lf~~m~~~d------------~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~l 1126 (1991)
.++|..+++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...+...|+.
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~ 511 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQR 511 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 899998888765311 223555667788899999999999998874 464 44566777788999999
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC----CH---------hHHHHHHHHHHHcCCHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK----NI---------VSWSAMVAAYGMNGLAH 1193 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~----d~---------~s~n~LI~ay~~~G~~~ 1193 (1991)
++|...++.+++.. +.+...+.++...+.+.|+.++|...++.+... +. ..+..+...+...|+.+
T Consensus 512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 99999999988754 234444445555677899999999999988642 11 11234567788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|+++++. .+++...+..+...+...|+.++|++.|+..++ ..| +...+..++.+|.+.|++++|++.++.
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999872 244556677788889999999999999999976 566 478899999999999999999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch------HHHHHHHHHHhCCCchhHHHH-HHHHHHcC
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA------GYLLASSMYAAGGLWVESSGT-RLLAKERG 1345 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~------~yvlL~~lya~~G~~~ea~~v-r~~m~~~g 1345 (1991)
..+..+.+..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|... ++.|...|
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 88754556778888999999999999999999999998776543 455679999999999999976 55677666
Q ss_pred Cc
Q 040435 1346 VK 1347 (1991)
Q Consensus 1346 i~ 1347 (1991)
+.
T Consensus 743 ~~ 744 (1157)
T PRK11447 743 IT 744 (1157)
T ss_pred CC
Confidence 64
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=2.6e-18 Score=244.18 Aligned_cols=586 Identities=9% Similarity=-0.023 Sum_probs=429.7
Q ss_pred HHHHHHHhcCCchHHHHHHhhcC--C-CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH------------
Q 040435 746 ALMDFYMKWRFPDSAVAVFDDCI--C-RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSIL------------ 810 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd~m~--~-~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty------------ 810 (1991)
..+..+...++.+.|++.++++. . .|...+..++..+.+.|+.++|...+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 44566778899999999998864 2 367788899999999999999999999998754 443322
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHh-h-CCHHHHHHHHHhcCC--C-CHHHHHHHHH
Q 040435 811 -----VLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYV-D-ADMECARKLFDEMCE--R-DVISWSVMIG 880 (1991)
Q Consensus 811 -----~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~ya-k-g~~e~A~~vf~~m~~--~-d~~syn~LI~ 880 (1991)
....+.+...|++++|.+.+..+.+.... +......+..... . |+.++|.+.|+++.. | +...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22334577889999999999999876433 2222111222222 3 899999999999854 3 5667888889
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCC---------------CCHH---HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 040435 881 GYVQSAEAFSGLRLFRQMVSGFKNE---------------PDGQ---SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD 942 (1991)
Q Consensus 881 a~~~~G~~~eAl~lf~~M~~~~gv~---------------Pd~~---T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd 942 (1991)
.+...|+.++|+..|+++....... ++.. .+...+..+-.......+...+..+.+....|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999999986531000 0000 111111111112223344455544443333333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHH-----
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLV----- 1013 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~----- 1013 (1991)
.. ...+...+...|++++|...|++..+ | +...+..|...|.+.|++++|+..|++..+..... ....+.
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 22 22345667789999999999998754 3 77889999999999999999999999987643221 111111
Q ss_pred -------HHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHH
Q 040435 1014 -------NILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIA 1083 (1991)
Q Consensus 1014 -------~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~ 1083 (1991)
..-..+...|++++|...+..+++.. +.+...+..|..+|...|++++|.+.|++..+ | +...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11234567899999999999999875 34566777889999999999999999999875 3 3456666777
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCC--------CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKP--------NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~P--------d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y 1155 (1991)
.|. .++.++|+.+++.+....... ....+..+...+...|+.++|.+.++.+++... .+..++..+...|
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~ 505 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDL 505 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 664 467899999887764321000 011233455667788999999999999988753 3566777899999
Q ss_pred HhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHh
Q 040435 1156 AKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV---------TTLSVLSACSH 1223 (1991)
Q Consensus 1156 ~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~---------T~~~LL~ac~~ 1223 (1991)
.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++.+......++.. .+..+...+..
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999998754 3 55566666666788999999999998865433222222 12345667889
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
.|+.++|.++++. ..++...+..+.+.|.+.|++++|++.+++..+..+.+..++..|...+...|+.++|+..
T Consensus 586 ~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~ 659 (1157)
T PRK11447 586 SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ 659 (1157)
T ss_pred CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999998872 2335667788999999999999999999999876566789999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
++++++..|+++..+..++.+|...|++++|..+.+.+...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999887765443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=2.1e-16 Score=215.01 Aligned_cols=624 Identities=10% Similarity=0.030 Sum_probs=418.2
Q ss_pred ccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHH
Q 040435 682 SKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSA 760 (1991)
Q Consensus 682 ~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A 760 (1991)
...|++++|+..|++..+.. |.++.++..+.+++...+ ...|.......++.. +.|...+..| ..+ ++.++|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhH
Confidence 35699999999999988755 777778877888887777 778888888888764 3455555554 222 899999
Q ss_pred HHHHhhcCC--C-ChHHHHHHHHH--------HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCChHHHHH
Q 040435 761 VAVFDDCIC--R-DSVSWNIMIQG--------HLDHGTLGEGLWWFYKARVAGFEPNNSILVLV-IQACRCLGAYYEGLQ 828 (1991)
Q Consensus 761 ~~lfd~m~~--~-d~~s~n~LI~a--------~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~l-L~a~~~~g~~~~a~~ 828 (1991)
..+++++.. | +...+..+... |.+. ++|++.++ .+.....|+...+... .+.+...++++.+..
T Consensus 128 ~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 128 VTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999853 3 23333333333 6666 45555554 4444444556655555 899999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhh--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC
Q 040435 829 VHGYIIRSGLWAVHSVQNSVLSMYVD--ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEP 906 (1991)
Q Consensus 829 l~~~~~k~G~~~d~~v~naLi~~yak--g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~P 906 (1991)
++..+.+.+... ......|-..|.. ++ +.|..++....+.|...+.++...|.+.|+.++|.++++++.....-.|
T Consensus 204 lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 999999998554 3334455556666 45 8888888766667899999999999999999999999999875433346
Q ss_pred CHHHHHHHHHHHHccCChHH-HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHH
Q 040435 907 DGQSLVSVLKACTNLRDLTM-GRMVHGLVIYRGLGCD-LFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGL 984 (1991)
Q Consensus 907 d~~T~~~lL~a~~~~g~~~~-a~~l~~~m~k~g~~pd-~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~ 984 (1991)
...++.-++. +.+.... ++.-+. + .+.++ ....-.++..+.+.+.++.|.++.+. ...+.. .-.=..+.
T Consensus 282 ~~~~~~~~l~---r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~r~~~~ 352 (987)
T PRK09782 282 QEKSWLYLLS---KYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLAT-LPANEM-LEERYAVS 352 (987)
T ss_pred ccHHHHHHHH---hccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC-CCcchH-HHHHHhhc
Confidence 6655555543 3333321 111110 0 11111 12233457888888998888877442 222221 11111122
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHHHHHh-c-CCCchhhhhhHHHHHHhcCCH-
Q 040435 985 VVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCVILRR-A-FESNELVLNSLIDGYSKCHLV- 1060 (1991)
Q Consensus 985 ~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~-g-~~~d~~v~naLI~~y~k~G~l- 1060 (1991)
...+...++...++.|-+.. | +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+.+
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 430 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLA 430 (987)
T ss_pred cccCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCccc
Confidence 23466667777777775431 1 1111111111223457778888887776652 1 122444555677777777662
Q ss_pred --HHHHHH-------------------------HHhcCC---C--chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCC
Q 040435 1061 --ELAWKL-------------------------FNDVKK---P--DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKP 1108 (1991)
Q Consensus 1061 --~~A~~l-------------------------f~~m~~---~--d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~P 1108 (1991)
.+|..+ +..... + +...|..+...+.. ++.++|+..|.+.... .|
T Consensus 431 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P 507 (987)
T PRK09782 431 TPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP 507 (987)
T ss_pred chHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC
Confidence 222222 111111 2 45567777766666 7888888877776654 46
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHH---HHHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSA---MVAA 1185 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~---LI~a 1185 (1991)
+......+..++...|+++.|...+..+... .++...+..+...+.+.|+.++|...|+...+.+...++. +...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 6655444455556888899988888876554 2333445566777888899999999988776533222222 2233
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~e 1264 (1991)
+...|++++|+..+++..+ +.|+...+..+..++.+.|+.++|.+.+++.++ +.|+ ...+..+..+|...|+++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345899999999998886 457777888888888899999999999988876 6774 677788888888999999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|++.+++..+..+.+..+|..+..++...|+.+.|+..++++++++|++.......+.+.....++..+.+-..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999888775556788889999999999999999999999999999888888888888888888877776444
No 33
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.85 E-value=3.1e-21 Score=253.64 Aligned_cols=250 Identities=19% Similarity=0.335 Sum_probs=211.5
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCC--ceEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFY--RIEQ 1793 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~--R~~q 1793 (1991)
++++.+..+|+++|.++++|||.+|++|++++++|+.|++.+..+.|+.++|+|.++++|.|++-|.+.|+-|+ |..+
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999998765 4444
Q ss_pred E--EEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-ccccccCCccccccccccccCCCCCCcccHHHHhhcCcCCCCC
Q 040435 1794 L--ILATLPDPKNGKQPSIITEDNFQLLFEMQKKVD-GVRANDSASLVSITDICLKPLGEDCASQSVLQYFKMDPENYDS 1870 (1991)
Q Consensus 1794 v--ii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~-~l~~~~~~~~~tl~DiC~kp~~~~C~i~S~l~yf~~~~~~~~~ 1870 (1991)
+ ++.. .++||+|++++++++.++++.|+ |+++..++..++|+|+|.+.-+..|..+-++..++++...
T Consensus 84 ~~~~~~~------~~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~--- 154 (868)
T KOG1934|consen 84 IFRFIYL------KDGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTIS--- 154 (868)
T ss_pred eEEEEEe------ccCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccCC---
Confidence 3 3333 25679999999999999999999 7888888888999999999767789888888887643321
Q ss_pred ccCcccccccccccCCCccccccCCCCCCcccccCCcc----CCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHH
Q 040435 1871 YGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTVLGGFS----GNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFI 1946 (1991)
Q Consensus 1871 ~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~lGG~~----~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~ 1946 (1991)
..++... +|.+..+|.|++.+..|||++ ++++.+|+|++++|.++-++++. .+.+.+||.+|.
T Consensus 155 ---~~~~~lT-------YP~~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~~~---~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 155 ---RPQFNLT-------YPITEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTDET---EQVAKEWERSLE 221 (868)
T ss_pred ---CCceEEe-------cCccccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCcch---HHHHHHHHHHHH
Confidence 1122211 467778899999999999996 46789999999999999765543 478999999999
Q ss_pred HHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEEEEeC
Q 040435 1947 QLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTIVVSL 1991 (1991)
Q Consensus 1947 ~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~~iS~ 1991 (1991)
+++.++. ++..++++++++++++||+.|++.+-+|.+++++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f 262 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGF 262 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHH
Confidence 9998862 4444999999999999999999999999887653
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=2.5e-15 Score=204.64 Aligned_cols=557 Identities=11% Similarity=-0.014 Sum_probs=387.3
Q ss_pred hcCCchHHHHHHhhcCC--C-ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCIC--R-DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~--~-d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
..|++++|...|+...+ | +...+..|...|.+.|+.++|+..+++..+. .|+...|..++..+ ++..+|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44999999999988643 3 5678899999999999999999999998875 46666666655333 888899999
Q ss_pred HHHHHHhCCCCchHHHHHHHHH--------Hhh-CCHHHHHHHHHhcCCC--CHH-HHHHHHHHHHHcCChHHHHHHHHH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSM--------YVD-ADMECARKLFDEMCER--DVI-SWSVMIGGYVQSAEAFSGLRLFRQ 897 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~--------yak-g~~e~A~~vf~~m~~~--d~~-syn~LI~a~~~~G~~~eAl~lf~~ 897 (1991)
++.+++.... +..++..+... |.+ .....|++ .+...+ +.. ..-.+...|.+.|++++|++++.+
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999987643 23333333333 666 55566665 333223 344 344448999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC-----
Q 040435 898 MVSGFKNEPDGQSLVSVLKACTN-LRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ----- 971 (1991)
Q Consensus 898 M~~~~gv~Pd~~T~~~lL~a~~~-~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~----- 971 (1991)
+.+. + ..+..-...+-.++.. .++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++++++.
T Consensus 208 L~k~-~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQ-N-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhc-C-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9985 2 2233334455556665 355 666666432 4446888999999999999999999999999863
Q ss_pred CCHhHHHH------------------------------HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh-
Q 040435 972 KNKVSWNS------------------------------ALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICK- 1020 (1991)
Q Consensus 972 ~dv~s~n~------------------------------LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~- 1020 (1991)
++..+|-- ++.-+.+.++++.|.++. ...|..... .++...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~r~~~~ 352 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML--EERYAVS 352 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH--HHHHhhc
Confidence 22222211 133444555555444331 133333321 222222
Q ss_pred -ccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC------CchhhhhHHHHhhhhcCC---
Q 040435 1021 -CFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK------PDVVLWSTMIAGFTLCGR--- 1090 (1991)
Q Consensus 1021 -~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~------~d~~syn~LI~~y~~~g~--- 1090 (1991)
..+...++.+....+.+.. +-+....--+.-...+.|+.++|..+|+..-. .+...-+-++..|.+.+.
T Consensus 353 ~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 353 VATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred cccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 2345555556666655542 11333333333345678999999999998764 223345567788887776
Q ss_pred hHHHHHHH------------HHH----------HH-CCCCCC---HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1091 PREAIAVF------------QEM----------NQ-AQEKPN---AITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1091 ~eeAl~lf------------~~M----------~~-~Gv~Pd---~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
..+|+.+- .++ .. .+..|+ ...+..+-..+. .+..++|...+....... |+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~-~~~~~eAi~a~~~Al~~~--Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYR-DTLPGVALYAWLQAEQRQ--PD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHH-hCCcHHHHHHHHHHHHhC--Cc
Confidence 44444441 111 11 122233 333443433333 478888888777666554 34
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac 1221 (1991)
......+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.+ |+.. .+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHH
Confidence 33333445555689999999999998764 455567777888999999999999999998754 4443 333444455
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
...|++++|...+++.++ +.|+...|..+..++.+.|+.++|...+++.....+.+...+..|..++...|+.++|+
T Consensus 587 ~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 677999999999999876 68888899999999999999999999999998866667889999999999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
..++++++++|+++..+..++.+|...|+.++|....+..
T Consensus 664 ~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 664 EMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765543
No 35
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=99.83 E-value=3.4e-20 Score=217.19 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=108.5
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNA 557 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1991)
.++..+|.||+++++. ++|||||||+|+||.+||++||++ +..++||.+.. + .
T Consensus 73 ~~~~~~~~kl~~~~l~-~~drvlylD~D~~v~~~i~~Lf~~---~~~~~a~~d~~--------------------~---~ 125 (240)
T cd02537 73 PRFKDTYTKLRLWNLT-EYDKVVFLDADTLVLRNIDELFDL---PGEFAAAPDCG--------------------W---P 125 (240)
T ss_pred hHHHHHhHHHHhcccc-ccceEEEEeCCeeEccCHHHHhCC---CCceeeecccC--------------------c---c
Confidence 5567889999999975 589999999999999999999998 56688887631 0 3
Q ss_pred cccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc--cccccccccccccCCCcccc-ccccC
Q 040435 558 CGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL--TYPLDRSWHVLGLGYDPALN-LTQID 634 (1991)
Q Consensus 558 ~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~--~~~L~~~wN~~~~~~~~~~~-~~~~~ 634 (1991)
.|||||||++|+... ..+.+.+++..... +..+||+++|.+|.++ +..||.+||++...+..... .....
T Consensus 126 ~~fNsGv~l~~~~~~----~~~~~~~~~~~~~~---~~~~DQdiLN~~~~~~~~~~~l~~~yN~~~~~~~~~~~~~~~~~ 198 (240)
T cd02537 126 DLFNSGVFVLKPSEE----TFNDLLDALQDTPS---FDGGDQGLLNSYFSDRGIWKRLPFTYNALKPLRYLHPEALWFGD 198 (240)
T ss_pred ccccceEEEEcCCHH----HHHHHHHHHhccCC---CCCCCHHHHHHHHcCCCCEeECCcceeeehhhhccCchhhcccC
Confidence 499999999999653 34444445444332 6789999999999999 99999999998432221111 12346
Q ss_pred CceEeecccCCCccccccc
Q 040435 635 NGAVVHYNGNNKPWLDLAV 653 (1991)
Q Consensus 635 n~~IiHY~g~~KPW~~~a~ 653 (1991)
+++||||+|..|||.....
T Consensus 199 ~~~iiHf~g~~KPW~~~~~ 217 (240)
T cd02537 199 EIKVVHFIGGDKPWSWWRD 217 (240)
T ss_pred CcEEEEEeCCCCCCCCCcC
Confidence 8899999999999965543
No 36
>PLN00176 galactinol synthase
Probab=99.80 E-value=2e-19 Score=214.17 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=109.5
Q ss_pred hhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhc--cccccccCCCccc---cCCCC--
Q 040435 482 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFH--RFDKYLNFSNPLI---SENFS-- 554 (1991)
Q Consensus 482 ~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~--~~~~~~~~~~~~~---~~~~~-- 554 (1991)
.+|.||.++++. ++|||||||+|+||.++|++||+++. + .+|||.||.++.. ++..+. ..+... +..|+
T Consensus 100 i~~tKl~iw~l~-~ydkvlyLDaD~lv~~nid~Lf~~~~-~-~~aAV~dc~~~~~~~~~p~~~-~~~c~~~~~~~~wp~~ 175 (333)
T PLN00176 100 INYSKLRIWEFV-EYSKMIYLDGDIQVFENIDHLFDLPD-G-YFYAVMDCFCEKTWSHTPQYK-IGYCQQCPDKVTWPAE 175 (333)
T ss_pred hhhhhhhhcccc-ccceEEEecCCEEeecChHHHhcCCC-c-ceEEEeccccccccccccccc-ccccccchhhccchhh
Confidence 456788888865 58999999999999999999999953 3 5899999866522 110000 000000 01111
Q ss_pred ---CCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccccccccccccccccCCCc-cccc
Q 040435 555 ---PNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLGLGYDP-ALNL 630 (1991)
Q Consensus 555 ---~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~~~~~~-~~~~ 630 (1991)
+...||||||||+|++.|+.+++.+ ++.... ...++|||++|+.|.++++.||..||++. .... ....
T Consensus 176 ~g~~~~~yFNSGVlvinps~~~~~~ll~----~l~~~~---~~~f~DQD~LN~~F~~~~~~Lp~~YN~~~-~~~~~~~~~ 247 (333)
T PLN00176 176 LGPPPPLYFNAGMFVFEPSLSTYEDLLE----TLKITP---PTPFAEQDFLNMFFRDIYKPIPPVYNLVL-AMLWRHPEN 247 (333)
T ss_pred ccCCCCCeEEeEEEEEEcCHHHHHHHHH----HHHhcC---CCCCCCHHHHHHHHcCcEEECCchhcCch-hhhhhChhh
Confidence 2356999999999999999877664 333332 24689999999999999999999999973 1111 1111
Q ss_pred cccCCceEeeccc-CCCccccc
Q 040435 631 TQIDNGAVVHYNG-NNKPWLDL 651 (1991)
Q Consensus 631 ~~~~n~~IiHY~g-~~KPW~~~ 651 (1991)
...++++||||+| ..|||...
T Consensus 248 ~~~~~vkIIHY~~~~~KPW~~~ 269 (333)
T PLN00176 248 VELDKVKVVHYCAAGSKPWRYT 269 (333)
T ss_pred cccCCcEEEEeeCCCCCCCCCC
Confidence 2245789999996 57999643
No 37
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=6.8e-15 Score=176.46 Aligned_cols=441 Identities=12% Similarity=0.075 Sum_probs=338.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 040435 878 MIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLK-ACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKC 956 (1991)
Q Consensus 878 LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~-a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~ 956 (1991)
|..-..+.|++.+|++.-...-.+ .|+..--..+++ .+.+..+++...+--...++.. ..-..+|..+.+.+-..
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 444455677888887755444332 222222222222 2333334443333222222222 22356788888999999
Q ss_pred CChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HhccCChhhHHHHH
Q 040435 957 KDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQI-CKCFVHPMECKSVH 1032 (1991)
Q Consensus 957 G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a-~~~~g~~~~a~~i~ 1032 (1991)
|++++|+.+++.+.+ ..+..|.-+..++...|+.+.|...|.+..+ +.|+.+...+-+.. ....|.+++|+..+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999988765 3678899999999999999999999988765 56766554433322 23367788888888
Q ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCc---hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC
Q 040435 1033 CVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPD---VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN 1109 (1991)
Q Consensus 1033 ~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d---~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd 1109 (1991)
..+++... --..+|+.|-..+-..|++..|..-|++..+-| ...|-.|-..|...+.+++|+..|.+... .+|+
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn 284 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPN 284 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCc
Confidence 77776542 235678888888999999999999999887633 34677888888899999999999887765 4665
Q ss_pred H-HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHH
Q 040435 1110 A-ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAA 1185 (1991)
Q Consensus 1110 ~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~a 1185 (1991)
. +.+..+-..|-..|.++.|..-++..+.... .=...|+.|..++-..|++.+|...|..... | -..+.+.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4 4566666667788999999998888877542 2256789999999999999999999998875 3 35688899999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~ 1263 (1991)
|...|.+++|..+|....+ +.|.- ..++.|...|-..|++++|+..+++.++ |+|+ ...|+.|...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999887 56654 4688899999999999999999998875 9998 57899999999999999
Q ss_pred HHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1264 DIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
++|.+.+.+...-.+.-+...+.|.+.++..||..+|+..|+.+++++|+.+.+|-.|.........|.|
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999998764344567899999999999999999999999999999999999999988888888888
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=3.4e-14 Score=180.06 Aligned_cols=295 Identities=12% Similarity=0.045 Sum_probs=226.8
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhccCh
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN---AITIINLLEACSVATEL 1126 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd---~~T~~~lL~a~a~~g~l 1126 (1991)
.+...|++++|...|.++.+ | +..+|..+...|.+.|++++|+.+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45566777778888877764 3 344677777777788888888888887776432222 23456666777777888
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--C------HhHHHHHHHHHHHcCCHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK--N------IVSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--d------~~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|+.++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888887777652 345667788888899999999999999888642 1 12456677788899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1199 VAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1199 f~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
|+++.+.. +.+...+..+...+.+.|++++|.++++++.+ ..|+ ...+..++.+|.+.|++++|.+.++++.+.
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE---QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998753 22355677788889999999999999999975 3454 456888999999999999999999998763
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh--CCCchhHHHHHHHHHHcCCcccCcEE
Q 040435 1277 LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA--GGLWVESSGTRLLAKERGVKVVAGNS 1353 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~--~G~~~ea~~vr~~m~~~gi~k~~g~s 1353 (1991)
.|+...+..+...+...|+.++|...++++++..|++.....++...+.. .|+.+++..+.+.|.++++++.|.+.
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 56767778899999999999999999999999999887644444433322 56899999999999999999999943
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.65 E-value=2.5e-14 Score=181.34 Aligned_cols=295 Identities=13% Similarity=0.078 Sum_probs=185.6
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPD-GQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD---LFVGNSLIDMYAKCK 957 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd-~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd---~~v~naLI~~y~k~G 957 (1991)
+...|++++|+..|.++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..++ ..++..|...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44556667777777777653 333 33555566666666666666666666665432211 245677788888888
Q ss_pred ChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 958 DTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 958 ~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++...+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 88888888888765 4667888888888888888888888888865432211100
Q ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH
Q 040435 1035 ILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI 1111 (1991)
Q Consensus 1035 ~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~ 1111 (1991)
....+..+...|.+.|++++|.+.|+++.+ | +...+..+...|.+.|++++|+++|+++...+......
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 011234566667777888888888877654 2 34566777778888888888888888877643211123
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHH-
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGM- 1188 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~- 1188 (1991)
++..+..++...|+.+.|...+..+.+.. |+...+..++..|.+.|++++|..+|+++.+ |+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 44555555666666666666555555542 3333445566666666666666666665543 566666666655553
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHH
Q 040435 1189 --NGLAHEALALVAEMKLGGLQPNAV 1212 (1991)
Q Consensus 1189 --~G~~~eAl~lf~eM~~~Gi~Pd~~ 1212 (1991)
+|+.++|+.++++|.+.+++|+..
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC
Confidence 446666666666666666555554
No 40
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.65 E-value=2.5e-16 Score=215.67 Aligned_cols=213 Identities=21% Similarity=0.360 Sum_probs=170.3
Q ss_pred hhhcccCccccCCCcccccCCCChhhhh----hhhhhhcCCCCCceEEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 040435 1750 LCLGVIRFKVETRPEKLWVGPGSRAAGE----KQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITEDNFQLLFEMQKK 1825 (1991)
Q Consensus 1750 l~~Gl~~~~~etdp~~Lw~p~~S~a~~E----k~~fd~~Fgpf~R~~qvii~~~~~~~~~~~~~vL~~~~l~~~~~l~~~ 1825 (1991)
++.|+.++..++|.. .|+|++++++.| ++||++++.|++|+..|+.+. .++|+|+++.|+++.+|++.
T Consensus 1 ~~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~~~i~a~~-------~~~nlL~~~~l~ei~~l~~~ 72 (798)
T PF02460_consen 1 TSSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRFVIIIAKD-------GGSNLLRPEYLDEILQLDDF 72 (798)
T ss_pred CCCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEEEEEEEec-------CCCCCcCHHHHHHHHHHHHH
Confidence 467888899999988 999999999998 456677777887775544443 23389999999999999999
Q ss_pred Hhc-cccccCCccccccccccccCCCCCCcccHHHHhhc-CcCCCCCccCcccccccccccCCCccccccCCCCCCcccc
Q 040435 1826 VDG-VRANDSASLVSITDICLKPLGEDCASQSVLQYFKM-DPENYDSYGGIEHAEYCFQHYASSDTCLSAFKAPLDPSTV 1903 (1991)
Q Consensus 1826 I~~-l~~~~~~~~~tl~DiC~kp~~~~C~i~S~l~yf~~-~~~~~~~~~~~~~~~~c~~~~~~~~~c~~~~g~pv~~~~~ 1903 (1991)
|++ +++..++++++|+|+|.++-..+|.++++++++.. +..+ ..+ +. .+|++..+|.|++.+..
T Consensus 73 I~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~l-----tyP~~~~~~~~~~l~~~ 138 (798)
T PF02460_consen 73 IMNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNRSN-------DNI--NL-----TYPIMNIFGQPIFLGPN 138 (798)
T ss_pred HHHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhccC-------Cce--ee-----cCCccCCCCcccccCce
Confidence 986 88888888999999999976779999999986321 1111 111 11 24677789999999999
Q ss_pred cCCcc----CCCcccccEEEEEEEeccCCCcchHhhHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhh
Q 040435 1904 LGGFS----GNNYSEASAFIITYPVNNAIDETSKENRKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRE 1979 (1991)
Q Consensus 1904 lGG~~----~~~~~~A~A~~lty~l~n~~~~~~~~~~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~ 1979 (1991)
|||++ ++.+.+|+|++++|.++.+.++ ..+.+.+||++|.+++++.. ...++++++++++|++||++++
T Consensus 139 ~ggv~~~~~~~~i~~a~a~~l~y~l~~~~~~---~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~ 211 (798)
T PF02460_consen 139 FGGVTTDPDNGNIESAKAVVLTYMLNTDDEE---QEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRN 211 (798)
T ss_pred ecCccccCCcchhheeEEEEEEEEcccccch---hhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHH
Confidence 99996 3568999999999999865433 24688999999999998751 3347999999999999999999
Q ss_pred hcccccEEEEeC
Q 040435 1980 STADVVTIVVSL 1991 (1991)
Q Consensus 1980 s~~dv~~~~iS~ 1991 (1991)
+.+++|.+++|+
T Consensus 212 ~~~~~~~~~~~~ 223 (798)
T PF02460_consen 212 SQTLVPLFAIGF 223 (798)
T ss_pred HHhHHHHHHHHH
Confidence 999999887653
No 41
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=2.4e-13 Score=163.39 Aligned_cols=412 Identities=14% Similarity=0.086 Sum_probs=319.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCH
Q 040435 914 VLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKY 990 (1991)
Q Consensus 914 lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~ 990 (1991)
+..-..+.|++.+|++--..+-... +.+....-.+-..+..+.+.+....--....+ .-..+|..+...+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3334456678887776444333322 11111222233445555555544332222222 2457899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh-hhHHHHHHhcCCHHHHHHHHH
Q 040435 991 SEALSLLYSMGKGVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL-NSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 991 ~eAl~lf~~M~~~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~-naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
++|+.+++.|.+ ++|+ ...|..+-.++...|+.+.|.+.+...++.. |+.... +-+-......|++++|...+.
T Consensus 133 ~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 999999999987 4564 4578888889999999999999998888754 444433 334444556899999999888
Q ss_pred hcCC--Cc-hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhccccc
Q 040435 1069 DVKK--PD-VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRCLAEE 1144 (1991)
Q Consensus 1069 ~m~~--~d-~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d 1144 (1991)
+..+ |. .+.|+.|...+-.+|+..+|+..|++..+ +.|+- ..|..|-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7664 43 57899999999999999999999999876 56653 356677777777777777776666555432 223
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA-VTTLSVLSA 1220 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~a 1220 (1991)
..++..|...|-..|.+|-|...|++..+ |+ ...|+.|..++-..|+..+|...|++.+. +.|+. ...+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 55667777888999999999999998875 43 57999999999999999999999999887 45554 478889999
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC-HHHHHHHHHHHHHcCChh
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT-ASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd-~~~~~~Ll~a~~~~g~~e 1298 (1991)
+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++... ++|+ +.+++.+...|...|++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-I~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-IKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh-cCchHHHHHHhcchHHHHhhhHH
Confidence 9999999999999998876 7776 56789999999999999999999999876 5665 569999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.|...+.+++..+|.-+.++..|+.+|..+|...+|..-.+
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 99999999999999999999999999999999999887554
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=6.5e-12 Score=171.71 Aligned_cols=90 Identities=11% Similarity=-0.038 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+..++...|++++|++.++++....+.+...+..+...+...|+.+.|+..++++++++|++...++.++.++...|
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~ 441 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ 441 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 33444455555555555555555544334445555555555555555555555555555555555555555555555555
Q ss_pred CchhHHHHHH
Q 040435 1330 LWVESSGTRL 1339 (1991)
Q Consensus 1330 ~~~ea~~vr~ 1339 (1991)
+|++|+.+.+
T Consensus 442 ~~~~A~~~~~ 451 (765)
T PRK10049 442 EWRQMDVLTD 451 (765)
T ss_pred CHHHHHHHHH
Confidence 5555554433
No 43
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=99.61 E-value=3.6e-15 Score=174.27 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=107.7
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNA 557 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1991)
.|+. +|.||.++++ ++++||||||+|+||.++|++||+++.... +||+.. +|
T Consensus 76 ~~~~-~~tKl~~~~l-~~y~kvlyLDaD~l~~~~ideLf~~~~~~~-~Aap~~---------------------~~---- 127 (278)
T cd06914 76 YWAK-SLTKLRAFNQ-TEYDRIIYFDSDSIIRHPMDELFFLPNYIK-FAAPRA---------------------YW---- 127 (278)
T ss_pred cHHH-HHHHHHhccc-cceeeEEEecCChhhhcChHHHhcCCcccc-eeeecC---------------------cc----
Confidence 5554 4999999998 679999999999999999999999984333 555331 11
Q ss_pred cccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccc-------ccccccc-ccccc--------
Q 040435 558 CGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNL-------TYPLDRS-WHVLG-------- 621 (1991)
Q Consensus 558 ~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~-------~~~L~~~-wN~~~-------- 621 (1991)
||||||||+|++.|+.+++.+++....... ....|||++|.+|.+. +..||.+ ||++.
T Consensus 128 -~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~-----~~~~DQdiLN~~~~~~~~~~~~~~~~Lp~~~y~llt~~~r~~~~ 201 (278)
T cd06914 128 -KFASHLMVIKPSKEAFKELMTEILPAYLNK-----KNEYDMDLINEEFYNSKQLFKPSVLVLPHRQYGLLTGEFREKLH 201 (278)
T ss_pred -eecceeEEEeCCHHHHHHHHHHHHHhcccC-----CCCCChHHHHHHHhCCccccCcceEEcCccccccCChhhcccCH
Confidence 899999999999999999998775543221 2568999999999999 9999987 99874
Q ss_pred ---cC-----CCccccccccCCceEeecccC--CCccccccc
Q 040435 622 ---LG-----YDPALNLTQIDNGAVVHYNGN--NKPWLDLAV 653 (1991)
Q Consensus 622 ---~~-----~~~~~~~~~~~n~~IiHY~g~--~KPW~~~a~ 653 (1991)
+| ++.+...+..+++|+|||... .|||.....
T Consensus 202 ~~~l~~~~~~~~~w~~~~~~~~~k~vHFSd~Pl~KPW~~~~~ 243 (278)
T cd06914 202 KSFLSNAQHLYEKWDPDDVFKESKVIHFSDSPLPKPWNYNNL 243 (278)
T ss_pred HHhhccccccccccCHHHHHhhCeEEEecCCCCCCCcCCcCH
Confidence 11 111111133468899999986 799965543
No 44
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=1.1e-11 Score=166.36 Aligned_cols=414 Identities=11% Similarity=-0.038 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 874 SWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMY 953 (1991)
Q Consensus 874 syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y 953 (1991)
.+......+.+.|++++|+..|.+..+ +.|+...|..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 455666777888888888888888775 46776667667677777777777777777766543 12344566666666
Q ss_pred HhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHhccCChhhH
Q 040435 954 AKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGV--NEVDEITLVNILQICKCFVHPMEC 1028 (1991)
Q Consensus 954 ~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G--i~Pd~~T~~~lL~a~~~~g~~~~a 1028 (1991)
...|++++|..-|..... .+......++..+.. ..+........... ..|........+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~------------ 268 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL------------ 268 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH------------
Confidence 677777766665543221 011111111111111 11111111111100 011111111111
Q ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch---hhhhHHHHh---hhhcCChHHHHHHHHHHH
Q 040435 1029 KSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV---VLWSTMIAG---FTLCGRPREAIAVFQEMN 1102 (1991)
Q Consensus 1029 ~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~---~syn~LI~~---y~~~g~~eeAl~lf~~M~ 1102 (1991)
.......+..-++...+.+. ..+..+... ....+++++|++.|++..
T Consensus 269 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 269 ---------------------------QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred ---------------------------HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 10000000000110000000 000000000 012345566666666655
Q ss_pred HCC-CCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHh
Q 040435 1103 QAQ-EKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIV 1177 (1991)
Q Consensus 1103 ~~G-v~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~ 1177 (1991)
+.+ ..|+ ...+..+-..+...|+++.|...+..+++.. +.....+..+...|...|++++|...|+++.+ .+..
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~ 400 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 543 2232 2233344444455666666666666655542 12233555666667777777777777776643 3456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
.|..+...|...|++++|+..|++.++. .| +...+..+..++...|++++|+..|+..++ ..| +...|..+..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~ 475 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGE 475 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHH
Confidence 7777777777788888888888877764 34 344556666677777888888888887765 345 3567777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHH-------HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATAS-------AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~-------~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
+|...|++++|.+.+++..+..+.+.. .++..+..+...|++++|...++++++++|++...+..++.+|...
T Consensus 476 ~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 476 LLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ 555 (615)
T ss_pred HHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 888888888888887776542111111 1111222233357888888888888888888777778888888888
Q ss_pred CCchhHHHHHHH
Q 040435 1329 GLWVESSGTRLL 1340 (1991)
Q Consensus 1329 G~~~ea~~vr~~ 1340 (1991)
|++++|......
T Consensus 556 g~~~eAi~~~e~ 567 (615)
T TIGR00990 556 GDVDEALKLFER 567 (615)
T ss_pred cCHHHHHHHHHH
Confidence 888887765543
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=7e-12 Score=171.39 Aligned_cols=416 Identities=11% Similarity=-0.012 Sum_probs=315.3
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC
Q 040435 892 LRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ 971 (1991)
Q Consensus 892 l~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 971 (1991)
+..++. .+. -..+..-..-.+......|+.++|.+++....... ..+...+..+..++.+.|++++|..+|+...+
T Consensus 2 ~~~~~~-~~~--~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 2 LSWLRQ-ALK--SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred chhhhh-hhc--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555 332 23344455566777788999999999999887632 44566789999999999999999999999543
Q ss_pred ---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhh
Q 040435 972 ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLN 1048 (1991)
Q Consensus 972 ---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~n 1048 (1991)
.+...+..+...+...|+.++|+..+++.... .|+...+..+-.++...|+.++|...+..+++.... +..++.
T Consensus 78 ~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~ 154 (765)
T PRK10049 78 LEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPT 154 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 35677888999999999999999999999765 444333667777888999999999999999987643 555666
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCC-Cch------hhhhHHHHhh-----hhcCCh---HHHHHHHHHHHHC-CCCCCHH-
Q 040435 1049 SLIDGYSKCHLVELAWKLFNDVKK-PDV------VLWSTMIAGF-----TLCGRP---REAIAVFQEMNQA-QEKPNAI- 1111 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~m~~-~d~------~syn~LI~~y-----~~~g~~---eeAl~lf~~M~~~-Gv~Pd~~- 1111 (1991)
.+..++.+.|..+.|.+.++.... |+. .....++..+ ...+++ ++|++.++.+.+. ...|+..
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 788888899999999999998876 221 1122222222 222334 7899999999864 2344332
Q ss_pred HHH----HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-------HhHHH
Q 040435 1112 TII----NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN-------IVSWS 1180 (1991)
Q Consensus 1112 T~~----~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d-------~~s~n 1180 (1991)
.+. ..+.++...++.+.|...++.+.+.+-.......-.+...|...|++++|+..|+++.+.+ ...+.
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 221 1245667779999999999999888632111222335778999999999999999886422 23566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGL-----------QPNA---VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP- 1245 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi-----------~Pd~---~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P- 1245 (1991)
.|..++...|++++|+++++++....- .|+. ..+..+...+...|+.++|++.++++.. ..|
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~ 391 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPG 391 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 677788999999999999999987531 1232 2345566778899999999999999976 456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
+...+..+..++.+.|++++|++.+++.....+.+...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 578899999999999999999999999987555567888888889999999999999999999999999863
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.57 E-value=6.4e-11 Score=151.04 Aligned_cols=560 Identities=13% Similarity=0.099 Sum_probs=328.2
Q ss_pred hHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc---hhhHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCchHHH
Q 040435 687 WQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS---YIHGRLVHACLVKQ--GYESFTSIGNALMDFYMKWRFPDSAV 761 (1991)
Q Consensus 687 ~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~---~~~a~~i~~~~lk~--g~~~d~~~~n~Li~~y~k~G~~~~A~ 761 (1991)
.+.|...|....... |+ .....+.+||..-+ +..+..++...+.. ...+|+.+.-. ..+.++|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~s--p~--Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PD--NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhC--Cc--chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHH
Confidence 688889998887755 43 34567778886543 66777777775543 34556554422 4456888888888
Q ss_pred HHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc
Q 040435 762 AVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAV 841 (1991)
Q Consensus 762 ~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d 841 (1991)
..|.+..+-|...-++++... +++.-.. | ...+..|.+++...-+.. ..+
T Consensus 220 ~a~~ralqLdp~~v~alv~L~-----------~~~l~~~-----d-------------~~s~~~~~~ll~~ay~~n-~~n 269 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALG-----------EVDLNFN-----D-------------SDSYKKGVQLLQRAYKEN-NEN 269 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHH-----------HHHHHcc-----c-------------hHHHHHHHHHHHHHHhhc-CCC
Confidence 888877665554444444211 1110000 0 012233333333333322 224
Q ss_pred hHHHHHHHHHHhh-CCHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHH--
Q 040435 842 HSVQNSVLSMYVD-ADMECARKLFDEMCERD------VISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLV-- 912 (1991)
Q Consensus 842 ~~v~naLi~~yak-g~~e~A~~vf~~m~~~d------~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~-- 912 (1991)
+.+.+.|-+.|.- |+++.+..+...+.... ..+|--|.++|...|++++|...|.+-.. ..||.+++.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k---~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK---ADNDNFVLPLV 346 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc---cCCCCcccccc
Confidence 4455555555443 66666666655553221 23466678888888888888888887764 345543333
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHhccCCCC---CHhHHHHHHHHHH
Q 040435 913 SVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCK----DTDSAFKVFSEMPQK---NKVSWNSALSGLV 985 (1991)
Q Consensus 913 ~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G----~~e~A~~lf~~m~~~---dv~s~n~LI~a~~ 985 (1991)
.+...+...|+++.+...|+.+.+.. +.+..+...|-..|+..+ ..+.|..+.....++ |...|-.+...+-
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 34455566666666666666666543 223444555555555443 344555555444432 4444544444333
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 986 VNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 986 ~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
+.. ...++.+|... ...+...+..+.+.+.|.+...+...|+++.|..
T Consensus 426 ~~d-~~~sL~~~~~A-------------------------------~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 426 QTD-PWASLDAYGNA-------------------------------LDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred hcC-hHHHHHHHHHH-------------------------------HHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 322 22224333322 1123334445666777777777777777777777
Q ss_pred HHHhcCC-------Cchh-------hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-hccChHHHH
Q 040435 1066 LFNDVKK-------PDVV-------LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS-VATELSSSK 1130 (1991)
Q Consensus 1066 lf~~m~~-------~d~~-------syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a-~~g~le~a~ 1130 (1991)
.|+.... +|.. -|| +...+-..++.+.|.+.|....+. -|.-++--.-+.+.+ ..+.+..|.
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~ 550 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEAS 550 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHH
Confidence 7766542 2221 122 334445566777777777777664 354443222221111 224445555
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHH------------cCCHH
Q 040435 1131 WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGM------------NGLAH 1193 (1991)
Q Consensus 1131 ~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~------------~G~~~ 1193 (1991)
..+..+.... ..++.+++-+.+.|.+...+..|.+-|..+.+ +|..+.-+|.+.|.+ .+..+
T Consensus 551 ~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~ 629 (1018)
T KOG2002|consen 551 LLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQE 629 (1018)
T ss_pred HHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHH
Confidence 5555444432 34455555566677777777777775554432 354444444443332 24567
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
+|+++|.+.+... +-|...-+.+.-.+++.|.+.+|..+|.+..+. ..-...+|-.+...|.-+|++..|+++|+..
T Consensus 630 KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 630 KALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887643 336666677777778888888888888888764 2233456777888888888888888888876
Q ss_pred ccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1274 PDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1274 ~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
... -+.+..+..-|..++...|.+.+|.+.+..++.+.|.++..-+.++-+.
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH
Confidence 553 2346778888888888888888888888888888888887666655443
No 47
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.56 E-value=8.9e-12 Score=166.96 Aligned_cols=329 Identities=12% Similarity=0.023 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh
Q 040435 977 WNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK 1056 (1991)
Q Consensus 977 ~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k 1056 (1991)
...++..+.+.|++++|+.+++........+.. .+..+..+....|+++.|...+..+++.. +.+...+..+..+|.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 344567777888888888888887665433322 33344455556888888888888887765 3345667778888899
Q ss_pred cCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
.|+.++|...+++..+ | +...|..+...+...|+.++|...++.+.... |+.......+..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988765 3 45678888889999999999999998887643 33322222233467889999999888
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHH----HHHHHHHHHHCC
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHE----ALALVAEMKLGG 1206 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~e----Al~lf~eM~~~G 1206 (1991)
..+.+....++......+...|.+.|+.++|...|+.+.+ .+...+..+...|.+.|++++ |+..|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 8877764334444555567788899999999999998764 356788889999999999886 89999999874
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH-HH
Q 040435 1207 LQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA-SA 1283 (1991)
Q Consensus 1207 i~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~-~~ 1283 (1991)
.| +...+..+...+...|++++|...+++.++ ..|+ ...+..+..+|.+.|++++|.+.++++... .|+. ..
T Consensus 280 -~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~-~P~~~~~ 354 (656)
T PRK15174 280 -NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLARE-KGVTSKW 354 (656)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CccchHH
Confidence 45 455788888899999999999999999876 5665 567778899999999999999999998764 4443 34
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1284 WGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1284 ~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
+..+..++...|+.++|...++++++..|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 44456778899999999999999999999875
No 48
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.56 E-value=4.3e-11 Score=160.68 Aligned_cols=421 Identities=12% Similarity=0.012 Sum_probs=262.0
Q ss_pred HHHHhh-CCHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCCh
Q 040435 849 LSMYVD-ADMECARKLFDEM--CERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPD-GQSLVSVLKACTNLRDL 924 (1991)
Q Consensus 849 i~~yak-g~~e~A~~vf~~m--~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd-~~T~~~lL~a~~~~g~~ 924 (1991)
-..|.+ |+++.|...|++. ..|+...|..+..+|.+.|++++|++.+....+ +.|+ ...+..+-.++...|++
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE---LDPDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHcCCH
Confidence 344445 9999999999987 347888899999999999999999999999987 3554 45788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 040435 925 TMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGV 1004 (1991)
Q Consensus 925 ~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G 1004 (1991)
++|..-+..+...+-..+......+...+ +......+...++.-+. +..++..+ ..|........+..-+.+-..
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~a~~~~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 285 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLL-KKFAESKAKEILETKPE-NLPSVTFV-GNYLQSFRPKPRPAGLEDSNE-- 285 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHH-HHHHHHHHHHHHhcCCC-CCCCHHHH-HHHHHHccCCcchhhhhcccc--
Confidence 99998887665543222222222222222 21223444444444322 22333332 222222111111111111000
Q ss_pred CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHH-HHhcCCHHHHHHHHHhcCC------Cchhh
Q 040435 1005 NEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDG-YSKCHLVELAWKLFNDVKK------PDVVL 1077 (1991)
Q Consensus 1005 i~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~-y~k~G~l~~A~~lf~~m~~------~d~~s 1077 (1991)
..+... ...+... +... ....+++++|.+.|+...+ .....
T Consensus 286 ~~~~~~--~~~~~l~------------------------------~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a 333 (615)
T TIGR00990 286 LDEETG--NGQLQLG------------------------------LKSPESKADESYEEAARAFEKALDLGKLGEKEAIA 333 (615)
T ss_pred cccccc--cchHHHH------------------------------HHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHH
Confidence 001000 0000000 0000 0123445555555555432 12334
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHH
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYA 1156 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~ 1156 (1991)
|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|+++.|...+..+++.. +.+..++..+...|.
T Consensus 334 ~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 334 LNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 555555566666666666666665543 343 3345555555566666666666666665543 334566777778888
Q ss_pred hcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1157 KCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
..|++++|...|++..+ | +...|..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|.+.
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHH
Confidence 88999999998887764 3 46677788888889999999999999887642 23466777888888899999999999
Q ss_pred HHHhHHhcCCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 040435 1234 FNSMVQDHGVEPAL-E-------HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATS 1305 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~~-~-------~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e 1305 (1991)
|+..++ +.|+. . .++.....+...|++++|.+++++.....+.+..++..|...+...|++++|...++
T Consensus 490 ~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 988765 44431 1 112222234446899999999998765444456678889999999999999999999
Q ss_pred HHHhcCCCCch
Q 040435 1306 RILELEAQNSA 1316 (1991)
Q Consensus 1306 ~llel~P~~~~ 1316 (1991)
+++++.+....
T Consensus 567 ~A~~l~~~~~e 577 (615)
T TIGR00990 567 RAAELARTEGE 577 (615)
T ss_pred HHHHHhccHHH
Confidence 99998776443
No 49
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.55 E-value=8.6e-11 Score=136.98 Aligned_cols=328 Identities=13% Similarity=0.109 Sum_probs=218.0
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHH-HHHHHHHHHhCCCCchHHHHHH
Q 040435 772 SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG--AYYEG-LQVHGYIIRSGLWAVHSVQNSV 848 (1991)
Q Consensus 772 ~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g--~~~~a-~~l~~~~~k~G~~~d~~v~naL 848 (1991)
+++-|.|+.. ...|...++.-+|++|+..|+..+...-..+++..+-.+ ++-.+ .+-|-.|.+.|-... .+
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~-~s---- 189 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDST-SS---- 189 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccc-cc----
Confidence 4566666654 456888999999999999998888776666665544332 22211 122333333332221 11
Q ss_pred HHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 040435 849 LSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMG 927 (1991)
Q Consensus 849 i~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a 927 (1991)
.| |++.+ ++-+...+...+|..||.|+++-...++|.++|++.... ..+.+..+|+.+|.+-+ +..+
T Consensus 190 ----WK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 ----WKSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ----cccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHH----hhcc
Confidence 12 44433 444444456679999999999999999999999999876 67899999999998864 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH----hccCC----CCCHhHHHHHHHHHHhcCCHHH-HHHHHH
Q 040435 928 RMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKV----FSEMP----QKNKVSWNSALSGLVVNEKYSE-ALSLLY 998 (1991)
Q Consensus 928 ~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~l----f~~m~----~~dv~s~n~LI~a~~~~g~~~e-Al~lf~ 998 (1991)
+.+..+|+...+.||..++|+++...++.|+++.|++. +.+|+ +|...+|..+|..+.+.++..+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 88999999999999999999999999999998877644 33343 3566666666666666655533 333333
Q ss_pred HHhc----CCCCC----CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 999 SMGK----GVNEV----DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 999 ~M~~----~Gi~P----d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+.+. ..++| |...|.+.+..|.+..+.+.|.++++.+....- |...|.. +
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~--- 395 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q--- 395 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H---
Confidence 3322 12222 344556666666666666666666654322110 0000100 0
Q ss_pred CCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc
Q 040435 1071 KKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL 1141 (1991)
Q Consensus 1071 ~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~ 1141 (1991)
....-|..+....++....+..+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|.
T Consensus 396 --~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 396 --HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 112335556666777778888889999998888888888998999988888888888888777776663
No 50
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.53 E-value=1.1e-11 Score=165.94 Aligned_cols=322 Identities=10% Similarity=-0.025 Sum_probs=262.5
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--C-chhhhhHHHHhhhhc
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--P-DVVLWSTMIAGFTLC 1088 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~-d~~syn~LI~~y~~~ 1088 (1991)
...++..+-+.|+.+.|..++..++..........+ .|+......|+.+.|...|+++.+ | +...|..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 344566777889999999999998887755544444 455666779999999999999875 3 456788888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHH
Q 040435 1089 GRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKA 1167 (1991)
Q Consensus 1089 g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~l 1167 (1991)
|+.++|+..|++..+. .|+ ...+..+...+...|+.+.|...+..+.+....+.. .+..+ ..+.+.|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999874 565 456677888899999999999999887766543333 33333 347889999999999
Q ss_pred HHhccCC----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhHH
Q 040435 1168 FDQISRK----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEE----GLSFFNSMVQ 1239 (1991)
Q Consensus 1168 f~~m~~~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~----A~~i~~~M~~ 1239 (1991)
++.+.+. +...+..+...+...|+.++|+..|+++.+.. +.+...+..+..++...|++++ |...|+..++
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9987652 33445556778899999999999999999754 3356677778888999999986 8999998876
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.|+ ...+..+..+|.+.|++++|...+++.....+.+..++..|..++...|++++|...++++++.+|+++..+
T Consensus 279 ---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred ---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 6675 678999999999999999999999998875556778899999999999999999999999999999988877
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
..++.+|...|++++|........
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778999999999999998766543
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=1.1e-10 Score=156.75 Aligned_cols=441 Identities=9% Similarity=-0.022 Sum_probs=206.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCC--CCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 040435 845 QNSVLSMYVDADMECARKLFDEMCE--RDV-ISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNL 921 (1991)
Q Consensus 845 ~naLi~~yakg~~e~A~~vf~~m~~--~d~-~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~ 921 (1991)
+...|-.+..|+++.|+..|++..+ |+. .....++..+...|+.++|+..+++... ........+..+...+...
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHc
Confidence 4444444445777777777776643 221 1122666666666777777777766642 1111222233334455566
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHHHHHHHHHh--cCCHHHHHHHH
Q 040435 922 RDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWNSALSGLVV--NEKYSEALSLL 997 (1991)
Q Consensus 922 g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n~LI~a~~~--~g~~~eAl~lf 997 (1991)
|+++.|.++++.+++.... +..++..|+..|...++.++|+..++++... +...+ +..+|.. .++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~--l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY--MTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH--HHHHHHHHhcchHHHHHHHH
Confidence 6777777777776665432 2445556666666666666666666666543 32233 2233333 34444466666
Q ss_pred HHHhcCCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchh
Q 040435 998 YSMGKGVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVV 1076 (1991)
Q Consensus 998 ~~M~~~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~ 1076 (1991)
++|.+. .|+ ...+.....+..+.|-...|.++... .|+.++-.-+... +.+.|.+..+.-..+
T Consensus 193 ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~--- 256 (822)
T PRK14574 193 SEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP--- 256 (822)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc---
Confidence 666543 232 22333444444444444444333221 1111100000000 000000000000000
Q ss_pred hhhHHHHhhhhcCC---hHHHHHHHHHHHHC-CCCCCHHH-----HHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1077 LWSTMIAGFTLCGR---PREAIAVFQEMNQA-QEKPNAIT-----IINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1077 syn~LI~~y~~~g~---~eeAl~lf~~M~~~-Gv~Pd~~T-----~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.-....+ .+.|+.-++.+... +-.|.... ..-.|-++...++...+...++.+...|.+....+
T Consensus 257 -------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 257 -------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred -------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 0001111 23455555554431 12232111 11233344555555555555555555555444455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------------
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISRK---------NIVSWSAMVAAYGMNGLAHEALALVAEMKLGG------------ 1206 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~~---------d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G------------ 1206 (1991)
--++.++|...+..++|..+|..+... +......|.-+|...+++++|..+++++.+.-
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 556666666666666666666655321 12223455556666666666666666665421
Q ss_pred -CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHH
Q 040435 1207 -LQPNAVT-TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASA 1283 (1991)
Q Consensus 1207 -i~Pd~~T-~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~ 1283 (1991)
..||-.. +..+...+.-.|++.+|++.++.+.. ..| |......+.+++...|+..+|++.++.+....+.+..+
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 0112222 12223344555555555555555543 334 45555555555555555555555554444322333444
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1284 WGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1284 ~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
...+..+....|++.+|+.+.+.+++..|+++.
T Consensus 487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 445555555555555555555555555555553
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1e-09 Score=140.24 Aligned_cols=546 Identities=13% Similarity=0.057 Sum_probs=356.2
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhh-CCHHHHHH
Q 040435 788 LGEGLWWFYKARVAGFEPNNSILVLVIQACR--CLGAYYEGLQVHGYIIRSG--LWAVHSVQNSVLSMYVD-ADMECARK 862 (1991)
Q Consensus 788 ~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~--~~g~~~~a~~l~~~~~k~G--~~~d~~v~naLi~~yak-g~~e~A~~ 862 (1991)
.+.|...|...++.. ++| ....+.+||. ..+++..|..+|..++... ..+|+.+.-. ..+.+ |+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 477888887776642 233 2344556665 3457888888888866543 3455543322 23345 77888888
Q ss_pred HHHhcCCCCHHHHHHHHHHH-H--H---cCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 040435 863 LFDEMCERDVISWSVMIGGY-V--Q---SAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIY 936 (1991)
Q Consensus 863 vf~~m~~~d~~syn~LI~a~-~--~---~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k 936 (1991)
.|.+..+-|...-++++.-. . . ...+..++.++...-.. -.-|.+..+.|..-+.-.|++..+..+...++.
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 88877554444444433221 1 1 12345566666665543 223455667777777788888888888888876
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCChHHHHHHhccCCC--CC--HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 937 RGLGCD--LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KN--KVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 937 ~g~~pd--~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d--v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
....-. ...|--+.++|-..|+++.|...|....+ +| +..+--+...|.+.|+.+.+...|++... ..||..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~ 376 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNY 376 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchH
Confidence 642211 22355677888888888888888876654 22 34455577788888888888888888865 345543
Q ss_pred -HHHHHHHHHhccC----ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC------HHHHHHHHHhc-CCCchhhh
Q 040435 1011 -TLVNILQICKCFV----HPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL------VELAWKLFNDV-KKPDVVLW 1078 (1991)
Q Consensus 1011 -T~~~lL~a~~~~g----~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~------l~~A~~lf~~m-~~~d~~sy 1078 (1991)
|...+-..|+..+ ..+.|..+.....+.- ..|...|-.+..+|-...- +..|..++..- ........
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 4444444444443 3345555555544443 3455566666666654433 22333222221 23566678
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHC---CCCCCH-----HHHHHHHHH-HhhccChHHHHHHHHHHHHhccccchhHHH
Q 040435 1079 STMIAGFTLCGRPREAIAVFQEMNQA---QEKPNA-----ITIINLLEA-CSVATELSSSKWAHGIAIRRCLAEEVAVGT 1149 (1991)
Q Consensus 1079 n~LI~~y~~~g~~eeAl~lf~~M~~~---Gv~Pd~-----~T~~~lL~a-~a~~g~le~a~~i~~~~~k~g~~~d~~v~n 1149 (1991)
|.+..-+...|.+++|...|.+.... -..+|. .|..--+.. .-..++.+.|.+.+..+++.. -
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--------p 527 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--------P 527 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--------c
Confidence 88888888999999999999887654 233444 222222333 335568888888888888764 2
Q ss_pred HHHHHHHhc-------CCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHH
Q 040435 1150 AVVDMYAKC-------GAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAVTTLSVL 1218 (1991)
Q Consensus 1150 aLI~~y~k~-------G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~T~~~LL 1218 (1991)
..|++|.+. +.+.+|...+..... .+...|+-+...|.....+.-|.+-|+...+. ...+|..+..+|.
T Consensus 528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 345666655 456678888877654 56778888888888888888888866666543 2347888877777
Q ss_pred HHHH------------hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1219 SACS------------HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1219 ~ac~------------~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..|. ..+..++|+++|...++ ..| +...-+-+.-.|+..|++.+|.++|.+..+-......+|-
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence 7553 23456778888887765 555 5677778888899999999999999998764344557999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhc--CCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1286 ALLSACRSYGNTELGAGATSRILEL--EAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel--~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
.|...|...|++..|+++|+..++. .-+++.....|+.++...|+|.++...... +....|.-+.+..+
T Consensus 685 Nlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~----a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 685 NLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK----ARHLAPSNTSVKFN 755 (1018)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHhCCccchHHhH
Confidence 9999999999999999999999874 334566777889999999999997765442 22334555554444
No 53
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.50 E-value=1.6e-10 Score=155.23 Aligned_cols=435 Identities=10% Similarity=0.002 Sum_probs=300.4
Q ss_pred HHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040435 881 GYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDT 959 (1991)
Q Consensus 881 a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~ 959 (1991)
...+.|++..|++.|++..+ ..|+.. ....++..+...|+.++|+..++..+. .-........++...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESK---AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHh---hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 34688999999999999986 356642 222777777888999999888888871 1122233444446678888999
Q ss_pred HHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 040435 960 DSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL 1036 (1991)
Q Consensus 960 e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~ 1036 (1991)
++|..+|+++.+ | +...+..++..+.+.++.++|++.++++... .|+...+..++..+...++..++.+.++.++
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999988865 2 4566677788888889999999998888653 4555555333333333455545777777777
Q ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCH---HHH
Q 040435 1037 RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNA---ITI 1113 (1991)
Q Consensus 1037 ~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~---~T~ 1113 (1991)
+.. +.+...+..++.+..+.|-...|.++..+-+. ..+=..... =+.+.|.+ +.+.+..++. .-|
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~----~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAE----QVRMAVLPTRSETERF 264 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHH----HHhhcccccccchhhH
Confidence 765 34566667777777888887777777665442 211110000 00111222 2211211111 011
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHh-cccc-ch-hHHHHHH---HHHHhcCCHHHHHHHHHhccCC----CHhHHHHHH
Q 040435 1114 INLLEACSVATELSSSKWAHGIAIRR-CLAE-EV-AVGTAVV---DMYAKCGAIEASRKAFDQISRK----NIVSWSAMV 1183 (1991)
Q Consensus 1114 ~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~-d~-~v~naLI---~~y~k~G~~e~A~~lf~~m~~~----d~~s~n~LI 1183 (1991)
. -++.+..-...+... +-.| .. ....+.+ -++.+.|+..++.+.|+.|... ...+--++.
