Query 040435
Match_columns 1991
No_of_seqs 1201 out of 6053
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qnt_A Niemann-PICK C1-like pr 100.0 2.5E-64 8.6E-69 572.1 15.0 234 1403-1644 7-264 (265)
2 3gkj_A Niemann-PICK C1 protein 100.0 1.5E-62 5.1E-67 548.3 9.7 213 1407-1624 2-230 (232)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-35 5.2E-40 392.8 41.9 498 750-1327 62-596 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.6E-34 8.8E-39 381.0 46.9 480 852-1343 63-578 (597)
5 3tzt_A Glycosyl transferase fa 100.0 3.9E-37 1.3E-41 365.6 15.2 258 366-671 5-275 (276)
6 1g9r_A Glycosyl transferase; a 100.0 4.8E-33 1.6E-37 337.6 13.2 248 367-663 1-267 (311)
7 4g26_A Pentatricopeptide repea 99.9 8.5E-23 2.9E-27 263.6 22.9 195 1063-1258 9-221 (501)
8 4g26_A Pentatricopeptide repea 99.9 2E-22 6.9E-27 260.1 19.9 210 993-1224 9-223 (501)
9 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-19 3.7E-24 227.3 41.9 373 915-1330 6-388 (388)
10 1w3b_A UDP-N-acetylglucosamine 99.8 1.2E-18 3.9E-23 218.0 39.5 351 982-1343 7-367 (388)
11 1ll2_A Glycogenin-1; protein-s 99.8 7E-21 2.4E-25 231.3 13.0 215 366-655 4-227 (333)
12 2y4t_A DNAJ homolog subfamily 99.8 2.6E-18 9E-23 218.6 33.3 347 974-1351 26-413 (450)
13 2gw1_A Mitochondrial precursor 99.8 1.1E-17 3.7E-22 216.3 34.9 442 873-1322 7-490 (514)
14 3u2u_A Glycogenin-1, GN-1, GN1 99.8 1.5E-19 5.1E-24 210.9 13.8 209 369-653 8-226 (263)
15 2gw1_A Mitochondrial precursor 99.8 3.9E-17 1.3E-21 211.0 31.0 425 910-1343 8-477 (514)
16 3fp2_A TPR repeat-containing p 99.7 1.6E-15 5.3E-20 197.5 37.2 432 872-1319 25-500 (537)
17 2y4t_A DNAJ homolog subfamily 99.7 4.5E-15 1.5E-19 188.7 37.1 360 907-1333 25-443 (450)
18 3fp2_A TPR repeat-containing p 99.7 6.5E-15 2.2E-19 191.6 38.5 432 773-1276 26-491 (537)
19 1xi4_A Clathrin heavy chain; a 99.7 9.3E-12 3.2E-16 168.4 60.6 549 737-1336 721-1376(1630)
20 3ieg_A DNAJ homolog subfamily 99.6 1.8E-13 6.3E-18 167.0 35.0 325 973-1328 2-353 (359)
21 1xi4_A Clathrin heavy chain; a 99.6 9.3E-11 3.2E-15 158.8 60.0 528 742-1336 986-1584(1630)
22 3hym_B Cell division cycle pro 99.6 1.5E-13 5.2E-18 166.0 30.3 289 1040-1331 18-321 (330)
23 3ieg_A DNAJ homolog subfamily 99.6 6.9E-13 2.4E-17 161.9 35.3 305 1010-1343 4-334 (359)
24 1fch_A Peroxisomal targeting s 99.5 4.6E-13 1.6E-17 165.0 27.1 281 1054-1339 35-354 (368)
25 2ooe_A Cleavage stimulation fa 99.5 2.2E-11 7.7E-16 159.0 42.5 394 942-1344 12-492 (530)
26 1b89_A Protein (clathrin heavy 99.5 2.8E-13 9.6E-18 167.5 21.3 321 955-1312 15-343 (449)
27 1b89_A Protein (clathrin heavy 99.5 7.8E-13 2.7E-17 163.6 25.0 281 753-1066 15-304 (449)
28 3hym_B Cell division cycle pro 99.5 2.8E-12 9.7E-17 154.8 28.8 261 1073-1339 20-294 (330)
29 2xm6_A Protein corresponding t 99.5 4.9E-11 1.7E-15 154.2 41.0 365 942-1327 38-452 (490)
30 2ooe_A Cleavage stimulation fa 99.5 3.9E-11 1.3E-15 156.8 39.9 419 840-1314 11-496 (530)
31 3mkr_A Coatomer subunit epsilo 99.5 3.2E-12 1.1E-16 153.8 26.1 242 1050-1335 40-285 (291)
32 4eqf_A PEX5-related protein; a 99.5 1.3E-12 4.4E-17 161.4 23.2 261 1074-1339 64-351 (365)
33 3spa_A Mtrpol, DNA-directed RN 99.5 8.7E-14 3E-18 183.1 11.1 130 1139-1269 121-258 (1134)
34 3cv0_A Peroxisome targeting si 99.4 6E-12 2.1E-16 151.7 25.6 253 1081-1339 27-310 (327)
35 1fch_A Peroxisomal targeting s 99.4 4.3E-12 1.5E-16 156.3 21.8 301 983-1309 34-358 (368)
36 3spa_A Mtrpol, DNA-directed RN 99.4 1.6E-13 5.6E-18 180.5 8.8 134 734-867 120-262 (1134)
37 2xm6_A Protein corresponding t 99.4 1.4E-09 4.7E-14 140.6 45.0 352 971-1345 36-433 (490)
38 4eqf_A PEX5-related protein; a 99.4 1E-11 3.4E-16 153.4 22.7 230 1110-1342 65-308 (365)
39 3mkr_A Coatomer subunit epsilo 99.4 1.4E-11 4.7E-16 148.2 22.8 192 1142-1342 62-262 (291)
40 4g1t_A Interferon-induced prot 99.3 9.1E-11 3.1E-15 150.1 27.6 381 908-1321 51-470 (472)
41 3cv0_A Peroxisome targeting si 99.3 1.9E-11 6.7E-16 147.2 19.9 271 1014-1313 26-318 (327)
42 4g1t_A Interferon-induced prot 99.3 4.1E-10 1.4E-14 144.0 32.1 358 943-1345 51-460 (472)
43 3uq3_A Heat shock protein STI1 99.3 1.1E-10 3.9E-15 135.2 23.1 221 1077-1311 7-237 (258)
44 3uq3_A Heat shock protein STI1 99.3 2.9E-10 1E-14 131.7 24.8 217 1111-1341 6-233 (258)
45 2pl2_A Hypothetical conserved 99.3 1.4E-10 4.9E-15 132.8 20.3 193 1142-1339 2-209 (217)
46 2vq2_A PILW, putative fimbrial 99.2 1.6E-09 5.6E-14 122.6 24.1 198 1144-1343 7-210 (225)
47 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.5E-10 1.2E-14 132.9 19.1 243 1085-1337 15-268 (275)
48 2ho1_A Type 4 fimbrial biogene 99.2 3.3E-09 1.1E-13 123.1 26.5 207 1075-1320 37-248 (252)
49 2ho1_A Type 4 fimbrial biogene 99.2 1.5E-09 5.2E-14 125.9 23.1 198 1145-1344 37-238 (252)
50 2q7f_A YRRB protein; TPR, prot 99.1 7.2E-10 2.5E-14 127.5 19.2 216 1074-1328 22-240 (243)
51 2vq2_A PILW, putative fimbrial 99.1 5.2E-09 1.8E-13 118.4 25.1 209 1074-1321 7-222 (225)
52 2q7f_A YRRB protein; TPR, prot 99.1 1.2E-09 4.3E-14 125.5 19.9 197 1144-1343 22-221 (243)
53 3u4t_A TPR repeat-containing p 99.1 1E-09 3.4E-14 129.0 19.4 245 1048-1330 7-270 (272)
54 2h6f_A Protein farnesyltransfe 99.1 4E-09 1.4E-13 131.5 22.0 246 1075-1328 97-366 (382)
55 4e6h_A MRNA 3'-END-processing 99.0 8.3E-07 2.8E-11 117.9 44.4 448 829-1317 54-577 (679)
56 1ouv_A Conserved hypothetical 99.0 4.5E-08 1.6E-12 115.4 29.2 226 1076-1316 7-257 (273)
57 3u4t_A TPR repeat-containing p 99.0 1.8E-08 6.3E-13 118.1 24.9 244 1011-1293 5-267 (272)
58 4a1s_A PINS, partner of inscut 99.0 4.3E-09 1.5E-13 131.8 20.1 260 1049-1339 53-367 (411)
59 3sf4_A G-protein-signaling mod 99.0 8.6E-09 3E-13 128.1 22.4 95 1043-1137 8-114 (406)
60 3ro2_A PINS homolog, G-protein 99.0 6.3E-09 2.2E-13 124.9 20.3 197 1145-1341 83-329 (338)
61 3sf4_A G-protein-signaling mod 99.0 2.5E-09 8.5E-14 133.0 16.9 296 1007-1333 7-365 (406)
62 1xnf_A Lipoprotein NLPI; TPR, 99.0 5.1E-09 1.8E-13 122.8 18.1 217 1122-1343 17-243 (275)
63 1ouv_A Conserved hypothetical 99.0 1.4E-07 4.7E-12 111.3 29.8 223 1109-1345 5-252 (273)
64 3vtx_A MAMA; tetratricopeptide 99.0 2.6E-08 8.8E-13 109.9 22.0 165 1145-1313 5-173 (184)
65 3vtx_A MAMA; tetratricopeptide 99.0 1.4E-08 4.6E-13 112.1 19.5 163 1175-1341 4-167 (184)
66 4abn_A Tetratricopeptide repea 99.0 6E-09 2.1E-13 134.1 18.2 190 1143-1337 100-314 (474)
67 3e4b_A ALGK; tetratricopeptide 98.9 4.4E-08 1.5E-12 125.2 25.2 352 918-1327 13-402 (452)
68 2h6f_A Protein farnesyltransfe 98.9 1.3E-08 4.3E-13 126.9 19.4 224 1112-1341 99-344 (382)
69 2pl2_A Hypothetical conserved 98.9 2.2E-08 7.7E-13 114.4 19.3 193 1074-1307 4-211 (217)
70 4a1s_A PINS, partner of inscut 98.9 8.7E-09 3E-13 128.9 17.1 273 1011-1313 50-375 (411)
71 2ond_A Cleavage stimulation fa 98.9 1.6E-07 5.6E-12 113.3 27.5 220 1092-1316 33-276 (308)
72 3e4b_A ALGK; tetratricopeptide 98.9 8.6E-08 2.9E-12 122.5 25.5 169 1147-1327 143-330 (452)
73 4gyw_A UDP-N-acetylglucosamine 98.9 2.2E-08 7.5E-13 134.5 20.6 161 1175-1340 8-170 (723)
74 3ro2_A PINS homolog, G-protein 98.9 2.1E-08 7.3E-13 120.2 17.6 266 1017-1313 13-335 (338)
75 3nf1_A KLC 1, kinesin light ch 98.9 7.6E-09 2.6E-13 123.4 13.2 167 1146-1312 112-309 (311)
76 3as5_A MAMA; tetratricopeptide 98.9 6.7E-08 2.3E-12 105.3 19.4 166 1147-1315 10-178 (186)
77 3as5_A MAMA; tetratricopeptide 98.9 7E-08 2.4E-12 105.1 19.5 162 1177-1342 9-171 (186)
78 4e6h_A MRNA 3'-END-processing 98.8 9.5E-06 3.3E-10 107.8 42.1 432 770-1257 64-584 (679)
79 3nf1_A KLC 1, kinesin light ch 98.8 2E-08 6.7E-13 119.8 13.4 239 1074-1340 26-303 (311)
80 4i17_A Hypothetical protein; T 98.8 1.5E-07 5.1E-12 107.7 20.0 206 1110-1327 7-226 (228)
81 2ond_A Cleavage stimulation fa 98.7 5.5E-07 1.9E-11 108.6 23.9 212 1127-1344 33-270 (308)
82 3ulq_A Response regulator aspa 98.7 2.4E-07 8.2E-12 115.2 20.9 227 1083-1310 111-368 (383)
83 4abn_A Tetratricopeptide repea 98.7 1.2E-07 4.2E-12 121.8 16.3 179 1160-1342 83-285 (474)
84 1hz4_A MALT regulatory protein 98.7 6.3E-06 2.2E-10 101.7 31.0 222 1119-1340 62-318 (373)
85 4i17_A Hypothetical protein; T 98.7 4E-07 1.4E-11 104.2 18.6 153 1176-1331 7-169 (228)
86 3ulq_A Response regulator aspa 98.6 3.8E-07 1.3E-11 113.4 18.5 222 1118-1340 111-364 (383)
87 4gyw_A UDP-N-acetylglucosamine 98.6 2.8E-07 9.4E-12 123.8 17.9 165 1144-1313 8-177 (723)
88 2fo7_A Synthetic consensus TPR 98.5 1.7E-06 5.9E-11 88.3 16.5 133 1178-1313 3-135 (136)
89 3q15_A PSP28, response regulat 98.5 2.1E-06 7.3E-11 106.5 20.4 217 1122-1339 113-360 (378)
90 3q15_A PSP28, response regulat 98.5 6.9E-06 2.3E-10 101.9 25.0 228 1082-1311 108-366 (378)
91 4ga2_A E3 SUMO-protein ligase 98.5 1.7E-07 5.7E-12 100.6 8.6 141 1185-1330 6-149 (150)
92 3edt_B KLC 2, kinesin light ch 98.5 6.6E-07 2.3E-11 104.6 14.1 221 1121-1341 12-278 (283)
93 2fo7_A Synthetic consensus TPR 98.4 4E-06 1.4E-10 85.5 16.1 129 1213-1343 3-131 (136)
94 1qqe_A Vesicular transport pro 98.4 4.4E-06 1.5E-10 99.9 18.7 170 1146-1316 78-275 (292)
95 2pzi_A Probable serine/threoni 98.4 7.4E-07 2.5E-11 119.9 13.0 150 1176-1330 433-583 (681)
96 3edt_B KLC 2, kinesin light ch 98.4 3.9E-06 1.3E-10 97.9 17.5 166 1145-1310 85-281 (283)
97 3qky_A Outer membrane assembly 98.4 5.2E-06 1.8E-10 97.1 18.4 189 1145-1333 15-250 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 98.4 1.1E-05 3.6E-10 92.5 20.5 179 1148-1346 7-215 (225)
99 1hz4_A MALT regulatory protein 98.4 7.7E-05 2.6E-09 91.8 29.6 128 1148-1275 177-321 (373)
100 3qou_A Protein YBBN; thioredox 98.4 4.5E-06 1.6E-10 99.6 17.5 171 1162-1337 103-277 (287)
101 1qqe_A Vesicular transport pro 98.3 3.6E-06 1.2E-10 100.7 15.9 187 1152-1338 44-263 (292)
102 3qky_A Outer membrane assembly 98.3 7.7E-06 2.6E-10 95.6 17.4 169 1173-1343 12-223 (261)
103 3mv2_B Coatomer subunit epsilo 98.3 5.5E-05 1.9E-09 90.1 23.7 163 1147-1316 102-288 (310)
104 2vsy_A XCC0866; transferase, g 98.3 1E-05 3.4E-10 106.4 18.4 161 1158-1322 2-169 (568)
105 3mv2_B Coatomer subunit epsilo 98.2 4.1E-05 1.4E-09 91.2 20.2 175 1164-1344 85-282 (310)
106 2vsy_A XCC0866; transferase, g 98.2 1.1E-05 3.6E-10 106.2 16.7 150 1189-1342 2-155 (568)
107 2pzi_A Probable serine/threoni 98.2 1.6E-05 5.3E-10 107.0 18.0 169 1144-1318 432-610 (681)
108 2r5s_A Uncharacterized protein 98.2 6.4E-06 2.2E-10 90.3 11.7 73 1266-1338 93-167 (176)
109 4gco_A Protein STI-1; structur 98.2 1.5E-05 5E-10 82.6 13.6 109 1213-1324 15-124 (126)
110 3urz_A Uncharacterized protein 98.2 2E-05 7E-10 89.0 15.7 157 1154-1315 13-191 (208)
111 1na0_A Designed protein CTPR3; 98.1 2.9E-05 1E-09 78.0 14.9 117 1211-1329 9-125 (125)
112 4ga2_A E3 SUMO-protein ligase 98.1 2.5E-06 8.4E-11 91.3 6.9 115 1220-1337 6-121 (150)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.1 5.3E-05 1.8E-09 85.0 17.9 130 1179-1315 9-155 (213)
114 2uy1_A Cleavage stimulation fa 98.1 0.0011 3.9E-08 85.2 32.4 368 885-1309 7-412 (493)
115 3gyz_A Chaperone protein IPGC; 98.1 1.2E-05 4.1E-10 86.3 11.4 100 1242-1341 30-130 (151)
116 2vyi_A SGTA protein; chaperone 98.1 3.7E-05 1.3E-09 78.0 14.4 118 1211-1331 12-130 (131)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.0 4.8E-05 1.6E-09 85.4 15.7 127 1213-1344 8-150 (213)
118 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.00011 3.8E-09 83.9 18.0 185 1111-1316 5-219 (225)
119 2lni_A Stress-induced-phosphop 98.0 3.4E-05 1.2E-09 78.9 12.2 118 1210-1330 15-133 (133)
120 2r5s_A Uncharacterized protein 98.0 5.8E-05 2E-09 82.6 14.6 156 1148-1309 9-172 (176)
121 3dra_A Protein farnesyltransfe 98.0 0.0009 3.1E-08 80.2 26.0 160 1159-1322 124-300 (306)
122 2vgx_A Chaperone SYCD; alterna 98.0 1.5E-05 5.2E-10 85.0 9.3 93 1247-1339 21-113 (148)
123 1a17_A Serine/threonine protei 98.0 8.9E-05 3E-09 79.1 15.5 125 1213-1340 15-142 (166)
124 4gco_A Protein STI-1; structur 98.0 3E-05 1E-09 80.3 11.2 99 1243-1341 8-107 (126)
125 3qou_A Protein YBBN; thioredox 98.0 7.2E-05 2.5E-09 89.1 16.2 162 1143-1309 115-283 (287)
126 3dra_A Protein farnesyltransfe 98.0 0.00042 1.4E-08 83.1 22.6 193 1147-1343 69-286 (306)
127 3rjv_A Putative SEL1 repeat pr 98.0 0.00024 8.2E-09 80.5 19.5 160 1175-1344 17-197 (212)
128 3urz_A Uncharacterized protein 97.9 4.4E-05 1.5E-09 86.2 12.9 155 1179-1339 7-181 (208)
129 2ifu_A Gamma-SNAP; membrane fu 97.9 8.4E-05 2.9E-09 89.4 16.1 221 1088-1336 4-253 (307)
130 3u3w_A Transcriptional activat 97.9 0.00034 1.1E-08 83.3 21.1 120 1217-1336 121-258 (293)
131 2ifu_A Gamma-SNAP; membrane fu 97.9 4.7E-05 1.6E-09 91.6 13.7 226 1022-1302 4-253 (307)
132 2qfc_A PLCR protein; TPR, HTH, 97.9 0.0002 6.7E-09 85.4 18.8 160 1177-1336 76-258 (293)
133 1p5q_A FKBP52, FK506-binding p 97.9 4.4E-05 1.5E-09 93.3 13.1 155 1160-1336 128-285 (336)
134 3u3w_A Transcriptional activat 97.9 0.00053 1.8E-08 81.6 22.0 203 1097-1308 33-264 (293)
135 1elw_A TPR1-domain of HOP; HOP 97.8 0.00025 8.4E-09 70.4 14.4 111 1212-1325 5-116 (118)
136 2dba_A Smooth muscle cell asso 97.8 0.00022 7.4E-09 74.4 14.6 115 1210-1327 27-145 (148)
137 2uy1_A Cleavage stimulation fa 97.8 0.026 9E-07 72.4 36.9 200 992-1203 197-411 (493)
138 3rjv_A Putative SEL1 repeat pr 97.8 0.00057 2E-08 77.3 18.9 173 1130-1313 6-200 (212)
139 2e2e_A Formate-dependent nitri 97.8 0.0001 3.5E-09 80.3 12.2 131 1187-1321 21-155 (177)
140 2xcb_A PCRH, regulatory protei 97.8 0.00011 3.7E-09 77.3 11.5 89 1250-1338 21-109 (142)
141 2vgx_A Chaperone SYCD; alterna 97.8 6.6E-05 2.3E-09 80.0 9.9 105 1212-1319 22-127 (148)
142 3sz7_A HSC70 cochaperone (SGT) 97.7 0.00018 6.2E-09 77.5 13.2 111 1211-1324 11-122 (164)
143 2qfc_A PLCR protein; TPR, HTH, 97.7 0.00047 1.6E-08 82.0 18.0 164 1147-1310 77-266 (293)
144 2e2e_A Formate-dependent nitri 97.7 9E-05 3.1E-09 80.8 10.8 119 1222-1343 21-143 (177)
145 2c2l_A CHIP, carboxy terminus 97.7 6.5E-05 2.2E-09 89.3 10.0 188 1145-1341 4-196 (281)
146 3gyz_A Chaperone protein IPGC; 97.7 0.0001 3.5E-09 79.0 10.5 100 1213-1315 38-138 (151)
147 3upv_A Heat shock protein STI1 97.7 0.00032 1.1E-08 71.6 13.6 110 1213-1325 6-122 (126)
148 3upv_A Heat shock protein STI1 97.7 0.0002 6.8E-09 73.2 12.0 95 1247-1341 4-98 (126)
149 2xcb_A PCRH, regulatory protei 97.7 0.00024 8.2E-09 74.7 12.3 109 1213-1324 20-129 (142)
150 1na0_A Designed protein CTPR3; 97.7 0.00074 2.5E-08 67.5 15.4 115 1176-1293 9-123 (125)
151 1hxi_A PEX5, peroxisome target 97.7 0.00011 3.9E-09 75.2 9.4 93 1249-1341 19-111 (121)
152 1a17_A Serine/threonine protei 97.6 0.0008 2.7E-08 71.5 15.8 129 1177-1309 14-145 (166)
153 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00035 1.2E-08 77.8 13.4 165 1150-1335 9-176 (198)
154 3q49_B STIP1 homology and U bo 97.6 0.00034 1.2E-08 72.2 12.4 101 1210-1313 8-109 (137)
155 2kck_A TPR repeat; tetratricop 97.6 0.00018 6.2E-09 70.7 9.7 95 1247-1341 6-103 (112)
156 3sz7_A HSC70 cochaperone (SGT) 97.6 0.00034 1.2E-08 75.3 12.0 97 1246-1342 10-106 (164)
157 1elw_A TPR1-domain of HOP; HOP 97.5 0.00039 1.3E-08 68.9 11.4 97 1247-1343 4-100 (118)
158 2vyi_A SGTA protein; chaperone 97.5 0.001 3.5E-08 67.1 14.6 119 1175-1297 11-130 (131)
159 3q49_B STIP1 homology and U bo 97.5 0.00052 1.8E-08 70.8 12.6 94 1246-1339 8-101 (137)
160 1dce_A Protein (RAB geranylger 97.5 0.0019 6.5E-08 84.4 20.6 172 1158-1333 42-244 (567)
161 3gw4_A Uncharacterized protein 97.5 0.00077 2.6E-08 74.4 14.6 155 1157-1311 4-177 (203)
162 4f3v_A ESX-1 secretion system 97.5 0.00029 9.8E-09 82.9 11.4 138 1180-1322 106-248 (282)
163 3gw4_A Uncharacterized protein 97.5 0.00077 2.6E-08 74.4 14.4 153 1186-1339 2-171 (203)
164 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00057 2E-08 87.1 14.5 140 1176-1337 268-407 (457)
165 2lni_A Stress-induced-phosphop 97.5 0.00049 1.7E-08 70.0 11.3 97 1246-1342 15-111 (133)
166 3q7a_A Farnesyltransferase alp 97.4 0.017 5.9E-07 70.0 25.6 17 1087-1103 66-82 (349)
167 2fbn_A 70 kDa peptidylprolyl i 97.4 0.00037 1.3E-08 77.6 10.3 120 1117-1238 11-149 (198)
168 1elr_A TPR2A-domain of HOP; HO 97.4 0.00066 2.2E-08 68.7 11.2 111 1214-1327 7-124 (131)
169 1p5q_A FKBP52, FK506-binding p 97.4 0.001 3.4E-08 81.2 14.7 94 1144-1238 146-257 (336)
170 2kck_A TPR repeat; tetratricop 97.4 0.00074 2.5E-08 66.2 10.7 100 1213-1315 8-111 (112)
171 4gcn_A Protein STI-1; structur 97.4 0.0005 1.7E-08 71.0 9.7 92 1248-1339 9-107 (127)
172 1hxi_A PEX5, peroxisome target 97.3 0.00061 2.1E-08 69.7 9.9 98 1215-1315 21-119 (121)
173 1ihg_A Cyclophilin 40; ppiase 97.3 0.00079 2.7E-08 83.3 12.7 138 1177-1336 224-362 (370)
174 1wao_1 Serine/threonine protei 97.3 0.00047 1.6E-08 88.4 10.7 117 1220-1339 15-134 (477)
175 3rkv_A Putative peptidylprolyl 97.3 0.00075 2.6E-08 72.4 10.8 81 1247-1327 63-144 (162)
176 3q7a_A Farnesyltransferase alp 97.3 0.0076 2.6E-07 73.1 20.5 230 1090-1342 52-329 (349)
177 2xev_A YBGF; tetratricopeptide 97.3 0.0018 6.2E-08 65.8 13.1 105 1217-1324 8-119 (129)
178 1wao_1 Serine/threonine protei 97.3 0.00051 1.7E-08 88.1 10.6 190 1186-1384 16-233 (477)
179 3k9i_A BH0479 protein; putativ 97.3 0.00031 1.1E-08 71.0 6.9 103 1223-1325 2-105 (117)
180 4f3v_A ESX-1 secretion system 97.3 0.0018 6.1E-08 76.1 13.8 183 1157-1344 18-237 (282)
181 2hr2_A Hypothetical protein; a 97.2 0.00051 1.8E-08 73.5 8.3 97 1219-1318 19-139 (159)
182 1elr_A TPR2A-domain of HOP; HO 97.2 0.00093 3.2E-08 67.5 10.0 97 1247-1343 4-107 (131)
183 3dss_A Geranylgeranyl transfer 97.2 0.02 7E-07 69.0 22.6 151 1161-1315 90-272 (331)
184 2dba_A Smooth muscle cell asso 97.2 0.0017 5.9E-08 67.4 11.7 96 1246-1342 27-126 (148)
185 4gcn_A Protein STI-1; structur 97.2 0.002 6.9E-08 66.3 11.7 98 1213-1313 10-115 (127)
186 2xev_A YBGF; tetratricopeptide 97.2 0.0017 5.8E-08 66.0 10.9 93 1251-1343 6-104 (129)
187 2l6j_A TPR repeat-containing p 97.1 0.00064 2.2E-08 67.1 7.4 90 1246-1335 3-98 (111)
188 3rkv_A Putative peptidylprolyl 97.1 0.0012 4E-08 70.8 9.7 93 1249-1341 13-123 (162)
189 3dss_A Geranylgeranyl transfer 97.1 0.056 1.9E-06 65.2 25.2 192 1126-1324 90-318 (331)
190 1na3_A Designed protein CTPR2; 97.1 0.0017 5.8E-08 61.4 9.7 83 1247-1329 9-91 (91)
191 2c2l_A CHIP, carboxy terminus 97.0 0.0023 7.9E-08 75.8 12.2 105 1210-1317 3-108 (281)
192 2if4_A ATFKBP42; FKBP-like, al 97.0 0.00091 3.1E-08 81.7 8.8 141 1178-1338 181-322 (338)
193 3ro3_A PINS homolog, G-protein 97.0 0.0024 8.1E-08 66.9 10.8 56 1283-1338 91-152 (164)
194 3ro3_A PINS homolog, G-protein 97.0 0.002 6.7E-08 67.5 10.2 100 1213-1312 51-160 (164)
195 3k9i_A BH0479 protein; putativ 97.0 0.00044 1.5E-08 69.9 4.6 82 1259-1340 2-86 (117)
196 3n71_A Histone lysine methyltr 96.9 0.0046 1.6E-07 79.0 13.9 125 1221-1345 319-465 (490)
197 4b4t_Q 26S proteasome regulato 96.9 0.0047 1.6E-07 77.2 13.6 186 1154-1339 13-240 (434)
198 2if4_A ATFKBP42; FKBP-like, al 96.9 0.00091 3.1E-08 81.6 6.7 109 1213-1340 181-289 (338)
199 2hr2_A Hypothetical protein; a 96.8 0.0041 1.4E-07 66.5 10.5 91 1249-1340 13-127 (159)
200 4b4t_Q 26S proteasome regulato 96.6 0.04 1.4E-06 68.7 19.1 209 1083-1310 12-245 (434)
201 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.015 5E-07 74.0 13.9 120 1144-1267 267-405 (457)
202 2kat_A Uncharacterized protein 96.4 0.0066 2.2E-07 60.7 8.3 81 1230-1313 4-85 (115)
203 1zu2_A Mitochondrial import re 96.4 0.0036 1.2E-07 66.9 6.2 92 1223-1317 14-127 (158)
204 1ihg_A Cyclophilin 40; ppiase 96.3 0.015 5E-07 71.9 12.1 136 1146-1301 224-361 (370)
205 3ma5_A Tetratricopeptide repea 96.2 0.014 4.9E-07 57.0 9.1 61 1279-1339 5-65 (100)
206 2kat_A Uncharacterized protein 96.1 0.015 5.2E-07 58.0 9.2 77 1194-1274 3-80 (115)
207 1zu2_A Mitochondrial import re 96.1 0.0044 1.5E-07 66.2 5.2 84 1257-1340 12-116 (158)
208 2l6j_A TPR repeat-containing p 95.8 0.0089 3E-07 58.7 5.9 95 1176-1274 4-105 (111)
209 1dce_A Protein (RAB geranylger 95.7 0.067 2.3E-06 69.8 14.9 134 1190-1328 43-191 (567)
210 2kc7_A BFR218_protein; tetratr 95.6 0.035 1.2E-06 53.4 9.0 66 1253-1318 6-72 (99)
211 3bee_A Putative YFRE protein; 95.6 0.044 1.5E-06 53.1 9.4 69 1278-1346 3-74 (93)
212 3n71_A Histone lysine methyltr 95.0 0.13 4.3E-06 65.8 13.7 97 1213-1309 353-463 (490)
213 3ma5_A Tetratricopeptide repea 95.0 0.027 9.3E-07 55.0 6.0 69 1246-1314 6-74 (100)
214 3ly7_A Transcriptional activat 95.0 0.24 8.2E-06 60.0 15.1 146 1174-1323 192-351 (372)
215 1klx_A Cysteine rich protein B 94.9 0.1 3.5E-06 54.3 10.6 113 1189-1312 8-128 (138)
216 3qww_A SET and MYND domain-con 94.7 0.14 4.8E-06 64.3 12.6 72 1248-1319 341-425 (433)
217 3qwp_A SET and MYND domain-con 94.5 0.21 7.3E-06 62.6 13.9 74 1248-1321 330-416 (429)
218 3mkq_A Coatomer beta'-subunit; 94.3 0.99 3.4E-05 61.0 21.0 100 1054-1170 662-761 (814)
219 1na3_A Designed protein CTPR2; 94.2 0.23 7.9E-06 46.3 10.2 76 1214-1292 12-88 (91)
220 3ly7_A Transcriptional activat 93.6 0.31 1.1E-05 59.0 12.2 128 1207-1339 190-334 (372)
221 3mkq_A Coatomer beta'-subunit; 93.4 1.2 4.1E-05 60.2 19.3 102 1155-1274 662-763 (814)
222 1klx_A Cysteine rich protein B 93.3 0.54 1.8E-05 48.8 12.1 79 1157-1238 37-124 (138)
223 2kc7_A BFR218_protein; tetratr 93.3 0.079 2.7E-06 50.9 5.1 85 1220-1315 9-95 (99)
224 3qwp_A SET and MYND domain-con 93.2 0.32 1.1E-05 61.0 11.8 83 1257-1339 297-395 (429)
225 2v5f_A Prolyl 4-hydroxylase su 92.8 0.28 9.6E-06 48.2 8.5 76 1246-1321 4-86 (104)
226 3qww_A SET and MYND domain-con 92.7 0.24 8.1E-06 62.2 9.6 59 1281-1339 340-406 (433)
227 3bee_A Putative YFRE protein; 91.1 0.77 2.6E-05 44.3 9.1 72 1245-1316 4-78 (93)
228 1pc2_A Mitochondria fission pr 90.0 1 3.5E-05 47.5 9.5 91 1228-1320 15-110 (152)
229 1wy6_A Hypothetical protein ST 88.8 12 0.0004 38.4 15.3 65 1283-1347 93-157 (172)
230 3u64_A Protein TP_0956; tetrat 87.8 1.4 4.7E-05 51.4 9.4 83 1227-1313 179-272 (301)
231 3mkq_B Coatomer subunit alpha; 85.8 17 0.00059 39.2 16.0 105 1052-1173 13-117 (177)
232 3mkq_B Coatomer subunit alpha; 84.0 15 0.00052 39.6 14.5 129 951-1101 13-141 (177)
233 1qsa_A Protein (soluble lytic 83.2 1.2E+02 0.0042 39.3 27.0 251 1048-1309 76-347 (618)
234 1nzn_A CGI-135 protein, fissio 82.6 8.3 0.00029 39.2 11.1 93 1227-1321 17-114 (126)
235 4gns_B Protein CSD3, chitin bi 78.2 4 0.00014 54.3 9.1 53 1288-1340 344-396 (754)
236 2v5f_A Prolyl 4-hydroxylase su 77.3 9.1 0.00031 37.1 9.4 62 1214-1275 8-74 (104)
237 1pc2_A Mitochondria fission pr 75.4 5.2 0.00018 42.1 7.3 80 1263-1342 14-98 (152)
238 3lvg_A Clathrin heavy chain 1; 74.7 3.3 0.00011 51.3 6.2 396 674-1129 57-531 (624)
239 3u64_A Protein TP_0956; tetrat 73.7 5.6 0.00019 46.4 7.6 113 1158-1275 134-268 (301)
240 1wy6_A Hypothetical protein ST 68.4 89 0.0031 32.1 13.7 66 1246-1311 90-155 (172)
241 2ff4_A Probable regulatory pro 65.0 31 0.0011 42.2 12.4 69 1283-1351 173-246 (388)
242 3lvg_A Clathrin heavy chain 1; 64.7 0.029 1E-06 68.8 -14.2 193 1075-1328 54-276 (624)
243 1zbp_A Hypothetical protein VP 62.9 44 0.0015 38.4 11.9 52 1186-1238 7-58 (273)
244 3o48_A Mitochondria fission 1 60.9 28 0.00097 35.6 8.8 77 1243-1319 36-116 (134)
245 4b4t_P 26S proteasome regulato 60.0 3.2E+02 0.011 33.8 22.5 97 1178-1274 139-245 (445)
246 4h7y_A Dual specificity protei 59.8 33 0.0011 35.9 9.1 106 1209-1316 11-129 (161)
247 2uwj_G Type III export protein 58.4 73 0.0025 30.8 10.3 86 721-811 21-106 (115)
248 3txn_A 26S proteasome regulato 57.9 2.3E+02 0.0079 34.5 18.0 161 1148-1309 22-209 (394)
249 2p58_C Putative type III secre 57.6 76 0.0026 30.7 10.3 86 721-811 22-107 (116)
250 1y8m_A FIS1; mitochondria, unk 54.7 61 0.0021 33.6 10.1 75 1244-1318 36-114 (144)
251 4gns_B Protein CSD3, chitin bi 54.0 76 0.0026 42.2 13.7 53 1220-1275 346-399 (754)
252 2ff4_A Probable regulatory pro 53.0 55 0.0019 39.9 11.6 71 1179-1250 174-248 (388)
253 3lpz_A GET4 (YOR164C homolog); 52.9 3.5E+02 0.012 32.1 21.6 133 743-886 37-181 (336)
254 4h7y_A Dual specificity protei 49.8 45 0.0015 35.0 8.2 114 1173-1289 10-136 (161)
255 2wpv_A GET4, UPF0363 protein Y 49.8 3.8E+02 0.013 31.5 21.3 168 1047-1240 36-217 (312)
256 4fhn_B Nucleoporin NUP120; pro 48.4 1.3E+02 0.0044 42.4 15.6 124 1214-1338 902-1043(1139)
257 3ffl_A Anaphase-promoting comp 46.9 64 0.0022 34.3 9.1 29 1247-1275 122-150 (167)
258 4b4t_P 26S proteasome regulato 46.7 5E+02 0.017 32.0 27.8 147 786-934 30-203 (445)
259 1o7q_A N-acetyllactosaminide a 45.6 2.1E+02 0.0073 32.9 13.6 136 478-620 115-261 (289)
260 1v54_E Cytochrome C oxidase po 44.8 1.5E+02 0.005 28.9 10.1 74 1262-1347 25-99 (109)
261 1v54_E Cytochrome C oxidase po 42.7 99 0.0034 30.1 8.7 62 1192-1255 26-87 (109)
262 2qx5_A Nucleoporin NIC96; mRNA 40.5 2.5E+02 0.0087 36.6 15.3 84 1081-1175 300-386 (661)
263 2p6w_A VP54, putative glycosyl 40.0 88 0.003 33.7 8.7 18 492-509 69-86 (213)
264 4fhn_B Nucleoporin NUP120; pro 36.9 1.2E+02 0.0042 42.6 12.5 140 1181-1338 817-961 (1139)
265 3ltj_A Alpharep-4; protein eng 36.1 4.1E+02 0.014 28.0 21.0 81 739-823 26-106 (201)
266 3eiq_C Programmed cell death p 35.4 6.5E+02 0.022 30.1 18.0 113 1148-1275 220-338 (358)
267 1yzm_A FYVE-finger-containing 35.1 56 0.0019 27.6 4.9 38 222-259 6-43 (51)
268 1qsa_A Protein (soluble lytic 33.6 8.9E+02 0.03 31.2 40.5 433 682-1145 17-485 (618)
269 1z0j_B FYVE-finger-containing 33.2 61 0.0021 28.1 5.0 39 221-259 12-50 (59)
270 1nzn_A CGI-135 protein, fissio 32.9 72 0.0025 32.3 6.6 83 1260-1342 14-101 (126)
271 3v1a_A Computational design, M 32.8 63 0.0022 26.9 4.8 36 223-258 6-41 (48)
272 3lpz_A GET4 (YOR164C homolog); 32.8 6.8E+02 0.023 29.6 24.1 87 903-989 89-182 (336)
273 2y69_E Cytochrome C oxidase su 31.2 2.7E+02 0.0094 28.5 10.1 71 1265-1347 71-142 (152)
274 2uwj_G Type III export protein 30.8 3.8E+02 0.013 26.0 10.7 88 820-912 19-106 (115)
275 2y69_E Cytochrome C oxidase su 30.5 1.8E+02 0.0061 29.8 8.7 60 1194-1255 71-130 (152)
276 2p58_C Putative type III secre 30.3 3.9E+02 0.013 25.9 11.3 88 820-912 20-107 (116)
277 1z0k_B FYVE-finger-containing 30.0 67 0.0023 28.8 4.9 39 221-259 23-61 (69)
278 3ltm_A Alpha-REP4; protein eng 29.9 5.3E+02 0.018 27.4 20.7 188 754-958 15-203 (211)
279 3ffl_A Anaphase-promoting comp 29.8 2.6E+02 0.0089 29.7 10.4 38 1287-1325 128-165 (167)
280 3txn_A 26S proteasome regulato 27.8 8.8E+02 0.03 29.3 23.1 39 1243-1282 252-290 (394)
281 1wdy_A 2-5A-dependent ribonucl 26.3 2.2E+02 0.0077 31.7 10.5 40 1130-1169 199-240 (285)
282 2wpv_A GET4, UPF0363 protein Y 25.6 8.5E+02 0.029 28.4 22.9 160 850-1036 41-215 (312)
283 4ady_A RPN2, 26S proteasome re 25.3 1.4E+03 0.049 30.9 37.9 512 776-1343 149-695 (963)
284 2qx5_A Nucleoporin NIC96; mRNA 22.1 6.1E+02 0.021 33.0 14.1 78 982-1070 302-382 (661)
285 3o48_A Mitochondria fission 1 21.5 4.4E+02 0.015 26.9 9.8 71 1206-1280 35-110 (134)
286 1wdy_A 2-5A-dependent ribonucl 21.0 5.4E+02 0.018 28.3 12.4 47 1022-1068 192-240 (285)
287 4ayl_A BOGT-metal-independent 20.8 8.9E+02 0.03 27.2 13.0 120 495-619 87-214 (246)
288 1k1a_A B-cell lymphoma 3-encod 20.8 3.7E+02 0.013 29.1 10.6 20 1050-1069 153-172 (241)
289 4b4t_R RPN7, 26S proteasome re 20.7 2.3E+02 0.008 34.8 9.6 96 1147-1242 133-239 (429)
No 1
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}
Probab=100.00 E-value=2.5e-64 Score=572.13 Aligned_cols=234 Identities=31% Similarity=0.629 Sum_probs=197.8
Q ss_pred ccccccccccccccCCCCC-------CCccccCCCCCCCCCChhHHHHHHhhCcCCC---CC-CCCCHHHHHHHHHHHHh
Q 040435 1403 ERHSKEYCAMYDICGERSD-------GKVLNCPYGSPSVKPDELFSAKIESLCPSIS---GN-VCCTETQFETLRAQVQQ 1471 (1991)
Q Consensus 1403 ~~~~~~~c~~~~~Cg~~~~-------~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~q~~~l~~~~~~ 1471 (1991)
.+|++++|+|||+||++++ ++.|||+|+++|++++++++++|+++||++. +. +|||.+|+++|++||++
T Consensus 7 ~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl~~ 86 (265)
T 3qnt_A 7 TIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASLSI 86 (265)
T ss_dssp CCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHHHH
T ss_pred CccCCCcceEecccCCCccccccccCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999875 8999999999999999999999999999974 23 89999999999999999
Q ss_pred hcccccCChhHHhhHhhhccccccCcCCCcceEEEeecccC--CcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHH
Q 040435 1472 AIPFLVGCPACLRNFLNLFCELSCSPNQSQFINVTSVSEVN--GNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAI 1549 (1991)
Q Consensus 1472 ~~~~~~~CpaC~~N~~~~~C~~tCsP~Qs~F~~v~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am 1549 (1991)
|+++|+|||||++||++|||+|||||+||+||+||++.+.+ ++++|++|+|||+++||+++|||||||+||+||++||
T Consensus 87 a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~Am 166 (265)
T 3qnt_A 87 TKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAV 166 (265)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCBTT
T ss_pred HHHHhCcChHHHHHHHHHhcCCCCCCCcccceeeEeecccCCCCcceEEEEEEEECHHHhhhHhhhhcCcccccccchhh
Confidence 99999999999999999999999999999999999987643 6778999999999999999999999999999999999
Q ss_pred hhcCC--CcC--CHHHHHHhhcCCCCCCCCCCCeEEEeecCCCC---CCccccCCCCccCCCCC----CCCcccCCCCCC
Q 040435 1550 DFIGA--GAK--SFKEWFAFIGQKAPPGFPGSPYAINFKLSIPE---SSGLELMNVSTYSCGDT----SLGCSCGDCPLS 1618 (1991)
Q Consensus 1550 ~~~g~--~a~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~~---~~~~~~~~~~~~~C~~~----~~~CsC~dC~~s 1618 (1991)
|+||| ||+ ||++||+|||++++ ++|||||||+++... ..+|+|||..+++|||+ +++|||+||++|
T Consensus 167 ~l~cG~~gA~~Cn~~~wl~flG~~~n---~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~s 243 (265)
T 3qnt_A 167 GTMCGVYGSALCNAQRWLNFQGDTGN---GLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS 243 (265)
T ss_dssp GGGSTTSCSSSCCHHHHHHHHTCTTT---TCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCGGG
T ss_pred hhhcCCcCcCCCCHHHHHHHhccccC---CCCCeEEEeeccCCCccCCCCceECCCCCcCCCCCCCCCCCCEecccchhh
Confidence 99987 665 99999999999873 689999999986421 25899999999999986 579999999986
Q ss_pred CCCCCCCCCCCCCCCCceeEecCccc
Q 040435 1619 PMCSSSEPPSPPRKEACTIRIGSLKV 1644 (1991)
Q Consensus 1619 ~~C~~~~~~~~~~~~~~~~~i~~~~~ 1644 (1991)
||++|+| || .+.+|+|||+++
T Consensus 244 --Cp~~p~~-p~--~~~p~~I~gldg 264 (265)
T 3qnt_A 244 --CPAIARP-QA--LDSTFYLGQMPG 264 (265)
T ss_dssp --CCC---------------------
T ss_pred --cCCCCCC-CC--CCCCcEEEeeeC
Confidence 9887554 33 344678888864
No 2
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*
Probab=100.00 E-value=1.5e-62 Score=548.27 Aligned_cols=213 Identities=34% Similarity=0.713 Sum_probs=193.8
Q ss_pred ccccccccccCCCCCCCccccCCCCCCCCCChhHHHHHHhhCcCCC---CCCCCCHHHHHHHHHHHHhhcccccCChhHH
Q 040435 1407 KEYCAMYDICGERSDGKVLNCPYGSPSVKPDELFSAKIESLCPSIS---GNVCCTETQFETLRAQVQQAIPFLVGCPACL 1483 (1991)
Q Consensus 1407 ~~~c~~~~~Cg~~~~~~~l~c~~~~~~~~~~~~~~~~l~~~Cp~~~---~~~CC~~~q~~~l~~~~~~~~~~~~~CpaC~ 1483 (1991)
+++|+|||+||++++++.|||+|+++|++++++++++|+++||++. +.+|||.+|+++|++||++++++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCcceecCccCCCCCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCHHHHHHHHHHHHHHHHhcCcChHHH
Confidence 4689999999998889999999999999999999999999999975 2499999999999999999999999999999
Q ss_pred hhHhhhccccccCcCCCcceEEEeecc----c--CCcceEEEEEEEEchhhhHHHhhcCcCCCCCCCChhHHhhc-CCCc
Q 040435 1484 RNFLNLFCELSCSPNQSQFINVTSVSE----V--NGNLTVDGIDYYVTSTFGEELYNSCKDVKFGTMNTRAIDFI-GAGA 1556 (1991)
Q Consensus 1484 ~N~~~~~C~~tCsP~Qs~F~~v~~~~~----~--~~~~~v~~~~~~~~~~~~~~~~~SCk~v~f~~tn~~am~~~-g~~a 1556 (1991)
+||++|||+|||||+||+||+||++.+ . +++++|++|+|||+++||+++|||||||+||+||++||||| |+||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHhcCCCCCCccccceeeEeccccccccccCCcceEEEEEEEECHHHHHHHhhhhhCcccccccchhHHhhcCCCC
Confidence 999999999999999999999999865 2 35678999999999999999999999999999999999998 7777
Q ss_pred C--CHHHHHHhhcCCCCCCCCCCCeEEEeecCCCCCCccccCCCCccCCCC----CCCCcccCCCCCCCCCCCC
Q 040435 1557 K--SFKEWFAFIGQKAPPGFPGSPYAINFKLSIPESSGLELMNVSTYSCGD----TSLGCSCGDCPLSPMCSSS 1624 (1991)
Q Consensus 1557 ~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~s~~C~~~ 1624 (1991)
+ ||++||+|||+++ +|+|||||||+++.....||+|||..+++||+ .+++|||+||++| ||++
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~s--Cp~~ 230 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSIV--CGPK 230 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGGG--C---
T ss_pred CCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCCccceECCCCCcCCCCCCCCCCCCEECccchhh--cCCC
Confidence 6 9999999999986 35899999999877656799999999999985 4689999999986 9653
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.5e-35 Score=392.78 Aligned_cols=498 Identities=10% Similarity=-0.040 Sum_probs=361.1
Q ss_pred HHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 750 FYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQV 829 (1991)
Q Consensus 750 ~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l 829 (1991)
.+.++|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356788899999999999999999999999999999999999999999985 458889999999999999999999999
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhc-CCC------------------CHHHHHHHHHHHHHcCChH
Q 040435 830 HGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEM-CER------------------DVISWSVMIGGYVQSAEAF 889 (1991)
Q Consensus 830 ~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m-~~~------------------d~~syn~LI~a~~~~G~~~ 889 (1991)
+..+... .++..+++.++.+|.+ |++++|.++|+++ +.. +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9987643 5788899999999999 9999999999955 433 4899999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChH--HHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 040435 890 SGLRLFRQMVSGFKNEPDGQ-SLVSVLKACTNLRDLT--MGRMV-HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKV 965 (1991)
Q Consensus 890 eAl~lf~~M~~~~gv~Pd~~-T~~~lL~a~~~~g~~~--~a~~l-~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~l 965 (1991)
+|+++|++|.+. .|+.. .+..+...+...+..+ .+..+ +..+...+......+++.++.+|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 999999999874 45433 3333333222221111 11111 44445555555667788889999999999999999
Q ss_pred hccCCC--CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc
Q 040435 966 FSEMPQ--KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN 1043 (1991)
Q Consensus 966 f~~m~~--~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d 1043 (1991)
|+++.+ ++..+|+.++.+|.+.|++++|+.+|++|...+ | .+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----------------------------------~~ 338 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--P----------------------------------YN 338 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TC
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--c----------------------------------cc
Confidence 999987 799999999999999999999999999986532 1 13
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1044 ELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEAC 1120 (1991)
Q Consensus 1044 ~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~ 1120 (1991)
..+++.++.+|.+.|++++|..+|+++.+ .+..+|+.++..|.+.|++++|+++|++|.+. .|
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------ 404 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DP------------ 404 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CC------------
Confidence 33444555555555555555555555432 34455555666666666666666666655442 11
Q ss_pred hhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALA 1197 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~ 1197 (1991)
.+..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|++
T Consensus 405 ----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 405 ----------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 1223344455555555555555555555432 355677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1198 LVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEPA--LEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1198 lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P~--~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|++|.+.. +.+..+|..+...|.+.|++++|.++|++|.+.. +..|+ ..+|..++.+|.+.|++++|.+++++
T Consensus 463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 777777643 3356777777777788888888888887776532 56787 78999999999999999999999999
Q ss_pred CccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1273 MPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1273 m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+.+..+.+..+|..|..+|...|+.++|...++++++++|+++..+..|+++|..
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8765566899999999999999999999999999999999999999999999864
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-34 Score=380.97 Aligned_cols=480 Identities=9% Similarity=-0.052 Sum_probs=400.5
Q ss_pred Hhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 040435 852 YVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMV 930 (1991)
Q Consensus 852 yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l 930 (1991)
+.+ |....+..+|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|+++.|..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344 6778888999999999999999999999999999999999999985 568999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCC-CC------------------CHhHHHHHHHHHHhcCCHH
Q 040435 931 HGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMP-QK------------------NKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 931 ~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~-~~------------------dv~s~n~LI~a~~~~g~~~ 991 (1991)
+..+.. ..++..+++.++.+|.++|++++|.++|+++. .. +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 998754 36789999999999999999999999999543 33 4889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHH-HHHHHHHHhccCChhh--HHHH-HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHH
Q 040435 992 EALSLLYSMGKGVNEVDEIT-LVNILQICKCFVHPME--CKSV-HCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLF 1067 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T-~~~lL~a~~~~g~~~~--a~~i-~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf 1067 (1991)
+|+++|++|.+. .|+..+ +..+...+...+..+. +..+ +..+...+......+|+.++.+|.++|++++|.++|
T Consensus 218 ~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 218 RAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999874 354443 3333332222211111 1111 344445555666778899999999999999999999
Q ss_pred HhcCC--CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccch
Q 040435 1068 NDVKK--PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEV 1145 (1991)
Q Consensus 1068 ~~m~~--~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~ 1145 (1991)
+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..++..++.++...|+.++|..++..+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 899999999999999999999999999999765 2366788999999999999999999999998654 5578
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
.+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8999999999999999999999998864 468899999999999999999999999999864 457889999999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCCC--HHHHHHHHHHHHHcC
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKAT--ASAWGALLSACRSYG 1295 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~pd--~~~~~~Ll~a~~~~g 1295 (1991)
+.|++++|.++|++|.+. ...+..+|..++.+|.+.|++++|.+++++|.+. ..|+ ..+|..++.+|..+|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999874 2336889999999999999999999999998652 3566 789999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1296 NTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
++++|...++++++++|+++..|..++++|...|+|++|....+.+.+
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998776654
No 5
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=3.9e-37 Score=365.65 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=181.7
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
.+||++++|+ +.+++|+|+|+++|+++ .+++|||++++++.+..+ .|
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~------------------------------~L 53 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLK------------------------------DL 53 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHH------------------------------HH
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHH------------------------------HH
Confidence 3899999996 66999999999999985 579999999987755443 44
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccC-CCeEEEeeCCEeEecCCchhhccCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPK-LEKILFLDDDIVVQKDLTPLWSVDLHG 522 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~-~dkvLyLD~Divv~~dl~~L~~~dl~~ 522 (1991)
+++.......+.+...+...+. .....+++|.++|+||++|+++|+ ++||||||+|+||++||++||++|++|
T Consensus 54 ~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~ 127 (276)
T 3tzt_A 54 GEDLKKFSYTLYPIRATDDLFS------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISD 127 (276)
T ss_dssp HHHHHTTTCEEEEEECC-------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTT
T ss_pred HHHHHHcCCEEEEEEeCHHHHh------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCC
Confidence 4443221112222111111110 111235788999999999999995 999999999999999999999999999
Q ss_pred CeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCch
Q 040435 523 MVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPG 602 (1991)
Q Consensus 523 ~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~ 602 (1991)
+.+|||+||.... +.+.....+++..++||||||||+|+++||+.+++++++.|++.+... ..++|||++
T Consensus 128 ~~~aav~d~~~~~--------~~~~~~~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~--~~~~DQd~L 197 (276)
T 3tzt_A 128 YILAAASHTGKTD--------MANNVNRIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN--LLLPDQDIL 197 (276)
T ss_dssp SSEEEEEC----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHH
T ss_pred CeEEEEEecccch--------HHHHHHHhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc--ccCCChhHH
Confidence 9999999976531 111111223444469999999999999999999999999998876543 567999999
Q ss_pred hhhhccccccccc-cccccccCCCccc--------c-ccccCCceEeecccCCCccccccccccccccchhhhhhhhhc
Q 040435 603 LITFYNLTYPLDR-SWHVLGLGYDPAL--------N-LTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKYVILWSLRL 671 (1991)
Q Consensus 603 n~~f~~~~~~L~~-~wN~~~~~~~~~~--------~-~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~yv~~d~p~l 671 (1991)
|++|.++++.||+ +||+++ ++.... . ....++++||||+|..|||+..+..+++++||+|.++..+++
T Consensus 198 N~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~ 275 (276)
T 3tzt_A 198 NAMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL 275 (276)
T ss_dssp HHHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence 9999999999999 999985 332110 0 113468999999999999999999999999999999887765
No 6
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=99.98 E-value=4.8e-33 Score=337.57 Aligned_cols=248 Identities=19% Similarity=0.246 Sum_probs=182.8
Q ss_pred ceEEEEccc--chhhHHHHHHH-hhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 367 YHYAIFSDN--VLATSVVVNST-VAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 367 ~hi~~~~Dn--~~~~~v~i~Si-l~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
+||++++|+ +.++.|++.|+ ++|++ .+++|||++++++.+..+ .|
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~------------------------------~L 48 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRA------------------------------AV 48 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHH------------------------------HH
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHH------------------------------HH
Confidence 699999996 66999999999 99874 469999999987755444 33
Q ss_pred HHHhhc-cceEEEecCCCCCCCcCCcCCcccC-CCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCC
Q 040435 444 RQLESA-RLKEYYFKANHPSSLSAGSDNLKYR-NPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLH 521 (1991)
Q Consensus 444 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~ 521 (1991)
+++... ......++... ..+. ++. +.+++|..+|+||++|++||++|||||||+|+||++||++||++|++
T Consensus 49 ~~~~~~~~~~i~~~~~~~-~~~~------~~~~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~l~ 121 (311)
T 1g9r_A 49 AANLRGGGGNIRFIDVNP-EDFA------GFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLG 121 (311)
T ss_dssp HHHSGGGTTTEEEEECCG-GGGT------TSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCT
T ss_pred HHHHHHcCCEEEEEEcCH-HHHh------cCccccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccCCC
Confidence 333221 11111111110 0000 111 13578889999999999999999999999999999999999999999
Q ss_pred CCeeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCc
Q 040435 522 GMVNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPP 601 (1991)
Q Consensus 522 ~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~ 601 (1991)
|+.+|||+|+...... ......++++..+||||||||+|+++||+.++++++.+|++..... +.++|||+
T Consensus 122 ~~~~aav~d~~~~~~~--------~~~~~~~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~~--~~~~DQd~ 191 (311)
T 1g9r_A 122 DNWLGASIDLFVERQE--------GYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDV--MQYQDQDI 191 (311)
T ss_dssp TCSEEEEECHHHHTST--------THHHHTTCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTT--CSSHHHHH
T ss_pred CcEEEEEeccchhhhH--------HHHHhcCCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccCc--CccCCcCH
Confidence 9999999987543110 0001123445578999999999999999999999999998876533 67899999
Q ss_pred hhhhhccccccccccccccccCCCc-------c---c----cccccCCceEeecccCCCccccccccccccccchh
Q 040435 602 GLITFYNLTYPLDRSWHVLGLGYDP-------A---L----NLTQIDNGAVVHYNGNNKPWLDLAVSKYKPYWSKY 663 (1991)
Q Consensus 602 ~n~~f~~~~~~L~~~wN~~~~~~~~-------~---~----~~~~~~n~~IiHY~g~~KPW~~~a~~~~~~~W~~y 663 (1991)
+|.+|.++++.||++||++...+.. . . .....++++||||+|..|||...+.++..++|+++
T Consensus 192 lN~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~~~~~ 267 (311)
T 1g9r_A 192 LNGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTEL 267 (311)
T ss_dssp HHHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTHHHHHH
T ss_pred HHHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHHHHHHH
Confidence 9999999999999999998522110 0 0 01223578999999999999888777766666544
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.89 E-value=8.5e-23 Score=263.63 Aligned_cols=195 Identities=15% Similarity=0.100 Sum_probs=113.1
Q ss_pred HHHHHHhcCC-----CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC---------hHH
Q 040435 1063 AWKLFNDVKK-----PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE---------LSS 1128 (1991)
Q Consensus 1063 A~~lf~~m~~-----~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~---------le~ 1128 (1991)
+..+++++.+ .....++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 4444455543 23346888999999999999999999999999999999999999999987654 445
Q ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1129 SKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1129 a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
|.++++.|.+.|+.||..+||+||.+|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555554432 4444555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 040435 1205 GGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLA 1258 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~ 1258 (1991)
.|+.||..||++||.+|++.|++++|.+++++|. +.|+.|+..+|+.+++.+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555543 2344444444444444443
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.88 E-value=2e-22 Score=260.11 Aligned_cols=210 Identities=10% Similarity=-0.033 Sum_probs=158.4
Q ss_pred HHHHHHHHhcCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcC
Q 040435 993 ALSLLYSMGKGVNEVDE-ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVK 1071 (1991)
Q Consensus 993 Al~lf~~M~~~Gi~Pd~-~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~ 1071 (1991)
+..+.++|.+.++.+.. ..++.+|.+|++.|++++|.++|..|.+.|+.||..+||+||.+|++.+...+
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~--------- 79 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE--------- 79 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS---------
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh---------
Confidence 33444455544444332 23555555666666666666666666666666666666666666655544221
Q ss_pred CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1072 KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1072 ~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
..+.+..++|+++|++|.+.|+.||..||+++|.+|++.|+++.|.++++.|.+.|+.||..+||+|
T Consensus 80 -------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~l 146 (501)
T 4g26_A 80 -------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPA 146 (501)
T ss_dssp -------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred -------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHH
Confidence 1234556889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHhccC----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
|.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|.+.|+.|+..||+.|+..++..
T Consensus 147 I~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 147 LFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999974 899999999999999999999999999999999999999999999988764
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=1.1e-19 Score=227.32 Aligned_cols=373 Identities=12% Similarity=0.022 Sum_probs=279.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHH
Q 040435 915 LKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 915 L~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~ 991 (1991)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.|++++|...++...+ .+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345667788888888888877654 23455666777778888888888887766542 36677888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCH-HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhc
Q 040435 992 EALSLLYSMGKGVNEVDE-ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDV 1070 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~-~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m 1070 (1991)
+|+..|+++.. +.|+. .++..+..++...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|+++
T Consensus 85 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 85 EAIEHYRHALR--LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888765 23433 345566666666666666666666665543 122334445555555566666666666555
Q ss_pred CC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhH
Q 040435 1071 KK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAV 1147 (1991)
Q Consensus 1071 ~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v 1147 (1991)
.+ | +..+|+.+...|.+.|++++|+..|+++.+ .. +.+...
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----------------------------------~~-p~~~~~ 205 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT-----------------------------------LD-PNFLDA 205 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-----------------------------------HC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------------cC-CCcHHH
Confidence 42 2 344555555555556666666655555544 22 123445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
+..+...|.+.|++++|...|++..+ | +..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..++...
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc
Confidence 66677788888899999988887653 3 57889999999999999999999999999853 23567889999999999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGAT 1304 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~ 1304 (1991)
|++++|.+.++.+++. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+..++...|+.++|...+
T Consensus 285 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999874 33468899999999999999999999999998766667899999999999999999999999
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++++++|+++..|..++.+|...|+
T Consensus 363 ~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 363 KEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999988764
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.85 E-value=1.2e-18 Score=217.97 Aligned_cols=351 Identities=14% Similarity=0.094 Sum_probs=289.3
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Q 040435 982 SGLVVNEKYSEALSLLYSMGKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLV 1060 (1991)
Q Consensus 982 ~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l 1060 (1991)
..+.+.|++++|+..+.++.+. .|+.. .+..+...+...++++++...+..+++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 4455667777777777666542 34433 33344445556677777777776666543 45677888888999999999
Q ss_pred HHHHHHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhccChHHHHHHHHHH
Q 040435 1061 ELAWKLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-TIINLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1061 ~~A~~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
++|...|+++.+ | +..+|..+...|.+.|++++|++.|.++.+. .|+.. .+..+-..+...|++++|...+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999988763 4 4457888999999999999999999998874 46544 4455666677889999999999888
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAV 1212 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~ 1212 (1991)
.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++.... .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 8764 34567888999999999999999999998864 35678999999999999999999999999874 45 577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
++..+..++...|++++|.+.|+.+++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 889999999999999999999999986 566 4788999999999999999999999999876677899999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...|+.++|...+++++++.|+++..+..++.+|...|++++|....+.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999988776653
No 11
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.83 E-value=7e-21 Score=231.28 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=141.3
Q ss_pred cceEEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHH
Q 040435 366 LYHYAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVL 443 (1991)
Q Consensus 366 ~~hi~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l 443 (1991)
..+|++.+|+ +.++.|++.|+++|++. .++++ +++++++....+ .|
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~------------------------------~L 51 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRK------------------------------AL 51 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHH------------------------------HH
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHH------------------------------HH
Confidence 4678888875 66899999999999765 35666 667676544333 33
Q ss_pred HHHhhccceEEEecCCCCCCCcCCcCCcccCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCC
Q 040435 444 RQLESARLKEYYFKANHPSSLSAGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGM 523 (1991)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~ 523 (1991)
+++ ......++..... . ..+.... +......+|.||+++++ ++++||||||+|+||++||++||+++
T Consensus 52 ~~~---~~~v~~v~~l~~~--~--~~~~~~~-~~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~---- 118 (333)
T 1ll2_A 52 EIV---FDEVITVDILDSG--D--SAHLTLM-KRPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE---- 118 (333)
T ss_dssp HHH---CSEEEECCTTSTT--S--TTHHHHH-HCGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC----
T ss_pred HHh---CCEEEEEeecCCc--c--hhhcccc-cccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC----
Confidence 333 1122222211100 0 0000000 01123589999999995 77999999999999999999999997
Q ss_pred eeEeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchh
Q 040435 524 VNGAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGL 603 (1991)
Q Consensus 524 ~~aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n 603 (1991)
.+|||+|. +| .+||||||||+|++.-. .+++.++.... ..+.++||+++|
T Consensus 119 ~~aAv~d~--------------------~~---~~~fNsGvmlin~~~~~----~~~l~~~~~~~---~~~~~~DQ~~LN 168 (333)
T 1ll2_A 119 ELSAAPDP--------------------GW---PDCFNSGVFVYQPSVET----YNQLLHVASEQ---GSFDGGDQGLLN 168 (333)
T ss_dssp SSEEEECS--------------------SS---TTSEEEEEEEECCCHHH----HHHHHHHHHHT---CCTTSSHHHHHH
T ss_pred ceeEEecC--------------------CC---CcceeeeEEEEeCCHHH----HHHHHHHHHhc---CCCCCCCHHHHH
Confidence 47788762 12 25999999999875322 23344444432 246789999999
Q ss_pred hhhcccc-----ccccccccccccC-CCcccc-ccccCCceEeecccCCCccccccccc
Q 040435 604 ITFYNLT-----YPLDRSWHVLGLG-YDPALN-LTQIDNGAVVHYNGNNKPWLDLAVSK 655 (1991)
Q Consensus 604 ~~f~~~~-----~~L~~~wN~~~~~-~~~~~~-~~~~~n~~IiHY~g~~KPW~~~a~~~ 655 (1991)
.+|.+.+ +.||..||++... |..... .....+++||||+|..|||......+
T Consensus 169 ~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~ 227 (333)
T 1ll2_A 169 TFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTK 227 (333)
T ss_dssp HHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETT
T ss_pred HHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCC
Confidence 9998654 7999999998421 111001 12356889999999999997664443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=2.6e-18 Score=218.58 Aligned_cols=347 Identities=10% Similarity=-0.002 Sum_probs=236.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHH
Q 040435 974 KVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDG 1053 (1991)
Q Consensus 974 v~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~ 1053 (1991)
...|..+...|.+.|++++|+.+|+++... ...+..++..+..++...|++++|...+..+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 344555555555555555555555554432 11123333333444444444444444444444333 2234556666677
Q ss_pred HHhcCCHHHHHHHHHhcCC--C-ch---hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChH
Q 040435 1054 YSKCHLVELAWKLFNDVKK--P-DV---VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELS 1127 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~--~-d~---~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le 1127 (1991)
|.+.|++++|.+.|+++.+ | +. ..|..++..+...+ +..+...+...|+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCHH
Confidence 7777777777777776654 2 22 44554443311111 111122234455555
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1128 SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1128 ~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.|...+..+.+.. +.+..++..+..+|.++|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++..
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555432 23556777888889999999999999988764 4678999999999999999999999999986
Q ss_pred CCCCCCHHH-HHHH------------HHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHH
Q 040435 1205 GGLQPNAVT-TLSV------------LSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1205 ~Gi~Pd~~T-~~~L------------L~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA 1266 (1991)
. .|+... +..+ ..+|.+.|++++|.++|+.+++ +.|+ ..+|..++.++.+.|++++|
T Consensus 240 ~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 240 L--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp H--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred h--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3 454443 3333 7889999999999999999987 4555 45899999999999999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH------------HHHHhCC--Cch
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS------------SMYAAGG--LWV 1332 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~------------~lya~~G--~~~ 1332 (1991)
.+.++++.+..+.+..+|..+..+|...|++++|...++++++++|+++..+..++ +.|...| ++.
T Consensus 315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 99999987644567899999999999999999999999999999999999999999 5677777 555
Q ss_pred hHHHHHHHHHHcCCcccCc
Q 040435 1333 ESSGTRLLAKERGVKVVAG 1351 (1991)
Q Consensus 1333 ea~~vr~~m~~~gi~k~~g 1351 (1991)
...++++.+++.+++..|.
T Consensus 395 ~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp CTTHHHHHHHHHHHHSCGG
T ss_pred CHHHHHHHHHHHHHHhCCC
Confidence 5566777777666665554
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.1e-17 Score=216.29 Aligned_cols=442 Identities=9% Similarity=-0.065 Sum_probs=293.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 040435 873 ISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDM 952 (1991)
Q Consensus 873 ~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~ 952 (1991)
..|......+.+.|++++|+..|.++... .|+..++..+..++...|+++.|...+..+++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34555566677777777777777777763 3677777777777777777777777777777654 3345667777777
Q ss_pred HHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHH
Q 040435 953 YAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECK 1029 (1991)
Q Consensus 953 y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~ 1029 (1991)
|.+.|++++|...|+.+.. .+......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 7777777777777766532 2333334444444433333333333333322222222221111111011111111111
Q ss_pred HHHHHHHHhcC---------CCchhhhhhHHHHHH---hcCCHHHHHHHHHhcCC-----------------CchhhhhH
Q 040435 1030 SVHCVILRRAF---------ESNELVLNSLIDGYS---KCHLVELAWKLFNDVKK-----------------PDVVLWST 1080 (1991)
Q Consensus 1030 ~i~~~~~~~g~---------~~d~~v~naLI~~y~---k~G~l~~A~~lf~~m~~-----------------~d~~syn~ 1080 (1991)
.+...+..... +.+...+..+...+. +.|++++|...|+++.+ .+..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111110 111333333333333 37888888888877644 13456778
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
+...|...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8888889999999999999888754 446677778888888899999988888887764 3356678888899999999
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSM 1237 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M 1237 (1991)
+++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++++.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988753 356788888999999999999999999988743 335667888888899999999999999988
Q ss_pred HHhcCCCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1238 VQDHGVEPA----LEHYSCMVDMLAR---AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1238 ~~~~gi~P~----~~~y~~Li~~l~r---~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.+...-.+. ...+..+..+|.+ .|++++|.+.++++....+.+..+|..+...+...|+.+.|...+++++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 764322232 3488888999999 999999999999887655567888999999999999999999999999999
Q ss_pred CCCCchHHHHHH
Q 040435 1311 EAQNSAGYLLAS 1322 (1991)
Q Consensus 1311 ~P~~~~~yvlL~ 1322 (1991)
+|+++..+..+.
T Consensus 479 ~~~~~~~~~~~~ 490 (514)
T 2gw1_A 479 ARTMEEKLQAIT 490 (514)
T ss_dssp CSSHHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 998887766553
No 14
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.80 E-value=1.5e-19 Score=210.92 Aligned_cols=209 Identities=14% Similarity=0.137 Sum_probs=137.2
Q ss_pred EEEEccc--chhhHHHHHHHhhhcCCCCcEEEEEEcCcchHHHHHHHHHhcCCCCcceeeeccchhhhhhhhhhhHHHHH
Q 040435 369 YAIFSDN--VLATSVVVNSTVAHAKEPEKHVFHIVTDKLNFVAMKMWFLVNAPPKATIQIENIDSFKWLNSSYCSVLRQL 446 (1991)
Q Consensus 369 i~~~~Dn--~~~~~v~i~Sil~~~~~~~~~~Fhivtd~~~~~~~~~~f~~~~~~~~~~~~~~~~~f~~l~~~~~~~l~~l 446 (1991)
+.+.+|+ +.++.|++.|+.++++. .++++ +++++++.... ..|+++
T Consensus 8 vTl~td~~Yl~ga~vL~~SL~~~~s~-~~lvv-Lvt~~vs~~~~------------------------------~~L~~~ 55 (263)
T 3u2u_A 8 VTLTTNDAYAKGALVLGSSLKQHRTT-RRLVV-LATPQVSDSMR------------------------------KVLETV 55 (263)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHH------------------------------HHHHHH
T ss_pred EEEEECHHHHHHHHHHHHHHHHhCCC-CCEEE-EecCCCCHHHH------------------------------HHHHHc
Confidence 3455664 66999999999998764 34544 56766554332 244433
Q ss_pred hhccceEEEecCCCCCCCcCCcCCcc-cCCCCcchhhhHHHHhhcccccCCCeEEEeeCCEeEecCCchhhccCCCCCee
Q 040435 447 ESARLKEYYFKANHPSSLSAGSDNLK-YRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVN 525 (1991)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~y~Rl~ip~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~ 525 (1991)
.......+...... ..+.. +..+. + ..+|.||+++.+.+ +|||||||+|++|++||++||+++ .+
T Consensus 56 ---~~~vi~V~~l~~~~----~~~~~~~~rp~-~-~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~ 121 (263)
T 3u2u_A 56 ---FDEVIMVDVLDSGD----SAHLTLMKRPE-L-GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----EL 121 (263)
T ss_dssp ---SSEEEECCCCCCCC----HHHHHHTTCTT-G-GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SS
T ss_pred ---CCeEEEeeecCCcc----hhhhhhhcCcc-h-hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cc
Confidence 22222222111100 00011 11121 2 36889999999765 899999999999999999999997 47
Q ss_pred EeeccchhhhccccccccCCCccccCCCCCCCcccccceeEeehHHHHHhhHHHHHHHHHHhchhccccccCCCCchhhh
Q 040435 526 GAVETCKESFHRFDKYLNFSNPLISENFSPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDANEDRTLWKLGTLPPGLIT 605 (1991)
Q Consensus 526 aaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~~~~~~~~~~~dqd~~n~~ 605 (1991)
|||+|. ++ ..||||||||+|++. ++.+++.++.... ..+.++|||++|.+
T Consensus 122 aA~~d~--------------------~~---~~~fNsGv~li~p~~----~~~~~l~~~~~~~---~~~~~~DQd~LN~~ 171 (263)
T 3u2u_A 122 SAAPDP--------------------GW---PDCFNSGVFVYQPSV----ETYNQLLHLASEQ---GSFDGGDQGILNTF 171 (263)
T ss_dssp EEEECT--------------------TS---TTSEEEEEEEECCCH----HHHHHHHHHHHHH---CCTTSSHHHHHHHH
T ss_pred eEeccC--------------------CC---CccccCeEEEEcccH----HHHHHHHHHHHhc---CCCCcccHHHHHHH
Confidence 888762 11 259999999999864 4445555555432 23778999999999
Q ss_pred hcc-----cccccccccccccc-CCCcccc-ccccCCceEeecccCCCccccccc
Q 040435 606 FYN-----LTYPLDRSWHVLGL-GYDPALN-LTQIDNGAVVHYNGNNKPWLDLAV 653 (1991)
Q Consensus 606 f~~-----~~~~L~~~wN~~~~-~~~~~~~-~~~~~n~~IiHY~g~~KPW~~~a~ 653 (1991)
|.+ .++.||..||++.. .|..... ....++++||||+|..|||.....
T Consensus 172 f~~w~~~~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~g~~KPW~~~~~ 226 (263)
T 3u2u_A 172 FSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRVKPWNYTYD 226 (263)
T ss_dssp TTTTTTSCGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECCSSSCGGGSEEE
T ss_pred hccccccCeeEeCCcccccccchhccccHHHHhhcCCeEEEEECCCCcCCCCCCC
Confidence 988 78999999999731 1111111 122468899999999999976543
No 15
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.9e-17 Score=211.02 Aligned_cols=425 Identities=10% Similarity=-0.051 Sum_probs=313.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHHHHh
Q 040435 910 SLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSGLVV 986 (1991)
Q Consensus 910 T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a~~~ 986 (1991)
.+...-..+...|+++.|...+..+++.. |+..++..+..+|.+.|++++|...|+++.+ .+..+|..+..+|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 44555667788999999999999999876 6899999999999999999999999998753 467789999999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhH---HHHHHhcCCHHHH
Q 040435 987 NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSL---IDGYSKCHLVELA 1063 (1991)
Q Consensus 987 ~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naL---I~~y~k~G~l~~A 1063 (1991)
.|++++|+..|+++...+. ++......++..+........+.+.+..+...+..++....... ............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999987652 33344444444333222222222222111111111111100000 0001111111122
Q ss_pred HHHHHhcCC---------C-chhhhhHHHHhhh---hcCChHHHHHHHHHHHH-----CCCCC--------CHHHHHHHH
Q 040435 1064 WKLFNDVKK---------P-DVVLWSTMIAGFT---LCGRPREAIAVFQEMNQ-----AQEKP--------NAITIINLL 1117 (1991)
Q Consensus 1064 ~~lf~~m~~---------~-d~~syn~LI~~y~---~~g~~eeAl~lf~~M~~-----~Gv~P--------d~~T~~~lL 1117 (1991)
...+..... | +...|..+...+. +.|++++|+.+|+++.+ ....| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222211 1 2334444444444 48999999999999987 32222 234666777
Q ss_pred HHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHH
Q 040435 1118 EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHE 1194 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~e 1194 (1991)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999999987654 78888999999999999999999998865 367789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1195 ALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1195 Al~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
|+..|+++.+.. +.+..++..+...+...|++++|.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999998854 335677888889999999999999999999774 44 5678999999999999999999999988
Q ss_pred ccCCCCC------HHHHHHHHHHHHH---cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1274 PDNLKAT------ASAWGALLSACRS---YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1274 ~~~~~pd------~~~~~~Ll~a~~~---~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
....+.+ ..+|..+...+.. .|+++.|...++++++++|+++..+..++.+|...|++++|........+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6521112 3489999999999 99999999999999999999999999999999999999999987765543
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.73 E-value=1.6e-15 Score=197.53 Aligned_cols=432 Identities=10% Similarity=-0.006 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 872 VISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLID 951 (1991)
Q Consensus 872 ~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~ 951 (1991)
...|..+...+.+.|++++|++.|+++.+. ...+...+..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456677778888889999999999888874 23356778888888888889999998888888765 346778888999
Q ss_pred HHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCCHHHHHHHHHHHhccCCh
Q 040435 952 MYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKG------VNEVDEITLVNILQICKCFVHP 1025 (1991)
Q Consensus 952 ~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~------Gi~Pd~~T~~~lL~a~~~~g~~ 1025 (1991)
+|.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+. ..+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG----IFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH----TSCH
T ss_pred HHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH----hcCh
Confidence 9999999999999997443 22223333455666667778899999998653 23455555444433 2222
Q ss_pred hhHHHHHHHHHHhcCCCchh---hhhhHHHHHHhc--------CCHHHHHHHHHhcCC--Cc--------hhhhhHHHHh
Q 040435 1026 MECKSVHCVILRRAFESNEL---VLNSLIDGYSKC--------HLVELAWKLFNDVKK--PD--------VVLWSTMIAG 1084 (1991)
Q Consensus 1026 ~~a~~i~~~~~~~g~~~d~~---v~naLI~~y~k~--------G~l~~A~~lf~~m~~--~d--------~~syn~LI~~ 1084 (1991)
+.+...+ ......+.. ....+...|... |++++|..+|+++.+ |+ ..+|..+...
T Consensus 177 ~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 177 HLEVSSV----NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp HHHHHTS----CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 2221111 111112221 444444444433 478888888888865 33 2346667777
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
+...|++++|+..|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88889999999999998875 4667777778888888899999999888888765 33566788888888899999999
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc
Q 040435 1165 RKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH 1241 (1991)
Q Consensus 1165 ~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~ 1241 (1991)
...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+..
T Consensus 330 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 330 KEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999887764 356788888888889999999999998888753 3345677788888888899999999988876532
Q ss_pred CCCC----CHHHHHHHHHHHHHc----------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1242 GVEP----ALEHYSCMVDMLARA----------GELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1242 gi~P----~~~~y~~Li~~l~r~----------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
.-.+ ....+..+..+|.+. |++++|...++++.+..+.+..+|..+...+...|+.+.|...++++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 1111 123345556777777 88999999988887655567788888888888999999999999999
Q ss_pred HhcCCCCchHHH
Q 040435 1308 LELEAQNSAGYL 1319 (1991)
Q Consensus 1308 lel~P~~~~~yv 1319 (1991)
+++.|..+....
T Consensus 489 l~~~~~~~~~~~ 500 (537)
T 3fp2_A 489 AILARTMDEKLQ 500 (537)
T ss_dssp HHHC--CHHHHH
T ss_pred HHhCCCcHHHHH
Confidence 999888766543
No 17
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.72 E-value=4.5e-15 Score=188.71 Aligned_cols=360 Identities=12% Similarity=0.043 Sum_probs=225.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCC---CCHhHHHHHHHH
Q 040435 907 DGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ---KNKVSWNSALSG 983 (1991)
Q Consensus 907 d~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~dv~s~n~LI~a 983 (1991)
+...+..+...+.+.|+++.|..++..+++.. +.+..++..+..+|.+.|++++|...|+.+.+ .+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34556666666777777777777777776553 23566666777777777777777777766543 345666677777
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC
Q 040435 984 LVVNEKYSEALSLLYSMGKGVNEVDE----ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHL 1059 (1991)
Q Consensus 984 ~~~~g~~~eAl~lf~~M~~~Gi~Pd~----~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~ 1059 (1991)
|.+.|++++|+..|+++... .|+. ..+..+...+.. ..+..+...|.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 77777777777777776542 3332 222222221100 011223344566667
Q ss_pred HHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHH
Q 040435 1060 VELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1060 l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
+++|...|+++.+ .+...|..+...|.+.|++++|++.|+++.+.