T Consensus 265 ~----------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 265 D----------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred H----------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 1 123333333333331 1112 11 1223333 3566789999999999999853 234556788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC----------CCCC--
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGG-----LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG----------VEPA-- 1246 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~G-----i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g----------i~P~-- 1246 (1991)
.+|...+++++|+.+|+++.... ..++......|..|+...+++++|..+++.+.+..- -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122344467889999999999999999999976211 1232
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1247 -LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1247 -~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
...+..++..+...|++.+|++.++++...-|-|..++..+...++..|+...|+..++.+..++|++..+.+.++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3456677888999999999999999998777779999999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~~ 1343 (1991)
...|+|.+|..+...+.+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999887655443
No 54
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=3.6e-10 Score=131.91 Aligned_cols=322 Identities=16% Similarity=0.132 Sum_probs=212.1
Q ss_pred ccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHH-Hh--ccchhhH-HHHHHHHHHhCCCCchHHHHHHHH
Q 040435 674 WNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKA-CS--NLSYIHG-RLVHACLVKQGYESFTSIGNALMD 749 (1991)
Q Consensus 674 cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~a-c~--~~~~~~a-~~i~~~~lk~g~~~d~~~~n~Li~ 749 (1991)
=|.++.. ...|..+++.-+|++|+..|+.. ++.+-..|++. |- +.....+ .+-+-.|-+.|- ....+|
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~v-S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW----- 190 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDV-SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW----- 190 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc-----
Confidence 3444444 46778899999999999999743 45554555552 21 2221111 111222222221 112223
Q ss_pred HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 750 FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
|.|.+.+ -+|+..| +...+|..||+|+++--..+.|.++|.+.++...+.+..+|+.++.+-+- ..++.+
T Consensus 191 ---K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~L 260 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKL 260 (625)
T ss_pred ---ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHH
Confidence 5565544 4455444 56778999999999999999999999999998889999999999988653 445899
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHH----HHhc----CCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKL----FDEM----CERDVISWSVMIGGYVQSAEAFS-GLRLFRQMV 899 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~v----f~~m----~~~d~~syn~LI~a~~~~G~~~e-Al~lf~~M~ 899 (1991)
..+|+.....||..++|++++..++ |.++.|++. +.+| .+|...+|..+|..+.+.++..+ |..+..+.+
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 9999999999999999999999999 877666554 4455 56888899999998888887744 444444443
Q ss_pred hC-C-----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCChHHHHHHhcc
Q 040435 900 SG-F-----KNEP-DGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG----LGCDLFVGNSLIDMYAKCKDTDSAFKVFSE 968 (1991)
Q Consensus 900 ~~-~-----gv~P-d~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g----~~pd~~v~naLI~~y~k~G~~e~A~~lf~~ 968 (1991)
.. . .+.| |..-|.+.+..|.+..+.+.|.++++.+.... +.++.
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~------------------------- 395 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ------------------------- 395 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-------------------------
Confidence 21 0 1223 34567888888888888888988887765321 11110
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCC
Q 040435 969 MPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFE 1041 (1991)
Q Consensus 969 m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~ 1041 (1991)
....-|.-+....++....+.-+..|+.|.-.-+-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 ---~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 ---HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0111233344455555556666666666665556666666666666666666666666666666665543
No 55
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=1e-13 Score=178.64 Aligned_cols=255 Identities=16% Similarity=0.228 Sum_probs=189.5
Q ss_pred CCCCcceEE-EEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhh
Q 040435 362 EDPSLYHYA-IFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSS 438 (1991)
Q Consensus 362 ~~~~~~hi~-~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~ 438 (1991)
.|...|+|+ +++.. -+-.-+++.|+++|++.| +.|.++- .+|++.
T Consensus 1177 ~~~~vINIFSvASGHLYERflrIMm~SvlknTktp--VKFWfLk------------------------------NyLSPt 1224 (1470)
T KOG1879|consen 1177 KDKEVINIFSVASGHLYERFLRIMMLSVLKNTKTP--VKFWFLK------------------------------NYLSPT 1224 (1470)
T ss_pred CccceEEEEeeccccHHHHHHHHHHHHHHhCCCCc--eeEEeeh------------------------------hhcChH
Confidence 334478887 44444 346789999999999988 4454443 378899
Q ss_pred hhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhc
Q 040435 439 YCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWS 517 (1991)
Q Consensus 439 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~ 517 (1991)
+.++++.|.+.....|.+....++.+- +--+-+.=.+++|--||+.-+||- ++||||+|+|-||+.||.||.+
T Consensus 1225 FKe~iP~mA~eYnFeyElv~YkWPrWL------hqQ~EKQRiiWgyKILFLDVLFPL~v~KvIfVDADQIVR~DL~EL~d 1298 (1470)
T KOG1879|consen 1225 FKESIPHMAKEYNFEYELVQYKWPRWL------HQQTEKQRIIWGYKILFLDVLFPLNVDKVIFVDADQIVRADLKELMD 1298 (1470)
T ss_pred HHHHHHHHHHHhCceEEEEEecCchhh------hhhhhhhhhhhhhhhhhhhhccccccceEEEEcchHhhhhhhHHHHh
Confidence 999999999888888877766554432 111112224599999999999996 9999999999999999999999
Q ss_pred cCCCCCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHH-HHHhchhcccccc
Q 040435 518 VDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHY-WQDANEDRTLWKL 596 (1991)
Q Consensus 518 ~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~-~~~~~~~~~~~~~ 596 (1991)
+||+|..+|-++-|... ..+.+|.+|+..+++..+-+ ..|..|..-|+||++.|+..-.+++.- ++..-.+-....-
T Consensus 1299 fdl~GaPygYtPfCdsR-~EMDGyRFWK~GYW~~hL~g-rkYHISALYVVDLkrFReiaAGDrLR~qYQ~LS~DPNSLsN 1376 (1470)
T KOG1879|consen 1299 FDLGGAPYGYTPFCDSR-REMDGYRFWKQGYWKKHLRG-RKYHISALYVVDLKRFREIAAGDRLRGQYQALSQDPNSLSN 1376 (1470)
T ss_pred cccCCCccccCcccccc-ccccchhHHhhhHHHHHhcc-CccccceeeeeeHHHHHhcccchHHHHHHHhhcCCcchhhh
Confidence 99999999999988655 67889999999998887655 789999999999999999666655532 2222222222333
Q ss_pred CCCCch-hhhhccccccccccccccccCCCccccccccCCceEeecccCCCccccc-----cccccccccchh
Q 040435 597 GTLPPG-LITFYNLTYPLDRSWHVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDL-----AVSKYKPYWSKY 663 (1991)
Q Consensus 597 ~dqd~~-n~~f~~~~~~L~~~wN~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~-----a~~~~~~~W~~y 663 (1991)
-|||.- |+...-.++.||..| +++..+.+....+++|+|.-|.+ ||.+. |+ +.-..|..|
T Consensus 1377 LDQDLPNnm~hqVpIkSLPqeW----LWCETWC~d~skkkAktIDLCnN--P~TKEpKL~~A~-Riv~EW~dy 1442 (1470)
T KOG1879|consen 1377 LDQDLPNNMQHQVPIKSLPQEW----LWCETWCDDESKKKAKTIDLCNN--PLTKEPKLDAAR-RIVSEWTDY 1442 (1470)
T ss_pred ccccccccceeecccccCCcch----hhhhhhcCchhhhhchhhhhhcC--ccccchhhHHHh-hhcCCCccc
Confidence 456544 444555899999999 67778887788889999999886 88554 33 334457766
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=3.5e-10 Score=142.27 Aligned_cols=144 Identities=11% Similarity=0.091 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCH------hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISRKNI------VSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN-AVTTLSV 1217 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~------~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd-~~T~~~L 1217 (1991)
..|..||+..+...++++|..+.++...+|. .-+..+...+.+++...++..++++|.+.-. +|+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5678899999999999999999999887654 4577888888999999999999999987432 222 4456667
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
+..-...|..+.-.+.++-+. .+|+.-+ .-++....+.++...|.+..+...++.+|.+.....+.+...++
T Consensus 572 lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke 643 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKE 643 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhh
Confidence 777778888888888887654 4455432 44555667788888888888877666677777666666665543
No 57
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.41 E-value=1.5e-07 Score=115.56 Aligned_cols=507 Identities=12% Similarity=0.030 Sum_probs=316.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcC---
Q 040435 793 WWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMC--- 868 (1991)
Q Consensus 793 ~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~--- 868 (1991)
+++++.++. -|+.+ .|=++.....+.+.|+-++...++.- ..+..+| -+|++ .-++.|..++++..
T Consensus 367 RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~i 436 (913)
T KOG0495|consen 367 RVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREII 436 (913)
T ss_pred HHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhhC
Confidence 445554443 24433 23455555666666777777776642 2233333 34445 45677777776653
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--
Q 040435 869 ERDVISWSVMIGGYVQSAEAFSGLRLFRQM----VSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCD-- 942 (1991)
Q Consensus 869 ~~d~~syn~LI~a~~~~G~~~eAl~lf~~M----~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd-- 942 (1991)
..+...|-+--.-=-++|+.+....+..+- ..+ |+..+..-|..=..+|-..|..-....|...++..|++-.
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 346677766655556677777777666543 233 6777777777777777777777777777777776665432
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQIC 1019 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~ 1019 (1991)
..+|..-...+.+.+.++-|+.+|....+ .+...|...+..=-..|..++...+|.+.... .|
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~p------------ 581 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CP------------ 581 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CC------------
Confidence 34566666667777777777777665544 24455655554444456666666666655432 11
Q ss_pred hccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHH
Q 040435 1020 KCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIA 1096 (1991)
Q Consensus 1020 ~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~ 1096 (1991)
-....|-....-+-..|++..|+.++.+.-+ .+...|-+-+..-..+..+++|..
T Consensus 582 ----------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 582 ----------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred ----------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHH
Confidence 1112222222233334555555555544432 133445555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C
Q 040435 1097 VFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K 1174 (1991)
Q Consensus 1097 lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~ 1174 (1991)
+|.+... ..|+...|.--+.----++..++|.++++..++. ++.-...|-.+...|-..++++.|...|..-.+ |
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 5555543 2344443333333333345555555555555543 222234455566666777778888877776654 4
Q ss_pred C-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 040435 1175 N-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCM 1253 (1991)
Q Consensus 1175 d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~L 1253 (1991)
+ +..|-.|...--+.|..-.|..++++.+..+ +-|...|...|..-.+.|+.+.|..+..+.+++ ...+...|..-
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEa 793 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEA 793 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHH
Confidence 3 4567766666667778888888888877654 346667888888888888888888888777764 44456778888
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
|.+..+.++-..+.+.+++.. -|+.+..+....+.....++.|..-|+++++.+|++..++..+-..+...|.-++
T Consensus 794 I~le~~~~rkTks~DALkkce----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495|consen 794 IWLEPRPQRKTKSIDALKKCE----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHhccCcccchHHHHHHHhcc----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHH
Confidence 888888887776666666654 3566777777777778888888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1334 SSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1334 a~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
-..++.+.... +|.-|..|+-|.
T Consensus 870 ~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 870 QKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHhcc--CCCCCcHHHHHh
Confidence 77777765543 567777887664
No 58
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.39 E-value=1.4e-07 Score=120.89 Aligned_cols=615 Identities=10% Similarity=0.056 Sum_probs=310.0
Q ss_pred cCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCchHHH
Q 040435 683 KNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGRLVHACLVKQG-YESFTSIGNALMDFYMKWRFPDSAV 761 (1991)
Q Consensus 683 ~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~~~~a~~i~~~~lk~g-~~~d~~~~n~Li~~y~k~G~~~~A~ 761 (1991)
-.|+.++|.+++.+..+.. |..+..|..|-..+-..|. .-+.+...++..- -+.|...|-.+-......|.++.|+
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd-~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGD-IEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHccc-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 3466667777766666554 3344445555444444331 1111222222222 2334556666666666666666666
Q ss_pred HHHhhcCCCChHHHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 040435 762 AVFDDCICRDSVSWN---IMIQGHLDHGTLGEGLWWFYKARVAGFEPNNS----ILVLVIQACRCLGAYYEGLQVHGYII 834 (1991)
Q Consensus 762 ~lfd~m~~~d~~s~n---~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~----ty~~lL~a~~~~g~~~~a~~l~~~~~ 834 (1991)
-.|.+..+.+..-|- --+..|-+.|+...|++-|.+|.+...+.|-. +--.+++.+...++.+.|.+.++...
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666655432222222 22334555666666666666665543211111 11122333333333344444443333
Q ss_pred HhC-CCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC------------
Q 040435 835 RSG-LWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG------------ 901 (1991)
Q Consensus 835 k~G-~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~------------ 901 (1991)
..+ -..+... +|.++..|.....++.|+.....+...
T Consensus 308 s~~~~~~~~ed------------------------------~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 308 SKEKDEASLED------------------------------LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred hhccccccccH------------------------------HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 311 1122233 334444444444444444444444330
Q ss_pred --------------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 902 --------------FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG--LGCDLFVGNSLIDMYAKCKDTDSAFKV 965 (1991)
Q Consensus 902 --------------~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g--~~pd~~v~naLI~~y~k~G~~e~A~~l 965 (1991)
.++.++... ..+.-++.+....+....+...+.+.. ..-+...|.-+.++|...|++.+|.++
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 011122212 112222344555555555666666665 333455677777777777777777777
Q ss_pred hccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHH----
Q 040435 966 FSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVIL---- 1036 (1991)
Q Consensus 966 f~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~---- 1036 (1991)
|..+.. .+...|--+..+|...|..++|.+.|..... ..|+.. .-.++-..+...|+.++|.++++.+.
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~ 514 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDG 514 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCc
Confidence 777654 2556777777777777777777777777755 234322 22233334456677777777666633
Q ss_pred ----HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--------------------------CchhhhhHHHHhhh
Q 040435 1037 ----RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--------------------------PDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1037 ----~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--------------------------~d~~syn~LI~~y~ 1086 (1991)
..+..|+....--..+.|.+.|+.++=..+-..|.. .....--.++.+-.
T Consensus 515 ~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~ 594 (895)
T KOG2076|consen 515 RNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRARE 594 (895)
T ss_pred cchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHh
Confidence 223445555555566677777776654333333221 00111111222222
Q ss_pred hcCChHHHH------HHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHHHHHHHHHHHhcc--ccch---hHHHHHHH
Q 040435 1087 LCGRPREAI------AVFQEMNQAQEKPNAI--TIINLLEACSVATELSSSKWAHGIAIRRCL--AEEV---AVGTAVVD 1153 (1991)
Q Consensus 1087 ~~g~~eeAl------~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a~~i~~~~~k~g~--~~d~---~v~naLI~ 1153 (1991)
+.++..... ..+.--...|+.-+.. -+.-++.+.++.+..++|..+...+..... .++. ..-...+.
T Consensus 595 k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~ 674 (895)
T KOG2076|consen 595 KATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLK 674 (895)
T ss_pred ccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHH
Confidence 222211100 1111111222222222 244555566677777777777666655421 1111 22334455
Q ss_pred HHHhcCCHHHHHHHHHhccCC-----C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHh
Q 040435 1154 MYAKCGAIEASRKAFDQISRK-----N---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA--CSH 1223 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~~-----d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a--c~~ 1223 (1991)
+....+++..|...+..|... + ...||...+.+.++|+-.--..++..... .+|+..-...++.+ ...
T Consensus 675 ~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~ 752 (895)
T KOG2076|consen 675 ASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFV 752 (895)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhh
Confidence 555667777777776666532 2 24666666666666544333333333222 22222112222222 234
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHH-HHHHHHH----------HcCCHHHHHHHHHHCccCCCC--CHHHHHHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYS-CMVDMLA----------RAGELDIAIDLINQMPDNLKA--TASAWGALLSA 1290 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~-~Li~~l~----------r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a 1290 (1991)
.+.+.-|++.+-.... ..|+...++ ||.-++. |.-.+-.+..++.+..+.-.+ -..+...+..+
T Consensus 753 ~~s~~~Al~~y~ra~~---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRa 829 (895)
T KOG2076|consen 753 NASFKHALQEYMRAFR---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRA 829 (895)
T ss_pred ccchHHHHHHHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5667778877665544 566633322 2222221 112234566666655442122 45788899999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCC------------chHHHHHHHHHHhCCCchhHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQN------------SAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~------------~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|..-|=+..|+..|+++++..|.+ -.+-..|.-+|-++|...-|..+.
T Consensus 830 yh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil 889 (895)
T KOG2076|consen 830 YHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQIL 889 (895)
T ss_pred HHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHH
Confidence 999999999999999999997643 123456788999999988877654
No 59
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=99.38 E-value=2.8e-13 Score=167.39 Aligned_cols=262 Identities=21% Similarity=0.294 Sum_probs=187.9
Q ss_pred chHHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEE
Q 040435 1716 VVQGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLI 1795 (1991)
Q Consensus 1716 ~~~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvi 1795 (1991)
++..++++...++|.+|.||-|.+|++++++.++||+|+...++|||.++|||..++|-.+|.+|-.+--...-=+.|+.
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~lgee~~~~~Q~l 133 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPELGEENGLTGQLL 133 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccccchhcCCCceeE
Confidence 47888889999999999999999999999999999999999999999999999999999999999844433333355999
Q ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccccccCCccccccccccccCC---------------CCCCcccHHHH
Q 040435 1796 LATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVRANDSASLVSITDICLKPLG---------------EDCASQSVLQY 1860 (1991)
Q Consensus 1796 i~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~~~~~~~~~tl~DiC~kp~~---------------~~C~i~S~l~y 1860 (1991)
|+++. .++.|||+++.|.+.+++-..+..+.|..-|+++++.||||||-+ -.|.+..+++.
T Consensus 134 IQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlDC 209 (1143)
T KOG1935|consen 134 IQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLDC 209 (1143)
T ss_pred EECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchhh
Confidence 98843 356799999999999999999999999888889999999999754 16999989887
Q ss_pred hhcCcC-----------------CCCCcc-------------Cc--------cc---ccccccccCCCcccccc-----C
Q 040435 1861 FKMDPE-----------------NYDSYG-------------GI--------EH---AEYCFQHYASSDTCLSA-----F 1894 (1991)
Q Consensus 1861 f~~~~~-----------------~~~~~~-------------~~--------~~---~~~c~~~~~~~~~c~~~-----~ 1894 (1991)
|-.... ++++.. +. .| -.-|.+ |..| .|-++ .
T Consensus 210 fWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~-Pldp-~CP~sApn~~s 287 (1143)
T KOG1935|consen 210 FWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLN-PLDP-ECPPSAPNKNS 287 (1143)
T ss_pred hcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCC-CCCC-CCCCCCccccC
Confidence 752221 111110 00 00 012432 3332 13221 1
Q ss_pred CCCCCcc--------------------cccCCcc---CCCcccccEEEEEEEecc---------------CCC-cchHhh
Q 040435 1895 KAPLDPS--------------------TVLGGFS---GNNYSEASAFIITYPVNN---------------AID-ETSKEN 1935 (1991)
Q Consensus 1895 g~pv~~~--------------------~~lGG~~---~~~~~~A~A~~lty~l~n---------------~~~-~~~~~~ 1935 (1991)
-+|.+-+ +++||.. .+...+|.|++-+|+|-. |.. ..+..-
T Consensus 288 ~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~ 367 (1143)
T KOG1935|consen 288 PQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAA 367 (1143)
T ss_pred CCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHH
Confidence 1222222 2455543 356789999998887731 111 122334
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCeEEEEEecccHHHHHhhhhcccccEE
Q 040435 1936 RKAVAWEKAFIQLAKEELLPMVQSSNLTLSFSSESSLEEELKRESTADVVTI 1987 (1991)
Q Consensus 1936 ~~a~~WE~~f~~~~~~~~~~~~~~~~l~vs~~aerSledEl~r~s~~dv~~~ 1987 (1991)
+.-.+|.+.|.+.+.+-. .+..-+|.-+++.|+.|-|++=+.-....|
T Consensus 368 ~vl~awQrnf~~~~~~~~----~~~~~~ih~fsStsldDiL~~Fs~~s~~~i 415 (1143)
T KOG1935|consen 368 EVLQAWQRNFTKRVYQHL----ANERRQIHPFSSTSLDDILEEFSQFSAISI 415 (1143)
T ss_pred HHHHHHHHHHHHHHHHHh----hhhcceecccccccHHHHHHHhcccchHHH
Confidence 566789999999987642 225678999999999999998665544433
No 60
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.35 E-value=5.1e-08 Score=124.68 Aligned_cols=557 Identities=13% Similarity=0.072 Sum_probs=342.7
Q ss_pred HHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHH
Q 040435 750 FYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEP-NNSILVLVIQACRCLGAYYE 825 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~P-d~~ty~~lL~a~~~~g~~~~ 825 (1991)
.|++ |++++|.+++.++.. ++...|-+|-..|-+.|+.+.++..+-. ...+.| |..-|..+-.-....|.++.
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3455 999999999998864 4678999999999999999998877643 333334 56788888888899999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHcCChHHHHHHHH
Q 040435 826 GLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDV--------ISWSVMIGGYVQSAEAFSGLRLFR 896 (1991)
Q Consensus 826 a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~--------~syn~LI~a~~~~G~~~eAl~lf~ 896 (1991)
|.-.+..+++.....-...| --..+|-+ |+...|..-|.++-+.+. ..---++..+...+.-+.|++.+.
T Consensus 226 A~~cy~rAI~~~p~n~~~~~-ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPSNWELIY-ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999998644333333 33567777 999888888877733211 122234566677777788888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC---------------------------CCCCHHHHHHH
Q 040435 897 QMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG---------------------------LGCDLFVGNSL 949 (1991)
Q Consensus 897 ~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g---------------------------~~pd~~v~naL 949 (1991)
......+-..+..+++.++..+......+.|......+..+. +.++..+. -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 877643444555566777777777777777766555554422 22233331 11
Q ss_pred HHHHH--hcCChHHHHHHhccCCC----CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 040435 950 IDMYA--KCKDTDSAFKVFSEMPQ----KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFV 1023 (1991)
Q Consensus 950 I~~y~--k~G~~e~A~~lf~~m~~----~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g 1023 (1991)
+-++. +.+...+++.-|-.... -++..|.-+..+|.+.|++.+|+.+|..+...-..-+...|..+-+++-..+
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 11222 33334444433322221 2455677788888899999999999988877655556677888888888888
Q ss_pred ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchh-----hh-------hHHHHhhhhcCCh
Q 040435 1024 HPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVV-----LW-------STMIAGFTLCGRP 1091 (1991)
Q Consensus 1024 ~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~-----sy-------n~LI~~y~~~g~~ 1091 (1991)
..++|.+.+..++... +.+..+--+|-..|-+.|+.++|.+.+..|..||.. .| -.....|.+.|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 8888888888887764 234455567777888888888888888887765521 11 1223445556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHH--
Q 040435 1092 REAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFD-- 1169 (1991)
Q Consensus 1092 eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~-- 1169 (1991)
++=+.+-.+|...+ .....+. - +..+.+.. .....+........-.++.+-.+.++.....+-..
T Consensus 543 E~fi~t~~~Lv~~~------~~~~~~f--~---~~~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~ 609 (895)
T KOG2076|consen 543 EEFINTASTLVDDF------LKKRYIF--P---RNKKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG 609 (895)
T ss_pred HHHHHHHHHHHHHH------HHHHHhc--c---hHHHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccch
Confidence 66555555554321 0000000 0 00000000 00000011112222233333333333222211111
Q ss_pred ------hccC---CCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHHHhcCCHHHHHHHH
Q 040435 1170 ------QISR---KNI-VSWSAMVAAYGMNGLAHEALALVAEMKLGGL--QPNAV--TT-LSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1170 ------~m~~---~d~-~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi--~Pd~~--T~-~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
.... .|. ..+.-+|..+++.++.++|+.+...+....+ .++.. .+ ...+.++...++...|..++
T Consensus 610 ~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~l 689 (895)
T KOG2076|consen 610 TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYL 689 (895)
T ss_pred hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 1111 122 2345567889999999999999998886542 22221 22 33455667899999999999
Q ss_pred HHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1235 NSMVQDHGVEPA---LEHYSCMVDMLARAGELDIAIDLINQMPDN----LKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1235 ~~M~~~~gi~P~---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
+.|+..++...+ ...|++....+.+.|+-.-=.+++...... .+|-...++.. ....+.+.-|...+-++
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~---~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHN---LFVNASFKHALQEYMRA 766 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechh---HhhccchHHHHHHHHHH
Confidence 999887665544 356776666677666554444555443321 12222222222 34566778899999999
Q ss_pred HhcCCCCchHHHHHHHHHHhC
Q 040435 1308 LELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1308 lel~P~~~~~yvlL~~lya~~ 1328 (1991)
+...|++|..-..|+.++-+.
T Consensus 767 ~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 767 FRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHhCCCCcHHHHHHHHHHHHH
Confidence 999999998877777665543
No 61
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=5.7e-09 Score=131.68 Aligned_cols=534 Identities=10% Similarity=0.021 Sum_probs=291.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCC
Q 040435 793 WWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERD 871 (1991)
Q Consensus 793 ~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d 871 (1991)
.++-.|...|+.|+.+||.+++.-|+..|+++.|- ++..|.-..+.....++++++..... ++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45566777888888888888888888888888777 88877777777777778888777666 6666655 677
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHH-HHh------CCCCCCCHHHHHHHHHHHHccC-C------hHHHHHHHHHHHHc
Q 040435 872 VISWSVMIGGYVQSAEAFSGLRLFRQ-MVS------GFKNEPDGQSLVSVLKACTNLR-D------LTMGRMVHGLVIYR 937 (1991)
Q Consensus 872 ~~syn~LI~a~~~~G~~~eAl~lf~~-M~~------~~gv~Pd~~T~~~lL~a~~~~g-~------~~~a~~l~~~m~k~ 937 (1991)
..+|+.|..+|.+.|+... ++..++ |.. ..|+.--..-|-..+..|-+.- + ..--+.+++..++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222222 211 0011111111222222211100 0 00011222333333
Q ss_pred CCC-CCHHHHHH---HHHHHH-hcCChHHHHHHhccCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHH
Q 040435 938 GLG-CDLFVGNS---LIDMYA-KCKDTDSAFKVFSEMP-QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEIT 1011 (1991)
Q Consensus 938 g~~-pd~~v~na---LI~~y~-k~G~~e~A~~lf~~m~-~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T 1011 (1991)
+.. |...-++. .++-.. -...+++-........ .++..++.+++..-..+|+.+.|..++.+|.+.|+..+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 211 11000000 111111 1122333333323333 37888999999998999999999999999999999888888
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCCh
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRP 1091 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~ 1091 (1991)
|..+|-+ .++......+..-|...|+.|+..|+.--+-...+.|....+.+..+.-.--....+..+..|...+.+.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l 318 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRL 318 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHH
Confidence 8887765 6777888888888888999999988887666666655533322221110001122233333332222222
Q ss_pred H-----HHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHH
Q 040435 1092 R-----EAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRK 1166 (1991)
Q Consensus 1092 e-----eAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~ 1166 (1991)
+ -....+++..-.|+.-....| ++..-....|.-+...++.+.+..--...+. .-+++| .+.+.+
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~----~~V~a~-----~~~lrq 388 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSG----QNVDAF-----GALLRQ 388 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCc----chHHHH-----HHHHHH
Confidence 1 122222332233433333222 2222222345555555555554332211111 111111 123445
Q ss_pred HHHhccCCCHh-HHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHHHH
Q 040435 1167 AFDQISRKNIV-SWSAMVAAYGM---NGLAHEALALVAEM------------KL----GGLQP-------NAVTTLSVLS 1219 (1991)
Q Consensus 1167 lf~~m~~~d~~-s~n~LI~ay~~---~G~~~eAl~lf~eM------------~~----~Gi~P-------d~~T~~~LL~ 1219 (1991)
.|.+...+... .++ .-.+... .....+..++.... .. .-..| =...-+.++-
T Consensus 389 yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 55555443221 222 1111111 11111111111111 00 00111 0112344555
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCCHHHHHHHHHHHHHcCC
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKATASAWGALLSACRSYGN 1296 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd~~~~~~Ll~a~~~~g~ 1296 (1991)
+|.+.-+..+++..-+.. +.+ +-| ..|..||+.+.+..++++|..+.++.... +.-|..-+..+..-..+++.
T Consensus 468 ~l~se~n~lK~l~~~eky-e~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKY-EDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-HHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 666665666666544433 221 222 67999999999999999999999988642 33355567788888899999
Q ss_pred hhHHHHHHHHHHh---cCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEE
Q 040435 1297 TELGAGATSRILE---LEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSL 1354 (1991)
Q Consensus 1297 ~e~A~~~~e~lle---l~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~ 1354 (1991)
...+..+.+++.+ ..|.-......+.|--+..|.-+...++...+...|+.- .|.-|
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 9889888888766 233334556667777788899888888888899999866 35444
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.28 E-value=4.4e-07 Score=111.57 Aligned_cols=399 Identities=12% Similarity=0.064 Sum_probs=304.4
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHH
Q 040435 920 NLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSL 996 (1991)
Q Consensus 920 ~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~l 996 (1991)
...+.+.|+-++...++.- +.+.. |.-+|++...++.|.+++....+ .+...|.+-..-=-++|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555544431 11222 33344555556667666665543 3666776655555567777777666
Q ss_pred HHH----HhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc--hhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 997 LYS----MGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN--ELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 997 f~~----M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d--~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+.+ +...|+..+...|..=..+|-..|..-.+..|...++..|++.. ..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 654 46678999999888888899999999999999998888887643 457888888899999999999999887
Q ss_pred CC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1071 KK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1071 ~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.+ .+...|...+..=-.+|..++...+|++.... +.-....+.......-..|++..|+.++..+...... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 75 46678888877777789999999999998875 3333444444445556789999999999999887643 7778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHG 1224 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~ 1224 (1991)
+-+-+..-.....++.|+.+|.+... ++...|.--+...--.+..++|++++++.++ .-|+-. .|..+...+...
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHH
Confidence 88889999999999999999998864 6777888777777788999999999999887 346654 566777788899
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
++++.|.+.|..=.+ .-| .+..|-.|.++=-+.|.+-.|..++++..-+.+.+...|-..+..-.++|+.++|+.+
T Consensus 699 ~~ie~aR~aY~~G~k---~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK---KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHhccc---cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 999999998875543 345 4678999999999999999999999998877788999999999999999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
..++++--|.+...+.--..+....++
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCccc
Confidence 999999999876655544444444444
No 63
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=5e-11 Score=144.11 Aligned_cols=252 Identities=15% Similarity=0.109 Sum_probs=117.4
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLE-ACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~-a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
.+.+.|++++|++++++-......|+...|-.++. .+...++.+.|...++.+...+.. +...+..++.. ...++++
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccc
Confidence 34444555555555533322211233333333222 222344555555555555544322 34445556666 5778888
Q ss_pred HHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1163 ASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1163 ~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
+|.+++...-+ ++...+..++..+.+.|+++++.+++++..... .+.+...|..+...+.+.|+.++|.+.+++.++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888876643 566778888899999999999999999987543 345667777888888999999999999999987
Q ss_pred hcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
..|+ ......++.++...|+.++|.++++......+.|+..|..+..++...|+.+.|...++++++..|+|+...
T Consensus 175 ---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 175 ---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp ---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHH
T ss_pred ---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccc
Confidence 5785 778889999999999999999999887664456778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..++.++...|+.++|..+++.
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHT--------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999998874
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.08 E-value=7.5e-07 Score=104.61 Aligned_cols=274 Identities=13% Similarity=0.070 Sum_probs=199.8
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCchhhhhH----HH-HhhhhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1052 DGYSKCHLVELAWKLFNDVKKPDVVLWST----MI-AGFTLCG-RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1052 ~~y~k~G~l~~A~~lf~~m~~~d~~syn~----LI-~~y~~~g-~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
.-|.+.|+++.|.+++.-..+.|..+-.+ |- --|.+-| ++.+|...-+...... +-+......--+..-..|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 35778999999999988887655443222 21 1222222 3445554444332211 1111111111111224689
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS---RKNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~---~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
+++|...+.+++...-.....+||. .-.|-+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++-+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999887765555555553 335678899999999998765 367777777888898899999999999766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA 1281 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~ 1281 (1991)
... ++.|.....-|...|-+.|+-.+|.+++-.- |..-| +.++..-|..-|....-+++|..+|++..- +.|+.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-iqp~~ 659 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-IQPNQ 659 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-cCccH
Confidence 542 4446677788888999999999999987643 44555 788888888888999999999999998764 78999
Q ss_pred HHHHHHHHHH-HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1282 SAWGALLSAC-RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1282 ~~~~~Ll~a~-~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
+-|-.++..| ++.||+..|...|+.+...-|++..-.-.|..++...|.-+
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 9999999877 56899999999999999999999998889999998888754
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=8.4e-06 Score=97.42 Aligned_cols=475 Identities=10% Similarity=0.015 Sum_probs=326.8
Q ss_pred CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMC---ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~---~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~~a~~l 930 (1991)
+++..|+.+|++.. .++...|---+..=.++.....|..++++.... .|-.. -+---+-.=-..|++..|+++
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46778888888763 356777777777778888888888888887653 33321 111122222346788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccC--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEM--PQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVD 1008 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m--~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd 1008 (1991)
|..-.+ .+|+...|.+.|+.=.+-..++.|+.++++. ..|++.+|---..-=.++|+...|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 887764 5788888888888888888888888888874 4688888877777777788888888888776542 122
Q ss_pred HHHHHHHHHHHh----ccCChhhHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCH---HHHHHH-----HHhcCC---
Q 040435 1009 EITLVNILQICK----CFVHPMECKSVHCVILRRAFES-NELVLNSLIDGYSKCHLV---ELAWKL-----FNDVKK--- 1072 (1991)
Q Consensus 1009 ~~T~~~lL~a~~----~~g~~~~a~~i~~~~~~~g~~~-d~~v~naLI~~y~k~G~l---~~A~~l-----f~~m~~--- 1072 (1991)
...-..++.+++ +....+.|..++..++..-... ....|..+...=-+-|+. +++.-- ++.+.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 333333444443 3456777888888877653222 134455554444445553 333322 222222
Q ss_pred CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHH---HhhccChHHHHHHHHHHHHhccc
Q 040435 1073 PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-------TIINLLEA---CSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1073 ~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-------T~~~lL~a---~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
-|-.+|--.+..-...|+.+...++|++.... +.|-.. .|.-+=-+ =....+.+.+++++...++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 35567777777777789999999999998764 555321 12111112 2356788899999999888 456
Q ss_pred cchhHHHHHHHHHH----hcCCHHHHHHHHHhcc--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040435 1143 EEVAVGTAVVDMYA----KCGAIEASRKAFDQIS--RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS 1216 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~----k~G~~e~A~~lf~~m~--~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~ 1216 (1991)
....++.-+=-||+ ++.++..|.+++.... .|-..++...|..-.+.+.++....+|++.++-+ +-|..+|..
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 66777777766776 5789999999998765 3777888888888889999999999999999854 346778887
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH----
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR---- 1292 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~---- 1292 (1991)
....-...|+.++|..+|+..+....++-....|.+.|+.=...|.++.|..+++++.++ .+...+|-++..--.
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-t~h~kvWisFA~fe~s~~~ 555 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-TQHVKVWISFAKFEASASE 555 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-cccchHHHhHHHHhccccc
Confidence 777777899999999999988765444444567888888888999999999999999874 334558887765443
Q ss_pred -HcC-----------ChhHHHHHHHHHHh----cCCCCchHHHHH---HHHHHhCCCchhHHHHHHHH
Q 040435 1293 -SYG-----------NTELGAGATSRILE----LEAQNSAGYLLA---SSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1293 -~~g-----------~~e~A~~~~e~lle----l~P~~~~~yvlL---~~lya~~G~~~ea~~vr~~m 1341 (1991)
..+ +...|..+|+++.. .+|. ..-..+| -+.=...|.-.+...|...|
T Consensus 556 ~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~K-eeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 556 GQEDEDLAELEITDENIKRARKIFERANTYLKESTPK-EERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 334 56788888888865 3332 2222333 34555668777877887766
No 66
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=1.9e-08 Score=125.39 Aligned_cols=201 Identities=15% Similarity=0.152 Sum_probs=144.6
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
...+|.++...|.-+++.+.|++.|++..+ +.|+ ..+.|+.+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~----------------------------------faYayTLlGh 463 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPR----------------------------------FAYAYTLLGH 463 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCc----------------------------------cchhhhhcCC
Confidence 456788888888888888888888877654 2331 1223333333
Q ss_pred HHHhcCCHHHHHHHHHhccCCCHhHHHH---HHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISRKNIVSWSA---MVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEE 1229 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~~d~~s~n~---LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~ 1229 (1991)
-+.....+|.|...|......|...||+ |...|.+.++.+.|+-.|++..+ +.| +.+....+...+.+.|..|+
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~ 541 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDK 541 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhH
Confidence 4444566778888888777766665555 45678888888999888888876 445 44555666667778888899
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
|+++++++.. ++| ++-.--..+..+...+++++|+..++++++-.+.+..++..|...|++.|+.+.|..-+--++
T Consensus 542 AL~~~~~A~~---ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 542 ALQLYEKAIH---LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHh---cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 9998888765 566 344444456667778888999988888887555567777778888888888888888888888
Q ss_pred hcCCCCc
Q 040435 1309 ELEAQNS 1315 (1991)
Q Consensus 1309 el~P~~~ 1315 (1991)
+++|.-.
T Consensus 619 ~ldpkg~ 625 (638)
T KOG1126|consen 619 DLDPKGA 625 (638)
T ss_pred cCCCccc
Confidence 8888643
No 67
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.8e-07 Score=110.04 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=160.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
.+...+.+.|+-.++.++|...|++..+ .....|+.|..-|....+...|++-++..++-. +-|-..|-.|..+|.
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYE 409 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHH
Confidence 4455667788888999999999998875 356789999999999999999999999998753 448889999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
-.+...=|+-+|++..+ ++| |...|.+|.+.|.+.++++||++.+.+.......+..++..|...+...++.++|.
T Consensus 410 im~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999998865 788 68999999999999999999999999987543445689999999999999999999
Q ss_pred HHHHHHHh-------cCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1302 GATSRILE-------LEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1302 ~~~e~lle-------l~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..+++-++ .+|+...+...|++-+.+.++|++|..
T Consensus 487 ~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 487 QYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 99999888 445555666778999999999999775
No 68
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.01 E-value=2.1e-07 Score=118.23 Aligned_cols=286 Identities=11% Similarity=0.009 Sum_probs=183.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhh--hhHHHHHHhcCCHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVL--NSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~--naLI~~y~k~G~l~~A~ 1064 (1991)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+...+..+.+.. |+...+ -.....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 356666665555443321111 1112222233345555555555555554432 332222 23356677788888888
Q ss_pred HHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc
Q 040435 1065 KLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL 1141 (1991)
Q Consensus 1065 ~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~ 1141 (1991)
..++++.+ .+......+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 88887764 34556677778888888888888888888876544322 111000
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
...+..++....+..+.+...++++.+.+ .+......+..++...|+.++|.+++++..+. .||.. ..++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHH
Confidence 00111222222333445566666666653 46778888888899999999999999888773 45552 1233
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
.+....++.+++.+..+...+. .| |...+.++..++.+.|++++|.+.|+.+.+ ..|+...+..|...+...|+.
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-~~P~~~~~~~La~~~~~~g~~ 377 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-QRPDAYDYAWLADALDRLHKP 377 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCH
Confidence 3444568889999998888763 45 466788888999999999999999998876 478888888888899999999
Q ss_pred hHHHHHHHHHHhcC
Q 040435 1298 ELGAGATSRILELE 1311 (1991)
Q Consensus 1298 e~A~~~~e~llel~ 1311 (1991)
++|...+++.+++-
T Consensus 378 ~~A~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999888754
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.99 E-value=3.1e-05 Score=95.96 Aligned_cols=526 Identities=13% Similarity=0.123 Sum_probs=278.4
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHhhcCC-----CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 741 TSIGNALMDFYMKWRFPDSAVAVFDDCIC-----RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQ 815 (1991)
Q Consensus 741 ~~~~n~Li~~y~k~G~~~~A~~lfd~m~~-----~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~ 815 (1991)
+.+|-.-+....+.|++-.-++.|++... .....|...|.-..+.|-++-++.+|++.++- ++..-..-+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 35666677778899999999999987532 24456888888888899999999999998763 3334667778
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHHhh----CCHHHHHHHHHhcCCC--C--HHHHHHHHHH
Q 040435 816 ACRCLGAYYEGLQVHGYIIRSG------LWAVHSVQNSVLSMYVD----ADMECARKLFDEMCER--D--VISWSVMIGG 881 (1991)
Q Consensus 816 a~~~~g~~~~a~~l~~~~~k~G------~~~d~~v~naLi~~yak----g~~e~A~~vf~~m~~~--d--~~syn~LI~a 881 (1991)
-++..+++++|.+.++.++... ...+.-.|.-+-+..++ +.--....++..+..+ | ...|++|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 8889999999999988876432 13444566666666665 2222334455555443 3 4689999999
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChH
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYR-GLGCDLFVGNSLIDMYAKCKDTD 960 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~-g~~pd~~v~naLI~~y~k~G~~e 960 (1991)
|.+.|.+++|.++|.+.... ..+..-|+.+..+++.......+..+- ..... |-+-+.. +++
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHH
Confidence 99999999999999988763 344556777777776543222221111 01111 1111111 122
Q ss_pred HHHHHhccCC---------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC------HHHHHHHHHHH
Q 040435 961 SAFKVFSEMP---------------QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVD------EITLVNILQIC 1019 (1991)
Q Consensus 961 ~A~~lf~~m~---------------~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd------~~T~~~lL~a~ 1019 (1991)
-.+.-|+.+. ..++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+-+-|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHH
Confidence 2222232222 1255566554442 346666667777666442 2221 12355556666
Q ss_pred hccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC-CchhhhhHHHHhhhhcCChHHHH
Q 040435 1020 KCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK-PDVVLWSTMIAGFTLCGRPREAI 1095 (1991)
Q Consensus 1020 ~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~~g~~eeAl 1095 (1991)
-+.|+++.|+.+|+...+..++.- ..+|..-..+=.+..+++.|+++.+.... |.... ..|..++..-++
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~- 471 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQA- 471 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHH-
Confidence 677777777777777766554322 33455445555556666677766665432 11100 111111111110
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--
Q 040435 1096 AVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-- 1173 (1991)
Q Consensus 1096 ~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-- 1173 (1991)
.+++ +...++..+.---..|-++..+.+++.++...+.....+.|- ...+-...-++++.++|++-..
T Consensus 472 rlhr---------SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 472 RLHR---------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHH---------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccC
Confidence 0000 111222222222333445555555555555444322222221 1111223334555555554332
Q ss_pred --CCH-hHHHHHHHHHHH-c--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhHH------
Q 040435 1174 --KNI-VSWSAMVAAYGM-N--GLAHEALALVAEMKLGGLQPNAVTTLSVLSAC--SHGGLVEEGLSFFNSMVQ------ 1239 (1991)
Q Consensus 1174 --~d~-~s~n~LI~ay~~-~--G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac--~~~G~~e~A~~i~~~M~~------ 1239 (1991)
|++ ..||.-+.-+.+ . .+.+.|..+|++.++ |.+|...-+..|+.|- ...|....|+.++++...
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~ 620 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ 620 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH
Confidence 333 245544433332 1 135555555555554 4444443333333221 123444444444444321
Q ss_pred --------------hcCC-------------CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHH
Q 040435 1240 --------------DHGV-------------EPALE---HYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGAL 1287 (1991)
Q Consensus 1240 --------------~~gi-------------~P~~~---~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~L 1287 (1991)
-+|+ -|+.. ..--..++=.+.|..+.|..++.-..+-..| +...|.+-
T Consensus 621 ~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~tw 700 (835)
T KOG2047|consen 621 RLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTW 700 (835)
T ss_pred HHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHH
Confidence 1222 23211 1122344555678888888887766553333 56677777
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1288 LSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
-.--.+|||-+ -++.|+.+.
T Consensus 701 k~FEvrHGned----T~keMLRik 720 (835)
T KOG2047|consen 701 KEFEVRHGNED----TYKEMLRIK 720 (835)
T ss_pred HHHHHhcCCHH----HHHHHHHHH
Confidence 77777888833 344455443
No 70
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.99 E-value=1.2e-07 Score=120.34 Aligned_cols=273 Identities=8% Similarity=-0.001 Sum_probs=197.7
Q ss_pred cCCHHHHHHHHHhcCCC--c-hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhhccChHHHHH
Q 040435 1057 CHLVELAWKLFNDVKKP--D-VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII--NLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~~--d-~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~--~lL~a~a~~g~le~a~~ 1131 (1991)
.|+++.|++......+. . ...|-.......+.|+.++|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57777777777665442 1 222222233336778888888888887653 45543332 22345667788888888
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCH-----------hHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNI-----------VSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~-----------~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+... ..|..++.........+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 887777766 44567778888889999999999988888875211 134444444444555666667777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC
Q 040435 1201 EMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT 1280 (1991)
Q Consensus 1201 eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd 1280 (1991)
.+.+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++.+.+++..+..+.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 66432 345777888899999999999999999998865 34554222 2233335599999999999998877778
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1281 ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1281 ~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..+.++...|...|++++|++.++++++.+|++.. +..|+.++.+.|+-++|...++
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 888999999999999999999999999999997644 8899999999999999988776
No 71
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=7.4e-07 Score=104.66 Aligned_cols=159 Identities=13% Similarity=0.153 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
+..+.-.+...|....+...|.+++..... .|....+.|...|-+.|+-.+|.+.+-+--.- ++-|..|..-|..-
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ay 635 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAY 635 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHH
Confidence 344555566677777788888888776653 46777888888888888888888765543321 34466666666666
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML-ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l-~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
|....-.++++.+|++.. -+.|+..-|..||..+ -|.|++..|.++++....+++.|......|+..|...|-. .
T Consensus 636 yidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d 711 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-D 711 (840)
T ss_pred HHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-h
Confidence 777778888999998763 3889988888887654 5678999999999988877888888888888888777643 3
Q ss_pred HHHHHHHH
Q 040435 1300 GAGATSRI 1307 (1991)
Q Consensus 1300 A~~~~e~l 1307 (1991)
+.+..+++
T Consensus 712 ~key~~kl 719 (840)
T KOG2003|consen 712 AKEYADKL 719 (840)
T ss_pred HHHHHHHH
Confidence 45544444
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=6.5e-08 Score=112.10 Aligned_cols=199 Identities=12% Similarity=0.053 Sum_probs=167.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
....+..+...|.+.|++++|...|++..+ .+...+..+...|...|++++|++.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345667788899999999999999998764 346788889999999999999999999998754 3355677778888
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...|++++|.++++.+.+..........+..+...+.+.|++++|.+.+++.....+.+...|..+...+...|+.+.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998763222224567788889999999999999999998775555677899999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...++++++..|.++..+..++.++...|++++|..+...+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898888888999999999999999988776654
No 73
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.95 E-value=3.3e-08 Score=123.19 Aligned_cols=274 Identities=11% Similarity=-0.011 Sum_probs=200.0
Q ss_pred CHHHHHHHHHhcCC--Cchhhh--hHHHHhhhhcCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHhhccChHHHHHH
Q 040435 1059 LVELAWKLFNDVKK--PDVVLW--STMIAGFTLCGRPREAIAVFQEMNQAQ-E-KPNAITIINLLEACSVATELSSSKWA 1132 (1991)
Q Consensus 1059 ~l~~A~~lf~~m~~--~d~~sy--n~LI~~y~~~g~~eeAl~lf~~M~~~G-v-~Pd~~T~~~lL~a~a~~g~le~a~~i 1132 (1991)
...+|...|..+++ ++.. | .-+..+|...+++++|.++|+..++.. . .-+...|+++|--+-+. ++ ...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v~--Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--VA--LSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--HH--HHH
Confidence 46788888888664 4444 4 345678888999999999999987742 1 12456777777554332 11 111
Q ss_pred HHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1133 HGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1133 ~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
+..-.-.--+..+.+|.++.+.|+-.++.+.|++.|++... | ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 11111112244678899999999999999999999998875 3 567888888888888889999999988763 334
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1210 NA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1210 d~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
+. ..|-.+...|.+.+.++.|.-.|+.+++ +.|. .....++...+-+.|+.|+|+++++++..-.+.|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 2455667778899999999999988764 8884 66777788888899999999999998865334455555555
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...+...++.++|...+|++.++-|+++..|.+++.+|...|+.+.|..-.-.+-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 6666777888999999999999999999999999999999999888766555443
No 74
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.92 E-value=2.1e-05 Score=94.07 Aligned_cols=433 Identities=11% Similarity=0.040 Sum_probs=315.0
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDS 961 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~ 961 (1991)
=...+++..|..+|.+.+.. -.-+...+.--+..=.+...+..|+.+++..+..-...| ..|-..+.|=-..|++..
T Consensus 83 Eesq~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~ymEE~LgNi~g 159 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIYMEEMLGNIAG 159 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhcccHH
Confidence 34466788899999998863 344555566666666788899999999999987543333 345556666677899999
Q ss_pred HHHHhccCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh-
Q 040435 962 AFKVFSEMP--QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRR- 1038 (1991)
Q Consensus 962 A~~lf~~m~--~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~- 1038 (1991)
|+++|++-. +|+..+|++.|.-=.+....+.|..+|++..- +.|+..+|.-..+-=-+.|....+.+++..+++.
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999999854 69999999999999999999999999999875 5699999988888778889999999999988764
Q ss_pred cC-CCchhhhhhHHHHHHhcCCHHHHHHHHHhcC----C-CchhhhhHHHHhhhhcCCh---HHHHHH-----HHHHHHC
Q 040435 1039 AF-ESNELVLNSLIDGYSKCHLVELAWKLFNDVK----K-PDVVLWSTMIAGFTLCGRP---REAIAV-----FQEMNQA 1104 (1991)
Q Consensus 1039 g~-~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~----~-~d~~syn~LI~~y~~~g~~---eeAl~l-----f~~M~~~ 1104 (1991)
|- ..+...+.+....=.++..++.|.-+|+-.. + +....|.....-=-+-|+. ++++-- |+.+.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 21 1233445555555556788899988886443 2 2233444443333334443 344322 3333332
Q ss_pred CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc------hhHHH---HHHHHHHhcCCHHHHHHHHHhccC--
Q 040435 1105 QEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE------VAVGT---AVVDMYAKCGAIEASRKAFDQISR-- 1173 (1991)
Q Consensus 1105 Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d------~~v~n---aLI~~y~k~G~~e~A~~lf~~m~~-- 1173 (1991)
+ .-|-.|+--.|.--...|+.+..+++++.++..-.+.. ..+|- -.+-.-....+++.+.++|+...+
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 2 33555666667777778999999999999886532221 11111 111111246788999999987765
Q ss_pred C-CHhHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CH
Q 040435 1174 K-NIVSWSAMVAAY----GMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-AL 1247 (1991)
Q Consensus 1174 ~-d~~s~n~LI~ay----~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~ 1247 (1991)
| ...|+..+--.| .++.+...|.+++...+ |.-|-..+|...|..-.+.+.+|+...+++..++ ..| +.
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c 471 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENC 471 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhh
Confidence 2 334555544444 45678999999998876 6789999999999999999999999999999976 677 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
.+|.-...+=...|+.+.|..+|+-+... ...-...|.+.|.--...|..+.|..+++++++..+... .++..+..-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHh
Confidence 78888888888899999999999987653 233467899999988899999999999999999998765 577776654
Q ss_pred H
Q 040435 1326 A 1326 (1991)
Q Consensus 1326 a 1326 (1991)
+
T Consensus 551 ~ 551 (677)
T KOG1915|consen 551 A 551 (677)
T ss_pred c
Confidence 4
No 75
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.5e-06 Score=100.93 Aligned_cols=250 Identities=8% Similarity=0.027 Sum_probs=177.8
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHhcCCH
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL--AEEVAVGTAVVDMYAKCGAI 1161 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~--~~d~~v~naLI~~y~k~G~~ 1161 (1991)
+|-.....++++.-.......|+.-+...-+-.-.+.-...++++|..+|+.+.+... -.|..+|+.++-.-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3334445556666555555555433333222222233355566777777777666521 11444555444322222222
Q ss_pred HH-HHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1162 EA-SRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1162 e~-A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
.- |..++ .+.+=-..|..++.+-|+-.++.++|+..|++.++. .|. ...|+.+..-|....+...|.+.++..++
T Consensus 316 s~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 316 SYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred HHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 21 22222 222223445555666777788999999999999874 454 44577777889999999999999999976
Q ss_pred hcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1240 DHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1240 ~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.| |-..|-.|..+|.-.+...-|+-+|++..+--+.|..+|.+|+.+|.+.++.++|++.|++++..+-.+..++
T Consensus 393 ---i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 393 ---INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred ---cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 777 6789999999999999999999999999874455889999999999999999999999999999988888999
Q ss_pred HHHHHHHHhCCCchhHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+.|+++|-..++.++|+....
T Consensus 470 ~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 999999999999999887554
No 76
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.91 E-value=4.1e-09 Score=127.53 Aligned_cols=254 Identities=13% Similarity=0.127 Sum_probs=108.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHh-cCC----CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 040435 1049 SLIDGYSKCHLVELAWKLFND-VKK----PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVA 1123 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~-m~~----~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~ 1123 (1991)
.+..++.+.|++++|.+++++ +.. .|..-|..+.......++.++|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 345667778888888888843 222 24445555555566677888888888888765422 33344444444 567
Q ss_pred cChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHHcCCHHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
++.+.|..+.....+.. ++...+..++..|.+.|+++++..+++.+.. .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777766555443 4555667788888899999999999888642 4667888888999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1199 VAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1199 f~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
+++..+ ..|+ ......++..+...|+.+++.++++...+. ...+...+..+..+|...|+.++|...+++.....
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999987 4565 566778888888999999999998888664 24456678888999999999999999999987655
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+.|+.+...+..++...|+.++|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 668888999999999999999999998888753
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.90 E-value=8.7e-07 Score=113.14 Aligned_cols=290 Identities=12% Similarity=0.005 Sum_probs=169.6
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
.|+++.|.+.+.+..+. .|+.. .+-..-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 46666666666554432 23322 2222233344455666665555555443322222233334566667777777777
Q ss_pred HHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccc
Q 040435 1066 LFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1066 lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
.++.+.+ | +...+..+...|.+.|++++|.+++..+.+.++.+..........+
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a----------------------- 231 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA----------------------- 231 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-----------------------
Confidence 7777664 3 4445666777777777777777777777776533222111000000
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT---LS 1216 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~---~~ 1216 (1991)
+..+++.-......+...+.++...+ .+...+-.+...+...|+.++|++++++..+. .||.... ..
T Consensus 232 -----~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l 304 (409)
T TIGR00540 232 -----EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLC 304 (409)
T ss_pred -----HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHH
Confidence 11111111112223444455555543 47788888888999999999999999998874 3554421 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--CccCCCCCHHHHHHHHHHHHHc
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQ--MPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~--m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
........++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. +.+ ..|+...+..|...+...
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~-~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK-EQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh-cCCCHHHHHHHHHHHHHc
Confidence 11222345677778888877766422223224556777888888888888888883 333 457777777888888888
Q ss_pred CChhHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILE 1309 (1991)
Q Consensus 1295 g~~e~A~~~~e~lle 1309 (1991)
|+.++|.+++++.+.
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888887655
No 78
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.81 E-value=1.3e-06 Score=111.47 Aligned_cols=277 Identities=11% Similarity=0.018 Sum_probs=167.3
Q ss_pred cCCHHHHHHHHHhcCC--Cch-hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK--PDV-VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI--TIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~--~d~-~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a~~ 1131 (1991)
.|+++.|.+.+.+..+ |+. ..+-.....+.+.|+.++|.+.+.+..+.. |+.. .-..........|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4555555555544432 211 111222233444455555555555544321 2221 11112333444555555555
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CHhHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK---NIVSWS----AMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~---d~~s~n----~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.+..+.+.. +.+..+...+...|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555554 334445556666666667777777666666532 222221 111122223333334445555554
Q ss_pred CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHH--HHcCCHHHHHHHHHHCccCCC
Q 040435 1205 GGL---QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-SCMVDML--ARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1205 ~Gi---~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-~~Li~~l--~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
... +.+...+..+...+...|+.++|.+.+++..+ ..|+.... -.++..+ ...++.+.+.+.+++..+..+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~---~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK---KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 13677788888999999999999999999876 35553311 0122222 335788899999988877555
Q ss_pred CCH--HHHHHHHHHHHHcCChhHHHHHHH--HHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1279 ATA--SAWGALLSACRSYGNTELGAGATS--RILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1279 pd~--~~~~~Ll~a~~~~g~~e~A~~~~e--~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
.|+ ....+|...|.+.|++++|.+.++ .+++..|++.. +..++.++.+.|+.++|.++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 566 788899999999999999999999 57788897665 66999999999999999988763
No 79
>PF13041 PPR_2: PPR repeat family
Probab=98.81 E-value=9e-09 Score=89.66 Aligned_cols=50 Identities=26% Similarity=0.484 Sum_probs=48.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~ 1223 (1991)
||+++||+||.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1e-05 Score=97.55 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=147.8
Q ss_pred ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1123 ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1123 ~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
.|+.-.+.+-+..+++....++. .|--+..+|....+-++..+.|++..+ .|..+|..-...+.-.+++++|+.=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665433322 244455667777888888888887764 24445555555555667788888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC
Q 040435 1200 AEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
++.+. +.|+ ...|.-+--+..+.+.+++++..|++.+++ +.-.++.|+.....|...++++.|.+.++...+ +.