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------------------- 206 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-------------------------------- 206 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------
Confidence 7777666666543 34555666666666666666666666666543
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHH------------HHHHHHcCCHHHHHHHHHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAM------------VAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~L------------I~ay~~~G~~~eAl~lf~e 1201 (1991)
. +.+..++..+...|.+.|++++|...|+++.+ | +...|..+ ...|.+.|++++|+.+|++
T Consensus 207 ---~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 207 ---K-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp ---H-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 12334455555555666666666666655542 2 23333333 6778888888888888888
Q ss_pred HHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1202 MKLGGLQPN-----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1202 M~~~Gi~Pd-----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+.+ +.|+ ...+..+..++.+.|++++|.++++.+.+ +.| +...|..+..+|.+.|++++|.+.++++.+
T Consensus 283 ~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 283 VMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 876 3455 34567777788888888888888888765 345 577888888888888888888888888876
Q ss_pred CCCCCHHHHHHHHHH------------HHHcC-----ChhHHHHHHHH-HHhcCCCCch----------HHHHHHHHHHh
Q 040435 1276 NLKATASAWGALLSA------------CRSYG-----NTELGAGATSR-ILELEAQNSA----------GYLLASSMYAA 1327 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a------------~~~~g-----~~e~A~~~~e~-llel~P~~~~----------~yvlL~~lya~ 1327 (1991)
..+.+..+|..|..+ |...| +.+++.+.+++ +++..|++.. .+..++.+|..
T Consensus 358 ~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 444456677666633 33334 56777888886 7888887532 34455666666
Q ss_pred CCCchh
Q 040435 1328 GGLWVE 1333 (1991)
Q Consensus 1328 ~G~~~e 1333 (1991)
.|+-+.
T Consensus 438 L~d~~~ 443 (450)
T 2y4t_A 438 LSDPEM 443 (450)
T ss_dssp SSGGGG
T ss_pred hCCHHH
Confidence 666444
No 18
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=6.5e-15 Score=191.65 Aligned_cols=432 Identities=9% Similarity=-0.038 Sum_probs=272.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 040435 773 VSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMY 852 (1991)
Q Consensus 773 ~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~y 852 (1991)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.+..+++... .+...+..+...|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 345555666666667777777776666543 23455666666666666666666666666665542 2333444444444
Q ss_pred hh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 040435 853 VD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVH 931 (1991)
Q Consensus 853 ak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~ 931 (1991)
.. |++++|...|+.+. .+....+..+..+...+...+|+..+.++... .|+.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~---~~~~----------------------- 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSK---DEGR----------------------- 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh---Cccc-----------------------
Confidence 44 56666666554331 11112222333444445556666666666432 1100
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHh---HHHHHHHHHHh--------cCCHHHHHHHHHHH
Q 040435 932 GLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV---SWNSALSGLVV--------NEKYSEALSLLYSM 1000 (1991)
Q Consensus 932 ~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~---s~n~LI~a~~~--------~g~~~eAl~lf~~M 1000 (1991)
.....|+. ..+..|....+.+.+...+......+.. .+..+...+.. .|++++|+.+|+++
T Consensus 157 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~ 228 (537)
T 3fp2_A 157 ----GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228 (537)
T ss_dssp ------CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 01112222 2333445566667777777666554322 33333322222 24677788888777
Q ss_pred hcCCCCCCHH-HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchhh
Q 040435 1001 GKGVNEVDEI-TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVVL 1077 (1991)
Q Consensus 1001 ~~~Gi~Pd~~-T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~s 1077 (1991)
... .|+.. .+..+ ..++..+...|...|++++|...|++..+ |+...
T Consensus 229 l~~--~p~~~~~~~~~----------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 278 (537)
T 3fp2_A 229 LSA--NTVDDPLRENA----------------------------ALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNS 278 (537)
T ss_dssp HC----CCCHHHHHHH----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHH--CCCcchhhHHH----------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchH
Confidence 653 23211 11100 11234455566777777888777777653 55667
Q ss_pred hhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1078 WSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1078 yn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
|..+...|...|++++|+..|.++.+.. ..+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+
T Consensus 279 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 279 YIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 7777778888888888888888877643 2345667777777888888888888888887764 3356788889999999
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc-----
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGG-----LQPNAVTTLSVLSACSHG----- 1224 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G-----i~Pd~~T~~~LL~ac~~~----- 1224 (1991)
.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. ..-....+......+...
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 436 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999998864 456789999999999999999999999987643 111122244445667777
Q ss_pred -----CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1225 -----GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1225 -----G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
|++++|..+|+.+.+. .| +...+..+..+|.+.|++++|.+.++++.+.
T Consensus 437 ~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 437 TQLDEEKFNAAIKLLTKACEL---DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp --CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHhHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999873 55 5788999999999999999999999998763
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.67 E-value=9.3e-12 Score=168.37 Aligned_cols=549 Identities=11% Similarity=0.028 Sum_probs=365.9
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHhhcCC---------------CC----------------hHH------HHHHH
Q 040435 737 YESFTSIGNALMDFYMKWRFPDSAVAVFDDCIC---------------RD----------------SVS------WNIMI 779 (1991)
Q Consensus 737 ~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~---------------~d----------------~~s------~n~LI 779 (1991)
+..|+.+....|.+.++.|++.+..++-.+-.. +| .+. ....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 567889999999999999999998888754310 11 111 12335
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH
Q 040435 780 QGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLV-------------IQACRCLGAYYEGLQVHGYIIRSGLWAVHSVQN 846 (1991)
Q Consensus 780 ~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~l-------------L~a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~n 846 (1991)
.+|++.-++..+-.+...+...+ -++.....+ +..+-+.+++..-...++.-+..| ..+..++|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hn 877 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHN 877 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 55555544444433333333221 122233333 333344445555555566666666 45788999
Q ss_pred HHHHHHhh--CCHHHHHH--------HHHhc-CCCCHHH----------HHHHHHHHHHcCChHHH-H------------
Q 040435 847 SVLSMYVD--ADMECARK--------LFDEM-CERDVIS----------WSVMIGGYVQSAEAFSG-L------------ 892 (1991)
Q Consensus 847 aLi~~yak--g~~e~A~~--------vf~~m-~~~d~~s----------yn~LI~a~~~~G~~~eA-l------------ 892 (1991)
+|...|.. .+.+.=+. +..+- .++|... --.||...-++|.+... .
T Consensus 878 alakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 99999886 34443111 11111 1122211 11233333333322211 1
Q ss_pred -----------HHHHHHHhC---CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 040435 893 -----------RLFRQMVSG---FKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRG--LGCDLFVGNSLIDMYAKC 956 (1991)
Q Consensus 893 -----------~lf~~M~~~---~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g--~~pd~~v~naLI~~y~k~ 956 (1991)
++.++.... ....|+. ....++++...|...++.++++.++-.+ +.-+....+.|+.+..+.
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~Pee--Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka 1035 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEE--VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA 1035 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHH--hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 122221110 0123333 3556777888888888888888887332 123456677777777776
Q ss_pred CChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 040435 957 KDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL 1036 (1991)
Q Consensus 957 G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~ 1036 (1991)
+..+.....++...-+ ...+...+...|.+++|..+|++... .......++. ..+++++|.++...+
T Consensus 1036 -D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv- 1102 (1630)
T 1xi4_A 1036 -DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC- 1102 (1630)
T ss_pred -ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc-
Confidence 4455555555554323 34467778889999999999998621 1122233332 567788887776643
Q ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1037 RRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1037 ~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
.+..+|..+..++.+.|++++|...|.+. .|...|..++..|.+.|++++|.+.|...++.. ++....+.+
T Consensus 1103 -----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1103 -----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred -----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 34778889999999999999999999765 567788889999999999999999998766643 333233358
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHH
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEAL 1196 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl 1196 (1991)
..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|+
T Consensus 1174 afaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHH
Confidence 88889988887544332 2 234455667889999999999999999986 58999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC
Q 040435 1197 ALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN 1276 (1991)
Q Consensus 1197 ~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~ 1276 (1991)
+.+++. -+..+|..+-.+|...|.+..|..+... +.-+.+.+..++..|.+.|.+++|..+++.....
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999876 3568899999999999999999887653 3346677889999999999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCC-----CCchHHHHHHHHHHhCCCchhHHH
Q 040435 1277 LKATASAWGALLSACRSYG--NTELGAGATSRILELEA-----QNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1277 ~~pd~~~~~~Ll~a~~~~g--~~e~A~~~~e~llel~P-----~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
-+.....|.-|...+.+.. +..++.+.|..-..+.| +++..|--+.-+|.+.|.|+.|..
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3334557777777776653 67777777777777766 677788889999999999998764
No 20
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=1.8e-13 Score=167.02 Aligned_cols=325 Identities=10% Similarity=-0.014 Sum_probs=213.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHH
Q 040435 973 NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLID 1052 (1991)
Q Consensus 973 dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~ 1052 (1991)
|+..|..+...+.+.|++++|+..|+++.... ..+..++..+...+...|+++.|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45667778888888888888888888876532 1123444444555555555555555555555442 123344444555
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C----chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccCh
Q 040435 1053 GYSKCHLVELAWKLFNDVKK--P----DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATEL 1126 (1991)
Q Consensus 1053 ~y~k~G~l~~A~~lf~~m~~--~----d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~l 1126 (1991)
+|.+.|++++|...|+++.+ | +...|..+...+ . ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 55555555555555554432 2 111121110000 0 00011113445566666
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMK 1203 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~ 1203 (1991)
+.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666553 23456677788888888888888888887764 366788888888888899999999888887
Q ss_pred HCCCCCCH-HHHH------------HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H----HHHHHHHHHHHHcCCHHH
Q 040435 1204 LGGLQPNA-VTTL------------SVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L----EHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1204 ~~Gi~Pd~-~T~~------------~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~----~~y~~Li~~l~r~G~~ee 1265 (1991)
+. .|+. ..+. .+...+...|++++|.+.++.+.+. .|+ . ..+..+..++.+.|++++
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence 64 3432 2222 2255677889999999999988764 343 2 335567888889999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
|.+.++++.+..+.+..+|..+...+...|++++|...++++++++|+++..+..+..++...
T Consensus 291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999887654557888999999999999999999999999999999888887777765543
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=9.3e-11 Score=158.83 Aligned_cols=528 Identities=9% Similarity=0.016 Sum_probs=353.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHhhcCC------CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 040435 742 SIGNALMDFYMKWRFPDSAVAVFDDCIC------RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQ 815 (1991)
Q Consensus 742 ~~~n~Li~~y~k~G~~~~A~~lfd~m~~------~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~ 815 (1991)
.--...+..|...|.+.+|.++++++.- .+...-|.++..-.+. +..+..++..+.... ....+-.
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~ 1057 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIAN 1057 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHH
Confidence 3346677888899999999999988742 2335566677666666 556666666654321 1334667
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 040435 816 ACRCLGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRL 894 (1991)
Q Consensus 816 a~~~~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~l 894 (1991)
.|...|.+++|.++++... ......+.++. . +++++|.++.++.. +..+|..+..++...|++++|++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7888999999999998752 11111222222 4 78999999988774 466888999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCH
Q 040435 895 FRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNK 974 (1991)
Q Consensus 895 f~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv 974 (1991)
|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++..... ..++.
T Consensus 1128 YiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ 1195 (1630)
T 1xi4_A 1128 YIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNN 1195 (1630)
T ss_pred HHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCH
Confidence 9653 356778889999999999999999998887755 44444556999999999988655443 45577
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHH
Q 040435 975 VSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGY 1054 (1991)
Q Consensus 975 ~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y 1054 (1991)
..|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+..+.+ .+..+|..+-.++
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 77888889999999999999999985 47889999999999999998888765 4567888888888
Q ss_pred HhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhhccChHHHHH
Q 040435 1055 SKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN---AITIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1055 ~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd---~~T~~~lL~a~a~~g~le~a~~ 1131 (1991)
...|++..|......+. -+...+..++..|.+.|.+++|+.+++.-.. +.+. .+|....+.+-.+.+++.++.+
T Consensus 1261 ve~~Ef~LA~~cgl~Ii-v~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hhhhHHHHHHHHHHhhh-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 89999999988876532 2444566888999999999999999976653 3332 2233344444444445555444
Q ss_pred HHHHHHHhccc------cchhHHHHHHHHHHhcCCHHHHHHHH-------------Hhcc--CCCHhHHHHHHHHHHHcC
Q 040435 1132 AHGIAIRRCLA------EEVAVGTAVVDMYAKCGAIEASRKAF-------------DQIS--RKNIVSWSAMVAAYGMNG 1190 (1991)
Q Consensus 1132 i~~~~~k~g~~------~d~~v~naLI~~y~k~G~~e~A~~lf-------------~~m~--~~d~~s~n~LI~ay~~~G 1190 (1991)
.+.. +.+++ .+..+|..++-.|.+-|+++.|.... .+.. ..|+..|...+.-|....
T Consensus 1338 ~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1338 LFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4442 22222 35678889999999999999988322 2221 146677777777777665
Q ss_pred ---------------CHHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHHHhcCCHHHHHHHHHHhHHhc-
Q 040435 1191 ---------------LAHEALALVAEMKLGGLQPNAVTTLSVL-------------SACSHGGLVEEGLSFFNSMVQDH- 1241 (1991)
Q Consensus 1191 ---------------~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL-------------~ac~~~G~~e~A~~i~~~M~~~~- 1241 (1991)
+.+++.++|... |.-|-..-|..-+ ..+....+++.-+.-. +.+
T Consensus 1416 P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si----~~~~ 1488 (1630)
T 1xi4_A 1416 PLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSI----DAYD 1488 (1630)
T ss_pred hHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHH----hhcc
Confidence 666666666521 1122222221111 1111111111110000 000
Q ss_pred CC---------C-CCHHHHHHHH-HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1242 GV---------E-PALEHYSCMV-DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1242 gi---------~-P~~~~y~~Li-~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
++ + -...-+..+. .+|.+.|++..|.++..+.. .|.-.+.+.+..|+.+.+++++.-..+.
T Consensus 1489 nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~--------l~~dAm~~a~~S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1489 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS--------LYKDAMQYASESKDTELAEELLQWFLQE 1560 (1630)
T ss_pred CcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc--------CHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 00 0 0111122233 34455589999998888765 3555677788889998888877776666
Q ss_pred CCCCchHHHHHHHHHHhCCCchhHHH
Q 040435 1311 EAQNSAGYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~G~~~ea~~ 1336 (1991)
.+...|+...-.|...=+-+.+.+
T Consensus 1561 --~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1561 --EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred --CChhHHHHHHHHHhccCCchHHHH
Confidence 556667777777777777666655
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.60 E-value=1.5e-13 Score=166.05 Aligned_cols=289 Identities=11% Similarity=0.002 Sum_probs=237.1
Q ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1040 FESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1040 ~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
...+..++..+...+...|++++|.++|+++.+ .+...+..++..+.+.|+.++|+.+++++.+.. ..+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345666777788888888999999998888764 344566677788888899999999999888743 2245566777
Q ss_pred HHHHhhcc-ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH
Q 040435 1117 LEACSVAT-ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA 1192 (1991)
Q Consensus 1117 L~a~a~~g-~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~ 1192 (1991)
...+...| +.+.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8888998888888765 33567788899999999999999999998864 3467788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-------CCCHHHHHHHHHHHHHcCCHHH
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGV-------EPALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi-------~P~~~~y~~Li~~l~r~G~~ee 1265 (1991)
++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+.+...- ......+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998753 446778888999999999999999999998764211 2346789999999999999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH-HhCCCc
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY-AAGGLW 1331 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly-a~~G~~ 1331 (1991)
|.+.++++.+..+.+..+|..+...+...|+.++|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999987655567889999999999999999999999999999999999999999988 455654
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.60 E-value=6.9e-13 Score=161.93 Aligned_cols=305 Identities=11% Similarity=-0.005 Sum_probs=226.8
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhh
Q 040435 1010 ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFT 1086 (1991)
Q Consensus 1010 ~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~ 1086 (1991)
..+..+-..+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 345555566667777777777777776654 23456666777777777777777777776653 24556677777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHH
Q 040435 1087 LCGRPREAIAVFQEMNQAQEKP---NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEA 1163 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~~Gv~P---d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~ 1163 (1991)
+.|++++|+..|+++.+. .| +.......+. .+.. ......+...|...|++++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHH
Confidence 777777777777777653 34 2221111110 0000 0112334678889999999
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1164 SRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1164 A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.++.+.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~- 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK- 216 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 9999998864 467889999999999999999999999999753 44677888999999999999999999999976
Q ss_pred cCCCCC-HHHHH------------HHHHHHHHcCCHHHHHHHHHHCccCCCCCHH----HHHHHHHHHHHcCChhHHHHH
Q 040435 1241 HGVEPA-LEHYS------------CMVDMLARAGELDIAIDLINQMPDNLKATAS----AWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1241 ~gi~P~-~~~y~------------~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~----~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
..|+ ...+. .+...+.+.|++++|.+.++++.+..+.+.. .|..+...+...|+.+.|...
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 --LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp --HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3454 33332 3367799999999999999998764344443 355677889999999999999
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1304 TSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1304 ~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988776544
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.54 E-value=4.6e-13 Score=165.02 Aligned_cols=281 Identities=9% Similarity=-0.043 Sum_probs=219.9
Q ss_pred HHhcCCHHHHHH-HHHhcCC-----C--chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccC
Q 040435 1054 YSKCHLVELAWK-LFNDVKK-----P--DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1054 y~k~G~l~~A~~-lf~~m~~-----~--d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
|.-.|++++|.. .|++..+ | +...|..+...|.+.|++++|+..|+++.+.. ..+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334567777777 7775443 1 34567788888888888888888888888753 3355677777788888888
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHH---------------HHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSA---------------MVAAYG 1187 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~---------------LI~ay~ 1187 (1991)
++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 888888888888765 34667788888999999999999999988764 2 2222221 233344
Q ss_pred HcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQ-PNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDI 1265 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~ee 1265 (1991)
..|++++|+..|+++.+.... ++..++..+...+...|++++|.++++.+++. .| +...|..+..+|.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 889999999999999875321 14788999999999999999999999999763 55 47899999999999999999
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----------chHHHHHHHHHHhCCCchhH
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN-----------SAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-----------~~~yvlL~~lya~~G~~~ea 1334 (1991)
|.+.++++.+..+.+..+|..+..++...|+++.|...+++++++.|++ +..+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999876556678999999999999999999999999999999988 78899999999999999999
Q ss_pred HHHHH
Q 040435 1335 SGTRL 1339 (1991)
Q Consensus 1335 ~~vr~ 1339 (1991)
..+..
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98765
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=2.2e-11 Score=159.04 Aligned_cols=394 Identities=9% Similarity=0.023 Sum_probs=243.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 040435 942 DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ--K-NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQI 1018 (1991)
Q Consensus 942 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a 1018 (1991)
+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.... .|+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence 3444554554 2445555555555555433 2 3344555555555555555555555555442 2443333333321
Q ss_pred H-hccCChhhHHH----HHHHHHHh-cCCC-chhhhhhHHHHHHh---------cCCHHHHHHHHHhcCC-Cch---hhh
Q 040435 1019 C-KCFVHPMECKS----VHCVILRR-AFES-NELVLNSLIDGYSK---------CHLVELAWKLFNDVKK-PDV---VLW 1078 (1991)
Q Consensus 1019 ~-~~~g~~~~a~~----i~~~~~~~-g~~~-d~~v~naLI~~y~k---------~G~l~~A~~lf~~m~~-~d~---~sy 1078 (1991)
. ...++.+.+.+ ++..+++. |..+ +..+|...+....+ .|+++.|+.+|++..+ |.. ..|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 1 22334444333 34333332 3322 33445554444433 5667777777776554 221 223
Q ss_pred hHHHHh---h----------hhcCChHHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHhh----cc
Q 040435 1079 STMIAG---F----------TLCGRPREAIAVFQEMN------QAQ---EKPNA--------ITIINLLEACSV----AT 1124 (1991)
Q Consensus 1079 n~LI~~---y----------~~~g~~eeAl~lf~~M~------~~G---v~Pd~--------~T~~~lL~a~a~----~g 1124 (1991)
...... + .+.+++.+|..++.++. +.. +.|+. ..|...+..... .+
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 221110 0 12445667777666532 111 23431 233333322211 12
Q ss_pred Ch----HHHHHHHHHHHHhccccchhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-CHhHHHHH
Q 040435 1125 EL----SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK-------CGAIE-------ASRKAFDQISR---K-NIVSWSAM 1182 (1991)
Q Consensus 1125 ~l----e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k-------~G~~e-------~A~~lf~~m~~---~-d~~s~n~L 1182 (1991)
+. +.+..+++.+++.. +.+..+|..+...+.+ .|+++ +|..+|++..+ | +...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 22 35566777777753 4467778878887775 68887 89999998764 4 57889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHH-HH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQPNA--VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDM-LA 1258 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~--~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~-l~ 1258 (1991)
+..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+++|+..++ ..|. ...|...+.+ +.
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHH
Confidence 9999999999999999999998 45642 4788888888889999999999998875 3443 3334333322 34
Q ss_pred HcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch----HHHHHHHHHHhCCCchhH
Q 040435 1259 RAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA----GYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~----~yvlL~~lya~~G~~~ea 1334 (1991)
..|+.++|.++|++..+..+.+..+|..++......|+.+.|..+++++++..|.++. .+..........|+.+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 6899999999999887655557899999999999999999999999999998776654 555567777888999999
Q ss_pred HHHHHHHHHc
Q 040435 1335 SGTRLLAKER 1344 (1991)
Q Consensus 1335 ~~vr~~m~~~ 1344 (1991)
..+...+.+.
T Consensus 483 ~~~~~r~~~~ 492 (530)
T 2ooe_A 483 LKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.51 E-value=2.8e-13 Score=167.54 Aligned_cols=321 Identities=13% Similarity=0.050 Sum_probs=143.7
Q ss_pred hcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHH
Q 040435 955 KCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCV 1034 (1991)
Q Consensus 955 k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~ 1034 (1991)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996664 8999999999999999999999653 5777899999999999999999997777
Q ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040435 1035 ILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII 1114 (1991)
Q Consensus 1035 ~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~ 1114 (1991)
+++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 4557888899999999999999888775 377789999999999999999999999977 3688
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHH
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHE 1194 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~e 1194 (1991)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ........++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8889999999999988888776 367888999999999999999987777655 333334468888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHHcCCHHHH
Q 040435 1195 ALALVAEMKLGGLQPNAVTTLSVLSACS--HGGLVEEGLSFFNSMVQDHGVEP------ALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1195 Al~lf~eM~~~Gi~Pd~~T~~~LL~ac~--~~G~~e~A~~i~~~M~~~~gi~P------~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
|+.+++...... +--...|+.+--+++ +-+.+.+.++.|.. +-.+.| +..+|.-++-+|..-+.++.|
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 999998877433 223334554444444 44555556555542 223444 356788999999999999988
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
...+-+-+. +..--........+-.|.|.--++..=-++..|
T Consensus 302 ~~tm~~h~~----~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 302 IITMMNHPT----DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHSTT----TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHhCCh----hhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 876655432 211122233333445555555444444444433
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.51 E-value=7.8e-13 Score=163.62 Aligned_cols=281 Identities=10% Similarity=0.006 Sum_probs=119.5
Q ss_pred hcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 040435 753 KWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGY 832 (1991)
Q Consensus 753 k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~ 832 (1991)
++|++++|...+++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7889999999999997765 9999999999999999999999753 6788999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHH
Q 040435 833 IIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSL 911 (1991)
Q Consensus 833 ~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~ 911 (1991)
..+. .+++.+.+.|+.+|++ |+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~ 151 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNF 151 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TCH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhH
Confidence 8774 4557889999999999 999999888864 78889999999999999999999999987 258
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHH
Q 040435 912 VSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYS 991 (1991)
Q Consensus 912 ~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~ 991 (1991)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ....-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88999999999999998888877 378899999999999999999988877765 33333446888899999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHH--HHHHhccCChhhHHHHHHHHHHhcCCC------chhhhhhHHHHHHhcCCHHHH
Q 040435 992 EALSLLYSMGKGVNEVDEITLVNI--LQICKCFVHPMECKSVHCVILRRAFES------NELVLNSLIDGYSKCHLVELA 1063 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T~~~l--L~a~~~~g~~~~a~~i~~~~~~~g~~~------d~~v~naLI~~y~k~G~l~~A 1063 (1991)
+|..+++...... .-....|+-+ +-+--+.+.+.+..+.|.. +.++++ +...|.-++-.|.+-++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 9999998876432 2223333333 3333333444444443321 112222 345666677777777777766
Q ss_pred HHH
Q 040435 1064 WKL 1066 (1991)
Q Consensus 1064 ~~l 1066 (1991)
...
T Consensus 302 ~~t 304 (449)
T 1b89_A 302 IIT 304 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 28
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=2.8e-12 Score=154.84 Aligned_cols=261 Identities=10% Similarity=0.020 Sum_probs=224.0
Q ss_pred CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHH
Q 040435 1073 PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVV 1152 (1991)
Q Consensus 1073 ~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI 1152 (1991)
.+...+..+...+...|++++|+++|+++.+.. ..+...+..+...+...|+.+.|...+..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455667788888999999999999999998753 2233455567778889999999999999998864 34677888899
Q ss_pred HHHHhcC-CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 040435 1153 DMYAKCG-AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G-~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e 1228 (1991)
..|...| ++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998865 356789999999999999999999999998754 234566777888999999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC---------CCCHHHHHHHHHHHHHcCChh
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNL---------KATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~---------~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+|.++++.+.+ ..| +...+..+..+|.+.|++++|.+.++++.... +....+|..+...+...|+.+
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999875 455 57889999999999999999999999876421 445679999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|...+++++++.|+++..+..++.+|...|++++|....+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999999999999999999999999999999988766
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.49 E-value=4.9e-11 Score=154.23 Aligned_cols=365 Identities=8% Similarity=-0.008 Sum_probs=260.6
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHhccCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHH
Q 040435 942 DLFVGNSLIDMYAK----CKDTDSAFKVFSEMPQ-KNKVSWNSALSGLVV----NEKYSEALSLLYSMGKGVNEVDEITL 1012 (1991)
Q Consensus 942 d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~dv~s~n~LI~a~~~----~g~~~eAl~lf~~M~~~Gi~Pd~~T~ 1012 (1991)
+......|-.+|.. .++.++|...|+...+ .+...+..|-..|.. .++.++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44444455555555 5666666666654432 345555555555665 566666666666665543 33333
Q ss_pred HHHHHHHhc----cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh----cCCHHHHHHHHHhcCC-CchhhhhHHHH
Q 040435 1013 VNILQICKC----FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK----CHLVELAWKLFNDVKK-PDVVLWSTMIA 1083 (1991)
Q Consensus 1013 ~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k----~G~l~~A~~lf~~m~~-~d~~syn~LI~ 1083 (1991)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444 556666666666666654 34555666666665 6778888888876653 45667777777
Q ss_pred hhhh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHH
Q 040435 1084 GFTL----CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMY 1155 (1991)
Q Consensus 1084 ~y~~----~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y 1155 (1991)
.|.+ .++.++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.| +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7776 788888888888877754 44455555555554 678888888888877765 344566677778
Q ss_pred Hh----cCCHHHHHHHHHhccC-CCHhHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 040435 1156 AK----CGAIEASRKAFDQISR-KNIVSWSAMVAAYGMN-----GLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG 1225 (1991)
Q Consensus 1156 ~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~-----G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G 1225 (1991)
.. .++.++|...|++..+ .+...+..|...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 77 8999999999998865 4667888888888887 89999999999999875 4556666766776656
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----c
Q 040435 1226 ---LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS----Y 1294 (1991)
Q Consensus 1226 ---~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~ 1294 (1991)
+.++|.++|++..+. .+...+..|..+|.. .+++++|.+++++..+. .++..+..|...+.. .
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCC
Confidence 789999999998763 467888899999998 89999999999998763 367889999999988 8
Q ss_pred CChhHHHHHHHHHHhcCCC---CchHHHHHHHHHHh
Q 040435 1295 GNTELGAGATSRILELEAQ---NSAGYLLASSMYAA 1327 (1991)
Q Consensus 1295 g~~e~A~~~~e~llel~P~---~~~~yvlL~~lya~ 1327 (1991)
++.++|...++++++.+|+ ++.....|+.++..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999999954 77777777766654
No 30
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=3.9e-11 Score=156.77 Aligned_cols=419 Identities=8% Similarity=0.037 Sum_probs=264.5
Q ss_pred CchHHHHHHHHHHhh-CCHHHHHHHHHhcCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 040435 840 AVHSVQNSVLSMYVD-ADMECARKLFDEMCE--R-DVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVL 915 (1991)
Q Consensus 840 ~d~~v~naLi~~yak-g~~e~A~~vf~~m~~--~-d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL 915 (1991)
.+...|..++.. .+ |+++.|+.+|+++.+ | +...|...+..+.+.|+.++|..+|++.... .|+...+...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 356677777774 44 888888888888743 3 5667888888888888888888888888763 46666665555
Q ss_pred HHH-HccCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcC
Q 040435 916 KAC-TNLRDLTMGRM----VHGLVIYR-GLGC-DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNE 988 (1991)
Q Consensus 916 ~a~-~~~g~~~~a~~----l~~~m~k~-g~~p-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g 988 (1991)
... ...|+.+.|++ +++..++. |..| +..+|...+....+.... + .+.+.|
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~-------------~---------~~~~~~ 144 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV-------------G---------SYAENQ 144 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC-------------S---------STTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc-------------c---------cHHHHh
Confidence 432 34456655554 55544432 4333 344555555544331000 0 011245
Q ss_pred CHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHH
Q 040435 989 KYSEALSLLYSMGKGVNEVDE---ITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWK 1065 (1991)
Q Consensus 989 ~~~eAl~lf~~M~~~Gi~Pd~---~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~ 1065 (1991)
++++|..+|++.... |+. ..|..........+. .+...++. .+.++++.|..
T Consensus 145 ~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~ 199 (530)
T 2ooe_A 145 RITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARR 199 (530)
T ss_dssp HHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHH
Confidence 555666666665541 221 111111110000000 00001110 01223334443
Q ss_pred HHHh-------cC------CCc--------hhhhhHHHHhhhhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHH
Q 040435 1066 LFND-------VK------KPD--------VVLWSTMIAGFTLC----GRP----REAIAVFQEMNQAQEKPNAITIINL 1116 (1991)
Q Consensus 1066 lf~~-------m~------~~d--------~~syn~LI~~y~~~----g~~----eeAl~lf~~M~~~Gv~Pd~~T~~~l 1116 (1991)
++.. +. .|+ ...|...+.....+ ++. ++|+.+|++..... .-+...|...
T Consensus 200 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~ 278 (530)
T 2ooe_A 200 VAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEA 278 (530)
T ss_dssp HHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3332 11 011 23455544332221 222 36777888877641 2244555555
Q ss_pred HHHHhh-------ccChH-------HHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CH-hH
Q 040435 1117 LEACSV-------ATELS-------SSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NI-VS 1178 (1991)
Q Consensus 1117 L~a~a~-------~g~le-------~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~-~s 1178 (1991)
...+.. .|+++ .|..++..+++.-.+.+..++..++..+.+.|++++|..+|+++.+ | +. ..
T Consensus 279 ~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 358 (530)
T 2ooe_A 279 AQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHH
T ss_pred HHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHH
Confidence 555543 68876 7888888887643455688899999999999999999999998864 4 33 58
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDM 1256 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~ 1256 (1991)
|..++..+.+.|+.++|.++|++..+.. +.+...|...... +...|+.++|..+|+..++. .| +...|..+++.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHH
Confidence 9999999999999999999999998753 2223333332222 33689999999999999874 45 57889999999
Q ss_pred HHHcCCHHHHHHHHHHCccCC--CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1257 LARAGELDIAIDLINQMPDNL--KA--TASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~--~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+.+.|+.++|..++++..... .| ...+|...+.....+|+.+.+..+.+++++..|++
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 999999999999999987632 22 25599999999999999999999999999998853
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.47 E-value=3.2e-12 Score=153.76 Aligned_cols=242 Identities=11% Similarity=0.055 Sum_probs=175.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHH
Q 040435 1050 LIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1050 LI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a 1129 (1991)
+..+|...|+++.|...++....|+..++..+...|...|+.++|++.++++...+..|+
T Consensus 40 l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-------------------- 99 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-------------------- 99 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS--------------------
T ss_pred HHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC--------------------
Confidence 344555555555555544443334444455555555555555555555555554443343
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP 1209 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P 1209 (1991)
+..++..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .|
T Consensus 100 --------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 100 --------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred --------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 333445566778889999999999998 467889999999999999999999999999885 46
Q ss_pred CHHHH---HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1210 NAVTT---LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1210 d~~T~---~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
+.... .+.+..+...|++++|..+|+++++. ...+...+..+..++.+.|++++|.+.++++.+..+.++.+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 64321 12233344568999999999999875 33468899999999999999999999999987755668899999
Q ss_pred HHHHHHHcCChhH-HHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1287 LLSACRSYGNTEL-GAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~-A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
++..+...|+.++ +.+.++++++++|+++... .++.+.+.++++.
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHH
Confidence 9999999998865 6789999999999988643 4566666666544
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.47 E-value=1.3e-12 Score=161.44 Aligned_cols=261 Identities=10% Similarity=-0.051 Sum_probs=207.1
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887653 2356677777778888888888888888887764 345677888888
Q ss_pred HHHhcCCHHHHHHHHHhccC--CC-----------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--KN-----------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PNAVTTLSVLS 1219 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~d-----------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd~~T~~~LL~ 1219 (1991)
.|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|+++|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988764 21 223344578889999999999999999885421 15788999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|.++++.+++. .| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999873 45 57899999999999999999999999987755567899999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQ------------NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~------------~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+|...+++++++.|+ +...+..|+.+|...|+.+.+..+..
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999987 36678899999999999988877654
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=183.07 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=114.9
Q ss_pred hccccchhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 040435 1139 RCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQIS-------RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA 1211 (1991)
Q Consensus 1139 ~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~-------~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~ 1211 (1991)
.....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.
T Consensus 121 ~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 121 AQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 3445566799999999999999999999998764 489999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGL-VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDL 1269 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~-~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l 1269 (1991)
+||++||.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 999999999999997 5889999999965 59999999999999888887555544444
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=6e-12 Score=151.73 Aligned_cols=253 Identities=11% Similarity=-0.047 Sum_probs=178.2
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA 1160 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~ 1160 (1991)
+...+...|++++|+.+|+++.+.. ..+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 3334444444444444444443321 1123333333444444444444444444444432 2234455556666677777
Q ss_pred HHHHHHHHHhccC--C-CHhHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1161 IEASRKAFDQISR--K-NIVSWSAM--------------VA-AYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~--~-d~~s~n~L--------------I~-ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
+++|...|+++.+ | +...+..+ .. .+...|++++|++.++++.+.. +.+...+..+...+.
T Consensus 105 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 7777777766543 1 22222222 22 3677889999999999998754 346778888999999
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|.
T Consensus 184 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999998763 45 57889999999999999999999999987655567899999999999999999999
Q ss_pred HHHHHHHhcCCC------------CchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1302 GATSRILELEAQ------------NSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1302 ~~~e~llel~P~------------~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+++++++.|+ ++..+..++.+|...|++++|..+.+
T Consensus 261 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 261 KQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999 78899999999999999999988654
No 35
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.41 E-value=4.3e-12 Score=156.28 Aligned_cols=301 Identities=10% Similarity=0.012 Sum_probs=200.2
Q ss_pred HHHhcCCHHHHHH-HHHHHhcCCC-CC--CHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Q 040435 983 GLVVNEKYSEALS-LLYSMGKGVN-EV--DEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCH 1058 (1991)
Q Consensus 983 a~~~~g~~~eAl~-lf~~M~~~Gi-~P--d~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G 1058 (1991)
++...|++++|+. .|.+...... .| +...+..+-..+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556678888887 7776543211 11 23445566666677777777777777777654 335566667777777777
Q ss_pred CHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHH
Q 040435 1059 LVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGI 1135 (1991)
Q Consensus 1059 ~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~ 1135 (1991)
++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.......+ +.....
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~~------ 178 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAGG------ 178 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhhh------
Confidence 77777777776543 355667777777777777777777777776642 3222110000 000000
Q ss_pred HHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C---CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 040435 1136 AIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K---NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN 1210 (1991)
Q Consensus 1136 ~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~---d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd 1210 (1991)
..+ ......+...+ +.|++++|...|+++.+ | +...|..+...|.+.|++++|+..|+++.+.. +.+
T Consensus 179 -----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 179 -----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred -----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 000 00111222333 78899999999998764 3 47789999999999999999999999988753 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---------
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--------- 1280 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--------- 1280 (1991)
..++..+...+...|++++|.++++.+++ +.| +...+..+..+|.+.|++++|.+.++++....+.+
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 77888899999999999999999999876 355 47889999999999999999999999886532222
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1281 --ASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1281 --~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
..+|..|..++...|+.+.|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 78999999999999999999998876655
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=180.53 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=116.6
Q ss_pred HhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcC-------CCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 040435 734 KQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCI-------CRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPN 806 (1991)
Q Consensus 734 k~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~-------~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd 806 (1991)
+.....-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||
T Consensus 120 ~~~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hhHHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34455566899999999999999999999997763 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCh-HHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhc
Q 040435 807 NSILVLVIQACRCLGAY-YEGLQVHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEM 867 (1991)
Q Consensus 807 ~~ty~~lL~a~~~~g~~-~~a~~l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m 867 (1991)
.+||+++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+ +-++..++++..+
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999999999985 7899999999999999999999999987776 3444444444444
No 37
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.40 E-value=1.4e-09 Score=140.61 Aligned_cols=352 Identities=11% Similarity=-0.056 Sum_probs=290.6
Q ss_pred CCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCChhhHHHHHHHHHHhcCCC
Q 040435 971 QKNKVSWNSALSGLVV----NEKYSEALSLLYSMGKGVNEVDEITLVNILQICKC----FVHPMECKSVHCVILRRAFES 1042 (1991)
Q Consensus 971 ~~dv~s~n~LI~a~~~----~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~----~g~~~~a~~i~~~~~~~g~~~ 1042 (1991)
..+..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.++|...+..+.+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467777778888888 899999999999998764 45556666666666 889999999999998876
Q ss_pred chhhhhhHHHHHHh----cCCHHHHHHHHHhcCC-CchhhhhHHHHhhhh----cCChHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1043 NELVLNSLIDGYSK----CHLVELAWKLFNDVKK-PDVVLWSTMIAGFTL----CGRPREAIAVFQEMNQAQEKPNAITI 1113 (1991)
Q Consensus 1043 d~~v~naLI~~y~k----~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~----~g~~eeAl~lf~~M~~~Gv~Pd~~T~ 1113 (1991)
+...+..|-.+|.. .++.++|.+.|++..+ .+..++..|...|.. .++.++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677778888888 8899999999998765 466678888888877 789999999999998875 56666
Q ss_pred HHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHHH
Q 040435 1114 INLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMVA 1184 (1991)
Q Consensus 1114 ~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ 1184 (1991)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..|..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666667766 789999999999998876 45677788888887 8899999999998765 46677888888
Q ss_pred HHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1185 AYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHG-----GLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1185 ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~-----G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.|.. .++.++|+++|++..+.| +...+..+...+... ++.++|.++++...+. -+...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8888 899999999999998765 455666777777776 8999999999998753 24567888888
Q ss_pred HHHHcC---CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh-
Q 040435 1256 MLARAG---ELDIAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA- 1327 (1991)
Q Consensus 1256 ~l~r~G---~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~- 1327 (1991)
+|.+.| ++++|.+++++..+. .++..+..|...+.. .++.++|...++++.+.+ ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 888877 889999999998763 578899999999998 899999999999998864 68889999999998
Q ss_pred ---CCCchhHHHHHHHHHHcC
Q 040435 1328 ---GGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1328 ---~G~~~ea~~vr~~m~~~g 1345 (1991)
.++.++|......-.+.|
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC
Confidence 899999998777655554
No 38
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.39 E-value=1e-11 Score=153.38 Aligned_cols=230 Identities=14% Similarity=0.041 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHH
Q 040435 1110 AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAY 1186 (1991)
Q Consensus 1110 ~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay 1186 (1991)
...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3446777788899999999999999999875 44678899999999999999999999998864 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNA-----------VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~-----------~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|++++|+..|+++.+. .|+. ..+..+...+...|++++|.++++++++...-.++...+..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999873 3432 22334567888999999999999999875322225889999999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|.+.++++.+..+.+..+|..+..++...|++++|+..+++++++.|+++..+..++.+|...|++++|.
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999887556689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040435 1336 GTRLLAK 1342 (1991)
Q Consensus 1336 ~vr~~m~ 1342 (1991)
...+...
T Consensus 302 ~~~~~al 308 (365)
T 4eqf_A 302 SNFLTAL 308 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776543
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.38 E-value=1.4e-11 Score=148.20 Aligned_cols=192 Identities=13% Similarity=0.037 Sum_probs=160.5
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS 1216 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~ 1216 (1991)
+++......+...|.+.|+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ ..+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 34555667788888999999999999998742 4 456777788999999999999999987 467788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPALEH---YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~---y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
+...+.+.|+.++|.+.++.+.+. .|+... ..+++..+...|++++|..+++++.+..+.+..+|..+..++..
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999874 566321 22344555556999999999999988677889999999999999
Q ss_pred cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhH-HHHHHHHH
Q 040435 1294 YGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVES-SGTRLLAK 1342 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea-~~vr~~m~ 1342 (1991)
.|++++|+..++++++++|+++.++..++.++...|+++++ ....+.+.
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999874 45654443
No 40
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=9.1e-11 Score=150.09 Aligned_cols=381 Identities=8% Similarity=-0.094 Sum_probs=186.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcCChHHHHHHhccCCC--------
Q 040435 908 GQSLVSVLKACTNLRDLTMGRMVHGLVIYR-----G--LGC-DLFVGNSLIDMYAKCKDTDSAFKVFSEMPQ-------- 971 (1991)
Q Consensus 908 ~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~-----g--~~p-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------- 971 (1991)
...|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+..+|...|++++|...|++..+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345777777777778888888777766542 1 122 345677777777778887777776655421
Q ss_pred ---CCHhHHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCCCHH-HHHHHHH---HHhccCChhhHHHHHHHHHHhcCCC
Q 040435 972 ---KNKVSWNSALSGLVVN--EKYSEALSLLYSMGKGVNEVDEI-TLVNILQ---ICKCFVHPMECKSVHCVILRRAFES 1042 (1991)
Q Consensus 972 ---~dv~s~n~LI~a~~~~--g~~~eAl~lf~~M~~~Gi~Pd~~-T~~~lL~---a~~~~g~~~~a~~i~~~~~~~g~~~ 1042 (1991)
....+++.+..++... +++++|+..|++... +.|+.. .+..+.. .....++.+.+.+.+..+++... .
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~--~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE--KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 1234455444444443 457777777777655 344432 2222222 23345666667777766666542 2
Q ss_pred chhhhhhHHHHHH----hcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 040435 1043 NELVLNSLIDGYS----KCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAI-TII 1114 (1991)
Q Consensus 1043 d~~v~naLI~~y~----k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~-T~~ 1114 (1991)
+..++..+...+. ..|+.++|.+.+++..+ .+...|+.+...|.+.|++++|+..|.+..+. .|+.. ++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 3344444433333 34556677777766542 34556677777777777777777777776653 34332 222
Q ss_pred HHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC
Q 040435 1115 NLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1115 ~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+-..+...+... .. .....+.......+..+.|...|+...+ .+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MN-------LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHH---------HH-------C------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh---------hh-------HHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 2222221110000 00 0000001111112234556666665542 344567777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAV--TTLSVLS-ACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAID 1268 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~--T~~~LL~-ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~ 1268 (1991)
+++|++.|++..+....|... .+..+.. ...+.|+.++|++.|.+.++ +.|+.....- ..+.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHHH
Confidence 777777777776643222211 1111111 23456777777777776654 5555322211 1223333
Q ss_pred HHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1269 LINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1269 l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
++++.....+.++.+|..|...+...|+.++|...++++++++|.+|.+..-+
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 44433332344566777777777777777777777777777777666654433
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.33 E-value=1.9e-11 Score=147.23 Aligned_cols=271 Identities=13% Similarity=0.050 Sum_probs=166.7
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCC
Q 040435 1014 NILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGR 1090 (1991)
Q Consensus 1014 ~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~ 1090 (1991)
.....+...|++++|..++..+++.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+...|...|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCC
Confidence 33344444555555555555554433 12334444455555555555555555554432 233444445555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHhhccChHHHHHHHHHHHHhccccchhHHHHH-HH-HHHhcCCHHHHHHH
Q 040435 1091 PREAIAVFQEMNQAQEKPNAITIINLL-EACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV-VD-MYAKCGAIEASRKA 1167 (1991)
Q Consensus 1091 ~eeAl~lf~~M~~~Gv~Pd~~T~~~lL-~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL-I~-~y~k~G~~e~A~~l 1167 (1991)
+++|++.|+++.+. .|+.......+ ..+ ++......+ .. .|...|++++|...
T Consensus 105 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~ 160 (327)
T 3cv0_A 105 ANAALASLRAWLLS--QPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECRTL 160 (327)
T ss_dssp HHHHHHHHHHHHHT--STTTTTC------------------------------------------CCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHHHH
Confidence 55555555554442 12111110000 000 000000011 12 26667788888888
Q ss_pred HHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCC
Q 040435 1168 FDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVE 1244 (1991)
Q Consensus 1168 f~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~ 1244 (1991)
|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+..++..+...+...|++++|.++++++.+. .
T Consensus 161 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~ 236 (327)
T 3cv0_A 161 LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI---N 236 (327)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---C
Confidence 887753 356788888888888999999999998887643 335677888888888899999999999888763 4
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC------------CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1245 P-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA------------TASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1245 P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p------------d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
| +...+..+..+|.+.|++++|.+.++++....+. +..+|..+..++...|+.+.|..+++++++..
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 4 4678888888999999999999998887653222 46788888889999999999998888777655
Q ss_pred CC
Q 040435 1312 AQ 1313 (1991)
Q Consensus 1312 P~ 1313 (1991)
|+
T Consensus 317 ~~ 318 (327)
T 3cv0_A 317 AK 318 (327)
T ss_dssp HH
T ss_pred ch
Confidence 43
No 42
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=4.1e-10 Score=144.02 Aligned_cols=358 Identities=11% Similarity=0.009 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHhccCC------------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH
Q 040435 943 LFVGNSLIDMYAKCKDTDSAFKVFSEMP------------QKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEI 1010 (1991)
Q Consensus 943 ~~v~naLI~~y~k~G~~e~A~~lf~~m~------------~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~ 1010 (1991)
...||.|-..|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~------ 124 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC------ 124 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------
Confidence 4567777777777777777777665431 1234566666666666666666666666543200
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhc--CCHHHHHHHHHhcCC--Cc-hhhhhHHHHh-
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKC--HLVELAWKLFNDVKK--PD-VVLWSTMIAG- 1084 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~--G~l~~A~~lf~~m~~--~d-~~syn~LI~~- 1084 (1991)
...... .......+++.+..++.+. +++++|...|++..+ |+ ...+..+...
T Consensus 125 ------~~~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~ 182 (472)
T 4g1t_A 125 ------EKFSSP----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIAS 182 (472)
T ss_dssp ------HHSCCS----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred ------Hhcccc----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 000000 0001122333333334333 356777777776553 33 3334333333
Q ss_pred --hhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1085 --FTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1085 --y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
+...++.++|++.|++..+. .|+ ...+..+...+.. .++.+.|.+.+..+.+.. +.+..++..+...|.+
T Consensus 183 ~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 183 YRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 33456667777777776653 343 3334333333332 356667777777766654 3345667778888888
Q ss_pred cCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 040435 1158 CGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMN-------------------GLAHEALALVAEMKLGGLQPNAVTTL 1215 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~-------------------G~~~eAl~lf~eM~~~Gi~Pd~~T~~ 1215 (1991)
.|++++|...|++..+ | +..+|..+...|... +..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 8888888888887654 3 445666665555322 23677888888877643 23345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHH----HHHHHHH-HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDHGVEPALE----HYSCMVD-MLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~----~y~~Li~-~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
.+...+...|++++|.++|++.++ +.|+.. .+..+.. .+...|+.++|++.+++..+ +.|+...+...
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-i~~~~~~~~~~--- 411 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-INQKSREKEKM--- 411 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-SCCCCHHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCcccHHHHHH---
Confidence 788889999999999999998876 455432 2333333 23467899999999998876 45554433332
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
...++.++++.++.+|+++.+|..|+.+|...|++++|....+.--+.|
T Consensus 412 ------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 412 ------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp ------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred ------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3455677888999999999999999999999999999998766443333
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.30 E-value=1.1e-10 Score=135.24 Aligned_cols=221 Identities=12% Similarity=0.004 Sum_probs=108.9
Q ss_pred hhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccc------hhHHHH
Q 040435 1077 LWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEE------VAVGTA 1150 (1991)
Q Consensus 1077 syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d------~~v~na 1150 (1991)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+++...... ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45555556666666666666666665544 4444444444444555555555544444443321110 344444
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC--CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR--KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLV 1227 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~--~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~ 1227 (1991)
+...|.+.|++++|...|+++.+ |+ ...+...|++++|+..++++... .| +...+..+...+...|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence 55555555555555555554433 22 12233444555555555555442 22 223344444445555555
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
++|.+.++.+++. .| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.+.|...+++
T Consensus 156 ~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 156 PNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5555555555442 22 3444555555555555555555555554443333445555555555555555555555555
Q ss_pred HHhcC
Q 040435 1307 ILELE 1311 (1991)
Q Consensus 1307 llel~ 1311 (1991)
++++.
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55555
No 44
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.27 E-value=2.9e-10 Score=131.74 Aligned_cols=217 Identities=11% Similarity=-0.006 Sum_probs=191.1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C-------HhHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-N-------IVSWS 1180 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d-------~~s~n 1180 (1991)
..+..+-..+...|+++.|...+..+++.. .+..++..+...|.+.|++++|...|++..+ | + ...|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 355666777889999999999999999988 7888999999999999999999999998764 2 1 57899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR 1259 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r 1259 (1991)
.+...|...|++++|++.|+++.+ +.|+. ..+...|++++|.+.++.+.+ ..| +...+..+...+.+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHH
Confidence 999999999999999999999987 34664 345667889999999999876 455 46788899999999
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.|++++|.+.++++.+..+.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|....+
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999775566789999999999999999999999999999999999999999999999999999998665
Q ss_pred HH
Q 040435 1340 LA 1341 (1991)
Q Consensus 1340 ~m 1341 (1991)
..
T Consensus 232 ~a 233 (258)
T 3uq3_A 232 AA 233 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 45
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.25 E-value=1.4e-10 Score=132.76 Aligned_cols=193 Identities=16% Similarity=0.029 Sum_probs=160.3
Q ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1142 AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1142 ~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 34566777888899999999999999998765 367889999999999999999999999998743 23566788888
Q ss_pred HHHHhc-----------CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHH
Q 040435 1219 SACSHG-----------GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGA 1286 (1991)
Q Consensus 1219 ~ac~~~-----------G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~ 1286 (1991)
.++... |++++|...+++.++ +.|+ ...+..+..+|.+.|++++|.+.++++.+.. .+...|..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 888899 999999999999987 5774 7889999999999999999999999987744 78999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
+..++...|+.++|...++++++++|+++..+..++.+|...|++++|....+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999877654
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.18 E-value=1.6e-09 Score=122.59 Aligned_cols=198 Identities=11% Similarity=0.017 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344556666777777777777777776553 345677777777777777777777777776643 2355666677777
Q ss_pred HHhc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1221 CSHG-GLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1221 c~~~-G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
+... |++++|.++++.+.+ .+..|+ ...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777765 233343 4567777777777777777777777766544445677777777777777777
Q ss_pred HHHHHHHHHHhcCC-CCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1299 LGAGATSRILELEA-QNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1299 ~A~~~~e~llel~P-~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.|...++++++..| .++..+..++.+|...|+.+++....+.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 77777777777777 7777777777777777777777776665543
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.18 E-value=3.5e-10 Score=132.86 Aligned_cols=243 Identities=9% Similarity=-0.033 Sum_probs=181.3
Q ss_pred hhhcCChHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEK--P-NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAI 1161 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~--P-d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~ 1161 (1991)
+...|++++|+..|+++.+.... | +..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34456667777777776654221 1 23455556666667777777777777666654 23566778888899999999
Q ss_pred HHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1162 EASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1162 e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|++++|..+++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998764 36788999999999999999999999999874 5665555556666678899999999998887
Q ss_pred HhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1239 QDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA-----TASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1239 ~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p-----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.. ..++...+. ++..+...++.++|.+.++++... .| +..+|..+...+...|+.+.|...++++++++|+
T Consensus 172 ~~--~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EK--SDKEQWGWN-IVEFYLGNISEQTLMERLKADATD-NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HH--SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hc--CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc-cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 64 333444443 777788888999999999988653 22 2578999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHhCCCchhHHHH
Q 040435 1314 NSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1314 ~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
+...+ +.++...|++++|...
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDD 268 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC---
T ss_pred hHHHH---HHHHHHHHHHHhhHHH
Confidence 75544 5677778888776543
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=3.3e-09 Score=123.06 Aligned_cols=207 Identities=10% Similarity=0.024 Sum_probs=149.0
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...|..+...|...|++++|++.|+++.+.. | .+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4556666666777777777777776665431 1 123344556666
Q ss_pred HHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A 1230 (1991)
|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 6777777777777776543 356677778888888888888888888887643445 345666777778888888888
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1231 LSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
.++++.+.+. .| +...+..+..+|.+.|++++|.+.++++.+..+.+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888887663 34 4677888888888888888888888887765556777888888888888888888888888888
Q ss_pred cCCCCchHHHH
Q 040435 1310 LEAQNSAGYLL 1320 (1991)
Q Consensus 1310 l~P~~~~~yvl 1320 (1991)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 88887765443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.16 E-value=1.5e-09 Score=125.91 Aligned_cols=198 Identities=10% Similarity=-0.077 Sum_probs=174.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56677888899999999999999998764 467889999999999999999999999998754 33677888888999
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...|++++|.++++.+.+ .+..| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999865 33556 4678889999999999999999999998765556789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
...++++++..|.++..+..++.+|...|++++|....+.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887766544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.14 E-value=7.2e-10 Score=127.49 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=138.7
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
....|..+...+.+.|++++|+..|+++.+. .|+ +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHH
Confidence 3445666666666677777777777666542 121 2233444555
Q ss_pred HHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEG 1230 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A 1230 (1991)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 66666777777777766543 356677777788888888888888888877643 33566677777778888888888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1231 LSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1231 ~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.++++.+.+. ...+...+..+..++.+.|++++|.+.++++....+.+..+|..+..++...|+.+.|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887663 22256778888888888888888888888876644556778888888888888888888888888888
Q ss_pred CCCCchHHHHHHHHHHhC
Q 040435 1311 EAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~ 1328 (1991)
+|+++..+..++.+....
T Consensus 223 ~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp CTTCHHHHHHHTC-----
T ss_pred CcchHHHHHHHHHHHhhc
Confidence 888888777766555443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.13 E-value=5.2e-09 Score=118.39 Aligned_cols=209 Identities=10% Similarity=0.044 Sum_probs=164.6
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...|...|++++|++.|+++.+.. | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34456666666666777777777766665431 2 12335566677
Q ss_pred HHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMN-GLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~-G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e 1228 (1991)
.|...|++++|...|+++.+ .+...|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 77788888888888887653 3667888899999999 999999999999987433444 567788888899999999
Q ss_pred HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1229 EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLK-ATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
+|.++++.+.+. .| +...+..+..++.+.|++++|.+.++++.+..+ .+...|..+...+...|+.+.|...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999998763 45 478899999999999999999999999876445 6788888888888999999999999999
Q ss_pred HHhcCCCCchHHHHH
Q 040435 1307 ILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1307 llel~P~~~~~yvlL 1321 (1991)
+.+..|+++.....+
T Consensus 208 ~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 208 LQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHCTTCHHHHHHH
T ss_pred HHHhCCCCHHHHHHh
Confidence 999999998876655
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.12 E-value=1.2e-09 Score=125.49 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=157.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA 1220 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a 1220 (1991)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666777888899999999999998864 367889999999999999999999999998753 3467788888899
Q ss_pred HHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
+...|++++|.++++.+.+. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999774 2235788999999999999999999999998775566789999999999999999999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
...++++++..|+++..+..++.+|...|++++|....+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999987765543
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=1e-09 Score=128.96 Aligned_cols=245 Identities=10% Similarity=-0.019 Sum_probs=158.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCC---CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcc
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKK---PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVAT 1124 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~---~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g 1124 (1991)
..+...|.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++..+.+-.|+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------- 72 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA-------------- 72 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC--------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH--------------
Confidence 3444555666666666666665542 23335556666666666666666666665542211111
Q ss_pred ChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1125 ELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAE 1201 (1991)
Q Consensus 1125 ~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~e 1201 (1991)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++
T Consensus 73 -------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 133 (272)
T 3u4t_A 73 -------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133 (272)
T ss_dssp -------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGG
T ss_pred -------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 112345566677777777777777776653 3456777888888888888888888887
Q ss_pred HHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHCccC
Q 040435 1202 MKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE---LDIAIDLINQMPDN 1276 (1991)
Q Consensus 1202 M~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~ 1276 (1991)
..+. .| +...+..+...+...+++++|.+.|+.+++ +.|+ ...+..+..++...|+ +++|...++++.+.
T Consensus 134 al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 134 QIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp GCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred Hhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 7654 34 344455554245555688888888888876 4554 6677777777877777 66677777666431
Q ss_pred --CCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1277 --LKAT------ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1277 --~~pd------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
..|+ ..+|..|...+...|+.+.|...++++++++|+++.+.-.+..+....+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 1122 25788889999999999999999999999999999888877776655543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.06 E-value=4e-09 Score=131.49 Aligned_cols=246 Identities=9% Similarity=0.004 Sum_probs=193.2
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhccC-hHHHHHHHHHHHHhccccchhHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPN-AITIINLLEACSVATE-LSSSKWAHGIAIRRCLAEEVAVGTAVV 1152 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd-~~T~~~lL~a~a~~g~-le~a~~i~~~~~k~g~~~d~~v~naLI 1152 (1991)
...|+.+...+.+.|++++|++.|++..+. .|+ ...|..+-.++...|+ ++.|...+..+++.. +.+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666667777777777777777777663 443 4455666666677775 777777777777765 33566788888
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHH
Q 040435 1153 DMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH-GGLVE 1228 (1991)
Q Consensus 1153 ~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~-~G~~e 1228 (1991)
..|.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 889999999999999998864 477899999999999999999999999999853 2356778888888888 66657
Q ss_pred HH-----HHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-----
Q 040435 1229 EG-----LSFFNSMVQDHGVEPA-LEHYSCMVDMLARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYG----- 1295 (1991)
Q Consensus 1229 ~A-----~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g----- 1295 (1991)
+| ++.+++.++ +.|+ ...|..+..+|.+.| ++++|.++++++ +..+.+..++..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 588888876 6774 678888899999988 689999999988 445667889999999998874
Q ss_pred ---C-hhHHHHHHHHH-HhcCCCCchHHHHHHHHHHhC
Q 040435 1296 ---N-TELGAGATSRI-LELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1296 ---~-~e~A~~~~e~l-lel~P~~~~~yvlL~~lya~~ 1328 (1991)
+ .++|..+++++ .+++|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 999999999898887766543
No 55
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.05 E-value=8.3e-07 Score=117.86 Aligned_cols=448 Identities=9% Similarity=-0.009 Sum_probs=259.6
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhC
Q 040435 829 VHGYIIRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCE---RDVISWSVMIGGYVQSAE---AFSGLRLFRQMVSG 901 (1991)
Q Consensus 829 l~~~~~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~---~d~~syn~LI~a~~~~G~---~~eAl~lf~~M~~~ 901 (1991)
.++..+... ..|...|..++..+.+ +.++.|+.+|+++.. .....|...+..-.+.|. .+.+..+|++....
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444444 3477788888887776 778888888887732 355677777777777777 88888888887764
Q ss_pred CCCCCCHHHHHHHHHHHHccCCh--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHh---------cCChHH
Q 040435 902 FKNEPDGQSLVSVLKACTNLRDL--------TMGRMVHGLVIY-RGL-GCD-LFVGNSLIDMYAK---------CKDTDS 961 (1991)
Q Consensus 902 ~gv~Pd~~T~~~lL~a~~~~g~~--------~~a~~l~~~m~k-~g~-~pd-~~v~naLI~~y~k---------~G~~e~ 961 (1991)
....|+...|..-+.-..+.++. +..+++|+.++. .|. .++ ..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 11236776666666655544443 223355555443 244 443 3456655554332 123344
Q ss_pred HHHHhccCCC-C--CH-hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHH
Q 040435 962 AFKVFSEMPQ-K--NK-VSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILR 1037 (1991)
Q Consensus 962 A~~lf~~m~~-~--dv-~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~ 1037 (1991)
++++|++... | +. ..|..... +.+.-+...+..++.+. ..+++.|+..+..+..
T Consensus 213 ~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~ 270 (679)
T 4e6h_A 213 IRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNARSLYQDWLN 270 (679)
T ss_dssp HHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHHHHHHHHHHH
Confidence 4444444332 1 00 11111000 00000000000000000 0011122222222111
Q ss_pred h--cCCCc----hhhhhhHHHHHHhcC-CHHHHHHHHHhcCCCchhhhhHHHHhhhhcC-------ChHHHHHHHHHHHH
Q 040435 1038 R--AFESN----ELVLNSLIDGYSKCH-LVELAWKLFNDVKKPDVVLWSTMIAGFTLCG-------RPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1038 ~--g~~~d----~~v~naLI~~y~k~G-~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g-------~~eeAl~lf~~M~~ 1103 (1991)
. ++... ....+ +...-..+ .... -+..|...|.---.++ ..+.+..+|++...
T Consensus 271 ~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~-----------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 271 ITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ-----------QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp HTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH-----------HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHhhccccccccch--hccCCCCchhHHH-----------HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 0 11000 00000 00000000 0000 0123444443222222 12345566777665
Q ss_pred CCCCCCHHHHHHHHHHHhhccChHHHH-HHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---------
Q 040435 1104 AQEKPNAITIINLLEACSVATELSSSK-WAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--------- 1173 (1991)
Q Consensus 1104 ~Gv~Pd~~T~~~lL~a~a~~g~le~a~-~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--------- 1173 (1991)
. +.-+...|.....-+...|+.+.|. .+++.+++.. +.+..++-.++..+-+.|+++.|..+|+.+..
T Consensus 338 ~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 H-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp H-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 2234555655566666778888886 9999988643 45667778888999999999999999998764
Q ss_pred ----CC------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 040435 1174 ----KN------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAVTTLSVLSACSH-GGLVEEGLSFFN 1235 (1991)
Q Consensus 1174 ----~d------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~T~~~LL~ac~~-~G~~e~A~~i~~ 1235 (1991)
|+ ...|-..+....+.|..+.|..+|.+..+. +. +....|......-.+ .++.+.|.++|+
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236888888888899999999999999876 31 122333322222223 356999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
..++.++ -+...+...++.+.+.|+.+.|..+|++.....++ ....|...+.--..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9988633 34566778889999999999999999998875442 457999999999999999999999999999999
Q ss_pred CCchH
Q 040435 1313 QNSAG 1317 (1991)
Q Consensus 1313 ~~~~~ 1317 (1991)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 87653
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=4.5e-08 Score=115.44 Aligned_cols=226 Identities=8% Similarity=-0.069 Sum_probs=147.1
Q ss_pred hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh----ccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1076 VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSV----ATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1076 ~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~----~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
.++..+...|...|++++|+..|++..+. -+...+..+-..+.. .++.++|...+..+.+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444555555556666666666555542 122333344444444 555555555555555544 44455566
Q ss_pred HHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1152 VDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1152 I~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
..+|.. .+++++|...|++..+ .+..++..+...|.. .|+.++|++.|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 666666 7777777777776654 356677777777777 778888888888877755 4555666666666
Q ss_pred h----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH-
Q 040435 1223 H----GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS- 1293 (1991)
Q Consensus 1223 ~----~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~- 1293 (1991)
. .++.++|.++|+...+. .+...+..+..+|.+ .+++++|.+.+++..+. .+...+..|...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcC
Confidence 6 77888888888777652 245667777777777 78888888888777653 235677777777777
Q ss_pred ---cCChhHHHHHHHHHHhcCCCCch
Q 040435 1294 ---YGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1294 ---~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.++.++|...++++++++|+++.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 77888888888888888775443
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.03 E-value=1.8e-08 Score=118.07 Aligned_cols=244 Identities=11% Similarity=-0.007 Sum_probs=187.7
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cchh----hhhHHHHh
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK--PDVV----LWSTMIAG 1084 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d~~----syn~LI~~ 1084 (1991)
.+...-..+...|+++.|...+..+++... .+..++..+...|.+.|++++|...|++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344555677889999999999999988653 3555888899999999999999999998765 2222 37888899
Q ss_pred hhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS 1164 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A 1164 (1991)
|...|++++|++.|++..+. .| .+..++..+...|.+.|++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~--~~----------------------------------~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDR--DT----------------------------------TRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--ST----------------------------------TCTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhc--Cc----------------------------------ccHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999988762 11 2334567788889999999999
Q ss_pred HHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHh
Q 040435 1165 RKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGL---VEEGLSFFNSM 1237 (1991)
Q Consensus 1165 ~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~---~e~A~~i~~~M 1237 (1991)
...|++..+ .+...|..+...+...+++++|++.|+++.+. .|+ ...+..+..++...|. .++|...++.+
T Consensus 128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 999998875 35677777773444556999999999999874 444 6677777778888887 88899999888
Q ss_pred HHhcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1238 VQDHGVEPA------LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1238 ~~~~gi~P~------~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
.+...-.|+ ...|..+...|.+.|++++|.+.++++.+..+.+..++..+......
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 775433454 25788899999999999999999999987555577777666555443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=4.3e-09 Score=131.77 Aligned_cols=260 Identities=8% Similarity=-0.027 Sum_probs=150.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHhcCC--Cc-h----hhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 040435 1049 SLIDGYSKCHLVELAWKLFNDVKK--PD-V----VLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACS 1121 (1991)
Q Consensus 1049 aLI~~y~k~G~l~~A~~lf~~m~~--~d-~----~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a 1121 (1991)
.+...+...|++++|...|++..+ |+ . ..|..+...|...|++++|+..|++..+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------- 116 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA---------------- 116 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----------------
Confidence 444555566666666666665542 22 1 245555555666666666666665543310
Q ss_pred hccChHHHHHHHHHHHHhc-cccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CCHhHHHHHHHHHHHcCC
Q 040435 1122 VATELSSSKWAHGIAIRRC-LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---------KNIVSWSAMVAAYGMNGL 1191 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g-~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---------~d~~s~n~LI~ay~~~G~ 1191 (1991)
.+.+ ......++..+...|...|++++|...|++..+ ....+|..+...|...|+
T Consensus 117 ---------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 117 ---------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp ---------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 0000 112234455556666666666666666665432 123456666666777777
Q ss_pred -----------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---
Q 040435 1192 -----------------AHEALALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--- 1246 (1991)
Q Consensus 1192 -----------------~~eAl~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--- 1246 (1991)
+++|++.+++..+. +-.+ ...++..+...+...|++++|.+++++..+...-.++
T Consensus 182 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 182 HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 77777766665431 1111 1235556666677777777777777766542111112
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----
Q 040435 1247 -LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK---ATASAWGALLSACRSYGNTELGAGATSRILELEAQN----- 1314 (1991)
Q Consensus 1247 -~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~----- 1314 (1991)
...+..+..+|.+.|++++|.+.++++... .. ....+|..+...+...|+.+.|...+++++++.+..
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 235667777777777777777777765431 10 114567777777777788888888777777764432
Q ss_pred -chHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1315 -SAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1315 -~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...+..++.+|...|++++|....+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3367777788888888877776544
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.02 E-value=8.6e-09 Score=128.06 Aligned_cols=95 Identities=11% Similarity=0.017 Sum_probs=52.2
Q ss_pred chhhhhhHHHHHHhcCCHHHHHHHHHhcCC--Cc-----hhhhhHHHHhhhhcCChHHHHHHHHHHHHC----CCCCC-H
Q 040435 1043 NELVLNSLIDGYSKCHLVELAWKLFNDVKK--PD-----VVLWSTMIAGFTLCGRPREAIAVFQEMNQA----QEKPN-A 1110 (1991)
Q Consensus 1043 d~~v~naLI~~y~k~G~l~~A~~lf~~m~~--~d-----~~syn~LI~~y~~~g~~eeAl~lf~~M~~~----Gv~Pd-~ 1110 (1991)
....+..+...+.+.|++++|...|++..+ |+ ...|..+...|...|++++|+..|++.... +-.|. .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566667777777777777776543 22 245666677777777777777777765432 11111 1
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAI 1137 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~ 1137 (1991)
.++..+-..+...|+++.|...+..+.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 223333344444455555544444443
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.01 E-value=6.3e-09 Score=124.88 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCC--------------------HHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGL--------------------AHEA 1195 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~--------------------~~eA 1195 (1991)
..++..+...|...|++++|...|++..+ ++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566677778888888888888776543 22 3367777788888888 8888
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHH
Q 040435 1196 LALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1196 l~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA 1266 (1991)
++.+++.... +-.| ...++..+...+...|++++|.++++...+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776532 1111 1235666777788889999999888887653211122 33778888889999999999
Q ss_pred HHHHHHCccCC--CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHHHHHhCCCchhH
Q 040435 1267 IDLINQMPDNL--KAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1267 ~~l~~~m~~~~--~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~lya~~G~~~ea 1334 (1991)
.+.+++..... ..+ ..++..+...+...|+.+.|...+++++++.+.. ...+..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99888765421 111 5677888888899999999999999988875543 34677889999999999998
Q ss_pred HHHHHHH
Q 040435 1335 SGTRLLA 1341 (1991)
Q Consensus 1335 ~~vr~~m 1341 (1991)
.......
T Consensus 323 ~~~~~~a 329 (338)
T 3ro2_A 323 MHFAEKH 329 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.01 E-value=2.5e-09 Score=132.99 Aligned_cols=296 Identities=12% Similarity=0.006 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------Cc
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PD 1074 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d 1074 (1991)
.....+...-..+...|++++|...+..+++...... ..++..+...|...|++++|...|++..+ ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445556666778889999999999999998753321 35788889999999999999999987642 12
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE-KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv-~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
..+|..+...|...|++++|+..+.+..+..- .++.. ....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc-------------------------------chHHHHHHHHH
Confidence 45788888999999999999999998765210 00100 01223344445
Q ss_pred HHHhcCC--------------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040435 1154 MYAKCGA--------------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKL 1204 (1991)
Q Consensus 1154 ~y~k~G~--------------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~ 1204 (1991)
.|...|+ +++|...|++..+ . ...+|..+...|...|++++|+..+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555555 5555555554331 1 234677788888888888888888888764
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1205 GGL-QPN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1205 ~Gi-~Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
... .++ ..++..+...+...|++++|.++++...+...-.++ ...+..+..+|.+.|++++|.+.++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 122 236777778888999999999998887653211122 45778889999999999999999988754
Q ss_pred C--CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC------CCchHHHHHHHHHHhCCCchh
Q 040435 1276 N--LKAT----ASAWGALLSACRSYGNTELGAGATSRILELEA------QNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1276 ~--~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P------~~~~~yvlL~~lya~~G~~~e 1333 (1991)
. ...+ ..+|..+...+...|+.+.|...+++++++.+ ....++..++.+|...|+...
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 1 0112 56888889999999999999999999988743 335667888999988887643
No 62
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.99 E-value=5.1e-09 Score=122.78 Aligned_cols=217 Identities=11% Similarity=-0.038 Sum_probs=179.5
Q ss_pred hccChHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCL---AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEA 1195 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~---~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eA 1195 (1991)
..++++.|...+..+++... +.+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999988642 23567888999999999999999999998864 4678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1196 LALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1196 l~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
+..|+++.+.. +.+...+..+...+...|++++|.++++.+.+ +.|+......+...+.+.|++++|...++++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998853 33577888899999999999999999999976 567655555566666788999999999987766
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC----chHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN----SAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~----~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
..+++...|. ++..+...++.+.|...++++++..|.. +..+..++.+|...|++++|....+...+
T Consensus 173 ~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 173 KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555554 6777778888899999999999887743 67889999999999999999988775543
No 63
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.98 E-value=1.4e-07 Score=111.26 Aligned_cols=223 Identities=10% Similarity=-0.011 Sum_probs=191.1
Q ss_pred CHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh----cCCHHHHHHHHHhccC-CCHhHHHHHH
Q 040435 1109 NAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK----CGAIEASRKAFDQISR-KNIVSWSAMV 1183 (1991)
Q Consensus 1109 d~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k----~G~~e~A~~lf~~m~~-~d~~s~n~LI 1183 (1991)
+..++..+-..+...+++++|...+..+.+.+ +...+..+..+|.. .|++++|...|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34455566667788899999999999998843 55677888999999 9999999999998765 4778899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1184 AAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH----GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1184 ~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~----~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
..|.. .++.++|++.|++..+.+ +...+..+...+.. .|+.++|.++|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67788888888888 99999999999998763 2 5677888899
Q ss_pred HHHH----cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1256 MLAR----AGELDIAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1256 ~l~r----~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+|.+ .+++++|.+.+++..+. .+...+..|...+.. .++.++|...++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYN 230 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHT
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHc
Confidence 9998 99999999999998763 467889999999999 9999999999999999976 7789999999999
Q ss_pred ----CCCchhHHHHHHHHHHcC
Q 040435 1328 ----GGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1328 ----~G~~~ea~~vr~~m~~~g 1345 (1991)
.|++++|....+...+.|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC
Confidence 999999998776554443
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.98 E-value=2.6e-08 Score=109.88 Aligned_cols=165 Identities=14% Similarity=0.123 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
..+|..|...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|+..+++..... +-+...+..+...+
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSAN 83 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHH
Confidence 34444555555555555555555554432 234444445555555555555555554444321 11233333333444
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...++++.|.+.+....+ +.| +...+..+..+|.+.|++++|++.+++..+..+.+..+|..+..++...|+.++|
T Consensus 84 ~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 444445555544444433 222 2344444444444444444444444444332233444444444444444444444
Q ss_pred HHHHHHHHhcCCC
Q 040435 1301 AGATSRILELEAQ 1313 (1991)
Q Consensus 1301 ~~~~e~llel~P~ 1313 (1991)
...++++++++|+
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 4444444444443
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.97 E-value=1.4e-08 Score=112.15 Aligned_cols=163 Identities=16% Similarity=0.089 Sum_probs=144.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCM 1253 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~L 1253 (1991)
+...|..|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.+...... .| +...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 56789999999999999999999999998753 235667888889999999999999999998763 44 46778888
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
...+.+.+++++|.+.+++.....+.+..+|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999999998775566789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 040435 1334 SSGTRLLA 1341 (1991)
Q Consensus 1334 a~~vr~~m 1341 (1991)
|....+..
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.96 E-value=6e-09 Score=134.08 Aligned_cols=190 Identities=7% Similarity=-0.059 Sum_probs=167.7
Q ss_pred cchhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040435 1143 EEVAVGTAVVDMYAKCGAI-EASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL 1218 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~-e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL 1218 (1991)
.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3556677777888888999 999999987754 35789999999999999999999999999974 58888888888
Q ss_pred HHHHhc---------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc--------CCHHHHHHHHHHCccCCC--
Q 040435 1219 SACSHG---------GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA--------GELDIAIDLINQMPDNLK-- 1278 (1991)
Q Consensus 1219 ~ac~~~---------G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~--------G~~eeA~~l~~~m~~~~~-- 1278 (1991)
.++... |++++|.+.+++.++ +.| +...|..+..+|.+. |++++|.+.++++.+..+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 889998 999999999999987 466 478899999999999 999999999999876434
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1279 -ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1279 -pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.+..+|..+..++...|++++|...++++++++|+++.++..++.++...|++++|...
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999998763
No 67
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.94 E-value=4.4e-08 Score=125.19 Aligned_cols=352 Identities=11% Similarity=0.023 Sum_probs=196.5
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHhccCCCCCHhHHHHHHHHHHhcC-----C
Q 040435 918 CTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDT---DSAFKVFSEMPQKNKVSWNSALSGLVVNE-----K 989 (1991)
Q Consensus 918 ~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~---e~A~~lf~~m~~~dv~s~n~LI~a~~~~g-----~ 989 (1991)
+.+.|++++|.+++....+.| +...+..|-.+|...|+. ++|...|++..+.+...+..|...+...+ +
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcC
Confidence 344555666666666665554 222333445555566666 78888888776666666666666555554 6
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCh---hhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC----CHHH
Q 040435 990 YSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHP---MECKSVHCVILRRAFESNELVLNSLIDGYSKCH----LVEL 1062 (1991)
Q Consensus 990 ~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~---~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G----~l~~ 1062 (1991)
.++|+..|++....|... .+..+-..+...+.. ..+.+.+......| +......|..+|...+ ..+.
T Consensus 90 ~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHH
Confidence 788888888887766433 333333333332222 33444444444444 3445556666666666 4455
Q ss_pred HHHHHHhcCCCchhhhhHHHHhhhhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHh
Q 040435 1063 AWKLFNDVKKPDVVLWSTMIAGFTLCG---RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRR 1139 (1991)
Q Consensus 1063 A~~lf~~m~~~d~~syn~LI~~y~~~g---~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~ 1139 (1991)
|..+++.....+..++..|...|.+.| +.++|++.|++..+.|- ++...+
T Consensus 164 a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~-------------------------- 216 (452)
T 3e4b_A 164 VERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRV-------------------------- 216 (452)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHH--------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHH--------------------------
Confidence 556666666655567777777777777 77777777777666552 222211
Q ss_pred ccccchhHHHHHHHHHHhc----CCHHHHHHHHHhccCCCHhHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 040435 1140 CLAEEVAVGTAVVDMYAKC----GAIEASRKAFDQISRKNIVSWSAMVAA-Y--GMNGLAHEALALVAEMKLGGLQPNAV 1212 (1991)
Q Consensus 1140 g~~~d~~v~naLI~~y~k~----G~~e~A~~lf~~m~~~d~~s~n~LI~a-y--~~~G~~~eAl~lf~eM~~~Gi~Pd~~ 1212 (1991)
..|..+|... ++.++|...|++....+...+..|... | ...|+.++|+++|++..+.| +..
T Consensus 217 ---------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 217 ---------DSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp ---------HHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred ---------HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 2233333322 567777777776663345566666665 3 35678888888888888766 555
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHCccCCCCCHHH
Q 040435 1213 TTLSVLSACSHGG-----LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELDIAIDLINQMPDNLKATASA 1283 (1991)
Q Consensus 1213 T~~~LL~ac~~~G-----~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd~~~ 1283 (1991)
.+..|-..|. .| +.++|.++|+... .-+...+..|..+|.. ..++++|.+++++..+.. +...
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A 356 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSA 356 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHH
Confidence 5566655555 44 8888888888663 2356667777777765 338888988888876532 3345
Q ss_pred HHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1284 WGALLSACRS----YGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1284 ~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
...|...|.. ..|.+.|...++++.+.++. .+-..+..+...
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~ 402 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAP 402 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHh
Confidence 5566666653 45888898888888887653 344455555433
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.94 E-value=1.3e-08 Score=126.92 Aligned_cols=224 Identities=10% Similarity=-0.002 Sum_probs=187.9
Q ss_pred HHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC-HHHHHHHHHhccC---CCHhHHHHHHHHHH
Q 040435 1112 TIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA-IEASRKAFDQISR---KNIVSWSAMVAAYG 1187 (1991)
Q Consensus 1112 T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~-~e~A~~lf~~m~~---~d~~s~n~LI~ay~ 1187 (1991)
.+..+-..+...|+.+.|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++.+ .+...|+.+...|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555666778899999999999999875 3467788899999999997 9999999998875 46789999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHHH
Q 040435 1188 MNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR-AGELDI 1265 (1991)
Q Consensus 1188 ~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r-~G~~ee 1265 (1991)
..|++++|+..|+++++.. +-+...|..+..++...|++++|++.++++++ +.| +...|..+..+|.+ .|..++
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999999853 33677888999999999999999999999987 567 47889999999999 666577
Q ss_pred H-----HHHHHHCccCCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC---------
Q 040435 1266 A-----IDLINQMPDNLKATASAWGALLSACRSYG--NTELGAGATSRILELEAQNSAGYLLASSMYAAGG--------- 1329 (1991)
Q Consensus 1266 A-----~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g--~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G--------- 1329 (1991)
| ++.++++....+.+..+|..+...+...| +.+.|...++++ +.+|+++..+..|+.+|...|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 47788776645567889999999999888 689999999998 999999999999999999975
Q ss_pred CchhHHHHHHHH
Q 040435 1330 LWVESSGTRLLA 1341 (1991)
Q Consensus 1330 ~~~ea~~vr~~m 1341 (1991)
..++|..+.+.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 236666665544
No 69
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.92 E-value=2.2e-08 Score=114.38 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=111.5
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+...|..+...+.+.|++++|+..|++..+. .|+ +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~a~~~lg~ 47 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQ----------------------------------DPEALYWLAR 47 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSS----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHH
Confidence 4456666777777777777777777776653 332 2233334444
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMN-----------GLAHEALALVAEMKLGGLQP-NAVTTLSVL 1218 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~-----------G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL 1218 (1991)
.|.+.|++++|...|++..+ | +...|..+...|... |++++|+..|++..+. .| +...+..+.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg 125 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRG 125 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 45555555555555555432 2 344555555555555 7777777777776653 34 345566666
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.++...|++++|++.|++.++.. .+...+..+..+|.+.|++++|...++++.+..+.+..++..+...+...|+.+
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred HHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH
Confidence 66677777777777777766542 556666777777777777777777777765544456667777777777777777
Q ss_pred HHHHHHHHH
Q 040435 1299 LGAGATSRI 1307 (1991)
Q Consensus 1299 ~A~~~~e~l 1307 (1991)
+|...++++
T Consensus 203 ~A~~~~~~~ 211 (217)
T 2pl2_A 203 EAARAAALE 211 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 777766654
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.92 E-value=8.7e-09 Score=128.95 Aligned_cols=273 Identities=11% Similarity=-0.012 Sum_probs=191.8
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------Cchhhh
Q 040435 1011 TLVNILQICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PDVVLW 1078 (1991)
Q Consensus 1011 T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d~~sy 1078 (1991)
.+..+-..+...|++++|...+..+++...... ..++..+...|...|++++|...|++..+ ....+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455567789999999999999998753321 24788899999999999999999987643 234567
Q ss_pred hHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhc
Q 040435 1079 STMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKC 1158 (1991)
Q Consensus 1079 n~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~ 1158 (1991)
..+...|...|++++|+..|.+..+.. ...++ ......++..+...|...