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-LE 492 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-LE 492 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-hc
Confidence 88876 4453 445666666666888888899999888765 444578888888888889999999988887754 23
Q ss_pred CC---------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1279 AT---------ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1279 pd---------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
|. +.+-.+++-.- =.+++.+|+.+..++++++|...-+|..|+.+-...|+.++|..+..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 32 23333333322 23788999999999999999999999999999999999988887765
No 81
>PF13041 PPR_2: PPR repeat family
Probab=98.77 E-value=1.3e-08 Score=88.66 Aligned_cols=50 Identities=24% Similarity=0.403 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040435 770 RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRC 819 (1991)
Q Consensus 770 ~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~ 819 (1991)
||+++||+||.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 82
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.74 E-value=0.00026 Score=88.01 Aligned_cols=519 Identities=12% Similarity=0.083 Sum_probs=294.8
Q ss_pred CchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040435 756 FPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVA-GFEPNNSILVLVIQACRCLGAYYEGLQVHGYII 834 (1991)
Q Consensus 756 ~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~-gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~ 834 (1991)
.++.+......||. .|-.-+.-+..+|+.......|++.+.. .+.-....|...++-....+-.+.+..++.+.+
T Consensus 90 c~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 90 CFERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 35677777777764 5777777778889999888888887653 222233467777777777777777888887777
Q ss_pred HhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCH----------HHHHHHHHHHHHcCChHHH---HHHHHHHHh
Q 040435 835 RSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDV----------ISWSVMIGGYVQSAEAFSG---LRLFRQMVS 900 (1991)
Q Consensus 835 k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~----------~syn~LI~a~~~~G~~~eA---l~lf~~M~~ 900 (1991)
+... ...+-.|..+++ +++++|.+.+..+...|. ..|..+-.-.+++-+.-.. -.+++.+..
T Consensus 166 k~~P----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~ 241 (835)
T KOG2047|consen 166 KVAP----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR 241 (835)
T ss_pred hcCH----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc
Confidence 6532 224445555566 677777777776644332 2333333333332221111 112222211
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHH
Q 040435 901 GFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWN 978 (1991)
Q Consensus 901 ~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n 978 (1991)
.-+|.. ...|++|.+-|.+.|.++.|..+|++..+. .+.-++
T Consensus 242 ---rftDq~---------------------------------g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt 285 (835)
T KOG2047|consen 242 ---RFTDQL---------------------------------GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT 285 (835)
T ss_pred ---cCcHHH---------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH
Confidence 122221 235566666666666666666666553321 111122
Q ss_pred HHHHHHHh----------------cCC------HHHHHHHHHHHhcCC-CC---------C-CHHHHHHHHHHHhccCCh
Q 040435 979 SALSGLVV----------------NEK------YSEALSLLYSMGKGV-NE---------V-DEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 979 ~LI~a~~~----------------~g~------~~eAl~lf~~M~~~G-i~---------P-d~~T~~~lL~a~~~~g~~ 1025 (1991)
.+..+|++ .|+ .+-.+.-|+.+...+ +- | +..+|..-.. ...|+.
T Consensus 286 ~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~ 363 (835)
T KOG2047|consen 286 QIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNA 363 (835)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCCh
Confidence 22222221 111 122233333332221 00 1 1111211111 123445
Q ss_pred hhHHHHHHHHHHhcC-----CCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch-------hhhhHHHHhhhhcCChHH
Q 040435 1026 MECKSVHCVILRRAF-----ESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV-------VLWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~-----~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~-------~syn~LI~~y~~~g~~ee 1093 (1991)
.+....+..+++.-- -.-...|..+.+.|-..|+++.|+.+|++..+-+- ..|-.-...=.++.+++.
T Consensus 364 ~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~ 443 (835)
T KOG2047|consen 364 AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEA 443 (835)
T ss_pred HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHH
Confidence 555566666665311 11234678888899999999999999998876222 234444455556777788
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1094 AIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1094 Al~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
|+++.++.. ..|.... +..+ ..+..-++ .+-.+..+|+-.++.--.+|-++....+|+++.+
T Consensus 444 Al~lm~~A~---~vP~~~~----~~~y-d~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 444 ALKLMRRAT---HVPTNPE----LEYY-DNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHhhh---cCCCchh----hhhh-cCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 887665544 3343321 1111 22111111 1122456777778888889999999999999876
Q ss_pred CCHhHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH---hcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1174 KNIVSWSAMV---AAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACS---HGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1174 ~d~~s~n~LI---~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~---~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
--+.|=..++ .-+-.|..++++.+.|++=+..=-.|+.. .|+..|.-+. ..-.++.|+.+|++.++ |..|.
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~ 583 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPE 583 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHH
Confidence 3222211111 22345677899999887654432234443 3444444332 33478999999999986 56554
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH--
Q 040435 1247 L--EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL-- 1320 (1991)
Q Consensus 1247 ~--~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl-- 1320 (1991)
- ..|-.-...=-+-|....|+.+++++....++. ...|+..|.-....=-+.....+|+++++.-|++-.--.-
T Consensus 584 ~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 584 HAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 2 223333333345688999999999987655543 3578888876555444667788999999998876543333
Q ss_pred HHHHHHhCCCchhHHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~~ 1340 (1991)
.+.+=.+.|..+.|..+...
T Consensus 664 FAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHh
Confidence 36777788988888887764
No 83
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.74 E-value=1.2e-05 Score=95.82 Aligned_cols=287 Identities=11% Similarity=0.034 Sum_probs=196.3
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKL 1066 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~l 1066 (1991)
.|++.+|..+..+-.+.+-.|- ..|.....+....|+.+.+-+....+.+.--.++..++-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4778888888777665554432 345555666677788888888887777765566777777888888889999999888
Q ss_pred HHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc
Q 040435 1067 FNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAE 1143 (1991)
Q Consensus 1067 f~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~ 1143 (1991)
.+++.+ ........+..+|.+.|++.+++.++.+|.+.|+--|...- ++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l----------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL----------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH-----------
Confidence 777654 66778888999999999999999999999998865554321 00
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|. ...+-.
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~ 303 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHh
Confidence 111223333333333333333445555542 3455566677777778888888888888777776665 222335
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...++.+.-.+..+.-.+.++-.| ..+.+|..+|.|.+.+.+|.+.|+...+ ..|+...|.-+..++...|+.+.|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHH
Confidence 5667777766666666666555555 5677777777778888888888776654 467777787777788888888777
Q ss_pred HHHHHHHHh
Q 040435 1301 AGATSRILE 1309 (1991)
Q Consensus 1301 ~~~~e~lle 1309 (1991)
..+.++.+-
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 777777664
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=0.0001 Score=91.29 Aligned_cols=481 Identities=14% Similarity=0.084 Sum_probs=290.0
Q ss_pred hcCCchHHHHHHhhcCC-CCh-HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCIC-RDS-VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVH 830 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~-~d~-~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~ 830 (1991)
..|++++|...++.... |+. ..|-.+...-...|+.--|.+.| +..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHH
Confidence 46788899888877643 444 46777766666666655554444 3445666666666
Q ss_pred HHHH-------HhCC-CCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC
Q 040435 831 GYII-------RSGL-WAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGF 902 (1991)
Q Consensus 831 ~~~~-------k~G~-~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~ 902 (1991)
+... +.|- ..+.+-..+++.+.. ..+..|..+|-+-. ++ ...|..|....++++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~-kkfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~~---- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILE-KKFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEAK---- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHH-hhhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHhc----
Confidence 5432 2222 223333344444433 25667777775421 11 23456666667788887765432
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccC--CCCCHhHHHHH
Q 040435 903 KNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEM--PQKNKVSWNSA 980 (1991)
Q Consensus 903 gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m--~~~dv~s~n~L 980 (1991)
|...-...-.+.++++...|+-+.|-++-. +..-.-+-|..|.|.|....|.+.-..- .-.|......+
T Consensus 584 ~~p~~eklk~sy~q~l~dt~qd~ka~elk~---------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 584 GHPALEKLKRSYLQALMDTGQDEKAAELKE---------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred CChHHHHHHHHHHHHHHhcCchhhhhhhcc---------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 221112233445666666666655544311 1111235678899999988887664321 22466666677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhh-hhhHHHHHHhcCC
Q 040435 981 LSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELV-LNSLIDGYSKCHL 1059 (1991)
Q Consensus 981 I~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v-~naLI~~y~k~G~ 1059 (1991)
..++.+...+++|-.+|+++.. +...+..+.+-..+.+|.++-..+. +..++. -..--.-+...|+
T Consensus 655 a~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q 721 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQ 721 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHh
Confidence 7777777788888888887743 2233444433333444444433221 111111 0111223345567
Q ss_pred HHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh
Q 040435 1060 VELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR 1139 (1991)
Q Consensus 1060 l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~ 1139 (1991)
++.|..-|-+.. ..-.-|.+-.....+.+|+.+++.++.... -.--|..+..-|+..|+++.|++++-..
T Consensus 722 ~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--- 791 (1636)
T KOG3616|consen 722 LDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--- 791 (1636)
T ss_pred HHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---
Confidence 777776664431 111234455667888999999988876532 2334667778889999999988887542
Q ss_pred ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1140 CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRK--NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1140 g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
..++--|+||.+.|++++|.++-.+...| .++.|-+-..-+-.+|++.+|.++|-... .|+. .
T Consensus 792 ------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----a 856 (1636)
T KOG3616|consen 792 ------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----A 856 (1636)
T ss_pred ------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----H
Confidence 23456789999999999999998887665 45677777777888999999998886543 4554 3
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
|..|-+.|..+..+++.++- .|+ ..+.-.+..-|...|++.+|.+-|-+.. -|.+-.+.|+..+
T Consensus 857 iqmydk~~~~ddmirlv~k~------h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEKH------HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASE 922 (1636)
T ss_pred HHHHHhhCcchHHHHHHHHh------ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhh
Confidence 56778888888888776643 222 3455556677888899999988877664 3666777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
-++.|-++++ .....+..-++...++-+-.|
T Consensus 923 lw~dayriak---tegg~n~~k~v~flwaksigg 953 (1636)
T KOG3616|consen 923 LWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG 953 (1636)
T ss_pred hHHHHHHHHh---ccccccHHHHHHHHHHHhhCc
Confidence 7777665543 334445444554444433333
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.8e-05 Score=94.59 Aligned_cols=193 Identities=13% Similarity=0.063 Sum_probs=128.0
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
+....+|-++.-.|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+..+-
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence 3445556666666666677778888777665422 357777777788788888887777665432 111222233444
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCCCHHHHHHHHHH
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKATASAWGALLSA 1290 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~pd~~~~~~Ll~a 1290 (1991)
--|.+.++.+.|.++|.+.. ++-| |+..++-+.-+.-..+.+.+|..+|+..... ..--..+|+.|+.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 45677778888888877653 4666 4555555555556667777777777665421 00123467777778
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|++.+..++|+..+++++.+.|.++.+|..++-+|...|+.+.|..-.
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 888888888888888888888888888888888888888888776543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00013 Score=90.39 Aligned_cols=448 Identities=14% Similarity=0.144 Sum_probs=253.2
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHH--h
Q 040435 880 GGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNS--LIDMYA--K 955 (1991)
Q Consensus 880 ~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~na--LI~~y~--k 955 (1991)
.-+..+|++++|+....++... ..-|...+..-+-+..+.+.++.|..+.. ..+. ..+++. +=.+|| +
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 3445566777777777777652 32234445555556666666666663322 2221 011111 244555 7
Q ss_pred cCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 956 CKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 956 ~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
.+..++|...++...+-|..+...=...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-+.. +.- .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~~-~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QVQ-L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hHH-H
Confidence 7889999998886655555565556677888899999999999997655432 222222333222111 110 1
Q ss_pred HHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcC--------CCch-----h-----hhhHHHHhhhhcCChHH
Q 040435 1035 ILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVK--------KPDV-----V-----LWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1035 ~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~--------~~d~-----~-----syn~LI~~y~~~g~~ee 1093 (1991)
+......|+ ...|| ..-.+...|++..|+++++... +-|. . .---|.-.+...|+.++
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222221 12333 2345667899999999988762 1111 0 11124445667899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH---HHHHhhccChHHH--HHHHH-----------HHHHhccccchhHHHHHHHHHHh
Q 040435 1094 AIAVFQEMNQAQEKPNAITIINL---LEACSVATELSSS--KWAHG-----------IAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1094 Al~lf~~M~~~Gv~Pd~~T~~~l---L~a~a~~g~le~a--~~i~~-----------~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
|..+|....+.. .+|....... |.+...-.++-.+ ....+ .+....-......-++++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988764 3444222111 1222221111110 00000 0011111112333456677765
Q ss_pred cCCHHHHHHHHHhccCCC-HhHHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 040435 1158 CGAIEASRKAFDQISRKN-IVSWSAMVAAYG--MNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLS 1232 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~~d-~~s~n~LI~ay~--~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~ 1232 (1991)
+..+.+.++-......- ...+.+++.... +......|.+++...-+. .|+. +.....+.-....|+++.|.+
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 44566777666665422 334444443332 223577788888776653 3444 344444555678999999999
Q ss_pred HHH--------HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCC----CHHHHHHHHHHHHHcCCh
Q 040435 1233 FFN--------SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKA----TASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1233 i~~--------~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~p----d~~~~~~Ll~a~~~~g~~ 1297 (1991)
++. .+.+ +.-.+.+-..++.++.+.+.-+.|..++.+.... ..+ -..+|.-+..--.++|+.
T Consensus 398 il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 398 ILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 998 4432 3334556777889999988877777666655321 111 123444444445578999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEc
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVD 1358 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~ 1358 (1991)
++|...++++++.+|++....+-+..+|+...- +.|..+- +.+.|.++-..+.|+
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~-eka~~l~-----k~L~p~~~l~~vdVd 529 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLDP-EKAESLS-----KKLPPLKGLKAVDVD 529 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCH-HHHHHHh-----hcCCCcccchhcCch
Confidence 999999999999999999999988888887654 3333332 234555555555554
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=0.00019 Score=91.54 Aligned_cols=304 Identities=14% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHH
Q 040435 990 YSEALSLLYSMGKGV-NEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 990 ~~eAl~lf~~M~~~G-i~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
..++++.+++..+.+ -.|+...|.++- ++..++++.|.+...+.++.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 345666666664432 445544444443 33455677777777777777666667777777777777777777777766
Q ss_pred hcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcc--
Q 040435 1069 DVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQ--EKPNAITIINLLEACSVATELSSSKWAHGIAIRRCL-- 1141 (1991)
Q Consensus 1069 ~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~G--v~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~-- 1141 (1991)
...+ .|.+....-|..=..-++.++|+.....|..-- ..+=..+.. .|... + .+.|+
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~---~-----lk~~l~l 601 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLL---R-----LKAGLHL 601 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhh---h-----hhccccc
Confidence 5432 111111111122223456666666655554310 000000000 00000 0 01111
Q ss_pred -----ccchhHHHHHHHHHH---hcCCHHHHHHHHHhccCCC------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1142 -----AEEVAVGTAVVDMYA---KCGAIEASRKAFDQISRKN------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1142 -----~~d~~v~naLI~~y~---k~G~~e~A~~lf~~m~~~d------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
.....++..+..... +.-..+..+..+.....|+ ...|......+.+.+..++|...+.+....-
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~- 680 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID- 680 (799)
T ss_pred CcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-
Confidence 011112221111111 1111111111122222232 2345555566667777777776666655421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHCccCCCCCHHHH
Q 040435 1208 QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAID--LINQMPDNLKATASAW 1284 (1991)
Q Consensus 1208 ~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~--l~~~m~~~~~pd~~~~ 1284 (1991)
.-....|......+...|..++|.+.|..... +.|+ +....++..+|.+.|+-.-|.. ++..+.+..+.+...|
T Consensus 681 ~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 22223333333445566777777777766543 6664 5666777777777776555555 7777766555567777
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..|...+.+.|+.+.|...|.-++++++.+|
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 7777777777777777777777777776665
No 88
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.3e-05 Score=92.77 Aligned_cols=267 Identities=11% Similarity=0.004 Sum_probs=191.4
Q ss_pred HHhcCCHHHHHHHHHhcCCC---chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHH
Q 040435 1054 YSKCHLVELAWKLFNDVKKP---DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSK 1130 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~~---d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~ 1130 (1991)
+-..+++.+..++++.+.+. ....+-.=|..+...|+..+-..+=.+|.+. ..-...+|-+|---|...|...+|+
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence 33455556666666655542 2233444456667777777766666677664 2334567777777777889999999
Q ss_pred HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1131 WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1131 ~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
+.+.......-. =...|-++...|+-.|.-|.|...+....+ +. ...+--+..-|.+.+..+.|.+.|.+... +
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i 409 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I 409 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence 999876544311 134566778889999999999988876554 11 11122233457888999999999998875 6
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH
Q 040435 1208 QP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH-GVEP----ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA 1281 (1991)
Q Consensus 1208 ~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~-gi~P----~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~ 1281 (1991)
.| |+...+-+--..-+.+.+.+|..+|+..+..- .+.+ ...+++.|..+|-|.+++++|+..+++.....+-+.
T Consensus 410 ~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 410 APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 66 45555555444557889999999999876320 0111 345688899999999999999999999877556689
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
.++.++.-.+...||++.|...+.+++.+.|++...-.+|+.+
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999998777666643
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.62 E-value=6.3e-06 Score=104.72 Aligned_cols=231 Identities=13% Similarity=0.104 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHh-----cc-ccc-hhHHHHHHHHHHhcCCHHHHHHHHHhccC----------
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRR-----CL-AEE-VAVGTAVVDMYAKCGAIEASRKAFDQISR---------- 1173 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~-----g~-~~d-~~v~naLI~~y~k~G~~e~A~~lf~~m~~---------- 1173 (1991)
.|+..+-..|...|+++.|.+++..+++. |. .+. ....+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777788888888888888777654 21 111 12334566788999999999999998763
Q ss_pred C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--C
Q 040435 1174 K-NIVSWSAMVAAYGMNGLAHEALALVAEMKL-----GGLQ-PNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHG--V 1243 (1991)
Q Consensus 1174 ~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~-----~Gi~-Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g--i 1243 (1991)
| -..+++.|..+|.+.|++++|..++++..+ .|.. |... -++.+...|.+.+.+++|..+++...+.+- .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 235788888999999999998888877643 2222 2222 356677788999999999999988766544 2
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh--
Q 040435 1244 EPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKA-TASAWGALLSACRSYGNTELGAGATSRILE-- 1309 (1991)
Q Consensus 1244 ~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-- 1309 (1991)
.++ ..+|+.|..+|...|+++||+++++++..+ ..+ .....+.|..+|...++.+.|.+.|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 468999999999999999999999987542 112 245778889999999999999988888755
Q ss_pred --cCCCC---chHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1310 --LEAQN---SAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1310 --l~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
..|+. ..+|-.|+.+|...|++++|.++....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 45555 456788899999999999999977643
No 90
>PRK12370 invasion protein regulator; Provisional
Probab=98.62 E-value=4.8e-06 Score=110.39 Aligned_cols=208 Identities=13% Similarity=-0.025 Sum_probs=152.6
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
+.+.|...+..+++.. +.+...+..+...+...|++++|...|++..+ | +...|..+...|...|++++|+..+++
T Consensus 319 ~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566666666666654 33556667777788889999999999998764 4 456788888999999999999999999
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC
Q 040435 1202 MKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1202 M~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p 1279 (1991)
..+. .|+.. .+..++.++...|++++|.+.++++.+. ..|+ ...+..+..+|...|++++|...++++....+.
T Consensus 398 Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 398 CLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9874 45432 3334444566789999999999988653 2353 556777888999999999999999987654333
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+...++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+..+++
T Consensus 474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 531 (553)
T PRK12370 474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNK 531 (553)
T ss_pred hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHH
Confidence 4455666666667666 478887888777544444444558889999999887777744
No 91
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.62 E-value=2.1e-05 Score=93.62 Aligned_cols=276 Identities=11% Similarity=0.028 Sum_probs=155.0
Q ss_pred cCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1057 CHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
.|++..|++...+-.+ ..+..|-.-..+--+.|+.+.|-.++.+..+.--.++.....+.-.-....++.+.|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4666666666655433 2223333333444455666666666666554322333333334444455556666666555
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC-----------HhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN-----------IVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d-----------~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
..+.+.+ +-.+.+.......|.+.|++.....+...|.+.. ..+|+.++.-....+..+.-...+++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5555544 2234455566666666666666666666665421 124555544443333333333344443
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
... .+-+...-.+++.-+...|+.++|.++..+..+. +.+|+...+ -...+-++.+.=.+.+++-....+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 321 3334444455555556666666666666655542 444441111 1112334444444444433333455678
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
.+.+|..-|.+++.+.+|..+++.+++..|+ ...|..++.+|...|.-.+|..+|..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 8889999999999999999999988888885 45588889999999999888888764
No 92
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.61 E-value=7e-06 Score=95.03 Aligned_cols=199 Identities=13% Similarity=0.145 Sum_probs=136.8
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...+..+...|...|++++|.+.+++..+. .|+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 445666677777777777777777776543 122 22334445556
Q ss_pred HHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A 1230 (1991)
|...|++++|.+.|++..+ .+...+..+...|...|++++|++.|++.......| ....+..+...+...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 6667777777777766543 344567777777888888888888888877643222 234555566677788888888
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.+.+....+ ..| +...+..+...+.+.|++++|.+.++++....+.+...+..+...+...|+.+.|....+.+.+
T Consensus 155 ~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 888888765 344 3567778888888888888888888887654344566777777778888888888888777766
Q ss_pred cCC
Q 040435 1310 LEA 1312 (1991)
Q Consensus 1310 l~P 1312 (1991)
..|
T Consensus 232 ~~~ 234 (234)
T TIGR02521 232 LFP 234 (234)
T ss_pred hCc
Confidence 543
No 93
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=0.00015 Score=86.00 Aligned_cols=303 Identities=10% Similarity=-0.036 Sum_probs=204.9
Q ss_pred CCHHHHHHHHHHHhc--cCChhhHHHHHHHHH-HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHH--
Q 040435 1007 VDEITLVNILQICKC--FVHPMECKSVHCVIL-RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTM-- 1081 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~--~g~~~~a~~i~~~~~-~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~L-- 1081 (1991)
|...+....+.+++. .++-..+.+.+..+. ..-++-++....++.+.|...|+.++|...|++....|..+...|
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 333344444444433 233333333333333 334667888899999999999999999999998776444443332
Q ss_pred -HHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1082 -IAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1082 -I~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
...+.+.|+.++...+...+.... +-....+-.-+...-...+++.|..+-+..++..-. +...+-.-...+...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccc
Confidence 233467888888877777765431 111111111112222345566666665555554311 12222222244556799
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL-SACS-HGGLVEEGLSFFN 1235 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-~ac~-~~G~~e~A~~i~~ 1235 (1991)
.++|.-.|..... -+..+|.-|+.+|...|++.||.-+-++.... +.-+..+...+. ..|. ....-++|.++++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987654 37899999999999999999999887775542 334555555442 3333 2234588999998
Q ss_pred HhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1236 SMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1236 ~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+-++ +.|+ ...-..+..++.+.|+.+++..++++... ..||....+.|....+..+.+.+|...|..++.++|++
T Consensus 429 k~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 429 KSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7754 7887 45677788899999999999999999876 47899999999999999999999999999999999987
Q ss_pred ch
Q 040435 1315 SA 1316 (1991)
Q Consensus 1315 ~~ 1316 (1991)
..
T Consensus 505 ~~ 506 (564)
T KOG1174|consen 505 KR 506 (564)
T ss_pred hH
Confidence 54
No 94
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.4e-05 Score=96.35 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=139.4
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.+.-+|+.-.|..-|+...+ | +...|--+...|++..+.++-...|++....+ +-|..+|..-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 34557899999999998764 3 33348888889999999999999999998754 22445555555555566789999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..=|++.+. +.| +...|..+.-++.|.+++++++..|++...+++.-+.+|+-....+..+++++.|++-|+++++
T Consensus 414 ~aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 414 IADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999998865 788 4678888888999999999999999999998888899999999999999999999999999999
Q ss_pred cCCC------CchHHHHHHHHHHh
Q 040435 1310 LEAQ------NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1310 l~P~------~~~~yvlL~~lya~ 1327 (1991)
++|. ++..++.-+.+...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred hccccccccccchhhhhhhHhhhc
Confidence 9999 77777766555444
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.55 E-value=0.0028 Score=79.09 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCchHHHHHHh--hcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 040435 746 ALMDFYMKWRFPDSAVAVFD--DCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAY 823 (1991)
Q Consensus 746 ~Li~~y~k~G~~~~A~~lfd--~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~ 823 (1991)
+-|+.|.|.|.+-.|.+... +....|......+..++.+..-++.|=++|+++.. +...+..+.+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 45778888888877766542 22234555555566666777777777777777643 22344444444445
Q ss_pred HHHHHHHHHHHHhCCCCchHHHH-HHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 040435 824 YEGLQVHGYIIRSGLWAVHSVQN-SVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG 901 (1991)
Q Consensus 824 ~~a~~l~~~~~k~G~~~d~~v~n-aLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~ 901 (1991)
..|.++-... ++..++..- +.-.-+.. |.++.|..-|-+.. ..--.|.+..+...+.+|+.+++.++.+
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 5555443322 111111110 00011111 45555555443321 1112234455666777777777766543
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC--CHhHHHH
Q 040435 902 FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK--NKVSWNS 979 (1991)
Q Consensus 902 ~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~--dv~s~n~ 979 (1991)
+.-..-|..+..-|+..|+++.|+++|-.. ..++--|.||.+.|++++|.++-++...| .+++|-+
T Consensus 762 ---k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 762 ---KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred ---ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 222234566666777777777777766432 13455677777777777777777666554 3445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 040435 980 ALSGLVVNEKYSEALSLLYSM 1000 (1991)
Q Consensus 980 LI~a~~~~g~~~eAl~lf~~M 1000 (1991)
-..-+-+.|++.+|.++|-..
T Consensus 830 kaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEc
Confidence 555566667777777666443
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.55 E-value=2.7e-05 Score=89.92 Aligned_cols=317 Identities=11% Similarity=0.069 Sum_probs=169.5
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhc-CCC--chhhhhhHHHHHHhcCCHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRA-FES--NELVLNSLIDGYSKCHLVELA 1063 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g-~~~--d~~v~naLI~~y~k~G~l~~A 1063 (1991)
+.+.++|.++|-+|.+.. .-+..+-.++=+-+.+.|..+.|..+|..+.++. +.- -....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 366777777777776521 1111222334445556677777777777666542 111 122334566667788888888
Q ss_pred HHHHHhcCCCc---hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhc
Q 040435 1064 WKLFNDVKKPD---VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRC 1140 (1991)
Q Consensus 1064 ~~lf~~m~~~d---~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g 1140 (1991)
+.+|..+.+.+ ..+--.|+..|-...++++|+++-+++.+.|-++..+-. -.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---Aq---------------------- 181 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---AQ---------------------- 181 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---HH----------------------
Confidence 88888776522 234555777788888888888887777765544332211 11
Q ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1141 LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1141 ~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
.|.-|...+.-..+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+++..--..+...|
T Consensus 182 ------fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 182 ------FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ------HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 11222233333456666666666655422 222223345566677777777777777765433333455666
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..+|.+.|+.+++...+.++.+ ..+....-..|.+.-....-.+.|...+.+-.. -+|+...+..|+..-..
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-r~Pt~~gf~rl~~~~l~---- 327 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLR-RKPTMRGFHRLMDYHLA---- 327 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh-hCCcHHHHHHHHHhhhc----
Confidence 6677777777777777776654 233333333333333333333344433333222 13443333333322111
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCC
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKA 1370 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~ 1370 (1991)
=++.|+|.+...+.+.|....++..|-.---.-+-.+|+|.-.-++
T Consensus 328 ---------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 328 ---------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ---------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCC
Confidence 1223556666666666666666555543333334467777755443
No 97
>PRK12370 invasion protein regulator; Provisional
Probab=98.55 E-value=5.5e-06 Score=109.82 Aligned_cols=178 Identities=14% Similarity=0.034 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
.+++++|...+++..+ .+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|.+.
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3568899999998775 36778888888999999999999999999985 454 55677788889999999999999
Q ss_pred HHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1234 FNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPDNLKA-TASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
+++.++ +.|+. ..+..+..++...|++++|...++++....+| ++..+..+..++...|+.++|...++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999876 67753 33344455677799999999999988654334 45567777888889999999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCchhHHH-HHHHHH
Q 040435 1312 AQNSAGYLLASSMYAAGGLWVESSG-TRLLAK 1342 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~G~~~ea~~-vr~~m~ 1342 (1991)
|.+......|+..|...|. .+.. ++...+
T Consensus 472 ~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNSE--RALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence 9888888888888888884 5555 444333
No 98
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=0.0034 Score=81.39 Aligned_cols=139 Identities=16% Similarity=0.155 Sum_probs=110.6
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMV 1254 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li 1254 (1991)
....|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++... ++..-+|.+ -+.||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma-Rkk~~E~~i--d~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA-RKKVREPYI--DSELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH-HHhhcCccc--hHHHH
Confidence 3457999999999999999999887542 36778999999999999999999999754 444555654 45789
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea 1334 (1991)
-+|++.+++.|-++++. -|+..-......-|...|.++.|.-+|.. .+.|..|+..+...|.+..|
T Consensus 1174 ~AyAkt~rl~elE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHHHhchHHHHHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 46777788889999999999988887754 35567777777777777765
Q ss_pred HH
Q 040435 1335 SG 1336 (1991)
Q Consensus 1335 ~~ 1336 (1991)
..
T Consensus 1240 VD 1241 (1666)
T KOG0985|consen 1240 VD 1241 (1666)
T ss_pred HH
Confidence 53
No 99
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.54 E-value=0.0085 Score=75.71 Aligned_cols=586 Identities=11% Similarity=0.046 Sum_probs=256.2
Q ss_pred chHHHHHHHHhccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHh
Q 040435 708 SVYPLVVKACSNLSYIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLD 784 (1991)
Q Consensus 708 ~~~~~lL~ac~~~~~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~ 784 (1991)
..|..+++.+-......|......+++ ++.....+.....-.+...|+-++|......-.. ++.+.|..+--.+-.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence 445556666554445556556666665 4444444443333345567888888777765443 355778877766667
Q ss_pred CCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHH
Q 040435 785 HGTLGEGLWWFYKARVAGFEPNN-SILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKL 863 (1991)
Q Consensus 785 ~g~~~~Al~lf~~M~~~gi~Pd~-~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~v 863 (1991)
..++++|+..|+..... .||. ..+.-+--.-+..|+++.....-....+.....-..-....++....|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877653 3443 33332222223444444443333333332211111111112222222455555544
Q ss_pred HHhcC-----CCCHHHHHHH------HHHHHHcCChHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHH
Q 040435 864 FDEMC-----ERDVISWSVM------IGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMVH 931 (1991)
Q Consensus 864 f~~m~-----~~d~~syn~L------I~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l~ 931 (1991)
.++.. .++...+.-. ......+|..++|++-+..-... ..|... -.+-.....+.+++++|..++
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 44331 1222222211 12233445555555544443221 112111 112222334455555555555
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHH-HHhccCCC-------CCHhHHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 040435 932 GLVIYRGLGCDLFVG-NSLIDMYAKCKDTDSAF-KVFSEMPQ-------KNKVSWNSALSGLVVNEKY-SEALSLLYSMG 1001 (1991)
Q Consensus 932 ~~m~k~g~~pd~~v~-naLI~~y~k~G~~e~A~-~lf~~m~~-------~dv~s~n~LI~a~~~~g~~-~eAl~lf~~M~ 1001 (1991)
..++.+. ||..-| -.+..++++--+..++. .+|....+ |-....+. .....+ +..-.++..+.
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv-----l~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV-----LNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH-----hCcchhHHHHHHHHHHHh
Confidence 5555543 333322 23333333222222222 33333321 00001110 111122 22233444555
Q ss_pred cCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH----Hhc----------CCCchhhhh--hHHHHHHhcCCHHHHHH
Q 040435 1002 KGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL----RRA----------FESNELVLN--SLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 1002 ~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~----~~g----------~~~d~~v~n--aLI~~y~k~G~l~~A~~ 1065 (1991)
+.|+.+--..+.++.. .....+-.+++.-.+. ..| -+|....|+ -|+..|-+.|+++.|..
T Consensus 316 ~Kg~p~vf~dl~SLyk---~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPSVFKDLRSLYK---DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCchhhhhHHHHh---chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5555443222222221 1111110011110000 000 023333333 35556667777777777
Q ss_pred HHHhcCC--Cchh-hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccc
Q 040435 1066 LFNDVKK--PDVV-LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLA 1142 (1991)
Q Consensus 1066 lf~~m~~--~d~~-syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~ 1142 (1991)
..+.... |+.+ .|-+=...+..+|..++|...+.+.++.. .||...=.--..-..+....++|..+.....+.|.
T Consensus 393 yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~- 470 (700)
T KOG1156|consen 393 YIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF- 470 (700)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc-
Confidence 7776654 3322 23333355666777777777777666532 22222111222223355666677776666666654
Q ss_pred cchhHHHHH------------HHHHHhcCCHHHHHHHHHhccC------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1143 EEVAVGTAV------------VDMYAKCGAIEASRKAFDQISR------KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1143 ~d~~v~naL------------I~~y~k~G~~e~A~~lf~~m~~------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
+ ..+.| ..+|.+.|++..|++-|..+.+ .|..-|.+ -|.+.|-.
T Consensus 471 -~--~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfht---yc~rk~tl------------ 532 (700)
T KOG1156|consen 471 -G--AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHT---YCMRKGTL------------ 532 (700)
T ss_pred -c--hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHH---HHHhcCcH------------
Confidence 1 11111 2345555666666655555442 01111100 01222222
Q ss_pred CCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHhHHhcCCC-C---CHHHHH-HHHHHHHHcC-CHHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHGG-------LVEEGLSFFNSMVQDHGVE-P---ALEHYS-CMVDMLARAG-ELDIAIDLIN 1271 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~G-------~~e~A~~i~~~M~~~~gi~-P---~~~~y~-~Li~~l~r~G-~~eeA~~l~~ 1271 (1991)
.+|.-++.-+-... -...|.+++-.|.+..... + +.+..+ -......++. .-..|.+.-+
T Consensus 533 -------rsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~ 605 (700)
T KOG1156|consen 533 -------RSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAK 605 (700)
T ss_pred -------HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332221111 1234555555554321000 1 111111 1112221111 1111221111
Q ss_pred HC----------ccC--CCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1272 QM----------PDN--LKATASAWGALLSACRSYG-NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1272 ~m----------~~~--~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
.+ ... ..+|... +......-. =.++|...+..+....+++..+|++-..+|...|++.-+...-
T Consensus 606 ~~~~~~~~~~~s~~~~~~~~d~~~---~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~~~~~ 682 (700)
T KOG1156|consen 606 KKKDKKKKEAKSQSGKPVDIDEDP---FGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLALACL 682 (700)
T ss_pred HHHHHHHhhhccccCCCCCCCCcc---hhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 11 111 2234332 222333333 3577999888888999999999999999999999988877643
Q ss_pred H
Q 040435 1339 L 1339 (1991)
Q Consensus 1339 ~ 1339 (1991)
.
T Consensus 683 ~ 683 (700)
T KOG1156|consen 683 N 683 (700)
T ss_pred H
Confidence 3
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=0.011 Score=76.76 Aligned_cols=519 Identities=15% Similarity=0.109 Sum_probs=256.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCC--CChHHHHHH----HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 744 GNALMDFYMKWRFPDSAVAVFDDCIC--RDSVSWNIM----IQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC 817 (1991)
Q Consensus 744 ~n~Li~~y~k~G~~~~A~~lfd~m~~--~d~~s~n~L----I~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~ 817 (1991)
+....+.+.|.|-+..|++.+..+.. |.++.-+.+ +.+|...-.++++++.++.|...+++-|..+...+..-+
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45667778899999999988877653 333332221 235555667899999999999988888877666665555
Q ss_pred HhcCChHHHHHHHHHHHH-----------hCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC----------------
Q 040435 818 RCLGAYYEGLQVHGYIIR-----------SGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---------------- 869 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k-----------~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---------------- 869 (1991)
...--.+...++|+.... -++.-|..+.-..|.+-++ |.+.+..++-++-.-
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 544334444445444321 1345566677777888888 888888877654410
Q ss_pred ---------------CCHHHHH------HHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH-HHH------------HHH
Q 040435 870 ---------------RDVISWS------VMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ-SLV------------SVL 915 (1991)
Q Consensus 870 ---------------~d~~syn------~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~-T~~------------~lL 915 (1991)
+|.+.|- -.|..|++.-++.++-.+.-.++. +.-+.. .-+ -+.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHHHHhccCChHHHH
Confidence 1222221 134445444333333222222221 111111 111 222
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH----------HHHhccCCCCCH-----------
Q 040435 916 KACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSA----------FKVFSEMPQKNK----------- 974 (1991)
Q Consensus 916 ~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A----------~~lf~~m~~~dv----------- 974 (1991)
.-+-+.+++..-...++..+..|.. |..++|+|...|...++-.+- ..+=.-..++|.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGq 924 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQ 924 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccC
Confidence 3334445555555666777777754 888999999888765432221 111011111111
Q ss_pred ---h---------HHHHHHHHHHhcCCHH---HHH--------HHHHHHhcCCC--CCCHHHHHHHHHHHhccCChhhHH
Q 040435 975 ---V---------SWNSALSGLVVNEKYS---EAL--------SLLYSMGKGVN--EVDEITLVNILQICKCFVHPMECK 1029 (1991)
Q Consensus 975 ---~---------s~n~LI~a~~~~g~~~---eAl--------~lf~~M~~~Gi--~Pd~~T~~~lL~a~~~~g~~~~a~ 1029 (1991)
. .|-...+-+.+..+.+ +.+ .+.++..+.++ .-|....+....|+-..+-+.+-.
T Consensus 925 cD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLI 1004 (1666)
T KOG0985|consen 925 CDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELI 1004 (1666)
T ss_pred CcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHH
Confidence 0 1111222222222221 111 23333333332 224445556667777777777777
Q ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCC
Q 040435 1030 SVHCVILRRA--FESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEK 1107 (1991)
Q Consensus 1030 ~i~~~~~~~g--~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~ 1107 (1991)
++++.++-.. +.-+...-|.||-.-.|.. .....+..+++..-|..- +......++-++||..+|++.-
T Consensus 1005 ELLEKIvL~~S~Fse~~nLQnLLiLtAikad-~trVm~YI~rLdnyDa~~---ia~iai~~~LyEEAF~ifkkf~----- 1075 (1666)
T KOG0985|consen 1005 ELLEKIVLDNSVFSENRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAPD---IAEIAIENQLYEEAFAIFKKFD----- 1075 (1666)
T ss_pred HHHHHHhcCCcccccchhhhhhHHHHHhhcC-hHHHHHHHHHhccCCchh---HHHHHhhhhHHHHHHHHHHHhc-----
Confidence 7776665322 2233344555555444443 344555566655422211 2223445566777777776542
Q ss_pred CCHHHHHHHHHHHhhccChHHHHHHHHHHH---------Hh----c----------cccchhHHHHHHHHHHhcCCHHHH
Q 040435 1108 PNAITIINLLEACSVATELSSSKWAHGIAI---------RR----C----------LAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1108 Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~---------k~----g----------~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
.+......++. ..+.++.|.+.-.... +. | -..|+..|..+|+...+.|.+++-
T Consensus 1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred ccHHHHHHHHH---HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHH
Confidence 22223333332 1223333322211110 00 0 011333444444444445555544
Q ss_pred HHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC
Q 040435 1165 RKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG 1242 (1991)
Q Consensus 1165 ~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g 1242 (1991)
.+.+...++ +....=+.||-+|++.++..+..+++ .-||..-.-.+..-|...|.++.|.-+|..
T Consensus 1153 v~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------ 1219 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------ 1219 (1666)
T ss_pred HHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH------
Confidence 444433322 11222234455555555444433322 234444444555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1243 VEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1243 i~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+..|.-|...+...|.+..|.+--+++. +..+|...-.||...+.+..|
T Consensus 1220 ----vSN~a~La~TLV~LgeyQ~AVD~aRKAn-----s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1220 ----VSNFAKLASTLVYLGEYQGAVDAARKAN-----STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHhhhcc-----chhHHHHHHHHHhchhhhhHH
Confidence 3346677777777777777777666654 345666665555554444444
No 101
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.46 E-value=0.003 Score=80.99 Aligned_cols=394 Identities=12% Similarity=0.058 Sum_probs=241.9
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLV 1013 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~ 1013 (1991)
..+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-....-.|+..+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888899999999999999999999988653 355689999899999999899999988765543335444332
Q ss_pred HHH-HHHh-ccCChhhHHHHHHHHHHh--cC--CCchhhhhhHHHHHHhcC-----------CHHHHHHHHHhcCC----
Q 040435 1014 NIL-QICK-CFVHPMECKSVHCVILRR--AF--ESNELVLNSLIDGYSKCH-----------LVELAWKLFNDVKK---- 1072 (1991)
Q Consensus 1014 ~lL-~a~~-~~g~~~~a~~i~~~~~~~--g~--~~d~~v~naLI~~y~k~G-----------~l~~A~~lf~~m~~---- 1072 (1991)
.+. ..|. +.+..+++...-..++.. +. ......|-.+--+|...- ...++...+++..+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 222 2332 455566665555555542 11 112333444444443211 12344445555432
Q ss_pred -CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHH
Q 040435 1073 -PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTA 1150 (1991)
Q Consensus 1073 -~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~na 1150 (1991)
|++.-|-+| -|+..++.+.|++..++..+.+-.-+...+..+.-.++..+++..|..+.+..... |....... .
T Consensus 477 dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~ 552 (799)
T KOG4162|consen 477 DPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--G 552 (799)
T ss_pred CchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--h
Confidence 444444333 46667778888888888877655556666666655666667777777776665432 21000000 0
Q ss_pred HHHHHHhcCCHHHHH--------------------------HHHHhccC-----CCH-hHHHHHHHHHHHcCCHHHHHHH
Q 040435 1151 VVDMYAKCGAIEASR--------------------------KAFDQISR-----KNI-VSWSAMVAAYGMNGLAHEALAL 1198 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~--------------------------~lf~~m~~-----~d~-~s~n~LI~ay~~~G~~~eAl~l 1198 (1991)
-++.-.+-++.++|. +.+..+.- .|. .++.-+ .+... -+.+.+..-
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se 630 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSE 630 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccc
Confidence 011111122322222 22222210 111 122222 22222 111111100
Q ss_pred HHHHHHCCCC--CCHH------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 040435 1199 VAEMKLGGLQ--PNAV------TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDL 1269 (1991)
Q Consensus 1199 f~eM~~~Gi~--Pd~~------T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l 1269 (1991)
.. |...-+. |+.. .|......+...+..++|...+.+.. ++.| ....|......+...|.++||.+.
T Consensus 631 ~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 631 LK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred cc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00 2222222 2321 24445567788899999998877664 4666 456788788889999999999999
Q ss_pred HHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH--HHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1270 INQMPDNLKATASAWGALLSACRSYGNTELGAG--ATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1270 ~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~--~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
|.....-.+.++.+..+|...+...|+...|+. +...+++++|.++.+|..|+.+..+.|+.++|......
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 998876445567788999999999999999988 99999999999999999999999999999999987654
No 102
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=6.1e-05 Score=87.10 Aligned_cols=249 Identities=14% Similarity=0.165 Sum_probs=180.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhc-cccc--hhHHHHHHHHHHhcCCHHH
Q 040435 1088 CGRPREAIAVFQEMNQAQEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRC-LAEE--VAVGTAVVDMYAKCGAIEA 1163 (1991)
Q Consensus 1088 ~g~~eeAl~lf~~M~~~Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g-~~~d--~~v~naLI~~y~k~G~~e~ 1163 (1991)
+.+.++|.++|-+|.+. .|.. .+-.+|-+-+.+.|..+.|..+|..+.++. +..+ ....-.|..-|-+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 56788888888888763 3322 233456666788888899999988887652 2211 2233457778899999999
Q ss_pred HHHHHHhccCCC---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1164 SRKAFDQISRKN---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1164 A~~lf~~m~~~d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
|+.+|..+.+.+ ......|+..|-...++++|++.-+++.+.|-.+..+ -|.-|........+++.|+..+.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999988733 3466678899999999999999999998876555443 244555566677889999999998
Q ss_pred hHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1237 MVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1237 M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..+ ..|+ +..--.+.+.....|+++.|.+.++...+. .|+ ..+...|..+|...|+.+.+...+.++.+..+.
T Consensus 206 Alq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 206 ALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 866 4554 455566788999999999999999998763 232 457888899999999999999999999998887
Q ss_pred CchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1314 NSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1314 ~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
.....++--.+-...|.-+-...+.+.++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 65544333334444455333333444443
No 103
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.42 E-value=2.3e-05 Score=95.56 Aligned_cols=184 Identities=16% Similarity=0.087 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACS 1222 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~ 1222 (1991)
.+..+...|.+.|+.++|...|+...+ .+...|+.+...|...|++++|++.|++..+ +.|+ ..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 344445555566666666666655543 2345566666666666666666666666554 2343 334455555555
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..|++++|.+.|+...+ ..|+-.........+...++.++|.+.+++......|+. |.. .......|+...+ .
T Consensus 144 ~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~--~~~-~~~~~~lg~~~~~-~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQ--WGW-NIVEFYLGKISEE-T 216 (296)
T ss_pred HCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccc--cHH-HHHHHHccCCCHH-H
Confidence 56666666666665543 344322111112223344556666666644332222221 221 1111223333322 1
Q ss_pred HHHHHH-------hcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1303 ATSRIL-------ELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1303 ~~e~ll-------el~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+++.+. ++.|+.+.+|..|+.+|...|++++|....+
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222 3344445556666666666666666665544
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00031 Score=81.55 Aligned_cols=408 Identities=13% Similarity=0.078 Sum_probs=199.5
Q ss_pred CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l 930 (1991)
|++++|..++..+.+ ++...|-.|..++.-.|.+.+|..+-... |+... -..+....-+.++-++-..+
T Consensus 71 gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-------~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 71 GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA-------PKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC-------CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 566666666554422 34444555555555556666665543332 22222 22233333445555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC--CCHhHHHH-HHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--KNKVSWNS-ALSGLVVNEKYSEALSLLYSMGKGVNEV 1007 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~dv~s~n~-LI~a~~~~g~~~eAl~lf~~M~~~Gi~P 1007 (1991)
|+.+...- .-.-+|..+.--.-.+.+|++++.++.. |.-...|. |.-+|.+..-++-+.+++..-.+. -|
T Consensus 144 h~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p 216 (557)
T KOG3785|consen 144 HSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP 216 (557)
T ss_pred HHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence 55443221 1122333333333456778888877664 33344443 445666777777777766655432 24
Q ss_pred CHHHHHHHHHHHhccC--ChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhc-----CCHHHHHHHHHhcCCCchhhhhH
Q 040435 1008 DEITLVNILQICKCFV--HPMECKSVHCVILRRAFESNELVLNSLIDGYSKC-----HLVELAWKLFNDVKKPDVVLWST 1080 (1991)
Q Consensus 1008 d~~T~~~lL~a~~~~g--~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~-----G~l~~A~~lf~~m~~~d~~syn~ 1080 (1991)
|+ |+..=|.+|.... +-..+.+-...+.+.+-..-+ .+.-.++. ..-+.|.+++-.+.+.=..+--.
T Consensus 217 dS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 217 DS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred Cc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 32 3444444543321 111222222222222211101 11111221 22345555554433211112223
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hhccChHHHHHHHHHHHHhccccchhHHH-HHHHH
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEAC-----SVATELSSSKWAHGIAIRRCLAEEVAVGT-AVVDM 1154 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~-----a~~g~le~a~~i~~~~~k~g~~~d~~v~n-aLI~~ 1154 (1991)
|+--|.+.++..+|..+.+++.- ..|-....-.+..+- .+...+..|.+.+...-.++...|..... ++...
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 45558889999999988877632 334443333333321 12223445666666666666665554433 33334
Q ss_pred HHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS-ACSHGGLVEE 1229 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~-ac~~~G~~e~ 1229 (1991)
+.-..++++.+-.+..+.. .|...+| +..+++..|.+.+|.++|-+.....+ -|.++|.+++. .|.+.|..+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchH
Confidence 4444556666666655543 3444444 56667777777777777765543322 24555655554 3456677777
Q ss_pred HHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEPA-L-EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P~-~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
|+.++-.+- .|. . .....+..-+-+++.+--|-+.|+.+.. ..|++.-|.---+||.
T Consensus 447 AW~~~lk~~-----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~-lDP~pEnWeGKRGACa 505 (557)
T KOG3785|consen 447 AWDMMLKTN-----TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI-LDPTPENWEGKRGACA 505 (557)
T ss_pred HHHHHHhcC-----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc-cCCCccccCCccchHH
Confidence 776665441 121 1 1223334555666666666666665543 4566666655444443
No 105
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.42 E-value=3.7e-05 Score=97.90 Aligned_cols=234 Identities=14% Similarity=0.110 Sum_probs=159.1
Q ss_pred hhhhhHHHHHHhcCCHHHHHHHHHhcCC----------Cchhh-hhHHHHhhhhcCChHHHHHHHHHHHHC---CCCCCH
Q 040435 1045 LVLNSLIDGYSKCHLVELAWKLFNDVKK----------PDVVL-WSTMIAGFTLCGRPREAIAVFQEMNQA---QEKPNA 1110 (1991)
Q Consensus 1045 ~v~naLI~~y~k~G~l~~A~~lf~~m~~----------~d~~s-yn~LI~~y~~~g~~eeAl~lf~~M~~~---Gv~Pd~ 1110 (1991)
.+...|..+|...|+++.|..+|+...+ +.+.+ -+.+...|...+++++|..+|.++..- ..-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455577778888888888777766432 22222 233555667777788888877776531 011111
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----------CCHh-HH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----------KNIV-SW 1179 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~d~~-s~ 1179 (1991)
+.-..+++.|-..|.+.|++++|...+++..+ +.+. -+
T Consensus 280 -------------------------------~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 280 -------------------------------PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred -------------------------------HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 11233455566677777887777776665432 2332 45
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc----C-CCCC-
Q 040435 1180 SAMVAAYGMNGLAHEALALVAEMKLG---GLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDH----G-VEPA- 1246 (1991)
Q Consensus 1180 n~LI~ay~~~G~~~eAl~lf~eM~~~---Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~----g-i~P~- 1246 (1991)
+.++..+...+++++|..+++...+. -..++. .+++.+-..+.+.|.+++|.++|++++... | ..+.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788889999999888876532 123333 368888999999999999999999887642 1 1222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccC------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDN------LKA-TASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~------~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..+++.|...|.+.++.++|.++|.+.... ..| ...+|..|...|...|++|.|+++.++++.
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 457788889999999999999998875431 222 346899999999999999999999998874
No 106
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0022 Score=79.98 Aligned_cols=206 Identities=14% Similarity=0.084 Sum_probs=111.4
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHHhh---C
Q 040435 781 GHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNS--VLSMYVD---A 855 (1991)
Q Consensus 781 a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~na--Li~~yak---g 855 (1991)
-+..+|++++|+....++...+ +-|...+..=+-+....+.+++|..+.+ +.+. ..+.+. +-.+|+. +
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666544 3344455555555666666666653322 2221 111122 3456664 7
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHH
Q 040435 856 DMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDG--QSLVSVLKACTNLRDLTMGRMVHGL 933 (1991)
Q Consensus 856 ~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~--~T~~~lL~a~~~~g~~~~a~~l~~~ 933 (1991)
..++|...++....-|..+--.=...+-+.|++++|+++|+.+.++ -.+|. ..-..++.+-.. .+.- .
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn--~~dd~d~~~r~nl~a~~a~-------l~~~-~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN--NSDDQDEERRANLLAVAAA-------LQVQ-L 163 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHh-------hhHH-H
Confidence 7888888888555445445444456677889999999999998764 22222 122222222111 1110 2
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHhccCC--------CCCH-----h----H-HHHHHHHHHhcCCHHH
Q 040435 934 VIYRGLGCD---LFVGNSLIDMYAKCKDTDSAFKVFSEMP--------QKNK-----V----S-WNSALSGLVVNEKYSE 992 (1991)
Q Consensus 934 m~k~g~~pd---~~v~naLI~~y~k~G~~e~A~~lf~~m~--------~~dv-----~----s-~n~LI~a~~~~g~~~e 992 (1991)
+......|+ ...|| ....+...|++.+|+++++... +-|. . + ---|.-.+...|+..+
T Consensus 164 ~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 222222232 11233 2345667889999988887761 1111 1 1 1123345556799999
Q ss_pred HHHHHHHHhcCC
Q 040435 993 ALSLLYSMGKGV 1004 (1991)
Q Consensus 993 Al~lf~~M~~~G 1004 (1991)
|..++....+..
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 999988887653
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=0.0061 Score=77.59 Aligned_cols=152 Identities=12% Similarity=0.052 Sum_probs=83.5
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 920 NLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYS 999 (1991)
Q Consensus 920 ~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~ 999 (1991)
..|+.+.|..++..... |-++++..|-.|+.++|-++-++- .|....-.+.+.|-..|++.+|..+|.+
T Consensus 924 S~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 924 SVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566666666554432 445566666667777777776543 3555556677777777888888888776
Q ss_pred HhcCCCCCCHHHHHHHHHHHhccCCh---------------hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH
Q 040435 1000 MGKGVNEVDEITLVNILQICKCFVHP---------------MECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAW 1064 (1991)
Q Consensus 1000 M~~~Gi~Pd~~T~~~lL~a~~~~g~~---------------~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~ 1064 (1991)
.+ +|.+.|+.|...+-- -.|...++ +.|. -..-.+..|.|.|.+.+|+
T Consensus 993 Aq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~-----~~~~AVmLYHkAGm~~kAL 1055 (1416)
T KOG3617|consen 993 AQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGG-----YAHKAVMLYHKAGMIGKAL 1055 (1416)
T ss_pred HH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcch-----hhhHHHHHHHhhcchHHHH
Confidence 63 456666655432221 11222222 1121 1223455788899988888
Q ss_pred HHHHhcCC--------------CchhhhhHHHHhhhhcCChHHHHHHHH
Q 040435 1065 KLFNDVKK--------------PDVVLWSTMIAGFTLCGRPREAIAVFQ 1099 (1991)
Q Consensus 1065 ~lf~~m~~--------------~d~~syn~LI~~y~~~g~~eeAl~lf~ 1099 (1991)
++--+-.+ .|....+--..-+..+.++++|..++-
T Consensus 1056 elAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1056 ELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 76433221 233333333344455556666665553
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.30 E-value=0.0092 Score=75.41 Aligned_cols=455 Identities=14% Similarity=0.085 Sum_probs=213.8
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCChHHHHHHH
Q 040435 819 CLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCE---RDVISWSVMIGGYVQSAEAFSGLRLF 895 (1991)
Q Consensus 819 ~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~~~eAl~lf 895 (1991)
..+.+..+..+.+.+++.-......+.-.-+..++-|+-++|......-.+ ++.+.|.++.-.+-...++++|+..|
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 445666666666666663222222233333444555888888877765543 46788988887777788999999999
Q ss_pred HHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCH
Q 040435 896 RQMVSGFKNEPDGQS-LVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNK 974 (1991)
Q Consensus 896 ~~M~~~~gv~Pd~~T-~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv 974 (1991)
+.... +.||.-. +--+--.-++.|++ .+-..+.+.|+. ......
T Consensus 99 ~nAl~---~~~dN~qilrDlslLQ~QmRd~---------------~~~~~tr~~LLq-----------------l~~~~r 143 (700)
T KOG1156|consen 99 RNALK---IEKDNLQILRDLSLLQIQMRDY---------------EGYLETRNQLLQ-----------------LRPSQR 143 (700)
T ss_pred HHHHh---cCCCcHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHH-----------------hhhhhH
Confidence 98876 4555322 11111000111111 111122222221 112345
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHH------HHhccCChhhHHHHHHHHHHhcCCCchhhh
Q 040435 975 VSWNSALSGLVVNEKYSEALSLLYSMGKGV-NEVDEITLVNILQ------ICKCFVHPMECKSVHCVILRRAFESNELVL 1047 (1991)
Q Consensus 975 ~s~n~LI~a~~~~g~~~eAl~lf~~M~~~G-i~Pd~~T~~~lL~------a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~ 1047 (1991)
..|..++.++.-.|+...|..++++..+.. -.|+...+.-... .....|.++.+.+....... .+......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHh
Confidence 678888888888999999999988886654 2455544432222 12233444444433322111 111111122
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhh-hcCChHHHH-HHHHHHHHCC---CCCCHHHHHHHHHHH
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFT-LCGRPREAI-AVFQEMNQAQ---EKPNAITIINLLEAC 1120 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~-~~g~~eeAl-~lf~~M~~~G---v~Pd~~T~~~lL~a~ 1120 (1991)
-.-.+.+.+.+++++|..++..+.. ||.+-|+.....+. +-.+.-+++ .+|....+.- -.|-.... ++++
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl-svl~-- 299 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPL-SVLN-- 299 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccH-HHhC--
Confidence 2334455566666666666666553 55555444433222 222222333 4444333210 11111111 1110
Q ss_pred hhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
...-.+.....+...++.|+++ ++..+...|-.-...+ +.+ .++..|...-.........+
T Consensus 300 -~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~----~le-----------~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 300 -GEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVA----FLE-----------KLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred -cchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhH----HHH-----------HHHHHHHhhcccccCCCccc
Confidence 0111111222233333333322 2233333222111110 111 11111111100000000000
Q ss_pred HHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1201 EMKLGGLQPNAV--TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1201 eM~~~Gi~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
.= .--+|... |+..+...+-+.|+++.|..+++..+. -.|+ ++.|..=..++..+|.+++|..++++..+-.
T Consensus 361 ~~--~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 361 DG--KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cc--ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 00 00134443 333445566677777777777776643 4565 4566666677777777777777777776543
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------chHHHHH--HHHHHhCCCchhHHH
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQN-------SAGYLLA--SSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-------~~~yvlL--~~lya~~G~~~ea~~ 1336 (1991)
.+|..+-+--..-..+..+.++|.+++.+.-.-+-+- --.++.+ +..|.++|+|.+|.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 4444333233333334566677776665544433211 1123333 667888888866655
No 109
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.30 E-value=0.00012 Score=89.41 Aligned_cols=191 Identities=11% Similarity=0.019 Sum_probs=129.7
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCC
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~ 1191 (1991)
.+-..+...|+.+.|...+..+++.. +.+...++.+...|...|++++|...|+...+ | +...|..+...+...|+
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33334555566666666555555543 23466788888899999999999999998865 4 46788888899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLIN 1271 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~ 1271 (1991)
+++|++.|++..+. .|+.......+..+...++.++|.+.+...... ..|+...+ .++.. ..|++.++ +.++
T Consensus 148 ~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~~--~lg~~~~~-~~~~ 219 (296)
T PRK11189 148 YELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVEF--YLGKISEE-TLME 219 (296)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHHH--HccCCCHH-HHHH
Confidence 99999999998874 465432222222344677899999999766442 34433222 23333 34555443 2333
Q ss_pred HCccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1272 QMPDN-------LKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1272 ~m~~~-------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+.+. .+....+|..|...+...|+.++|+..++++++++|.+
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33211 11234689999999999999999999999999999754
No 110
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.26 E-value=0.0064 Score=79.57 Aligned_cols=631 Identities=11% Similarity=0.011 Sum_probs=302.0
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCC----Cch
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYE----SFT 741 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~----~d~ 741 (1991)
|..+-..|.++..-|....+...|...|+...+.. +.+......+.+.++... ...+..+ .+..+-. .-.