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~---------------~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA---------------RQLGD---------------RLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTC---------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHhhc---------------hHHHHHHHHHHHHHHHHc
Confidence 788888888999999999888875420 00000 011123444555556666
Q ss_pred CC-----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-
Q 040435 1159 GA-----------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN- 1210 (1991)
Q Consensus 1159 G~-----------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd- 1210 (1991)
|+ +++|...|++..+ . ....|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 6666666655432 1 234677788888888888888888888765211 012
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---C---
Q 040435 1211 ---AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---L--- 1277 (1991)
Q Consensus 1211 ---~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~--- 1277 (1991)
..++..+...+...|++++|.++++...+...-..+ ...+..+..+|.+.|++++|.+.++++... .
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 226677778888999999999998877653211111 467788889999999999999999887541 1
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1278 KATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.....++..+...+...|+.++|...+++++++.+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 011457888889999999999999999999998764
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=1.6e-07 Score=113.28 Aligned_cols=220 Identities=8% Similarity=0.015 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------hccCh-------HHHHHHHHHHHHhccccchhHHHHHHHHHHh
Q 040435 1092 REAIAVFQEMNQAQEKPNAITIINLLEACS-------VATEL-------SSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK 1157 (1991)
Q Consensus 1092 eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a-------~~g~l-------e~a~~i~~~~~k~g~~~d~~v~naLI~~y~k 1157 (1991)
++|+.+|++..... .-+...|..+...+. ..|+. ++|..+++.+++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666676666531 123334444433332 34664 7777888777774223456688888999999
Q ss_pred cCCHHHHHHHHHhccC--C-CHh-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR--K-NIV-SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACS-HGGLVEEGLS 1232 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~--~-d~~-s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~-~~G~~e~A~~ 1232 (1991)
.|++++|..+|+++.+ | +.. .|..++..+.+.|+.++|..+|++..+.+ +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998875 3 343 89999999999999999999999998754 234444544433322 3699999999
Q ss_pred HHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 040435 1233 FFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN--LKA--TASAWGALLSACRSYGNTELGAGATSRI 1307 (1991)
Q Consensus 1233 i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~l 1307 (1991)
+|+..++. .| +...|..++..+.+.|++++|..+|+++... ++| ....|..++.....+|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998874 44 5788899999999999999999999998763 344 4779999999999999999999999999
Q ss_pred HhcCCCCch
Q 040435 1308 LELEAQNSA 1316 (1991)
Q Consensus 1308 lel~P~~~~ 1316 (1991)
++..|+++.
T Consensus 268 ~~~~p~~~~ 276 (308)
T 2ond_A 268 FTAFREEYE 276 (308)
T ss_dssp HHHTTTTTS
T ss_pred HHHcccccc
Confidence 999998653
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.90 E-value=8.6e-08 Score=122.51 Aligned_cols=169 Identities=11% Similarity=0.124 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcC----CHHHHHHHHHhccCCCHhHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040435 1147 VGTAVVDMYAKCG----AIEASRKAFDQISRKNIVSWSAMVAAYGMNG---LAHEALALVAEMKLGGLQPNAVTTLSVLS 1219 (1991)
Q Consensus 1147 v~naLI~~y~k~G----~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G---~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ 1219 (1991)
....|..+|...+ ..+.|..++......+...+..|...|...| +.++|++.|++..+.| .++...+..|..
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~ 221 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVAR 221 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 3334444444444 2333333444444434445555555555555 4555555555555444 233333233333
Q ss_pred HHHhc----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1220 ACSHG----GLVEEGLSFFNSMVQDHGVEPALEHYSCMVDM-L--ARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1220 ac~~~----G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~-l--~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.|... ++.++|.++|+... .-+...+..|..+ | ...|++++|.+++++..+. .+...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 33322 35555555555442 1123334444443 2 2344555555555554431 23444444444444
Q ss_pred HcC-----ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1293 SYG-----NTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1293 ~~g-----~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
.| |.++|...++++. |.++.++..|+.+|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred -cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 33 5555555555544 4455555555555544
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.89 E-value=2.2e-08 Score=134.45 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=142.5
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSC 1252 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~ 1252 (1991)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|++.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3567888899999999999999999998873 454 66788888999999999999999999876 6775 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCch
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWV 1332 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ 1332 (1991)
+..+|.+.|++++|++.+++..+..+.+..+|..|..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999877545678899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 040435 1333 ESSGTRLL 1340 (1991)
Q Consensus 1333 ea~~vr~~ 1340 (1991)
+|.+..+.
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.87 E-value=2.1e-08 Score=120.25 Aligned_cols=266 Identities=12% Similarity=0.013 Sum_probs=166.0
Q ss_pred HHHhccCChhhHHHHHHHHHHhcCCCc---hhhhhhHHHHHHhcCCHHHHHHHHHhcCC---------CchhhhhHHHHh
Q 040435 1017 QICKCFVHPMECKSVHCVILRRAFESN---ELVLNSLIDGYSKCHLVELAWKLFNDVKK---------PDVVLWSTMIAG 1084 (1991)
Q Consensus 1017 ~a~~~~g~~~~a~~i~~~~~~~g~~~d---~~v~naLI~~y~k~G~l~~A~~lf~~m~~---------~d~~syn~LI~~ 1084 (1991)
..+...|+++.|...+..+++...... ..++..+...|...|++++|...|++..+ ....+|..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 344556677777777766666532211 24555666666666666666666655432 113345555556
Q ss_pred hhhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCC---
Q 040435 1085 FTLCGRPREAIAVFQEMNQAQE-KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGA--- 1160 (1991)
Q Consensus 1085 y~~~g~~eeAl~lf~~M~~~Gv-~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~--- 1160 (1991)
|...|++++|+..+.+..+..- .++. .....++..+...|...|+
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~~~~~~ 141 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHAKGKSFG 141 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHHcCcccc
Confidence 6666666666666655433100 0010 0012244555566666666
Q ss_pred -----------------HHHHHHHHHhccC-----C----CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC---
Q 040435 1161 -----------------IEASRKAFDQISR-----K----NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN--- 1210 (1991)
Q Consensus 1161 -----------------~e~A~~lf~~m~~-----~----d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd--- 1210 (1991)
+++|...+++..+ . ....+..+...|...|++++|+..+++..+... .++
T Consensus 142 ~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 221 (338)
T 3ro2_A 142 CPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 221 (338)
T ss_dssp SSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH
Confidence 6666666655432 1 234677778888888888888888888764210 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCC--CC----
Q 040435 1211 -AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNL--KA---- 1279 (1991)
Q Consensus 1211 -~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~--~p---- 1279 (1991)
..++..+...+...|++++|.++++...+...-.++ ...+..+..+|.+.|++++|.+.++++.... ..
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 301 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG 301 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 226677777888889999999988877653211122 4577888889999999999999988875410 01
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1280 TASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1280 d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
...+|..+...+...|+.+.|...+++++++.+.
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 1457888899999999999999999999988764
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.86 E-value=7.6e-09 Score=123.40 Aligned_cols=167 Identities=11% Similarity=0.035 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCC
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GLQ 1208 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi~ 1208 (1991)
.++..+...|...|++++|...|+++.+ + ....|..+...|...|++++|+++|+++.+. +-.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555556666666666665554432 1 1234555555666666666666666665542 112
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1209 PN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDH------GVEPA-------LEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1209 Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~------gi~P~-------~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
|+ ..++..+...+...|++++|.++++.+.+.. ...+. ...+..+...+...+.+.+|...++...
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 21 2244555555566666666666666554310 01111 1112222222333333344444444433
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1275 DNLKATASAWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1275 ~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
...+....+|..|..++...|+.++|...+++++++.|
T Consensus 272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 22222344555555555555555555555555555544
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.86 E-value=6.7e-08 Score=105.27 Aligned_cols=166 Identities=13% Similarity=0.019 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH 1223 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~ 1223 (1991)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344455555556666666666655543 234455555555555555555555555555432 2234444444555555
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
.|++++|.++++.+.+. ...+...+..+..++.+.|++++|.+.++++.+..+.+..+|..+...+...|+.+.|...
T Consensus 89 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555432 1123444444555555555555555555554432233444555555555555555555555
Q ss_pred HHHHHhcCCCCc
Q 040435 1304 TSRILELEAQNS 1315 (1991)
Q Consensus 1304 ~e~llel~P~~~ 1315 (1991)
+++++++.|+++
T Consensus 167 ~~~~~~~~~~~~ 178 (186)
T 3as5_A 167 FKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHcCCCch
Confidence 555555554443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.86 E-value=7e-08 Score=105.09 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=143.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.++++.+.+. .| +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHH
Confidence 467778889999999999999999987643 346778888889999999999999999999764 44 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
.+.+.|++++|.+.++++....+.+..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999877556788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040435 1336 GTRLLAK 1342 (1991)
Q Consensus 1336 ~vr~~m~ 1342 (1991)
...+...
T Consensus 165 ~~~~~~~ 171 (186)
T 3as5_A 165 PHFKKAN 171 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8766543
No 78
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.83 E-value=9.5e-06 Score=107.75 Aligned_cols=432 Identities=9% Similarity=-0.008 Sum_probs=223.1
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCC-CCchHHH
Q 040435 770 RDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGA---YYEGLQVHGYIIRSGL-WAVHSVQ 845 (1991)
Q Consensus 770 ~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~---~~~a~~l~~~~~k~G~-~~d~~v~ 845 (1991)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+.++|+..+.... .|++.+|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 47888999999888888999999999998875 44556677777777777777 8888888888877542 3666677
Q ss_pred HHHHHHHhh-CCH--------HHHHHHHHhc-----C-CC-CHHHHHHHHHHHH---------HcCChHHHHHHHHHHHh
Q 040435 846 NSVLSMYVD-ADM--------ECARKLFDEM-----C-ER-DVISWSVMIGGYV---------QSAEAFSGLRLFRQMVS 900 (1991)
Q Consensus 846 naLi~~yak-g~~--------e~A~~vf~~m-----~-~~-d~~syn~LI~a~~---------~~G~~~eAl~lf~~M~~ 900 (1991)
...+....+ +++ +..+++|+.. . .+ +...|...|.-.. ..++.+.+..+|.+.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 776665444 332 3344666653 1 22 3456776666433 22345667777777664
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhcc-------CCC--
Q 040435 901 GFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSE-------MPQ-- 971 (1991)
Q Consensus 901 ~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~-------m~~-- 971 (1991)
. ....-..+|..........+. ..++.++.... ..++.|+..+.+ +.+
T Consensus 223 i-P~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 223 Q-PMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp S-CCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred C-ccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhcc
Confidence 2 111111222222111111111 11222211110 011111111111 100
Q ss_pred ------------C--------CHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHH
Q 040435 972 ------------K--------NKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSV 1031 (1991)
Q Consensus 972 ------------~--------dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i 1031 (1991)
| ....|...|.---.++. ..+... ..+.+..+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~----------------~l~~~~------------~~~Rv~~~ 331 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL----------------ELSDDL------------HKARMTYV 331 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT----------------CCCHHH------------HHHHHHHH
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc----------------cccchh------------hHHHHHHH
Confidence 0 01223333321111110 000000 01122233
Q ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHHhcCC--C-chhhhhHHHHhhhhcCChHHHHHHHHHHHHCC--
Q 040435 1032 HCVILRRAFESNELVLNSLIDGYSKCHLVELAW-KLFNDVKK--P-DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQ-- 1105 (1991)
Q Consensus 1032 ~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~-~lf~~m~~--~-d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~G-- 1105 (1991)
++.++..- .....+|-..+..+.+.|+.++|. ++|++... | +...|-..+...-+.|++++|.++|+++....
T Consensus 332 Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~ 410 (679)
T 4e6h_A 332 YMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHL 410 (679)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33333321 223344444444444455555553 55544432 2 23334444445555555555555555554321
Q ss_pred -------CCCC------------HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC-CHHHHH
Q 040435 1106 -------EKPN------------AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG-AIEASR 1165 (1991)
Q Consensus 1106 -------v~Pd------------~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G-~~e~A~ 1165 (1991)
-.|+ ...|...+....+.+.++.|+.++..+.+.-......+|-..+.+-.+++ +.+.|.
T Consensus 411 ~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar 490 (679)
T 4e6h_A 411 DLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTAC 490 (679)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHH
Confidence 0121 22455666666677778888888888777611112233333333334444 478888
Q ss_pred HHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1166 KAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP--NAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1166 ~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P--d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
++|+...+ .+...|...+.-....|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.+++.+.
T Consensus 491 ~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 491 KVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887764 355667777777777788888888888877643222 2235666666667778888888888888764
Q ss_pred cCCCCCHHHHHHHHHHH
Q 040435 1241 HGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1241 ~gi~P~~~~y~~Li~~l 1257 (1991)
.|+......+++-|
T Consensus 571 ---~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 571 ---FPEVNKLEEFTNKY 584 (679)
T ss_dssp ---STTCCHHHHHHHHT
T ss_pred ---CCCCcHHHHHHHHh
Confidence 45444444444444
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=119.82 Aligned_cols=239 Identities=10% Similarity=0.065 Sum_probs=161.5
Q ss_pred chhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHH
Q 040435 1074 DVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVD 1153 (1991)
Q Consensus 1074 d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~ 1153 (1991)
+..+|..+...|...|++++|+.+|+++.+.. .............++..+..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~ 77 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDL----------------------------EKTSGHDHPDVATMLNILAL 77 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHHcCCCCHHHHHHHHHHHH
Confidence 34567777888888888888888887775410 00000011223445666777
Q ss_pred HHHhcCCHHHHHHHHHhccC-----------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR-----------KNIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GLQP-NAVTTL 1215 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~-----------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi~P-d~~T~~ 1215 (1991)
.|...|++++|...|++..+ ....+|..+...|...|++++|+..|+++.+. +-.| ....+.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 78888888888888876642 13467888999999999999999999998764 2223 334577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--------CCC--
Q 040435 1216 SVLSACSHGGLVEEGLSFFNSMVQDH-----GVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN--------LKA-- 1279 (1991)
Q Consensus 1216 ~LL~ac~~~G~~e~A~~i~~~M~~~~-----gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--------~~p-- 1279 (1991)
.+...+...|++++|.++++.+.+.. +..|. ...+..+..+|.+.|++++|.+.++++.+. ..+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 78888999999999999999987631 11332 467888999999999999999999987641 111
Q ss_pred -----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1280 -----TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1280 -----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
....+..+...+...+....+...++++.+..|..+..+..++.+|...|++++|....+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1223334444455666777788888888889999999999999999999999999987654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.79 E-value=1.5e-07 Score=107.74 Aligned_cols=206 Identities=10% Similarity=0.029 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHH
Q 040435 1110 AITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAY 1186 (1991)
Q Consensus 1110 ~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay 1186 (1991)
...+...-..+...|++++|...+..+++....++...+..+...|.+.|++++|...|++..+ | +...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 3444444445555555555555555555544323334444455555555555555555555432 2 234555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPN-A-------VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVD 1255 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd-~-------~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~ 1255 (1991)
...|++++|++.|++..+. .|+ . ..|..+...+...|++++|.+.|+..++ +.|+ ...|..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 5555555555555555542 222 2 2244444444555555555555555543 3443 234444444
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+|...|+ ..++++......+...+..+. ....+.++.|...++++++++|+++.....+..+...
T Consensus 162 ~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHH-----HHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 4443332 222222221112222232222 2233445999999999999999999988888777543
No 81
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.74 E-value=5.5e-07 Score=108.58 Aligned_cols=212 Identities=7% Similarity=-0.009 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHH-------hcCCH-------HHHHHHHHhccC---C-CHhHHHHHHHHHHH
Q 040435 1127 SSSKWAHGIAIRRCLAEEVAVGTAVVDMYA-------KCGAI-------EASRKAFDQISR---K-NIVSWSAMVAAYGM 1188 (1991)
Q Consensus 1127 e~a~~i~~~~~k~g~~~d~~v~naLI~~y~-------k~G~~-------e~A~~lf~~m~~---~-d~~s~n~LI~ay~~ 1188 (1991)
+.|..+++.+++.. +.+..+|..+...+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666777777653 446667777777665 45886 999999998764 3 56689999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHH-cCCHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNA-V-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLAR-AGELD 1264 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~-~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r-~G~~e 1264 (1991)
.|++++|.++|+++.+ +.|+. . .|..+...+.+.|++++|.++|++.++ ..| +...|...+....+ .|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999997 45643 2 788888899999999999999999876 444 34555544444333 69999
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCC-CchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL---EAQ-NSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel---~P~-~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|.++++++.+..+.+...|..++..+...|+.+.|..+++++++. .|+ ....+..++..+...|+.++|..+...
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987655668899999999999999999999999999995 554 566788889999999999999988766
Q ss_pred HHHc
Q 040435 1341 AKER 1344 (1991)
Q Consensus 1341 m~~~ 1344 (1991)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.73 E-value=2.4e-07 Score=115.18 Aligned_cols=227 Identities=7% Similarity=-0.047 Sum_probs=108.8
Q ss_pred HhhhhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhhccChHHHHHHHHHHHHhcc------ccchhHHHHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQ-EKPN----AITIINLLEACSVATELSSSKWAHGIAIRRCL------AEEVAVGTAV 1151 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~G-v~Pd----~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~------~~d~~v~naL 1151 (1991)
..+...|++++|+..|++..+.- -.++ ..++..+-..+...|+.+.|...+..+.+.-- .....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34455666666666666654420 0112 12333333344444444444444444333210 1112344555
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLG----GL-QPNAVTTLSV 1217 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~----Gi-~Pd~~T~~~L 1217 (1991)
...|...|++++|...|++..+ ++ ..+|..+...|...|++++|++.|++..+. +- .....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 5566666666666666655432 11 125555666666666666666666665541 11 1123345555
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
...+...|++++|.+++++..+...-..+ ...+..+..+|.+.|+ +++|..++++... .+....++..|...+
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHH
Confidence 55566666666666666555432111111 1223445555555555 5555555555531 111223444555555
Q ss_pred HHcCChhHHHHHHHHHHhc
Q 040435 1292 RSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel 1310 (1991)
...|+.+.|...+++++++
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 5555666565555555553
No 83
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.68 E-value=1.2e-07 Score=121.82 Aligned_cols=179 Identities=10% Similarity=-0.035 Sum_probs=156.9
Q ss_pred CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLA-HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFN 1235 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~-~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~ 1235 (1991)
.+++|...+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666667766543 3678899999999999999 99999999998753 2347789999999999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc--------CChh
Q 040435 1236 SMVQDHGVEPALEHYSCMVDMLARA---------GELDIAIDLINQMPDNLKATASAWGALLSACRSY--------GNTE 1298 (1991)
Q Consensus 1236 ~M~~~~gi~P~~~~y~~Li~~l~r~---------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~--------g~~e 1298 (1991)
..++ +.|+...+..+..+|.+. |++++|.+.++++.+..+.+..+|..|..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9875 678888999999999999 9999999999998875566789999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1299 LGAGATSRILELEA---QNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1299 ~A~~~~e~llel~P---~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+|...++++++++| +++..|..++.+|...|++++|....+...
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999998766543
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.67 E-value=6.3e-06 Score=101.67 Aligned_cols=222 Identities=12% Similarity=-0.002 Sum_probs=141.8
Q ss_pred HHhhccChHHHHHHHHHHHHhcccc-----chhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHH
Q 040435 1119 ACSVATELSSSKWAHGIAIRRCLAE-----EVAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAM 1182 (1991)
Q Consensus 1119 a~a~~g~le~a~~i~~~~~k~g~~~-----d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~L 1182 (1991)
.+...|+++.|...+....+..-.. .......+...|...|++++|...+++..+ + ....+..+
T Consensus 62 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 141 (373)
T 1hz4_A 62 VLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIR 141 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHH
Confidence 3444455555555444443321110 122345566677788888888888776542 1 12355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGLQ--P--NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYS-----CM 1253 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi~--P--d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~-----~L 1253 (1991)
...|...|++++|...+++.....-. + ...++..+...+...|++++|..+++.......-......+. .+
T Consensus 142 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 221 (373)
T 1hz4_A 142 AQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVR 221 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHH
Confidence 77788888898888888887653211 1 234566677778888999999988888765321111111121 23
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKA----TASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASS 1323 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~p----d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~ 1323 (1991)
+..+.+.|++++|...+++.....+. ....+..+...+...|+.++|...++++++..+.. ...+..++.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~ 301 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 301 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 34577889999999999888653211 13356777788888899999999998887764431 236677788
Q ss_pred HHHhCCCchhHHHHHHH
Q 040435 1324 MYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1324 lya~~G~~~ea~~vr~~ 1340 (1991)
+|...|+.++|......
T Consensus 302 ~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 302 LYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 89999999888875543
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.67 E-value=4e-07 Score=104.17 Aligned_cols=153 Identities=8% Similarity=-0.036 Sum_probs=87.2
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMV 1254 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li 1254 (1991)
...|..+...|...|++++|++.|++..+..-.++...+..+..++...|++++|.+.++..++ ..|+ ...|..+.
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~ 83 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKS 83 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHH
Confidence 3445555555566666666666666655543224555555555555566666666666665544 3443 34555566
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CchHHHHHHHHH
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATA-------SAWGALLSACRSYGNTELGAGATSRILELEAQ--NSAGYLLASSMY 1325 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~-------~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~~~yvlL~~ly 1325 (1991)
.+|.+.|++++|.+.+++..+..+.+. .+|..+...+...|++++|+..++++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 666666666666666665554323333 34555555566666666666666666666666 556666666666
Q ss_pred HhCCCc
Q 040435 1326 AAGGLW 1331 (1991)
Q Consensus 1326 a~~G~~ 1331 (1991)
...|+.
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 86
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.63 E-value=3.8e-07 Score=113.37 Aligned_cols=222 Identities=11% Similarity=-0.048 Sum_probs=168.1
Q ss_pred HHHhhccChHHHHHHHHHHHHh----cccc-chhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----HhHHHHH
Q 040435 1118 EACSVATELSSSKWAHGIAIRR----CLAE-EVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN-----IVSWSAM 1182 (1991)
Q Consensus 1118 ~a~a~~g~le~a~~i~~~~~k~----g~~~-d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d-----~~s~n~L 1182 (1991)
..+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...|++..+ ++ ..+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4466889999999999998875 2112 356788899999999999999999987653 22 3578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLGGL-QPNA----VTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEP-ALEHYSCM 1253 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd~----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P-~~~~y~~L 1253 (1991)
...|...|++++|++.|++..+..- .++. .++..+...+...|++++|.+++++..+-. +..| ....+..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999999998875311 1222 367888889999999999999999886521 2324 35678999
Q ss_pred HHHHHHcCCHHHHHHHHHHCccC----CCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1254 VDMLARAGELDIAIDLINQMPDN----LKA-TASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~----~~p-d~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
..+|.+.|++++|.+.+++..+. ..| ....+..|...+...|+ .+.|...+++. ...|.....+..|+.+|
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence 99999999999999999987541 111 12335667777778888 67777766665 34445566788999999
Q ss_pred HhCCCchhHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~ 1340 (1991)
...|++++|....+.
T Consensus 350 ~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 350 HERKNFQKASAYFLK 364 (383)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
Confidence 999999999986653
No 87
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.62 E-value=2.8e-07 Score=123.80 Aligned_cols=165 Identities=14% Similarity=0.113 Sum_probs=147.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLS 1219 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ 1219 (1991)
+...++.|...|.+.|++++|++.|++..+ | +..+|+.|...|.+.|++++|++.|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 466788899999999999999999998764 3 5789999999999999999999999999874 564 678999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
++...|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++..+..+.+..+|..|..++...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 6774 7899999999999999999999999988755567899999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 040435 1299 LGAGATSRILELEAQ 1313 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~ 1313 (1991)
+|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987664
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.52 E-value=1.7e-06 Score=88.28 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l 1257 (1991)
.|..+...|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|.++++.+.+. ...+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45556666666666666666666665532 224445555555666666666666666665542 112344555555666
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.+.|++++|.+.++++....+.+..+|..+...+...|+.+.|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 66666666666666554433334555666666666666666666666666665554
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.51 E-value=2.1e-06 Score=106.49 Aligned_cols=217 Identities=13% Similarity=0.010 Sum_probs=117.2
Q ss_pred hccChHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----HhHHHHHHHHH
Q 040435 1122 VATELSSSKWAHGIAIRRCL-----AEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-----KN-----IVSWSAMVAAY 1186 (1991)
Q Consensus 1122 ~~g~le~a~~i~~~~~k~g~-----~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d-----~~s~n~LI~ay 1186 (1991)
..|+++.|...+..+.+..- .....++..+...|...|+++.|...+++..+ ++ ..+++.+...|
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 44455555555544443211 11233455566666666666666666655432 11 33566666677
Q ss_pred HHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcC--CCC-CHHHHHHHHHHHH
Q 040435 1187 GMNGLAHEALALVAEMKLG----GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHG--VEP-ALEHYSCMVDMLA 1258 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~----Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~g--i~P-~~~~y~~Li~~l~ 1258 (1991)
...|++++|++.|++..+. |-.+ ...++..+...+...|++++|.+++++.++... ..| ....+..+..+|.
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 272 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence 7777777777777665542 1111 123455566666777777777777776654110 112 2455666777777
Q ss_pred HcCCHHHHHHHHHHCccC----CCC-CHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1259 RAGELDIAIDLINQMPDN----LKA-TASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~----~~p-d~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+.|++++|.+.+++..+. ..+ ....+..|...+...|+ .+.|...+++. ...|.....+..++.+|...|+
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCC
Confidence 777777777777665431 111 12334444444445555 45555544441 2223334456667777777777
Q ss_pred chhHHHHHH
Q 040435 1331 WVESSGTRL 1339 (1991)
Q Consensus 1331 ~~ea~~vr~ 1339 (1991)
+++|....+
T Consensus 352 ~~~A~~~~~ 360 (378)
T 3q15_A 352 FEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766443
No 90
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.51 E-value=6.9e-06 Score=101.89 Aligned_cols=228 Identities=10% Similarity=0.023 Sum_probs=163.0
Q ss_pred HHhhhhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHhhccChHHHHHHHHHHHHhcc-----c-cchhHHHH
Q 040435 1082 IAGFTLCGRPREAIAVFQEMNQAQ-EKPN----AITIINLLEACSVATELSSSKWAHGIAIRRCL-----A-EEVAVGTA 1150 (1991)
Q Consensus 1082 I~~y~~~g~~eeAl~lf~~M~~~G-v~Pd----~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~-----~-~d~~v~na 1150 (1991)
...+...|++++|+..|++..+.- -.++ ..++..+-..+...|+.+.|...+..+.+..- . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 334556777777777777765431 1122 23445555566677777777777766654321 1 12456778
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040435 1151 VVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKL-----GGLQPNAVTTLS 1216 (1991)
Q Consensus 1151 LI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~-----~Gi~Pd~~T~~~ 1216 (1991)
+...|...|++++|...|++..+ ++ ..+++.|...|...|++++|++.|++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 88899999999999999887653 22 35788888999999999999999999876 33 223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
+...+.+.|+.++|.+++++..+...-..+ ...+..+..++...|+ +++|..++++... .+.....+..|...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHH
Confidence 888999999999999999998764332222 3456667777777888 9999999998642 12234567788889
Q ss_pred HHHcCChhHHHHHHHHHHhcC
Q 040435 1291 CRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~ 1311 (1991)
+...|+.+.|...++++++..
T Consensus 346 y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988753
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.50 E-value=1.7e-07 Score=100.55 Aligned_cols=141 Identities=9% Similarity=-0.011 Sum_probs=112.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC
Q 040435 1185 AYGMNGLAHEALALVAEMKLGGLQPN-AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE 1262 (1991)
Q Consensus 1185 ay~~~G~~~eAl~lf~eM~~~Gi~Pd-~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~ 1262 (1991)
.+...|+.++|++.+++... ..|+ ...+..+...|...|++++|.+.|++.++ +.| +...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCc
Confidence 34456778888888877654 2332 33455677778888899999998888876 566 47888889999999999
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHH-HHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGA-TSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~-~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
+++|...+++..+..+.+..+|..|...+...|+.++|.+. ++++++++|+++..|.+.+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999988774455788999999999999998776654 699999999999999999999998885
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.49 E-value=6.6e-07 Score=104.57 Aligned_cols=221 Identities=12% Similarity=0.051 Sum_probs=154.1
Q ss_pred hhccChHHHHHHHHHHHHh-------ccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHH
Q 040435 1121 SVATELSSSKWAHGIAIRR-------CLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAM 1182 (1991)
Q Consensus 1121 a~~g~le~a~~i~~~~~k~-------g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~L 1182 (1991)
...|+++.|...+..+++. ..+....++..+...|...|++++|...|+++.+ + ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776653 2234567788899999999999999999987652 1 34578889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc-----CCCC-CHHH
Q 040435 1183 VAAYGMNGLAHEALALVAEMKLG------GLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH-----GVEP-ALEH 1249 (1991)
Q Consensus 1183 I~ay~~~G~~~eAl~lf~eM~~~------Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~-----gi~P-~~~~ 1249 (1991)
...|...|++++|++.|++..+. .-.| ...++..+...+...|++++|.++++++.+.. +-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1123 34567788888999999999999999887631 1133 2567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccC---------CCCCHHHHHHHHHHHHHcCChhHHH------HHHHHHHhcCCCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDN---------LKATASAWGALLSACRSYGNTELGA------GATSRILELEAQN 1314 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~---------~~pd~~~~~~Ll~a~~~~g~~e~A~------~~~e~llel~P~~ 1314 (1991)
+..+..+|.+.|++++|.++++++.+. .......|..+.......+....+. ..++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999887531 1122334544444444433333222 2222222234556
Q ss_pred chHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1315 SAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1315 ~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
+..+..++.+|...|++++|....+..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678889999999999999999876643
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.41 E-value=4e-06 Score=85.52 Aligned_cols=129 Identities=17% Similarity=0.196 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|.++++.+.+. -..+...+..+...+.+.|++++|.++++++....+.+..+|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4566778888999999999999999764 22357788889999999999999999999987655667889999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
..|+.+.|...++++++..|.++..+..++.+|...|++++|......+.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987766544
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.41 E-value=4.4e-06 Score=99.92 Aligned_cols=170 Identities=6% Similarity=-0.060 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC----
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMN-GLAHEALALVAEMKLGGLQ-PN---- 1210 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~-G~~~eAl~lf~eM~~~Gi~-Pd---- 1210 (1991)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4556666777777777777777765543 11 34677788888885 8888888888887652100 01
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH----
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPAL-----EHYSCMVDMLARAGELDIAIDLINQMPDNLKATA---- 1281 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~-----~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---- 1281 (1991)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++.+.|++++|...+++..+. .|+.
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~ 236 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE-DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCcH
Confidence 3457777888888899999999988887631111111 15677778888889999999999888652 3321
Q ss_pred --HHHHHHHHHHH--HcCChhHHHHHHHHHHhcCCCCch
Q 040435 1282 --SAWGALLSACR--SYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1282 --~~~~~Ll~a~~--~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..+..|+.++. ..++++.|...++++.+++|....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 13445556654 345677888888777778776543
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.40 E-value=7.4e-07 Score=119.85 Aligned_cols=150 Identities=13% Similarity=-0.028 Sum_probs=80.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMV 1254 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li 1254 (1991)
...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.|++.++ +.| +...|..+.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~lg 508 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLALA 508 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHH
Confidence 3455555555555555555555555555422 12334455555555555666666665555544 344 244555555
Q ss_pred HHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1255 DMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1255 ~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
.+|.+.|++++ .+.++++.+..+.+..+|..+..++...|+.++|...++++++++|+++.++..++.+|...|+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 55556666655 5555555443334455555566566666666666666666666666655556556655555444
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.39 E-value=3.9e-06 Score=97.89 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=102.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC----------C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR----------K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLG------GL 1207 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~----------~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~------Gi 1207 (1991)
..++..+...|...|++++|...|++..+ | ...+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556666777777777777777766542 1 2456777778888888888888888887653 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc------CCCCC-HHHHHHHHHHHHHc------CCHHHHHHHHHHC
Q 040435 1208 QP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH------GVEPA-LEHYSCMVDMLARA------GELDIAIDLINQM 1273 (1991)
Q Consensus 1208 ~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~------gi~P~-~~~y~~Li~~l~r~------G~~eeA~~l~~~m 1273 (1991)
.| ...++..+...+...|++++|.++++.+.+.. ...+. ...|..+...+... ..+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 23 23467777788888888888888888776531 11222 22333333333332 2345555555555
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1274 PDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
....+....+|..|...+...|+.++|...+++++++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4332334568888899999999999999999998875
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.39 E-value=5.2e-06 Score=97.10 Aligned_cols=189 Identities=9% Similarity=-0.026 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--K-N---IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL-QPN-AVTTLS 1216 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d---~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi-~Pd-~~T~~~ 1216 (1991)
...+-.+...|.+.|++++|...|+++.+ | + ...|..+..+|.+.|++++|+..|++..+..- .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 34444566677788889999988888765 3 3 56777788888889999999999988887421 122 334555
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHhHHhcCCCCCHH-HH--------------HHHHHHHHHcCCHHHHHHHHHHC
Q 040435 1217 VLSACSH--------GGLVEEGLSFFNSMVQDHGVEPALE-HY--------------SCMVDMLARAGELDIAIDLINQM 1273 (1991)
Q Consensus 1217 LL~ac~~--------~G~~e~A~~i~~~M~~~~gi~P~~~-~y--------------~~Li~~l~r~G~~eeA~~l~~~m 1273 (1991)
+..++.. .|++++|...|+.+++.+.-.+... .. ..+...|.+.|++++|...++++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666667 8889999999988877432222211 11 56688899999999999999998
Q ss_pred ccCCCC---CHHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCCch---HHHHHHHHHHhCCCchh
Q 040435 1274 PDNLKA---TASAWGALLSACRSY----------GNTELGAGATSRILELEAQNSA---GYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1274 ~~~~~p---d~~~~~~Ll~a~~~~----------g~~e~A~~~~e~llel~P~~~~---~yvlL~~lya~~G~~~e 1333 (1991)
.+..+. ....|..+..++... |++++|...++++++..|+++. ++..+..++...|+.++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 763222 345788888888766 8889999999999999999864 44555666665555544
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.39 E-value=1.1e-05 Score=92.46 Aligned_cols=179 Identities=8% Similarity=-0.066 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV----TTLSV 1217 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~----T~~~L 1217 (1991)
+-.+...|.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.. |+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHH
Confidence 33445556666777777777776653 32 2356666667777777777777777766532 3221 22222
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHH-------------
Q 040435 1218 LSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAW------------- 1284 (1991)
Q Consensus 1218 L~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~------------- 1284 (1991)
..++...|. ..+ ..|..+...+...|++++|...++++.+..+.+..++
T Consensus 85 g~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDD-----SAL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh-----hhh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH
Confidence 222222100 000 0000011111123444444444444443322222222
Q ss_pred ----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1285 ----GALLSACRSYGNTELGAGATSRILELEAQNS---AGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1285 ----~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~---~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
..+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|....+.+...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 3456678889999999999999999999986 5688999999999999999998887776654
No 99
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.38 E-value=7.7e-05 Score=91.82 Aligned_cols=128 Identities=12% Similarity=0.115 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC----CCH-hHHHH-----HHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR----KNI-VSWSA-----MVAAYGMNGLAHEALALVAEMKLGGLQPN---AVTT 1214 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~----~d~-~s~n~-----LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd---~~T~ 1214 (1991)
+..+...+...|++++|...+++... ++. ..|.. ++..+...|+.++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 44445555555666665555554421 111 11211 22234556666666666665543221110 2234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHh---cCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQD---HGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~---~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
..+..++...|+.++|.+.++..... .|..++. ..+..+..++.+.|+.++|.+.+++...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44555566666666666666655432 1211122 3555566667777777777777766543
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.37 E-value=4.5e-06 Score=99.62 Aligned_cols=171 Identities=12% Similarity=-0.026 Sum_probs=137.6
Q ss_pred HHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1162 EASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1162 e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|.+.++.+..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 34444445444445566777888889999999999999998874 45 556778888899999999999999998865
Q ss_pred cCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--chH
Q 040435 1241 HGVEPALEHYSCM-VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN--SAG 1317 (1991)
Q Consensus 1241 ~gi~P~~~~y~~L-i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~--~~~ 1317 (1991)
..|+....... ...+.+.|+.++|.+.+++.....+.+...+..|...+...|+.++|...++++++.+|++ +.+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 46665433333 3346677888889999988876556788999999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhCCCchhHHHH
Q 040435 1318 YLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1318 yvlL~~lya~~G~~~ea~~v 1337 (1991)
+..|+.+|...|+.++|...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHH
Confidence 99999999999999998754
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.35 E-value=3.6e-06 Score=100.72 Aligned_cols=187 Identities=7% Similarity=-0.042 Sum_probs=134.4
Q ss_pred HHHHHhcCCHHHHHHHHHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PN----AVTTLSV 1217 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd----~~T~~~L 1217 (1991)
...|...|++++|...|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.... .+ ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888999999999887653 11 468999999999999999999999988652110 11 3467888
Q ss_pred HHHHHhc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH-------HHHH
Q 040435 1218 LSACSHG-GLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA-------SAWG 1285 (1991)
Q Consensus 1218 L~ac~~~-G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~-------~~~~ 1285 (1991)
...+... |++++|++.|++.++...-..+ ...+..+..+|.+.|++++|.+.+++..+..+.+. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8889996 9999999999998763211111 35688899999999999999999998865311111 2677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCchH-----HHHHHHHHH--hCCCchhHHHHH
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQNSAG-----YLLASSMYA--AGGLWVESSGTR 1338 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~-----yvlL~~lya--~~G~~~ea~~vr 1338 (1991)
.+..++...|+.+.|...++++++++|+.... +..++..|. ..+++++|....
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~ 263 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 78888999999999999999999999986543 233455554 345666655443
No 102
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.31 E-value=7.7e-06 Score=95.63 Aligned_cols=169 Identities=9% Similarity=-0.048 Sum_probs=137.1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H
Q 040435 1173 RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L 1247 (1991)
Q Consensus 1173 ~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~ 1247 (1991)
..+...+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++...|++++|...|+..++.+.-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3466777778888999999999999999998753 43 567778888999999999999999999875433333 4
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHCccCCCCCHHHH-----------------HHHHHHHHHcCChhHHHH
Q 040435 1248 EHYSCMVDMLAR--------AGELDIAIDLINQMPDNLKATASAW-----------------GALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1248 ~~y~~Li~~l~r--------~G~~eeA~~l~~~m~~~~~pd~~~~-----------------~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..+..+..++.+ .|++++|...++++....+.+...+ ..+...+...|+++.|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 567788889999 9999999999999876444444444 556788899999999999
Q ss_pred HHHHHHhcCCCC---chHHHHHHHHHHhC----------CCchhHHHHHHHHHH
Q 040435 1303 ATSRILELEAQN---SAGYLLASSMYAAG----------GLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1303 ~~e~llel~P~~---~~~yvlL~~lya~~----------G~~~ea~~vr~~m~~ 1343 (1991)
.++++++..|++ +..+..++.+|... |++++|....+...+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 999999999985 45788999999977 888999887765543
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.28 E-value=5.5e-05 Score=90.08 Aligned_cols=163 Identities=7% Similarity=0.043 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR-----KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-----NAVTTLS 1216 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~-----~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-----d~~T~~~ 1216 (1991)
..-.+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+++++|.+ ..| +..+...
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~ 179 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILN 179 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHH
Confidence 334556666666777777776666532 1345555666666667777777777776665 345 2444444
Q ss_pred HHHH--HHhcC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccC----------CCCCHH
Q 040435 1217 VLSA--CSHGG--LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDN----------LKATAS 1282 (1991)
Q Consensus 1217 LL~a--c~~~G--~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----------~~pd~~ 1282 (1991)
|..+ ....| ...+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+. .+.++.
T Consensus 180 Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 180 LAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 4444 22223 666666666666442 333222233333566667777776666654321 023455
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+...++......|+ .|.+.++++.+..|+++.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 55555555555555 566666666666666654
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.25 E-value=1e-05 Score=106.44 Aligned_cols=161 Identities=11% Similarity=-0.001 Sum_probs=127.9
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3778889999988764 357789999999999999999999999998753 335678888889999999999999999
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc---CChhHHHHHHHHHHhc
Q 040435 1235 NSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSY---GNTELGAGATSRILEL 1310 (1991)
Q Consensus 1235 ~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~---g~~e~A~~~~e~llel 1310 (1991)
++.++ +.| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++... |+.++|...++++++.