T Consensus 488 d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I---~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 488 DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI---CLRAAQKAPAFACK 562 (1238)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH---HHHHhhhchHHHHH
Confidence 33344445555555555555666777777765533 445555555555555544 3344444 1111110 011
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC- 817 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~- 817 (1991)
.-|-.+.-.|.+.++..+|..-|+...+ .|...|-.+..+|.+.|++..|+.+|.+... +.|+ .+|.....+-
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ 639 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVM 639 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHH
Confidence 2222344456677777777777776543 4677888899999999999999999987655 3444 3444333332
Q ss_pred -HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHH--------HHhhCCHHHHHHHHHhcC-----------CCCHHHHHH
Q 040435 818 -RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLS--------MYVDADMECARKLFDEMC-----------ERDVISWSV 877 (1991)
Q Consensus 818 -~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~--------~yakg~~e~A~~vf~~m~-----------~~d~~syn~ 877 (1991)
+..|.+.++...++.++..-- .-....+.|.. .+.+|-...|...|+.-. ..+...|-.
T Consensus 640 ecd~GkYkeald~l~~ii~~~s-~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~ 718 (1238)
T KOG1127|consen 640 ECDNGKYKEALDALGLIIYAFS-LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIV 718 (1238)
T ss_pred HHHhhhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 355777777777776654310 00111111111 122222222222222211 112222322
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----HcCCCCCHHHHHHHHHH
Q 040435 878 MIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVI-----YRGLGCDLFVGNSLIDM 952 (1991)
Q Consensus 878 LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~-----k~g~~pd~~v~naLI~~ 952 (1991)
+ ..|..+|.+..- . .|+......+..-.-..+....-. ++.... ...+..+...|-.|..-
T Consensus 719 a----------sdac~~f~q~e~--~-~vn~h~l~il~~q~e~~~~l~~~d-~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 719 A----------SDACYIFSQEEP--S-IVNMHYLIILSKQLEKTGALKKND-LLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred H----------hHHHHHHHHhcc--c-chHHHHHHHHHHHHHhcccCcchh-HHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 2 233344444321 1 333333333333222222221000 000000 01111223333333322
Q ss_pred HHh----cC----ChHHHHHHhccCC---CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 040435 953 YAK----CK----DTDSAFKVFSEMP---QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC 1021 (1991)
Q Consensus 953 y~k----~G----~~e~A~~lf~~m~---~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~ 1021 (1991)
|.+ +| +...|...+.... ..+...||+|--. ...|++.-|...|-+-... .+-...+|..+-..|..
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEe
Confidence 222 22 2234555554432 2466777766444 4456666666665544332 11234455555555666
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcC-----C---CchhhhhHHHHhhhhcCChHH
Q 040435 1022 FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVK-----K---PDVVLWSTMIAGFTLCGRPRE 1093 (1991)
Q Consensus 1022 ~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~-----~---~d~~syn~LI~~y~~~g~~ee 1093 (1991)
..+++.|.+.+..+.... +.+...|-.....--..|+.-++..+|..-. + ++..-|-....-...+|+.++
T Consensus 863 n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~ 941 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEE 941 (1238)
T ss_pred cccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHH
Confidence 777777777776655433 2233333333333334566666666665421 1 444445444445556666555
Q ss_pred HHHHHHHHHH---------CCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHH----HHHHHHhcC
Q 040435 1094 AIAVFQEMNQ---------AQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTA----VVDMYAKCG 1159 (1991)
Q Consensus 1094 Al~lf~~M~~---------~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~na----LI~~y~k~G 1159 (1991)
-+..-++... .|..-+.+.|.......-+.+..+.+.......+.. ....+...||. +...++..|
T Consensus 942 ~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslg 1021 (1238)
T KOG1127|consen 942 SINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLG 1021 (1238)
T ss_pred HHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhc
Confidence 4433322211 123334455555554444555444444333332211 11223334442 334445567
Q ss_pred CHHHHHHHHHhccC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR-KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNA-VTTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
.++.|..-+..... -+..+-..=+.. ...|+++++++.|++...-- -.-|. +....++-+....+.-+.|...+-+
T Consensus 1022 efe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1022 EFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred chhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 77777666654432 121111111111 34578899999999987521 11222 2344444555667777778777666
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1237 MVQDHGVEPALEHYSCMVDMLAR---AGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1237 M~~~~gi~P~~~~y~~Li~~l~r---~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
.... -.|+....-+|--++.- +....-+.+-+...+.. +.-++.....+ .+...|+-....+..++..-..
T Consensus 1101 ~~~l--s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~--i~~~~~r~~~vk~~~qr~~h~~ 1176 (1238)
T KOG1127|consen 1101 VKSL--SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKEL--IYALQGRSVAVKKQIQRAVHSN 1176 (1238)
T ss_pred HHHh--CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHH--HHHHhhhhHHHHHHHHHHHhcC
Confidence 6543 23444443333332222 22222223333333221 11112222222 2567788888999999999999
Q ss_pred CCCchHHHHHHHHHHhC
Q 040435 1312 AQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~ 1328 (1991)
|.++..+.+|.+=|+..
T Consensus 1177 P~~~~~WslL~vrya~~ 1193 (1238)
T KOG1127|consen 1177 PGDPALWSLLSVRYAQR 1193 (1238)
T ss_pred CCChHHHHHHHHHHHHH
Confidence 99999999998766553
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.25 E-value=0.0028 Score=82.72 Aligned_cols=537 Identities=13% Similarity=0.041 Sum_probs=251.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHH--H
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLS--M 851 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~--~ 851 (1991)
.|..|-..|...-+...|...|+...+-+ .-|......+...+++..+++.|..+.-..-+.. ..-...+|-+-. .
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhcccc
Confidence 34444444444444444555555444321 1123334444455555555555554411111100 000111111111 1
Q ss_pred Hhh-CCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHccCChH
Q 040435 852 YVD-ADMECARKLFDEMC---ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKA--CTNLRDLT 925 (1991)
Q Consensus 852 yak-g~~e~A~~vf~~m~---~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a--~~~~g~~~ 925 (1991)
|-+ ++...|..-|+... ..|..+|..+..+|.+.|++..|++.|.+... +.|+. +|...-.+ -+..|.+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHH
Confidence 223 56677777776553 34778888888899999999999998887754 55653 23332222 23456777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChHHHHHHhccCCCCCHhHHHHHH-HHHHhcC----CHHHH
Q 040435 926 MGRMVHGLVIYRGLGCDLFVGNSLIDMYAK-------CKDTDSAFKVFSEMPQKNKVSWNSAL-SGLVVNE----KYSEA 993 (1991)
Q Consensus 926 ~a~~l~~~m~k~g~~pd~~v~naLI~~y~k-------~G~~e~A~~lf~~m~~~dv~s~n~LI-~a~~~~g----~~~eA 993 (1991)
++...++.++..- ..-....+.|...+.+ .|-...|...|+.- ...+...+ ...+... -...|
T Consensus 648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks----ie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS----IESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 7777666665431 1111122222222222 22222333333321 11111111 1100000 01233
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhH----HHHHHHHHHhcCCCchhhhhhHHHHHHh----cC----CHH
Q 040435 994 LSLLYSMGKGVNEVDEITLVNILQICKCFVHPMEC----KSVHCVILRRAFESNELVLNSLIDGYSK----CH----LVE 1061 (1991)
Q Consensus 994 l~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a----~~i~~~~~~~g~~~d~~v~naLI~~y~k----~G----~l~ 1061 (1991)
..+|....- . .|+......+..-.-..+....- ...-.......+..+...|..|...|.+ +| +..
T Consensus 723 c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~ 800 (1238)
T KOG1127|consen 723 CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDAC 800 (1238)
T ss_pred HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHH
Confidence 444444431 1 33333333333222222222110 0111111112222334444444444433 22 233
Q ss_pred HHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHH
Q 040435 1062 LAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIR 1138 (1991)
Q Consensus 1062 ~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k 1138 (1991)
.|...+....+ .+...||.|--. ..-|.+.-|...|-+-... .+....+|..+---|....+++.|.+.+.....
T Consensus 801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 45555555433 566777776544 4456666666666554432 122444555555556667777777777766554
Q ss_pred hccccchhHHHHHHHHHHhcCCHHHHHHHHHhc-----cC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH------
Q 040435 1139 RCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQI-----SR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKL------ 1204 (1991)
Q Consensus 1139 ~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m-----~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~------ 1204 (1991)
... .+..-+--..-.-...|+.-++..+|.-- .+ ++..-|-+-..-..++|+.++-+..-+.+-.
T Consensus 879 LdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 LDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred cCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 321 11111111111122346666666666541 11 4455555545555666665554433332211
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHCccCC
Q 040435 1205 ---GGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSC----MVDMLARAGELDIAIDLINQMPDNL 1277 (1991)
Q Consensus 1205 ---~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~----Li~~l~r~G~~eeA~~l~~~m~~~~ 1277 (1991)
.|.+-+...|........|.+.+..|.+...+.+.-...+-+...|+. ...+++..|.++.|..-+.... .
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~--~ 1035 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW--M 1035 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc--h
Confidence 133445566777777777777777777666655432222334444543 3344555677776666555443 2
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
..+..+-++-+.. .-.|+++.+...|++++.+.-++....++++.+....|
T Consensus 1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g 1086 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMG 1086 (1238)
T ss_pred hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHh
Confidence 2333344444433 33568888888888888876666665666665544443
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=0.0043 Score=78.89 Aligned_cols=427 Identities=14% Similarity=0.059 Sum_probs=236.7
Q ss_pred chHHHHHHHH--HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 040435 740 FTSIGNALMD--FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQAC 817 (1991)
Q Consensus 740 d~~~~n~Li~--~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~ 817 (1991)
|..+-.++++ .|.--|+++.|.+-...+.+ -+.|..|.+.|.+..+.+-|.-.+..|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~a---------------- 786 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNA---------------- 786 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhh----------------
Confidence 5566666664 46667888888777666553 456888888888888877777777666532
Q ss_pred HhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh--CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 040435 818 RCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD--ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLF 895 (1991)
Q Consensus 818 ~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak--g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf 895 (1991)
..|+ .+.+..+.|-.... -+..++- |.+++|..++.+-.+-| .|=.-|-..|.+++|+++-
T Consensus 787 ------RgaR-AlR~a~q~~~e~ea-----kvAvLAieLgMlEeA~~lYr~ckR~D-----LlNKlyQs~g~w~eA~eiA 849 (1416)
T KOG3617|consen 787 ------RGAR-ALRRAQQNGEEDEA-----KVAVLAIELGMLEEALILYRQCKRYD-----LLNKLYQSQGMWSEAFEIA 849 (1416)
T ss_pred ------hhHH-HHHHHHhCCcchhh-----HHHHHHHHHhhHHHHHHHHHHHHHHH-----HHHHHHHhcccHHHHHHHH
Confidence 1111 12222222211111 1112222 77888888887765443 4555667788888888876
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHh
Q 040435 896 RQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV 975 (1991)
Q Consensus 896 ~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~ 975 (1991)
+.--+- .+ ..||-.-..-+...++.+.|.+.++.. |.. --.+.. |+. .+.....+..+++.++...
T Consensus 850 E~~DRi-HL---r~Tyy~yA~~Lear~Di~~AleyyEK~---~~h-afev~r-mL~-----e~p~~~e~Yv~~~~d~~L~ 915 (1416)
T KOG3617|consen 850 ETKDRI-HL---RNTYYNYAKYLEARRDIEAALEYYEKA---GVH-AFEVFR-MLK-----EYPKQIEQYVRRKRDESLY 915 (1416)
T ss_pred hhccce-eh---hhhHHHHHHHHHhhccHHHHHHHHHhc---CCh-HHHHHH-HHH-----hChHHHHHHHHhccchHHH
Confidence 653221 12 234444444455566677776666533 211 111111 111 2334445555666666555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHH
Q 040435 976 SWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYS 1055 (1991)
Q Consensus 976 s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~ 1055 (1991)
.|-. .-+-..|+.+.|+.+|...+. |-++.+..+-.|+.++|.+|-++ . -|....-.|.++|-
T Consensus 916 ~WWg--qYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 916 SWWG--QYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYE 978 (1416)
T ss_pred HHHH--HHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhh
Confidence 5432 222335888888888876643 55666666777777777776543 2 24455556777788
Q ss_pred hcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHH
Q 040435 1056 KCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGI 1135 (1991)
Q Consensus 1056 k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~ 1135 (1991)
..|++.+|..+|-+. .++..-|..|-.++.-++. .-+.-|.. | .++-.+-..+
T Consensus 979 n~g~v~~Av~FfTrA-----qafsnAIRlcKEnd~~d~L-~nlal~s~----~---------------~d~v~aArYy-- 1031 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRA-----QAFSNAIRLCKENDMKDRL-ANLALMSG----G---------------SDLVSAARYY-- 1031 (1416)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHHHhcCHHHHH-HHHHhhcC----c---------------hhHHHHHHHH--
Confidence 888888888777654 3455555555444433322 22222211 1 1111111111
Q ss_pred HHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------------CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1136 AIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------------KNIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1136 ~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------------~d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
.+.|.. ..--+..|-|.|.+.+|+++--+-.+ .|....+.-..-+..+.++++|..++-.
T Consensus 1032 -Ee~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1032 -EELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred -HHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 112211 11234467777887777765322211 3556666666777888889999888876
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1202 MKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1202 M~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
.++ |...+..|...| +.-..++-+.|.-...-.|+ ......+.+.+.+.|.+..|-+-|.++-.
T Consensus 1106 ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1106 ARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 654 555666665543 33334444444332222333 24566677888889998888888877753
No 113
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=0.0044 Score=72.39 Aligned_cols=195 Identities=9% Similarity=0.026 Sum_probs=121.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNG-------LAHEALALVAEMKLGGLQPNAVT-TLSVLSAC 1221 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G-------~~~eAl~lf~eM~~~Gi~Pd~~T-~~~LL~ac 1221 (1991)
.|+-.|.+.+++.+|..+.+++..-+..-|-.-...++.+| +..-|.+.|+-.-+.+..-|.+. --+..+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 35667889999999999998886544333322222233343 24556666665555555444432 22333334
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH-cCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS-YGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~-~g~~e~A 1300 (1991)
.-...+|+.+-++.++. .|=..-|...| .+..+++..|++.+|+++|-.+...--.|..+|.+++.-|.. .+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 44556788888888874 34334344444 467888889999999999988764212366788888776665 5567776
Q ss_pred HHHHHHHHhcCC-C-CchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCc
Q 040435 1301 AGATSRILELEA-Q-NSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAG 1351 (1991)
Q Consensus 1301 ~~~~e~llel~P-~-~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g 1351 (1991)
-.+ +++.+- . ..+..-++++.|..++.+=-|++...+++.. .|.|+
T Consensus 448 W~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pE 495 (557)
T KOG3785|consen 448 WDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPE 495 (557)
T ss_pred HHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcc
Confidence 554 444432 2 2233345588888988888888888877654 44554
No 114
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.22 E-value=6.6e-05 Score=83.71 Aligned_cols=164 Identities=12% Similarity=0.061 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDM 1256 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~ 1256 (1991)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+.|+..+. +.|+ ....|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 34456678888999999999998888753 23445777888888889999999999988765 6774 5677777888
Q ss_pred HHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH
Q 040435 1257 LARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea 1334 (1991)
||..|++++|...|++.... ..--..+|..+..+..+.|+.+.|+..+++.++++|+.+.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 88999999999999887652 2223568888888888899999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHcC
Q 040435 1335 SGTRLLAKERG 1345 (1991)
Q Consensus 1335 ~~vr~~m~~~g 1345 (1991)
.-..+....+|
T Consensus 193 r~~~~~~~~~~ 203 (250)
T COG3063 193 RLYLERYQQRG 203 (250)
T ss_pred HHHHHHHHhcc
Confidence 76655444443
No 115
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=2e-05 Score=90.51 Aligned_cols=226 Identities=14% Similarity=0.103 Sum_probs=141.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
+-+-..|.+.|.+.+|.+.|+.-.+ |-+.+|-.|-..|.+-.+++.|+.+|.+-.+ ..|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh------------
Confidence 3444555555555555555554332 4444455555555555555555555555443 23444444
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
..-....+-..++.++|.++|+...+ -++.+.-++..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 11222333344566677777766654 24555555666677777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1203 KLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1203 ~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
++.|+. +...|..+.-.|.-.+.+|-++..|.+.... |.. -.--..
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst--------------------------------at~-~~~aaD 396 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST--------------------------------ATQ-PGQAAD 396 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh--------------------------------ccC-cchhhh
Confidence 777753 4555666666666666666666666554321 110 011245
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
+|..|.......||+..|.+.++-++..+|++..+++.|+.+-+..|+.++|..+...-+.
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7888888888889999999999999999999999999999999999999998888776554
No 116
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.16 E-value=8.6e-05 Score=85.43 Aligned_cols=192 Identities=13% Similarity=0.090 Sum_probs=160.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTL-SVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~-~LL~a 1220 (1991)
|-.--+-+..+|.+.|.+.+|.+.|+.-.+ |-+.||-.|-..|.+..+++.|+.+|.+-.+ ..|-.+||. .....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHH
Confidence 334446678899999999999999987654 7788999999999999999999999999876 467777765 45567
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
+...+..++|.++++...+ ..| +++...|+...|.-.++.|-|+.+++++.+-..-++..+..+.-+|.-.++++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 7888999999999999876 455 688889999999999999999999999876434577899999999999999999
Q ss_pred HHHHHHHHHhcC--C-CCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1300 GAGATSRILELE--A-QNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1300 A~~~~e~llel~--P-~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+.-.+++++..- | ..+..+..|+.+....|++.-|.+..+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrl 420 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRL 420 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHH
Confidence 999999998753 3 3467789999999999999998876553
No 117
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.16 E-value=0.00052 Score=88.65 Aligned_cols=282 Identities=15% Similarity=0.092 Sum_probs=164.5
Q ss_pred HHHhcCCHHHHHHHHHhcCC--Cchhhh-hHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh----h--c
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--PDVVLW-STMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS----V--A 1123 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~d~~sy-n~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a----~--~ 1123 (1991)
.+...|+.++|.+.++.-.. .|..+| ......|.+.|+.++|..+|+.+.+. .|+...|-..+..|. . .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34566777777777765443 444443 33445566677777777777777765 366666655555544 1 1
Q ss_pred cChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCH-HHHHHHHHhccCCCH-hHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAI-EASRKAFDQISRKNI-VSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~-e~A~~lf~~m~~~d~-~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
.+.+.-.+++..+...-...+.. .-+.-.+..-..+ ..+...+..+..+.+ ..++.|-..|....+..-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 13344455555443322111110 0010001110111 112222233333444 3455555555544444444455555
Q ss_pred HHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHH
Q 040435 1202 MKLG----G----------LQPNAV--TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1202 M~~~----G----------i~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~e 1264 (1991)
+... | -.|... ++..+...|.+.|++++|+++++..++ ..|+ ++.|..-...|-+.|+++
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHH
Confidence 4322 1 123332 445556667789999999999998876 5776 788888899999999999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-------hHH--HHHHHHHHhCCCchhHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS-------AGY--LLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~-------~~y--vlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.++....-..-|..+-+-....+.+.|+.+.|+..+......+-+.. ..| +-.+.+|...|++..|.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999988764445666666777777888999999988877655442111 123 33388999999999988
Q ss_pred HHHHHH
Q 040435 1336 GTRLLA 1341 (1991)
Q Consensus 1336 ~vr~~m 1341 (1991)
+-...+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 755443
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.12 E-value=0.014 Score=72.25 Aligned_cols=147 Identities=12% Similarity=0.048 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc-chhHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1092 REAIAVFQEMNQA-QEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAE-EVAVGTAVVDMYAKCGAIEASRKAFD 1169 (1991)
Q Consensus 1092 eeAl~lf~~M~~~-Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~-d~~v~naLI~~y~k~G~~e~A~~lf~ 1169 (1991)
+.....+.+.... .+.|+ .+|...++...+..-++.|+.+|..+.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3344444444432 22333 345556666666666666777777766665555 66666677666664 55566666666
Q ss_pred hccC--CCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1170 QISR--KNI-VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1170 ~m~~--~d~-~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
.-.+ +|. .--...+.-+...++-..|..+|++....++.||. ..|...|.--+.-|++..+.++-+++...
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4332 222 22334444455555555566666666555444433 24555555555555555555555544443
No 119
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.11 E-value=0.0001 Score=88.95 Aligned_cols=158 Identities=10% Similarity=0.090 Sum_probs=114.2
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS----HGGLV 1227 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~----~~G~~ 1227 (1991)
..+|...|++++|+++++.. .+.......+..|.+.+|.+.|.+.++.|.+. ..|.. ...+..++. ....+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhH
Confidence 34566788888888888766 45666677788899999999999999999863 34544 333444432 23368
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh-hHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT-ELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~-e~A~~~~e~ 1306 (1991)
.+|..+|+++.+. ..+++...+.+.-++...|++++|.+++++.....+-++.++..++..+...|+. +.+.+...+
T Consensus 184 ~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 8899999988654 4567778888888888899999999998887765555777888888877888876 667788888
Q ss_pred HHhcCCCCch
Q 040435 1307 ILELEAQNSA 1316 (1991)
Q Consensus 1307 llel~P~~~~ 1316 (1991)
+....|+++.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 8888888654
No 120
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.002 Score=79.88 Aligned_cols=211 Identities=10% Similarity=0.049 Sum_probs=117.3
Q ss_pred HHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCH----------hHHHHHHHH
Q 040435 1116 LLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNI----------VSWSAMVAA 1185 (1991)
Q Consensus 1116 lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~----------~s~n~LI~a 1185 (1991)
+.++.-+..+++.+.+-+...+... .+..-++..-.+|...|.+......-+...+..- .+...+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 3344444444555555555444443 3444445555555555555544443333222110 112223345
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHHcCCHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE-HYSCMVDMLARAGELD 1264 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~-~y~~Li~~l~r~G~~e 1264 (1991)
|.+.++++.|+..|.+.......||..+ +....+++....+...- +.|... --..=...+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHH
Confidence 5566677777777777665544443321 22233444444443321 444321 1111145556677777
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|++.+.++..+.+.|...|.....+|.+.|++..|..-++..++++|+....|+.=+.++....+|+.|.+....
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777776655666777777777777777777777777777777777777777777777777777777665553
No 121
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.04 E-value=0.03 Score=79.61 Aligned_cols=192 Identities=12% Similarity=0.061 Sum_probs=110.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-------C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHH
Q 040435 1149 TAVVDMYAKCGAIEASRKAFDQISR-------K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLG--GLQPN--AVT 1213 (1991)
Q Consensus 1149 naLI~~y~k~G~~e~A~~lf~~m~~-------~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~--Gi~Pd--~~T 1213 (1991)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+.+.... ...+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 3444555666777776666654432 1 1122334445566668888888877776542 11121 223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHCccCCCCCH----HHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-----SCMVDMLARAGELDIAIDLINQMPDNLKATA----SAW 1284 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-----~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~----~~~ 1284 (1991)
+..+.......|+.++|.+.+..+............+ ......+...|+.+.|.+++........... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 3334455667788888888877764321111111111 1122344557888888888877653211111 124
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCC------CCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEA------QNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P------~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..+..++...|+.++|...++++++... .....+..++.+|...|+.++|......
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~ 756 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLE 756 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566677778888888888888877521 1234567778888899998888765443
No 122
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.03 E-value=0.00074 Score=75.58 Aligned_cols=193 Identities=10% Similarity=0.061 Sum_probs=138.9
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
|...|+...|+.-++.+++.. +.+..++..+...|-+.|..+.|.+-|+.... .+-...|....-+|..|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 344444444444444444432 22344566677778888888888888876653 35566777777788888999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1197 ALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
..|++....-.-| -..||..+.-+-.+.|+.+.|.++|++.++ ..|+ ....-.|.....+.|++-.|..+++...
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 9888887642211 234677776666788999999999988876 5664 5677788888889999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+..++..+.--.|..-...||...+.+.-.++-.+-|....
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 776678777777777888889988888877777778887654
No 123
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.02 E-value=8.8e-05 Score=89.53 Aligned_cols=150 Identities=13% Similarity=0.017 Sum_probs=114.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH---HHHHHHHHHHHcC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE---HYSCMVDMLARAG 1261 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~---~y~~Li~~l~r~G 1261 (1991)
.|...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.+ +..|.. ...+.+.++.-..
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCch
Confidence 455579999999988642 3456666778889999999999999999954 555532 2233344333334
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh-HHHHHHH
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE-SSGTRLL 1340 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e-a~~vr~~ 1340 (1991)
.+.+|..+|+++.++..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++.+....|+..+ +.+....
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 799999999999888888999999999999999999999999999999999999999999999999999844 5556665
Q ss_pred HHH
Q 040435 1341 AKE 1343 (1991)
Q Consensus 1341 m~~ 1343 (1991)
++.
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 554
No 124
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0015 Score=77.84 Aligned_cols=197 Identities=13% Similarity=0.005 Sum_probs=139.0
Q ss_pred HhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHH---HHHHHH--------------------------
Q 040435 1138 RRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAM---VAAYGM-------------------------- 1188 (1991)
Q Consensus 1138 k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~L---I~ay~~-------------------------- 1188 (1991)
..-++.++....++.+.|...|+.++|...|+....-|..+..+| ...+.+
T Consensus 225 ~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 225 NTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred hccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 445777888889999999999999999999987664332222211 111122
Q ss_pred --------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 040435 1189 --------NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1189 --------~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~ 1258 (1991)
.++++.|+.+-++-++ +.|+.+ .+..=..++...|++++|.-.|+.... +.| +...|.-|+..|.
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHH
Confidence 3455566666555554 223222 333333566788999999999998754 777 6899999999999
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHH-HHHH-HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALL-SACR-SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll-~a~~-~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..|++.||.-+-+....-++.++.+..-+. ..|. ...--|.|.+.+++.+.++|.-..+.+.++.++...|+.+|+..
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 999999998776654433344555554442 2333 23346899999999999999999999999999999999999888
Q ss_pred HHH
Q 040435 1337 TRL 1339 (1991)
Q Consensus 1337 vr~ 1339 (1991)
+.+
T Consensus 460 LLe 462 (564)
T KOG1174|consen 460 LLE 462 (564)
T ss_pred HHH
Confidence 644
No 125
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.97 E-value=0.0012 Score=85.42 Aligned_cols=258 Identities=10% Similarity=0.037 Sum_probs=182.2
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhc---
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITII-NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKC--- 1158 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~-~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~--- 1158 (1991)
..+...|++++|++.+.+-.. ..+|..++. .....+.++|+.++|..++..+++.+. .+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 345788999999999977443 456666554 455667899999999999999999984 4455556666655322
Q ss_pred --CCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1159 --GAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLA-HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1159 --G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~-~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
...+...++|+++.. |.......+.-.+.....+ ..+..++..+...|+++ +|..|-.-|......+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 256777888888765 3322222232222222223 34556777788888754 455555556655555555555
Q ss_pred HHHhHHhc---C----------CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1234 FNSMVQDH---G----------VEPAL--EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1234 ~~~M~~~~---g----------i~P~~--~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+..+.... + -.|+. .++..+...|.+.|++++|++++++..+..+-.+..|..-...+...|+++
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544321 1 12333 345667788999999999999999988754445778888899999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.|.+.++.+.++++.|--...-.+..+-.+|+.++|.++-..-.+.+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 999999999999999887777778889999999999998887666555
No 126
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.96 E-value=0.00014 Score=78.80 Aligned_cols=124 Identities=10% Similarity=0.052 Sum_probs=103.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
.+|++..+ +.|+. +..+..++...|++++|...|+..+. +.| +...|..+..++.+.|++++|...++++..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556554 34554 44566778899999999999998875 667 578889999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
..+.+...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 6666889999999999999999999999999999999999998888776543
No 127
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00013 Score=90.63 Aligned_cols=190 Identities=14% Similarity=0.073 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----C---CHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-----P---NAVTTL 1215 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-----P---d~~T~~ 1215 (1991)
.|--|.-.-+..++=..|+..+.+..+ .+....-+|...|...|.-.+|+.+++.-+....+ + +..+-.
T Consensus 321 AW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~ 400 (579)
T KOG1125|consen 321 AWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFEN 400 (579)
T ss_pred HHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccC
Confidence 333344444444555556666665554 36677778888899999999999998887653211 0 000000
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
. ....+...+....++|-.+....+.++|+..+.+|.-+|--.|.+++|.+.|+.+...-+-|..+|+-|....+...
T Consensus 401 ~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~ 478 (579)
T KOG1125|consen 401 T--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN 478 (579)
T ss_pred C--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc
Confidence 0 11122333556677777777777767788899999999999999999999999998754568899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
+.++|+.+|.+++++.|.-.-+...|+..|.-.|.++||.+..
T Consensus 479 ~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 479 RSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred ccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999888999999999999999998754
No 128
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.88 E-value=0.00082 Score=79.11 Aligned_cols=178 Identities=12% Similarity=-0.007 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-H---hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-I---VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TT 1214 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~---~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~ 1214 (1991)
...+-.+...|.+.|++++|...|+++.+ |+ . ..|..+..+|.+.|++++|+..++++.+.. |+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHH
Confidence 33444555566666666666666665543 22 1 345556666666666666666666666532 2211 23
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1215 LSVLSACSHG--------GLVEEGLSFFNSMVQDHGVEPALE-HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1215 ~~LL~ac~~~--------G~~e~A~~i~~~M~~~~gi~P~~~-~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..+..++... |+.++|.+.++.+.+ ..|+.. .+..+.. .+...... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~a~~~----~~~~~~~~-------------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR---RYPNSEYAPDAKKR----MDYLRNRL-------------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH---HCCCChhHHHHHHH----HHHHHHHH-------------HHHHH
Confidence 3333333332 456666666666654 233321 1111111 00000000 01112
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
.+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|....+.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566788899999999999999987765 468899999999999999999877766543
No 129
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.84 E-value=0.0083 Score=75.26 Aligned_cols=252 Identities=10% Similarity=-0.021 Sum_probs=144.8
Q ss_pred hhhhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhh----ccChHHHHHHHHHHHHhcccc-chhHHHHHHHHHHh
Q 040435 1084 GFTLCGRPREAIAVFQEMNQAQEKPNAI-TIINLLEACSV----ATELSSSKWAHGIAIRRCLAE-EVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1084 ~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~-d~~v~naLI~~y~k 1157 (1991)
.+...|+.++|.+++++..+. .|+.. .+.. ..++.. .+....+.+.... .....+ .......+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 445677788888888777664 34333 2221 111112 2333333333332 111122 23344455567788
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPNA--VTTLSVLSACSHGGLVEEGL 1231 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~--~T~~~LL~ac~~~G~~e~A~ 1231 (1991)
.|++++|...+++..+ .+...+..+...|...|++++|+.++++.....- .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 8999999988887764 3456777888888889999999999888776421 1232 23445666778889999999
Q ss_pred HHHHHhHHhcCCCCCHH-H--HHHHHHHHHHcCCHHHHHHH---HHHCccCC--CCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1232 SFFNSMVQDHGVEPALE-H--YSCMVDMLARAGELDIAIDL---INQMPDNL--KATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P~~~-~--y~~Li~~l~r~G~~eeA~~l---~~~m~~~~--~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
++++.+.......+... . ...+...+...|..+.+.++ ........ ............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 99988743211111111 1 11333334444533333332 11111100 11223333566667788889999888
Q ss_pred HHHHHhcCCC---------CchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1304 TSRILELEAQ---------NSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1304 ~e~llel~P~---------~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
++.+....-. .....++.+.++...|++++|......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887653211 244556778899999999998876543
No 130
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.78 E-value=0.0012 Score=75.57 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=109.8
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGL 1231 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~ 1231 (1991)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777787777655543332221 01222556677777777776643 456667777778888888888888
Q ss_pred HHHHHhHHhcCCCC-CHHHHHHHHHHH-HHcCC--HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1232 SFFNSMVQDHGVEP-ALEHYSCMVDML-ARAGE--LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P-~~~~y~~Li~~l-~r~G~--~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
..|+...+ +.| +...+..+..++ .+.|+ .++|.+++++..+..+.+..++..|..++...|++++|+..++++
T Consensus 94 ~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887765 566 467777777754 66676 488888888887755567788888888888888888888888888
Q ss_pred HhcCCCCchHHH
Q 040435 1308 LELEAQNSAGYL 1319 (1991)
Q Consensus 1308 lel~P~~~~~yv 1319 (1991)
++++|.+..-+-
T Consensus 171 L~l~~~~~~r~~ 182 (198)
T PRK10370 171 LDLNSPRVNRTQ 182 (198)
T ss_pred HhhCCCCccHHH
Confidence 888877665443
No 131
>PLN02789 farnesyltranstransferase
Probab=97.77 E-value=0.0032 Score=77.16 Aligned_cols=170 Identities=11% Similarity=0.058 Sum_probs=125.4
Q ss_pred HHhcC-CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1155 YAKCG-AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA--HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1155 y~k~G-~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~--~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
+.+.| .+++++..++++.+ ++..+|+.....+.+.|+. ++++.++++|.+.. +-|..+|.....++.+.|+++
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHH
Confidence 33445 56888888877664 4556777665556666653 67888888888754 235677888888888889999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc---CC----HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC----C
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA---GE----LDIAIDLINQMPDNLKATASAWGALLSACRSYG----N 1296 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~---G~----~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g----~ 1296 (1991)
++++.++.+++ ..| +...|+....++.+. |. .+++.++..++....+-|..+|+-+.+.+..++ +
T Consensus 160 eeL~~~~~~I~---~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~ 236 (320)
T PLN02789 160 DELEYCHQLLE---EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS 236 (320)
T ss_pred HHHHHHHHHHH---HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc
Confidence 99999999986 344 455666665555554 32 356778877776655678899999999998843 4
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
..+|...+.++++.+|.++.+.-.|+.+|+..
T Consensus 237 ~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 237 DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred chhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999874
No 132
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.77 E-value=0.00089 Score=76.54 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=117.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++ ..| +...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998886544433221 11 012236677888888887766 456 6889999999999999
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHH-HHcCC--hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSAC-RSYGN--TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~-~~~g~--~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
++++|...+++.....+.+..+|..+..++ ...|+ .++|..+++++++++|+++.++.+|+..+...|++++|....
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999875566888999988874 67776 599999999999999999999999999999999999999988
Q ss_pred HHHHHc
Q 040435 1339 LLAKER 1344 (1991)
Q Consensus 1339 ~~m~~~ 1344 (1991)
+.+.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 877543
No 133
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.75 E-value=0.019 Score=71.92 Aligned_cols=193 Identities=15% Similarity=0.039 Sum_probs=107.4
Q ss_pred HHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCH--hHHHHHHHHHHHcC
Q 040435 1118 EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNI--VSWSAMVAAYGMNG 1190 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~--~s~n~LI~ay~~~G 1190 (1991)
..+...|+++.|...+....+.. +.+...+..+...|...|++++|...+++..+ ++. ..|-.+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 34455566666666666665544 23345566677777788888888888876654 122 24556777788888
Q ss_pred CHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHhHHhcCC-CCCHHHHHHHHHHHHHcCCH
Q 040435 1191 LAHEALALVAEMKLGGL-QPNAVTT-L--SVLSACSHGGLVEEGLSF--FNSMVQDHGV-EPALEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~Gi-~Pd~~T~-~--~LL~ac~~~G~~e~A~~i--~~~M~~~~gi-~P~~~~y~~Li~~l~r~G~~ 1263 (1991)
+.++|+.++++...... .+..... + .++.-....|..+.+.+. .........- ..........+.++...|+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 280 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK 280 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence 88888888888754321 1122211 1 223333344433333332 1111111000 00112223466677788889
Q ss_pred HHHHHHHHHCccCCCC---C----HHHHHHHHH--HHHHcCChhHHHHHHHHHHhcC
Q 040435 1264 DIAIDLINQMPDNLKA---T----ASAWGALLS--ACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~p---d----~~~~~~Ll~--a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
++|..+++.+...... . ..+...++. ++...|+.+.|.+.+..++++-
T Consensus 281 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 281 DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999988877542111 1 112222233 3557889999998888887653
No 134
>PF12854 PPR_1: PPR repeat
Probab=97.70 E-value=5.2e-05 Score=60.10 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1242 GVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1242 gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|+.||..+|++||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 135
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.046 Score=68.29 Aligned_cols=166 Identities=15% Similarity=0.094 Sum_probs=119.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVT-TLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T-~~~LL~ac~~~G~~ 1227 (1991)
+...|.+.++++.|...|.+... ++.. ...+....++++...+...- +.|.... ...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34477777899999999887543 1211 12233445666666555543 3444421 22224567789999
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
..|...|.++++ ..| |...|+...-+|.+.|.+.+|++=.+...+..++....|.-=..++....+++.|.++|++
T Consensus 375 ~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 457 5789999999999999999999888777664455566676666777777899999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhC
Q 040435 1307 ILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1307 llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.++++|++......+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999888776666666653
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.70 E-value=0.00066 Score=86.34 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=147.7
Q ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1040 FESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEA 1119 (1991)
Q Consensus 1040 ~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a 1119 (1991)
++|--..-..+...+.++|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444455567778889999999999999876 5788888999999998899888887766 36676666555444
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
.....- +++|.++++....+--.+|+.++ .+.++++++.+.|
T Consensus 467 ~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHDPSL-----------------------------------YEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHL 508 (777)
T ss_pred ccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHH
Confidence 433333 34444444433322111222211 2256777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC
Q 040435 1200 AEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
+.-.+.. ..-.-||-.+-.+..+.++++.|.+.|...+. ..|+ .+.|+.+..+|.+.|+..+|...+.+..+-..
T Consensus 509 e~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 509 ERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 7654422 22334566665566677777777777776654 6674 56778888888888888888877777765324
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
-+..+|...+-....-|+.++|.+++.+++++.-+
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 45567777777777778888888888877765443
No 137
>PF12854 PPR_1: PPR repeat
Probab=97.69 E-value=4.4e-05 Score=60.56 Aligned_cols=34 Identities=44% Similarity=0.644 Sum_probs=26.8
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP 970 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~ 970 (1991)
+|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888888774
No 138
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.63 E-value=0.00051 Score=74.40 Aligned_cols=105 Identities=11% Similarity=-0.041 Sum_probs=91.0
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1232 SFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
.+++..++ +.|+ ++..+...+...|++++|.+.++......+.+..+|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555443 5555 455678889999999999999999887666789999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1312 AQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1312 P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
|+++..+..++.+|...|+.++|......-
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999876543
No 139
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.63 E-value=0.0022 Score=86.00 Aligned_cols=123 Identities=15% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..|..+..+.|.+++|.++++...+ +.|+ ......+...|.+.+++++|+..+++....-+.+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 44444444444555555555555554443 4443 2334444445555555555555555554433334444444444
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
++...|+.++|..+|+++++.+|+++.+++.+++++...|+.++|..
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 55555555555555555555555555555555555555555555544
No 140
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.59 E-value=0.0062 Score=82.07 Aligned_cols=200 Identities=13% Similarity=0.145 Sum_probs=91.3
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...|-..|....+.++.++|.+++++.+.. +.+... +.-..+|.+++++
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REe------------------------------eEKLNiWiA~lNl 1506 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREE------------------------------EEKLNIWIAYLNL 1506 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchh------------------------------HHHHHHHHHHHhH
Confidence 345666666667777777777777666542 211110 0011233333333
Q ss_pred HHhcCCHHHHHHHHHhccC-CC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR-KN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLS 1232 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~-~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~ 1232 (1991)
--.-|.-+...++|+++.+ -| ...|..|...|.+.++.++|.++|+.|.+. ++-....|...+..+.+...-+.|..
T Consensus 1507 En~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~ 1585 (1710)
T KOG1070|consen 1507 ENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARE 1585 (1710)
T ss_pred HHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHH
Confidence 3333444444444444443 11 233444444455555555555555555432 22233344444444444444444555
Q ss_pred HHHHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1233 FFNSMVQDHGVEPA---LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1233 i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
++.+.++ .-|. +....-.+.+-.+.|+.+.+..+|+......+.-...|+.++..-.+||+.+.++.+|+++++
T Consensus 1586 lL~rAL~---~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1586 LLKRALK---SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred HHHHHHh---hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4444433 2222 222333334444455555555555544332222334555555555555555555555555544
No 141
>PLN02789 farnesyltranstransferase
Probab=97.55 E-value=0.0053 Score=75.29 Aligned_cols=176 Identities=12% Similarity=0.101 Sum_probs=133.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNG-LAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G-~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
.+-..+.+.++.++|+.+.+++.+ | +..+|+..-..+...| .+++++..++++.+...+ +..+|..--..+.+.|
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~ 120 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG 120 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence 344455566888999999988775 3 4457776666777777 579999999999976422 3344554444455566
Q ss_pred C--HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc---CCh--
Q 040435 1226 L--VEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY---GNT-- 1297 (1991)
Q Consensus 1226 ~--~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~---g~~-- 1297 (1991)
. .++++.+++.+++ +.| +...|+....++.+.|++++|++.++++.+..+.+..+|+.....+... |..
T Consensus 121 ~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 121 PDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred chhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccc
Confidence 5 3678889988876 567 5778888889999999999999999999876667889999988777654 222
Q ss_pred --hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1298 --ELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1298 --e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+.+....+++++++|++.+++..++.+|...+
T Consensus 198 ~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~ 231 (320)
T PLN02789 198 MRDSELKYTIDAILANPRNESPWRYLRGLFKDDK 231 (320)
T ss_pred cHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCC
Confidence 46777778999999999999999999997743
No 142
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.53 E-value=0.076 Score=75.56 Aligned_cols=367 Identities=12% Similarity=-0.027 Sum_probs=183.3
Q ss_pred HHHHHHHHHhcCCchHHHHHHhhcCCCChHH--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 040435 744 GNALMDFYMKWRFPDSAVAVFDDCICRDSVS--WNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG 821 (1991)
Q Consensus 744 ~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s--~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g 821 (1991)
+......|...|++.+|.............. .......+...|+++.+..++..+.......+..........+...|
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3444555677788777777666665442221 11111234456777777777665522111111112223333445667
Q ss_pred ChHHHHHHHHHHHHhCCC------CchH-HHHHHH-HHHhh-CCHHHHHHHHHhcC----CCCH----HHHHHHHHHHHH
Q 040435 822 AYYEGLQVHGYIIRSGLW------AVHS-VQNSVL-SMYVD-ADMECARKLFDEMC----ERDV----ISWSVMIGGYVQ 884 (1991)
Q Consensus 822 ~~~~a~~l~~~~~k~G~~------~d~~-v~naLi-~~yak-g~~e~A~~vf~~m~----~~d~----~syn~LI~a~~~ 884 (1991)
+++++..++..+...--. +... ....+. ..+.. |+++.|...+++.. ..+. ..++.+...+..
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~ 503 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC 503 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence 888888877766543111 1111 111121 12222 78888887776642 2221 234555556677
Q ss_pred cCChHHHHHHHHHHHhCC---C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHH
Q 040435 885 SAEAFSGLRLFRQMVSGF---K-NEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYR----GLGC---DLFVGNSLIDMY 953 (1991)
Q Consensus 885 ~G~~~eAl~lf~~M~~~~---g-v~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~----g~~p---d~~v~naLI~~y 953 (1991)
.|++++|...+.+..... | ..+-..++..+...+...|+++.|...+...... +... ....+..+...+
T Consensus 504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 888888888887765320 0 0011123344444566677777777776665442 2111 122333444555
Q ss_pred HhcCChHHHHHHhccCCC------C--CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCC
Q 040435 954 AKCKDTDSAFKVFSEMPQ------K--NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV-DEITLVNILQICKCFVH 1024 (1991)
Q Consensus 954 ~k~G~~e~A~~lf~~m~~------~--dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P-d~~T~~~lL~a~~~~g~ 1024 (1991)
...|++++|...+++... + ....+..+...+...|+.++|...+.+.....-.. ....+.
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~----------- 652 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI----------- 652 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh-----------
Confidence 566777777666655421 1 12223334445556666666666665553210000 000000
Q ss_pred hhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCch-------hhhhHHHHhhhhcCChHHHHHH
Q 040435 1025 PMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDV-------VLWSTMIAGFTLCGRPREAIAV 1097 (1991)
Q Consensus 1025 ~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~-------~syn~LI~~y~~~g~~eeAl~l 1097 (1991)
.......+..+...|+.+.|...+.....+.. ..+..+...+...|+.++|...
T Consensus 653 -------------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 713 (903)
T PRK04841 653 -------------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEII 713 (903)
T ss_pred -------------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00001112333446666666666655443211 1123445566677777777777
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHHhhccChHHHHHHHHHHHHhc
Q 040435 1098 FQEMNQA----QEKPNA-ITIINLLEACSVATELSSSKWAHGIAIRRC 1140 (1991)
Q Consensus 1098 f~~M~~~----Gv~Pd~-~T~~~lL~a~a~~g~le~a~~i~~~~~k~g 1140 (1991)
+.+.... |..++. .+...+-.++...|+.+.|...+..+.+..
T Consensus 714 l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 714 LEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 7765442 322222 234445555667788888877777777654
No 143
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.01 Score=68.06 Aligned_cols=178 Identities=10% Similarity=0.066 Sum_probs=110.4
Q ss_pred CCHHHHHHHHHhcc-CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1159 GAIEASRKAFDQIS-RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~-~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
+++-.++.+.+... +.+..+.+.......+.|++++|++-|+...+-|---....|+..+. ..+.|+.+.|+++..++
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEI 204 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 45555555555555 23444444444444556666666666666554322222444554442 33445666666666655
Q ss_pred HHhcCCC-------------CC--------HHHHHHHH-------HHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHH
Q 040435 1238 VQDHGVE-------------PA--------LEHYSCMV-------DMLARAGELDIAIDLINQMPDN--LKATASAWGAL 1287 (1991)
Q Consensus 1238 ~~~~gi~-------------P~--------~~~y~~Li-------~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~L 1287 (1991)
+++ |++ || .-|-+.++ ..+.+.|+++.|.+-+..||-+ -..|+++...+
T Consensus 205 ieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 205 IER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 542 321 11 12233343 3456789999999999999864 44577777665
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.-. -..++...+.+-+.-+++++|-.+.++..+.-+|++..-++-|+.+..
T Consensus 284 Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 284 ALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 432 234566667777788899999888999999999999999999888765
No 144
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.50 E-value=0.0058 Score=82.00 Aligned_cols=141 Identities=9% Similarity=0.009 Sum_probs=121.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHH
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYS 1251 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~ 1251 (1991)
.++..+-.|.....+.|+.++|+.+++...+ +.||.. ....+..++.+.+.+++|+..+++... ..|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 3577888888899999999999999999987 678766 466777889999999999999998875 6775 67888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
.+..++.+.|++++|.++|+++....+.+..+|..+..++...|+.+.|..+|+++++......-.|.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 88999999999999999999998655556899999999999999999999999999998766555443
No 145
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.48 E-value=0.0061 Score=82.16 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=161.2
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...+.|++..+. --....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3455666667777788999999999998764 23468999999999999888999999999863 2224458
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGALLSACR 1292 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~ 1292 (1991)
..|+..|.+.+..++|.++++.|.+++| -....|...++.+.+...-++|.++++++.+-.+. ......-...--.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8899999999999999999999999866 56788999999999999999999999988653222 2333344444456
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
++|+.+.|+.+++.++.-.|.....|.....+=.+.|.-+.+.++.++.-..++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 899999999999999999999888888888888888888888888877665554
No 146
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.055 Score=62.39 Aligned_cols=336 Identities=15% Similarity=0.083 Sum_probs=199.3
Q ss_pred HHHHHhcCCchHHHHHHhhcCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCh
Q 040435 748 MDFYMKWRFPDSAVAVFDDCICR---DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVL-VIQACRCLGAY 823 (1991)
Q Consensus 748 i~~y~k~G~~~~A~~lfd~m~~~---d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~-lL~a~~~~g~~ 823 (1991)
+..+.+..++++|.+++..-.++ +....+.|--.|-+..++..|-+.|+++-.. .|...-|.. -...+-+.+.+
T Consensus 17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhccc
Confidence 33345667788888887665443 4445555666677788888888888887653 344433332 12333445566
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHH-----HHhhCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 040435 824 YEGLQVHGYIIRSGLWAVHSVQNSVLS-----MYVDADMECARKLFDEMC-ERDVISWSVMIGGYVQSAEAFSGLRLFRQ 897 (1991)
Q Consensus 824 ~~a~~l~~~~~k~G~~~d~~v~naLi~-----~yakg~~e~A~~vf~~m~-~~d~~syn~LI~a~~~~G~~~eAl~lf~~ 897 (1991)
..|..+...|... ....+-.+. .|..+++..++.+.+..+ +.+..+-+.......+.|++++|++-|+.
T Consensus 95 ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6666666555331 222222222 234489999999999998 46666666666667789999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCChHHHHHHhccCCCCC
Q 040435 898 MVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVG----NSLIDMYAKCKDTDSAFKVFSEMPQKN 973 (1991)
Q Consensus 898 M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~----naLI~~y~k~G~~e~A~~lf~~m~~~d 973 (1991)
..+-+|..|- ..|+..|.-+ +.++...|.....+++++|+...+... +-.+++-+-.+-..-+.. .=
T Consensus 170 AlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S-------al 240 (459)
T KOG4340|consen 170 ALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS-------AL 240 (459)
T ss_pred HHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH-------HH
Confidence 9987777764 5677666544 668899999999999999875432211 000000000000000000 01
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHH
Q 040435 974 KVSWNSALSGLVVNEKYSEALSLLYSMGKG-VNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLID 1052 (1991)
Q Consensus 974 v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~-Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~ 1052 (1991)
+..+|.-...+.+.|+++.|.+.+..|.-+ .-..|.+|+..+.-.- ..+++..+..-+..++.... -...++..|+-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 223444445566778888888888888433 2456777766543322 12344555555556665543 34567778888
Q ss_pred HHHhcCCHHHHHHHHHhcCC-----CchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1053 GYSKCHLVELAWKLFNDVKK-----PDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~-----~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
.|+|..-++.|-.++-+=.. -+...|+.|=..-...-..++|++-+..+
T Consensus 319 lyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89998888888888765443 22333333222222234456666555443
No 147
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.42 E-value=0.0044 Score=72.93 Aligned_cols=183 Identities=15% Similarity=0.065 Sum_probs=127.7
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhcccc--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-Hh---HHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAE--EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IV---SWS 1180 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~--d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~---s~n 1180 (1991)
....+......+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. .+.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 45566677778889999999999999988764321 124567788899999999999999999865 32 22 455
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH
Q 040435 1181 AMVAAYGMN--------GLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYS 1251 (1991)
Q Consensus 1181 ~LI~ay~~~--------G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~ 1251 (1991)
.+..++.+. |+.++|++.|+++... .|+.. ....+.... . . .... . ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~-~---~------~~~~-~--------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD-Y---L------RNRL-A--------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH-H---H------HHHH-H--------HHHH
Confidence 555566554 7789999999999874 45543 222221110 0 0 0000 0 1123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
.+.+.|.+.|++++|...+++..... +.....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56677899999999999999886542 22357899999999999999999998887766554
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.39 E-value=0.76 Score=60.91 Aligned_cols=101 Identities=16% Similarity=0.198 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---CChHHHHHHHHHHHhCCChhHHHHHHHH
Q 040435 722 YIHGRLVHACLVKQ-GYESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---RDSVSWNIMIQGHLDHGTLGEGLWWFYK 797 (1991)
Q Consensus 722 ~~~a~~i~~~~lk~-g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---~d~~s~n~LI~a~~~~g~~~~Al~lf~~ 797 (1991)
+..|.+..+.+++. +-.+-..++.+|+ ..|.|+.++|..+++.... .|..|...+-..|-+.+..++|..+|++
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44455444444433 2222233333333 3456666666666655432 2556666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 040435 798 ARVAGFEPNNSILVLVIQACRCLGAYYEG 826 (1991)
Q Consensus 798 M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a 826 (1991)
.... -|+..-...++.++.+.+++..-
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~q 129 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQ 129 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 5543 35555666666666666555443
No 149
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.36 E-value=0.0016 Score=69.45 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
...+...+.+.|++++|.+.++.+....+.+...|..+...+...|+.+.|...++++++.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 33444444445555555555544433223344445455545555555555555555555555555555555555555555
Q ss_pred CchhHHHHH
Q 040435 1330 LWVESSGTR 1338 (1991)
Q Consensus 1330 ~~~ea~~vr 1338 (1991)
++++|....
T Consensus 100 ~~~~A~~~~ 108 (135)
T TIGR02552 100 EPESALKAL 108 (135)
T ss_pred CHHHHHHHH
Confidence 555544433
No 150
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.34 E-value=0.0027 Score=81.02 Aligned_cols=185 Identities=11% Similarity=0.000 Sum_probs=110.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
+.-+|..|+..|+..+|..+.....+ ||...|..+........-+++|.++++..-.. .-..+..-..+.+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNK 499 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccch
Confidence 34455555555555555554433322 34445555555544444455555555443211 0000000111245
Q ss_pred CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1226 LVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1226 ~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
+++++.+.|+.-.+ +.| ...+|-.+.-+..+.++++.|.+.|......-+.+...|+.|-.+|.++|+-.+|.+.+
T Consensus 500 ~fs~~~~hle~sl~---~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128|consen 500 DFSEADKHLERSLE---INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred hHHHHHHHHHHHhh---cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHH
Confidence 66666666665443 444 35567667777777888888888887776644445678888888888888888888888
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+++++.+-++...+-.-..+-...|.|++|.+....|.
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 88888776666655555566677888888887666543
No 151
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.30 E-value=0.00033 Score=55.45 Aligned_cols=35 Identities=29% Similarity=0.520 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA 1211 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~ 1211 (1991)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.29 E-value=0.02 Score=77.53 Aligned_cols=249 Identities=10% Similarity=0.052 Sum_probs=142.8
Q ss_pred chhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchh-hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1043 NELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVV-LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEA 1119 (1991)
Q Consensus 1043 d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~-syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a 1119 (1991)
+...+..|+..|...+++++|.++.+...+ |+.. .|-.+...|.+.++.+++..+ .+.. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~---------------~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID---------------S 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh---------------h
Confidence 344666777777777777777777775443 3332 233333355556665555444 2221 1
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
.....+......++..+.+. ..+...+-.|..+|.+.|+.++|..+++++.+ .|....|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 11112222222222222221 12333555677777778888888888877765 3566777777777777 777787
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHCc
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARA-GELDIAIDLINQMP 1274 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~-G~~eeA~~l~~~m~ 1274 (1991)
+++.+.... +...+.+..+.++|..+.+ ..|+ ...+-.+....... | +
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~--------~---- 219 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE--------F---- 219 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc--------c----
Confidence 777776542 3445567777777777765 3343 22222222222111 1 1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.--..+|--|-..|...++++.+..+++.+++++|.|..+..-++..|. +++.+-..+...++-.|+
T Consensus 220 ---~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 220 ---TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred ---chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcc
Confidence 1123455556666777778888888888888888888877777777766 555554444555544444
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.28 E-value=0.005 Score=76.93 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=104.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
..+|+..+...++++.|.++++++.+. .|+ ....|+.++...++-.+|.+++++.....+.+...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 456677777889999999999998653 455 455688888888999999999999887656677788877888999
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
.++.+.|..+++++.++.|++..+|..|+.+|...|+|++|.-....|
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998776643
No 154
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0097 Score=68.34 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=72.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
..+-.++.-.|+-+.+..+....... -..+.+.....+....+.|++.+|...+.+....-++|...|+.+..+|-+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 33344455555555555555544221 1113334444566666666666666666666554555666666666666666
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1295 GNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
|+.+.|...+.+++++.|.++..+..|+-.|.-.|+.++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666665444
No 155
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.25 E-value=0.085 Score=62.04 Aligned_cols=282 Identities=10% Similarity=0.072 Sum_probs=172.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCchhhhhHHH---HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhhccChHH
Q 040435 1053 GYSKCHLVELAWKLFNDVKKPDVVLWSTMI---AGFTLCGRPREAIAVFQEMNQAQEKPNAITIIN-LLEACSVATELSS 1128 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~~d~~syn~LI---~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~-lL~a~a~~g~le~ 1128 (1991)
.+...|++.+|+.-|....+.|...|-++. ..|...|+..-|+.-+.+..+ ++||-..-.. --....+.|.++.
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHH
Confidence 344455666666666666655554444433 345556666666666666554 3565332110 0112345666666
Q ss_pred HHHHHHHHHHhccccc--------------hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC
Q 040435 1129 SKWAHGIAIRRCLAEE--------------VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1129 a~~i~~~~~k~g~~~d--------------~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~ 1191 (1991)
|..-+..+++...... .......+..+.-.|+...|+.....+.+ -|...|..-..+|...|.
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 6666666665432110 11112223344556788888887777664 466777777788888898
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHH---HH------HHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE----HYSCM---VD------MLA 1258 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~----~y~~L---i~------~l~ 1258 (1991)
+..|+.=++..-+.. .-+..++--+-..+...|+.+.++...++.++ +.|+.. +|-.| +. ...
T Consensus 205 ~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 205 PKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666655432 22344454555556678888888887777654 677632 23222 11 233
Q ss_pred HcCCHHHHHHHHHHCccCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1259 RAGELDIAIDLINQMPDNLKAT-----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd-----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
+.+++.++.+--+...++ .|. ...+..+-.+++..|++.+|++...++++++|++..++.--+.+|....++++
T Consensus 281 e~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred hhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 456677766666655442 333 12334444456678899999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040435 1334 SSGTRLLA 1341 (1991)
Q Consensus 1334 a~~vr~~m 1341 (1991)
|..=...-
T Consensus 360 AI~dye~A 367 (504)
T KOG0624|consen 360 AIHDYEKA 367 (504)
T ss_pred HHHHHHHH
Confidence 87655433
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.25 E-value=0.00036 Score=55.23 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 040435 773 VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN 806 (1991)
Q Consensus 773 ~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd 806 (1991)
++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 157
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.24 E-value=0.017 Score=66.43 Aligned_cols=151 Identities=13% Similarity=0.013 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++...- -++|..+++.+--+|.+.|+.+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 3344444555554444444321 24444445555666666666666666665542 2445556666666666666666
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
+|..-|.+..+ +.| +...++.|.-.|.-.|+++.|..++......-..|..+-..|.-+....|+++.|+.+..+
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666665544 344 2344555555555566666666666555443233555555555555666666666655544
No 158
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.23 E-value=0.017 Score=71.45 Aligned_cols=114 Identities=19% Similarity=0.201 Sum_probs=56.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTL-SVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~-~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~ 1262 (1991)
.+...|++++|+..++.+... .||..-|. .....+...++.++|.+.++.++. ..|+ ....-.+..+|.+.|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCC
Confidence 344455555555555555442 33333332 223344455555555555555543 3444 3333444455555555
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
..+|..+++....+.+.|+..|..|..+|...|+..++..+
T Consensus 390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 55555555555544444555555555555555555555443
No 159
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.21 E-value=0.23 Score=58.59 Aligned_cols=193 Identities=13% Similarity=0.048 Sum_probs=123.5
Q ss_pred HhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1120 CSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS---RKNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1120 ~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~---~~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
+...|+...+......+++.. +.|...+..-..+|.+.|.+..|+.=+.... ..+....--+-..+...|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 334455555555555555443 4456666666777777777777766555443 345556666666777778888887
Q ss_pred HHHHHHHHCCCCCCHHH----HHHH-------H--HHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHH
Q 040435 1197 ALVAEMKLGGLQPNAVT----TLSV-------L--SACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLA 1258 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T----~~~L-------L--~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~ 1258 (1991)
...++-++ +.||... |..| - ......+.+-++++-.+..++ ..|. ...+..+-..+.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccc
Confidence 77777765 5566642 1111 1 112344555566666655544 3454 123344445566
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
..|++.+|++.-.+..+-.+.|+.++.--..||.....++.|+.-|+++.++++++..+-
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 778899998888877764444577888888888888889999999999999998876543
No 160
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.093 Score=60.39 Aligned_cols=155 Identities=13% Similarity=0.107 Sum_probs=71.2
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS----HGGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~----~~G~~e 1228 (1991)
..|.+.|++++|++..+....-+....| +..+.+..+.+-|.+.+++|.+ --+..|.+-|..++. ..+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhh
Confidence 3455556666666665553222222222 2223444455556666666654 123444444444432 223355
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN-TELGAGATSRI 1307 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~-~e~A~~~~e~l 1307 (1991)
+|.-+|++|.++ ..|+..+.+-+..+....|++++|..++++...+...++.+...++..-...|. .+...+...++
T Consensus 191 dAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 555555555432 344444444444444455555555555555544333344444444444444332 23334444444
Q ss_pred HhcCCCC
Q 040435 1308 LELEAQN 1314 (1991)
Q Consensus 1308 lel~P~~ 1314 (1991)
....|++
T Consensus 269 k~~~p~h 275 (299)
T KOG3081|consen 269 KLSHPEH 275 (299)
T ss_pred HhcCCcc
Confidence 4444443
No 161
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.17 E-value=0.0075 Score=64.21 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=91.7
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1198 LVAEMKLGGLQPNA-VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+|++... ..|+. .....+...+...|++++|.+.++.+.. ..| +...+..+...|.+.|++++|...+++...