T Consensus 81 ~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99877 456 4788999999999999999999999998775556788999999999999 9999999999999999
Q ss_pred CCCCchHHHHHH
Q 040435 1311 EAQNSAGYLLAS 1322 (1991)
Q Consensus 1311 ~P~~~~~yvlL~ 1322 (1991)
+|.+...+.+++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999988887776
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.20 E-value=4.1e-05 Score=91.21 Aligned_cols=175 Identities=9% Similarity=-0.001 Sum_probs=126.5
Q ss_pred HHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1164 SRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1164 A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
|...|++... ++..++..+..+|...|++++|++++.+-+..|-.+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5666666543 455556677788888999999999998887655322 445666777888899999999999998865
Q ss_pred hcCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1240 DHGVEP-----ALEHYSCMVDM--LARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1240 ~~gi~P-----~~~~y~~Li~~--l~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
..| +-.+...|..+ ....| +..+|..+|+++.+. .|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 566 24444555544 33334 899999999998764 455333344555788889999999999887776
Q ss_pred ----------CCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1311 ----------EAQNSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1311 ----------~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
+|+++.++..++.++...|+ ++.++...+++.
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 777777766654
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.19 E-value=1.1e-05 Score=106.16 Aligned_cols=150 Identities=15% Similarity=-0.055 Sum_probs=115.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
.|+.++|++.|++..+.. +-+...+..+...+...|++++|.+.+++.++ +.| +...|..+..+|.+.|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999987642 23467888888999999999999999999875 567 4788999999999999999999
Q ss_pred HHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC---CCchhHHHHHHHHH
Q 040435 1268 DLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG---GLWVESSGTRLLAK 1342 (1991)
Q Consensus 1268 ~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~---G~~~ea~~vr~~m~ 1342 (1991)
+.+++..+..+.+...|..+..++...|+.++|...++++++++|+++..+..++.+|... |++++|....+...
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999987755667889999999999999999999999999999999999999999999999 77777776555443
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.17 E-value=1.6e-05 Score=106.97 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=131.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLS 1219 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ 1219 (1991)
+...+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|++.|++..+. .| +...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 344566677778888999999999988764 46788999999999999999999999999874 45 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC--
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN-- 1296 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~-- 1296 (1991)
++...|++++ .+.|++.++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 8999999999 999999876 566 467899999999999999999999999987434456788888888766555
Q ss_pred ---hhHHHHHHHHHHhcCCCCchHH
Q 040435 1297 ---TELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1297 ---~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.+...++.+.+.++.+.++..+
T Consensus 586 ~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 586 EVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp -CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred CCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 3555566666666666655544
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.17 E-value=6.4e-06 Score=90.33 Aligned_cols=73 Identities=11% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC--chHHHHHHHHHHhCCCchhHHHHH
Q 040435 1266 AIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN--SAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1266 A~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~--~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
|.+.+++..+..+.+...|..+..++...|+.++|...++++++.+|+. +..+..++.+|...|+.++|....
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 4555555544334456777777777777777777777777777777764 446777777777777777766543
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.16 E-value=1.5e-05 Score=82.63 Aligned_cols=109 Identities=12% Similarity=0.029 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+......+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++..+..+.+..+|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 455666777888888888888888776 455 4678888888888888888888888887764456788888899999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
...|++++|...++++++++|+++.++..|+++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999998888777665
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.15 E-value=2e-05 Score=89.00 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=116.4
Q ss_pred HHHhcCCHHHHHHHHHhccC--C-CHhHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K-NIVSWSA----------------MVAAYGMNGLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~----------------LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
.+.+.|++++|...|++..+ | +...|.. +...|.+.|++++|+..|++..+.. +-+...+
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 91 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCL 91 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHH
Confidence 44556777777777766653 2 2334444 8889999999999999999998743 2356788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCC--HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGE--LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~--~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
..+..++...|++++|.+.|++.++ +.|+ ...|..+..+|...|. .++|...++.... ..|....|..+..++
T Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 92 EACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-PTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-CCchhHHHHHHHHHH
Confidence 8888999999999999999999987 5774 7788888888876654 4556666666542 223334556667777
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1292 RSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...|++++|+..+++++++.|+..
T Consensus 168 ~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCHH
Confidence 888999999999999999999754
No 111
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.13 E-value=2.9e-05 Score=78.02 Aligned_cols=117 Identities=17% Similarity=0.185 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
...+..+...+...|++++|.++++.+.+. ...+...+..+...+.+.|++++|..+++++....+.+..+|..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666667777788888888888877653 122466778888888888899999888888776445678889999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+...|+.+.|...+++++++.|+++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998888887654
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.12 E-value=2.5e-06 Score=91.34 Aligned_cols=115 Identities=13% Similarity=-0.003 Sum_probs=99.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|++.++.... ..|+ ...+-.+..+|.+.|++++|.+.+++..+..+.+..+|..|...+...|+.+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34566889999999987643 4453 4456678999999999999999999998755668999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
.|+..++++++++|+++.++..++.+|...|++++++..
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999987654
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.11 E-value=5.3e-05 Score=84.99 Aligned_cols=130 Identities=8% Similarity=-0.020 Sum_probs=87.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDML 1257 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l 1257 (1991)
+..+...+...|++++|++.|++. +.|+...+..+..++...|++++|.+.++..++. .| +...|..+..+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHH
Confidence 334455555666666666666554 2455566666666666666666666666666542 33 355666666677
Q ss_pred HHcCCHHHHHHHHHHCccCCCCC----------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1258 ARAGELDIAIDLINQMPDNLKAT----------------ASAWGALLSACRSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd----------------~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.+.|++++|.+.++++.+..+.+ ..+|..+..++...|+.+.|...+++++++.|++.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 77777777777776665432222 37888888899999999999999999999999763
No 114
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.10 E-value=0.0011 Score=85.15 Aligned_cols=368 Identities=10% Similarity=-0.024 Sum_probs=208.7
Q ss_pred cC-ChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hHHH
Q 040435 885 SA-EAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKD-TDSA 962 (1991)
Q Consensus 885 ~G-~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~-~e~A 962 (1991)
.| +...|..+|+.+... -|. ++.+.++++|+..+.. .|++.+|...+..-.+.+. .+..
T Consensus 7 ~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 367777777777653 232 8899999999988874 4688888888887777663 3445
Q ss_pred HHHhccCC------CCCHhHHHHHHHHHH----hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHH
Q 040435 963 FKVFSEMP------QKNKVSWNSALSGLV----VNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVH 1032 (1991)
Q Consensus 963 ~~lf~~m~------~~dv~s~n~LI~a~~----~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~ 1032 (1991)
..+|+... ..+...|...+.-+. .+++.+.+..+|++.......--...|..... +....+...+..+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHH
Confidence 55555432 235677877776543 24567788888888876321111111111111 11111111111111
Q ss_pred HHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC----CchhhhhHHHHhhhhcCC-------hHHHHHHHHHH
Q 040435 1033 CVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK----PDVVLWSTMIAGFTLCGR-------PREAIAVFQEM 1101 (1991)
Q Consensus 1033 ~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~----~d~~syn~LI~~y~~~g~-------~eeAl~lf~~M 1101 (1991)
. -+. +.+..|+.+++.+.. .+...|...+.--..++. .+.+..+|+++
T Consensus 147 ~-------------------~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 G-------------------DTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp H-------------------HHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred H-------------------HHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1 111 122233333332221 233456555443222211 23466778877
Q ss_pred HHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHH-HHHHHhcc--------
Q 040435 1102 NQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEAS-RKAFDQIS-------- 1172 (1991)
Q Consensus 1102 ~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A-~~lf~~m~-------- 1172 (1991)
.... .-+...+...+.-+...|+.+.|+.+++.+++. +.+..++- .|+.....++. ..+.+...
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~ 278 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAE 278 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC--------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhh
Confidence 7642 334555555566667778888888888888887 43433332 23332111111 11111110
Q ss_pred ----CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC
Q 040435 1173 ----RKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLS--VLSACSHGGLVEEGLSFFNSMVQDHGVEPA 1246 (1991)
Q Consensus 1173 ----~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~--LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~ 1246 (1991)
......|-..+..+.+.+..+.|..+|++. ... ..+...|.. .+.. ...++.+.|..+|+..++.++- +
T Consensus 279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~-~~~~d~~~ar~ife~al~~~~~--~ 353 (493)
T 2uy1_A 279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY-YATGSRATPYNIFSSGLLKHPD--S 353 (493)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH-HHHCCSHHHHHHHHHHHHHCTT--C
T ss_pred hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH-HHCCChHHHHHHHHHHHHHCCC--C
Confidence 011245777777777778899999999988 321 223444432 2221 1234689999999988876432 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
...+...++...+.|+.+.|..+++++.. ....|...+.--..+|+.+.+..++++.++
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44566678888888999999999999852 567888888888888998888888888765
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.09 E-value=1.2e-05 Score=86.28 Aligned_cols=100 Identities=6% Similarity=-0.091 Sum_probs=81.9
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHH
Q 040435 1242 GVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1242 gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvl 1320 (1991)
.+.|+ ...+..+...+.+.|++++|.+.|+++....+.+...|..|..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35563 56677788888888888888888888876555678888888888888899999999999999999988888888
Q ss_pred HHHHHHhCCCchhHHHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~~m 1341 (1991)
++.+|...|++++|....+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 899999999988888765543
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.07 E-value=3.7e-05 Score=77.96 Aligned_cols=118 Identities=13% Similarity=-0.004 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..+...+...|++++|.+.++...+. .| +...+..+...+...|++++|.+.+++.....+.+..+|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 345566666777788888888888877653 34 56777888888888889999888888876644556888999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCc
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLW 1331 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~ 1331 (1991)
.+...|+.+.|...+++++++.|+++..+..++.+|...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.04 E-value=4.8e-05 Score=85.39 Aligned_cols=127 Identities=13% Similarity=0.000 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|.+.+++.....+.+..+|..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445566778999999999999876 46788999999999999999999999999987655667899999999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCc----------------hHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1293 SYGNTELGAGATSRILELEAQNS----------------AGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~----------------~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
..|+++.|...+++++++.|.+. ..+..++.+|...|++++|........+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999999888877 88999999999999999999877655443
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.00 E-value=0.00011 Score=83.90 Aligned_cols=185 Identities=12% Similarity=0.024 Sum_probs=125.5
Q ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHhcccc--chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CCH----hHHHHH
Q 040435 1111 ITIINLLEACSVATELSSSKWAHGIAIRRCLAE--EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KNI----VSWSAM 1182 (1991)
Q Consensus 1111 ~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~--d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d~----~s~n~L 1182 (1991)
..+..+...+...|+++.|...+..+++..... ....+..+...|.+.|++++|...|+++.+ |+. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 344455667888999999999999999864322 235677788999999999999999999864 432 244445
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC
Q 040435 1183 VAAYGM------------------NGLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGLVEEGLSFFNSMVQDHGV 1243 (1991)
Q Consensus 1183 I~ay~~------------------~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi 1243 (1991)
..+|.. .|+.++|+..|+++.+. .|+.. ...... . ...+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHH------
Confidence 555544 34566666666666543 23322 111100 0 00000000
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1244 EPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1244 ~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
......+...|.+.|++++|...++++.+..+.+. .++..+..++...|+.+.|...++++.+..|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01223567788999999999999999877443343 57888999999999999999999999999887643
No 119
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.99 E-value=3.4e-05 Score=78.85 Aligned_cols=118 Identities=10% Similarity=0.061 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|.++++..++ ..| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 344566666677777777777777777654 344 4667777777888888888888888877664455778898999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCC
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGL 1330 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~ 1330 (1991)
.++...|+.+.|...++++++++|.+...+..++.+|...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988887664
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.98 E-value=5.8e-05 Score=82.61 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=121.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHh
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSA-CSH 1223 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~a-c~~ 1223 (1991)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 34456678889999999999998875 46788999999999999999999999998653 3444333222111 122
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC---CHHHHHHHHHHHHHcCChhH
Q 040435 1224 GGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA---TASAWGALLSACRSYGNTEL 1299 (1991)
Q Consensus 1224 ~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p---d~~~~~~Ll~a~~~~g~~e~ 1299 (1991)
.+...+|.+.++..++ ..| +...+..+..+|.+.|++++|.+.++++.+. .| +...|..|...+...|+.++
T Consensus 87 ~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 87 QAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV-NLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CcccChHHHHHHHHHHHHHhCCCCc
Confidence 2233357888888876 567 4788999999999999999999999998764 33 35689999999999999999
Q ss_pred HHHHHHHHHh
Q 040435 1300 GAGATSRILE 1309 (1991)
Q Consensus 1300 A~~~~e~lle 1309 (1991)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.98 E-value=0.0009 Score=80.22 Aligned_cols=160 Identities=11% Similarity=0.015 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 040435 1159 GAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAH--EALALVAEMKLGGLQPNAVTTLSVLSACSHGGL------V 1227 (1991)
Q Consensus 1159 G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~--eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~------~ 1227 (1991)
+++++++.+++.+.+ ++..+|+--.-.+.+.|.++ ++++.+++|.+... -|...|+.-.....+.|. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 567777777776654 46667777666667777766 77777777776542 245555554444555554 7
Q ss_pred HHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCH-HHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGEL-DIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~-eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
++++++++.++. ..| +...|+-+-.++.+.|+. +++.++.++..+.. +.+..++..|..++...|+.++|.+
T Consensus 203 ~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 777777777765 345 466677777777777763 33555666654321 3466777777777777777777777
Q ss_pred HHHHHHh-cCCCCchHHHHHH
Q 040435 1303 ATSRILE-LEAQNSAGYLLAS 1322 (1991)
Q Consensus 1303 ~~e~lle-l~P~~~~~yvlL~ 1322 (1991)
+++++.+ ++|.....+...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 7777775 6777666555443
No 122
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.97 E-value=1.5e-05 Score=84.97 Aligned_cols=93 Identities=12% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|...+++.....+.+...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34455555566666666666666666554334455666666666666666666666666666666666666666666666
Q ss_pred hCCCchhHHHHHH
Q 040435 1327 AGGLWVESSGTRL 1339 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~ 1339 (1991)
..|++++|.....
T Consensus 101 ~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 101 QXGELAEAESGLF 113 (148)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 6666666665443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.97 E-value=8.9e-05 Score=79.10 Aligned_cols=125 Identities=6% Similarity=0.024 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|...|+..++ ..| +...+..+..++.+.|++++|.+.+++.....+.+..+|..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 355555666777888888888877765 344 4677778888888888888888888887664455778888888899
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHH--HHHHHhCCCchhHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLA--SSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL--~~lya~~G~~~ea~~vr~~ 1340 (1991)
...|+.+.|...+++++++.|.++..+..+ +..+...|++++|......
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999988877555 4447888999998876553
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.97 E-value=3e-05 Score=80.27 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=90.1
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1243 VEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1243 i~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
+.|+ ...+......|.+.|++++|++.|++..+..+.+..+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 6675 467888899999999999999999998875567899999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHH
Q 040435 1322 SSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m 1341 (1991)
+.+|...|++++|....+..
T Consensus 88 g~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999876543
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.96 E-value=7.2e-05 Score=89.14 Aligned_cols=162 Identities=10% Similarity=-0.014 Sum_probs=122.8
Q ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 040435 1143 EEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVL- 1218 (1991)
Q Consensus 1143 ~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL- 1218 (1991)
.+......+...+.+.|++++|...|++..+ | +...+..+...|.+.|++++|+..+++.... .|+........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3444455666777788899999998887753 3 5678888888899999999999999887653 46554332222
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--HHHHHHHHHHHHHcC
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT--ASAWGALLSACRSYG 1295 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--~~~~~~Ll~a~~~~g 1295 (1991)
..+...+..++|.+.+++.++ ..| +...+..+..+|.+.|++++|.+.++++....+.+ ...+..|+..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 235566777788888888776 456 47788889999999999999999999887632323 678999999999999
Q ss_pred ChhHHHHHHHHHHh
Q 040435 1296 NTELGAGATSRILE 1309 (1991)
Q Consensus 1296 ~~e~A~~~~e~lle 1309 (1991)
+.+.|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999988888764
No 126
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.96 E-value=0.00042 Score=83.06 Aligned_cols=193 Identities=13% Similarity=0.107 Sum_probs=152.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhccC---CCHhHHHHHHHHH----HHc---CCHHHHHHHHHHHHHCCCCCCHHHH
Q 040435 1147 VGTAVVDMYAKCG--AIEASRKAFDQISR---KNIVSWSAMVAAY----GMN---GLAHEALALVAEMKLGGLQPNAVTT 1214 (1991)
Q Consensus 1147 v~naLI~~y~k~G--~~e~A~~lf~~m~~---~d~~s~n~LI~ay----~~~---G~~~eAl~lf~eM~~~Gi~Pd~~T~ 1214 (1991)
+++.--..+...| +++++++.++.+.. ++..+|+.--..+ ... +++++++++++++.+.. +-|...|
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW 147 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW 147 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3444444445556 88999999988764 3556777765555 555 78999999999999854 3367778
Q ss_pred HHHHHHHHhcCCHH--HHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHCccCCCCCHHHHH
Q 040435 1215 LSVLSACSHGGLVE--EGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE------LDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e--~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~------~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
..-.....+.|..+ +++++++.+++ ..| +-..|+....++.+.|+ +++++++++++....+-|..+|+
T Consensus 148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~ 224 (306)
T 3dra_A 148 SYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWN 224 (306)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHH
Confidence 77777778888888 99999999987 355 56677777777777777 99999999998876677999999
Q ss_pred HHHHHHHHcCC-hhHHHHHHHHHHhcC---CCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1286 ALLSACRSYGN-TELGAGATSRILELE---AQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1286 ~Ll~a~~~~g~-~e~A~~~~e~llel~---P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
-+...+...|+ .+.....++++++++ |.++.+...++.+|...|+.++|.++...+.+
T Consensus 225 y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 225 YLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999887 455667888888877 88889999999999999999999998887764
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.95 E-value=0.00024 Score=80.47 Aligned_cols=160 Identities=10% Similarity=-0.019 Sum_probs=86.8
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhHHhcCCCCCHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGG----LVEEGLSFFNSMVQDHGVEPALEHY 1250 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G----~~e~A~~i~~~M~~~~gi~P~~~~y 1250 (1991)
+..++..|...|...+++++|+++|++..+.| +...+..|-..+.. | +.++|.++|+...+. -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHHH
Confidence 44555555555555566666666666655543 33444444444444 4 566666666655331 134455
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHCccCCCCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1251 SCMVDMLAR----AGELDIAIDLINQMPDNLKAT---ASAWGALLSACRS----YGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1251 ~~Li~~l~r----~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
..|..+|.. .+++++|.+++++..+. .+. +.++..|...|.. .++.++|...++++.++ |.++.++.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 555555554 55666666666665542 221 4566666666655 55666666666666666 44555566
Q ss_pred HHHHHHHhC-C-----CchhHHHHHHHHHHc
Q 040435 1320 LASSMYAAG-G-----LWVESSGTRLLAKER 1344 (1991)
Q Consensus 1320 lL~~lya~~-G-----~~~ea~~vr~~m~~~ 1344 (1991)
.|+.+|... | +.++|....+.-.+.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666543 2 555555554443333
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.93 E-value=4.4e-05 Score=86.24 Aligned_cols=155 Identities=8% Similarity=-0.023 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHHHhcCCHHHHHHHHHHhHHhc
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAV-TTLS----------------VLSACSHGGLVEEGLSFFNSMVQDH 1241 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~----------------LL~ac~~~G~~e~A~~i~~~M~~~~ 1241 (1991)
+-.....+...|++++|+..|++..+. .|+.. .+.. +..++...|++++|...|+..++
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 334455677888888888888888763 45433 3444 45555666666666666666654
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCC--hhHHHHHHHHHHhcCCCCchHH
Q 040435 1242 GVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGN--TELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1242 gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~--~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+.| +...+..+..+|.+.|++++|.+.+++..+..+.+..+|..|...+...|+ .+.+...+++++...|.. ..+
T Consensus 83 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred -HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 344 355566666666666666666666666555334455566666665544432 233344444443322211 123
Q ss_pred HHHHHHHHhCCCchhHHHHHH
Q 040435 1319 LLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1319 vlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..++..+...|++++|.....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 445555555666666555443
No 129
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.93 E-value=8.4e-05 Score=89.37 Aligned_cols=221 Identities=9% Similarity=-0.021 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHH
Q 040435 1088 CGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKA 1167 (1991)
Q Consensus 1088 ~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~l 1167 (1991)
.|++++|.+++++..+..- .. + +...++++.|...+.. ....|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHHHH
Confidence 5678889998887765311 10 0 1113566666555543 34567788999999888
Q ss_pred HHhccC-----CC----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 040435 1168 FDQISR-----KN----IVSWSAMVAAYGMNGLAHEALALVAEMKLGG---LQPN--AVTTLSVLSACSHGGLVEEGLSF 1233 (1991)
Q Consensus 1168 f~~m~~-----~d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~G---i~Pd--~~T~~~LL~ac~~~G~~e~A~~i 1233 (1991)
|.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+.- -.|. ..++..+...+.. |++++|+++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887653 11 3578888899999999999999998875421 1122 3467777778877 999999999
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC--CC-HHHHHHHHHHHHHcCChhHHHHH
Q 040435 1234 FNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK--AT-ASAWGALLSACRSYGNTELGAGA 1303 (1991)
Q Consensus 1234 ~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~--pd-~~~~~~Ll~a~~~~g~~e~A~~~ 1303 (1991)
|++.++.+.-..+ ...+..+..+|.+.|++++|.+.+++.... .. +. ...|..++..+...|+.+.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988763211111 467888999999999999999999987642 11 11 23666777777888999999999
Q ss_pred HHHHHhcCCCCchH-----HHHHHHHHHhCCCchhHHH
Q 040435 1304 TSRILELEAQNSAG-----YLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1304 ~e~llel~P~~~~~-----yvlL~~lya~~G~~~ea~~ 1336 (1991)
+++++ +.|..... ...++..| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99975432 23334444 4566544444
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.92 E-value=0.00034 Score=83.32 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=58.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCcc------CCCC-CHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPD------NLKA-TASAWG 1285 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~------~~~p-d~~~~~ 1285 (1991)
+...+...|++++|.+.++.+.+...-.++ ...|+.+...|.+.|++++|.+.++++.+ ...+ ...+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333334444555555555555431111111 12355555555555555555555554432 0011 123555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHHHHHHHHHhCCC-chhHHH
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQN------SAGYLLASSMYAAGGL-WVESSG 1336 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yvlL~~lya~~G~-~~ea~~ 1336 (1991)
.+...|...|++++|...+++++++.+.. +..|..++.+|...|+ +++|..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 55666666666666666666665544322 4455666666666663 355554
No 131
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.92 E-value=4.7e-05 Score=91.59 Aligned_cols=226 Identities=8% Similarity=-0.089 Sum_probs=134.7
Q ss_pred cCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1022 FVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1022 ~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
.|++++|..++....+..-. . + +...++++.|...|.+. ...|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHH
Confidence 34566666666665543211 0 1 11146677776666543 34566667777777777665
Q ss_pred HHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-------C
Q 040435 1102 NQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-------K 1174 (1991)
Q Consensus 1102 ~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-------~ 1174 (1991)
.+. +.+.++... -...++.+...|.+.|++++|...|++..+ +
T Consensus 63 l~~---------------~~~~~~~~~---------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 63 AEA---------------HANNRSLFH---------------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHH---------------HHHTTCHHH---------------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHH---------------HHHcCCHHH---------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 431 011111110 123445556666677777777666665432 1
Q ss_pred --CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-
Q 040435 1175 --NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-N----AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA- 1246 (1991)
Q Consensus 1175 --d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~- 1246 (1991)
-..+|+.+...|.. |++++|+..|++..+..... + ..++..+...+...|++++|+++|++.++...-.+.
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 191 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY 191 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 13467777778877 88999988888876421100 1 346777788888999999999999888763211111
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC------HHHHHHHHHHHHHcCChhHHHH
Q 040435 1247 ---LEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT------ASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1247 ---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd------~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
...+..++.++...|++++|...+++.. . .|+ ......++.++ ..|+.+....
T Consensus 192 ~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~-~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 192 PTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S-IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C-CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 2356667777888899999999999876 3 332 12344555555 4567655554
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.92 E-value=0.0002 Score=85.37 Aligned_cols=160 Identities=11% Similarity=-0.033 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCC--CCC--H
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNA-----VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGV--EPA--L 1247 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~-----~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi--~P~--~ 1247 (1991)
..+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|.+.++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555667778888899998888887764322111 12333445567788999999998887643211 111 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCcc---CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------C
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPD---NLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQ------N 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~---~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~------~ 1314 (1991)
..|..+...|...|++++|.+.++++.+ ..+.+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788889999999999999999988762 22222 258888999999999999999999999887543 1
Q ss_pred chHHHHHHHHHHhCCCchhH-HH
Q 040435 1315 SAGYLLASSMYAAGGLWVES-SG 1336 (1991)
Q Consensus 1315 ~~~yvlL~~lya~~G~~~ea-~~ 1336 (1991)
...|..++.+|...|++++| ..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH
Confidence 56788999999999999998 55
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.90 E-value=4.4e-05 Score=93.30 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=112.7
Q ss_pred CHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040435 1160 AIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNS 1236 (1991)
Q Consensus 1160 ~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~ 1236 (1991)
++++|...|+...+ | +...|..+...|.+.|++++|+..|++..+.. |+...+ ..+++.+.-.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~~- 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQA- 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHHH-
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHHH-
Confidence 34444444443322 2 44567777777777888888888887776632 322100 0011111110
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1237 MVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1237 M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
+ ....|..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|++++|...++++++++|+++.
T Consensus 194 ~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 L--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp H--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred H--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 0 14578888889999999999999999887755668899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCchhHHH
Q 040435 1317 GYLLASSMYAAGGLWVESSG 1336 (1991)
Q Consensus 1317 ~yvlL~~lya~~G~~~ea~~ 1336 (1991)
++..++.+|...|+++++.+
T Consensus 266 a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999854
No 134
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.89 E-value=0.00053 Score=81.56 Aligned_cols=203 Identities=8% Similarity=-0.025 Sum_probs=141.7
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchh---HHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1097 VFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVA---VGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1097 lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~---v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
.+.++......|+..++..+...+.-.- ..+.......+.. .+...+..+.+.|++++|...+++..+
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 4455544445788777766666554321 1111211122222 233347788899999999999998764
Q ss_pred C-----C----HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 040435 1174 K-----N----IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQ-PN----AVTTLSVLSACSHGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~-----d----~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~-Pd----~~T~~~LL~ac~~~G~~e~A~~i~~~M~~ 1239 (1991)
. + ...+..+...+...|++++|+..|++..+.... ++ ..+++.+..++...|++++|.++|+.+++
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 2 123334666677778999999999999874322 23 23688888999999999999999999875
Q ss_pred hcC----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCC-CHHHHHHHHHHHHHcCC-hhHHHHHHHHH
Q 040435 1240 DHG----VEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKA-TASAWGALLSACRSYGN-TELGAGATSRI 1307 (1991)
Q Consensus 1240 ~~g----i~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~p-d~~~~~~Ll~a~~~~g~-~e~A~~~~e~l 1307 (1991)
... ..+. ...|..+...|.+.|++++|.+.+++..+. ..+ -..+|..+..++...|+ .+.|...++++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 321 1222 347889999999999999999999987641 111 26789999999999995 69999999887
Q ss_pred H
Q 040435 1308 L 1308 (1991)
Q Consensus 1308 l 1308 (1991)
+
T Consensus 264 l 264 (293)
T 3u3w_A 264 S 264 (293)
T ss_dssp H
T ss_pred H
Confidence 5
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.80 E-value=0.00025 Score=70.40 Aligned_cols=111 Identities=14% Similarity=0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
..+..+...+...|++++|.+.++...+. .| +...+..+...+.+.|++++|.+.+++..+..+.+...|..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666667777777777777777653 34 466777777888888888888888887765445567788888888
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...|+.+.|...++++++++|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88889999999999999999998888777776654
No 136
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=0.00022 Score=74.37 Aligned_cols=115 Identities=10% Similarity=-0.029 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWG 1285 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~ 1285 (1991)
+...+..+...+...|++++|.++|+..++ +.|+ ...|..+...|.+.|++++|.+.+++.....+.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555556666666777777776666643 4555 456777777788888888888888777654445678888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1286 ALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1286 ~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
.+..++...|+.+.|...++++++++|+++..+..+..+...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888899999999999999999999999988877777766544
No 137
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.80 E-value=0.026 Score=72.36 Aligned_cols=200 Identities=12% Similarity=-0.000 Sum_probs=93.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHH-HHHHHhc
Q 040435 992 EALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELA-WKLFNDV 1070 (1991)
Q Consensus 992 eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A-~~lf~~m 1070 (1991)
.+..+|+++.... .-+...|...+.-+...|+.+.|..+++.+++. +.+...+. .|+...+.++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 4556666665432 223445555555556667777777777777776 33322222 22222111111 1111111
Q ss_pred C------------CCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhhccChHHHHHHHHHH
Q 040435 1071 K------------KPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITII--NLLEACSVATELSSSKWAHGIA 1136 (1991)
Q Consensus 1071 ~------------~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~--~lL~a~a~~g~le~a~~i~~~~ 1136 (1991)
. ......|-..+..+.+.+..+.|..+|.+. +.. ..+...|. +.+... ..++.+.|+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFSSG 346 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHHHH
Confidence 0 001133444444444555566666666665 211 11222222 111111 122456666666666
Q ss_pred HHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040435 1137 IRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMK 1203 (1991)
Q Consensus 1137 ~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~ 1203 (1991)
++.. +.+...+...++...+.|+.+.|+.+|+.+. .....|...+.--..+|+.+.+.++++++.
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5543 2223334445555556666666666666653 234555555555555566555555555554
No 138
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.79 E-value=0.00057 Score=77.28 Aligned_cols=173 Identities=6% Similarity=-0.097 Sum_probs=133.1
Q ss_pred HHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCHhHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Q 040435 1130 KWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR-KNIVSWSAMVAAYGMNG----LAHEALALVAEMKL 1204 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~~G----~~~eAl~lf~eM~~ 1204 (1991)
.+.+....+.| +...+..|..+|...+++++|...|++..+ .+...+..|...|.. + +.++|+++|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 556667777888888999999999988765 466778888887777 6 89999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHH----cCCHHHHHHHHHHC
Q 040435 1205 GGLQPNAVTTLSVLSACSH----GGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLAR----AGELDIAIDLINQM 1273 (1991)
Q Consensus 1205 ~Gi~Pd~~T~~~LL~ac~~----~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r----~G~~eeA~~l~~~m 1273 (1991)
.| +...+..|-..+.. .+++++|.++|+...+ ..|. ...+..|..+|.. .+++++|.+++++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 56667777777766 7899999999998754 4453 6788889999988 88999999999998
Q ss_pred ccCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhcCCC
Q 040435 1274 PDNLKATASAWGALLSACRSY-G-----NTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1274 ~~~~~pd~~~~~~Ll~a~~~~-g-----~~e~A~~~~e~llel~P~ 1313 (1991)
.+. ..+...+..|...|... | |.++|...++++.+.+..
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 763 34666788888887653 3 899999999999888653
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.78 E-value=0.0001 Score=80.28 Aligned_cols=131 Identities=11% Similarity=0.028 Sum_probs=101.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHH-HHHcCCH-
Q 040435 1187 GMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDM-LARAGEL- 1263 (1991)
Q Consensus 1187 ~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~-l~r~G~~- 1263 (1991)
...|++++|+..+++..+.. +.+...+..+...+...|++++|..+|+...+ +.| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCCcc
Confidence 45677888888888877643 34567788888888889999999999988876 344 56677788888 7788998
Q ss_pred -HHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1264 -DIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1264 -eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
++|...++++....+.+..+|..+...+...|+.+.|...+++++++.|+++....++
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 9999999988765455788899999999999999999999999999999887654433
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.76 E-value=0.00011 Score=77.31 Aligned_cols=89 Identities=13% Similarity=-0.084 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCC
Q 040435 1250 YSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGG 1329 (1991)
Q Consensus 1250 y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G 1329 (1991)
+..+...+.+.|++++|.+.+++.....+.+...|..+..++...|+++.|...++++++++|+++..+..++.+|...|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 33344444445555555555544443223344445555555555555555555555555555555555555555555555
Q ss_pred CchhHHHHH
Q 040435 1330 LWVESSGTR 1338 (1991)
Q Consensus 1330 ~~~ea~~vr 1338 (1991)
++++|....
T Consensus 101 ~~~~A~~~~ 109 (142)
T 2xcb_A 101 DLDGAESGF 109 (142)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555544433
No 141
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.76 E-value=6.6e-05 Score=79.97 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1212 VTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1212 ~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
..+..+...+...|++++|...|+..++ +.| +...|..+..+|.+.|++++|.+.++++....+.+...|..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 3456666777888999999999988876 455 577788888899999999999999998876445577899999999
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1291 CRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1291 ~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
+...|+.++|...+++++++.|+++....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99999999999999999999998877543
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.74 E-value=0.00018 Score=77.47 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1211 AVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1211 ~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
...+..+...+...|++++|.++|+..++ +.| +...|..+..+|.+.|++++|++.+++..+..+.+..+|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44566677778888888888888888876 455 57788888999999999999999999887755567889999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
++...|+++.|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665543
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.74 E-value=0.00047 Score=82.04 Aligned_cols=164 Identities=8% Similarity=-0.036 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--C-C------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR--K-N------IVSWSAMVAAYGMNGLAHEALALVAEMKLGGL---QPN--AV 1212 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi---~Pd--~~ 1212 (1991)
.+...+..|...|++++|.+.+.+..+ + . ...+..+...|...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567788899999999999876543 1 1 12344455667778899999999999875321 122 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----C-CCCH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-----LEHYSCMVDMLARAGELDIAIDLINQMPDN-----L-KATA 1281 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~-~pd~ 1281 (1991)
+++.+...|...|++++|.+++++..+.....|+ ...|..+...|.+.|++++|.+.+++..+. . ..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999999988743222333 258888999999999999999999887541 1 1126
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHhc
Q 040435 1282 SAWGALLSACRSYGNTELG-AGATSRILEL 1310 (1991)
Q Consensus 1282 ~~~~~Ll~a~~~~g~~e~A-~~~~e~llel 1310 (1991)
.+|..+...+...|+.+.| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 7889999999999999999 7778888764
No 144
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.74 E-value=9e-05 Score=80.78 Aligned_cols=119 Identities=10% Similarity=0.083 Sum_probs=100.4
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH-HHHcCCh--
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA-CRSYGNT-- 1297 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a-~~~~g~~-- 1297 (1991)
...|++++|.+.++..++. .| +...|..+..+|...|++++|.+.++++....+.+...|..+..+ +...|+.
T Consensus 21 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3568889999999988763 45 578899999999999999999999999876445578899999988 7889998
Q ss_pred hHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1298 ELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
+.|...++++++++|+++..+..++.+|...|++++|........+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987765543
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.72 E-value=6.5e-05 Score=89.29 Aligned_cols=188 Identities=7% Similarity=-0.078 Sum_probs=130.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 040435 1145 VAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSAC 1221 (1991)
Q Consensus 1145 ~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac 1221 (1991)
...+..+...|.+.|++++|...|++..+ | +...|..+...|.+.|++++|+..+++..+.. +-+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34556677788899999999999998764 4 67889999999999999999999999988743 23566788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH
Q 040435 1222 SHGGLVEEGLSFFNSMVQDHGVEPAL-EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG 1300 (1991)
Q Consensus 1222 ~~~G~~e~A~~i~~~M~~~~gi~P~~-~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A 1300 (1991)
...|++++|.+.|+...+ +.|+. ..+..++....+.++...... .... ..+.+..+...+ ..+. .|+.+.|
T Consensus 83 ~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEER--RIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHT--CCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHH--HHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999998865 33321 111122222222222122222 2222 234455555444 3333 6899999
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhC-CCchhHHHHHHHH
Q 040435 1301 AGATSRILELEAQNSAGYLLASSMYAAG-GLWVESSGTRLLA 1341 (1991)
Q Consensus 1301 ~~~~e~llel~P~~~~~yvlL~~lya~~-G~~~ea~~vr~~m 1341 (1991)
.+.++++++++|++......+..++... ++++++.++....
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887777777777776 6777777766543
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.71 E-value=0.0001 Score=79.00 Aligned_cols=100 Identities=10% Similarity=-0.015 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ +.| +...|..+..+|.+.|++++|.+.++++....+.++..|..+..++
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 455555666677777777777777765 455 4667777777777888888888887777664455677888888888
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCc
Q 040435 1292 RSYGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
...|+.++|...+++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888654
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00032 Score=71.64 Aligned_cols=110 Identities=11% Similarity=-0.049 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ +.| +...|..+..+|.+.|++++|.+.+++..+..+.+..+|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 445555666677777777777777665 344 4567777777777778888887777777654445677788888888
Q ss_pred HHcCChhHHHHHHHHHHhcC------CCCchHHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELE------AQNSAGYLLASSMY 1325 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~------P~~~~~yvlL~~ly 1325 (1991)
...|++++|...++++++++ |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888888 77766666655543
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.0002 Score=73.21 Aligned_cols=95 Identities=11% Similarity=0.005 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35677788899999999999999999877556688999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHH
Q 040435 1327 AGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~~m 1341 (1991)
..|++++|.......
T Consensus 84 ~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 84 AVKEYASALETLDAA 98 (126)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHH
Confidence 999999999866543
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.66 E-value=0.00024 Score=74.67 Aligned_cols=109 Identities=9% Similarity=-0.031 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
.+..+...+...|++++|.+.|+..++ ..| +...|..+..+|.+.|++++|...+++.....+.+...|..+..++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 445555677788889999988888876 455 5677888888899999999999999988765556778899999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1292 RSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1292 ~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
...|+.+.|...+++++++.|+++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888766554433
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.65 E-value=0.00074 Score=67.51 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=77.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|..+...+...|++++|+++|+++.+.. +.+..++..+...+...|++++|..+++.+.+. ...+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4566667777777777777777777776542 234566667777777777888888777777653 1224667777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
+|.+.|++++|.+.++++.+..+.+...+..+...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 78888888888888777765334455566555555443
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.65 E-value=0.00011 Score=75.17 Aligned_cols=93 Identities=10% Similarity=-0.105 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.+..+...+.+.|++++|...++++.+..+.+...|..|..++...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35566778889999999999999887755668889999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHH
Q 040435 1329 GLWVESSGTRLLA 1341 (1991)
Q Consensus 1329 G~~~ea~~vr~~m 1341 (1991)
|++++|.......
T Consensus 99 g~~~~A~~~~~~a 111 (121)
T 1hxi_A 99 HNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999988766543
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.62 E-value=0.0008 Score=71.52 Aligned_cols=129 Identities=9% Similarity=-0.090 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.++..++. .| +...|..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 456666677777777888887777776642 235666677777777788888888888777653 34 4667777777
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH--HHHcCChhHHHHHHHHHHh
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSA--CRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a--~~~~g~~e~A~~~~e~lle 1309 (1991)
++.+.|++++|.+.++++.+..+.+...|..+..+ +...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888877765434455556443333 6667778888777776654
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.61 E-value=0.00035 Score=77.80 Aligned_cols=165 Identities=10% Similarity=-0.092 Sum_probs=108.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 040435 1150 AVVDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL 1226 (1991)
Q Consensus 1150 aLI~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~ 1226 (1991)
..+.+....|+++.|.+.++.-.. .....|..+...+...|++++|+..|++..+.. |+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------h
Confidence 344445555777777777764432 234567777777888888888888888877632 221100000 0
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 040435 1227 VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSR 1306 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ 1306 (1991)
.+.- ...+ ....|..+..+|.+.|++++|...+++.....+.+..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~---~~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDK---KKNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHH---HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH---HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 0000 0000 1356777888888999999999999888765556788999999999999999999999999
Q ss_pred HHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1307 ILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1307 llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+++++|+++..+..++.++...|+.+++.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877766
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.61 E-value=0.00034 Score=72.18 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|...|+..++ +.| +...|..+..+|.+.|++++|...+++.....+.+...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 344555555555555556666555555544 223 2445555555555555555555555555443333455555555
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
.++...|+++.|...+++++++.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 5555555555555555555555554
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.60 E-value=0.00018 Score=70.74 Aligned_cols=95 Identities=16% Similarity=0.056 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--CchHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQ--NSAGYLLASSM 1324 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~~~yvlL~~l 1324 (1991)
...+..+...+.+.|++++|...++++.+..+.+..+|..+...+...|++++|...+++++++.|. ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3445556666677777777777777665534446667777777777777777777777777777777 77777777777
Q ss_pred HHhC-CCchhHHHHHHHH
Q 040435 1325 YAAG-GLWVESSGTRLLA 1341 (1991)
Q Consensus 1325 ya~~-G~~~ea~~vr~~m 1341 (1991)
|... |++++|.......