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555554 34543 3455566677788999999999998865 345 577888889999999999999999998866
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
..+.+...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 556678888889999999999999999999999999987663
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.14 E-value=0.003 Score=67.96 Aligned_cols=95 Identities=14% Similarity=0.011 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+.+..-.+...+...|++++|.++|+-.....+-+..-|..|..+|...|++++|+.+|.++..++|++|.++..++..|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555566777889999999999999887645567889999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~ 1340 (1991)
...|+.+.|.+..+.
T Consensus 114 L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 114 LACDNVCYAIKALKA 128 (157)
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999986653
No 163
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.06 E-value=0.01 Score=74.23 Aligned_cols=127 Identities=11% Similarity=0.116 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
..+..+|+..+...++++.|..+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|......-...|...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 33445666777778999999999999998777677778888888999999999999998642 33555555555668899
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
++.+.|+++.+++++ ..|+ ..+|..|+..|.+.|++++|+-.++.+|-
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999999976 7885 57999999999999999999999999974
No 164
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.02 E-value=0.039 Score=69.42 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=116.3
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC-----CC---CHHH
Q 040435 1044 ELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE-----KP---NAIT 1112 (1991)
Q Consensus 1044 ~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv-----~P---d~~T 1112 (1991)
...|--|-...+..++-..|+..+.+..+ .+....-+|.-.|...|.-.+|++.++.-..... .+ +..+
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 34444444455555555555555555544 3445555666666667766777776666533210 00 0000
Q ss_pred HHHHHHHHhhccChHHHHH-HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHH
Q 040435 1113 IINLLEACSVATELSSSKW-AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGM 1188 (1991)
Q Consensus 1113 ~~~lL~a~a~~g~le~a~~-i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~ 1188 (1991)
-.. ........+....+ +++.....+...|..++..|.-.|--.|.++.|...|+.... | |...||.|...++.
T Consensus 399 ~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 399 ENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 000 01111111222223 333344455557777888888888888899999999887764 3 67789999888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
..+.++|+.-|.+.++ ++|.-+ ....|.-+|...|.+++|.++|-..+
T Consensus 477 ~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred CcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 8888999999888887 677654 23344456888888888888776654
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.0033 Score=73.33 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+...+-++|+.+| .-..+.+++++|+..|...++ +.|+ ..-|..-..+|.+.|.++.|++=.+.
T Consensus 76 e~~~~AE~LK~eG------------N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG------------NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555666666655 123467899999999998876 7874 56667778899999999999998888
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
.....+-...+|..|..+|...|++++|+++|+++++++|++......|..
T Consensus 141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 876433356799999999999999999999999999999999865444433
No 166
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.00 E-value=0.00096 Score=52.66 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 040435 772 SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEP 805 (1991)
Q Consensus 772 ~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~P 805 (1991)
+.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 167
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=96.97 E-value=0.0011 Score=52.38 Aligned_cols=33 Identities=33% Similarity=0.503 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
.+||++|.+|++.|+.+.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 168
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.93 E-value=0.064 Score=66.56 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|..++|+..++.++.. .| |+.......+.+.+.++.++|.+.++++....+.....|-.+..++...|+..+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 455556666666655442 33 34444555556666666666666666655432223555555556666666666666
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
+.+++.+.-+|+++..|.+|+.+|...|+-.++...+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 6666666666666666666666665555555554444
No 169
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.076 Score=60.66 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=68.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL-SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
-+....|+.+.|...++++...= |...-...+= .-+-..|.+++|.++++.++++ +| |..+|---+-++-..|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcC
Confidence 33444455555555555554331 2222111111 1122345555555555555443 23 3344444444444455
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+--+|++-+.+..+.+..|...|.-|-..|...|+++.|.-.+++++-+.|.++..+-.++.++...|-
T Consensus 135 K~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred CcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 555555555555444555555555555555555555555555555555555555555555555544444
No 170
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.11 Score=59.41 Aligned_cols=159 Identities=16% Similarity=0.164 Sum_probs=119.6
Q ss_pred HHHhcCCHHHHHHHHHhccC--C---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
+..-+|+.+.|...++.+.. | -+.-..+|. +--.|++++|+++++...+.. +.|.+++.-=+...-..|.--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 33446777888888877654 2 222222222 345789999999999999876 557777776666666777777
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATS 1305 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e 1305 (1991)
+|++-+...++. +.-|.+.|.-+.++|...|+++.|.-.++++.-..|-++..+..|...+...| |.+.|.+.|.
T Consensus 138 ~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888877775 67789999999999999999999999999987544556677777777766555 7899999999
Q ss_pred HHHhcCCCCchH
Q 040435 1306 RILELEAQNSAG 1317 (1991)
Q Consensus 1306 ~llel~P~~~~~ 1317 (1991)
+++++.|.+...
T Consensus 216 ~alkl~~~~~ra 227 (289)
T KOG3060|consen 216 RALKLNPKNLRA 227 (289)
T ss_pred HHHHhChHhHHH
Confidence 999999966443
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.63 Score=57.16 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~ 1227 (1991)
.+.-|.-+...|....|.++-.+..-||-.-|-..|.+|+..|++++-.++-.. +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344456667789999999999998889999999999999999999877765432 22347888999999999999
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~ 1294 (1991)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+.. |...+..+...|..+
T Consensus 254 ~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~~k-----d~~~L~~i~~~~~~~ 304 (319)
T PF04840_consen 254 KEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFKEK-----DIDLLKQILKRCPGN 304 (319)
T ss_pred HHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHHcC-----CHHHHHHHHHHCCCC
Confidence 9999888763 23556788999999999988877665 445555555544443
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.78 E-value=0.0085 Score=57.57 Aligned_cols=90 Identities=19% Similarity=0.202 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+...+.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|...++++++..|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455666667777777777776654333444566666666777777777777777777777777766777777777777
Q ss_pred CchhHHHHHH
Q 040435 1330 LWVESSGTRL 1339 (1991)
Q Consensus 1330 ~~~ea~~vr~ 1339 (1991)
++++|.....
T Consensus 83 ~~~~a~~~~~ 92 (100)
T cd00189 83 KYEEALEAYE 92 (100)
T ss_pred hHHHHHHHHH
Confidence 7777665544
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.75 E-value=0.015 Score=72.97 Aligned_cols=103 Identities=14% Similarity=0.103 Sum_probs=86.9
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..+...|++++|+++|+++++ +.| +...|..+..+|.+.|++++|+..++++....+.+...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 445677899999999998876 566 4678888889999999999999999998775556788999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998877665443
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.63 E-value=0.042 Score=66.55 Aligned_cols=137 Identities=11% Similarity=0.130 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.+|-.++...-+.+..+.|..+|.+.++.+ .-....|...... +...++.+.|.++|+..++. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 468888888888888999999999998543 2223334333333 33467777899999999887 4446678888999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+.+.|+.+.|..+|++....+.++. .+|...+.--..+|+.+....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999987644433 59999999999999999999999999999988554
No 175
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=96.61 E-value=0.012 Score=81.13 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=84.6
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeC
Q 040435 1720 YMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATL 1799 (1991)
Q Consensus 1720 ~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~ 1799 (1991)
.+.++++++|.++.|||+.++++.+++++++.+|+..++.+.|+.++ .|+++++++.-+.++++||......+|++..
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~~-~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~- 444 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEKF-IPQDLPSLQARKVIESHMGGSHDFATILVKA- 444 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhhc-CCCCcHHHHHHHHHHHHhCCCCcceEEEEEc-
Confidence 35578899999999999999999999999999999999999998765 6999999999999999998653445666654
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 040435 1800 PDPKNGKQPSIITEDNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1800 ~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l 1829 (1991)
+++.+++.++++.++++.+++.
T Consensus 445 --------~~~~~~~~l~~l~~l~~~l~~~ 466 (719)
T TIGR00921 445 --------DDVRDPELVRFMDELSRDIKAT 466 (719)
T ss_pred --------CCCCCHHHHHHHHHHHHHHhhc
Confidence 2578899999999999888764
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.55 E-value=0.043 Score=61.36 Aligned_cols=131 Identities=14% Similarity=0.126 Sum_probs=91.3
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN--AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYS 1251 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd--~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~ 1251 (1991)
....+..+...|...|++++|+..|++..+.+..+. ...+..+...+.+.|++++|.+++.+.++ +.| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 345677777777888888888888888876433332 34566677777788888888888887765 445 355666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1252 CMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.+..+|...|+...|..-++... ..++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~--------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE--------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH--------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 66777777777666554433322 12577889999999999887 77777777777764
No 177
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.54 E-value=0.0023 Score=49.30 Aligned_cols=31 Identities=32% Similarity=0.593 Sum_probs=27.3
Q ss_pred hhhhHHHHhhhhcCChHHHHHHHHHHHHCCC
Q 040435 1076 VLWSTMIAGFTLCGRPREAIAVFQEMNQAQE 1106 (1991)
Q Consensus 1076 ~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv 1106 (1991)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999988774
No 178
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.53 E-value=0.0025 Score=49.05 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGL 1207 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi 1207 (1991)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888774
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.52 E-value=3.9 Score=51.67 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhcC---CHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1128 SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG---AIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVA 1200 (1991)
Q Consensus 1128 ~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G---~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~ 1200 (1991)
++..+++..+..-...+..+|.++.+.--..- ..+.....++++.. .-..+|-..|..-.+..-...|..+|.
T Consensus 311 e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ 390 (656)
T KOG1914|consen 311 EAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK 390 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence 34455555544443344444444433211111 13333444444432 223467777777777777899999999
Q ss_pred HHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-CC
Q 040435 1201 EMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-LK 1278 (1991)
Q Consensus 1201 eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-~~ 1278 (1991)
+..+.+..+ +.....+++.-+ -.++.+-|.++|+.=++.+|-.| .--.+.++-|.+.++-..|..+|++.... +.
T Consensus 391 kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 391 KAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 999998888 555566666544 46888999999998777655444 34456788889999999999999998764 34
Q ss_pred CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhCCCchhHH
Q 040435 1279 AT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNS----AGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1279 pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~----~~yvlL~~lya~~G~~~ea~ 1335 (1991)
|+ ..+|..+|.--..-|+.+.+.++-++.+..-|.+- ..-.++..-|.-.+....-.
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccH
Confidence 43 46999999999999999999999888877655210 11233445555555554433
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=4.2 Score=52.29 Aligned_cols=386 Identities=11% Similarity=0.080 Sum_probs=189.3
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH--------HHHHHHHHHHccCChHHH
Q 040435 856 DMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ--------SLVSVLKACTNLRDLTMG 927 (1991)
Q Consensus 856 ~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~--------T~~~lL~a~~~~g~~~~a 927 (1991)
.+++|.+..+.- |....|..+.....+.-.++.|...|-+...-.|++.-.. .-.+=+. +--|.+++|
T Consensus 678 gledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHh
Confidence 456666666554 4556787777666666666666666655533223221000 0000111 113556666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 040435 928 RMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQK-----NKVSWNSALSGLVVNEKYSEALSLLYSMGK 1002 (1991)
Q Consensus 928 ~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~-----dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~ 1002 (1991)
++++-.+-++. .-|.++.+.|++-...++++.-..- -..+|+.+-..++....+++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66655554433 2345566666666666665442211 124566666666666666666666654321
Q ss_pred CCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHH
Q 040435 1003 GVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMI 1082 (1991)
Q Consensus 1003 ~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI 1082 (1991)
....+.++-+...+++-+.+ ...++.+....-.+.+|+.+.|.-++|.+.|-+-..|- +-+
T Consensus 825 ---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv 885 (1189)
T KOG2041|consen 825 ---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAV 885 (1189)
T ss_pred ---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHH
Confidence 01122233222222221111 12234455566667778888888888777776655443 234
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
..|...+++.+|.++-++... |...|+ |.-+ +-++ +.+.. + ---|.++.|.|+.-
T Consensus 886 ~tCv~LnQW~~avelaq~~~l----~qv~tl---iak~--------aaql---l~~~~------~-~eaIe~~Rka~~~~ 940 (1189)
T KOG2041|consen 886 HTCVELNQWGEAVELAQRFQL----PQVQTL---IAKQ--------AAQL---LADAN------H-MEAIEKDRKAGRHL 940 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhccc----hhHHHH---HHHH--------HHHH---Hhhcc------h-HHHHHHhhhcccch
Confidence 566667777777776655432 222222 2111 1111 11111 0 12367788888888
Q ss_pred HHHHHHHhccCCCH---hHHHHHHHHHH----HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1163 ASRKAFDQISRKNI---VSWSAMVAAYG----MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFN 1235 (1991)
Q Consensus 1163 ~A~~lf~~m~~~d~---~s~n~LI~ay~----~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~ 1235 (1991)
+|-+++.+|.++.. +.|-.+=..|. -..+..++++-.+.....|..-|... +...|..+++-++.+
T Consensus 941 daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~ 1013 (1189)
T KOG2041|consen 941 DAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILE 1013 (1189)
T ss_pred hHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHH
Confidence 88888877764211 11111111111 11233445555555555554433322 223444444444444
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD--NLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..-+ -....|+-.|..-....|+.+.|++.--.+.. .+-|...+|.-|.-+.+..+.+...-+++-++-.
T Consensus 1014 n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1014 NTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred hhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 3221 11245666666667778999998876544443 2444556665554443333344444444444433
No 181
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.48 E-value=5.8 Score=53.13 Aligned_cols=90 Identities=13% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHHHcCCHH---HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1250 YSCMVDMLARAGELD---IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~e---eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
-+.|++++-|.++.. +|+-+++.-....+-|..+--.||..|.--|-+..|...|+-+--..-...+.=.++...+.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 456777777777644 55555655544334455566667777777788887877777664333333333334456667
Q ss_pred hCCCchhHHHHHH
Q 040435 1327 AGGLWVESSGTRL 1339 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~ 1339 (1991)
..|+|..+.....
T Consensus 519 t~g~~~~~s~~~~ 531 (932)
T KOG2053|consen 519 TSGRSSFASNTFN 531 (932)
T ss_pred hcccchhHHHHHH
Confidence 7778877776543
No 182
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.47 E-value=0.023 Score=54.45 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|..+++.+.+ ..|+ ...+..+...+...|++++|.+.+++.....+.+..+|..+...+...|+.+
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALE---LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 33344445555555544433 2221 2334444555555555555555555544332333345555555566666666
Q ss_pred HHHHHHHHHHhcCC
Q 040435 1299 LGAGATSRILELEA 1312 (1991)
Q Consensus 1299 ~A~~~~e~llel~P 1312 (1991)
.|...++++++..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666666655554
No 183
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.3 Score=56.45 Aligned_cols=142 Identities=11% Similarity=0.020 Sum_probs=110.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH----H
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLA----R 1259 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~----r 1259 (1991)
..|++.|++++|++..... -..+....+. ..+.+...++-|.+.++.|.+ +. +-.+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~---id-ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALNV--QILLKMHRFDLAEKELKKMQQ---ID-EDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHhcc
Confidence 4578899999999988762 2223332222 234567788999999999954 33 3345554555544 3
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
.+.+.+|.-+|++|.++.+|+..+.+-+..+|...|++++|+.+++.++..++.+|.+...+...--..|+-.++.
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHH
Confidence 5689999999999999889999999999999999999999999999999999999998888888888889865543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.43 E-value=0.0074 Score=55.51 Aligned_cols=62 Identities=24% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...+.+.|++++|.+.+++..+..+-+..+|..+..++...|++++|...++++++++|++|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 44566667777777777766665444566666677777777777777777777777777654
No 185
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.41 E-value=0.038 Score=56.97 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC---CCHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK---ATASAWGALLS 1289 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~---pd~~~~~~Ll~ 1289 (1991)
+..+...+...|++++|.+.+..+.+.+.-.| ....+..+..++.+.|++++|.+.++.+....+ ....++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566667777776666654321111 123455566677777777777777776654211 12456666777
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
++...|+.+.|...++++++..|+++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 7777777777777777777777776543
No 186
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.38 E-value=0.063 Score=58.21 Aligned_cols=126 Identities=18% Similarity=0.224 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH--HHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL--EHY 1250 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~--~~y 1250 (1991)
..|..++..+. .++...+...++.+.+.. |+. .....+...+...|++++|...|+..... .-.|.. ...
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHH
Confidence 34555565553 666677777777776543 222 12223335556677777777777776553 112211 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
-.|..++...|++++|+..++..... ......+..+...+...|+.+.|+.+|+++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 34566666677777777777665432 234455666666666777777777766654
No 187
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.37 E-value=0.031 Score=57.61 Aligned_cols=97 Identities=16% Similarity=0.064 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLA 1321 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL 1321 (1991)
..+..++..+.+.|++++|.+.++.+....+.+ ...+..+..++...|+++.|...++++++..|++ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456677888999999999999999997642222 4577778999999999999999999999998885 5678889
Q ss_pred HHHHHhCCCchhHHHHHHHHHHc
Q 040435 1322 SSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+.+|...|++++|........+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999887766554
No 188
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=96.36 E-value=0.0018 Score=74.45 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=31.6
Q ss_pred hhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeecc
Q 040435 482 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVET 530 (1991)
Q Consensus 482 ~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d 530 (1991)
++-+|+| +.. ++|||+|||+|.||++++++||+.. -+..++-+|
T Consensus 157 ftKLrVf--eqt-EyDRvifLDsDaivlknmDklFd~P--vyef~a~pD 200 (368)
T COG5597 157 FTKLRVF--EQT-EYDRVIFLDSDAIVLKNMDKLFDYP--VYEFAAAPD 200 (368)
T ss_pred hHHHHhh--hhh-hhceEEEeccchHHhhhhHHHhcch--hhhhccCCc
Confidence 4445554 332 4899999999999999999999975 233444444
No 189
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.36 E-value=0.72 Score=63.13 Aligned_cols=150 Identities=8% Similarity=0.033 Sum_probs=88.5
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCC
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+..+..+|.+.|..+++..+++.+++.. +.++.+.|.+...|+.. ++++|++++.+.. .-|...++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~~kq 184 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIKKKQ 184 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHhhhc
Confidence 44445555556666666666666666655 55667777777778777 8888887776553 23666678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTT-LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLI 1270 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~-~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~ 1270 (1991)
+.++.++|.++... .|+.+.+ .-++. .+....|..--+..+--+..-|-...+++++..++
T Consensus 185 ~~~~~e~W~k~~~~--~~~d~d~f~~i~~----------------ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 185 YVGIEEIWSKLVHY--NSDDFDFFLRIER----------------KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred chHHHHHHHHHHhc--CcccchHHHHHHH----------------HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 88888888888763 3443332 22222 22221122222334444555566666777777777
Q ss_pred HHCccCCCCCHHHHHHHHHHHH
Q 040435 1271 NQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1271 ~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+.+.+..+.|..+..-|+..|+
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7776644445555666666655
No 190
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.36 E-value=0.11 Score=56.25 Aligned_cols=82 Identities=18% Similarity=0.137 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
+...+...|++++|...|+...... |+ ..+...|...+...|+++.|...++.. .-.+-.+..+.+++.+|...
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHC
Confidence 3344444444444444444444321 11 122333334444444444444444331 12222333344444444444
Q ss_pred CCchhHHH
Q 040435 1329 GLWVESSG 1336 (1991)
Q Consensus 1329 G~~~ea~~ 1336 (1991)
|++++|..
T Consensus 132 g~~~~A~~ 139 (145)
T PF09976_consen 132 GDYDEARA 139 (145)
T ss_pred CCHHHHHH
Confidence 44444443
No 191
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.34 E-value=0.017 Score=72.45 Aligned_cols=89 Identities=15% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
...+.+.|++++|+++++++.+..+.+...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 45567889999999999999876666788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 040435 1334 SSGTRLLAK 1342 (1991)
Q Consensus 1334 a~~vr~~m~ 1342 (1991)
|........
T Consensus 89 A~~~~~~al 97 (356)
T PLN03088 89 AKAALEKGA 97 (356)
T ss_pred HHHHHHHHH
Confidence 998766443
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.30 E-value=0.093 Score=68.64 Aligned_cols=140 Identities=16% Similarity=0.075 Sum_probs=85.8
Q ss_pred CCHhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhHH
Q 040435 1174 KNIVSWSAMVAAYGMNG-----LAHEALALVAEMKLGGLQPNA-VTTLSVLSACSHG--------GLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G-----~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~~~--------G~~e~A~~i~~~M~~ 1239 (1991)
.+...|...+.|..... ....|+.+|++..+ ..|+- ..+..+..++... +.+..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 46667777776644322 26678888888877 45654 2333332222111 122333333333222
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1240 DHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1240 ~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
......+...|..+.-.+...|++++|...++++.. ..|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 111222446676666666667888888888888776 3467777888888888888888888888888888887775
No 193
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=96.21 E-value=0.011 Score=78.62 Aligned_cols=96 Identities=4% Similarity=0.210 Sum_probs=84.5
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCCCCCC
Q 040435 1725 YRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKN 1804 (1991)
Q Consensus 1725 F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~~~~~ 1804 (1991)
|.++|.|+.+||+.++++.+++++++.+|..+++.+++ -.-..|++++..+.-+.++++|| +-++.|.|.-
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~-~~~~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~i------ 72 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSG-TETFLPKDNEEYKNYDRLYKEFG--SGTSLIVVVI------ 72 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCC-ccccCCCchHHHHHHHHHHHhhC--CCCceEEEEE------
Confidence 78999999999999999999999999999999999999 77778999999999999999998 4455665554
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1805 GKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1805 ~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
++.+|++++.++.+.+++++++.+.
T Consensus 73 -e~~dv~~~e~~~~~~~l~~~l~~i~ 97 (727)
T COG1033 73 -EGDDVFSPEVLEALDSLEERLEEIP 97 (727)
T ss_pred -eCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 2236999999999999999999873
No 194
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=5.8 Score=52.11 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=73.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEE 1229 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~ 1229 (1991)
--+.-+...|...+|.++-.+.+-||-..|--=+.+++..+++++-+++-+.+. .++-|.-...+|.+.|+.++
T Consensus 689 dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E 762 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE 762 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH
Confidence 334445566777788888777777777777777777888887777666655543 14556667777888888888
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1230 GLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|.+++-+.. + +.-.+.+|.++|++.+|.++--+-.
T Consensus 763 A~KYiprv~------~----l~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 763 AKKYIPRVG------G----LQEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HhhhhhccC------C----hHHHHHHHHHhccHHHHHHHHHHhc
Confidence 887776441 1 1146777788888887777655443
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.09 E-value=0.0081 Score=55.68 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=38.1
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS 1322 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~ 1322 (1991)
.+.|++++|.++++++....+.+..++..|..+|...|++++|...++++.+.+|+++..+.+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34566666666666655444445566666666666666666666666666666666555544444
No 196
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.96 E-value=0.098 Score=58.21 Aligned_cols=80 Identities=13% Similarity=0.076 Sum_probs=45.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN--AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSC 1252 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd--~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~ 1252 (1991)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|++.++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34556666666666777777777776654322221 23555566666666677777766666654 3332 344444
Q ss_pred HHHHHH
Q 040435 1253 MVDMLA 1258 (1991)
Q Consensus 1253 Li~~l~ 1258 (1991)
+..++.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 554554
No 197
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=95.95 E-value=0.02 Score=76.21 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEE
Q 040435 1718 QGYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILA 1797 (1991)
Q Consensus 1718 ~~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~ 1797 (1991)
...+...|.+.+.+.++||+.++++.++++++..+|..++..++|-++ +.|+++|+.+..+..+++||.- -.-.+++.
T Consensus 365 ~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs-~~~~i~~~ 442 (727)
T COG1033 365 KGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGS-DPITIVLE 442 (727)
T ss_pred chhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCC-ceEEEEEE
Confidence 345668888999999999999999999999999999999999999999 8999999999999999999988 34445555
Q ss_pred eCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1798 TLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1798 ~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
+ ++..+++.++|+.++++.+++..
T Consensus 443 ~---------~d~~dp~~l~~md~l~~~l~~~~ 466 (727)
T COG1033 443 A---------EDVRDPEVLRWMDELEEELEKGE 466 (727)
T ss_pred C---------CCCCChHHHHHHHHHHHHHHhcc
Confidence 4 24489999999999999998764
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.95 E-value=0.086 Score=68.97 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=104.4
Q ss_pred CCCCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHG--G---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARA--------GELDIAIDLI 1270 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~--G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~--------G~~eeA~~l~ 1270 (1991)
.+.+.|...|...+.+..+. + ..++|..+|++.++ ++|+ ...|..+..++... +++..|.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34567888899998886543 2 37799999999986 7887 45555544444322 2344555555
Q ss_pred HHCcc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcc
Q 040435 1271 NQMPD--NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKV 1348 (1991)
Q Consensus 1271 ~~m~~--~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k 1348 (1991)
++... ..+.++.+|.++.-.....|+.++|...++++++++| +..+|++++.+|...|+.++|......-....- -
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P-~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP-G 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-C
Confidence 55433 1344667888887777888999999999999999999 578999999999999999999876543322221 1
Q ss_pred cCcEEEEEE
Q 040435 1349 VAGNSLVHV 1357 (1991)
Q Consensus 1349 ~~g~s~i~v 1357 (1991)
.|..+||+-
T Consensus 486 ~pt~~~~~~ 494 (517)
T PRK10153 486 ENTLYWIEN 494 (517)
T ss_pred CchHHHHHh
Confidence 344666653
No 199
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.80 E-value=0.048 Score=60.65 Aligned_cols=91 Identities=10% Similarity=-0.149 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLK-A--TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~-p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
...|..++..+...|++++|...+++.....+ + ...+|..+...+...|+.++|...+++++++.|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 45667777788888999999999988854211 1 24589999999999999999999999999999999999999999
Q ss_pred HHH-------hCCCchhHHHH
Q 040435 1324 MYA-------AGGLWVESSGT 1337 (1991)
Q Consensus 1324 lya-------~~G~~~ea~~v 1337 (1991)
+|. ..|++++|...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 998 77787766543
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.74 E-value=0.028 Score=52.27 Aligned_cols=60 Identities=22% Similarity=0.210 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC-CchhHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG-LWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G-~~~ea~~vr~ 1339 (1991)
++.+|..+...+...|+++.|+..++++++++|+++..+..++.+|...| ++++|.+...
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 46788888888888899999999999999999998888999999999988 6888776543
No 201
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.71 E-value=0.0089 Score=58.18 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHCccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1260 AGELDIAIDLINQMPDNLK--ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~--pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.|++++|+.+++++.+..+ ++...|..+..++...|+++.|..++++ .+.+|.++....+++.+|...|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3566677777766655311 1445566667777777777777777777 666676666666677777777777777765
Q ss_pred H
Q 040435 1338 R 1338 (1991)
Q Consensus 1338 r 1338 (1991)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 202
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.61 E-value=0.03 Score=65.55 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
.+-+.+.+++++|+..+.++.+-.+.|++.|..-..+|.+.|.++.|++..+.++.++|...-+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 45577889999999999999886667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 040435 1334 SSGTRL 1339 (1991)
Q Consensus 1334 a~~vr~ 1339 (1991)
|+...+
T Consensus 168 A~~ayk 173 (304)
T KOG0553|consen 168 AIEAYK 173 (304)
T ss_pred HHHHHH
Confidence 887744
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.55 E-value=0.025 Score=52.61 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCC
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG-NTELGAGATSRILELEA 1312 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P 1312 (1991)
+...|..+...+.+.|++++|+..|++..+..+.+..+|..+..++...| +.++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678888888999999999999999887755567889999999999999 79999999999999988
No 204
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.53 E-value=0.11 Score=58.18 Aligned_cols=85 Identities=13% Similarity=-0.008 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDN--LKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
...|..+...+.+.|++++|...+++.... ..+ ....|..+...+...|+++.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345677777788888888888888877542 111 14678888888889999999999999999999999888888899
Q ss_pred HHHhCCCc
Q 040435 1324 MYAAGGLW 1331 (1991)
Q Consensus 1324 lya~~G~~ 1331 (1991)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 98888774
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.47 E-value=0.066 Score=63.21 Aligned_cols=104 Identities=13% Similarity=0.008 Sum_probs=91.4
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCCCchHH
Q 040435 1243 VEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1243 i~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
-.| |.+.|-.|...|.+.|+++.|..-+.+..+.-++++..+..+..++.... ...++..+++++++++|.+..+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 356 68999999999999999999999999988766778889988888876543 56889999999999999999999
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1319 LLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
.+|+..+...|++.+|...+.+|-+..-
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998887654
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.37 E-value=5.6 Score=49.00 Aligned_cols=107 Identities=17% Similarity=0.121 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCh
Q 040435 946 GNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 946 ~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~ 1025 (1991)
.+.-|.-+...|....|.++-.+..-||..-|-..|.+++..+++++-..+... +-.++-|-.++.+|...|+.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888888888888888888888889999999888877665432 11346677778888887877
Q ss_pred hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHH
Q 040435 1026 MECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
.+|...... ..+..-+.+|.++|++.+|.+.--
T Consensus 254 ~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHH
Confidence 777665543 123556778888888888766543
No 207
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=95.29 E-value=0.049 Score=76.61 Aligned_cols=99 Identities=14% Similarity=0.110 Sum_probs=82.5
Q ss_pred HHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCce-EEEEEEeCC
Q 040435 1722 LSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRI-EQLILATLP 1800 (1991)
Q Consensus 1722 ~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~-~qvii~~~~ 1800 (1991)
+++|.+++.++.|||+.++++.+++.+++.+|+.+++++.|+.+ +.|+++++++..+..+++||+..-. -+|++.+.
T Consensus 347 ~~~~~~l~~~v~r~p~~vl~v~~~ll~~~~~~~~~l~~~~~~~~-~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~- 424 (910)
T TIGR00833 347 RFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPLIRTGYDDEK-MIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSD- 424 (910)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCcCCCcHh-hcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCC-
Confidence 35788999999999999999999999999999999999888776 5789999999999999999886433 34454531
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 040435 1801 DPKNGKQPSIITEDNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1801 ~~~~~~~~~vL~~~~l~~~~~l~~~I~~l 1829 (1991)
.++-+++.++.+.++++.+++.
T Consensus 425 -------~~~~~p~~l~~l~~l~~~l~~~ 446 (910)
T TIGR00833 425 -------HDVRNPALLADIDRFEREIKAV 446 (910)
T ss_pred -------CCCCCHHHHHHHHHHHHHHhcC
Confidence 2566889999999999988865
No 208
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=95.14 E-value=0.035 Score=76.72 Aligned_cols=86 Identities=8% Similarity=0.117 Sum_probs=72.6
Q ss_pred ccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCCCCCCCCCCCCCCH
Q 040435 1734 ANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIITE 1813 (1991)
Q Consensus 1734 ~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~~~~~~~~~~vL~~ 1813 (1991)
+|||.++++.+++++++..|+.++++++|++ -|.|++++.++..+.++++||. ...++.+.-+ +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~fg~--~~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTE-KQLPKDFESYKWYHVLQREFGT--STKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChh-hhCCCCCHHHHHHHHHHHHHCC--CCeEEEEEEE-------eCCCCCH
Confidence 7999999999999999999999999999995 6789999999999999999982 2334333221 1368999
Q ss_pred HHHHHHHHHHHHHhcc
Q 040435 1814 DNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1814 ~~l~~~~~l~~~I~~l 1829 (1991)
+.++.+.++++.++++
T Consensus 72 ~~l~~i~~l~~~l~~~ 87 (719)
T TIGR00921 72 PVLDYMRRLEQRLREK 87 (719)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999875
No 209
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.13 E-value=0.051 Score=49.90 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=50.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+...+...|+++.|+..++++++..|+++..+..++.+|...|++++|....+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999998776554
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.04 E-value=0.065 Score=50.37 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=48.3
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl 1320 (1991)
.+|.+.+++++|.+.++.+....+.+...|..+...+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 456777778888887777776555567777777777778888888888888888888876654443
No 211
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.00 E-value=2 Score=54.54 Aligned_cols=181 Identities=15% Similarity=0.160 Sum_probs=99.1
Q ss_pred HHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1034 VILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITI 1113 (1991)
Q Consensus 1034 ~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~ 1113 (1991)
.+.+.|-.|+... +.+.++-.|++.+|-++|.+ +|.-..|+++|.+|+.-
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF--------- 674 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF--------- 674 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH---------
Confidence 4445555555432 33455667788888877753 56667777777776531
Q ss_pred HHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHH
Q 040435 1114 INLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAH 1193 (1991)
Q Consensus 1114 ~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~ 1193 (1991)
-..+-+...|+-++-+.+.+.-. ...-++.--.+-..|+...|+.++|..+. +.+|-.+
T Consensus 675 -D~aQE~~~~g~~~eKKmL~RKRA--~WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d 733 (1081)
T KOG1538|consen 675 -DYAQEFLGSGDPKEKKMLIRKRA--DWARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVD 733 (1081)
T ss_pred -HHHHHHhhcCChHHHHHHHHHHH--HHhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHH
Confidence 11222333333333322222111 01111111123344555566666664432 4455555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
-++++-+++-. .+..+...+..-+-+...+..|-++|.+|-. ...++++....|++.||..+-++.
T Consensus 734 ~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 734 MLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred HHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhC
Confidence 55555544432 2334444444444566677778888888732 346788888999999999999998
Q ss_pred ccCCCCC
Q 040435 1274 PDNLKAT 1280 (1991)
Q Consensus 1274 ~~~~~pd 1280 (1991)
++ +.||
T Consensus 800 Pe-~~~d 805 (1081)
T KOG1538|consen 800 PE-FKDD 805 (1081)
T ss_pred cc-cccc
Confidence 87 4444
No 212
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.87 E-value=0.019 Score=45.55 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=30.4
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 78999999999999999999999999999975
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.84 E-value=18 Score=46.91 Aligned_cols=149 Identities=11% Similarity=0.059 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHH
Q 040435 855 ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPD----GQSLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 855 g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd----~~T~~~lL~a~~~~g~~~~a~~l 930 (1991)
|++++|.+++-+|.++|. .|..+.+.|++....++++.- |-..| ...+..+-..++....++.|.+.
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999885 456667778887777776542 22222 23455555555555556666555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
+..-.. ...++.+|.+...+++-+.+-+.+++ |....-.|...+...|..++|.+.|-+.-. |
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p--- 881 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P--- 881 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c---
Confidence 543211 12345555555556665555555554 334555677778888888888877755421 1
Q ss_pred HHHHHHHHHhccCChhhHHHH
Q 040435 1011 TLVNILQICKCFVHPMECKSV 1031 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i 1031 (1991)
...+..|..++.+.+|.++
T Consensus 882 --kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 882 --KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHH
Confidence 1344556666665555444
No 214
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.84 E-value=0.39 Score=52.43 Aligned_cols=125 Identities=10% Similarity=0.102 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCCCH
Q 040435 1207 LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN----LKATA 1281 (1991)
Q Consensus 1207 i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~pd~ 1281 (1991)
+.|...--..|..+....|+..+|...|++... |+-. |....-.+..+....++..+|...++++-+- -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 345555555556666666666666666665542 4433 3444455555555566666666666655431 1222
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
..-.+...+...|..+.|+.+++.++..-|+ +..-..-+..++++|+-+++..
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 2333455566666666666666666666663 3334455556666666555543
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.81 E-value=1.5 Score=54.37 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC---CH----hHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRK---NI----VSWSAMVAAYGM---NGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~---d~----~s~n~LI~ay~~---~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
.|+-.|-...+++...++.+.+... ++ ..--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688889999999999998763 11 122233445566 7899999999999776666788888887776
Q ss_pred HHH---------hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHH---HHCc--cC---CC
Q 040435 1220 ACS---------HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI----AIDLI---NQMP--DN---LK 1278 (1991)
Q Consensus 1220 ac~---------~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee----A~~l~---~~m~--~~---~~ 1278 (1991)
.|- .....++|.+.|.+. +.+.|+..+--.++.++..+|...+ ..++. ..+. ++ ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 652 123477888888755 4577876555555555666664322 22222 1110 11 33
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+-..+.+++.++.-.|+.+.|.+++++++++.|..
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 466788899999999999999999999999998765
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.77 E-value=14 Score=45.23 Aligned_cols=282 Identities=17% Similarity=0.154 Sum_probs=177.1
Q ss_pred cCCHHHHHHHHHhcCC---CchhhhhHHHHhh--hhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhhccChHHH
Q 040435 1057 CHLVELAWKLFNDVKK---PDVVLWSTMIAGF--TLCGRPREAIAVFQEMNQAQEKPNAI--TIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1057 ~G~l~~A~~lf~~m~~---~d~~syn~LI~~y--~~~g~~eeAl~lf~~M~~~Gv~Pd~~--T~~~lL~a~a~~g~le~a 1129 (1991)
.|+-..|++.-.+..+ .|-...-.++.+- .-.|+.++|.+-|+.|... |... -+..|.-.--+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 5666666666554432 3333333333222 2368888888888888752 3222 223344444577888888
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHh--HHHHHHHHHHH---cCCHHHHHHHH
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIV--SWSAMVAAYGM---NGLAHEALALV 1199 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~--s~n~LI~ay~~---~G~~~eAl~lf 1199 (1991)
++.-+..-..-- .-.-...+++...+..|+++.|+++.+.-.. +++. .--.|+.+-+. .-+...|...-
T Consensus 174 r~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777666554431 1234567889999999999999999986553 4442 22233332221 22455555555
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHC
Q 040435 1200 AEMKLGGLQPNAVT-TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGEL-----DIAIDLINQM 1273 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T-~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~-----eeA~~l~~~m 1273 (1991)
.+..+ +.||-+- -.....++.+.|++.+|-.+++.+-+ .+|.+..+...+ +.|.|+. ..|.. ++.|
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~-L~sl 324 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKK-LESL 324 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHH-HHhc
Confidence 44443 6777653 33445678899999999999999875 678776665433 3455642 22222 3344
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC-CCchhHHHHHHHHHHcCCcccCcE
Q 040435 1274 PDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG-GLWVESSGTRLLAKERGVKVVAGN 1352 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~-G~~~ea~~vr~~m~~~gi~k~~g~ 1352 (1991)
+ +.+.....++..+....|++..|...++.+...+|. .+.|.+|+.+-... |+ .-++|..|. ++++-...-
T Consensus 325 k---~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGD---qg~vR~wlA-qav~APrdP 396 (531)
T COG3898 325 K---PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGD---QGKVRQWLA-QAVKAPRDP 396 (531)
T ss_pred C---ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCc---hHHHHHHHH-HHhcCCCCC
Confidence 4 235667777788888999999999999999999996 45688888886554 65 446777775 466655555
Q ss_pred EEEEEc
Q 040435 1353 SLVHVD 1358 (1991)
Q Consensus 1353 s~i~v~ 1358 (1991)
.|.--+
T Consensus 397 aW~adg 402 (531)
T COG3898 397 AWTADG 402 (531)
T ss_pred cccccC
Confidence 565444
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.76 Score=52.77 Aligned_cols=240 Identities=13% Similarity=0.016 Sum_probs=161.9
Q ss_pred hhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHh-ccc---hhhHHHHHHHHHHhCCCCchH
Q 040435 667 WSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACS-NLS---YIHGRLVHACLVKQGYESFTS 742 (1991)
Q Consensus 667 d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~-~~~---~~~a~~i~~~~lk~g~~~d~~ 742 (1991)
...|++-|..-...+.+-+.+++|..-+....... .||-. |-.--..+. +.| .-..+-+|+.+...- + .
T Consensus 65 t~~~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD--~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~l--g--n 137 (366)
T KOG2796|consen 65 TTDSLQLWTVRLALLVKLRLFQNAEMELEPFGNLD--QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYL--G--N 137 (366)
T ss_pred chhHHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC--Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHhc--C--C
Confidence 34677888888888888888888887766655432 11211 111111111 112 234667888776542 1 2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhcC--CCC--------hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 040435 743 IGNALMDFYMKWRFPDSAVAVFDDCI--CRD--------SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVL 812 (1991)
Q Consensus 743 ~~n~Li~~y~k~G~~~~A~~lfd~m~--~~d--------~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~ 812 (1991)
-+++|+..|.-...+++-.+.|+.-. +.. ...-+.++..+...|.+.-.+.++.+.++...+.+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 36788888876666666666665432 222 23346788888888999999999999999777778888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh------CCHHHHHHHHHhcCCC---CHHHHHHHHHHHH
Q 040435 813 VIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD------ADMECARKLFDEMCER---DVISWSVMIGGYV 883 (1991)
Q Consensus 813 lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak------g~~e~A~~vf~~m~~~---d~~syn~LI~a~~ 883 (1991)
+.+.-...||.+.|+..++.+.+..-..+....+.++.+-.+ .++..|.+.|+++++. |.+.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 888889999999999999988876555555555555544332 4789999999988664 4555555444455
Q ss_pred HcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 040435 884 QSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLK 916 (1991)
Q Consensus 884 ~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~ 916 (1991)
-.|+..+|++....|.. ..|...+-++++-
T Consensus 298 Ylg~l~DAiK~~e~~~~---~~P~~~l~es~~~ 327 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQ---QDPRHYLHESVLF 327 (366)
T ss_pred HHHHHHHHHHHHHHHhc---cCCccchhhhHHH
Confidence 56899999999999986 4566665554443
No 218
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.52 E-value=0.078 Score=51.58 Aligned_cols=80 Identities=15% Similarity=0.255 Sum_probs=36.5
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQ-PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA 1266 (1991)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|.++++. .+ ..|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555666666665543211 1223333345555555666666555554 11 2222 22222335555555555555
Q ss_pred HHHHHH
Q 040435 1267 IDLINQ 1272 (1991)
Q Consensus 1267 ~~l~~~ 1272 (1991)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555543
No 219
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.47 E-value=2 Score=52.29 Aligned_cols=124 Identities=10% Similarity=0.124 Sum_probs=56.8
Q ss_pred HHHHHHhc-CCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHH-HH
Q 040435 1151 VVDMYAKC-GAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-----PNAV-TT 1214 (1991)
Q Consensus 1151 LI~~y~k~-G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-----Pd~~-T~ 1214 (1991)
+..+|.+. |+++.|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-.. .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445554 566666665554432 11 123445556666677777777777766543221 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC--HHHHHHHHHHHHH--cCCHHHHHHHHHHCc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQD-HGVEPA--LEHYSCMVDMLAR--AGELDIAIDLINQMP 1274 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~-~gi~P~--~~~y~~Li~~l~r--~G~~eeA~~l~~~m~ 1274 (1991)
...+-.+...|+...|.+.++..... .++..+ ......|++++-. ...+++|+.-|+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22223444566666666666665321 112222 1233344444432 234556666666554
No 220
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.46 E-value=18 Score=45.21 Aligned_cols=445 Identities=11% Similarity=0.026 Sum_probs=217.7
Q ss_pred cCChHHHHHHHHHHHHhCCCC-----chHHHHHHHHHHhhCCHHHHHHHHHhcCCC-CHHHHHHHHHHH--HHcCChHHH
Q 040435 820 LGAYYEGLQVHGYIIRSGLWA-----VHSVQNSVLSMYVDADMECARKLFDEMCER-DVISWSVMIGGY--VQSAEAFSG 891 (1991)
Q Consensus 820 ~g~~~~a~~l~~~~~k~G~~~-----d~~v~naLi~~yakg~~e~A~~vf~~m~~~-d~~syn~LI~a~--~~~G~~~eA 891 (1991)
.++..++..+|..+.+..-.. .....+.++++|--.+++..........+. ....|-.+..+. -+.+.+.+|
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ka 98 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKA 98 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHH
Confidence 344555555555444332111 123345566666655554444444433211 012233333322 345666666
Q ss_pred HHHHHHHHhCC-CC------------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHH
Q 040435 892 LRLFRQMVSGF-KN------------EPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLG----CDLFVGNSLIDMYA 954 (1991)
Q Consensus 892 l~lf~~M~~~~-gv------------~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~----pd~~v~naLI~~y~ 954 (1991)
++.+..-..+- +- -+|..-=+..+..+...|.+.+|+.++..++..=++ -+..+|+.++-+++
T Consensus 99 l~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 99 LQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 66665544320 01 112222234555667788888888888777665443 67888888888887
Q ss_pred hcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC--ChhhHHHHH
Q 040435 955 KCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFV--HPMECKSVH 1032 (1991)
Q Consensus 955 k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g--~~~~a~~i~ 1032 (1991)
+.=-++. -+.+...=..-|--||..|.+.=..-+ .-.-+.+.|....+..++....-.. .+.--.+++
T Consensus 179 rSYfLEl----~e~~s~dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 179 RSYFLEL----KESMSSDLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHH----HHhcccccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 6532221 112221112235555555544311111 1111123344444444444333211 112223333
Q ss_pred HHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHHhcC--------CCchhhhhHHHHhhhhcCChHHHHHHHHHHHH
Q 040435 1033 CVILRRAFESN-ELVLNSLIDGYSKCHLVELAWKLFNDVK--------KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1033 ~~~~~~g~~~d-~~v~naLI~~y~k~G~l~~A~~lf~~m~--------~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~ 1103 (1991)
..-.+.-+.|+ .-+...|+..+.+ +.+++..+-+.+. +.=+.++..++...++.++..+|-+.+.-+.-
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333333343 2233344444444 3344433333322 23455777888888888888888877765543
Q ss_pred CCCCCCHHHHHHH-------HHHHh-h---ccChHHHHHHHHHHHHhccccchhHHHHHH---HHHHhcCC-HHHHHHHH
Q 040435 1104 AQEKPNAITIINL-------LEACS-V---ATELSSSKWAHGIAIRRCLAEEVAVGTAVV---DMYAKCGA-IEASRKAF 1168 (1991)
Q Consensus 1104 ~Gv~Pd~~T~~~l-------L~a~a-~---~g~le~a~~i~~~~~k~g~~~d~~v~naLI---~~y~k~G~-~e~A~~lf 1168 (1991)
+.|+...-.-+ -+..+ . ..++..-..++..+....++... ....|+ .-|-+.|. -++|.+++
T Consensus 327 --ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 --LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred --cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 23433211111 11111 0 11111112223333222222111 111122 22344554 77888888
Q ss_pred HhccC---CCHhHHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHH--HHhcCCHHHHHH
Q 040435 1169 DQISR---KNIVSWSAMV----AAYGMN---GLAHEALALVAEMKLGGLQPNAVT----TLSVLSA--CSHGGLVEEGLS 1232 (1991)
Q Consensus 1169 ~~m~~---~d~~s~n~LI----~ay~~~---G~~~eAl~lf~eM~~~Gi~Pd~~T----~~~LL~a--c~~~G~~e~A~~ 1232 (1991)
+.+.+ -|..+-|... .+|.+. ..+.+-+.+-+-..+.|+.|-.+. -+.|-.| +...|++.++.-
T Consensus 404 k~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ 483 (549)
T PF07079_consen 404 KLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL 483 (549)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 87764 3554444332 233332 123344444444556787774432 3333333 346788888887
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1233 FFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1233 i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+-.-+.+ +.|++.+|..+.-.+.-..+++||.+++.++| |+..+|++
T Consensus 484 ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP----~n~~~~ds 530 (549)
T PF07079_consen 484 YSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP----PNERMRDS 530 (549)
T ss_pred HHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC----CchhhHHH
Confidence 7666644 89999999998888888899999999999886 45555554
No 221
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=94.44 E-value=0.62 Score=58.93 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=86.1
Q ss_pred CCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh--ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCHhH
Q 040435 1105 QEKPNAITIINLLEACSVATELSSSKWAHGIAIRR--CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----KNIVS 1178 (1991)
Q Consensus 1105 Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~--g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~d~~s 1178 (1991)
+...+...+..+++.+....+++.++.++-..... ....-..+..++|..|.+.|..+.|..++..=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44557777777888888877777777766665554 2222234445788888888888888877765443 77888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
+|.||..+.+.|++..|.++..+|..++...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888887777777777777777777655
No 222
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=94.37 E-value=0.26 Score=55.72 Aligned_cols=97 Identities=16% Similarity=0.299 Sum_probs=74.8
Q ss_pred HHHHHhc--cCCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 040435 1165 RKAFDQI--SRKNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG------------- 1224 (1991)
Q Consensus 1165 ~~lf~~m--~~~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~------------- 1224 (1991)
...|+.. ..++-.+|..+|..|.+. |..+=...-++.|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556555 457777888888887754 55666666788888889999999999998876432
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 040435 1225 ---GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1225 ---G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~ 1262 (1991)
.+.+-|++++++| +.+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2346789999999 678999999999999999988775
No 223
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=94.36 E-value=0.012 Score=65.46 Aligned_cols=97 Identities=25% Similarity=0.495 Sum_probs=0.0
Q ss_pred HHHHhhCcCCCCCCCCCHHHHHHHHHHHHh-hccc-cc----CChhHHhhHhhhccccccCcCCCcceEEEeecccCCcc
Q 040435 1442 AKIESLCPSISGNVCCTETQFETLRAQVQQ-AIPF-LV----GCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVNGNL 1515 (1991)
Q Consensus 1442 ~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~-~~~~-~~----~CpaC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~ 1515 (1991)
..|...|..|....||+.++...+...... +..+ .. -=|.|..-|.++.|-+-|||++..|.. .....
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~~~------~~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHWQA------EDRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccccc------CCcCC
Confidence 356668999999999999999999888763 2221 11 247999999999999999999999921 11122
Q ss_pred eEEEEEEEEchhhhHHHhhcCcCCCCCCCCh
Q 040435 1516 TVDGIDYYVTSTFGEELYNSCKDVKFGTMNT 1546 (1991)
Q Consensus 1516 ~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~ 1546 (1991)
.+..+- |=++|=+.+|+.||+..+...+-
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~~ 118 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSNW 118 (167)
T ss_dssp -------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCcc
Confidence 355455 88999999999999998766554
No 224
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=94.32 E-value=0.44 Score=58.38 Aligned_cols=107 Identities=15% Similarity=0.229 Sum_probs=63.8
Q ss_pred CCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC--eeEeeccchhhhccccccccCCCccccCCC
Q 040435 476 PKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM--VNGAVETCKESFHRFDKYLNFSNPLISENF 553 (1991)
Q Consensus 476 ~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~--~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~ 553 (1991)
+..|++..++|=.+-. .|+.+.+.|||+|.|+.+--- .+.+..+ ..-+++- +...+ ..
T Consensus 179 p~~WaKlpaLR~aM~~-~PeaEWiWWLDsDALImNmsf---elPlery~~~NlVihg-------~~~~l---------~~ 238 (429)
T PLN03182 179 AGFWAKLPLLRKLMLA-HPEVEWIWWMDSDALFTDMTF---EIPLEKYEGYNLVIHG-------WDELV---------YD 238 (429)
T ss_pred CcchhHHHHHHHHHHH-CCCceEEEEecCCceeecCCC---CCCHhHcCCcCeeecc-------chhhh---------ee
Confidence 5678888888766543 688999999999999987322 2232211 0111110 00000 11
Q ss_pred CCCCcccccceeEeehHHHHHhhHHHHHHHHHHh-----------------chhccccccCCCCchhhhh
Q 040435 554 SPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDA-----------------NEDRTLWKLGTLPPGLITF 606 (1991)
Q Consensus 554 ~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~-----------------~~~~~~~~~~dqd~~n~~f 606 (1991)
..+-.|.|+|++||....|--.-+.. |... ..++..+...||.++-.++
T Consensus 239 ~kdW~GLNtGsFLIRNcqWSldlLDa----Wa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl 304 (429)
T PLN03182 239 QKSWIGLNTGSFLIRNCQWSLDLLDA----WAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLL 304 (429)
T ss_pred ccccCccceeeEEEEcCHHHHHHHHH----HHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHH
Confidence 12335899999999999998744432 3222 2244456788998875543
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=94.31 E-value=0.45 Score=51.84 Aligned_cols=91 Identities=10% Similarity=-0.054 Sum_probs=77.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
...-+-..|++++|..+|.-+..-..-+..-|..|..+|...++++.|...|..+..++++||.+++..+..|...|+-+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 34445678999999999987754334577789999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 040435 1333 ESSGTRLLAKE 1343 (1991)
Q Consensus 1333 ea~~vr~~m~~ 1343 (1991)
.|........+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99887765544
No 226
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.21 E-value=11 Score=41.87 Aligned_cols=191 Identities=16% Similarity=0.128 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcc-----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQIS-----RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~-----~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3444555666666677776666666543 23344555566666666777777777777765433331 11222222
Q ss_pred -HHHhcCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-CHHHHHHHHHHHHH
Q 040435 1220 -ACSHGGLVEEGLSFFNSMVQDHGVEP----ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA-TASAWGALLSACRS 1293 (1991)
Q Consensus 1220 -ac~~~G~~e~A~~i~~~M~~~~gi~P----~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-d~~~~~~Ll~a~~~ 1293 (1991)
++...|.++.|...+..... ..| ....+......+...++.++|...+.++....+. ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 56677777777777777633 333 2333444444466677777887777777654344 35677777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.++.+.|...+.++++..|.....+..++..+...|.++++.....
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 7777888888888877777755556666666666666666665444
No 227
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.12 E-value=2.6 Score=51.24 Aligned_cols=116 Identities=17% Similarity=0.221 Sum_probs=55.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG-GLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDML 1257 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~-G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l 1257 (1991)
+..|...|++..|-..+.++- ..|... |++++|.++|++..+-+...-. ...+.-+..++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 445555555555544444432 233344 5666666666655443222222 23445556667
Q ss_pred HHcCCHHHHHHHHHHCccC------CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1258 ARAGELDIAIDLINQMPDN------LKATAS-AWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~------~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+.|++++|.+++++.... .+.+.. .+-..+-.+...||...|.+.+++..+.+|.
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777777665331 011111 1122222334456777777777777666664
No 228
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=94.06 E-value=0.5 Score=59.72 Aligned_cols=120 Identities=16% Similarity=0.075 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----Cchhh
Q 040435 1004 VNEVDEITLVNILQICKCFVHPMECKSVHCVILRR--AFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVL 1077 (1991)
Q Consensus 1004 Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~--g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~s 1077 (1991)
+...+...+..++..+....+++.++.++-..... ....-..+..++|+.|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777777888888888888777776665554 2222233456888888888888888888876554 88888
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVA 1123 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~ 1123 (1991)
+|.||..+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888998999999988988888888887778888887777777765
No 229
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=2 Score=49.56 Aligned_cols=171 Identities=5% Similarity=-0.128 Sum_probs=117.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC----------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR----------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV 1217 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~----------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L 1217 (1991)
+++|+..|.-..-+++-...|+.-.. +-...-++|+..+.-+|.+.-.+.++++.++..-+-+......|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566666555555555555543332 12234556777777778888889999999987656677777788
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGV----EPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi----~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
.+.-...|+++.|..+|+...+..|. .-..-....+...|.-+.++.+|...+.+++...+.++..-+.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 88888999999999999977554332 22222333334456667889999999999987545566666555555556
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.|+...|.+..+.+++..|.....-
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhccCCccchhh
Confidence 7899999999999999999764433
No 230
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=94.05 E-value=0.7 Score=46.93 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHhHHhcCCCCCHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPNAVTTLSVLSACSHGGL--------VEEGLSFFNSMVQDHGVEPALE 1248 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~~T~~~LL~ac~~~G~--------~e~A~~i~~~M~~~~gi~P~~~ 1248 (1991)
+-...|..+...+++.....+|+.+++.|+ -|+..+|+.+|.+-.+... +-+.+.+++.|+. .+++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 445566666777999999999999999999 8999999999988765432 3456777888875 47888888
Q ss_pred HHHHHHHHHHH
Q 040435 1249 HYSCMVDMLAR 1259 (1991)
Q Consensus 1249 ~y~~Li~~l~r 1259 (1991)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877764
No 231
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=93.92 E-value=0.49 Score=48.00 Aligned_cols=82 Identities=13% Similarity=0.035 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHhCCCCchHH
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGF-EPNNSILVLVIQACRCLG--------AYYEGLQVHGYIIRSGLWAVHSV 844 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi-~Pd~~ty~~lL~a~~~~g--------~~~~a~~l~~~~~k~G~~~d~~v 844 (1991)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++.. .+-....++..++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566667777999999999999999999 899999999998887653 12334566677777777777777
Q ss_pred HHHHHHHHhhC
Q 040435 845 QNSVLSMYVDA 855 (1991)
Q Consensus 845 ~naLi~~yakg 855 (1991)
|+.++..+.+|
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 77777666554
No 232
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.88 E-value=0.36 Score=58.52 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR-AGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r-~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
.+|..++..+.+.+.++.|+.+|.+..+. -.-+...|.....+-.+ .++.+.|.++|+...+.++.+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889998998999999999999643 22234556666666555 4566669999999988778899999999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+...|+.+.|..++++++..-|.+. ..|......=...|..+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766654 35666677777789999998988877654
No 233
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=93.88 E-value=0.52 Score=53.38 Aligned_cols=117 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHH-----hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHH
Q 040435 805 PNNSILVLVIQACR-----CLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMI 879 (1991)
Q Consensus 805 Pd~~ty~~lL~a~~-----~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI 879 (1991)
-|..+|..++..+. +.|.++.....+..|.+.|+..|..+|+.||+.+=+|.+- -..+|+.+-.
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcc-cccHHHHHhc----------
Confidence 45556666665554 3467788888888899999999999999999988776433 2233333210
Q ss_pred HHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHH
Q 040435 880 GGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDL-TMGRMVHGLVIY 936 (1991)
Q Consensus 880 ~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~-~~a~~l~~~m~k 936 (1991)
-| -.+-+-|++++++|... |+.||..|+..|+..+++.+.. ...+++.-+|.+
T Consensus 114 -hy--p~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 114 -HY--PRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred -cC--cHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11 12456789999999987 9999999999999999877653 345555555554
No 234
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.81 E-value=0.14 Score=48.09 Aligned_cols=55 Identities=16% Similarity=0.057 Sum_probs=49.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.......-
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999998766443
No 235
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=93.78 E-value=5.8 Score=47.07 Aligned_cols=171 Identities=10% Similarity=0.004 Sum_probs=103.8
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CCH-hH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c
Q 040435 1153 DMYAKCGAIEASRKAFDQISR--KNI-VS---WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH--G 1224 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~--~d~-~s---~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~--~ 1224 (1991)
..+.+.|++++|.+.|+.+.. |+. .. .-.++.+|.+.+++++|+..|++..+....-..+-+...+.+.++ .