T Consensus 86 ~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HTTCSSCSHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 7777 7777777655544
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.56 E-value=0.00034 Score=75.28 Aligned_cols=97 Identities=12% Similarity=-0.017 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|++++|+..++++++++|+++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35678888999999999999999999988755668899999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~ 1342 (1991)
...|++++|........
T Consensus 90 ~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGI 106 (164)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHH
Confidence 99999999998766443
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.55 E-value=0.00039 Score=68.91 Aligned_cols=97 Identities=10% Similarity=0.047 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++.....+.+...|..+...+...|+++.|...+++++++.|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677888999999999999999999876555688999999999999999999999999999999999999999999999
Q ss_pred hCCCchhHHHHHHHHHH
Q 040435 1327 AGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1327 ~~G~~~ea~~vr~~m~~ 1343 (1991)
..|++++|........+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999987765443
No 158
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.54 E-value=0.001 Score=67.11 Aligned_cols=119 Identities=12% Similarity=-0.074 Sum_probs=86.9
Q ss_pred CHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 040435 1175 NIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCM 1253 (1991)
Q Consensus 1175 d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~L 1253 (1991)
+...|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.++++...+. .| +...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHH
Confidence 34566677777778888888888888877642 235666777777778888888888888877653 44 46677788
Q ss_pred HHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1254 VDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1254 i~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
..++.+.|++++|.+.+++..+..+.+...|..+..++...|+.
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888877654445677777777777776654
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.54 E-value=0.00052 Score=70.75 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|...+++.....+.+..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 35556666666666666666666666655433445666666666666666666666666666666666666666666666
Q ss_pred HhCCCchhHHHHHH
Q 040435 1326 AAGGLWVESSGTRL 1339 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~ 1339 (1991)
...|++++|.....
T Consensus 88 ~~~~~~~~A~~~~~ 101 (137)
T 3q49_B 88 LEMESYDEAIANLQ 101 (137)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 66666666665443
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.0019 Score=84.44 Aligned_cols=172 Identities=7% Similarity=-0.047 Sum_probs=143.8
Q ss_pred cCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 040435 1158 CGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL----------AHEALALVAEMKLGGLQPNAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~----------~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~ 1224 (1991)
...-++|.+.++.+.+ .+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-..++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3445778899988875 356788887777777777 999999999999854 33666788777788889
Q ss_pred C--CHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc------
Q 040435 1225 G--LVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAG-ELDIAIDLINQMPDNLKATASAWGALLSACRSY------ 1294 (1991)
Q Consensus 1225 G--~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G-~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~------ 1294 (1991)
| ++++++++++++++ +.| +...|+....++.+.| .+++|.++++++.+..+-|..+|......+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999987 456 5777888888889999 899999999999887777999999999988773
Q ss_pred --------CChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchh
Q 040435 1295 --------GNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVE 1333 (1991)
Q Consensus 1295 --------g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~e 1333 (1991)
+.++++.+.++++++++|++.++|..+..++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999988554
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.52 E-value=0.00077 Score=74.45 Aligned_cols=155 Identities=12% Similarity=-0.038 Sum_probs=97.4
Q ss_pred hcCCHHHHHH---HHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHH
Q 040435 1157 KCGAIEASRK---AFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKL----GGLQP-NAVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1157 k~G~~e~A~~---lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi~P-d~~T~~~LL~ac~~~G~~e 1228 (1991)
..|++++|.+ .+..-.......+..+...|...|++++|+..+++... .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 44332223456777777778888888888888877664 12112 2335666666777888888
Q ss_pred HHHHHHHHhHHhcCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC--CCCC----HHHHHHHHHHHHHcCCh
Q 040435 1229 EGLSFFNSMVQDHGVEP-A----LEHYSCMVDMLARAGELDIAIDLINQMPDN--LKAT----ASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P-~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~--~~pd----~~~~~~Ll~a~~~~g~~ 1297 (1991)
+|.+++++..+...-.+ + ...+..+..++.+.|++++|.+.+++.... ...+ ..++..+...+...|+.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877655322122 1 345667777788888888888877766431 0111 23456677777778888
Q ss_pred hHHHHHHHHHHhcC
Q 040435 1298 ELGAGATSRILELE 1311 (1991)
Q Consensus 1298 e~A~~~~e~llel~ 1311 (1991)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.52 E-value=0.00029 Score=82.89 Aligned_cols=138 Identities=9% Similarity=-0.058 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHH
Q 040435 1180 SAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDML 1257 (1991)
Q Consensus 1180 n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l 1257 (1991)
-.....|...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...+. -.|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 34556677788888888888877653 365544444445677888888888888755321 0121 23567778888
Q ss_pred HHcCCHHHHHHHHHHCccCCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLK-A--TASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLAS 1322 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~-p--d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~ 1322 (1991)
.+.|++++|++.+++...... | ....+..+..+++..|+.++|...++++++.+|+ +.....|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 999999999999998864321 4 3347788888889999999999999999999998 66665554
No 163
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.51 E-value=0.00077 Score=74.45 Aligned_cols=153 Identities=10% Similarity=-0.022 Sum_probs=112.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhc---CCCC-CHHHHHHHHHHHHHcC
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDH---GVEP-ALEHYSCMVDMLARAG 1261 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~---gi~P-~~~~y~~Li~~l~r~G 1261 (1991)
+...|++++|.++++.+.. ........+..+...+...|++++|..++++..+.. +..| ....+..+...|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3467999999996655543 222345678888888999999999999999886632 2222 2467888999999999
Q ss_pred CHHHHHHHHHHCccC---CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC--Cc----hHHHHHHHHHHhC
Q 040435 1262 ELDIAIDLINQMPDN---LKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQ--NS----AGYLLASSMYAAG 1328 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~~---~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~--~~----~~yvlL~~lya~~ 1328 (1991)
++++|.+.+++.... ...+ ..++..+...+...|+++.|...+++++++.+. ++ ..+..++.+|...
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 999999999887542 2212 456888888999999999999999999876432 22 2357889999999
Q ss_pred CCchhHHHHHH
Q 040435 1329 GLWVESSGTRL 1339 (1991)
Q Consensus 1329 G~~~ea~~vr~ 1339 (1991)
|++++|.....
T Consensus 161 g~~~~A~~~~~ 171 (203)
T 3gw4_A 161 KNLLEAQQHWL 171 (203)
T ss_dssp TCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999987554
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.48 E-value=0.00057 Score=87.12 Aligned_cols=140 Identities=14% Similarity=0.005 Sum_probs=103.1
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
...|..+...|.+.|++++|+..|++.++. .|+...+ .-+...+ ...+ ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HHHH--------HHHHHHHHHH
Confidence 456777777777888888888888777652 1221100 0011111 0000 1457888899
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|+..++++.+..+.+..+|..+..++...|+++.|...++++++++|++..++..++.++...|+++++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877556688999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 040435 1336 GT 1337 (1991)
Q Consensus 1336 ~v 1337 (1991)
+-
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 165
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.47 E-value=0.00049 Score=70.03 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+...+..+...+.+.|++++|.+.+++.....+.+..+|..+...+...|+.++|...++++++++|.++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 36778889999999999999999999987755568899999999999999999999999999999999999999999999
Q ss_pred HhCCCchhHHHHHHHHH
Q 040435 1326 AAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1326 a~~G~~~ea~~vr~~m~ 1342 (1991)
...|++++|........
T Consensus 95 ~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 99999999998766543
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.43 E-value=0.017 Score=69.98 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=9.8
Q ss_pred hcCChHHHHHHHHHHHH
Q 040435 1087 LCGRPREAIAVFQEMNQ 1103 (1991)
Q Consensus 1087 ~~g~~eeAl~lf~~M~~ 1103 (1991)
+.+..++|++++.++..
T Consensus 66 ~~e~se~AL~lt~~~L~ 82 (349)
T 3q7a_A 66 KEEKSERALELTEIIVR 82 (349)
T ss_dssp TTCCSHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH
Confidence 34444566666666655
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.42 E-value=0.00037 Score=77.60 Aligned_cols=120 Identities=9% Similarity=-0.071 Sum_probs=58.3
Q ss_pred HHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-CH----------------h
Q 040435 1117 LEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR--K-NI----------------V 1177 (1991)
Q Consensus 1117 L~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~-d~----------------~ 1177 (1991)
.......+.++.+++.+....... ......+..+...|.+.|++++|...|++..+ | +. .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445566666666655333221 12344566778889999999999999998764 2 21 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
.|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|.+.|+..+
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44444444455555555555555444421 1223334444444444444444444444443
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.41 E-value=0.00066 Score=68.65 Aligned_cols=111 Identities=5% Similarity=-0.032 Sum_probs=67.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCC---CCC----HHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNL---KAT----ASAWGA 1286 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~---~pd----~~~~~~ 1286 (1991)
+..+...+...|++++|..+++...+. ...+...+..+..+|.+.|++++|...++++.... .++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444445555566666666666655542 11234556666666666666666666666654321 112 567777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA 1327 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~ 1327 (1991)
+..++...|+.+.|...+++++++.| ++.....+..++..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 77778888888888888888888877 45555555555443
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.40 E-value=0.001 Score=81.17 Aligned_cols=94 Identities=11% Similarity=-0.041 Sum_probs=54.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN----------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG 1205 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d----------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~ 1205 (1991)
+...+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778889999999999999999998764 32 244555555555555555555555554442
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
. +.+...+..+..++...|++++|++.|++.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 1133344444444444444444444444443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.37 E-value=0.00074 Score=66.24 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TASAWGALLS 1289 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~ 1289 (1991)
.+..+...+...|++++|...++..++. .| +...+..+..++.+.|++++|.+.++++.+..+. +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4455556667777777777777777653 33 4667777888888888888888888887764444 6788888888
Q ss_pred HHHHc-CChhHHHHHHHHHHhcCCCCc
Q 040435 1290 ACRSY-GNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1290 a~~~~-g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.+... |+.++|...++++++..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888 999999999999988888764
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.37 E-value=0.0005 Score=70.96 Aligned_cols=92 Identities=4% Similarity=-0.115 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch-------HHHH
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA-------GYLL 1320 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~-------~yvl 1320 (1991)
..+..|...+.+.|++++|++.+++..+..+.+..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 356678888999999999999999887755667889999999999999999999999999999987653 6777
Q ss_pred HHHHHHhCCCchhHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~ 1339 (1991)
++.+|...|++++|.....
T Consensus 89 lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 8999999999999987654
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.34 E-value=0.00061 Score=69.68 Aligned_cols=98 Identities=15% Similarity=0.033 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHH
Q 040435 1215 LSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRS 1293 (1991)
Q Consensus 1215 ~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~ 1293 (1991)
..+...+...|++++|...|+..++ ..| +...|..+..++.+.|++++|+..+++..+..+.+..+|..|..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3445566778888888888888876 456 567788888888888888888888888776445577888888888889
Q ss_pred cCChhHHHHHHHHHHhcCCCCc
Q 040435 1294 YGNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1294 ~g~~e~A~~~~e~llel~P~~~ 1315 (1991)
.|+.++|...++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888754
No 173
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.33 E-value=0.00079 Score=83.29 Aligned_cols=138 Identities=7% Similarity=-0.086 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 040435 1177 VSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVD 1255 (1991)
Q Consensus 1177 ~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~ 1255 (1991)
..|..+...|.+.|++++|++.|++.++. .|.. ......+ ... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHH---HHHHHHHHHHHHHHH
Confidence 45666777777777777777777776541 0100 0000111 110 1233 3567888999
Q ss_pred HHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1256 MLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1256 ~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
+|.+.|++++|++.++++.+..+.+..+|..+..++...|++++|...++++++++|++...+..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987555678999999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 040435 1336 G 1336 (1991)
Q Consensus 1336 ~ 1336 (1991)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 4
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.31 E-value=0.00047 Score=88.41 Aligned_cols=117 Identities=7% Similarity=0.041 Sum_probs=98.6
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTE 1298 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e 1298 (1991)
.+...|++++|.+.+++.++ +.| +...|..+..+|.+.|++++|.+.+++..+..+.+..+|..+..++...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 44577889999999988876 456 47888999999999999999999999988755667889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHH--HHhCCCchhHHHHHH
Q 040435 1299 LGAGATSRILELEAQNSAGYLLASSM--YAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1299 ~A~~~~e~llel~P~~~~~yvlL~~l--ya~~G~~~ea~~vr~ 1339 (1991)
+|+..++++++++|+++..+..++.+ |...|++++|.....
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999888 888899998887644
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.31 E-value=0.00075 Score=72.35 Aligned_cols=81 Identities=10% Similarity=-0.021 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCc-hHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNS-AGYLLASSMY 1325 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~-~~yvlL~~ly 1325 (1991)
...|..+..+|.+.|++++|...+++.....+.+..+|..+..++...|+++.|...++++++++|+++ .....|..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~ 142 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT 142 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 457888899999999999999999988775566788999999999999999999999999999999988 5555555544
Q ss_pred Hh
Q 040435 1326 AA 1327 (1991)
Q Consensus 1326 a~ 1327 (1991)
..
T Consensus 143 ~~ 144 (162)
T 3rkv_A 143 ER 144 (162)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 176
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.31 E-value=0.0076 Score=73.10 Aligned_cols=230 Identities=11% Similarity=0.040 Sum_probs=163.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC-CHHHHHHHH
Q 040435 1090 RPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG-AIEASRKAF 1168 (1991)
Q Consensus 1090 ~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G-~~e~A~~lf 1168 (1991)
++.+|...++.+...+.. -++|..+...++... +.+..+++.--..+...| .+++++..+
T Consensus 52 ~y~~~~~~~r~~~~~~e~------------------se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKEEK------------------SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTTCC------------------SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 456777777777665432 234556666666554 234455666666666778 599999999
Q ss_pred HhccC---CCHhHHHHHHHHHHHc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHH
Q 040435 1169 DQISR---KNIVSWSAMVAAYGMN-G-LAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVE--------EGLSFFN 1235 (1991)
Q Consensus 1169 ~~m~~---~d~~s~n~LI~ay~~~-G-~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e--------~A~~i~~ 1235 (1991)
+.+.. ++..+|+.-...+.+. + ++++++++++++.+.. +-|...|..-.....+.|..+ +++++++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 98875 4677898888777776 7 8899999999998754 336666666555555555555 8999999
Q ss_pred HhHHhcCCCC-CHHHHHHHHHHHHHcCC-------HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh----------
Q 040435 1236 SMVQDHGVEP-ALEHYSCMVDMLARAGE-------LDIAIDLINQMPDNLKATASAWGALLSACRSYGNT---------- 1297 (1991)
Q Consensus 1236 ~M~~~~gi~P-~~~~y~~Li~~l~r~G~-------~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~---------- 1297 (1991)
++++. .| +...|+....++.+.|+ +++++++++++....+-|...|.-+-+.+...|+.
T Consensus 192 k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~ 268 (349)
T 3q7a_A 192 EMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILP 268 (349)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGG
T ss_pred HHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccc
Confidence 99873 55 57778888888888876 79999999988775677999999988888877764
Q ss_pred ----------hHHHHHHHHHHhcC------CCCchHHHHHHHHHHhCCCchhHHHHHHHHH
Q 040435 1298 ----------ELGAGATSRILELE------AQNSAGYLLASSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1298 ----------e~A~~~~e~llel~------P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+.-......+.... +..+-+..+|+.+|...|+.++|.++.+.+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 269 YTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp GTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 22222222222222 4566777889999999999999999888775
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.31 E-value=0.0018 Score=65.79 Aligned_cols=105 Identities=10% Similarity=0.073 Sum_probs=75.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC---HHHHHHHHH
Q 040435 1217 VLSACSHGGLVEEGLSFFNSMVQDHGVEPA-L---EHYSCMVDMLARAGELDIAIDLINQMPDNLKAT---ASAWGALLS 1289 (1991)
Q Consensus 1217 LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~---~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd---~~~~~~Ll~ 1289 (1991)
+...+...|++++|.+.|+.+++. .|+ . ..+..+..++.+.|++++|.+.++++....+.+ ..++..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 344556777788888887777653 332 2 466677778888888888888888776533334 667888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1290 ACRSYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1290 a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
++...|+.+.|...++++++..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88888999999999999998888877655544443
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.28 E-value=0.00051 Score=88.11 Aligned_cols=190 Identities=9% Similarity=-0.018 Sum_probs=89.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGEL 1263 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~ 1263 (1991)
|.+.|++++|++.|++..+. .| +...+..+..++...|++++|.+.+++.++ +.| +...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 34455555555555555542 22 344555555555556666666666655544 344 245555555566666666
Q ss_pred HHHHHHHHHCccCCCCCHHHHHHHHHH--HHHcCChhHHHHHHH-----------HHHhcCCCCchH-----------HH
Q 040435 1264 DIAIDLINQMPDNLKATASAWGALLSA--CRSYGNTELGAGATS-----------RILELEAQNSAG-----------YL 1319 (1991)
Q Consensus 1264 eeA~~l~~~m~~~~~pd~~~~~~Ll~a--~~~~g~~e~A~~~~e-----------~llel~P~~~~~-----------yv 1319 (1991)
++|.+.++++.+..+.+..+|..+..+ +...|++++|...++ ++++++|+..+. ..
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 666666655544222233344444444 555566666666665 555555443211 11
Q ss_pred HHHHHHHhCCCchhHHH--HHHHHHHcCCcccCcEEEEEEcCeEeEEEcCCCCCCCCchhHHHHHHH
Q 040435 1320 LASSMYAAGGLWVESSG--TRLLAKERGVKVVAGNSLVHVDNKACKFIAGEKAQSHPRGSEVILLAC 1384 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~~--vr~~m~~~gi~k~~g~s~i~v~~~~~~F~~~d~~~~~p~~~~i~~~~~ 1384 (1991)
.+...+...++..+..- +....+ .-++++|....+.+......++.||. |-+..+....+.
T Consensus 171 ~lie~l~~~~~l~e~~v~~L~~~a~-eil~~e~~~~~~~~~~~~~~~vigDi---HG~~~~l~~~l~ 233 (477)
T 1wao_1 171 ELMQWYKDQKKLHRKCAYQILVQVK-EVLSKLSTLVETTLKETEKITVCGDT---HGQFYDLLNIFE 233 (477)
T ss_dssp HHHHHHHTCCCCCHHHHHHHHHHHH-HHHHTSCSEEEECCCSSCEEEEECBC---TTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHH-HHHccCCCeEEeecCCCcceEEEeCC---CCCHHHHHHHHH
Confidence 22333444555544332 221111 12334555444443333445778885 544444444433
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.28 E-value=0.00031 Score=71.02 Aligned_cols=103 Identities=11% Similarity=0.088 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
..|++++|+..|++.++...-.| +...+..+..+|.+.|++++|.+.++++.+..+.+..+|..+..++...|+.++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35777788888887764100024 35677888888888899999999888887655567888888888999999999999
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
..++++++..|+++........+.
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHH
Confidence 999999999998877554443333
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.25 E-value=0.0018 Score=76.14 Aligned_cols=183 Identities=8% Similarity=-0.066 Sum_probs=137.6
Q ss_pred hcCCHHHHHHHHHhccC--C-CHhHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--------------
Q 040435 1157 KCGAIEASRKAFDQISR--K-NIVSWSAM-------VAAYGMNGLAHEALALVAEMKLGGLQPNAV-------------- 1212 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~--~-d~~s~n~L-------I~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~-------------- 1212 (1991)
..++.+.|.+.|.++.+ | ....|..+ ...+...++..+++..+..-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57999999999999875 4 45789888 4666666666667666655443 333321
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCC--CHH
Q 040435 1213 --------TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKA--TAS 1282 (1991)
Q Consensus 1213 --------T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~p--d~~ 1282 (1991)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.......| ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123455667889999999999998754 4564336666677899999999999999977642111 134
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcC--CC-CchHHHHHHHHHHhCCCchhHHHHHHHHHHc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELE--AQ-NSAGYLLASSMYAAGGLWVESSGTRLLAKER 1344 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~--P~-~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~ 1344 (1991)
++..|..++...|+.++|+..++++.+-. |. .+...+.++.++.+.|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 78889999999999999999999998643 54 4557888999999999999999988877654
No 181
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.24 E-value=0.00051 Score=73.51 Aligned_cols=97 Identities=10% Similarity=0.086 Sum_probs=65.2
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhcCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CC
Q 040435 1219 SACSHGGLVEEGLSFFNSMVQDHGVEPA-------------LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LK 1278 (1991)
Q Consensus 1219 ~ac~~~G~~e~A~~i~~~M~~~~gi~P~-------------~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~ 1278 (1991)
..+...|++++|.+.|+..++ +.|+ ...|..+..++.+.|++++|+..+++..+. .+
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 344445555555555555543 2332 126666777777777777777777666553 33
Q ss_pred CCHHHH----HHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1279 ATASAW----GALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1279 pd~~~~----~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.+...| ..+..++...|++++|+..|+++++++|++.+.+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456688 8888888999999999999999999988876643
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.24 E-value=0.00093 Score=67.50 Aligned_cols=97 Identities=7% Similarity=0.003 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-------chHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN-------SAGYL 1319 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~-------~~~yv 1319 (1991)
...+..+...+.+.|++++|...++++....+.+..+|..+...+...|+++.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 35677888999999999999999999876556688899999999999999999999999999998877 78899
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1320 LASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
.++.+|...|++++|........+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999987765544
No 183
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.20 E-value=0.02 Score=68.98 Aligned_cols=151 Identities=15% Similarity=0.062 Sum_probs=80.0
Q ss_pred HHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 040435 1161 IEASRKAFDQISR---KNIVSWSAMVAAYGMNGL--AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGL-VEEGLSFF 1234 (1991)
Q Consensus 1161 ~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~--~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~-~e~A~~i~ 1234 (1991)
+++++.+++.+.. ++..+|+.-...+.+.|+ ++++++++++|.+.. +-|...|+.-...+.+.|. ++++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3445555554432 345555555555555552 566666666666543 2244445444444455555 46666666
Q ss_pred HHhHHhcCCCC-CHHHHHHHHHHHHHc--------------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHc-----
Q 040435 1235 NSMVQDHGVEP-ALEHYSCMVDMLARA--------------GELDIAIDLINQMPDNLKATASAWGALLSACRSY----- 1294 (1991)
Q Consensus 1235 ~~M~~~~gi~P-~~~~y~~Li~~l~r~--------------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~----- 1294 (1991)
..+++ ..| +...|+....++.+. +.++++++++++.....+-|..+|+-+-+.+...
T Consensus 169 ~~~I~---~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLIT---RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHH---HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHH---HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccc
Confidence 66654 233 344454444444443 3456666666665544445666665554444433
Q ss_pred ------CChhHHHHHHHHHHhcCCCCc
Q 040435 1295 ------GNTELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1295 ------g~~e~A~~~~e~llel~P~~~ 1315 (1991)
+.++.+...++++++++|++.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENK 272 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccc
Confidence 235566666666666666653
No 184
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.0017 Score=67.40 Aligned_cols=96 Identities=13% Similarity=0.020 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT----ASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL 1321 (1991)
+...+..+...+.+.|++++|.+.+++..+. .|+ ..+|..+..++...|+++.|...+++++++.|+++..+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL-DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 4678888999999999999999999998764 455 78899999999999999999999999999999999999999
Q ss_pred HHHHHhCCCchhHHHHHHHHH
Q 040435 1322 SSMYAAGGLWVESSGTRLLAK 1342 (1991)
Q Consensus 1322 ~~lya~~G~~~ea~~vr~~m~ 1342 (1991)
+.+|...|++++|........
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999998766443
No 185
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.16 E-value=0.002 Score=66.31 Aligned_cols=98 Identities=11% Similarity=0.121 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCC----HHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDN---LKAT----ASAW 1284 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd----~~~~ 1284 (1991)
++..+...+.+.|++++|++.|++.++ +.| +...|..+..+|.+.|++++|++.+++..+. ..++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 344455556666666666666666554 344 3455666666666666666666666655431 1111 2366
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 040435 1285 GALLSACRSYGNTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1285 ~~Ll~a~~~~g~~e~A~~~~e~llel~P~ 1313 (1991)
..+..++...|+++.|+..++++++..|+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 66777778888888888888888887774
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.15 E-value=0.0017 Score=66.01 Aligned_cols=93 Identities=14% Similarity=0.009 Sum_probs=79.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHCccCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---chHHHHHHHH
Q 040435 1251 SCMVDMLARAGELDIAIDLINQMPDNLKATA---SAWGALLSACRSYGNTELGAGATSRILELEAQN---SAGYLLASSM 1324 (1991)
Q Consensus 1251 ~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~---~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~---~~~yvlL~~l 1324 (1991)
..+...+.+.|++++|.+.++++....+.+. .+|..+..++...|+++.|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 3456778899999999999999876433344 588889999999999999999999999999999 7889999999
Q ss_pred HHhCCCchhHHHHHHHHHH
Q 040435 1325 YAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1325 ya~~G~~~ea~~vr~~m~~ 1343 (1991)
|...|++++|........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999987765443
No 187
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00064 Score=67.12 Aligned_cols=90 Identities=12% Similarity=-0.013 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC------chHHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN------SAGYL 1319 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~------~~~yv 1319 (1991)
+...+..+...+.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677788888999999999999998876556678899999999999999999999999999999998 77788
Q ss_pred HHHHHHHhCCCchhHH
Q 040435 1320 LASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1320 lL~~lya~~G~~~ea~ 1335 (1991)
.++.++...|+.+++.
T Consensus 83 ~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHhHhhhH
Confidence 8888888888777654
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.12 E-value=0.0012 Score=70.80 Aligned_cols=93 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccC------------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDN------------------LKATASAWGALLSACRSYGNTELGAGATSRILEL 1310 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~------------------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel 1310 (1991)
.+......+.+.|++++|.+.+++.... .+.+..+|..+..++...|+++.|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555556665555555554331 1223578999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHhCCCchhHHHHHHHH
Q 040435 1311 EAQNSAGYLLASSMYAAGGLWVESSGTRLLA 1341 (1991)
Q Consensus 1311 ~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m 1341 (1991)
+|+++.+|..++.+|...|++++|.......
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 9999999999999999999999999866543
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.11 E-value=0.056 Score=65.17 Aligned_cols=192 Identities=8% Similarity=-0.000 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHhccccchhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCC-HHHHHHHH
Q 040435 1126 LSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCG--AIEASRKAFDQISR---KNIVSWSAMVAAYGMNGL-AHEALALV 1199 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G--~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~-~~eAl~lf 1199 (1991)
++.+..+...++... +.+..+|+.-.-.+.+.| .++++..+++.+.+ +|-.+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555555555543 345566666666666777 48899999998875 577888888888888888 68999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHc----
Q 040435 1200 AEMKLGGLQPNAVTTLSVLSACSHG--------------GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARA---- 1260 (1991)
Q Consensus 1200 ~eM~~~Gi~Pd~~T~~~LL~ac~~~--------------G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~---- 1260 (1991)
+++.+.. .-|...|+.....+.+. +.++++++++...+. +.| |...|+-+-.++.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCcc
Confidence 9999865 23555666555544443 458899999998876 567 566776666666655
Q ss_pred -------CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH-----HcCChhHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040435 1261 -------GELDIAIDLINQMPDNLKATASAWGALLSACR-----SYGNTELGAGATSRILELEAQNSAGYLLASSM 1324 (1991)
Q Consensus 1261 -------G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~-----~~g~~e~A~~~~e~llel~P~~~~~yvlL~~l 1324 (1991)
+.++++++.++++.+. .||. .|.-+..+.. ..|..++....+.++.+++|...+.|.-|..-
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~-~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQEL-EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHH-CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhh-Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 5689999999998873 4543 5654333322 35677889999999999999988877766443
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.10 E-value=0.0017 Score=61.44 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
...+..+...+.+.|++++|.+.+++.....+.+..+|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45677788889999999999999998876445578899999999999999999999999999999999999999999887
Q ss_pred hCC
Q 040435 1327 AGG 1329 (1991)
Q Consensus 1327 ~~G 1329 (1991)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 191
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.04 E-value=0.0023 Score=75.76 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHH
Q 040435 1210 NAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALL 1288 (1991)
Q Consensus 1210 d~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll 1288 (1991)
+...+..+...+...|++++|...|+..++ ..| +...|..+..+|.+.|++++|.+.++++.+..+.+...|..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 456677788888899999999999998876 456 5788889999999999999999999998875566788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCchH
Q 040435 1289 SACRSYGNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1289 ~a~~~~g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
.++...|++++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 99999999999999999999999877543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.04 E-value=0.00091 Score=81.65 Aligned_cols=141 Identities=9% Similarity=-0.070 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDML 1257 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l 1257 (1991)
.|..+...|.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+..+|
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~~ 240 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHHH
Confidence 455555666666777777777776654 2344331 112222222222111 12455566666
Q ss_pred HHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHh-CCCchhHHH
Q 040435 1258 ARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAA-GGLWVESSG 1336 (1991)
Q Consensus 1258 ~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~-~G~~~ea~~ 1336 (1991)
.+.|++++|.+.+++..+..+.+..+|..+..++...|+++.|+..++++++++|+++..+..|..+... .+..+.+..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543344566666666666666666666666666666666666666666665333 333444433
Q ss_pred HH
Q 040435 1337 TR 1338 (1991)
Q Consensus 1337 vr 1338 (1991)
+.
T Consensus 321 ~~ 322 (338)
T 2if4_A 321 MY 322 (338)
T ss_dssp --
T ss_pred HH
Confidence 33
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.02 E-value=0.0024 Score=66.86 Aligned_cols=56 Identities=11% Similarity=0.009 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCC------CchHHHHHHHHHHhCCCchhHHHHH
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQ------NSAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~------~~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
++..+...+...|+.+.|...+++++++.+. ....+..++.+|...|++++|....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 4445555555555555555555555544211 1334555666666666666666543
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.02 E-value=0.002 Score=67.50 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CC---CCHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LK---ATAS 1282 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~---pd~~ 1282 (1991)
++..+...+...|++++|.++++...+...-.++ ...+..+...+...|++++|.+.+++..+. .. ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444444555555555555555554432111111 334555666666677777776666655321 10 1134
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P 1312 (1991)
++..+...+...|+.+.|...+++++++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 566677777788888888888888776543
No 195
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.00 E-value=0.00044 Score=69.94 Aligned_cols=82 Identities=13% Similarity=0.026 Sum_probs=69.3
Q ss_pred HcCCHHHHHHHHHHCccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHH
Q 040435 1259 RAGELDIAIDLINQMPDNL---KATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1259 r~G~~eeA~~l~~~m~~~~---~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~ 1335 (1991)
..|++++|+..+++..+.. +.+..+|..|...+...|++++|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999999987631 3456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 040435 1336 GTRLL 1340 (1991)
Q Consensus 1336 ~vr~~ 1340 (1991)
.....
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86553
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.90 E-value=0.0046 Score=79.03 Aligned_cols=125 Identities=12% Similarity=0.073 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC----CCC----CHHHHHH
Q 040435 1221 CSHGGLVEEGLSFFNSMVQDHG--VEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN----LKA----TASAWGA 1286 (1991)
Q Consensus 1221 c~~~G~~e~A~~i~~~M~~~~g--i~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~p----d~~~~~~ 1286 (1991)
+...|++++|..++++.++... +-|+ ..+++.|..+|...|++++|..+++++.+. +.| -..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456677777766666554321 1121 356777777777788888877777765431 222 2557888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh-----cCCCCchHH---HHHHHHHHhCCCchhHHHHHHHHHHcC
Q 040435 1287 LLSACRSYGNTELGAGATSRILE-----LEAQNSAGY---LLASSMYAAGGLWVESSGTRLLAKERG 1345 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~~~y---vlL~~lya~~G~~~ea~~vr~~m~~~g 1345 (1991)
|...|...|++++|+..++++++ ++|++|.+- .+|..++...|++++|+.+.+.+++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999998888877 578876554 567888999999999999888887654
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0047 Score=77.21 Aligned_cols=186 Identities=5% Similarity=-0.059 Sum_probs=129.9
Q ss_pred HHHhcCCHHHHHHHHHhccC--C---C---------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH
Q 040435 1154 MYAKCGAIEASRKAFDQISR--K---N---------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG-GLQPNAV 1212 (1991)
Q Consensus 1154 ~y~k~G~~e~A~~lf~~m~~--~---d---------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~-Gi~Pd~~ 1212 (1991)
.+.+.|++++|.+.|..+.+ + + ..++..|...|...|++++|.+++.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556778888887776642 1 0 124677888999999999999998887542 1122222
Q ss_pred H---HHHHH-HHHHhcCCHHHHHHHHHHhHHh---cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-----CCC
Q 040435 1213 T---TLSVL-SACSHGGLVEEGLSFFNSMVQD---HGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-----LKA 1279 (1991)
Q Consensus 1213 T---~~~LL-~ac~~~G~~e~A~~i~~~M~~~---~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-----~~p 1279 (1991)
+ ....+ ..+...|..++|.++++..... .+..+. ...+..|...|...|++++|.++++++... .++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2 22222 2334568899999998877542 122232 467888999999999999999999876431 111
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---C----chHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1280 -TASAWGALLSACRSYGNTELGAGATSRILELEAQ---N----SAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1280 -d~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~---~----~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...++..++..|...|+++.|...+++++...+. . ...+..++.+|...|+|++|.....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 2558888899999999999999999999876432 2 2446677889999999999987544
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.87 E-value=0.00091 Score=81.63 Aligned_cols=109 Identities=8% Similarity=-0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
.+..+...+...|++++|...|+..++ +.|+... +...|+.+++...+. ..+|..+..++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l~---------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAVK---------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence 355566677789999999999998865 4454321 223344555544332 147888999999
Q ss_pred HcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1293 SYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1293 ~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..|+++.|...++++++++|+++.+|..++.+|...|++++|......
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~ 289 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRK 289 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876653
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.83 E-value=0.0041 Score=66.54 Aligned_cols=91 Identities=12% Similarity=-0.031 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC--------H-----HHHHHHHHHHHHcCChhHHHHHHHHHHhc-----
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMPDNLKAT--------A-----SAWGALLSACRSYGNTELGAGATSRILEL----- 1310 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd--------~-----~~~~~Ll~a~~~~g~~e~A~~~~e~llel----- 1310 (1991)
.+......+.+.|++++|.+.+++..+. .|+ . ..|..+..++...|++++|+..+++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI-SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4556677888999999999999988762 232 3 39999999999999999999999999999
Q ss_pred --CCCCchHH----HHHHHHHHhCCCchhHHHHHHH
Q 040435 1311 --EAQNSAGY----LLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1311 --~P~~~~~y----vlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+|+++.+| ..++.++...|++++|....+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k 127 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence 99999999 9999999999999999986553
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.04 Score=68.68 Aligned_cols=209 Identities=7% Similarity=-0.044 Sum_probs=133.6
Q ss_pred HhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCCHH
Q 040435 1083 AGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAKCGAIE 1162 (1991)
Q Consensus 1083 ~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e 1162 (1991)
..+.+.|++++|++.|.++.+..-...... ...+......... ...+..|...|.+.|+++
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~-----------~~al~~l~~~y~~~~~~~ 72 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAA--------AGASVDDKRRNEQ-----------ETSILELGQLYVTMGAKD 72 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBS--------SSSSBCSHHHHHH-----------HHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhH--------HHHHHHHHHhhhH-----------HHHHHHHHHHHHHCCCHH
Confidence 456778888888888888876532221100 0000001100000 112456778888889999
Q ss_pred HHHHHHHhccC-----CCH----hHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHH
Q 040435 1163 ASRKAFDQISR-----KNI----VSWSAMVAAYGMNGLAHEALALVAEMKL----GGLQPN-AVTTLSVLSACSHGGLVE 1228 (1991)
Q Consensus 1163 ~A~~lf~~m~~-----~d~----~s~n~LI~ay~~~G~~~eAl~lf~eM~~----~Gi~Pd-~~T~~~LL~ac~~~G~~e 1228 (1991)
+|.+.+..+.+ ++. ...+.+-..+...|+.++|++++++... .+..+. ..++..+...+...|+++
T Consensus 73 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (434)
T 4b4t_Q 73 KLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYK 152 (434)
T ss_dssp HHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChH
Confidence 88888887653 111 1233333344456788899888887653 333333 346677788888999999
Q ss_pred HHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCC----HHHHHHHHHHHHHcCCh
Q 040435 1229 EGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LKAT----ASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1229 ~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd----~~~~~~Ll~a~~~~g~~ 1297 (1991)
+|..+++.+.....-..+ ...|..++.+|...|++++|..++++.... ...+ ...+..++..+...|++
T Consensus 153 ~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y 232 (434)
T 4b4t_Q 153 DSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDY 232 (434)
T ss_dssp HHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhH
Confidence 999998887654222221 567888899999999999999998876431 2212 34556666667778899
Q ss_pred hHHHHHHHHHHhc
Q 040435 1298 ELGAGATSRILEL 1310 (1991)
Q Consensus 1298 e~A~~~~e~llel 1310 (1991)
+.|...+.++++.
T Consensus 233 ~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 233 KTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888763
No 201
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.45 E-value=0.015 Score=74.04 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=68.2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----------------HhHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 040435 1144 EVAVGTAVVDMYAKCGAIEASRKAFDQISR--KN----------------IVSWSAMVAAYGMNGLAHEALALVAEMKLG 1205 (1991)
Q Consensus 1144 d~~v~naLI~~y~k~G~~e~A~~lf~~m~~--~d----------------~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~ 1205 (1991)
....+..+...|.+.|++++|...|++..+ |+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888999999999999999998764 32 345555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 040435 1206 GLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAI 1267 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~ 1267 (1991)
. +-+...+..+..++...|++++|+..|+.+++ +.|+ ...+..+..++.+.|+.++|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 12344444455555555555555555555433 3442 334444444454445444443
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.41 E-value=0.0066 Score=60.71 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=47.7
Q ss_pred HHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 040435 1230 GLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRIL 1308 (1991)
Q Consensus 1230 A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~ll 1308 (1991)
|.+.|+..++ ..| +...+..+..+|.+.|++++|.+.+++.....+.+...|..|..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555543 344 345566666666666666666666666554334455566666666666666666666666666
Q ss_pred hcCCC
Q 040435 1309 ELEAQ 1313 (1991)
Q Consensus 1309 el~P~ 1313 (1991)
++.|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 66553
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.37 E-value=0.0036 Score=66.86 Aligned_cols=92 Identities=13% Similarity=0.029 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHCccCCCCCHHHHHHHHHHH
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGE----------LDIAIDLINQMPDNLKATASAWGALLSAC 1291 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~----------~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~ 1291 (1991)
+.+.+++|.+.++..++ +.| +...|..+..++.+.|+ +++|+..+++..+..+.+..+|..|..+|
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 33445666666666554 345 45566666666666554 45788888877664445677888888888
Q ss_pred HHc-----------CChhHHHHHHHHHHhcCCCCchH
Q 040435 1292 RSY-----------GNTELGAGATSRILELEAQNSAG 1317 (1991)
Q Consensus 1292 ~~~-----------g~~e~A~~~~e~llel~P~~~~~ 1317 (1991)
... |++++|+..++++++++|++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 776 48999999999999999998654
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.28 E-value=0.015 Score=71.88 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 040435 1146 AVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQP-NAVTTLSVLSACSHG 1224 (1991)
Q Consensus 1146 ~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~P-d~~T~~~LL~ac~~~ 1224 (1991)
..+..+...|.+.|++++|...|++..+-... .......+++.+ ..| +...|..+..++.+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~--------~~~~~~~~~~~~---------~~~~~~~~~~nla~~~~~~ 286 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEG--------SRAAAEDADGAK---------LQPVALSCVLNIGACKLKM 286 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------HHHHSCHHHHGG---------GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc--------CccccChHHHHH---------HHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999876540000 000000111100 111 223444555555556
Q ss_pred CCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 040435 1225 GLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1225 G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
|++++|++.+++.++ +.| +...|..+..+|.+.|++++|.+.++++.+..+.+..++..|...+...++.+++.
T Consensus 287 g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 287 SDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666655543 344 34555555666666666666666666554433334555555555555555444443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.19 E-value=0.014 Score=56.99 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1279 ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1279 pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
.+..+|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|....+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566677777777777777777777777777777777777777777777777777766544
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.13 E-value=0.015 Score=57.99 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQ 1272 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~ 1272 (1991)
+|++.|++..+.. +.+...+..+...+...|++++|...++..++ +.| +...|..+..+|.+.|++++|...+++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3555555555432 22344555555566666666666666666554 233 345555666666666666666666655
Q ss_pred Cc
Q 040435 1273 MP 1274 (1991)
Q Consensus 1273 m~ 1274 (1991)
..