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 344567889999998888865 322 11 223556777888899999999888874322222334444444332 1
Q ss_pred C---------------C---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1225 G---------------L---VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1225 G---------------~---~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+ + ..+|.+.|+.+++ .|-...-..+|...+..+..++. ..-+ .
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la--~~e~-~ 180 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLA--KYEL-S 180 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHH--HHHH-H
Confidence 0 1 1233344444443 33333334555554444432100 0111 3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...-|.+.|.+.-|..-++.+++.-|+. +.+...+..+|...|+-++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3444778899999999999999988875 4556778899999999999998877654
No 236
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=93.66 E-value=0.12 Score=47.69 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=45.7
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
...|+++.|...++++++.+|+++.....++.+|...|++++|..+...+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999998877443
No 237
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.62 E-value=1.3 Score=46.34 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=68.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHH
Q 040435 1182 MVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1182 LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~ 1258 (1991)
+..++-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876653 3566777888999999999999998877532211 1222333445778
Q ss_pred HcCCHHHHHHHHHHCc
Q 040435 1259 RAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~ 1274 (1991)
..|+.+||++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8999999998876553
No 238
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=1 Score=54.97 Aligned_cols=152 Identities=11% Similarity=0.085 Sum_probs=98.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHhHHhcCCCCCHH-------------H
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS--ACSHGGLVEEGLSFFNSMVQDHGVEPALE-------------H 1249 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~--ac~~~G~~e~A~~i~~~M~~~~gi~P~~~-------------~ 1249 (1991)
++...|++++|.+.--..++.. +. ..+..+++ ++-..++.+.|...|++.+. +.|+-. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 4555666666666555544321 11 11122222 22345566666666665543 444421 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCcc----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPD----NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~----~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+..=.+...+.|++.+|.+.+.+... +.++++..|.....+..+.|+.++|+.--+++++++|.-.-+|..-++.|
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 22223456678899999999888754 35666777877777888899999999999999999998888888889999
Q ss_pred HhCCCchhHHH-HHHHHH
Q 040435 1326 AAGGLWVESSG-TRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~-vr~~m~ 1342 (1991)
...++|++|.+ +.+.|+
T Consensus 332 l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 99999999765 334443
No 239
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.57 E-value=0.53 Score=49.16 Aligned_cols=84 Identities=18% Similarity=-0.011 Sum_probs=53.4
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLSACRSYGNTELGAGATSRILELEAQ---NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~---~~~~yvlL~~lya~ 1327 (1991)
..++-..|+.++|+.++++......++ ...+-.+.++++..|+.++|..++++.++..|+ +....++++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 345556667777777776665421111 235556666777777777777777777776666 55666666777777
Q ss_pred CCCchhHHHH
Q 040435 1328 GGLWVESSGT 1337 (1991)
Q Consensus 1328 ~G~~~ea~~v 1337 (1991)
.|++++|..+
T Consensus 88 ~gr~~eAl~~ 97 (120)
T PF12688_consen 88 LGRPKEALEW 97 (120)
T ss_pred CCCHHHHHHH
Confidence 7777776653
No 240
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.38 E-value=1.1 Score=48.80 Aligned_cols=86 Identities=8% Similarity=-0.037 Sum_probs=38.7
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|.++|+-+.. +.|. ..-|-.|.-.+-..|++++|++.+..+....+.|+..+-.+..++...|+.+.|+
T Consensus 47 ~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444432 3332 2333444444444444444444444443322334444444444445555555555
Q ss_pred HHHHHHHhcC
Q 040435 1302 GATSRILELE 1311 (1991)
Q Consensus 1302 ~~~e~llel~ 1311 (1991)
+.|+.+++..
T Consensus 124 ~aF~~Ai~~~ 133 (157)
T PRK15363 124 KALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHh
Confidence 5555444443
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.27 E-value=0.13 Score=43.32 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHH
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASS 1323 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ 1323 (1991)
.+|..|..++...|+.++|+++++++++.+|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 478889999999999999999999999999999998887764
No 242
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.21 E-value=0.9 Score=49.15 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEP--ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P--~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
....|+.+.+.+.++.+..-+.-.+ +... ..........++++- ..+...++..+...|+.+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHH
Confidence 3456777888887777765443211 1111 122333333444332 246677888888999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH-----HHHcCCcccC
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL-----AKERGVKVVA 1350 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~-----m~~~gi~k~~ 1350 (1991)
.|...+++++..+|-+...|..+..+|...|+..+|.++... .++.|+.|.|
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999986543 3467887654
No 243
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.13 E-value=0.59 Score=55.90 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALL 1288 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll 1288 (1991)
.|...+......|++++|...|+.+++.+--.+ ....+--+..+|...|++++|...|+.+....+. ...+|..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355544444556788888888888776432221 1245666777788888888888888777653222 244555556
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..+...|+.+.|...++++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 6666778888888888888888887654
No 244
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.92 E-value=7.4 Score=49.81 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--CchhhhhHHHHhhhhcC
Q 040435 1012 LVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVVLWSTMIAGFTLCG 1089 (1991)
Q Consensus 1012 ~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~syn~LI~~y~~~g 1089 (1991)
...+-.-+.+...+..|.++|..|-.. .+++.+....+++++|..+-++.++ +|+ |-.-..-++...
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDV--YMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccc--cchHHHHhhhhh
Confidence 333333344455555666666554322 3567778888889999888888887 343 333344455666
Q ss_pred ChHHHHHHHH
Q 040435 1090 RPREAIAVFQ 1099 (1991)
Q Consensus 1090 ~~eeAl~lf~ 1099 (1991)
+++||.+.|.
T Consensus 819 rFeEAqkAfh 828 (1081)
T KOG1538|consen 819 RFEEAQKAFH 828 (1081)
T ss_pred hHHHHHHHHH
Confidence 6666655443
No 245
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.91 E-value=9.7 Score=45.19 Aligned_cols=54 Identities=9% Similarity=-0.092 Sum_probs=37.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--Cchh-h---hhHHHHhhhhcCChHHHHHHHHHHHHC
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKK--PDVV-L---WSTMIAGFTLCGRPREAIAVFQEMNQA 1104 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~--~d~~-s---yn~LI~~y~~~g~~eeAl~lf~~M~~~ 1104 (1991)
...+.+.|++++|.+.|+.+.. |+.. . .-.+..+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3445567888888888888865 3321 1 123456777888888888888888764
No 246
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.88 E-value=0.97 Score=54.06 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcC
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G 1261 (1991)
.+.|++++|+..|+.+.+. -|+. ..+.-+..++...|++++|...|+.+++.+.-.|. ...+-.+...+.+.|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555442 2322 23333444445555555555555555443322221 233333444444555
Q ss_pred CHHHHHHHHHHCcc
Q 040435 1262 ELDIAIDLINQMPD 1275 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~ 1275 (1991)
+.++|.+.+++..+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555554443
No 247
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.58 E-value=20 Score=39.82 Aligned_cols=197 Identities=17% Similarity=0.073 Sum_probs=130.2
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHh-ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC-HhHHHHHHH-HHH
Q 040435 1113 IINLLEACSVATELSSSKWAHGIAIRR-CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN-IVSWSAMVA-AYG 1187 (1991)
Q Consensus 1113 ~~~lL~a~a~~g~le~a~~i~~~~~k~-g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d-~~s~n~LI~-ay~ 1187 (1991)
+......+...+.+..+.......... ........+..+...+...+....+...+..... ++ ...+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333334444444444444444433332 2223334445555566666777788888777664 22 122333333 688
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 040435 1188 MNGLAHEALALVAEMKLGGLQP----NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~P----d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~ 1262 (1991)
..|+.++|...+++... ..| ....+......+...+..+++...+..+.+. ... ....+..+...+...|.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHccc
Confidence 89999999999999865 333 3334444444567788999999999988763 222 36778888888999999
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
+++|...+.......+.....+..+...+...++.+.+...+.+.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999999999887643333566677777777777799999999999999887
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.11 E-value=0.46 Score=59.50 Aligned_cols=63 Identities=16% Similarity=-0.046 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchhHHHHHH
Q 040435 1277 LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA---GYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.+.+...|..+..+|...|++++|...++++++++|+++. +|+.++.+|+..|+.++|.....
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456778888888888888888888888888888888874 48888888888888888886443
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=47 Score=44.20 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=82.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHH
Q 040435 1208 QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGAL 1287 (1991)
Q Consensus 1208 ~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~L 1287 (1991)
.-...|.+--+.-+...|...+|.++-.+. --|+...|-.-+.+|+..+++++-+++-++++. +.-|.-.
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F-----kipdKr~~wLk~~aLa~~~kweeLekfAkskks-----PIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF-----KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS-----PIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc-----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-----CCCchhH
Confidence 344445566666777888888888877655 247777888888888999999988888887762 3456667
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+|.+.|+..+|.+.+-++-. +.-...+|...|++.+|+.+-.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 8889999998888876655421 1256778888888888877654
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=91.91 E-value=6.5 Score=49.76 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=104.4
Q ss_pred hHH--HHHHHHHHHcC-----CHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHhH
Q 040435 1177 VSW--SAMVAAYGMNG-----LAHEALALVAEMK-LGGLQPNAVTTLSVLSACS----------HGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1177 ~s~--n~LI~ay~~~G-----~~~eAl~lf~eM~-~~Gi~Pd~~T~~~LL~ac~----------~~G~~e~A~~i~~~M~ 1238 (1991)
..| ..++.|....- ..+.|+.+|.+.. .+.+.|+-..-...+.-|. ......+|.+.-+..+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 55665554421 3567888888887 2235666443222332221 1223556667766665
Q ss_pred HhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1239 QDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1239 ~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
+ +.| |......+..+++-.|+++.|..+|++...-.+..+.+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5 566 566667777777778889999999998877444557788888888888999999999999999999987665
Q ss_pred HHHHHH--HHHhCCCchhHHHHHH
Q 040435 1318 YLLASS--MYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1318 yvlL~~--lya~~G~~~ea~~vr~ 1339 (1991)
-++-.. +|+..+. +++.++..
T Consensus 409 ~~~~~~~~~~~~~~~-~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNPL-KNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCch-hhhHHHHh
Confidence 554433 5666554 55555543
No 251
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.89 E-value=31 Score=48.06 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=99.1
Q ss_pred CCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHH
Q 040435 1058 HLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAI 1137 (1991)
Q Consensus 1058 G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~ 1137 (1991)
+++++|..-+.++. ...|.-.+.---++|.+.+|+.++ +|+...+.-+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 45556655555543 223444444444566666666664 67888887777776642 11
Q ss_pred HhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HH
Q 040435 1138 RRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVT--TL 1215 (1991)
Q Consensus 1138 k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T--~~ 1215 (1991)
+. ..++--.-+|.+||++++|.+. |...|++++|+.+-.+|.. .-|... -.
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 11 1122334589999999999664 4567889999998888752 223322 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
.|.+-+...+..-+|-++..+... . +.--+..|+++..+++|..+.....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d-----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----D-----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----C-----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 566777788888888777765533 2 3345667788888888888877664
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.12 E-value=1.3 Score=45.82 Aligned_cols=84 Identities=25% Similarity=0.242 Sum_probs=49.7
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc----hHHHHHHHHHHhCCCc
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS----AGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~----~~yvlL~~lya~~G~~ 1331 (1991)
+++..|++++|++.|.+...-.+..+++|+.-..+++.+|+.+.|..-+++++++..+.. .+|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455566666666666665543344566666666666666666666666666666543321 2355666666666666
Q ss_pred hhHHHHHH
Q 040435 1332 VESSGTRL 1339 (1991)
Q Consensus 1332 ~ea~~vr~ 1339 (1991)
++|..=..
T Consensus 132 d~AR~DFe 139 (175)
T KOG4555|consen 132 DAARADFE 139 (175)
T ss_pred HHHHHhHH
Confidence 55554333
No 253
>PRK11906 transcriptional regulator; Provisional
Probab=90.71 E-value=2 Score=54.06 Aligned_cols=124 Identities=8% Similarity=0.022 Sum_probs=96.1
Q ss_pred HHHHHHHHhc--C---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHCccCCCC
Q 040435 1215 LSVLSACSHG--G---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLAR---------AGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1215 ~~LL~ac~~~--G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r---------~G~~eeA~~l~~~m~~~~~p 1279 (1991)
...+.+..+. + ..++|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++..+..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455555442 2 457788899988754458886 4555555443322 23456788888888876677
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|+.+...+..+....|+.+.|...++++++++|+.+.++...+.+...+|+.++|...-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999998899999999999999999999999999999999999999999987643
No 254
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=90.63 E-value=22 Score=39.43 Aligned_cols=127 Identities=12% Similarity=-0.006 Sum_probs=89.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCM 1253 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~L 1253 (1991)
|++..--.|..++...|+..||...|++...--..-|......+..+....++...|...++.+.+..--.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 56666667888899999999999999998764456677888888888889999999999998876532111123455566
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
...|...|+.++|+.-|+.... .-|+...-.-...-..++|+..++.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~-~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAIS-YYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHH-hCCCHHHHHHHHHHHHHhcchhHHH
Confidence 7788889999999988888765 3445443333333345566544444
No 255
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=90.26 E-value=1.8 Score=45.65 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHc
Q 040435 1242 GVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSY 1294 (1991)
Q Consensus 1242 gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~ 1294 (1991)
.+.|+.....+++.+|+..|++..|+++++...+. ++-+...|..|+.=+...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777777777766542 444567777777755443
No 256
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=90.11 E-value=2.5 Score=44.62 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR 1259 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r 1259 (1991)
...|+..+..+++.+++..|++..|+++.+...+.|++.-+...|..|+.-...
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999988888899888864443
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=89.88 E-value=59 Score=40.16 Aligned_cols=296 Identities=13% Similarity=-0.001 Sum_probs=155.0
Q ss_pred HHHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChHHHHHHHHHHHHhCCCCchH---HHH
Q 040435 774 SWNIMIQGHL--DHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACR--CLGAYYEGLQVHGYIIRSGLWAVHS---VQN 846 (1991)
Q Consensus 774 s~n~LI~a~~--~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~--~~g~~~~a~~l~~~~~k~G~~~d~~---v~n 846 (1991)
-|.+|-.|+. ..|+-..|.++-.+-.. -+.-|...+..||.+-+ -.|+.+.|++-|+.|+.. |... +..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 4556655554 35566666555544321 13456666666766544 447888888888877642 1111 111
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHH--HHHHHHHHHHc-
Q 040435 847 SVLSMYVDADMECARKLFDEMCE--R-DVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQ--SLVSVLKACTN- 920 (1991)
Q Consensus 847 aLi~~yakg~~e~A~~vf~~m~~--~-d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~--T~~~lL~a~~~- 920 (1991)
..|..-..|+.+.|++.-+...+ | =.-.|.+.+...+..|+++.|+++++.-+...-+.++.. .-..||.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 11111112777777776665532 2 235677788888888888888888887765444555543 22333333221
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040435 921 --LRDLTMGRMVHGLVIYRGLGCDLFV-GNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLL 997 (1991)
Q Consensus 921 --~g~~~~a~~l~~~m~k~g~~pd~~v-~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf 997 (1991)
..+...++..-.+..| +.||..- .-.-...|.+.|++.++-.+++.+=+.....--..+..+.+.|+ .++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 1233344443333333 3444221 12233567788888888888777643222111122223344444 333333
Q ss_pred HHHhc-CCCCCC-HHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh-cCCHHHHHHHHHhcCC-C
Q 040435 998 YSMGK-GVNEVD-EITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK-CHLVELAWKLFNDVKK-P 1073 (1991)
Q Consensus 998 ~~M~~-~Gi~Pd-~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k-~G~l~~A~~lf~~m~~-~ 1073 (1991)
++... ...+|| ......+..+....|++..++.--+.+.+ ..|....|-.|.+.-.- .|+-.+++..+-+-.+ |
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 33211 123444 33445555666666777666655444443 34566666666665543 4888888777766543 3
Q ss_pred chhhhh
Q 040435 1074 DVVLWS 1079 (1991)
Q Consensus 1074 d~~syn 1079 (1991)
-...|+
T Consensus 394 rdPaW~ 399 (531)
T COG3898 394 RDPAWT 399 (531)
T ss_pred CCCccc
Confidence 333443
No 258
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.71 E-value=1.7 Score=50.54 Aligned_cols=112 Identities=19% Similarity=0.215 Sum_probs=84.9
Q ss_pred HHHHHHHHhcc--CCCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--------
Q 040435 1162 EASRKAFDQIS--RKNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL-------- 1226 (1991)
Q Consensus 1162 e~A~~lf~~m~--~~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~-------- 1226 (1991)
-..+..|.... ++|-.+|-+++..+..+ +..+=....++.|.+-|+.-|..+|..||..+-+...
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 67888999999888765 4566666678899999999999999999987654432
Q ss_pred --------HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHCc
Q 040435 1227 --------VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGEL-DIAIDLINQMP 1274 (1991)
Q Consensus 1227 --------~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~-eeA~~l~~~m~ 1274 (1991)
-+-|+.++++| +.+|+.||.++-..|+.+++|.|.. .+..+++--|+
T Consensus 131 ~F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 24478899999 6789999999999999999998853 34444444444
No 259
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=89.68 E-value=20 Score=50.33 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=73.6
Q ss_pred HHHHHHHH-HhchhhhccchHHHHH--HHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEE
Q 040435 1719 GYMLSFYR-TYGRWVAANPAFVLCM--SLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLI 1795 (1991)
Q Consensus 1719 ~~l~~~F~-~~G~~va~~P~~~i~~--~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvi 1795 (1991)
..+.++|. .||.++.+.|..++++ -++..++...|...++..-||.+| .|.+|...+=-+..+++|.+.+=.-.|+
T Consensus 418 ~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~ 496 (798)
T PF02460_consen 418 PSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVV 496 (798)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEE
Confidence 34555555 5899999887665433 334444555789999999999855 7889998887777778887776556666
Q ss_pred EEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1796 LATLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1796 i~~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
+.. .+++-+++..+++.++.+.+.++.
T Consensus 497 v~~--------~~d~~~~~~~~~l~~lv~~fe~~~ 523 (798)
T PF02460_consen 497 VNN--------PPDYSDPENQDRLNSLVQEFENSP 523 (798)
T ss_pred ecC--------CCCccchHHHHHHHHHHHHHhccc
Confidence 664 235666888888888888887664
No 260
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.56 E-value=82 Score=42.27 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 040435 945 VGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC 1021 (1991)
Q Consensus 945 v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~ 1021 (1991)
++..+|+.+.-.|++++|-.+.-.|...+..-|---+.-++..++......+ |....-+.+...|..+|..+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 4455666666667777777777777666666676666666666554433222 2222222344445555555443
No 261
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.24 E-value=16 Score=42.04 Aligned_cols=170 Identities=15% Similarity=0.063 Sum_probs=89.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhc
Q 040435 1153 DMYAKCGAIEASRKAFDQISR--KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHG 1224 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~--~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~ 1224 (1991)
..+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...+++.++. -|+. .-+...+.+.+..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence 344556777778777777764 22 234455666777777777777777776653 2322 2233333332221
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
....... . ...++. ...+..++.-|=......+|...+..+...+ ..---.+..-|.+.|.+..
T Consensus 91 ~~~~~~~-----~---~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGIL-----R---SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---HHHHHHHHHHHHCTT-HHH
T ss_pred HhCccch-----h---cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcccHHH
Confidence 1111100 0 000000 1233444444444555555555555443210 0111123455778899999
Q ss_pred HHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchhHH
Q 040435 1300 GAGATSRILELEAQNSA---GYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~ea~ 1335 (1991)
|..-++.+++.-|+.+. +...+...|.+.|..+.+.
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999998754 4567788999999987443
No 262
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.18 E-value=77 Score=40.55 Aligned_cols=238 Identities=13% Similarity=0.174 Sum_probs=136.6
Q ss_pred HHHHHhcCC--CchhhhhHHHHhhhhcC------ChHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHHhhccChHHHHHHH
Q 040435 1064 WKLFNDVKK--PDVVLWSTMIAGFTLCG------RPREAIAVFQEMNQ-AQEKPNAI-TIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1064 ~~lf~~m~~--~d~~syn~LI~~y~~~g------~~eeAl~lf~~M~~-~Gv~Pd~~-T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
..+|+...+ +....|+..|..|...- .....+.+|+.... .+..++.. .|..+.-..... ..++..-
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~---~~~r~~a 378 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTL---NEAREVA 378 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhcc---chHhHHH
Confidence 356665554 55666777776665432 33444555555443 33444433 333333332222 2233333
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHh----cc----CCCHhHHHHHHHHHHHcCC-HHH-HHHHHHHHH
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQ----IS----RKNIVSWSAMVAAYGMNGL-AHE-ALALVAEMK 1203 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~----m~----~~d~~s~n~LI~ay~~~G~-~~e-Al~lf~eM~ 1203 (1991)
..+..-++..+...+-.-+....+... ++.-+|.+ .. .+-..+|++-+ .|. .+. .+.++-...
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 333334455555555544444432221 33333333 22 23445666655 121 111 122222222
Q ss_pred HCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHCccCCCC
Q 040435 1204 LGGLQPNAVTTL-SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDM---LARAGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1204 ~~Gi~Pd~~T~~-~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~---l~r~G~~eeA~~l~~~m~~~~~p 1279 (1991)
..-..|+..|+. .++.-+-..|-+++|...+..+... -.|+...|.-||.. ...+| +.-+.++++.|...+-.
T Consensus 452 ~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l--pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~ 528 (568)
T KOG2396|consen 452 LSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL--PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGA 528 (568)
T ss_pred HHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC--CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCC
Confidence 223467777764 5667777889999999999988652 23367778888764 33445 88889999998765557
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCC
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILE-LEAQN 1314 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-l~P~~ 1314 (1991)
|+..|...+.--..+|..+-+-.++.++++ ++|+.
T Consensus 529 d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~~ 564 (568)
T KOG2396|consen 529 DSDLWMDYMKEELPLGRPENCGQIYWRAMKTLQGES 564 (568)
T ss_pred ChHHHHHHHHhhccCCCcccccHHHHHHHHhhChhh
Confidence 889999999988899999999999988877 56653
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.12 E-value=3.7 Score=50.67 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
..+..|.-.|.+.+++.+|++.-++..+..++|......=..||...|+++.|+..++++++++|+|-.+..-|..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677788899999999999999988876677888888899999999999999999999999999999888888877776
Q ss_pred CCCchhHH-HHHHHH
Q 040435 1328 GGLWVESS-GTRLLA 1341 (1991)
Q Consensus 1328 ~G~~~ea~-~vr~~m 1341 (1991)
..+..+.. ++++.|
T Consensus 338 ~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 338 IREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHH
Confidence 66665553 455555
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.96 E-value=2.6 Score=54.23 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH
Q 040435 1187 GMNGLAHEALALVAE-MKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~e-M~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee 1265 (1991)
..+|++++++++.+. -.-..++ ..-...++.-+.+.|..+.|+++-..-.. -.++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHH
Confidence 345666666555541 1111111 23355566666677777777666543221 2455567777777
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
|.++.++.. +...|..|......+||.+.|+++++++- .+-.|+-+|...|+-+.
T Consensus 337 A~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 337 ALEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 777766553 55677777777777777777777776642 24456666777776433
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.87 E-value=20 Score=45.64 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACR 1292 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~ 1292 (1991)
..+...+-+.|..++|.+.+++|.+++...-.......|+..|...+++.++..++.+..+..-|. ...|++.+-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556668899999999999998764332234567778999999999999999999886532232 345666555555
Q ss_pred HcCCh---------------hHHHHHHHHHHhcCCCCch
Q 040435 1293 SYGNT---------------ELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1293 ~~g~~---------------e~A~~~~e~llel~P~~~~ 1316 (1991)
.-|+. ..|.++..++++.+|..+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 44431 2356788899999997765
No 266
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.47 E-value=8.3 Score=46.12 Aligned_cols=105 Identities=17% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC---CHHHHHHHHHHCccCCCCCHHHH
Q 040435 1209 PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG---ELDIAIDLINQMPDNLKATASAW 1284 (1991)
Q Consensus 1209 Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~pd~~~~ 1284 (1991)
-|...|..|-.+|...|+.+.|...|....+ +.| +.+.+..+..++.... ...+|.++|+++....+.|..+.
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r---L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR---LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 3556677777777777777777777776654 444 3455555555544432 34567777777766545566666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.-|..++...|++.+|...++.|++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 66666777777777777777777777665543
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.09 E-value=11 Score=40.31 Aligned_cols=120 Identities=16% Similarity=0.279 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~ 1227 (1991)
+|..+...+....+...++.+.. .+....|.+|..|++.+ ..+.++.++. ..+......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 33444444444444444444332 12344555555555543 2333344332 12333444566777777777
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARA-GELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~-G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+++..++..+.. |...++.+... ++.+.|.+++.+-. +...|..++..|.
T Consensus 86 ~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-----~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-----NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-----CHHHHHHHHHHHH
Confidence 777777765521 22333444444 67777777777532 4567777776654
No 268
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=87.68 E-value=5 Score=48.91 Aligned_cols=96 Identities=11% Similarity=-0.008 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH---hcC-CCCCHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKL----GGL-QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ---DHG-VEPALE 1248 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi-~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~---~~g-i~P~~~ 1248 (1991)
.+..+..++.-.|+++.|.+.|+.-.. .|- .....+.-+|..+|.-...+++|+.++.+-+. +.+ ..-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344445555555555555555544321 111 11222344455555555566666666543221 101 122345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
.|-+|..++...|..+.|+.+.+.-
T Consensus 317 acwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5666667777777777777666544
No 269
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.49 E-value=1.1e+02 Score=40.22 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=125.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISRK---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
.+..+|..-++.-.+.|+.+.+..+|++..-| -...|-..+.-.-..|+.+-|-.++....+--++-...+-..--.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35667777888888899999999999988754 234566666555556888888777766554433333333222223
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHH---HHHHHCccCCCCCHHHHHHHHHH-----
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAI---DLINQMPDNLKATASAWGALLSA----- 1290 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~---~l~~~m~~~~~pd~~~~~~Ll~a----- 1290 (1991)
-+-..|+.+.|..+++.+.++ . |+. ..----+.+.-|.|..+.+. +++...... +-+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc-ccCcchhHHHHHHHHHHH
Confidence 356789999999999999876 4 763 33333456778889999888 555554432 2222233333222
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
+...++.+.|..++.++.+..|++-..|..+.++....+..
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 34567999999999999999999999999888887776643
No 270
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=87.47 E-value=1.3 Score=42.16 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDN---LK---AT-ASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd-~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.|..+...|.+.|++++|++.+++..+. .. |+ ..++..+...+...|+.+.|+..++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444555555555555544443220 11 11 33445555555555555555555555544
No 271
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=18 Score=44.85 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHHhccCCCHh-HHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HH----------H
Q 040435 1157 KCGAIEASRKAFDQISRKNIV-SWSAMVAA--YGMNGLAHEALALVAEMKLGGLQPNAVTTLSV---LS----------A 1220 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~~d~~-s~n~LI~a--y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L---L~----------a 1220 (1991)
-.|+.++|..+-..+.+-|.. .+-..+.+ +-..++.+.|...|++.+. ..||...-... .. -
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~ 258 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGND 258 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhh
Confidence 345555555554444443222 22222222 2234556666666666554 33544432221 11 1
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH-HHHHHHH--HHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS-AWGALLS--ACR 1292 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~-~~~~Ll~--a~~ 1292 (1991)
..+.|.+..|.+.+.+.+. +.|+ ...|........|.|++++|+.--++... -|+. ++.-|.. ++.
T Consensus 259 ~fk~G~y~~A~E~Yteal~---idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALN---IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhccchhHHHHHHHHhhc---CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHH
Confidence 2467889999999987753 6664 45677777788899999999998888764 2433 3333333 344
Q ss_pred HcCChhHHHHHHHHHHhcCCC
Q 040435 1293 SYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..++++.|++-++++++++.+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 567899999999999987765
No 272
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=87.22 E-value=3.1 Score=52.47 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT-A---SAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd-~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
...+..+..+|.+.|++++|+..+++..+ +.|+ . .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe-L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE-LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56677777788888888888888887665 3444 2 35888888888888888888888888886
No 273
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=86.81 E-value=3.3 Score=47.92 Aligned_cols=110 Identities=14% Similarity=0.009 Sum_probs=62.5
Q ss_pred CcchhhhHHHHhh-cccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccCCCCC
Q 040435 477 KYLSMLNHLRFYL-PEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISENFSP 555 (1991)
Q Consensus 477 ~~~s~~~y~Rl~i-p~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (1991)
+.+..++..|.-+ -+++..=--|||+|+|+|..+|..++++. .+.-+.+..|+.... ....
T Consensus 46 ~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~dp~~~~~~--~~~Di~~~~d~~~~~----------------~~~~ 107 (212)
T PF03407_consen 46 KAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRDPLPYFEN--PDADILFSSDGWDGT----------------NSDR 107 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecCcHHhhcc--CCCceEEecCCCccc----------------chhh
Confidence 3445556666543 33444334699999999999999999921 233233333421110 0111
Q ss_pred CCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhcccc
Q 040435 556 NACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLT 610 (1991)
Q Consensus 556 ~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~ 610 (1991)
.+..+|+|++++.-..--..- +..|....... -...||.++|.++....
T Consensus 108 ~~~~~n~G~~~~r~t~~~~~~----~~~w~~~~~~~--~~~~DQ~~~n~~l~~~~ 156 (212)
T PF03407_consen 108 NGNLVNTGFYYFRPTPRTIAF----LEDWLERMAES--PGCWDQQAFNELLREQA 156 (212)
T ss_pred cCCccccceEEEecCHHHHHH----HHHHHHHHHhC--CCcchHHHHHHHHHhcc
Confidence 123469999999877654432 33455443322 12249999998876643
No 274
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=86.63 E-value=4 Score=49.70 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=90.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh---HHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCcc------CCCCCHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSM---VQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPD------NLKATAS 1282 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M---~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~------~~~pd~~ 1282 (1991)
.|..|-..|.-.|+++.|+..++.- .+++|-+.. ...++.|.+.+.-.|+++.|.+.++.... +-...+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3555555556678899998877643 344554442 45788888889999999999888775421 1122455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc----C--CCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILEL----E--AQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel----~--P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..+|.++|....+++.|+....+=+.+ + ....-++..|+++|...|..+.|...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7778999998888999999877765543 2 2245678999999999999988776544
No 275
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.56 E-value=4.7 Score=43.53 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH----HhcCCCCCHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV----QDHGVEPALEH 1249 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~----~~~gi~P~~~~ 1249 (1991)
...++..+...|++++|+.+.+.+.... +-|...+..+|.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555556666666666666666532 3355566666666666666666666665542 24566666543
No 276
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.02 E-value=2.4 Score=40.29 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHh---cCCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQD---HGVE-PA-LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~---~gi~-P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
+++.+...+...|++++|+.+|++.++. .|-. |. ..++..|..++.+.|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666655432 1111 11 4567778888888888888888887653
No 277
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=85.24 E-value=1.1e+02 Score=38.37 Aligned_cols=143 Identities=13% Similarity=0.080 Sum_probs=109.0
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH-HH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY-SC 1252 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y-~~ 1252 (1991)
-...|...|..-.+..-.+.|..+|-+..+.| +.++...+++.|.-++ .|+...|..+|+.=+.. -||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34578888888777777889999999999998 6678888888887554 67888999999865553 3443333 33
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
.++-+.+-++-+.|..+|+...+++..+ ..+|..+|.--..-|+..-+..+-+++.++-|.....-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHH
Confidence 4566788999999999999776654444 56899999888889999988888888889888765544433
No 278
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.18 E-value=1.4 Score=34.57 Aligned_cols=33 Identities=30% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 578899999999999999999999999999973
No 279
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=85.12 E-value=0.5 Score=55.72 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=19.1
Q ss_pred cchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEee--ccchhhh-ccccccccCCCcc-ccCCC
Q 040435 478 YLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAV--ETCKESF-HRFDKYLNFSNPL-ISENF 553 (1991)
Q Consensus 478 ~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV--~d~~~~~-~~~~~~~~~~~~~-~~~~~ 553 (1991)
.|++.-.+|=.+ .-+|+.+.|+|||+|.+|.+.=-.|-+.=|+-..+--. .+..... ..........++. +..-.
T Consensus 60 ~W~K~~~lr~~m-~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~ 138 (239)
T PF05637_consen 60 SWAKIPALRAAM-KKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLII 138 (239)
T ss_dssp HHTHHHHHHHHH-HH-TT-SEEEEE-TTEEE-------------------------------------------------
T ss_pred hhHHHHHHHHHH-HhCCCCCEEEEEcCCeEEEeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355555555333 23588999999999999998766654432211110000 0000000 0011111111111 11112
Q ss_pred CCCCcccccceeEeehHHHHHhhHHHHHHHHHHhc---hhccccccCCCCchhhhhc------cccccccccccccccCC
Q 040435 554 SPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDAN---EDRTLWKLGTLPPGLITFY------NLTYPLDRSWHVLGLGY 624 (1991)
Q Consensus 554 ~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~---~~~~~~~~~dqd~~n~~f~------~~~~~L~~~wN~~~~~~ 624 (1991)
..+..|+|+|++++-...|-+.-+.. |.... .+.......+|.++-.++. +++..+|.+|= -.|
T Consensus 139 t~d~~gLNtGsFliRns~ws~~fLd~----w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~~~~~~~vpq~~~---nsy 211 (239)
T PF05637_consen 139 TQDWNGLNTGSFLIRNSPWSRDFLDA----WADPLYRNYDWDQLEFDEQSALEHLLQWHPEILSKVALVPQRWF---NSY 211 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccc---ccc
Confidence 34556999999999999999855442 33221 1111123678887764433 34445554431 111
Q ss_pred Cccc-cccccCCceEeecccC
Q 040435 625 DPAL-NLTQIDNGAVVHYNGN 644 (1991)
Q Consensus 625 ~~~~-~~~~~~n~~IiHY~g~ 644 (1991)
.... .....+...|+||.|+
T Consensus 212 ~~~~~~~~~~~GDfvvhfaGC 232 (239)
T PF05637_consen 212 PEDECNYQYKEGDFVVHFAGC 232 (239)
T ss_dssp ---------------------
T ss_pred ccccccccccccccccccccc
Confidence 1111 1122334478999996
No 280
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=84.70 E-value=1.9 Score=33.57 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 568888999999999999999999999999975
No 281
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=83.98 E-value=0.2 Score=52.08 Aligned_cols=110 Identities=19% Similarity=0.366 Sum_probs=58.8
Q ss_pred CcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHHHhhcccccc-ccccccccccccc----ccccccccccCCCCCCCc
Q 040435 1350 AGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLACLVTAEKTDT-LLIKDVTSSERHS----KEYCAMYDICGERSDGKV 1424 (1991)
Q Consensus 1350 ~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~~l~~~~~~~-~~~~dvts~~~~~----~~~c~~~~~Cg~~~~~~~ 1424 (1991)
.||||+++ |.|++||.+ ||+...+..+.. ..+.+.+ .+..++...+.+. +..- -.|.| .++
T Consensus 1 ~~~~w~~~----h~F~sgd~s--hp~~~~~~~~~~--~~~~~~~~~~~~~~~~e~~~~~d~~~~~~---~~~~H---SEK 66 (116)
T PF14432_consen 1 GGCSWIEV----HSFVSGDRS--HPQSELINKMKE--EGYVPDTKEVGHDVDEEEKHDYDEEEKEE---SLCYH---SEK 66 (116)
T ss_pred CCCCccce----EEEEeCCCc--CccHHHHHHHHH--cCCcchhhhhCCCchhhhhhhcccccchh---hhhcc---HHH
Confidence 38999998 999999987 677654444322 1222222 1122222221110 0001 11333 378
Q ss_pred cccCCCCCCCCCChhHHHHHHhhCcCCCCCCCCCHHHHHHHHHHHHhhcccccCChhHHhhH
Q 040435 1425 LNCPYGSPSVKPDELFSAKIESLCPSISGNVCCTETQFETLRAQVQQAIPFLVGCPACLRNF 1486 (1991)
Q Consensus 1425 l~c~~~~~~~~~~~~~~~~l~~~Cp~~~~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~~N~ 1486 (1991)
|+.+++.... -....++++|+ .|-+.-..-.. + .-+.++-|.|.+++-|
T Consensus 67 lAiafgli~~----~vvkn~~RvC~-----DCH~~~K~iS~---~-~~ReIiVRD~~rfHhF 115 (116)
T PF14432_consen 67 LAIAFGLINT----RVVKNLKRVCG-----DCHSFIKFISK---I-TGREIIVRDSNRFHHF 115 (116)
T ss_pred HHHHhcccce----eEEecCCccch-----HHHHHHHHHHH---H-HCeEEEEeCCCeeeeC
Confidence 8888887654 22355668998 67665543222 2 1245666777776655
No 282
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.92 E-value=43 Score=35.37 Aligned_cols=65 Identities=17% Similarity=0.040 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
.....+.+...+|..++-.+++..+++-+..+|...+-++++|.+.|...++..+++.--++|++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34445666677777777778888777666667777778888888888888888887777777765
No 283
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=83.54 E-value=26 Score=45.79 Aligned_cols=104 Identities=15% Similarity=0.060 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHCccC----CCCCHHHHHHHHHHHHHcCChhH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCM-VDMLARAGELDIAIDLINQMPDN----LKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~L-i~~l~r~G~~eeA~~l~~~m~~~----~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
...+.|.+++..+.+ .-|+...|... ..++...|++++|.+.++++... -.-....+--+...+...+++++
T Consensus 247 ~~~~~a~~lL~~~~~---~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK---RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 455666666666654 23544333222 33444556666666666654320 01122334444555556667777
Q ss_pred HHHHHHHHHhcCCCCchHHHHH-HHHHHhCCCc
Q 040435 1300 GAGATSRILELEAQNSAGYLLA-SSMYAAGGLW 1331 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~~~yvlL-~~lya~~G~~ 1331 (1991)
|...+.++.+.+.-..+.|..+ +-.|...|+-
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 7777777766655555544433 4555566666
No 284
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.30 E-value=9.8 Score=47.14 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=45.0
Q ss_pred HHHHhcCCHHHHHHHHHhccC------------------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISR------------------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~------------------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
+.|.|.|++..|..-|++... .-+.+++.+..+|.+.+++.+|++.-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 467788888888888776432 012234444455555555555555555554432 2333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
--=-.||...|.++.|+..|+.+++
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3334444455555555555554443
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.62 E-value=1.1e+02 Score=36.19 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=42.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
...-|.++|...-|..-++++++--|+.+ .++..+..+|...|..++|.+..+.+...
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 34456778888888888888888766554 34556678888899998888888877643
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.08 E-value=2.1e+02 Score=39.01 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=47.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCchHHHHHHHHHHhCCC
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE-LEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-l~P~~~~~yvlL~~lya~~G~ 1330 (1991)
++..+....+.+++..+.+...+ .++..|-.+|.-+...+..+.-.+...++++ +..++--.-..+.+++++.+-
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~---~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGK---EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCc---cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCCc
Confidence 34445566677777777777753 3778888888888888876666555555544 333333334455666666654
No 287
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=81.88 E-value=38 Score=36.21 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q 040435 812 LVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSG 891 (1991)
Q Consensus 812 ~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eA 891 (1991)
.++..+...+........++.+++.+. .+....|.|+.+|++-+.+.....+.. ..+......++..|-+.+.++++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence 344444444555556666666655552 455566666766666433444444442 12223333355555555555555
Q ss_pred HHHHHHH
Q 040435 892 LRLFRQM 898 (1991)
Q Consensus 892 l~lf~~M 898 (1991)
.-++..+
T Consensus 89 ~~l~~k~ 95 (140)
T smart00299 89 VELYKKD 95 (140)
T ss_pred HHHHHhh
Confidence 5555554
No 288
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=81.69 E-value=24 Score=40.64 Aligned_cols=52 Identities=21% Similarity=0.169 Sum_probs=30.9
Q ss_pred HHHhcCCHHHHHHHHHhcCC--Cc----hhhhhHHHHhhhhcCChHHHHHHHHHHHHC
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--PD----VVLWSTMIAGFTLCGRPREAIAVFQEMNQA 1104 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~d----~~syn~LI~~y~~~g~~eeAl~lf~~M~~~ 1104 (1991)
.+...|++++|.+.|+.+.. |+ ..+.-.++.+|-+.|++++|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777777777776653 21 123344566677777777777777776653
No 289
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=81.52 E-value=12 Score=43.83 Aligned_cols=97 Identities=8% Similarity=0.007 Sum_probs=63.9
Q ss_pred hHHHHHHhhcC--CCChHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------
Q 040435 758 DSAVAVFDDCI--CRDSVSWNIMIQGHLDH-----GTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLG--------- 821 (1991)
Q Consensus 758 ~~A~~lfd~m~--~~d~~s~n~LI~a~~~~-----g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g--------- 821 (1991)
-.-++.|...+ ++|-.+|-+++..+... +..+=....++.|++-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 67888888888877653 555666677888888899888888888888765432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Q 040435 822 -------AYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD 854 (1991)
Q Consensus 822 -------~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak 854 (1991)
.-.-+..++++|...|+.||..+-..|++.+++
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr 170 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGR 170 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence 112244555555555555555555555555555
No 290
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.41 E-value=81 Score=37.29 Aligned_cols=160 Identities=20% Similarity=0.162 Sum_probs=101.3
Q ss_pred HhcCCHHHHHHHHHhccC--C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH--HHHHHHHHHHHh---
Q 040435 1156 AKCGAIEASRKAFDQISR--K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNA--VTTLSVLSACSH--- 1223 (1991)
Q Consensus 1156 ~k~G~~e~A~~lf~~m~~--~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~--~T~~~LL~ac~~--- 1223 (1991)
...|++++|.+.|+.+.. | ...+--.++-++-+.+++++|+..+++.... +-.||. +.|...++-+..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 356999999999999875 2 1234445566778899999999999997654 334433 234333332222
Q ss_pred -cCCHHH---HHHHHHHhHHhcC---CCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---H
Q 040435 1224 -GGLVEE---GLSFFNSMVQDHG---VEPALE------------HYSCMVDMLARAGELDIAIDLINQMPDNLKAT---A 1281 (1991)
Q Consensus 1224 -~G~~e~---A~~i~~~M~~~~g---i~P~~~------------~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~ 1281 (1991)
..+... |..-|+..+.++- ..||.. +=..+.+-|.+.|.+..|..-+++|.++.+.. .
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 223333 4444444444322 122221 12345677899999999999999998763333 3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..+-.|..+|...|-.++|.+..+-+-.--|+++
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4566677899999999999996665555555553
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.34 E-value=2.5e+02 Score=39.81 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.++.--+.|.+.+|..++..-.+.-...|.+...-+.+.+++++|.-+|+..-+ ..-.+.|+...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 333344455555555555322222233444444444556778888777765422 23456788889999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1231 LSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+.+..+|.. +..--..+-..|+.-+...|+.-||-++..+...
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 998887732 1211233456788888889999999888888764
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.71 E-value=1.4e+02 Score=37.12 Aligned_cols=33 Identities=3% Similarity=-0.107 Sum_probs=26.8
Q ss_pred CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
++.+.+...++++.++.|....++..++..+..
T Consensus 272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 678888999999999999888877777666554
No 293
>PRK09687 putative lyase; Provisional
Probab=80.36 E-value=1.5e+02 Score=36.11 Aligned_cols=79 Identities=9% Similarity=-0.031 Sum_probs=35.2
Q ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1042 SNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRP----REAIAVFQEMNQAQEKPNAITIINLL 1117 (1991)
Q Consensus 1042 ~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~----eeAl~lf~~M~~~Gv~Pd~~T~~~lL 1117 (1991)
+|..+.-..+.++...|..+....+..-+..+|...=...+.++.+.|+. .+++.++..+... .|+...-...+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~ 112 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAI 112 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHH
Confidence 34444444455555555433333332222334444334444555555542 3566666655332 34444444444
Q ss_pred HHHhh
Q 040435 1118 EACSV 1122 (1991)
Q Consensus 1118 ~a~a~ 1122 (1991)
.++..
T Consensus 113 ~aLG~ 117 (280)
T PRK09687 113 NATGH 117 (280)
T ss_pred HHHhc
Confidence 44443
No 294
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=80.32 E-value=9.8 Score=39.68 Aligned_cols=53 Identities=21% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
++..|+.+.|++.|.+.+.. .+-....|+.-..++.-.|+.++|+.-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555444432 112333444444444444555555444444444
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=80.06 E-value=1.8e+02 Score=36.97 Aligned_cols=59 Identities=14% Similarity=-0.003 Sum_probs=40.7
Q ss_pred CHHHHHHHHHH--HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 TASAWGALLSA--CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll~a--~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+...-+.|..| ...+|++.++.-...-+.+..| ++.+|-++|-......++++|-+...
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455555555 3467777777777777777777 67777777777777777777776655
No 296
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=79.51 E-value=1.8e+02 Score=36.70 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT-LSVLS 1219 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~-~~LL~ 1219 (1991)
.++..+++.-.+..-++.|+.+|-+..+ +++..++++|.-++. |+..-|..+|+-=.. .-||...| .-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 3444455555555556666666665543 355566666655443 344556666654322 12343332 23344
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN 1296 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~ 1296 (1991)
-+...++-+.|+.+|+..+++ +..+ ...|..||+-=..-|++..|..+=+.|.+. -|...+-....+-|....+
T Consensus 475 fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~-~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 475 FLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL-VPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH-cCcHhHHHHHHHHHhhhcc
Confidence 455667777777777755543 3333 467788888778889998888887777663 4555666666667776543
No 297
>PLN03181 glycosyltransferase; Provisional
Probab=79.41 E-value=5.5 Score=49.26 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC--eeEeeccchhhhccccccccCCCccccCCC
Q 040435 476 PKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM--VNGAVETCKESFHRFDKYLNFSNPLISENF 553 (1991)
Q Consensus 476 ~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~--~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~ 553 (1991)
+..|++.-.+|=.+- -+|+.+.+-|||.|+|+.+.=-+| .+... ..-+|.. + |.. .+-
T Consensus 180 p~~WaKipalRaAM~-a~PeAEWfWWLDsDALIMNp~~sL---Pl~ry~~~NLvvhg--------~-------p~~-vy~ 239 (453)
T PLN03181 180 NSYWAKLPVVRAAML-AHPEAEWIWWVDSDAVFTDMDFKL---PLHRYRDHNLVVHG--------W-------PKL-IYE 239 (453)
T ss_pred chhhhHHHHHHHHHH-HCCCceEEEEecCCceeecCCCCC---CHhhcCCccccccC--------C-------ccc-ccc
Confidence 557777777774432 378999999999999999762222 21100 0001100 0 000 000
Q ss_pred CCCCcccccceeEeehHHHHHhhHHHHH---------HHHH----HhchhccccccCCCCchhh
Q 040435 554 SPNACGWAFGMNMFDLKEWRKRNITGIY---------HYWQ----DANEDRTLWKLGTLPPGLI 604 (1991)
Q Consensus 554 ~~~~~yfNsGVll~nl~~wR~~~~~~~~---------~~~~----~~~~~~~~~~~~dqd~~n~ 604 (1991)
..+-.|+|+||+||....|-..-+..+. .+|- ...+++..+.-.||..+-.
T Consensus 240 ~qdw~GlN~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvy 303 (453)
T PLN03181 240 KRSWTALNAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVY 303 (453)
T ss_pred cccccccceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHH
Confidence 1223489999999998888774443211 1221 1233444466778887753
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.05 E-value=42 Score=36.89 Aligned_cols=100 Identities=15% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.-...++.+++..++..|.- +.|. .++-..-...+.+.|++.+|..+++++.+. .|....-.+|+..|.....-.
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~-~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER-APGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHcCCh
Confidence 33577899999999998853 7886 445555566788999999999999998764 455556677777777665545
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
.=...++++++.+++ +.+..++..+
T Consensus 95 ~Wr~~A~evle~~~d-~~a~~Lv~~L 119 (160)
T PF09613_consen 95 SWRRYADEVLESGAD-PDARALVRAL 119 (160)
T ss_pred HHHHHHHHHHhcCCC-hHHHHHHHHH
Confidence 556667778887764 3333333333
No 299
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=78.84 E-value=2.3 Score=59.95 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=58.3
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHhhh-cccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEE
Q 040435 1725 YRTYGRWVAANPAFVLCMSLAIGFVLCL-GVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILA 1797 (1991)
Q Consensus 1725 F~~~G~~va~~P~~~i~~~llv~~~l~~-Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~ 1797 (1991)
|.+|-.+|.||||.++++.++++++++. +..+++++||-.+| .|++.+.++....+++.|+... .+|++.
T Consensus 2 ~~~~~~~~~~~~~~vl~~~~~lt~~~~~~~~~~l~i~td~~~L-lp~~~~~~~~~~~~~~~f~~~~--~~i~vv 72 (862)
T TIGR03480 2 LVRLVGFCARHAWWVLAIALLLTALSVIYTVTNLSVNTDTSDL-LSPDLPFRQDERAYEKAFPQDE--DTIVVV 72 (862)
T ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhceecCCHHHh-cCCCCchhHHHHHHHHhcCCcc--CeEEEE
Confidence 5677889999999999999999999995 78899999999999 4678888887788899998773 445444
No 300
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.74 E-value=54 Score=39.37 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH---HHHHHHHcC
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA---LLSACRSYG 1295 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~---Ll~a~~~~g 1295 (1991)
.....|+..+|...|..... ..| +...--.|...|..+|+.++|..++..++.... ..-|.. -+....+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~---~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ---AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhccchhhHHHHHHHHHH---hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHHHHHHHHHHHHHh
Confidence 34567888888888887765 334 356667778888888999999999988885322 222222 222333333
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH-HHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT-RLLA 1341 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v-r~~m 1341 (1991)
+...... +++-+..+|+|...-+.|+..|...|+.++|... ...|
T Consensus 218 ~~~~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 218 ATPEIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred cCCCHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333 4455678899988888999999999999988864 3444
No 301
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=78.45 E-value=54 Score=42.92 Aligned_cols=128 Identities=16% Similarity=0.130 Sum_probs=80.1
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhHHhcCCCCCH--HHH
Q 040435 1178 SWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVL-SACSHGGLVEEGLSFFNSMVQDHGVEPAL--EHY 1250 (1991)
Q Consensus 1178 s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-~ac~~~G~~e~A~~i~~~M~~~~gi~P~~--~~y 1250 (1991)
.|..++..++. ....+.|.++++++.+. -|+..-|...- +.+...|++++|.+.|+.......--|.. ..+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444433 34577888888888763 57776665443 34557788899988888664311111222 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH-HcCCh-------hHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR-SYGNT-------ELGAGATSRI 1307 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~-~~g~~-------e~A~~~~e~l 1307 (1991)
--+...+.-.+++++|.+.+..+.+....+..+|.-+..+|. ..|+. ++|...++++
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 445666788899999999999998754555566666666554 46777 4555544444
No 302
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.30 E-value=18 Score=42.79 Aligned_cols=98 Identities=19% Similarity=0.119 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGG----LQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSC 1252 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~G----i~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~ 1252 (1991)
.|+.-+. +.+.|++.+|..-|...++.. ..||. +-=|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555443 345666888888888877643 22333 333566777888888888888888877776665 477777
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCC
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLK 1278 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~ 1278 (1991)
|...+.+.|+.++|...+++..++.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 77778888888888888887776543
No 303
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.26 E-value=3.7 Score=34.58 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
..+..+...|.+.|++++|.++++++.+..+.|...|..|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35667778888888888888888888776566777776654
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=78.24 E-value=53 Score=42.57 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=62.5
Q ss_pred HHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHH
Q 040435 951 DMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKS 1030 (1991)
Q Consensus 951 ~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~ 1030 (1991)
+...++|+++.|.++-+... +...|..|.....+.|+++-|.+.|.+... +..++--+...|+.+.-..
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34456788888888877765 566888888888888888888888887743 4445555555666665555
Q ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHh
Q 040435 1031 VHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFND 1069 (1991)
Q Consensus 1031 i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~ 1069 (1991)
+-......|- +|....++.-.|++++..+++.+
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555444441 33344444445555555555543
No 305
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=77.31 E-value=28 Score=37.44 Aligned_cols=75 Identities=17% Similarity=0.200 Sum_probs=55.9
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKA---TASAWGALLSACRSYGNTELGAGATSRILELEAQNSA---GYLLASSMYAA 1327 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~---~yvlL~~lya~ 1327 (1991)
.....+.|++++|.+.|+.+..+.+- ...+--.|+.++...|+++.|...+++.+++.|.++. ++...+-.+..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34456789999999999998775333 3456667888999999999999999999999998764 34444544444
Q ss_pred C
Q 040435 1328 G 1328 (1991)
Q Consensus 1328 ~ 1328 (1991)
.
T Consensus 97 ~ 97 (142)
T PF13512_consen 97 Q 97 (142)
T ss_pred H
Confidence 4
No 306
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=77.27 E-value=33 Score=42.95 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC-CchhHHHHHH
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAGG-LWVESSGTRL 1339 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G-~~~ea~~vr~ 1339 (1991)
.+.|...|.+.++++|+--..-. ++.++...| ..+...++++
T Consensus 242 ldkAi~~Y~kgFe~~~~~Y~GIN-~AtLL~~~g~~~~~~~el~~ 284 (374)
T PF13281_consen 242 LDKAIEWYRKGFEIEPDYYSGIN-AATLLMLAGHDFETSEELRK 284 (374)
T ss_pred HHHHHHHHHHHHcCCccccchHH-HHHHHHHcCCcccchHHHHH
Confidence 77899999999999976433322 333333333 3444444444
No 307
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=3e+02 Score=37.69 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=42.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~ 1262 (1991)
+..+.+..+.++++.+.+..-+. |+.-|..+|..+++.+.++.-.++..+.++. -..-+...-..+++.|+|.+.
T Consensus 712 ~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~-I~~~~~ippl~VL~~Lakn~~ 786 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEA-IEMQERIPPLHVLQILAKNGT 786 (933)
T ss_pred HHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHH-HHhcccCCHHHHHHHHhcCCc
Confidence 44455666677777666655432 5666777777777777665555544443321 011122223456777888775
Q ss_pred H
Q 040435 1263 L 1263 (1991)
Q Consensus 1263 ~ 1263 (1991)
+
T Consensus 787 l 787 (933)
T KOG2114|consen 787 L 787 (933)
T ss_pred e
Confidence 4
No 308
>PRK15331 chaperone protein SicA; Provisional
Probab=76.71 E-value=29 Score=38.29 Aligned_cols=86 Identities=12% Similarity=-0.023 Sum_probs=55.9
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
+-..|++++|..+|+-+.. ..| +..-+..|...+-..|++++|..++...-...+.|+...-.+..++...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~---~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI---YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH---hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 3467888888888876654 344 344455566666667778888877765433222344445556667777788888
Q ss_pred HHHHHHHHHh
Q 040435 1300 GAGATSRILE 1309 (1991)
Q Consensus 1300 A~~~~e~lle 1309 (1991)
|+..++.+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888777777
No 309
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=16 Score=43.86 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHH----HHHHHHcCCHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCM----VDMLARAGELD 1264 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~L----i~~l~r~G~~e 1264 (1991)
+|+..+|-..++++++. .+-|...+...=.+|...|+.+.-+..+++++.. ..|+...|.-+ .-.+..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 56666777777777653 4556677777777777777777777777766542 34554333322 22334555566
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
+|++.-++..+..+-|.-+-.++.......|+..+|.+..
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 6665555555433334444444444445555555555543
No 310
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=76.44 E-value=1.9e+02 Score=35.13 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=12.4
Q ss_pred hhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1077 LWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1077 syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
.||.-...+.+..++++|...+++.
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a 62 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRA 62 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHH
Confidence 3444444444443566665555443
No 311
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.30 E-value=85 Score=36.79 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=141.9
Q ss_pred hcCCHHHHHHHHHhcCC--Cc-----hhhhhHHHHhhhhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHhhc
Q 040435 1056 KCHLVELAWKLFNDVKK--PD-----VVLWSTMIAGFTLCGRPREAIAVFQEMNQA---QE--KPNAITIINLLEACSVA 1123 (1991)
Q Consensus 1056 k~G~l~~A~~lf~~m~~--~d-----~~syn~LI~~y~~~g~~eeAl~lf~~M~~~---Gv--~Pd~~T~~~lL~a~a~~ 1123 (1991)
+....++|..-|++..+ +. --+...||..+.+.|++++.++.|++|..- .+ .-+..+.++++...+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34467777777777653 22 223456788888889998888888887531 11 22345566676666555
Q ss_pred cChHHHHHHHHHHHHh-----ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--------CC-------HhHHHHHH
Q 040435 1124 TELSSSKWAHGIAIRR-----CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------KN-------IVSWSAMV 1183 (1991)
Q Consensus 1124 g~le~a~~i~~~~~k~-----g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------~d-------~~s~n~LI 1183 (1991)
...+.-..+++--.+. +-+.--.+-+-|...|...|.+....+++.++.. .| ...|..=|
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 4444444444332221 1111112234456667777777777777776642 11 24666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHH
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS-----HGGLVEEGLSFFNSMVQDHGVEPAL-----EHYSCM 1253 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~-----~~G~~e~A~~i~~~M~~~~gi~P~~-----~~y~~L 1253 (1991)
..|....+-..-..+|++...-.-.........+|+-|. +.|.+++|-.-|-+..+.|.-.-++ --|-.|
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 778777777777778887654222222333456677774 5678888766554444544433222 236667
Q ss_pred HHHHHHcCC----HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1254 VDMLARAGE----LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1254 i~~l~r~G~----~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
..++.+.|- -.||. |-+..|...+...|+.+|.... +..|+++++...
T Consensus 279 ANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~Nd-----I~eFE~Il~~~~ 330 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNND-----IIEFERILKSNR 330 (440)
T ss_pred HHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhccc-----HHHHHHHHHhhh
Confidence 778887762 12221 2135667778889999987653 233666666443
No 312
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.11 E-value=21 Score=42.25 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC---CCHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK---ATASAWGALL 1288 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~---pd~~~~~~Ll 1288 (1991)
.|+..+.. ...|++..|...|...++.|--.+ ....+--|...+.+.|++++|...|..+.+..+ .-+..+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666654 466779999999999887643222 234556688899999999999999888765422 2345666777
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
......|+.+.|...++++.+.-|+.+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 77888899999999999999999987664
No 313
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.33 E-value=44 Score=40.33 Aligned_cols=178 Identities=12% Similarity=0.119 Sum_probs=116.6
Q ss_pred hcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HH--HHHhcCCHHH
Q 040435 1157 KCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSV--LS--ACSHGGLVEE 1229 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~L--L~--ac~~~G~~e~ 1229 (1991)
-.|+..+|...++++.+ .|..+|+--=.+|...|+.+.-...+++.... ..||...|..+ +. ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35788888888888875 48899999999999999999999999888753 24555444333 22 3347899999
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC-----CCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK-----ATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~-----pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
|.+.-++..+ +.| |.-.-.++...+.-.|++.|+.+++.+-...-+ ....-|...+- +...+.++.|+++
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~-~iE~aeye~aleI 269 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF-HIEGAEYEKALEI 269 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh-hhcccchhHHHHH
Confidence 9998887754 665 445556677778889999999999988764211 11223333222 2334688999998
Q ss_pred HHHHH--hcCCCCchH---HHHHHHHHHhCCCchhHHHHHH
Q 040435 1304 TSRIL--ELEAQNSAG---YLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1304 ~e~ll--el~P~~~~~---yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
|++-+ +++.+++.+ |.-+-.+-...-.|..-.++-+
T Consensus 270 yD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 88643 355555532 2223444444444444443333
No 314
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=74.10 E-value=5.5e+02 Score=39.48 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--------HHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--------ASA 1283 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--------~~~ 1283 (1991)
.+|......+..+|.++.|....-...+. + -...+--....+...|+-..|+.++++..+...|+ +..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 46777778888899999998877666442 2 33456667788889999999999988765432333 222
Q ss_pred HHHHHHH--------HH-HcCC--hhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1284 WGALLSA--------CR-SYGN--TELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1284 ~~~Ll~a--------~~-~~g~--~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
-+.++.. |. ..|| .+.-.+.|..+.+..|+....|+.|+.-
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~y 1798 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKY 1798 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHH
Confidence 3333222 22 2233 3455678889999999888888888733
No 315
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=72.64 E-value=1e+02 Score=43.11 Aligned_cols=101 Identities=14% Similarity=0.200 Sum_probs=73.0
Q ss_pred HHHHHH-HhchhhhccchHHH--HHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEE
Q 040435 1721 MLSFYR-TYGRWVAANPAFVL--CMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILA 1797 (1991)
Q Consensus 1721 l~~~F~-~~G~~va~~P~~~i--~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~ 1797 (1991)
+.++|. +|+-|+...+..++ ++-++-.+++..|...++..=||.+| ++.+|+...-..-.+++|-+.+-.-+|+|.
T Consensus 453 ~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 453 LSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 333444 57777766554433 33344456667899999999999999 688888888877778888887767788887
Q ss_pred eCCCCCCCCCCCCCCHHHHHHHHHHHHHHhccc
Q 040435 1798 TLPDPKNGKQPSIITEDNFQLLFEMQKKVDGVR 1830 (1991)
Q Consensus 1798 ~~~~~~~~~~~~vL~~~~l~~~~~l~~~I~~l~ 1830 (1991)
++ +++-+++..+.+.++-+...+..
T Consensus 532 np--------~dl~~~~~~~~~~~~~~~fE~~~ 556 (868)
T KOG1934|consen 532 NP--------PDLSNPENRDNLNELVSEFESTP 556 (868)
T ss_pred CC--------ccCCCHHHHHHHHHHHHHHhcCC
Confidence 63 35666888888888888777664
No 316
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.43 E-value=1.6e+02 Score=35.43 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHCccCCCCC-------------HHHHHHH----HHHHHHcCChhHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARA-GELDIAIDLINQMPDNLKAT-------------ASAWGAL----LSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~-G~~eeA~~l~~~m~~~~~pd-------------~~~~~~L----l~a~~~~g~~e~A~~~~e~l 1307 (1991)
|+.-|-..+.-..+- -.++++.+++...+...-|+ ..+|..+ ...|...|++.+|...-+++
T Consensus 226 Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ 305 (361)
T COG3947 226 DVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRA 305 (361)
T ss_pred cHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444454444433322 24566666666654321111 2344444 44678899999999999999
Q ss_pred HhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1308 LELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1308 lel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+.++|-+...+..|.++|+..|+--.+.+-+..|.
T Consensus 306 ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 306 LTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 99999999999999999999999888887776653
No 317
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.15 E-value=1.3e+02 Score=36.25 Aligned_cols=114 Identities=13% Similarity=0.126 Sum_probs=55.6
Q ss_pred hcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1157 KCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
..|++.+|..+|+.... .+...--.|+.+|...|+.+.|..++..+...--.........-|....+.....+...+
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 34555555555554432 223334445556666666666666666554322122222211222233333333333333
Q ss_pred HHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1234 FNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1234 ~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
-...- -.| |...--.+.+.|.-.|+.++|.+.+-.+.
T Consensus 226 ~~~~a----adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 226 QRRLA----ADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33331 345 45666666777777777777776655543
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=69.88 E-value=13 Score=44.47 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=51.5
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
.+.|.+++|+.+|...+. +.| +...|..-..+|.|..++..|+.=-+........-..+|..-..|-...|+.++|
T Consensus 108 FKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344555555555443322 334 4444444444455555444444333333211111122333334444455777888
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
.+-++.+++++|++-. |-..|+....
T Consensus 185 KkD~E~vL~LEP~~~E----LkK~~a~i~S 210 (536)
T KOG4648|consen 185 KKDCETVLALEPKNIE----LKKSLARINS 210 (536)
T ss_pred HHhHHHHHhhCcccHH----HHHHHHHhcc
Confidence 8889999999998543 4444544443
No 319
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=69.68 E-value=2.4 Score=56.99 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=27.2
Q ss_pred HHHHHHHhchhhhccchHHHHHHHHHHHHhh
Q 040435 1721 MLSFYRTYGRWVAANPAFVLCMSLAIGFVLC 1751 (1991)
Q Consensus 1721 l~~~F~~~G~~va~~P~~~i~~~llv~~~l~ 1751 (1991)
+.++|+.+|+|||+|||=||...+.+++++-
T Consensus 2 ~~rlf~~hg~fcashpweviv~~~tlt~c~l 32 (886)
T TIGR00920 2 LSRLFRAHGQFCASHPWEVIVATLTLTICML 32 (886)
T ss_pred chhHhhhhcchhcCCCceehhhHHHHHHHHe
Confidence 4589999999999999999999888887654
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=69.04 E-value=2.1e+02 Score=39.02 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 040435 873 ISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLR 922 (1991)
Q Consensus 873 ~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g 922 (1991)
..| ++|--+.|.|++++|+++..+... ........|...+.++....
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRN--QFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCC
Confidence 344 577888899999999999866655 35566677888888886653
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.04 E-value=8.6 Score=29.96 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1282 SAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+|..+...+...|+.+.|...++++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777888888899999999999999998884
No 322
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=68.02 E-value=58 Score=39.89 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccC-------CCHhHHHHHHHHHHHcCC----HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh-cCC-
Q 040435 1161 IEASRKAFDQISR-------KNIVSWSAMVAAYGMNGL----AHEALALVAEMKLGGLQPN-AVTTLSVLSACSH-GGL- 1226 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~-------~d~~s~n~LI~ay~~~G~----~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~-~G~- 1226 (1991)
...|..+|+.|++ ++-.++.+|+.. ..+. .+++..+|+.+...|+..+ ..-+.+-+-++.. ...
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 4556777777764 344555555543 2222 4567788888888887653 3334333333332 222
Q ss_pred -HHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1227 -VEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1227 -~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
+.++.++++.+.+ .|+++...+|..+.-
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHHH
Confidence 5577888888754 589888888876643
No 323
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=67.74 E-value=3.1e+02 Score=33.93 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=94.6
Q ss_pred hhhhHHHHHHhcCCHHHHHHHHH-------hcCC--CchhhhhHHHHhhhhcCChHHHHHHHHHHHH-CCCCCC---HHH
Q 040435 1046 VLNSLIDGYSKCHLVELAWKLFN-------DVKK--PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQ-AQEKPN---AIT 1112 (1991)
Q Consensus 1046 v~naLI~~y~k~G~l~~A~~lf~-------~m~~--~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~-~Gv~Pd---~~T 1112 (1991)
++..+..+.++.|.++++...-- ...+ .-..+|-.+-.++-+.-++.+++.+-+.-.. .|..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44555566666666655543211 1111 1123444455555555555555554433222 122221 112
Q ss_pred HHHHHHHHhhccChHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------CCHh-HH
Q 040435 1113 IINLLEACSVATELSSSKWAHGIAIRRC-----LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-------KNIV-SW 1179 (1991)
Q Consensus 1113 ~~~lL~a~a~~g~le~a~~i~~~~~k~g-----~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------~d~~-s~ 1179 (1991)
..++-.|....+.++++.+.++.+.+-. -.....++-+|-..|++..++++|.-...+..+ .|.. -|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 2335555666666777766666655432 122345677777778877777776554433321 2321 12
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1180 -----SAMVAAYGMNGLAHEALALVAEMKL----GGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1180 -----n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
-.|..+|...|+..+|.+.-++..+ .|-+|- ......+.+.|...|+.|.|+.-|+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2244566666776666666665432 232211 112334445566667777666655543
No 324
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=67.56 E-value=7.5 Score=55.14 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=75.9
Q ss_pred HHHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcCCCCCc-eEEEEEEeCC
Q 040435 1722 LSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHLAPFYR-IEQLILATLP 1800 (1991)
Q Consensus 1722 ~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R-~~qvii~~~~ 1800 (1991)
.++++++|.++.+||+.+++.++++.+++.+-+..++.- -+.....|++.++++=.+-+++|||+.+= -++++|.+..
T Consensus 358 ~~~w~~~~~~v~~~P~~~l~~s~~ill~~~l~~~~~~~~-~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~ 436 (937)
T COG2409 358 SRFWRRVGTLVVRRPLAILVASLAILLVLALPLPLVRLG-YDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDH 436 (937)
T ss_pred cchhhhheeEEeeccHHHHHHHHHHHHHHHHHhcccccC-CcchhhccCccchhhHHHHHhhhccccccCCceEEecchh
Confidence 367889999999999999999999999998887777666 55677789999999999999999988652 2444555421
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhcc
Q 040435 1801 DPKNGKQPSIITEDNFQLLFEMQKKVDGV 1829 (1991)
Q Consensus 1801 ~~~~~~~~~vL~~~~l~~~~~l~~~I~~l 1829 (1991)
..=++..+-.+-++-+.|..+
T Consensus 437 --------~~r~~~~~a~i~~~~~~i~~v 457 (937)
T COG2409 437 --------DLRTPAALADIDKIAKAIAAV 457 (937)
T ss_pred --------hhcChHHHHHHHHHHHHHHhc
Confidence 122677777777776666655
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=67.22 E-value=1.6 Score=47.08 Aligned_cols=84 Identities=13% Similarity=0.092 Sum_probs=62.4
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHH
Q 040435 914 VLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEA 993 (1991)
Q Consensus 914 lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eA 993 (1991)
++..+.+.+........++.+.+.+...+....+.|+.+|++.++.+...++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777888888777677889999999999999888888888874433 4445677777788888888
Q ss_pred HHHHHHH
Q 040435 994 LSLLYSM 1000 (1991)
Q Consensus 994 l~lf~~M 1000 (1991)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 8877766
No 326
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=66.16 E-value=76 Score=42.01 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=58.7
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCC
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVT---TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T---~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~ 1262 (1991)
|-..+..+.|.+.|++.-+ +.|+..+ +..||.|-.+. ++...++-. .-..|-.+++|.|.
T Consensus 297 ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~Elq~-------------IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 297 YTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLELQQ-------------IGMKLNSLLGRKGA 359 (1226)
T ss_pred CcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHHHHH-------------HHHHHHHHhhccch
Confidence 4444556677777777665 5666543 44444433221 111111100 11224456788888
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
++.-.++++-. +.+.+-...+|+..|..+++.|+++.|-.
T Consensus 360 leklq~YWdV~------------~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 360 LEKLQEYWDVA------------TYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHHHhHH------------HhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 88776666533 34555666778899999999999988754
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=65.99 E-value=28 Score=41.83 Aligned_cols=76 Identities=16% Similarity=0.251 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKL-----GGLQPNAVTTLS 1216 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~-----~Gi~Pd~~T~~~ 1216 (1991)
..++..++..+..+|+.+.+...++++.. -+...|..||.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34567788899999999999999998875 3678999999999999999999999998865 467776665554
Q ss_pred HHHH
Q 040435 1217 VLSA 1220 (1991)
Q Consensus 1217 LL~a 1220 (1991)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=65.87 E-value=1.5e+02 Score=32.99 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCch-HHHHHHHHHHhh--CCHHHHHHHHHhcC
Q 040435 792 LWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVH-SVQNSVLSMYVD--ADMECARKLFDEMC 868 (1991)
Q Consensus 792 l~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~-~v~naLi~~yak--g~~e~A~~vf~~m~ 868 (1991)
++.++.+.+.|+.|+...+..+++.+.+.|....-. .+++.++-+|. .+...|++.-.+ .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 345566677889999999999999999998866543 34455554444 444444443322 12344455555443
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 040435 869 ERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG 938 (1991)
Q Consensus 869 ~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g 938 (1991)
..+..++..+...|++-+|+++.+..... +...-..++.|..+.+|...--.++.....++
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34567788899999999999999886332 22333557777777777766666666665543
No 329
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=64.93 E-value=67 Score=39.30 Aligned_cols=143 Identities=8% Similarity=0.062 Sum_probs=71.0
Q ss_pred CChHHHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHhCC---
Q 040435 770 RDSVSWNIMIQGHLD--HGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRC--LG----AYYEGLQVHGYIIRSGL--- 838 (1991)
Q Consensus 770 ~d~~s~n~LI~a~~~--~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~--~g----~~~~a~~l~~~~~k~G~--- 838 (1991)
....++.+++..... ...+++.+.+++.|.+.|.+-+..+|.+.+-.... .. ....++.+|..|.+.-.
T Consensus 58 ~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 58 NHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc
Confidence 344555555543322 11234566788888888888887777665444433 11 34557777777776543
Q ss_pred CCchHHHHHHHHHHhhC---CHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHc-CC--hHHHHHHHHHHHhCCCCCCC
Q 040435 839 WAVHSVQNSVLSMYVDA---DMECARKLFDEMCE-----RDVISWSVMIGGYVQS-AE--AFSGLRLFRQMVSGFKNEPD 907 (1991)
Q Consensus 839 ~~d~~v~naLi~~yakg---~~e~A~~vf~~m~~-----~d~~syn~LI~a~~~~-G~--~~eAl~lf~~M~~~~gv~Pd 907 (1991)
.++.+++.+|+.+-... -.+.+...|+.+.. .|..-+-+-|-++... .. ..++.+++..+.++ |+++.
T Consensus 138 s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik 216 (297)
T PF13170_consen 138 SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIK 216 (297)
T ss_pred CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccc
Confidence 34455566665552221 13444445544422 2222222222222111 11 33556666666655 55555
Q ss_pred HHHHHH
Q 040435 908 GQSLVS 913 (1991)
Q Consensus 908 ~~T~~~ 913 (1991)
...|..
T Consensus 217 ~~~yp~ 222 (297)
T PF13170_consen 217 YMHYPT 222 (297)
T ss_pred cccccH
Confidence 544443
No 330
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.89 E-value=34 Score=42.73 Aligned_cols=127 Identities=16% Similarity=0.144 Sum_probs=94.9
Q ss_pred HcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040435 1188 MNGLAHEAL-ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1188 ~~G~~~eAl-~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
..|+...|- +++.-+....--|+.+...+.| ..+.|.++.+.+.+...... +.....+-.|++.-+-+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHH
Confidence 356655554 4566666655678887776666 47899999999998876432 455667888999999999999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
..+-+.|..+--.++.+...........|-++++...+++++.++|...+.+
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 9999999865333556666666667778889999999999999987654333
No 331
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=62.42 E-value=1.1e+02 Score=39.32 Aligned_cols=136 Identities=10% Similarity=0.020 Sum_probs=78.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~ 1268 (1991)
..+.+.-+++-++..+ +.||..+--.+| |--.+..+.++.+++++.++. | ...+ .+....+..-.
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~l-------g~s~~~~~~g~ 245 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASL-------GKSQFLQHHGH 245 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhh-------chhhhhhcccc
Confidence 3445555555555554 567766544444 333455678888888877652 1 0011 11100000000
Q ss_pred HHHHCccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1269 LINQMPDN-LKATASAWGALLSACRSYGNTELGAGATSRILELEAQ--NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1269 l~~~m~~~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+.+..+ ..+-..+=..|..++++.|+.++|++.++.+++..|. +-..+..|...+-..+++.|+..+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11111111 1222334455777788889999999999999887665 45677888889999999888877665
No 332
>PRK12798 chemotaxis protein; Reviewed
Probab=61.18 E-value=4.5e+02 Score=33.53 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=113.8
Q ss_pred cCCHHHHHHHHHhccC----CCHhHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHH
Q 040435 1158 CGAIEASRKAFDQISR----KNIVSWSAMVAAYGM-NGLAHEALALVAEMKLGGLQPNAVT----TLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~-~G~~~eAl~lf~eM~~~Gi~Pd~~T----~~~LL~ac~~~G~~e 1228 (1991)
.|+.++|.+.+..+.. +.+..|-+|+.+-.. ..+..+|+++|++..- ..|-... ..--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999998864 456677777766544 5579999999999765 3454432 333344567899999
Q ss_pred HHHHHHHHhHHhcCCCCCHHH-HHHHHHHHHHcC---CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEPALEH-YSCMVDMLARAG---ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~~~~-y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
++..+-......|.-.|-... +..++.++.+.+ +.+.-.+++..|.. .--..+|-.+...-...|+.+.|..+.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~--~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDP--ERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCc--hhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999888888777666665433 333444444433 44555555666542 112468888888889999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
++++.+... ...--..+++|...
T Consensus 281 ~~A~~L~~~-~~~~~~ra~LY~aa 303 (421)
T PRK12798 281 ERALKLADP-DSADAARARLYRGA 303 (421)
T ss_pred HHHHHhccC-CCcchHHHHHHHHH
Confidence 999998744 33344556666554
No 333
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=60.83 E-value=13 Score=29.87 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777777777777777775543
No 334
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=60.79 E-value=4.8e+02 Score=33.80 Aligned_cols=162 Identities=10% Similarity=0.037 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 040435 771 DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLS 850 (1991)
Q Consensus 771 d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~ 850 (1991)
|-...-+++..+..+-...-...+..+|..-| -+...|..+++.+... .-+.-..+++++++..+. |++...-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 33445567888888888888888899998865 5677899999999888 456667788888887653 5556667778
Q ss_pred HHhhCCHHHHHHHHHhcC-----CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 040435 851 MYVDADMECARKLFDEMC-----ERD----VISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNL 921 (1991)
Q Consensus 851 ~yakg~~e~A~~vf~~m~-----~~d----~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~ 921 (1991)
.|-+++.+.+...|.+.. ++. -..|.-++.-- ..+.+..+.+........|..--.+.+.-+-.-|...
T Consensus 141 ~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 888888888888887762 221 12455444321 2345555555555554433333344444455556666
Q ss_pred CChHHHHHHHHHHHHcC
Q 040435 922 RDLTMGRMVHGLVIYRG 938 (1991)
Q Consensus 922 g~~~~a~~l~~~m~k~g 938 (1991)
.++.++.++...+++..
T Consensus 219 eN~~eai~Ilk~il~~d 235 (711)
T COG1747 219 ENWTEAIRILKHILEHD 235 (711)
T ss_pred cCHHHHHHHHHHHhhhc
Confidence 66666666666666554
No 335
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=60.55 E-value=1.7e+02 Score=31.26 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=50.0
Q ss_pred hcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHH
Q 040435 1056 KCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGI 1135 (1991)
Q Consensus 1056 k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~ 1135 (1991)
.||++......+-.+. .+....+.-+......|+-+.--+++.++.+ .-+++...+..+-.||.+.|+..++..++..
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3444444444443322 2233345556777788888888888888765 3367777777888888888888888888888
Q ss_pred HHHhccc
Q 040435 1136 AIRRCLA 1142 (1991)
Q Consensus 1136 ~~k~g~~ 1142 (1991)
+-+.|+.
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 8777754
No 336
>PRK09687 putative lyase; Provisional
Probab=59.22 E-value=4e+02 Score=32.38 Aligned_cols=75 Identities=7% Similarity=0.026 Sum_probs=40.7
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
++..+-...+.++++.|+.+....+.+.+..+++ .-..+.+++..|.. +|+..+.+|.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 3445555555666666664333333334333332 23456677777764 577777777653 346665555555554
No 337
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.02 E-value=1.5e+02 Score=39.88 Aligned_cols=161 Identities=16% Similarity=0.092 Sum_probs=90.7
Q ss_pred HHcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKL-------GGLQPNAVTTLSVLSACSHGG-----LVEEGLSFFNSMVQDHGVEPALEHYSCMV 1254 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~-------~Gi~Pd~~T~~~LL~ac~~~G-----~~e~A~~i~~~M~~~~gi~P~~~~y~~Li 1254 (1991)
....+.+.|+.+|+.+.+ .| +......+-.+|.+.. +.+.|+.++....+ . -.|+....-...
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~-g~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-L-GNPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-c-CCchHHHHHHHH
Confidence 344566666666666655 44 2223444555555433 45667777776543 1 223322222222
Q ss_pred HHHHH-cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC-CC
Q 040435 1255 DMLAR-AGELDIAIDLINQMPDNLKATASAWGALLSACR--SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG-GL 1330 (1991)
Q Consensus 1255 ~~l~r-~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~--~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~-G~ 1330 (1991)
...+. -.+...|.+++........+....+.++.-... ...+.+.|...++++-+.+ ++.+...++..|.-. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence 22222 235678888888776543344444433332222 3348889999999998888 445455555444443 88
Q ss_pred chhHHHHHHHHHHcCCcccCcEEE
Q 040435 1331 WVESSGTRLLAKERGVKVVAGNSL 1354 (1991)
Q Consensus 1331 ~~ea~~vr~~m~~~gi~k~~g~s~ 1354 (1991)
++.+......+++.|.+-.-..++
T Consensus 413 ~~~~~~~~~~~a~~g~~~~q~~a~ 436 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEVAQSNAA 436 (552)
T ss_pred ccHHHHHHHHHHHhhhhHHhhHHH
Confidence 888888888888887755444444
No 338
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=59.00 E-value=80 Score=34.13 Aligned_cols=114 Identities=11% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGL--QPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi--~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G 1261 (1991)
....+.|++++|.+.|+.+...-- +-....-..|+.++...|++++|...+++.++.+--.|+ ..|.....+|+.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 344577888888888888876421 112335566777888888888888888888774333333 34444444444322
Q ss_pred CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1262 ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..+ ..+..+.. .. +..+....|...++++++.-|++.
T Consensus 97 ~~~---~~~~~~~~-~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDE---GSLQSFFR-SD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred Hhh---hHHhhhcc-cc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 222 22222221 11 222345678888888999888764
No 339
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=58.31 E-value=96 Score=38.01 Aligned_cols=44 Identities=11% Similarity=0.041 Sum_probs=21.9
Q ss_pred hhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhhccChHHH
Q 040435 1086 TLCGRPREAIAVFQEMNQA--QEKPNAITIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1086 ~~~g~~eeAl~lf~~M~~~--Gv~Pd~~T~~~lL~a~a~~g~le~a 1129 (1991)
.+..+.++|+..+.+-..+ ...--..++..+..+.++.|..+++
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~m 62 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEM 62 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH
Confidence 3456667777777665442 1111223445555555555554443
No 340
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.15 E-value=11 Score=50.22 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~ 1268 (1991)
+.++++.+.+.+.-.--| -++|.-+-+.|-.+-|+.+.+.=..+ .++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHH
Confidence 456777777665543333 23444456778888887776543222 233457999999999
Q ss_pred HHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcc
Q 040435 1269 LINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKV 1348 (1991)
Q Consensus 1269 l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k 1348 (1991)
.-.++- +..+|..|+.....+||.+.|+..|++....+ .|+-+|...|+ .+++++||+-.-+++
T Consensus 665 ~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~knfe--------kLsfLYliTgn---~eKL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 665 AAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKNFE--------KLSFLYLITGN---LEKLSKMMKIAEIRN 728 (1202)
T ss_pred HHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhhhh--------heeEEEEEeCC---HHHHHHHHHHHHhhh
Confidence 988775 66899999999999999999999999876543 46677888888 557888887665555
Q ss_pred cC
Q 040435 1349 VA 1350 (1991)
Q Consensus 1349 ~~ 1350 (1991)
..
T Consensus 729 D~ 730 (1202)
T KOG0292|consen 729 DA 730 (1202)
T ss_pred hh
Confidence 43
No 341
>PRK11619 lytic murein transglycosylase; Provisional
Probab=57.58 E-value=6.7e+02 Score=34.40 Aligned_cols=116 Identities=9% Similarity=0.015 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040435 1190 GLAHEALALVAEMKLGG-LQPNAV--TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1190 G~~~eAl~lf~eM~~~G-i~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
.+.+.|..++....... ..+... ....+.......+...++...+...... ..+.....--+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 45677888887764432 322222 2223322222322245666666654221 12333344444455578888888
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
...|..|+....-...-..=+..+....|+.+.|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888876422222333335556566788888888888873
No 342
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=55.73 E-value=24 Score=49.95 Aligned_cols=62 Identities=11% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHhchhhhccchHHHHHHHHHHHHhhhcccCccccCCCcccccCCCChhhhhhhhhhhcC
Q 040435 1723 SFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKVETRPEKLWVGPGSRAAGEKQFFDSHL 1785 (1991)
Q Consensus 1723 ~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~etdp~~Lw~p~~S~a~~Ek~~fd~~F 1785 (1991)
+++.+++.++.+||+.++++.++++++...|+..++++.||.+++ ++++++.+.-.-+.+++
T Consensus 435 ~~~~~~~~~~~~~~~~v~~~~l~l~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~l~~~~ 496 (862)
T TIGR03480 435 ATLAPLDAFLRRHRRPVLGVTLILGIAALALLPQLRFDFNPLNLQ-DPKTESVRTFLELLADP 496 (862)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHHHHhccCCCCCCchhcc-CCCchHHHHHHHHHhCc
Confidence 456778889999999999999999999999999999999998776 67777766655555554
No 343
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=55.24 E-value=3.3e+02 Score=31.53 Aligned_cols=175 Identities=15% Similarity=0.054 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHhcc--CCC-HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1159 GAIEASRKAFDQIS--RKN-IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFN 1235 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~--~~d-~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~ 1235 (1991)
|-..-|+-=|.... .|+ ...||-|.--+...|+++.|.+.|+...+.... ...++..-.-++--.|+++.|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHH
Confidence 44444444444332 233 456777777777888888888888887764321 12222222223445677777776655
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDL-INQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l-~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
..-+ -+|+-.--+..+-+-.+.-+..+|..- .++.. .-|..-|+.-|-.+.--.--+ +.+++++.+-..++
T Consensus 158 ~fYQ---~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 158 AFYQ---DDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHh---cCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 4433 344322111112222233456666543 34443 235567777777665432111 12233333332232
Q ss_pred -------chHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1315 -------SAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1315 -------~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
..+|+-|+..|-..|..++|..+.+.-.
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4568899999999999999999887543
No 344
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=55.02 E-value=42 Score=40.38 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.++..++..+...|+++.+.+.++++...-+-+...|..|+.+|.+.|+...|+.+|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555555566666666666666555543334555666666666666666666666555544
No 345
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=54.62 E-value=1.8e+02 Score=32.75 Aligned_cols=59 Identities=15% Similarity=0.081 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV--TTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~--T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
+..+..-|.+.|+.++|++.|.++.+....+... .+..+|..+...|++..+..+..+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3334444444444444444444444433333222 2333444444444444444444433
No 346
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.32 E-value=71 Score=38.42 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=69.3
Q ss_pred hccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C--CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1139 RCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-------K--NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1139 ~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------~--d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
.|......+...++..-....+++++...+-+++. + ..++|-.++.. =++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 34555555566666666666778888887777664 1 23344333332 25678888888888888899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
|..|+..+|+.+.+.+++.+|.++...|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999988888887777553
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.01 E-value=1.9e+02 Score=31.54 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=55.6
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...++.+++..++..|.- +.|+ .+.-..-+..+.+.|+++||..++++..+. .+....-.+|+.-|.....-..=
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-~~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS-AGAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc-CCCchHHHHHHHHHHHhcCChHH
Confidence 357888999999988843 7775 344444556678899999999999999864 33333444555555443222223
Q ss_pred HHHHHHHHhcCCC
Q 040435 1301 AGATSRILELEAQ 1313 (1991)
Q Consensus 1301 ~~~~e~llel~P~ 1313 (1991)
...+.++++.+++
T Consensus 97 r~~A~~~le~~~~ 109 (153)
T TIGR02561 97 HVHADEVLARDAD 109 (153)
T ss_pred HHHHHHHHHhCCC
Confidence 3445556655443
No 348
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=52.93 E-value=30 Score=49.24 Aligned_cols=87 Identities=9% Similarity=0.022 Sum_probs=59.3
Q ss_pred ccchHHHHHHHHHHHHhhhcccCccc-cCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEeCCCCCCCCCCCCCC
Q 040435 1734 ANPAFVLCMSLAIGFVLCLGVIRFKV-ETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILATLPDPKNGKQPSIIT 1812 (1991)
Q Consensus 1734 ~~P~~~i~~~llv~~~l~~Gl~~~~~-etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~~~~~~~~~~~~vL~ 1812 (1991)
||||++|++.+++++++.++...+.. ..++..-+.|+++++++-.+..++.|++..+...++++...+ ..++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~~-------~~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLESN-------ERLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-------CCCC
Confidence 79999999998888888766544432 345556778999999999999999999877666555543111 1245
Q ss_pred HHHHHHHHHHHHHHh
Q 040435 1813 EDNFQLLFEMQKKVD 1827 (1991)
Q Consensus 1813 ~~~l~~~~~l~~~I~ 1827 (1991)
.+..+.+.++...++
T Consensus 74 ~~~~~~~~~~~~~l~ 88 (910)
T TIGR00833 74 DKDYATYDALIAKLR 88 (910)
T ss_pred HHHHHHHHHHHHHHh
Confidence 544444444444444
No 349
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.74 E-value=4.6e+02 Score=31.03 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
.|......|.|..+++||-..+.+
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHH
Confidence 344444555555566555554443
No 350
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=52.73 E-value=53 Score=37.06 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=53.3
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYG 1295 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g 1295 (1991)
+...|++++|..-|...++. ..+. ...|..-..++.+.+.++.|++--.+..+..+....+...-..+|-+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 45677788887777777653 2221 2345555556667777777776666655421111222222223455556
Q ss_pred ChhHHHHHHHHHHhcCCCCc
Q 040435 1296 NTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~ 1315 (1991)
.++.|..-|+++++++|..-
T Consensus 183 k~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hHHHHHHHHHHHHHhCcchH
Confidence 67777777777777777654
No 351
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=52.07 E-value=5.1e+02 Score=31.37 Aligned_cols=160 Identities=14% Similarity=0.011 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC-CCCCHHHHH
Q 040435 1177 VSWSAMVAAYGMNGL---AHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG-VEPALEHYS 1251 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~---~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g-i~P~~~~y~ 1251 (1991)
.+...++.+|...+. .++|..+++.+.... |+ ...+..-+..+.+.++.+++.+.+.+|+...+ .+.+....-
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence 456677777877665 345666777775543 33 34454556666678888888888888887533 223333333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHCc-cCCCCCHHHHHHHHHH-----HHHcCC------hhHHHHHHHHHHh--cCCCCc--
Q 040435 1252 CMVDMLARAGELDIAIDLINQMP-DNLKATASAWGALLSA-----CRSYGN------TELGAGATSRILE--LEAQNS-- 1315 (1991)
Q Consensus 1252 ~Li~~l~r~G~~eeA~~l~~~m~-~~~~pd~~~~~~Ll~a-----~~~~g~------~e~A~~~~e~lle--l~P~~~-- 1315 (1991)
..+..+..... ..|...+..+. .++.|....|...+-. ....++ .+....+++.+.+ ..|-++
T Consensus 163 ~~i~~l~~~~~-~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKSP-ELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhCc-HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 33333343333 34444444443 2344443212221111 112222 2222222332222 112222
Q ss_pred --hHHHHH---HHHHHhCCCchhHHHHHH
Q 040435 1316 --AGYLLA---SSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1316 --~~yvlL---~~lya~~G~~~ea~~vr~ 1339 (1991)
..+.+| +.-..++++|++|..+.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 122333 667888999999998765
No 352
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.63 E-value=1.5e+02 Score=33.62 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=62.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHH
Q 040435 1184 AAYGMNGLAHEALALVAEMKLGGLQPNAV------TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL-EHYSCMVDM 1256 (1991)
Q Consensus 1184 ~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~------T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~-~~y~~Li~~ 1256 (1991)
.-+..+|.+++|..-|.+.+.. -|... .|..-..|..+.+..+.|+.-....++ +.|+- .....-..+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 4577899999999999999874 33332 233333456678888888887776655 66642 233334568
Q ss_pred HHHcCCHHHHHHHHHHCccC
Q 040435 1257 LARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
|.+..++++|++=++++.+.
T Consensus 178 yek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh
Confidence 88899999999999888763
No 353
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=51.28 E-value=1.6e+02 Score=29.81 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 040435 722 YIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVA 801 (1991)
Q Consensus 722 ~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~ 801 (1991)
..++.-|-+-+...|-. ...+.-.-++.+...|++++|..+.+.+..||...|-+|-.+ +.|-.+.+..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 44555555555444422 223333334456789999999999999999999999988765 556667777777788777
Q ss_pred CCCCCHHHHH
Q 040435 802 GFEPNNSILV 811 (1991)
Q Consensus 802 gi~Pd~~ty~ 811 (1991)
| .|...+|.
T Consensus 98 g-~p~lq~Fa 106 (115)
T TIGR02508 98 G-DPRLQTFV 106 (115)
T ss_pred C-CHHHHHHH
Confidence 6 34444443
No 354
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=50.56 E-value=7.5e+02 Score=32.89 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=88.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 040435 771 DSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSIL-VLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVL 849 (1991)
Q Consensus 771 d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty-~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi 849 (1991)
+...|+.+|..--+..+.+.+...+..++.. -|-.+-| .....-=.+.|..+.+.+++++.++ |+..++.+|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 4556888776555555556666777777643 3544422 2223333567788888888888776 4556777787777
Q ss_pred HHHhh--CCHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 040435 850 SMYVD--ADMECARKLFDEMCE------RDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG 901 (1991)
Q Consensus 850 ~~yak--g~~e~A~~vf~~m~~------~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~ 901 (1991)
..... |+.+..++.|+.... .....|-..|.--...+++.....+|++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 77666 788888888877632 35567888888878888899999999988764
No 355
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=50.29 E-value=4.1e+02 Score=29.73 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=64.8
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 040435 1173 RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSC 1252 (1991)
Q Consensus 1173 ~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~ 1252 (1991)
.++...|..+|..+.+.|++.. +.++...++-+|.......+-.. .+....+.++--.|.++.+ ..+..
T Consensus 26 ~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL~-----~~~~~ 94 (167)
T PF07035_consen 26 PVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRLG-----TAYEE 94 (167)
T ss_pred CCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHhh-----hhHHH
Confidence 3555667777777777776543 34455566667766655554322 2333444444444443211 14667
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
+++.+...|++-+|.++.++....... .-..++.|....+|...--.++
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~ 143 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVF 143 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHH
Confidence 778888888888888888775321111 1233555555555544433333
No 356
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=50.02 E-value=23 Score=36.57 Aligned_cols=17 Identities=41% Similarity=0.825 Sum_probs=13.1
Q ss_pred CCCcccCCCCCCCCCCC
Q 040435 1607 SLGCSCGDCPLSPMCSS 1623 (1991)
Q Consensus 1607 ~~~CsC~dC~~s~~C~~ 1623 (1991)
+..|+|+||.-|+.|.+
T Consensus 4 s~~C~CsdC~ws~~~~~ 20 (122)
T PF04530_consen 4 SSGCCCSDCQWSGSPTV 20 (122)
T ss_pred CCCCcCCcccCCCCCcc
Confidence 46899999998766644
No 357
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.47 E-value=8.9 Score=46.36 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.|.+++|++.+....+..++....+.--.+++...+....|++-+..+++++|+....|-+-+.+....|.|++|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 46677777777777665556666666666677777778888888888888888888888888888888888888887766
Q ss_pred HHHHcCCcccCc
Q 040435 1340 LAKERGVKVVAG 1351 (1991)
Q Consensus 1340 ~m~~~gi~k~~g 1351 (1991)
.-.+.+.....+
T Consensus 207 ~a~kld~dE~~~ 218 (377)
T KOG1308|consen 207 LACKLDYDEANS 218 (377)
T ss_pred HHHhccccHHHH
Confidence 665566554443
No 358
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.30 E-value=4.6e+02 Score=30.05 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHH-----HHHHHHHcCCHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLS--VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSC-----MVDMLARAGELDIA 1266 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~--LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~-----Li~~l~r~G~~eeA 1266 (1991)
+.....+.+....-+-..-++.+ +..+....|++++|...++..+. .|.-+.+.. |...+...|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45555566654321221222222 33456788999999998886643 233333333 45667788999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+..++..... .-....-..-..++...|+-++|+..|+++++.+++++.
T Consensus 146 L~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 146 LKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 9999988642 001222333455788999999999999999999865443
No 359
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=47.74 E-value=1.1e+03 Score=33.90 Aligned_cols=248 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1041 ESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEAC 1120 (1991)
Q Consensus 1041 ~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~ 1120 (1991)
.++..+-...+..+.+.+..+....+...+..+|...=...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Q ss_pred hhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHH-HHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHE-ALALV 1199 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~e-Al~lf 1199 (1991)
...+.-. ...+.+.--.+|..+-...+..+.+.+..+. +...+..++...-...+.++...+..+. +...+
T Consensus 709 ~~~~~~~-----~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-----AALFAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-----HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC
Q 040435 1200 AEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA 1279 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p 1279 (1991)
..+.. .+|...-...+.++...|..+.+...+..+++ .++...-...+.++++.+. ++|...+..+. ..|
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~----d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L--~D~ 850 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR----ASAWQVRQGAARALAGAAA-DVAVPALVEAL--TDP 850 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc----CCChHHHHHHHHHHHhccc-cchHHHHHHHh--cCC
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
+..+=...+.++...+....+...+.++++
T Consensus 851 ~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 851 HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
No 360
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=47.51 E-value=34 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEM 1202 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM 1202 (1991)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666653
No 361
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=46.26 E-value=6.6e+02 Score=31.01 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC-------CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISRK-------NIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~~-------d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.++..+.....+.|.++.|...+..+... .....-.-...+-..|+..+|+..+++...
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455556666666666666666655541 122222233444555666666666666554
No 362
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=45.66 E-value=1.4e+02 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNN--SILVLVIQACRCLGAYYEGLQVHGY 832 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~--~ty~~lL~a~~~~g~~~~a~~l~~~ 832 (1991)
.+..+..-|.+.|+.++|++.|.++++....+.. ..+..+++.+.-.+++..+......
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3444444455555555555555555443333222 2344455555555555555544443
No 363
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.46 E-value=9.6e+02 Score=32.66 Aligned_cols=417 Identities=11% Similarity=0.024 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH-hcCCchHHHHHHhhcCCCC---------hHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----C
Q 040435 740 FTSIGNALMDFYM-KWRFPDSAVAVFDDCICRD---------SVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFE----P 805 (1991)
Q Consensus 740 d~~~~n~Li~~y~-k~G~~~~A~~lfd~m~~~d---------~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~----P 805 (1991)
+..++-.|...|. ...+++.|+..+++...-. -..-..++..+.+.+... |+..+++..+.--. +
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Q ss_pred CHHHHHHH-HHHHHhcCChHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhh---CCHHHHHHHHHhc-----------
Q 040435 806 NNSILVLV-IQACRCLGAYYEGLQVHGYIIRSG---LWAVHSVQNSVLSMYVD---ADMECARKLFDEM----------- 867 (1991)
Q Consensus 806 d~~ty~~l-L~a~~~~g~~~~a~~l~~~~~k~G---~~~d~~v~naLi~~yak---g~~e~A~~vf~~m----------- 867 (1991)
-...|..+ +..+...++...|.+.+..+...- -.+-..+.-.++.+... +..+++.+..+++
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Q ss_pred --CCCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC---------------------
Q 040435 868 --CERDVISWSVMIG--GYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLR--------------------- 922 (1991)
Q Consensus 868 --~~~d~~syn~LI~--a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g--------------------- 922 (1991)
..|-...|..|+. .+...|++..+...++++.. .+.......
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~-------------~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~ 283 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ-------------FLDEIKKSPSWPSWDEDGSIPLNIGEGSSN 283 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------HHHHhhcCccCCCcCCCeeEEeeccccccc
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHhccCC-------------CCCHhHHHHHHHHH
Q 040435 923 DLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKD-----TDSAFKVFSEMP-------------QKNKVSWNSALSGL 984 (1991)
Q Consensus 923 ~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~-----~e~A~~lf~~m~-------------~~dv~s~n~LI~a~ 984 (1991)
.-.. .-++.++-+..+..=.+..+.+..++....+ +++|.+..++.. -.+...|...+..+
T Consensus 284 ~~~~-~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~ 362 (608)
T PF10345_consen 284 SGGT-PLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCY 362 (608)
T ss_pred CCCc-eeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHH
Q ss_pred Hh---------cCCHHHHHHHHHHHhcCC-CCCC-------HHHHHHHHHHHhccCChhhHHHHHH--------HHHHhc
Q 040435 985 VV---------NEKYSEALSLLYSMGKGV-NEVD-------EITLVNILQICKCFVHPMECKSVHC--------VILRRA 1039 (1991)
Q Consensus 985 ~~---------~g~~~eAl~lf~~M~~~G-i~Pd-------~~T~~~lL~a~~~~g~~~~a~~i~~--------~~~~~g 1039 (1991)
+. .+++..|...+..|.... -.|+ ...+...--.+-..|+++.|+..|. ...+.+
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~ 442 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKS 442 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCC
Q ss_pred CCCchhhhhh--HHHHHHhcCCHHH----HHHHHHhcCC--------CchhhhhHHHHhhhhcCCh---HHHHHHHHHHH
Q 040435 1040 FESNELVLNS--LIDGYSKCHLVEL----AWKLFNDVKK--------PDVVLWSTMIAGFTLCGRP---REAIAVFQEMN 1102 (1991)
Q Consensus 1040 ~~~d~~v~na--LI~~y~k~G~l~~----A~~lf~~m~~--------~d~~syn~LI~~y~~~g~~---eeAl~lf~~M~ 1102 (1991)
...+..++.+ ++-.+...+.-.. +.++++.+.. -....+..++.++...... +.=..+-..|.
T Consensus 443 ~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 443 KFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred cchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Q ss_pred HC--CCCCCHHHHHHHHHHHhhc--cChHHHHHHHHHHHHhcccc---chhHH-----HHHHHHHHhcCCHHHHHHHHHh
Q 040435 1103 QA--QEKPNAITIINLLEACSVA--TELSSSKWAHGIAIRRCLAE---EVAVG-----TAVVDMYAKCGAIEASRKAFDQ 1170 (1991)
Q Consensus 1103 ~~--Gv~Pd~~T~~~lL~a~a~~--g~le~a~~i~~~~~k~g~~~---d~~v~-----naLI~~y~k~G~~e~A~~lf~~ 1170 (1991)
.. ...-+..+...+.-.+.+. ++..+.........+..-.. ...+| ..+.+.|...|+.++|.....+
T Consensus 523 ~~~~~~~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~ 602 (608)
T PF10345_consen 523 MANNKLGNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQ 602 (608)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Q ss_pred c
Q 040435 1171 I 1171 (1991)
Q Consensus 1171 m 1171 (1991)
.
T Consensus 603 ~ 603 (608)
T PF10345_consen 603 L 603 (608)
T ss_pred H
No 364
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.42 E-value=43 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=26.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
.|.-|+.+.|+++.|.+..+.+++++|++..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566788999999999999999999999876443
No 365
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=44.95 E-value=22 Score=28.27 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=15.2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHH
Q 040435 1243 VEP-ALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1243 i~P-~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
+.| +...|..|..+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445 3566666666666666666664
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=44.81 E-value=1.6e+03 Score=35.06 Aligned_cols=59 Identities=12% Similarity=-0.018 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
-..+|-.....++..|..+.|..+.-++.+.. -+..++..+...-..|+-..|..+...
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~ 1727 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQE 1727 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHH
Confidence 35789999999999999999999888877776 567788899999999998888876654
No 367
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.70 E-value=7.8e+02 Score=31.43 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=42.4
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCCC---chhhhhHHHHhhhhcCChHHHHHHHHHHHHCC
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKKP---DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQ 1105 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~~---d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~G 1105 (1991)
..|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35677788888888888888876543 45667788888888777777777777766655
No 368
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.69 E-value=2.5e+02 Score=32.47 Aligned_cols=127 Identities=16% Similarity=0.149 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMV 1254 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li 1254 (1991)
.+.-|+.+.+.+...+|+.+.++-.+.. +-|.-+-..++.-++-.|++++|..-++-..+ +.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 3455677778888888888877766642 33555666777788888888888877765533 4553 45666665
Q ss_pred HHHHHcCCHHHHH-HHHHHC--ccCCCCCHHHHHHHHH-HHHHc--CChhHHHHHHHHHHhcCCCCch
Q 040435 1255 DMLARAGELDIAI-DLINQM--PDNLKATASAWGALLS-ACRSY--GNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~-~l~~~m--~~~~~pd~~~~~~Ll~-a~~~~--g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+.-. +. ++|..= +.-.--....|-..|. +..-| |.-+.+...-+.+++..|...+
T Consensus 80 r~ea-------~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RCEA-------ARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HHHH-------HHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 4321 11 222211 1111102334544443 33322 3445555666677777666543
No 369
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=44.50 E-value=39 Score=27.31 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
+++.|...|...|++++|+..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 344444444444444444444444443
No 370
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.07 E-value=3.9e+02 Score=30.05 Aligned_cols=118 Identities=13% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDM 1256 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~ 1256 (1991)
.+..++..-.+......++.++++..- ....-.-|.-|.+.|+++.+...|.+....++-.. ....+..
T Consensus 59 ~~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---- 128 (182)
T PF15469_consen 59 VFKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---- 128 (182)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH----
Confidence 344444444444556666666666542 23334567778889999999998887755322221 1112211
Q ss_pred HHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1257 LARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
-+.++...++++.. .+|..|.... ...+....+...+++++|+....+.
T Consensus 129 -----v~~eve~ii~~~r~------~l~~~L~~~~---~s~~~~~~~i~~Ll~L~~~~dPi~~ 177 (182)
T PF15469_consen 129 -----VWSEVEKIIEEFRE------KLWEKLLSPP---SSQEEFLKLIRKLLELNVEEDPIWY 177 (182)
T ss_pred -----HHHHHHHHHHHHHH------HHHHHHhCCC---CCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 24455555555542 3455554433 5677888888999999986544444
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=43.74 E-value=33 Score=24.84 Aligned_cols=31 Identities=23% Similarity=0.177 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
+|..+...+...|+.+.|...+++++++.|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666677777777777777766664
No 372
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism]
Probab=43.39 E-value=32 Score=43.58 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=79.3
Q ss_pred ccCCCeEEEeeCCEeEecCCchhhccCCC-CC--eeEeeccchhhhccccc-cccCCCccccCC-C------CCCCcccc
Q 040435 493 YPKLEKILFLDDDIVVQKDLTPLWSVDLH-GM--VNGAVETCKESFHRFDK-YLNFSNPLISEN-F------SPNACGWA 561 (1991)
Q Consensus 493 lp~~dkvLyLD~Divv~~dl~~L~~~dl~-~~--~~aaV~d~~~~~~~~~~-~~~~~~~~~~~~-~------~~~~~yfN 561 (1991)
|.+.++.+|+|.|+....++..++++-.. .+ ......+--.....+.. +....++..... + +...+.||
T Consensus 122 ~~~~~a~i~~~~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~~~~~~~~~~l~~~~n 201 (369)
T KOG1950|consen 122 LIEDGAAIYLVDDIQRFRNDDANFDVPNELNYAKLYMFQLDFYSKLVKIDADDCILKNDDLLFSNWPDLFATNILPLIFN 201 (369)
T ss_pred eeccCceEEEecchhhccCccccccccchhcccccceeeecccccceEEeccchhcCChhhhhhhchhhccCCCccceec
Confidence 44578999999999999999888887443 11 11111111111111111 222222211111 1 12233588
Q ss_pred cceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhccccccccccccccc-cCC-Cc-ccccc--ccCCc
Q 040435 562 FGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFYNLTYPLDRSWHVLG-LGY-DP-ALNLT--QIDNG 636 (1991)
Q Consensus 562 sGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~~~~~~L~~~wN~~~-~~~-~~-~~~~~--~~~n~ 636 (1991)
+|++++=-....-.. +.........+..++|+++|..|.......|..+|..- ... ++ ..... ..-+.
T Consensus 202 ~~~~v~~ps~~~~~~-------~~~~~~~~~~~~~~~q~~l~~~f~~~~~~~~~~~n~~~~~~~~~p~~~~l~~~~~~~~ 274 (369)
T KOG1950|consen 202 SGLLVFEPSLCNYKD-------LMEFSEEFESYNGADQGFLHLIFSWIPDRPPPSVNLNLAKLWRHPKKNDLSRASSVLR 274 (369)
T ss_pred cCccccCCCccchhh-------HHHhhcccCCCCCccchhhHHHhhcccCCCcccccccccccccCccccchhhcccccc
Confidence 888876543322211 33333334447789999999999877767777777641 111 11 01111 11122
Q ss_pred eEeecccCCCcccc
Q 040435 637 AVVHYNGNNKPWLD 650 (1991)
Q Consensus 637 ~IiHY~g~~KPW~~ 650 (1991)
..+||.|..|||.-
T Consensus 275 ~~~~y~~~~~p~~~ 288 (369)
T KOG1950|consen 275 YALHYLGANKPELC 288 (369)
T ss_pred hhhhccccCCCCcc
Confidence 45699998788843
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.35 E-value=2.3e+02 Score=33.43 Aligned_cols=177 Identities=9% Similarity=0.085 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHhccC----C---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHhcCC
Q 040435 1159 GAIEASRKAFDQISR----K---NIVSWSAMVAAYGMNGLAHEALALVAEMKL---GGL--QPNAVTTLSVLSACSHGGL 1226 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~~----~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~---~Gi--~Pd~~T~~~LL~ac~~~G~ 1226 (1991)
...++|+.-|++..+ + .-...-.||..+.+.|++++.++.|.+|.. ..+ .-+..+.++++.--+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356666666665542 1 223445566667777777777776666642 111 1233345556555554444
Q ss_pred HHHHHHHHHHhHHhcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCCC-------HHHHHHHHHH
Q 040435 1227 VEEGLSFFNSMVQDHG----VEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKAT-------ASAWGALLSA 1290 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~g----i~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~pd-------~~~~~~Ll~a 1290 (1991)
.+.-.++++.-++... -...-.+-.-|..+|...|.+..-.++++++... ...| ..+|..=+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 4444444433222110 1111122334445555555555555555544321 1111 2234444445
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHH------HHHHHhCCCchhHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLA------SSMYAAGGLWVESS 1335 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL------~~lya~~G~~~ea~ 1335 (1991)
|-.+.|-..-..++++++.+..--|...++- +.+..+.|+|++|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 5555555555666666665543333222211 23444555666654
No 374
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.20 E-value=86 Score=40.81 Aligned_cols=146 Identities=19% Similarity=0.142 Sum_probs=96.8
Q ss_pred cCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1158 CGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
.|+++.|..++-.+.+ ..-+.++.-+.+.|..++|+++ .+|.. -|...| +.|+++.|.++..+
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFelal----~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELAL----KLGRLDIAFDLAVE 662 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhhh----hcCcHHHHHHHHHh
Confidence 3667777776666653 3445666667777777777653 34443 244433 67888888887665
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1237 MVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1237 M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
. -+..-|..|.++...+|++..|.+.|.+.. -|..|+-.+...|+.+.-..+++...+.+..|.+
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~--------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A 727 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR--------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA 727 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc--------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH
Confidence 4 145668888888888888888888888765 3567777777788877666666666555554422
Q ss_pred HHHHHHHHHHhCCCchhHHHHHH
Q 040435 1317 GYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1317 ~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
-..|-..|+.++...+..
T Consensus 728 -----F~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 728 -----FLAYFLSGDYEECLELLI 745 (794)
T ss_pred -----HHHHHHcCCHHHHHHHHH
Confidence 345677888877666543
No 375
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=43.18 E-value=6.9e+02 Score=30.39 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHhccCC-----CCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 040435 939 LGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP-----QKNKVSWNSALSGLVVNEKYSEALSLL 997 (1991)
Q Consensus 939 ~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~-----~~dv~s~n~LI~a~~~~g~~~eAl~lf 997 (1991)
-.++..+....|..+++.+++..-.++++... ..|...|..+|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34555566666666666666666666655432 236667777777777777755444333
No 376
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=42.01 E-value=97 Score=34.14 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=45.6
Q ss_pred HHHHHHHHHH---HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1282 SAWGALLSAC---RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1282 ~~~~~Ll~a~---~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
.+.+.|+... ..+++.+.++.++.-+.-+.|+.+..-+.-+.++...|+|.+|..+.+.+.+.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3444444433 356678888888888888888888877777888888888888888777665443
No 377
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=41.90 E-value=63 Score=39.07 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=28.9
Q ss_pred HHHHhhcccccCCCeEEEeeCCEeEecCCchhhccC
Q 040435 484 HLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVD 519 (1991)
Q Consensus 484 y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~d 519 (1991)
|..=.+.-++...+.||+||+|.|...|++.||+.+
T Consensus 79 ~~~K~lA~l~ssFeevllLDaD~vpl~~p~~lF~~~ 114 (271)
T PF11051_consen 79 FQNKWLALLFSSFEEVLLLDADNVPLVDPEKLFESE 114 (271)
T ss_pred chhhhhhhhhCCcceEEEEcCCcccccCHHHHhcCc
Confidence 333334556667999999999999999999999973
No 378
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=41.89 E-value=1e+02 Score=35.32 Aligned_cols=76 Identities=17% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC----CchHHHHHHHHHHhCCCchh
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ----NSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~----~~~~yvlL~~lya~~G~~~e 1333 (1991)
.|-|+ ++|.+.|-.+.....-+....-..+..|....|.+.++.++-+++++.+. |+..+..|+.+|...|+.+.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 56666666665432233344445555566677888888888888886443 47778888888888888776
Q ss_pred H
Q 040435 1334 S 1334 (1991)
Q Consensus 1334 a 1334 (1991)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 5
No 379
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.56 E-value=4.5e+02 Score=30.87 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=14.5
Q ss_pred HcCChhHHHHHHHHHHhcCCCCc
Q 040435 1293 SYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
..+++++|+.+|+++-...-+++
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccch
Confidence 44567777777777766555543
No 380
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=40.84 E-value=50 Score=25.64 Aligned_cols=27 Identities=22% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666554
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.09 E-value=3.2e+02 Score=33.14 Aligned_cols=160 Identities=13% Similarity=0.150 Sum_probs=78.4
Q ss_pred hccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCC--HhHHH--HHHHHHHHcCCHHHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKN--IVSWS--AMVAAYGMNGLAHEALA 1197 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d--~~s~n--~LI~ay~~~G~~~eAl~ 1197 (1991)
...-+.+|+.+++.+.+.|- .. |.+......--...+.+.++| +.+|- .|.-+-.+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 33445667777777766551 11 222222222222233344443 33332 23344456788888888
Q ss_pred HHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 040435 1198 LVAEMKLGGLQPNAVT----TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLIN 1271 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~~T----~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~ 1271 (1991)
.|+.+.+. .| ..| ...||.+|.....+.....++.+.- +. -.|. ...|++ ++.|. ..+-+
T Consensus 297 ~~RDL~ke--~p-l~t~lniheNLiEalLE~QAYADvqavLakYD-di-slPkSA~icYTa---ALLK~------RAVa~ 362 (556)
T KOG3807|consen 297 IMRDLMKE--FP-LLTMLNIHENLLEALLELQAYADVQAVLAKYD-DI-SLPKSAAICYTA---ALLKT------RAVSE 362 (556)
T ss_pred HHHHHhhh--cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-cCcchHHHHHHH---HHHHH------HHHHh
Confidence 88887653 23 222 3456777776665555555544331 11 1222 123322 22222 22222
Q ss_pred HCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1272 QMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1272 ~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
++.|+..+-.-|-.+ ...|.++..+++|.+|.-|.
T Consensus 363 ----kFspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 363 ----KFSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred ----hcCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcH
Confidence 244554433333222 23477888899999998776
No 382
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=39.93 E-value=25 Score=43.38 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=91.6
Q ss_pred CCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC--eeEeec-cchhhhccc-cccccCCCcccc
Q 040435 475 NPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM--VNGAVE-TCKESFHRF-DKYLNFSNPLIS 550 (1991)
Q Consensus 475 ~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~--~~aaV~-d~~~~~~~~-~~~~~~~~~~~~ 550 (1991)
.+..|.++-.+|=.+-+ +|+.+.|=+||.|.++.+---+|=+.-++-. +..+.. |.. .+.-. .-.+..+.|...
T Consensus 156 ~~~~W~KiP~Ir~tM~k-yP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~nd~~-~~~~~n~~~~~~~~~~~d 233 (364)
T KOG4748|consen 156 LPGVWAKLPAIRQTMLK-YPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLRNDQK-SINPLNIFRLRPRTPSLD 233 (364)
T ss_pred ccchhHHhHHHHHHHHH-CCCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhcccccc-ccccCCcccccccccccc
Confidence 44577777777766544 6889999999999999987766665544431 222222 110 00000 001111222111
Q ss_pred C-----C-CCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhhhc------cccccccccc-
Q 040435 551 E-----N-FSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLITFY------NLTYPLDRSW- 617 (1991)
Q Consensus 551 ~-----~-~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~f~------~~~~~L~~~w- 617 (1991)
. . ++-+..|+|+|=+|+--.+|-+--+. .|-+..-....+...+|+++-.... +.|..|+.++
T Consensus 234 ~~~~~~~ii~qD~nG~naGSfLirns~~~~~llD----~w~dp~l~~~~~~~~Eq~al~~~~e~h~~l~~~vgilp~r~i 309 (364)
T KOG4748|consen 234 DLEDIAFIIPQDCNGINAGSFLIRNSEWGRLLLD----AWNDPLLYELLWGQKEQDALGHFLENHPQLHSHVGILPLRYI 309 (364)
T ss_pred chhhhceecccCCCCccccceEEecCccchhHHH----hccCHHHHhhccchHHHHHHHHHHhhchhhhhheeeccHHHH
Confidence 1 1 23344589999888876666553222 1212111123355566665543322 2344443332
Q ss_pred cccccCCCccccccccCCceEeecccCCCccccccccccccccchhhhh-hhhh
Q 040435 618 HVLGLGYDPALNLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVIL-WSLR 670 (1991)
Q Consensus 618 N~~~~~~~~~~~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~-d~p~ 670 (1991)
|... .+.+ .+...+-..++||.|+ | .+....+.|.+|.++ +..-
T Consensus 310 ns~~-~~~~--~~g~~egdlvvhFaGC---~---~~~~C~~~~~~y~~~~~~~~ 354 (364)
T KOG4748|consen 310 NSYP-NGAP--GYGYEEGDLVVHFAGC---Y---VRNRCLEEMEKYFNLIDNKQ 354 (364)
T ss_pred hcCC-CCCC--CCccccCCeEEEeccc---c---cHhHHHHHHHHHHHHHHHhh
Confidence 2110 0111 1122234579999997 4 444566778888776 4433
No 383
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=39.78 E-value=2e+02 Score=34.87 Aligned_cols=115 Identities=11% Similarity=0.114 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-c-CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040435 1192 AHEALALVAEMKL-GGLQPNAVTTLSVLSACSH-G-GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~-~Gi~Pd~~T~~~LL~ac~~-~-G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~ 1268 (1991)
..+|+.+|+...- ..+--|......+|..... . .....-.++.+.+...+|-.++..+..+++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552111 1233344444444444432 1 12233334444555566667777777888888888888888888
Q ss_pred HHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1269 LINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1269 l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
+.+..... ..-|...|..+|..-..+|+.+....+.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 87766443 334677888888888888887766665543
No 384
>PRK10941 hypothetical protein; Provisional
Probab=39.50 E-value=69 Score=38.61 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=31.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
+.|-.++...++++.|.++.+.++.+.|+++.-+--.+-+|+..|.+..|..
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~ 236 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 3444555666666666666666666666666555555666666666666554
No 385
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=39.37 E-value=74 Score=36.38 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
|....|+--|...+. +.|+ +..|+-|.--|..+|+++.|.+.|+...+-.+-...+...-.-++.--|+++.|.+-
T Consensus 79 GL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 444444444444332 5554 455666665666666666666666666542111111111111123334566666666
Q ss_pred HHHHHhcCCCCc
Q 040435 1304 TSRILELEAQNS 1315 (1991)
Q Consensus 1304 ~e~llel~P~~~ 1315 (1991)
+.+--+-+|+||
T Consensus 156 ~~~fYQ~D~~DP 167 (297)
T COG4785 156 LLAFYQDDPNDP 167 (297)
T ss_pred HHHHHhcCCCCh
Confidence 666666666665
No 386
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=38.67 E-value=1.4e+02 Score=30.04 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HhCCCCchHHHHHHHH
Q 040435 787 TLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYII-RSGLWAVHSVQNSVLS 850 (1991)
Q Consensus 787 ~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~-k~G~~~d~~v~naLi~ 850 (1991)
+.-++.+-++.+....+.|++....+.|+||.+.+|+..|..+++-+. +.|. ....|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 344666677777778889999999999999999999999999999776 4442 2334554443
No 387
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=37.91 E-value=48 Score=25.25 Aligned_cols=28 Identities=11% Similarity=0.116 Sum_probs=18.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+..++...|+.+.|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455566667777777777777776665
No 388
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.85 E-value=7.4e+02 Score=29.21 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHcCCHHHHHHHHHHCccC-CCCCHHHHHH---HH--HHHHHc-CChhHHHHHHHHHHhcCCCCch
Q 040435 1258 ARAGELDIAIDLINQMPDN-LKATASAWGA---LL--SACRSY-GNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~-~~pd~~~~~~---Ll--~a~~~~-g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+..|++.+|.+++++.... +..+..-|.. ++ +.|... .+.--+.+++++-.+++|.-..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 4567788888888776432 1112222221 22 224433 6777788888888888887433
No 389
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.49 E-value=2e+02 Score=37.67 Aligned_cols=127 Identities=14% Similarity=0.127 Sum_probs=68.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC--CHhHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISRK--NIVSWS---AMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~~--d~~s~n---~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
.|+.-|.+++++++|..++..|.=. ....|. .+++.+.+..-..+....++.+.-.=..|....-..+...|..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d- 491 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD- 491 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-
Confidence 4677899999999999999998621 223333 3334444443344444445444432222221111111111111
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
--.+-|+++ ..-+.|.+++++|..+--++. +...+.-+-......|+.++|..
T Consensus 492 ~V~~~aRRf--------------------FhhLLR~~rfekAFlLAvdi~-----~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 492 PVSDLARRF--------------------FHHLLRYQRFEKAFLLAVDIG-----DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred HHHHHHHHH--------------------HHHHHHhhHHHHHHHHHHhcc-----chHHHHHHHHHHHhccchhhhhc
Confidence 001122222 344567889999988887775 33455555556667777777754
No 390
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=36.93 E-value=1.8e+02 Score=29.36 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+....+.| .+...|..+++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 34555566666777899999999999999999999999999998765433 24456666553
No 391
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=36.82 E-value=1.2e+02 Score=33.10 Aligned_cols=53 Identities=8% Similarity=-0.056 Sum_probs=46.6
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
.+++.+.++.+++.+.-+.|+.+..-..-+.++...|+|+||..+.+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 47889999999999999999999999999999999999999999888776554
No 392
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=36.75 E-value=19 Score=44.26 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=25.8
Q ss_pred hhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhc
Q 040435 482 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWS 517 (1991)
Q Consensus 482 ~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~ 517 (1991)
....||.+---+-. ||||+|+||+++++.|=+
T Consensus 228 Sdl~RLA~LyKYGG----vYLDTDvIvLksl~~l~N 259 (409)
T KOG1928|consen 228 SDLSRLALLYKYGG----VYLDTDVIVLKSLSNLRN 259 (409)
T ss_pred HHHHHHHHHHHhCC----EEeeccEEEecccccccc
Confidence 56778887655555 899999999999997754
No 393
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=36.23 E-value=1.7e+02 Score=29.81 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+.| +....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666677899999999999999999999999999998876644 33336776654
No 394
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=36.12 E-value=23 Score=37.97 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=56.0
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHH
Q 040435 1015 ILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREA 1094 (1991)
Q Consensus 1015 lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeA 1094 (1991)
++..+.+.+.+......++.+...+...+..+.+.|+..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4455555666666667777777666666778888888888888777777777763322 4445566667777777777
Q ss_pred HHHHHHHH
Q 040435 1095 IAVFQEMN 1102 (1991)
Q Consensus 1095 l~lf~~M~ 1102 (1991)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 77766653
No 395
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=1.5e+02 Score=35.78 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=67.3
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC-C--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 040435 937 RGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ-K--------NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEV 1007 (1991)
Q Consensus 937 ~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~-~--------dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~P 1007 (1991)
.|......+...++..-....+++++...+-.+.. + ..++|--++.. =++++++.++..=.+-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 44444555566666666666677777776655543 1 23344333322 35668888888888888889
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHHHHHhc
Q 040435 1008 DEITLVNILQICKCFVHPMECKSVHCVILRRA 1039 (1991)
Q Consensus 1008 d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g 1039 (1991)
|.+|++.+|..+.+.++...+.++.-.|+...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999888888888888888888777766554
No 396
>PRK09169 hypothetical protein; Validated
Probab=35.38 E-value=2.1e+03 Score=33.81 Aligned_cols=433 Identities=13% Similarity=0.056 Sum_probs=224.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHH---c----CCCCCHHHHHHHHHHHHhcCChHHHHHHh--------ccCC-
Q 040435 907 DGQSLVSVLKACTNLRDLTMGRMVHGLVIY---R----GLGCDLFVGNSLIDMYAKCKDTDSAFKVF--------SEMP- 970 (1991)
Q Consensus 907 d~~T~~~lL~a~~~~g~~~~a~~l~~~m~k---~----g~~pd~~v~naLI~~y~k~G~~e~A~~lf--------~~m~- 970 (1991)
+......+|+++++-.+-+..++.-..+-. . ....+..-....+++++|..+-+.+...- .+..
T Consensus 245 ~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~l 324 (2316)
T PRK09169 245 RAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERGL 324 (2316)
T ss_pred CHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChhh
Confidence 455667777887776655443332222111 1 11234455566677777776544322221 1111
Q ss_pred --CCCHhHHHHHHHHHHhcCCHHH----HHHHHHHHhcCC---CCCCHHHHHHHHHHHhccCChhhHHHH----HHHHHH
Q 040435 971 --QKNKVSWNSALSGLVVNEKYSE----ALSLLYSMGKGV---NEVDEITLVNILQICKCFVHPMECKSV----HCVILR 1037 (1991)
Q Consensus 971 --~~dv~s~n~LI~a~~~~g~~~e----Al~lf~~M~~~G---i~Pd~~T~~~lL~a~~~~g~~~~a~~i----~~~~~~ 1037 (1991)
.-+..-....+.++++-.+.+. |..+-.++...- -..+.--+.+.|.++++..+-+.+... -..+.+
T Consensus 325 ~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~ 404 (2316)
T PRK09169 325 LQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLAR 404 (2316)
T ss_pred hhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHh
Confidence 0133334445666666555443 222333332111 134566677888888887765433222 222222
Q ss_pred h-cC--CCchhhhhhHHHHHHhcCCHHHHHHHHHhc----CC-------CchhhhhHHHHhhhhcCChH----HHHHHHH
Q 040435 1038 R-AF--ESNELVLNSLIDGYSKCHLVELAWKLFNDV----KK-------PDVVLWSTMIAGFTLCGRPR----EAIAVFQ 1099 (1991)
Q Consensus 1038 ~-g~--~~d~~v~naLI~~y~k~G~l~~A~~lf~~m----~~-------~d~~syn~LI~~y~~~g~~e----eAl~lf~ 1099 (1991)
. +. ..|..-....+.+++|-+.-+.+......+ .. -+..-....+.++++-++.+ -+..+..
T Consensus 405 ~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~ 484 (2316)
T PRK09169 405 DAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAA 484 (2316)
T ss_pred chhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 1 11 234555566677888877655443333322 11 23344555677777665533 2333444
Q ss_pred HHHHC---CCCCCHHHHHHHHHHHhhccChHHHHHHHHHH----HH---hccccchhHHHHHHHHHHhcCCHHH----HH
Q 040435 1100 EMNQA---QEKPNAITIINLLEACSVATELSSSKWAHGIA----IR---RCLAEEVAVGTAVVDMYAKCGAIEA----SR 1165 (1991)
Q Consensus 1100 ~M~~~---Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~----~k---~g~~~d~~v~naLI~~y~k~G~~e~----A~ 1165 (1991)
.+... .-.-+..-+..+|.|+++.+..+.....-..+ .. ..-..+..-....+.+++|-++-+. |.
T Consensus 485 rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~ 564 (2316)
T PRK09169 485 RLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAE 564 (2316)
T ss_pred HHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHH
Confidence 44221 12345566788999999888776654433222 11 1122345556677888888766332 33
Q ss_pred HHHHhccC-------CCHhHHHHHHHHHHHcCCH----HHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHH
Q 040435 1166 KAFDQISR-------KNIVSWSAMVAAYGMNGLA----HEALALVAEMKLGG---LQPNAVTTLSVLSACSHGGLVEEGL 1231 (1991)
Q Consensus 1166 ~lf~~m~~-------~d~~s~n~LI~ay~~~G~~----~eAl~lf~eM~~~G---i~Pd~~T~~~LL~ac~~~G~~e~A~ 1231 (1991)
.+...+.. -+...+...+.++++-+.. +.|..+........ -..|..-+..++.|+++-...+...
T Consensus 565 aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr 644 (2316)
T PRK09169 565 ALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCR 644 (2316)
T ss_pred HHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHH
Confidence 34444332 2556777788888887753 23444555543321 1235667888999999988877665
Q ss_pred HHHHHhHHhcCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHC----cc----CCCCCHHHHHHHHHHHHHcCCh
Q 040435 1232 SFFNSMVQDHGVE------PALEHYSCMVDMLARAGELDIAIDLINQM----PD----NLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1232 ~i~~~M~~~~gi~------P~~~~y~~Li~~l~r~G~~eeA~~l~~~m----~~----~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
.....+.....-. -+..+...++.++.|-.+.+.+.+....+ .. ...-|..-...+++++.+--..
T Consensus 645 ~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~ 724 (2316)
T PRK09169 645 QAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEE 724 (2316)
T ss_pred HHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCc
Confidence 5544443321111 24667888889999988765533333222 11 0223566677777887765554
Q ss_pred hHHHHHHHHHHhc---CCC--CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1298 ELGAGATSRILEL---EAQ--NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1298 e~A~~~~e~llel---~P~--~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+....+.+.+..- +++ ..-.-..++|..-...+|-+....+.
T Consensus 725 ~acr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKwp~~~~c~~ 771 (2316)
T PRK09169 725 EACRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKWPQEPACQQ 771 (2316)
T ss_pred cHHHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhCCCCHHHHH
Confidence 4444443333221 111 11222345666666666666554443
No 397
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=34.23 E-value=73 Score=25.63 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMK 1203 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~ 1203 (1991)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666654
No 398
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.78 E-value=1.5e+03 Score=31.63 Aligned_cols=133 Identities=9% Similarity=0.050 Sum_probs=69.1
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhccC
Q 040435 1047 LNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-TIINLLEACSVATE 1125 (1991)
Q Consensus 1047 ~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~~lL~a~a~~g~ 1125 (1991)
..+........|+.+.+..+-.-|. -|..++.-+.+.+.+++|++++..-. .|... -|...+-.
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~----~~el~yk~ap~Li~------ 571 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQR----NPELFYKYAPELIT------ 571 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcc----chhhHHHhhhHHHh------
Confidence 3444455566677776665554443 36667788889999999998876531 22211 11111100
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCH---HHHHHHH----HhccCCCHhHHHHHHHHHHHcCCHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAI---EASRKAF----DQISRKNIVSWSAMVAAYGMNGLAHEA 1195 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~---e~A~~lf----~~m~~~d~~s~n~LI~ay~~~G~~~eA 1195 (1991)
....+.....++.+-.........++.++.+.+.. ..+.+.. ......+...+|.++..|+.+.+-+.-
T Consensus 572 -~~p~~tV~~wm~~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll 647 (911)
T KOG2034|consen 572 -HSPKETVSAWMAQKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLL 647 (911)
T ss_pred -cCcHHHHHHHHHccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchH
Confidence 01122233333333333444445555555554322 2222222 223346778888888888887665433
No 399
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.59 E-value=7.2e+02 Score=32.01 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=33.6
Q ss_pred hhHHHHhhhh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 040435 1078 WSTMIAGFTL---CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVAT 1124 (1991)
Q Consensus 1078 yn~LI~~y~~---~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g 1124 (1991)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..++-..|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555554 4789999999999999998888776655655554443
No 400
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=33.52 E-value=56 Score=39.43 Aligned_cols=84 Identities=11% Similarity=-0.015 Sum_probs=65.1
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKA-TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
+-|.+.|.++||++.+.+... ..| +++++..-..||.+...+..|+.-.+.++.++..-.-+|-..+.+-.+.|+..|
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia-~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA-VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc-cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 457889999999999987765 345 888888888999999999999988888888877666666666666667777777
Q ss_pred HHHHHH
Q 040435 1334 SSGTRL 1339 (1991)
Q Consensus 1334 a~~vr~ 1339 (1991)
|.+=.+
T Consensus 184 AKkD~E 189 (536)
T KOG4648|consen 184 AKKDCE 189 (536)
T ss_pred HHHhHH
Confidence 665433
No 401
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.44 E-value=84 Score=40.62 Aligned_cols=98 Identities=13% Similarity=0.007 Sum_probs=73.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
...|+...|...+..... ..|- -.....|..++.+.|...+|..++.+........+.++..+.+++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 356778888887776543 4553 23445567778888888899998887665334456788889999999999999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHH
Q 040435 1300 GAGATSRILELEAQNSAGYLLAS 1322 (1991)
Q Consensus 1300 A~~~~e~llel~P~~~~~yvlL~ 1322 (1991)
|.++++.+++++|+++..-..|.
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHH
Confidence 99999999999999887554443
No 402
>PRK10941 hypothetical protein; Provisional
Probab=32.89 E-value=2.2e+02 Score=34.40 Aligned_cols=71 Identities=6% Similarity=0.008 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
+.+-.+|.+.++++.|....+.+..-.+.++.-|.--.-.|.+-|....|..-++..++..|+++.+-.+-
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44556788888999999888888765566777788888888999999999999999999999888755443
No 403
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=31.97 E-value=2.7e+02 Score=28.42 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHHHHHHHCcc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1265 IAIDLINQMPD-NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1265 eA~~l~~~m~~-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
+..+-++.+-. .+-|++.+..+.|.||++.+++..|.++++-+...-.+....|--+ ..+++-.+.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~------------lqElkPtl~E 95 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI------------LQELKPTLEE 95 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH------------HHHHhhHHHH
Confidence 44444554433 2678999999999999999999999999988876554443334322 2356666777
Q ss_pred cCCc
Q 040435 1344 RGVK 1347 (1991)
Q Consensus 1344 ~gi~ 1347 (1991)
.||.
T Consensus 96 LGI~ 99 (108)
T PF02284_consen 96 LGIP 99 (108)
T ss_dssp HT--
T ss_pred hCCC
Confidence 7763
No 404
>PF10819 DUF2564: Protein of unknown function (DUF2564) ; InterPro: IPR020314 This entry contains proteins with no known function.
Probab=31.68 E-value=1.1e+02 Score=29.23 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhhhcccCC--CCCCCchHHHHHHHHHHHHHHhhhcc--CChhHHHHHHHHHHHHhHHHHHHHHh
Q 040435 248 SLMKHCKESQRAIGDANS--DAELPSSALNQAQAMGHVLSIAKDQL--YDCPTVQRKFRAMIQSTEGTVTALKR 317 (1991)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (1991)
++.-.++..|+++|-|++ |.++-++|-.-|+..+.-|..|+... .|- .|...=...|+..|-|++.+|+
T Consensus 7 Qve~aVetAqkmvG~AT~smdp~~Le~A~qAve~Ar~ql~~a~~~at~lD~-~Fl~~~~~~L~~~eHQL~Eak~ 79 (79)
T PF10819_consen 7 QVEMAVETAQKMVGQATMSMDPDQLEHATQAVEDAREQLSQAKSHATGLDE-PFLQQSEQLLDDCEHQLDEAKH 79 (79)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 455567779999999886 55566666666777776677777444 444 6777888889999999888763
No 405
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.35 E-value=4.3e+02 Score=35.51 Aligned_cols=117 Identities=14% Similarity=0.091 Sum_probs=60.4
Q ss_pred hcCCHHHHHHHHHhccC--------CCHhHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040435 1157 KCGAIEASRKAFDQISR--------KNIVSWSAMVAAYGMNG-----LAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~--------~d~~s~n~LI~ay~~~G-----~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~ 1223 (1991)
...+.+.|...|+.+.+ -+.....-|...|.+.. +.+.|+.++.+..+.| .|+...+...+.-...
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGT 339 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCC
Confidence 44455555555554432 12234444555555532 5566788877777766 4666655554433333
Q ss_pred -cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHCccC
Q 040435 1224 -GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD--MLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1224 -~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~--~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
..+..+|.++|....+ .|..+-. -+-++.. ..+-..+.+.|..++.+..++
T Consensus 340 ~~~d~~~A~~yy~~Aa~-~G~~~A~-~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAK-AGHILAI-YRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ccccHHHHHHHHHHHHH-cCChHHH-HHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 2456778888877643 2433221 1111111 112233667777777766553
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=31.34 E-value=7.9e+02 Score=31.36 Aligned_cols=149 Identities=11% Similarity=0.031 Sum_probs=64.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC----chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHhhcc
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKKP----DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITI--INLLEACSVAT 1124 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~~----d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~--~~lL~a~a~~g 1124 (1991)
+...++.|+.+.+..+++.-... +..-++ .+...+..|+. ++++.+.+.|..|+.... .+.|...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34445566666666555543211 111122 22223344443 334444455655543211 12333334455
Q ss_pred ChHHHHHHHHHHHHhccccchh--HHHHHHHHHHhcCCHHHHHHHHHhccCCCHhH---HHHHHHHHHHcCCHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVA--VGTAVVDMYAKCGAIEASRKAFDQISRKNIVS---WSAMVAAYGMNGLAHEALALV 1199 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~--v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s---~n~LI~ay~~~G~~~eAl~lf 1199 (1991)
+.+..+ .+.+.|...+.. .....+...+..|+.+-+..+++.-..++... ..+++..-+..|+.+ +.
T Consensus 147 ~~~~v~----~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv 218 (413)
T PHA02875 147 DIKGIE----LLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IV 218 (413)
T ss_pred CHHHHH----HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HH
Confidence 554333 333444333211 12223444556677776666666544433221 123333334556543 44
Q ss_pred HHHHHCCCCCCHH
Q 040435 1200 AEMKLGGLQPNAV 1212 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~ 1212 (1991)
+.+.+.|..++..
T Consensus 219 ~~Ll~~gad~n~~ 231 (413)
T PHA02875 219 RLFIKRGADCNIM 231 (413)
T ss_pred HHHHHCCcCcchH
Confidence 4455667666643
No 407
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.48 E-value=2.5e+02 Score=32.26 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGV--EPALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi--~P~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
++|++.|-++...+.--++. .-..|..+-...+.+++++++...++-++- .++++.+..|+..+-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45677777776655433333 333333344456677777777666553322 345666777777777777666664
No 408
>PF13934 ELYS: Nuclear pore complex assembly
Probab=30.42 E-value=6.3e+02 Score=29.67 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=69.1
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1178 SWSAMVAAYG--MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1178 s~n~LI~ay~--~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.|...|.||. .++++++|++++-+- .+.|+... -++.++...|+.+.|+.+++.+.- .-.+.+.-..+..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 3445555554 456777887776322 23333222 366677778888888888876521 1112333333334
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+ ..+|.+.||..+.+...+. -....|..++..|..... . ...+++++++
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~--~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~L 198 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDE--LRRRLFEQLLEHCLEECA--R-SGRLDELLSL 198 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchh--hhHHHHHHHHHHHHHHhh--h-hhHHHHHHhC
Confidence 4 5568899999988887742 124578888887776553 1 2225555554
No 409
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.13 E-value=1.6e+03 Score=30.77 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHH-H---HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPNAV-T---TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARA 1260 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T---~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~ 1260 (1991)
++...|+-++|-.+.++|.... |++ - ..++..||+-.|+-....+++.-.+.+ ..-|+.-+..+.-++.-.
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD--~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD--VNDDVRRAAVIALGFVLF 584 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc--cchHHHHHHHHHheeeEe
Confidence 3445677777888888877532 222 1 233445666677666665555543332 222333333333333344
Q ss_pred CCHHHHHHHHHHCccCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1261 GELDIAIDLINQMPDNLKATAS--AWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1261 G~~eeA~~l~~~m~~~~~pd~~--~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.+.+.....++-+.+...|-+. +-.+|.-+|+-.|+- +|..+++.+..
T Consensus 585 ~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-EAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-HHHHHHhhhhc
Confidence 4455444444444433222211 222334444444432 34554544444
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.72 E-value=5e+02 Score=33.05 Aligned_cols=53 Identities=9% Similarity=-0.014 Sum_probs=34.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHhHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAV--TTLSVLSACS--HGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~--T~~~LL~ac~--~~G~~e~A~~i~~~M~~ 1239 (1991)
+..++++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34677888888888888876 555554 2333444443 45567778888776654
No 411
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=29.65 E-value=96 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.|..+...|.+.|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555566666666666665554
No 412
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=29.49 E-value=2.8e+02 Score=35.24 Aligned_cols=141 Identities=13% Similarity=0.055 Sum_probs=95.8
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..|++-.|-+-....++.+.-.|+.. -.........|.++.|...+......+.....+...++......|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 45666666555555556555555543 3334456778999999999988766555667888899999999999999999
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCcccCcEEEEEEcCeEeEEEcC
Q 040435 1303 ATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVVAGNSLVHVDNKACKFIAG 1367 (1991)
Q Consensus 1303 ~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~ 1367 (1991)
.++.++.-+-+++......+..-...|-++++..-++.+-... ++...-|+..-....-|-.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCc
Confidence 9999998887777755444444455688888777777664443 33334477665444444433
No 413
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.43 E-value=1.3e+03 Score=29.56 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 040435 1149 TAVVDMYAKCGAIEASRKAFDQISRK---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGG 1206 (1991)
Q Consensus 1149 naLI~~y~k~G~~e~A~~lf~~m~~~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G 1206 (1991)
..|+.-|.-.|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34667777788888888888877665 34667777777777777666666666665554
No 414
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=29.22 E-value=3.8e+02 Score=32.26 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH-
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLG--GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR- 1259 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~--Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r- 1259 (1991)
|.+++..+++.+++...-+--+. .++|...-.. |--|++.|....+.++-..-++.-+- -+...|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHH
Confidence 67888888888887765444322 2444443333 33478888888888877776653111 123448887777665
Q ss_pred ----cCCHHHHHHHHHHC
Q 040435 1260 ----AGELDIAIDLINQM 1273 (1991)
Q Consensus 1260 ----~G~~eeA~~l~~~m 1273 (1991)
.|+++||++++..-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 69999999998543
No 415
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.00 E-value=1e+03 Score=28.24 Aligned_cols=83 Identities=12% Similarity=0.043 Sum_probs=44.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--------CCH-hHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR--------KNI-VSWSAMVAAYGMNGLAHEALALVAEMKLGG---LQPNAVTTLSVL 1218 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~--------~d~-~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G---i~Pd~~T~~~LL 1218 (1991)
+-..|.+..++++|-..|.+-.. ++. ..|-+.|-.|....++..|...+++--+.+ -.-|..+...||
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL 235 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL 235 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence 33445555666666555543321 111 234445555666667777777777643322 122455677777
Q ss_pred HHHHhcCCHHHHHHHH
Q 040435 1219 SACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~ 1234 (1991)
.+| ..|+.+++..+.
T Consensus 236 ~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 236 TAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHh-ccCCHHHHHHHH
Confidence 766 356666665544
No 416
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.85 E-value=3.2e+02 Score=36.02 Aligned_cols=132 Identities=12% Similarity=0.032 Sum_probs=86.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCH
Q 040435 911 LVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKY 990 (1991)
Q Consensus 911 ~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~ 990 (1991)
-+.+...+.+.|..+.|+++ ...||.. .....+.|+++.|.++..+. .+..-|..|-.+..+.|++
T Consensus 617 rt~va~Fle~~g~~e~AL~~-------s~D~d~r-----Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL-------STDPDQR-----FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhHHhHhhhccchHhhhhc-------CCChhhh-----hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccc
Confidence 34455555555655555433 2222221 22345678889888876544 4677899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 991 SEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 991 ~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
..|.+.|.+.+. |.+|+-.+...|+-+....+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 683 ~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 683 PLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 999999987754 56777777778877766665555555552 233344566777888777777655
Q ss_pred C
Q 040435 1071 K 1071 (1991)
Q Consensus 1071 ~ 1071 (1991)
.
T Consensus 748 ~ 748 (794)
T KOG0276|consen 748 Q 748 (794)
T ss_pred C
Confidence 3
No 417
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=28.61 E-value=3.7e+02 Score=29.27 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhcC---------CCChHHHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHH
Q 040435 743 IGNALMDFYMKWRFPDSAVAVFDDCI---------CRDSVSWNIMIQGHLDHGT-LGEGLWWFYKARVAGFEPNNSILVL 812 (1991)
Q Consensus 743 ~~n~Li~~y~k~G~~~~A~~lfd~m~---------~~d~~s~n~LI~a~~~~g~-~~~Al~lf~~M~~~gi~Pd~~ty~~ 812 (1991)
.-|.++.-.+..+.+..-..+++.+. ..+-.+|++++.+.++... ---+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34566655555556666555555542 2356678888888866655 4467888888888888888888999
Q ss_pred HHHHHHhc
Q 040435 813 VIQACRCL 820 (1991)
Q Consensus 813 lL~a~~~~ 820 (1991)
++++|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99888765
No 418
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.25 E-value=1.8e+03 Score=30.63 Aligned_cols=74 Identities=9% Similarity=0.133 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 040435 743 IGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRC 819 (1991)
Q Consensus 743 ~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~ 819 (1991)
++-..|..|.-.|++++|-.+.-.|-..+..-|---+.-++..++......+ |.....+.+...|..+|-.+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 3445555555666777776666666666666666666666666554432222 2221112344556666666654
No 419
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=28.02 E-value=2.2e+02 Score=32.02 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCccc
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVKVV 1349 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~k~ 1349 (1991)
+++|...|+++.+.+|++......| .+. ..|-++...+.+++....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHhhhh
Confidence 5677788888999999887644333 222 245566666666665444
No 420
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=27.70 E-value=7.7e+02 Score=30.50 Aligned_cols=134 Identities=16% Similarity=0.164 Sum_probs=87.4
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHhHHhcCCCCCH
Q 040435 1174 KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH------GGLVEEGLSFFNSMVQDHGVEPAL 1247 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~------~G~~e~A~~i~~~M~~~~gi~P~~ 1247 (1991)
.|-.-|+- +-+++++.++++....+. |-....-..|.+|.. .-++.....+|+.+.. +.|++
T Consensus 262 QDr~lW~r--------~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSP 329 (415)
T COG4941 262 QDRSLWDR--------ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSP 329 (415)
T ss_pred cchhhhhH--------HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCC
Confidence 35556654 236788888888887774 888888888877742 2256677777776643 66664
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH
Q 040435 1248 E-HYSCMVDMLARAGELDIAIDLINQMPDN--LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1248 ~-~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl 1320 (1991)
. +.|--+ ++++.--.+.++..++-+... +.-....|..=.+-+.+.|..++|..+|++++++.++....-.+
T Consensus 330 vV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 330 VVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred eEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 3 333222 344444456667777766543 33333455556667889999999999999999998876554333
No 421
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=27.60 E-value=1e+03 Score=28.00 Aligned_cols=157 Identities=11% Similarity=0.091 Sum_probs=86.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
-+..|++.-++.-|...++++.+|=. +-- -|--|.+..+.+---++.+-...++++-+.....+++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQ-SRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQ-SRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHH-hhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 46678888888888888887776521 111 2223444444333344455455566666655555554 4578999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1231 LSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
+..++.-...+|+.- +..+|+-. ..|.+.....++.+|.. +++++|.+.+.++.++
T Consensus 212 lNnLQst~~g~g~Vn--------------------~enVfKv~---d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVN--------------------QENVFKVC---DEPHPLLVKKMLQACLK-RNIDEALKILAELWKL 267 (333)
T ss_pred HHHHHHHhccccccc--------------------hhhhhhcc---CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHc
Confidence 988887765544321 12222222 24555666666665544 3566666666666655
Q ss_pred CCCCchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1311 EAQNSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
.-+. .-.+.+++......+-++.+|
T Consensus 268 gysp---~Dii~~~FRv~K~~~~~E~~r 292 (333)
T KOG0991|consen 268 GYSP---EDIITTLFRVVKNMDVAESLR 292 (333)
T ss_pred CCCH---HHHHHHHHHHHHhccHHHHHH
Confidence 4322 123344444444444444443
No 422
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.58 E-value=1.5e+03 Score=29.65 Aligned_cols=65 Identities=8% Similarity=0.003 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1226 LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1226 ~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
+.|.-..+...+.++.|..--...+.-+-+-|.-..+++||.+++..+.+....|..+-..++.-
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 44445555555555444444445555555666667777777777776655333344444444433
No 423
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.58 E-value=77 Score=37.80 Aligned_cols=64 Identities=11% Similarity=0.055 Sum_probs=46.6
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
-+.|+.++|..+|+....--+.++.+...+..-.-.+++.-+|...|-+++.+.|.++.+.+.-
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhh
Confidence 4678888888888876553344556666666666677788888899999999999887766543
No 424
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=27.21 E-value=6.8e+02 Score=25.63 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhC
Q 040435 822 AYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSG 901 (1991)
Q Consensus 822 ~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~ 901 (1991)
..++|..|-+.+...+-....++.-.+.+.--+|++++|..+.+.++.||...|-++-.. +.|....+..-+.+|...
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 345666666665554432222222222223334999999999999999999999888654 667777776667677653
Q ss_pred CCCCCCHHHHHH
Q 040435 902 FKNEPDGQSLVS 913 (1991)
Q Consensus 902 ~gv~Pd~~T~~~ 913 (1991)
-.|...+|..
T Consensus 98 --g~p~lq~Faa 107 (115)
T TIGR02508 98 --GDPRLQTFVA 107 (115)
T ss_pred --CCHHHHHHHH
Confidence 3454444443
No 425
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.11 E-value=1.2e+03 Score=28.39 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
+-....|..+|.+.+|.++.++...-.+.+...|..|+..+...|+--.+..-++++
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344567888999999999999988756678899999999999999977777666655
No 426
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.42 E-value=9.7e+02 Score=27.02 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=74.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHH---HHH--HHHHHH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVT-TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHY---SCM--VDMLAR 1259 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T-~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y---~~L--i~~l~r 1259 (1991)
+++.+..++|+.-|.++.+.|..--.+. -.-........|+...|...|.++-.+ .|-+... .-| ..+|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 4667777888888888877765432221 111222345778888888888877543 2222222 111 224556
Q ss_pred cCCHHHHHHHHHHCccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1260 AGELDIAIDLINQMPDN-LKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~-~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.|.+++....++-+... .+--...-.+|.-+-.+.|++..|...|+.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78888887777776542 233345666777777788888888888887766
No 427
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=26.42 E-value=1.3e+02 Score=38.64 Aligned_cols=119 Identities=17% Similarity=0.279 Sum_probs=60.4
Q ss_pred CcceEEEEccc-chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 365 SLYHYAIFSDN-VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 365 ~~~hi~~~~Dn-~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
..++|++++-| ..++.-++.|++++....+.+..-|.-|..+.... +++
T Consensus 93 ~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~------------------------------~vi 142 (434)
T PF03071_consen 93 PVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVA------------------------------EVI 142 (434)
T ss_dssp ----EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHH------------------------------HHH
T ss_pred CcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHH------------------------------HHH
Confidence 35778777777 66899999999998765445444444454322221 222
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC--CCeEEEeeCCEeEecCCchhhcc
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK--LEKILFLDDDIVVQKDLTPLWSV 518 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~--~dkvLyLD~Divv~~dl~~L~~~ 518 (1991)
+.... ...+++..+...........++ ..|..++.+||.-+-.+|.. +++||.|.+|+.+--|.=+.|+-
T Consensus 143 ~~y~~---~v~~i~~~~~~~i~~~~~~~~~--~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~ 214 (434)
T PF03071_consen 143 KSYGD---QVTYIQHPDFSPITIPPKEKKF--KGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSA 214 (434)
T ss_dssp HGGGG---GSEEEE-S--S-----TT-GGG--HHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHH
T ss_pred HHhhh---hheeeecCCcCCceeCcccccc--cchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHH
Confidence 22210 1111221111111100011111 13566788999999888864 89999999999999988666654
No 428
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=26.35 E-value=6.6e+02 Score=30.23 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=66.0
Q ss_pred chhhhHHHHhhc-----c-cccCCCeEEEeeCCEeEecCCc-hhhccCCCCCeeEeeccchhhhccccccccCCCccccC
Q 040435 479 LSMLNHLRFYLP-----E-VYPKLEKILFLDDDIVVQKDLT-PLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISE 551 (1991)
Q Consensus 479 ~s~~~y~Rl~ip-----~-llp~~dkvLyLD~Divv~~dl~-~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~ 551 (1991)
|+..+..|+-+- + ++-++|-+.++|+|+++.+++. |. | |..+|......-. ..-..+..-.+|.-.-
T Consensus 101 W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig~E~----L-g~lva~lHp~~y~-~~~~~fpYERrp~S~A 174 (271)
T cd02515 101 WQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPFGVET----L-GDSVAQLHPWWYG-KPRKQFPYERRPSSAA 174 (271)
T ss_pred CcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecCCHHH----h-hhhheecChhhhc-CCCCCCCCcCCCCccc
Confidence 344555555432 2 3345999999999999999996 22 2 2355555432111 0111222222333333
Q ss_pred CCCC--CCcccccceeEeehHHHHHhhHHHHHHHHHH-hchhccccccCCCCchhhhhccc--ccccccccccc
Q 040435 552 NFSP--NACGWAFGMNMFDLKEWRKRNITGIYHYWQD-ANEDRTLWKLGTLPPGLITFYNL--TYPLDRSWHVL 620 (1991)
Q Consensus 552 ~~~~--~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~-~~~~~~~~~~~dqd~~n~~f~~~--~~~L~~~wN~~ 620 (1991)
+++. .+-|+-.|+.==-..+..+ +++.++..+. ...+...-.+.|-.-+|-.|..+ ++.|+.+|..-
T Consensus 175 yIp~~eGdfYy~Ga~~GG~~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNkYf~~~Kp~KiLSPeY~w~ 246 (271)
T cd02515 175 YIPEGEGDFYYHGAVFGGSVEEVYR--LTRACHEGILADKANGIEARWHDESHLNKYFLLHKPTKVLSPEYLWD 246 (271)
T ss_pred cccCCCCCeEEeeeecCccHHHHHH--HHHHHHHHHHHHHhCCceEEeecHhHhHHHHhhCCCCeecChhhcCC
Confidence 4442 2335444444111222221 3333333332 22333323456667788776553 68889888643
No 429
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=25.25 E-value=43 Score=38.13 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.5
Q ss_pred hhcccccCCCeEEEeeCCEeEecCCch
Q 040435 488 YLPEVYPKLEKILFLDDDIVVQKDLTP 514 (1991)
Q Consensus 488 ~ip~llp~~dkvLyLD~Divv~~dl~~ 514 (1991)
.+..+||+.+.||+||+||.|.+.=..
T Consensus 34 vva~~L~~~~~vlflDaDigVvNp~~~ 60 (222)
T PF03314_consen 34 VVAKILPEYDWVLFLDADIGVVNPNRR 60 (222)
T ss_pred HHHHHhccCCEEEEEcCCceeecCccc
Confidence 467788999999999999999876543
No 430
>PRK15383 type III secretion system protein; Provisional
Probab=25.12 E-value=54 Score=37.50 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.4
Q ss_pred CeEEEeeCCEeEecCCchhhccC
Q 040435 497 EKILFLDDDIVVQKDLTPLWSVD 519 (1991)
Q Consensus 497 dkvLyLD~Divv~~dl~~L~~~d 519 (1991)
+-+||||+|||..+.|--|+.=|
T Consensus 220 ~GCIYLD~DMilT~KLG~ly~PD 242 (335)
T PRK15383 220 GGCIYLDADMLLTDKLGTLYLPD 242 (335)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 67999999999999999888654
No 431
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.00 E-value=1.6e+03 Score=31.85 Aligned_cols=126 Identities=13% Similarity=0.122 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Q 040435 774 SWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYV 853 (1991)
Q Consensus 774 s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~ya 853 (1991)
-|..|+--|...|..++|++++.+.....-.-|.. ..+.-..+.+.+.+.|-.. . .|+--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~-~----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAEN-L----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccc-h----hHHHHHh
Confidence 37889999999999999999999876521001100 0111122344444444221 1 2333444
Q ss_pred h----CCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 040435 854 D----ADMECARKLFDEMCE--RDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACT 919 (1991)
Q Consensus 854 k----g~~e~A~~vf~~m~~--~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~ 919 (1991)
. .+.+.+.++|-.-.. ....+=. -+-.|.......-++..++.+... .-.++..-.+.++..+.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHH
Confidence 4 356667777755110 0001111 123445566677777888887764 33455555566665554
No 432
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=24.40 E-value=98 Score=33.70 Aligned_cols=51 Identities=33% Similarity=0.491 Sum_probs=30.4
Q ss_pred cccchhccccccCCCChhHHH--HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhh
Q 040435 200 VTGKYSIWRRDFESPNTDSTL--KLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQ 257 (1991)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (1991)
--|+| |+.+|++-..++-. +.|...--+||.| |++ ++.-+.+|..++++-|
T Consensus 66 qSGkY--WK~eFe~Y~~~a~~Em~KLi~yk~~aKsy---Akk--KD~Ea~~L~~KLkeEq 118 (152)
T PF11500_consen 66 QSGKY--WKEEFESYHEKAEKEMEKLIKYKQLAKSY---AKK--KDAEAMRLAEKLKEEQ 118 (152)
T ss_pred cccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHH
Confidence 34999 99999764444332 3444445566666 333 3344557777777644
No 433
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.34 E-value=99 Score=35.79 Aligned_cols=61 Identities=28% Similarity=0.377 Sum_probs=47.1
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
++.+.|+.+.|.+++++..+-.+.....|-.+...--+.|+.+.|.+++++.++++|++..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456777888888888877644556778888888778888888888888888888887643
No 434
>PRK15382 non-LEE encoded effector protein NleB; Provisional
Probab=24.30 E-value=57 Score=37.36 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.4
Q ss_pred CeEEEeeCCEeEecCCchhhccC
Q 040435 497 EKILFLDDDIVVQKDLTPLWSVD 519 (1991)
Q Consensus 497 dkvLyLD~Divv~~dl~~L~~~d 519 (1991)
+-+||||+|||..+.|--|+.=|
T Consensus 212 ~GCIYLD~DMilT~KLG~ly~PD 234 (326)
T PRK15382 212 EGCIYLDADMIITDKLGVLYAPD 234 (326)
T ss_pred CceEEeecceeeecccccEEcCC
Confidence 67999999999999999888654
No 435
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=23.93 E-value=58 Score=34.57 Aligned_cols=56 Identities=9% Similarity=0.148 Sum_probs=34.5
Q ss_pred cchhhhhhhhhcccccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHh
Q 040435 660 WSKYVILWSLRLRTWNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACS 718 (1991)
Q Consensus 660 W~~yv~~d~p~l~~cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~ 718 (1991)
+.+|-.-..-.+-.|----.....-|.-..|-.+|++|+..|-.|+ .+..||+.|.
T Consensus 84 FFRy~s~skiIv~aWvNDe~tlR~ygsk~DaY~VF~kML~~G~pPd---dW~~Ll~~a~ 139 (140)
T PF11663_consen 84 FFRYDSESKIIVYAWVNDEQTLRAYGSKTDAYAVFRKMLERGNPPD---DWDALLKEAK 139 (140)
T ss_pred EEEecCccCEEEEEEeCCCcchhhhccCCcHHHHHHHHHhCCCCCc---cHHHHHHHhc
Confidence 3345333333344554422333445666789999999999997553 4778887663
No 436
>PF13323 HPIH: N-terminal domain with HPIH motif
Probab=23.86 E-value=35 Score=37.34 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=33.4
Q ss_pred HHHHHHHHHhchhhhccchHHHHHHHHHHHHhhhcccC
Q 040435 1719 GYMLSFYRTYGRWVAANPAFVLCMSLAIGFVLCLGVIR 1756 (1991)
Q Consensus 1719 ~~l~~~F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~ 1756 (1991)
+++.+.+..+.++.++||..||++.++++..-=+|++-
T Consensus 2 k~vt~~l~~lsr~aa~hPIHtIvv~aLLAS~aYlsvle 39 (153)
T PF13323_consen 2 KQVTKPLQALSRFAARHPIHTIVVTALLASTAYLSVLE 39 (153)
T ss_pred ccccHHHHHHHHHHccCCCeehHHHHHHHHHHHHHHHH
Confidence 35567888999999999999999999999998888875
No 437
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=23.83 E-value=1.7e+02 Score=41.83 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=50.6
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHhhhcccCccc-cCCCcccccCCCChhhhhhhhhhhcCCCCCceEEEEEEe
Q 040435 1725 YRTYGRWVAANPAFVLCMSLAIGFVLCLGVIRFKV-ETRPEKLWVGPGSRAAGEKQFFDSHLAPFYRIEQLILAT 1798 (1991)
Q Consensus 1725 F~~~G~~va~~P~~~i~~~llv~~~l~~Gl~~~~~-etdp~~Lw~p~~S~a~~Ek~~fd~~Fgpf~R~~qvii~~ 1798 (1991)
++++|++++||||.+|++.+++++++..=+..+.. .+|--..=.|+++++-.-.+.-.+.|....+..-++++-
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~ 77 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSVALLPDDAPSLVAMKLIGQAFNESDSSSAAIVVL 77 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcccccCCCCchHHHHHHHHhhhccCCCCCceEEEEE
Confidence 45699999999999999988888888765555432 123333335777777777666667776655555555554
No 438
>PRK15384 type III secretion system protein; Provisional
Probab=23.79 E-value=55 Score=37.42 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.1
Q ss_pred CeEEEeeCCEeEecCCchhhccC
Q 040435 497 EKILFLDDDIVVQKDLTPLWSVD 519 (1991)
Q Consensus 497 dkvLyLD~Divv~~dl~~L~~~d 519 (1991)
+-+||||+|||..+.|--|+.=|
T Consensus 217 ~GCIYLDaDMilT~KLG~ly~PD 239 (336)
T PRK15384 217 SGCIYLDADMIITEKLGGIYIPD 239 (336)
T ss_pred CceEEeeccceeecccccEEcCC
Confidence 55999999999999999888654
No 439
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.61 E-value=1.4e+03 Score=27.85 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=13.8
Q ss_pred HHHHHHHHHhc-C-CCchhhhhHHHHhh
Q 040435 1060 VELAWKLFNDV-K-KPDVVLWSTMIAGF 1085 (1991)
Q Consensus 1060 l~~A~~lf~~m-~-~~d~~syn~LI~~y 1085 (1991)
++.+.++...+ . +.+...|..++..+
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 45566666666 3 35666666655443
No 440
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=23.36 E-value=7.6e+02 Score=25.57 Aligned_cols=79 Identities=10% Similarity=-0.001 Sum_probs=52.9
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040435 721 SYIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARV 800 (1991)
Q Consensus 721 ~~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~ 800 (1991)
...+|..|.+-+...+- ....+.-..+..+.+.|++++|...=.....||...|-+|-.+ +.|-...+...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 35677777777776664 3333444455567789999999666566778999999888764 67888888888888876
Q ss_pred cC
Q 040435 801 AG 802 (1991)
Q Consensus 801 ~g 802 (1991)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 441
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.19 E-value=6e+02 Score=35.99 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhcCccc-----hHHHHHHHHHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhh
Q 040435 214 PNTDSTLKLMRDQIILAKAYAHVAKSKNESS-----LYNSLMKHCKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAK 288 (1991)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1991)
.|.|.|+-+-+--|..|.-..++|++-+..+ -+.++...+.+.+++.++|.. + -..+..-++..+++|.+++
T Consensus 1528 ~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~-a--i~~a~~~~~~a~~~l~kv~ 1604 (1758)
T KOG0994|consen 1528 PNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQD-A--IQGADRDIRLAQQLLAKVQ 1604 (1758)
T ss_pred ccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHhhHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555444431 122333344444444444221 0 1122233566677777777
Q ss_pred hccCChhHHHHHHHHHHHHhHHHHHHHHhhhHHH
Q 040435 289 DQLYDCPTVQRKFRAMIQSTEGTVTALKRKSSFL 322 (1991)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (1991)
+..+-....+.-.-..|-.+|..+..+|.+-+-+
T Consensus 1605 ~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qn 1638 (1758)
T KOG0994|consen 1605 EETAAAEKLATSATQQLGELETRMEELKHKAAQN 1638 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777666666666666666666666554443
No 442
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=23.15 E-value=8.6e+02 Score=26.57 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=36.9
Q ss_pred CCHhHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1174 KNIVSWSAMVAAYGMNGL-AHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~~G~-~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
.+-.+|++++.+.++..- ---+..+|+-|++.+.+++..-|..++.+|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888887766554 334677888888777888888888888887665
No 443
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.13 E-value=7.5e+02 Score=28.30 Aligned_cols=111 Identities=15% Similarity=0.209 Sum_probs=61.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHH--HHHhhhhhcccCCCCCCCchHHHHHHHHHHHHHHhhhcc
Q 040435 214 PNTDSTLKLMRDQIILAKAYAHVAKSKNESSLYNSLMKH--CKESQRAIGDANSDAELPSSALNQAQAMGHVLSIAKDQL 291 (1991)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1991)
...+|+.=+|++||.+++.-.+++|+-..-....+|.+- |...-|.++.- .-+.-..+.++.++=++-
T Consensus 82 AqlnSv~M~l~eqla~~r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkE----------mmKaGIIEEmvdet~esv 151 (227)
T KOG3229|consen 82 AQLNSVSMQLKEQLATLRVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKE----------MMKAGIIEEMVDETMESV 151 (227)
T ss_pred HHHhhHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhcc
Confidence 567889999999999999999988887665444444321 11111112220 011122334444444444
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHhhccCCCccccchhhhhHHHhhcCCC
Q 040435 292 YDCPTVQRKFRAMIQSTEGTVTALKRKSSFLIQLAAKIVPRPLHCLPLQLAADYYLQGHH 351 (1991)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~cl~~~l~~~~~~~~~~ 351 (1991)
-|... |....+|+++. .+++++..+.|+ ++.--+.++..+|..
T Consensus 152 ~d~ee-------meEe~deEVdk------IL~~it~~~~~~----~p~a~~~~~~~~~~~ 194 (227)
T KOG3229|consen 152 EDSEE-------MEEEADEEVDK------ILTEITGEKAGE----APLAVTATLAAVPAE 194 (227)
T ss_pred cchhh-------HHHHHHHHHHH------HHHHHhcccccc----CCcchHHHHhcCccc
Confidence 45443 55566666654 567777766655 344445555555443
No 444
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.08 E-value=1.1e+02 Score=22.51 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLIN 1271 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~ 1271 (1991)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666777777766654
No 445
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=22.99 E-value=1e+02 Score=34.52 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1297 TELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1297 ~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++|+.-+++++.++|+...++..++++|...|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3456666888999999999999999999999876
No 446
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=22.63 E-value=2.5e+02 Score=32.85 Aligned_cols=105 Identities=13% Similarity=0.169 Sum_probs=68.6
Q ss_pred CChhHHHHHHHHHHHHHHH--HHHHHHhcCccchHHHHHHHHHHhhh----hhcccCCCCCCCchHHHHHHHHHHHHHHh
Q 040435 214 PNTDSTLKLMRDQIILAKA--YAHVAKSKNESSLYNSLMKHCKESQR----AIGDANSDAELPSSALNQAQAMGHVLSIA 287 (1991)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1991)
...+.+++.|+|+|.=|+. --.+|..+....=+.++...+.+-+. +|.. -+.+|-..++..-+...+.+..-
T Consensus 27 ~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~--G~EdLAr~Al~~k~~~~~~~~~l 104 (219)
T TIGR02977 27 KMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK--GREDLARAALIEKQKAQELAEAL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888876665 22334444444444555555555222 3332 23447777777766667777777
Q ss_pred hhccCChhHHHHHHHHHHHHhHHHHHHHHhhhH
Q 040435 288 KDQLYDCPTVQRKFRAMIQSTEGTVTALKRKSS 320 (1991)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (1991)
+.++-..+..+.+|+..|..++.++..+|.+-.
T Consensus 105 ~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 105 ERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666778899999999999999988776544
No 447
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.57 E-value=72 Score=33.96 Aligned_cols=19 Identities=21% Similarity=0.496 Sum_probs=8.6
Q ss_pred cccCCCChhhh--hhhhhhhc
Q 040435 1766 LWVGPGSRAAG--EKQFFDSH 1784 (1991)
Q Consensus 1766 Lw~p~~S~a~~--Ek~~fd~~ 1784 (1991)
-++|+.+.... ..-|||.+
T Consensus 61 ~~~P~y~~~~~~~~~g~Yd~~ 81 (130)
T PF12273_consen 61 DYVPPYTETANDNDPGYYDQQ 81 (130)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
Confidence 45555444333 24455553
No 448
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.52 E-value=6.3e+02 Score=31.93 Aligned_cols=60 Identities=17% Similarity=0.089 Sum_probs=41.0
Q ss_pred CHHHHHHHH---HHHHHcCChhHHHHHHHHHHhcCCC-CchHHHHHHHHHHhC-CCchhHHHHHH
Q 040435 1280 TASAWGALL---SACRSYGNTELGAGATSRILELEAQ-NSAGYLLASSMYAAG-GLWVESSGTRL 1339 (1991)
Q Consensus 1280 d~~~~~~Ll---~a~~~~g~~e~A~~~~e~llel~P~-~~~~yvlL~~lya~~-G~~~ea~~vr~ 1339 (1991)
|...|.+|. ....+.|-+..|.+..+-++.++|. ||-.-.+....|+-. +.++--..+..
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~ 163 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSE 163 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHH
Confidence 555565554 4566788899999999999999998 777666667766654 44443334333
No 449
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=21.28 E-value=1.7e+03 Score=28.08 Aligned_cols=146 Identities=14% Similarity=0.119 Sum_probs=83.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhHHh-----cCCCCCHHHHHHHHH
Q 040435 1182 MVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS-HGGLVEEGLSFFNSMVQD-----HGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1182 LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~-~~G~~e~A~~i~~~M~~~-----~gi~P~~~~y~~Li~ 1255 (1991)
-|..+.+.|.+..|+++.+-+......-|.......|+-|+ +++.++--+++.+..... ...-|+. .|+.-+
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~-a~S~aL- 186 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF-AFSIAL- 186 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH-HHHHHH-
Confidence 35678899999999999999988664446777777777765 677887777777765331 1123433 233222
Q ss_pred HHHHcCCH---------------HHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHH-HHHHH-HhcCCCCchHH
Q 040435 1256 MLARAGEL---------------DIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAG-ATSRI-LELEAQNSAGY 1318 (1991)
Q Consensus 1256 ~l~r~G~~---------------eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~-~~e~l-lel~P~~~~~y 1318 (1991)
++.+.++- ++|.+.+.++... -+.+...|+..+...++..-... .+... ...++ .....
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~---fP~vl~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 262 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR---FPWVLVPLLDKLGISPDSSVSNHPHFSPSSWSSEP-PSDSL 262 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHH---hHHHHHHHHHHhccccchhhhcCCCCcccccccCC-chhHH
Confidence 33344444 7888888777543 23566677776633322221100 00100 01111 12356
Q ss_pred HHHHHHHHhC--CCchh
Q 040435 1319 LLASSMYAAG--GLWVE 1333 (1991)
Q Consensus 1319 vlL~~lya~~--G~~~e 1333 (1991)
.++..+|... ..|.+
T Consensus 263 ~ll~~lYv~R~~~LWk~ 279 (360)
T PF04910_consen 263 KLLTELYVERSKDLWKE 279 (360)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 7778888764 56744
No 450
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=20.71 E-value=4.1e+02 Score=28.66 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHCccCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1244 EPALEHYSCMVDMLARAGEL---DIAIDLINQMPDNLKA--TASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1244 ~P~~~~y~~Li~~l~r~G~~---eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.++..+--.+..++.+..+. .+...++++..+.-.| ......-|.-+|.+.|+++.+.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 45555556666667666543 4455566655431122 2233344556788889999999999999999998754
No 451
>PHA02875 ankyrin repeat protein; Provisional
Probab=20.71 E-value=9.5e+02 Score=30.63 Aligned_cols=78 Identities=17% Similarity=0.047 Sum_probs=33.3
Q ss_pred HHHcCChHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcC
Q 040435 882 YVQSAEAFSGLRLFRQMVSGFKNEPDGQS--LVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLF--VGNSLIDMYAKCK 957 (1991)
Q Consensus 882 ~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T--~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~--v~naLI~~y~k~G 957 (1991)
.++.|+.+-+..++ +. |..|+... -.+.|..++..|+.+. ...+++.|..++.. .....+...++.|
T Consensus 9 A~~~g~~~iv~~Ll----~~-g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDIARRLL----DI-GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHHHHHHH----HC-CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456554433333 22 55555422 2334444445555543 33444455444321 1112233344455
Q ss_pred ChHHHHHHhcc
Q 040435 958 DTDSAFKVFSE 968 (1991)
Q Consensus 958 ~~e~A~~lf~~ 968 (1991)
+.+.+..+++.
T Consensus 80 ~~~~v~~Ll~~ 90 (413)
T PHA02875 80 DVKAVEELLDL 90 (413)
T ss_pred CHHHHHHHHHc
Confidence 55555555443
No 452
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=20.61 E-value=2.4e+02 Score=34.16 Aligned_cols=100 Identities=16% Similarity=0.248 Sum_probs=62.4
Q ss_pred CCCCCCcceEEEEc--ccch-hhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhh
Q 040435 360 KFEDPSLYHYAIFS--DNVL-ATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLN 436 (1991)
Q Consensus 360 ~~~~~~~~hi~~~~--Dn~~-~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~ 436 (1991)
..+.+..++++... |+.+ -+-.++.|+-++++ ....+++|++ +++ +|-.+.
T Consensus 41 ~~~~~k~IW~~W~QG~e~aP~~Vk~ci~s~~k~~~---~~~Vi~lt~~----Ni~-------------------~Yv~~P 94 (276)
T PF05704_consen 41 PETNEKIIWVCWWQGEENAPEIVKKCINSWRKNAP---DYEVILLTED----NIK-------------------DYVDIP 94 (276)
T ss_pred cCCCCCcEEEEECCCccccCHHHHHHHHHHHHHCC---CCeEEEEChH----HHH-------------------HHcCCc
Confidence 33455569999864 6666 46889999999983 3677878843 233 221111
Q ss_pred hhhhhHHHHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhh
Q 040435 437 SSYCSVLRQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLW 516 (1991)
Q Consensus 437 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~ 516 (1991)
+ + +.+.+....+ .+.+ ..-++|+.+-.-.-. ++||+++.+.++|.+.+
T Consensus 95 ~-~--i~~k~~~g~i-----------------------~~a~--~SDilR~~LL~~yGG----vWiDatv~~t~~l~~~~ 142 (276)
T PF05704_consen 95 D-F--ILEKYEKGKI-----------------------SPAH--FSDILRLALLYKYGG----VWIDATVYLTKPLDDEI 142 (276)
T ss_pred h-h--HHHHHHcCCC-----------------------chhH--HHHHHHHHHHHHcCc----EEeCCceEECCchhHHH
Confidence 1 0 1222211110 0111 266889998887777 99999999999998765
Q ss_pred c
Q 040435 517 S 517 (1991)
Q Consensus 517 ~ 517 (1991)
.
T Consensus 143 ~ 143 (276)
T PF05704_consen 143 F 143 (276)
T ss_pred h
Confidence 5
No 453
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=20.48 E-value=1.4e+03 Score=26.77 Aligned_cols=126 Identities=14% Similarity=0.158 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHC---ccCCCCCHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQM---PDNLKATASAWGALL 1288 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m---~~~~~pd~~~~~~Ll 1288 (1991)
|....++.+.+.+.+.+|+...+.-++ -+| +...-..++++|+-+|++++|..-++-. ..+..+....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 445567778889999999999887765 456 4566777899999999999998766544 333455677888888
Q ss_pred HHHHHcCChhHHHHHHHHHHh--cCCCC----chHH--HHHHHHHHhCC-CchhHHHHHHHHHHcCCcccCcE
Q 040435 1289 SACRSYGNTELGAGATSRILE--LEAQN----SAGY--LLASSMYAAGG-LWVESSGTRLLAKERGVKVVAGN 1352 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~lle--l~P~~----~~~y--vlL~~lya~~G-~~~ea~~vr~~m~~~gi~k~~g~ 1352 (1991)
.+-... ...++ ..|.- +.-+ .++.++-.+.+ --+.+.++|+.-.+.+- -.+|+
T Consensus 80 r~ea~R----------~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~-~~iG~ 141 (273)
T COG4455 80 RCEAAR----------NEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAP-VPIGH 141 (273)
T ss_pred HHHHHH----------HHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCC-CCCcc
Confidence 653321 22232 23322 1222 33444444444 44445667776655553 34555
No 454
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=20.03 E-value=68 Score=32.48 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=28.0
Q ss_pred chhhhHHHHhhcccccCCCeEEEeeCCEeEecCC-chhh
Q 040435 479 LSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDL-TPLW 516 (1991)
Q Consensus 479 ~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl-~~L~ 516 (1991)
....-++|+.+.-..-. ||+|.|+++.+++ +.+-
T Consensus 63 ~~~sD~~R~~~L~~~GG----iY~D~D~~~~rpl~~~~~ 97 (103)
T PF04488_consen 63 AHKSDLLRYLVLYKYGG----IYLDLDVICLRPLDDPWL 97 (103)
T ss_pred HHHHHHHHHHHHHHcCc----EEEeCccccCcchhhhhh
Confidence 34578999999887777 9999999999999 5543
Done!