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.10 E-value=0.0044 Score=66.19 Aligned_cols=84 Identities=5% Similarity=-0.101 Sum_probs=72.3
Q ss_pred HHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh----------hHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT----------ELGAGATSRILELEAQNSAGYLLASSMYA 1326 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~----------e~A~~~~e~llel~P~~~~~yvlL~~lya 1326 (1991)
..|.+++++|.+.++...+..+.+...|..+..++...+++ ++|+..++++++++|+++.+|..++++|.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 45678899999999998875567899999999998888765 59999999999999999999999999999
Q ss_pred hCC-----------CchhHHHHHHH
Q 040435 1327 AGG-----------LWVESSGTRLL 1340 (1991)
Q Consensus 1327 ~~G-----------~~~ea~~vr~~ 1340 (1991)
..| ++++|....+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHH
Confidence 875 78888876553
No 208
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.0089 Score=58.66 Aligned_cols=95 Identities=12% Similarity=0.067 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC-------HH
Q 040435 1176 IVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA-------LE 1248 (1991)
Q Consensus 1176 ~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~-------~~ 1248 (1991)
...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|++.++..++ +.|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHHH
Confidence 3455556666666677777777766666532 22455556666666666777777766666654 4454 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1249 HYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1249 ~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
.+..+..++...|+.++|.+.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 44444555555555555554444443
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.70 E-value=0.067 Score=69.81 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC----------HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHH
Q 040435 1190 GLAHEALALVAEMKLGGLQPNAV-TTLSVLSACSHGGL----------VEEGLSFFNSMVQDHGVEP-ALEHYSCMVDML 1257 (1991)
Q Consensus 1190 G~~~eAl~lf~eM~~~Gi~Pd~~-T~~~LL~ac~~~G~----------~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l 1257 (1991)
...++|+++++++.+ +.|+.. .|+.--.++.+.|. ++++++.++.+++ ..| +...|..-..++
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 346789999999998 456554 45554455555566 9999999999987 456 567888888889
Q ss_pred HHcC--CHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1258 ARAG--ELDIAIDLINQMPDNLKATASAWGALLSACRSYG-NTELGAGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1258 ~r~G--~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g-~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
.+.| ++++|.++++++.+..+.+..+|+.-.......| ..+++.+.++++++.+|.+.++|...+.++...
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 9999 7899999999998866778999999999999999 899999999999999999999999999998875
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.62 E-value=0.035 Score=53.45 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHCccCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1253 MVDMLARAGELDIAIDLINQMPDNLKATAS-AWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1253 Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~-~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
....+.+.|++++|.+.++++.+..+.+.. .|..+..++...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888999999988888764455677 888888889999999999999999999999988776
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.55 E-value=0.044 Score=53.13 Aligned_cols=69 Identities=19% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCC
Q 040435 1278 KATASAWGALLSACRSYGN---TELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGV 1346 (1991)
Q Consensus 1278 ~pd~~~~~~Ll~a~~~~g~---~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi 1346 (1991)
++++..|..+..++...++ .++|...++++++++|+++.+..++++++...|++++|...+..+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677888888888876655 68999999999999999999999999999999999999998887766543
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.00 E-value=0.13 Score=65.77 Aligned_cols=97 Identities=9% Similarity=-0.110 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHh----cCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCC
Q 040435 1213 TTLSVLSACSHGGLVEEGLSFFNSMVQD----HGV-EPA-LEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKA 1279 (1991)
Q Consensus 1213 T~~~LL~ac~~~G~~e~A~~i~~~M~~~----~gi-~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~p 1279 (1991)
+++.|..+|...|++++|..++++.++- +|- .|+ ..+++.|..+|...|++++|+.++++..+. ..|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444555555555555555555544321 111 122 345566666666666666666666655321 122
Q ss_pred CHH-HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1280 TAS-AWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1280 d~~-~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
+.. +...|-.++...|.+++|+..+.++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233333344456667777777766654
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.00 E-value=0.027 Score=54.95 Aligned_cols=69 Identities=7% Similarity=0.029 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQN 1314 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~ 1314 (1991)
+...+..+..+|.+.|++++|.+.++++.+..+.+..+|..|..++...|+.++|...+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 456777788888888888888888888766445567788888888888888888888888888876643
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.95 E-value=0.24 Score=60.03 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=90.4
Q ss_pred CCHhHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH----hcC-C---HHHHHHHHHHhHH
Q 040435 1174 KNIVSWSAMVAAYGM--NG---LAHEALALVAEMKLGGLQPNA-VTTLSVLSACS----HGG-L---VEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1174 ~d~~s~n~LI~ay~~--~G---~~~eAl~lf~eM~~~Gi~Pd~-~T~~~LL~ac~----~~G-~---~e~A~~i~~~M~~ 1239 (1991)
.+...|...+.+... .+ ...+|+.+|++..+ +.|+- ..+..+..++. ..+ . .....+.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 356667776655432 22 24678888888877 45653 33333333332 110 1 1111111221111
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHH
Q 040435 1240 DHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYL 1319 (1991)
Q Consensus 1240 ~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yv 1319 (1991)
......+...|..+.-++...|++++|...++++... .|+...|..+...+...|+.++|...+++++.++|..+ +|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 0112335778888777777779999999999988873 47877887778888889999999999999999999765 455
Q ss_pred HHHH
Q 040435 1320 LASS 1323 (1991)
Q Consensus 1320 lL~~ 1323 (1991)
+..+
T Consensus 348 ~~~~ 351 (372)
T 3ly7_A 348 WIEN 351 (372)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 4444
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.94 E-value=0.1 Score=54.33 Aligned_cols=113 Identities=6% Similarity=-0.071 Sum_probs=85.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHH----cCCHH
Q 040435 1189 NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLAR----AGELD 1264 (1991)
Q Consensus 1189 ~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r----~G~~e 1264 (1991)
.++.++|+++|++..+.| .|+.. |-..|...+.+++|.++|++..+. -+...+..|..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346788899999888877 44444 555566677788888888887652 356777788888887 78888
Q ss_pred HHHHHHHHCccCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCC
Q 040435 1265 IAIDLINQMPDNLKATASAWGALLSACRS----YGNTELGAGATSRILELEA 1312 (1991)
Q Consensus 1265 eA~~l~~~m~~~~~pd~~~~~~Ll~a~~~----~g~~e~A~~~~e~llel~P 1312 (1991)
+|.+++++..+. -++..+..|...|.. .+|.++|...++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 898888888753 466778888888887 7888888888888887743
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=94.65 E-value=0.14 Score=64.27 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC----C---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCC
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN----L---KA-TASAWGALLSACRSYGNTELGAGATSRILE-----LEAQN 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~---~p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~ 1314 (1991)
.+++.|..+|...|++++|+.+++++.+. . .| -..+++.|...|...|++++|+..++++++ ++|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555555555555555555544320 1 12 244677777777777777777777777766 56777
Q ss_pred chHHH
Q 040435 1315 SAGYL 1319 (1991)
Q Consensus 1315 ~~~yv 1319 (1991)
|.+-.
T Consensus 421 p~~~~ 425 (433)
T 3qww_A 421 PYISE 425 (433)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.51 E-value=0.21 Score=62.63 Aligned_cols=74 Identities=11% Similarity=-0.028 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCccC----CC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCC
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMPDN----LK---A-TASAWGALLSACRSYGNTELGAGATSRILE-----LEAQN 1314 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~~~----~~---p-d~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~ 1314 (1991)
.+++.|..+|...|++++|+.+++++... .. | -..+++.|...|...|++++|+..++++++ ++|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555544320 11 1 245667777777777777777777777766 57887
Q ss_pred chHHHHH
Q 040435 1315 SAGYLLA 1321 (1991)
Q Consensus 1315 ~~~yvlL 1321 (1991)
|.+-.++
T Consensus 410 p~~~~~~ 416 (429)
T 3qwp_A 410 SLIEDLI 416 (429)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7655443
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.27 E-value=0.99 Score=61.05 Aligned_cols=100 Identities=15% Similarity=0.059 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHH
Q 040435 1054 YSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAH 1133 (1991)
Q Consensus 1054 y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~ 1133 (1991)
...+|+++.|.++.+.+. +...|..|...+.+.|+++.|.+.|.++.. |..+...+...++.+....+-
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 455677777777766553 446777777788888888888887777643 223333344455555444444
Q ss_pred HHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHh
Q 040435 1134 GIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQ 1170 (1991)
Q Consensus 1134 ~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~ 1170 (1991)
..+...|. ++.-...|.++|++++|.+++.+
T Consensus 731 ~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 731 KDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443331 23334445566666666665543
No 219
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.16 E-value=0.23 Score=46.25 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=36.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEP-ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACR 1292 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~ 1292 (1991)
+..+...+...|++++|...++..++. .| +...+..+..+|.+.|++++|.+.+++..+..+.+..++..+..++.
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALEL---DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 334444444555555555555554432 22 24445555555555555555555555544322334444444444433
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.63 E-value=0.31 Score=59.04 Aligned_cols=128 Identities=18% Similarity=0.196 Sum_probs=89.5
Q ss_pred CCCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHH----HcC-------CHHHHHHH
Q 040435 1207 LQPNAVTTLSVLSACS--HGG---LVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLA----RAG-------ELDIAIDL 1269 (1991)
Q Consensus 1207 i~Pd~~T~~~LL~ac~--~~G---~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~----r~G-------~~eeA~~l 1269 (1991)
.+.+...|...+.+.. ..+ ...+|..+|++.++ ++|+ ...|..+..+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3456667777776654 333 35789999999987 6887 344443333332 111 11223332
Q ss_pred HHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1270 INQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1270 ~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
...+. ..+.++.+|.++.-.+...|+.+.|...++++++++|. ...|++++.++...|++++|.....
T Consensus 267 ~~a~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 267 IVTLP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHTCG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 22222 24668889999988888889999999999999999974 6788999999999999999997654
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.43 E-value=1.2 Score=60.23 Aligned_cols=102 Identities=16% Similarity=0.092 Sum_probs=56.0
Q ss_pred HHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
+..+|++++|.++.+.+ .+...|..|...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 34556777777666555 2446677777777777777777777776642 233333344455555544443
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1235 NSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1235 ~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
+.... .| .+..-..+|.+.|++++|.+++.++.
T Consensus 731 ~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 33321 11 12333344555666666666666554
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.35 E-value=0.54 Score=48.76 Aligned_cols=79 Identities=5% Similarity=-0.162 Sum_probs=36.8
Q ss_pred hcCCHHHHHHHHHhccC-CCHhHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 040435 1157 KCGAIEASRKAFDQISR-KNIVSWSAMVAAYGM----NGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSH----GGLV 1227 (1991)
Q Consensus 1157 k~G~~e~A~~lf~~m~~-~d~~s~n~LI~ay~~----~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~----~G~~ 1227 (1991)
..+.+++|.+.|++..+ .+...+..|-..|.. .++.++|+++|++..+.| +...+..|-..|.. .++.
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~ 113 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 113 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred cCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCH
Confidence 33334444444443332 234444444444444 445555555555555443 33344444444444 4555
Q ss_pred HHHHHHHHHhH
Q 040435 1228 EEGLSFFNSMV 1238 (1991)
Q Consensus 1228 e~A~~i~~~M~ 1238 (1991)
++|.++|+...
T Consensus 114 ~~A~~~~~~Aa 124 (138)
T 1klx_A 114 KQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 223
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.25 E-value=0.079 Score=50.88 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=46.9
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEP-ALE-HYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT 1297 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P-~~~-~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~ 1297 (1991)
.+...|++++|.+.++..++ ..| +.. .+..+..+|.+.|++++|.+.+++..+..+.+..+|.. +.+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 44556666666666666654 234 344 56666666666666666666666665432223333311 344
Q ss_pred hHHHHHHHHHHhcCCCCc
Q 040435 1298 ELGAGATSRILELEAQNS 1315 (1991)
Q Consensus 1298 e~A~~~~e~llel~P~~~ 1315 (1991)
.++...++++.+.+|+++
T Consensus 78 ~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 78 MDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHhccCcccc
Confidence 555556666666665543
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.16 E-value=0.32 Score=61.01 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=63.5
Q ss_pred HHHcCCHHHHHHHHHHCccC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---hHHHH
Q 040435 1257 LARAGELDIAIDLINQMPDN----LKAT----ASAWGALLSACRSYGNTELGAGATSRILE-----LEAQNS---AGYLL 1320 (1991)
Q Consensus 1257 l~r~G~~eeA~~l~~~m~~~----~~pd----~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~---~~yvl 1320 (1991)
+.+.|++++|++++++..+. +.|+ ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44566677777666655331 2222 46889999999999999999999999987 456665 45778
Q ss_pred HHHHHHhCCCchhHHHHHH
Q 040435 1321 ASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1321 L~~lya~~G~~~ea~~vr~ 1339 (1991)
|+.+|...|++++|..+.+
T Consensus 377 La~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 8999999999999998654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.78 E-value=0.28 Score=48.23 Aligned_cols=76 Identities=13% Similarity=0.014 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccC-------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDN-------LKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~-------~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
+..-+..|...+.+.|+++.|...++.+.+. ..+...++..|..++.+.|+.+.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3445566777788888888888888776442 123567899999999999999999999999999999997765
Q ss_pred HHH
Q 040435 1319 LLA 1321 (1991)
Q Consensus 1319 vlL 1321 (1991)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 444
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.71 E-value=0.24 Score=62.20 Aligned_cols=59 Identities=8% Similarity=-0.005 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----cCCCCc---hHHHHHHHHHHhCCCchhHHHHHH
Q 040435 1281 ASAWGALLSACRSYGNTELGAGATSRILE-----LEAQNS---AGYLLASSMYAAGGLWVESSGTRL 1339 (1991)
Q Consensus 1281 ~~~~~~Ll~a~~~~g~~e~A~~~~e~lle-----l~P~~~---~~yvlL~~lya~~G~~~ea~~vr~ 1339 (1991)
..+++.|..+|...|++++|+..++++++ +.|++| ..+..|+.+|..+|++++|..+..
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 46889999999999999999999999987 466665 457788999999999999998654
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.08 E-value=0.77 Score=44.26 Aligned_cols=72 Identities=10% Similarity=-0.076 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1245 PALEHYSCMVDMLARAGE---LDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1245 P~~~~y~~Li~~l~r~G~---~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
.+...+..+..++...++ .++|..++++.....+.++..+..|...+...|+++.|...++++++.+|.++.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 356777778887766554 688999998887755667888888888899999999999999999999988433
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.98 E-value=1 Score=47.55 Aligned_cols=91 Identities=15% Similarity=0.003 Sum_probs=61.2
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHCccCCCC--CHHHHHHHHHHHHHcCChhHHHH
Q 040435 1228 EEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAG---ELDIAIDLINQMPDNLKA--TASAWGALLSACRSYGNTELGAG 1302 (1991)
Q Consensus 1228 e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G---~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~~~g~~e~A~~ 1302 (1991)
..+.+.|.+..+. | .++..+...+..+|.+.+ +++++..++++..+...| ....+..|.-+|.+.|+++.|.+
T Consensus 15 ~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3444444444331 1 245666666666677766 555777777666543223 35677788888999999999999
Q ss_pred HHHHHHhcCCCCchHHHH
Q 040435 1303 ATSRILELEAQNSAGYLL 1320 (1991)
Q Consensus 1303 ~~e~llel~P~~~~~yvl 1320 (1991)
.++++++++|++..+..+
T Consensus 93 y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHH
Confidence 999999999988664443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=88.75 E-value=12 Score=38.35 Aligned_cols=65 Identities=12% Similarity=0.014 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHHcCCc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKERGVK 1347 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~~gi~ 1347 (1991)
...-.+.....+|..++-.+++..++.-++-+|...+-++++|.+.|...++..+++.--++|++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33444455555666666666665554444445565666666666666666666666655556654
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=87.81 E-value=1.4 Score=51.44 Aligned_cols=83 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHCccCCCC--CHHHHHHHHHHHHH-cC
Q 040435 1227 VEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARA-----GELDIAIDLINQMPDNLKA--TASAWGALLSACRS-YG 1295 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~-----G~~eeA~~l~~~m~~~~~p--d~~~~~~Ll~a~~~-~g 1295 (1991)
+.+|...+++.++ +.|+ ...|..|...|.+. |+.++|.+.|++..+ +.| +..++..+...++. .|
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcC
Confidence 4455555555544 5666 34666666666664 666666666666655 233 25555555665555 36
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 040435 1296 NTELGAGATSRILELEAQ 1313 (1991)
Q Consensus 1296 ~~e~A~~~~e~llel~P~ 1313 (1991)
+.+.+.+.+++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 666666666666666665
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.77 E-value=17 Score=39.16 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=66.4
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHH
Q 040435 1052 DGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKW 1131 (1991)
Q Consensus 1052 ~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~ 1131 (1991)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..++--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788889888888776 3567899999999999999999888887653 3334334455566555444
Q ss_pred HHHHHHHhccccchhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 040435 1132 AHGIAIRRCLAEEVAVGTAVVDMYAKCGAIEASRKAFDQISR 1173 (1991)
Q Consensus 1132 i~~~~~k~g~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~ 1173 (1991)
+-......|- ++.-...+.-.|+++++.++|.+..+
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 4444443331 23333344455666666666655543
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.99 E-value=15 Score=39.60 Aligned_cols=129 Identities=10% Similarity=0.089 Sum_probs=82.1
Q ss_pred HHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHH
Q 040435 951 DMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKS 1030 (1991)
Q Consensus 951 ~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~ 1030 (1991)
+....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..++--|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455788888888887766 4677899999999999999999999988753 3444444555666666555
Q ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHH
Q 040435 1031 VHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEM 1101 (1991)
Q Consensus 1031 i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M 1101 (1991)
+-......| -+|.....+.-.|+++++.++|.+..+.+... ......|..+.|.++..++
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~-----~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY-----AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH-----HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH-----HHHHHcCcHHHHHHHHHHh
Confidence 544444444 23444555667788888888877665422111 1111245556666666554
No 233
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.22 E-value=1.2e+02 Score=39.35 Aligned_cols=251 Identities=8% Similarity=0.006 Sum_probs=121.1
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChH
Q 040435 1048 NSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELS 1127 (1991)
Q Consensus 1048 naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le 1127 (1991)
+.-+..+++.+++.....++.. ...+...-.....+....|+..+|....+++-..|- ........++..+...|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCC
Confidence 3344555666666666665554 222333333344555566776666666666655442 12223444555555444332
Q ss_pred HH--HHHHHHHHHhc-----------cccc-hhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHh---HHHHHHHHHHHcC
Q 040435 1128 SS--KWAHGIAIRRC-----------LAEE-VAVGTAVVDMYAKCGAIEASRKAFDQISRKNIV---SWSAMVAAYGMNG 1190 (1991)
Q Consensus 1128 ~a--~~i~~~~~k~g-----------~~~d-~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~---s~n~LI~ay~~~G 1190 (1991)
.. .+=...+...| +.++ .....+++..+.+-..+ ....... .++.. .+..-+.-+++.
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar~- 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVARQ- 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHhc-
Confidence 21 11111111111 1111 11223333333222222 1221111 11111 111122233333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 040435 1191 LAHEALALVAEMKLGGLQPNAVTTLSVLSAC----SHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIA 1266 (1991)
Q Consensus 1191 ~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac----~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA 1266 (1991)
+.+.|..+|......+ ..+......+-... ...+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 6788999998886543 23433333232222 333434566666665533 223333333344445578999999
Q ss_pred HHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 040435 1267 IDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1267 ~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~lle 1309 (1991)
...|+.|+...........=+..+....|+.+.|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999763212233233345567788999999999988875
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.62 E-value=8.3 Score=39.20 Aligned_cols=93 Identities=16% Similarity=-0.024 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHCccCCCC--CHHHHHHHHHHHHHcCChhHHH
Q 040435 1227 VEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDI---AIDLINQMPDNLKA--TASAWGALLSACRSYGNTELGA 1301 (1991)
Q Consensus 1227 ~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~ee---A~~l~~~m~~~~~p--d~~~~~~Ll~a~~~~g~~e~A~ 1301 (1991)
+..+.+-|...... |. |+..+--.+..+|.+..+..+ ++.++++......| .......|.-++.+.|+++.|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444445444332 22 566666666777777776555 77777776553223 3345666777899999999999
Q ss_pred HHHHHHHhcCCCCchHHHHH
Q 040435 1302 GATSRILELEAQNSAGYLLA 1321 (1991)
Q Consensus 1302 ~~~e~llel~P~~~~~yvlL 1321 (1991)
+..+.+++.+|++.-+..+.
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 99999999999987655443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.19 E-value=4 Score=54.25 Aligned_cols=53 Identities=11% Similarity=0.004 Sum_probs=47.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1288 LSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1288 l~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
..-|...|+++.|..+++++...-|.+..++..|+.+|...|+|+.|.-...-
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 33467789999999999999999999999999999999999999999866553
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=77.34 E-value=9.1 Score=37.11 Aligned_cols=62 Identities=8% Similarity=0.064 Sum_probs=35.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGV-----EPALEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi-----~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
...|...+...|+++.|...|+...+...- .+....+..|..+|.+.|++++|..+++++..
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344455555666666666666655443211 12345566666667777777777777666654
No 237
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=75.41 E-value=5.2 Score=42.13 Aligned_cols=80 Identities=5% Similarity=-0.231 Sum_probs=63.9
Q ss_pred HHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhcC-C-CCchHHHHHHHHHHhCCCchhHHHH
Q 040435 1263 LDIAIDLINQMPDNLKATASAWGALLSACRSYG---NTELGAGATSRILELE-A-QNSAGYLLASSMYAAGGLWVESSGT 1337 (1991)
Q Consensus 1263 ~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g---~~e~A~~~~e~llel~-P-~~~~~yvlL~~lya~~G~~~ea~~v 1337 (1991)
+..+.+-+++......++..+.-.+..++.+.+ +.++|+..++.+++.+ | ++...++.|+..|++.|++++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344555555544434578899999999999988 6679999999999998 7 5678889999999999999999987
Q ss_pred HHHHH
Q 040435 1338 RLLAK 1342 (1991)
Q Consensus 1338 r~~m~ 1342 (1991)
.+...
T Consensus 94 ~~~lL 98 (152)
T 1pc2_A 94 VRGLL 98 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.68 E-value=3.3 Score=51.31 Aligned_cols=396 Identities=12% Similarity=0.078 Sum_probs=198.4
Q ss_pred ccccchhhccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccc-hhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 040435 674 WNLRVKELSKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLS-YIHGRLVHACLVKQGYESFTSIGNALMDFYM 752 (1991)
Q Consensus 674 cn~li~ay~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~-~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~ 752 (1991)
|..+.+++.+.++..+|+..|-+ ..|+..|..++.++...+ ...-..... |.+.. ..++.+-+.|+-+|+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIk-------A~Dps~y~eVi~~A~~~~~~edLv~yL~-MaRk~-~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQ-MARKK-ARESYVETELIFALA 127 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCC-------CSCCCSSSHHHHHTTTSSCCTTHHHHHH-TTSTT-CCSTTTTHHHHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHh-------CCChHHHHHHHHHHHhCCCHHHHHHHHH-HHHHH-hcccccHHHHHHHHH
Confidence 66666666677777777666533 235556666777666555 222222221 22211 334455567777777
Q ss_pred hcCCchHH----------------------------HHHHhhcC------------------------CCChHHHHHHHH
Q 040435 753 KWRFPDSA----------------------------VAVFDDCI------------------------CRDSVSWNIMIQ 780 (1991)
Q Consensus 753 k~G~~~~A----------------------------~~lfd~m~------------------------~~d~~s~n~LI~ 780 (1991)
|.+++.+- +-+|..+. ..++.+|-.+-.
T Consensus 128 k~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ 207 (624)
T 3lvg_A 128 KTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 207 (624)
T ss_dssp TSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTH
T ss_pred hhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 76665543 22222221 124556666666
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhCCHHH
Q 040435 781 GHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIRSGL-WAVHSVQNSVLSMYVDADMEC 859 (1991)
Q Consensus 781 a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k~G~-~~d~~v~naLi~~yakg~~e~ 859 (1991)
+|...+.++-|--.--.+.-. || -+..++.-|-..|.+++-..+++..+ |+ .....+++-|--.|+|-+.++
T Consensus 208 ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~PeK 280 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFKPQK 280 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSCTTH
T ss_pred HHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcCHHH
Confidence 666666655443332222211 11 12234444555566665555555443 32 345678888888899855544
Q ss_pred HHHHHHh----cCCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhCC-------------CCCCCHHHHHHHH
Q 040435 860 ARKLFDE----MCER-------DVISWSVMIGGYVQSAEAFSGLRLFRQMVSGF-------------KNEPDGQSLVSVL 915 (1991)
Q Consensus 860 A~~vf~~----m~~~-------d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~-------------gv~Pd~~T~~~lL 915 (1991)
..+-++. +.-| ....|..++--|.+...++.|... |.+.. .-..|...|=..|
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi 357 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAI 357 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHH
Confidence 4444332 2222 344677788888877777766532 22110 0112333333333
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHH-HHHHHHHhcCCHHHHH
Q 040435 916 KACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWN-SALSGLVVNEKYSEAL 994 (1991)
Q Consensus 916 ~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n-~LI~a~~~~g~~~eAl 994 (1991)
..|....= ..--.++.-+ ...+.+ +..+++..+.|.+.-....+......|...-| ++-.-|....+++.-.
T Consensus 358 ~FYL~e~P-~lL~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR 430 (624)
T 3lvg_A 358 QFYLEFKP-LLLNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 430 (624)
T ss_dssp HHHTTSCC-TTSHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhCh-HHHHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHH
Confidence 33332210 0000011000 001111 13445566666666666666666655554444 4555666666654322
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCCCc
Q 040435 995 SLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKKPD 1074 (1991)
Q Consensus 995 ~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~~d 1074 (1991)
. - +..|.+...+..|.++- ++ .-...-..-...|.+.++++.+..+.++
T Consensus 431 ~----S---------------Id~ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk----- 479 (624)
T 3lvg_A 431 T----S---------------IDAYDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQSVELCKK----- 479 (624)
T ss_dssp H----T---------------TSSCCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHHSSCSST-----
T ss_pred H----H---------------HHHhccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHHHHHHHh-----
Confidence 1 1 12222233333333321 10 0111112233457777888777655422
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSS 1129 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a 1129 (1991)
--.|--.|...+..|+.+-|.++++-..+.| +...|...|-.|-..=+.+.+
T Consensus 480 DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvV 531 (624)
T 3lvg_A 480 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVV 531 (624)
T ss_dssp TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHH
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHH
Confidence 2345556667778888888888888887765 345577777788777555544
No 239
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=73.70 E-value=5.6 Score=46.39 Aligned_cols=113 Identities=14% Similarity=0.129 Sum_probs=81.2
Q ss_pred cCCHHHHHHHHHhccCCCH--hHHHHHHHH-HHHc--C------CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 040435 1158 CGAIEASRKAFDQISRKNI--VSWSAMVAA-YGMN--G------LAHEALALVAEMKLGGLQPN---AVTTLSVLSACSH 1223 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~~d~--~s~n~LI~a-y~~~--G------~~~eAl~lf~eM~~~Gi~Pd---~~T~~~LL~ac~~ 1223 (1991)
.|+..+-.+.+.++...++ ..|..++.+ +... | ...+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444555555666654443 467776653 3332 2 25677788888877 5676 4567777777887
Q ss_pred -----cCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHCcc
Q 040435 1224 -----GGLVEEGLSFFNSMVQDHGVEPA--LEHYSCMVDMLARA-GELDIAIDLINQMPD 1275 (1991)
Q Consensus 1224 -----~G~~e~A~~i~~~M~~~~gi~P~--~~~y~~Li~~l~r~-G~~eeA~~l~~~m~~ 1275 (1991)
.|+.++|.++|++.++ +.|+ ..++....+.|++. |+.++|.+.+++...
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 4999999999999887 7883 78888888988884 999999999998865
No 240
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=68.41 E-value=89 Score=32.09 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 040435 1246 ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELE 1311 (1991)
Q Consensus 1246 ~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~ 1311 (1991)
+.++...-++.+..+|+.+.-.++..++..+.+|++...-.+..||.+-|+..+|.++..++-+.+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 344555556666666766666666666443455666666667777777777777766666665543
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=64.99 E-value=31 Score=42.16 Aligned_cols=69 Identities=12% Similarity=-0.011 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH-----HHHcCCcccCc
Q 040435 1283 AWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL-----AKERGVKVVAG 1351 (1991)
Q Consensus 1283 ~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~-----m~~~gi~k~~g 1351 (1991)
+...++.++...|+.+.+...++++++.+|-+...|..|..+|+..|+..+|.+.... ..+.|+.|.|.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 4455677777888888888888888888888888888888888888988888775443 24568766554
No 242
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=64.72 E-value=0.029 Score=68.79 Aligned_cols=193 Identities=17% Similarity=0.231 Sum_probs=101.5
Q ss_pred hhhhhHHHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHH
Q 040435 1075 VVLWSTMIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDM 1154 (1991)
Q Consensus 1075 ~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~ 1154 (1991)
...|..|..++.+.++..+|++.|-+ .-|...|..++.++.+.|.++.-...+..+.+.. .++.+-+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34699999999999988888765521 1244456667777776666665554444443331 222333444444
Q ss_pred HHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040435 1155 YAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFF 1234 (1991)
Q Consensus 1155 y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~ 1234 (1991)
|+| .++..+-.+++ -.||..-...+..-|...|.++.|.-+|
T Consensus 126 yAk-------------------------------~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 126 LAK-------------------------------TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHT-------------------------------SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHh-------------------------------hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 444 44433322221 1244444455555666666666665555
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHH--------------
Q 040435 1235 NSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELG-------------- 1300 (1991)
Q Consensus 1235 ~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A-------------- 1300 (1991)
..+.. |+-|...|.+.|++.+|.+--++.. +..+|..+-.+|...+.+..|
T Consensus 168 s~isN----------~akLAstLV~L~~yq~AVdaArKAn-----s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL 232 (624)
T 3lvg_A 168 NNVSN----------FGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 232 (624)
T ss_dssp GGSCC----------CTTTSSSSSSCSGGGSSTTTTTTCC-----SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC
T ss_pred HhCcc----------HHHHHHHHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH
Confidence 54311 2223333344455555444433332 334555555555555555555
Q ss_pred ----------------HHHHHHHHhcCCCCchHHHHHHHHHHhC
Q 040435 1301 ----------------AGATSRILELEAQNSAGYLLASSMYAAG 1328 (1991)
Q Consensus 1301 ----------------~~~~e~llel~P~~~~~yvlL~~lya~~ 1328 (1991)
+.+++..+.++.-+.+.+.-|+.+|++-
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 4445555555555566666666666655
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.91 E-value=44 Score=38.38 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=26.4
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 040435 1186 YGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV 1238 (1991)
Q Consensus 1186 y~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~ 1238 (1991)
+.+.|..++|++....-++.. +-|...-..++.-++-.|++++|.+-++...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555555555555554432 2244444445555555566666655555443
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.92 E-value=28 Score=35.59 Aligned_cols=77 Identities=9% Similarity=0.122 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHCccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1243 VEPALEHYSCMVDMLARAGEL---DIAIDLINQMPDNLK-ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1243 i~P~~~~y~~Li~~l~r~G~~---eeA~~l~~~m~~~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
-.|+..+--.+..+|.+.... .+++.++++.....+ -....+.-|.-|+.+.|+++.|.+..+.+++.+|+|.-+-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345555555566666666543 346666665543211 1345667777788999999999999999999999886543
Q ss_pred H
Q 040435 1319 L 1319 (1991)
Q Consensus 1319 v 1319 (1991)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.03 E-value=3.2e+02 Score=33.77 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhHHh-cCCCCC----H
Q 040435 1178 SWSAMVAAYGMNGLAHEALALVAEMKLG--GLQPN---AVTTLSVLSACSHGGLVEEGLSFFNSMVQD-HGVEPA----L 1247 (1991)
Q Consensus 1178 s~n~LI~ay~~~G~~~eAl~lf~eM~~~--Gi~Pd---~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~-~gi~P~----~ 1247 (1991)
....|...|-..|++.+|..++.++... |.-.. ...+...+..|...+++.+|..++.++... ....+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888899999999999988642 22111 124566677899999999999999887432 112222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHCc
Q 040435 1248 EHYSCMVDMLARAGELDIAIDLINQMP 1274 (1991)
Q Consensus 1248 ~~y~~Li~~l~r~G~~eeA~~l~~~m~ 1274 (1991)
..|.+++..+...+++.+|.+.|.++-
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 578899999999999999988877764
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=59.79 E-value=33 Score=35.89 Aligned_cols=106 Identities=17% Similarity=0.084 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHHHhcCCH------HHHHHHHHHhHHhcCCCCCHH-HHHHHHH------HHHHcCCHHHHHHHHHHCcc
Q 040435 1209 PNAVTTLSVLSACSHGGLV------EEGLSFFNSMVQDHGVEPALE-HYSCMVD------MLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1209 Pd~~T~~~LL~ac~~~G~~------e~A~~i~~~M~~~~gi~P~~~-~y~~Li~------~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
-|..+|-..+.-..+.|+. ++.+++|++.... +.|+.. +|..-|. .+...++.++|.++|+.+..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3666777777777777988 8888999988774 777531 1111111 12334788999999998854
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCch
Q 040435 1276 NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSA 1316 (1991)
Q Consensus 1276 ~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~ 1316 (1991)
..+-=+.+|-....--.++|++..|.+++.+++.+.|....
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 21112788888888788899999999999999999887644
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=58.39 E-value=73 Score=30.77 Aligned_cols=86 Identities=8% Similarity=-0.091 Sum_probs=62.2
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040435 721 SYIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARV 800 (1991)
Q Consensus 721 ~~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~ 800 (1991)
...++.-|-+-+...|- ...+.-.-+..+...|++++|..+.+.+..||...|-+|-.+ +.|-.+.+...+.+|..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35667777776666654 333333444556789999999999999999999999988765 67778888888878877
Q ss_pred cCCCCCHHHHH
Q 040435 801 AGFEPNNSILV 811 (1991)
Q Consensus 801 ~gi~Pd~~ty~ 811 (1991)
+| .|...+|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 76 34333443
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.87 E-value=2.3e+02 Score=34.49 Aligned_cols=161 Identities=10% Similarity=-0.014 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccC--------CCHhHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHH----
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISR--------KNIVSWSAMVAAYGMN-GLAHEALALVAEMKLGGLQPNAVTT---- 1214 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~--------~d~~s~n~LI~ay~~~-G~~~eAl~lf~eM~~~Gi~Pd~~T~---- 1214 (1991)
...|...|.+.|+.++...++..... +....-..||..+... +..+.-+++..+..+-. +-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 34577888888888888888877653 2344566677776653 33444444444443211 0111233
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHCccC---CCCCHHHHH
Q 040435 1215 --LSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA----LEHYSCMVDMLARAGELDIAIDLINQMPDN---LKATASAWG 1285 (1991)
Q Consensus 1215 --~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~----~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~---~~pd~~~~~ 1285 (1991)
.-+..-|...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+.... +.+++.+-.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 24667778888888888888888765322112 466777788888888888888887766431 224443332
Q ss_pred HH----HHHHH-HcCChhHHHHHHHHHHh
Q 040435 1286 AL----LSACR-SYGNTELGAGATSRILE 1309 (1991)
Q Consensus 1286 ~L----l~a~~-~~g~~e~A~~~~e~lle 1309 (1991)
.+ +-.+. ..+++..|-..|-+.++
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 22 22234 56788888777766654
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.60 E-value=76 Score=30.70 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=60.9
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 040435 721 SYIHGRLVHACLVKQGYESFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARV 800 (1991)
Q Consensus 721 ~~~~a~~i~~~~lk~g~~~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~ 800 (1991)
...++.-|-+-+...|- ...+.-.-+..+...|++++|..+.+.+..||...|-+|-.+ +.|-.+.+...+.+|..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 35677777777766664 333333444556789999999999999999999999998765 55667777777777776
Q ss_pred cCCCCCHHHHH
Q 040435 801 AGFEPNNSILV 811 (1991)
Q Consensus 801 ~gi~Pd~~ty~ 811 (1991)
+| .|...+|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 33333443
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.68 E-value=61 Score=33.55 Aligned_cols=75 Identities=9% Similarity=0.139 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHCccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHH
Q 040435 1244 EPALEHYSCMVDMLARAGEL---DIAIDLINQMPDNLK-ATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGY 1318 (1991)
Q Consensus 1244 ~P~~~~y~~Li~~l~r~G~~---eeA~~l~~~m~~~~~-pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~y 1318 (1991)
.|+..+--.+..+|.+..+. .+++.++++.....+ -......-|.-++.+.|+++.|.+..+.+++.+|+|..+-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 45666666666677776644 356666666543211 1334555667789999999999999999999999986543
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=53.96 E-value=76 Score=42.16 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=44.4
Q ss_pred HHHhcCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1220 ACSHGGLVEEGLSFFNSMVQDHGVEPA-LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1220 ac~~~G~~e~A~~i~~~M~~~~gi~P~-~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
-|...|+++.|+++-++.+. ..|+ -.+|..|+..|.+.|+++.|+-.++.+|-
T Consensus 346 FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 35578899999999888876 5674 68899999999999999999999999983
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=52.98 E-value=55 Score=39.94 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhH----HhcCCCCCHHHH
Q 040435 1179 WSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMV----QDHGVEPALEHY 1250 (1991)
Q Consensus 1179 ~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~----~~~gi~P~~~~y 1250 (1991)
...++..+...|++++|+..+..+.... +-+...+..++.++...|+..+|++.|+.+. ++.|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 3445666677777887777777776532 3467777778888888888888877777653 346777775543
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=52.92 E-value=3.5e+02 Score=32.07 Aligned_cols=133 Identities=16% Similarity=0.046 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHH
Q 040435 743 IGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWF----YKARVAGFEPNNSILVLVIQACR 818 (1991)
Q Consensus 743 ~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf----~~M~~~gi~Pd~~ty~~lL~a~~ 818 (1991)
.+-++..-|.+.+++++|..++-. -...+.+.|....|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 344556668888999998887632 122456677777666655 44456788888888888887777
Q ss_pred hcCChH-----HHHHHHHHHHHhC--CCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 040435 819 CLGAYY-----EGLQVHGYIIRSG--LWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSA 886 (1991)
Q Consensus 819 ~~g~~~-----~a~~l~~~~~k~G--~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G 886 (1991)
....-+ ...+...+-.+.| ..-|......+-..|.+ +++.+|+.-|-.-..+....+..|+..+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 665321 1222233333444 33466677777777777 78888877773212222355555554444443
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=49.82 E-value=45 Score=34.96 Aligned_cols=114 Identities=8% Similarity=0.081 Sum_probs=79.9
Q ss_pred CCCHhHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH---hcCCHHHHHHHHHHhHH
Q 040435 1173 RKNIVSWSAMVAAYGMNGLA------HEALALVAEMKLGGLQPNAV----TTLSVLSACS---HGGLVEEGLSFFNSMVQ 1239 (1991)
Q Consensus 1173 ~~d~~s~n~LI~ay~~~G~~------~eAl~lf~eM~~~Gi~Pd~~----T~~~LL~ac~---~~G~~e~A~~i~~~M~~ 1239 (1991)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..|.--|+ ..+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45788999988888888988 8888899988763 677542 3444444333 45788999999999876
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHH
Q 040435 1240 DHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLS 1289 (1991)
Q Consensus 1240 ~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~ 1289 (1991)
. +-.- ...|-....--.|.|++..|.+++.+.....+.+.....+.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 4 2222 6667777777789999999999998876532323444444443
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=49.78 E-value=3.8e+02 Score=31.49 Aligned_cols=168 Identities=8% Similarity=0.017 Sum_probs=102.6
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhcCCCchhhhhHHHHhhhhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhh
Q 040435 1047 LNSLIDGYSKCHLVELAWKLFNDVKKPDVVLWSTMIAGFTLCGRPREAIAV----FQEMNQAQEKPNAITIINLLEACSV 1122 (1991)
Q Consensus 1047 ~naLI~~y~k~G~l~~A~~lf~~m~~~d~~syn~LI~~y~~~g~~eeAl~l----f~~M~~~Gv~Pd~~T~~~lL~a~a~ 1122 (1991)
|.++..=|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.++.++..+...++.-+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 456667788889999998886432 2334556776555544 4555567888888887777766655
Q ss_pred ccChH-HHHHHHHHHH----Hhc--cccchhHHHHHHHHHHhcCCHHHHHHHHHhccCCCHhHHHHHHHHHHHc---CCH
Q 040435 1123 ATELS-SSKWAHGIAI----RRC--LAEEVAVGTAVVDMYAKCGAIEASRKAFDQISRKNIVSWSAMVAAYGMN---GLA 1192 (1991)
Q Consensus 1123 ~g~le-~a~~i~~~~~----k~g--~~~d~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d~~s~n~LI~ay~~~---G~~ 1192 (1991)
...-+ .-..+...++ +.| -..++.....+...|.+.|++.+|+..|-.-...+...+-.|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 32111 1122333333 332 2247788889999999999999999988643333555555555544444 444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 040435 1193 HEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQD 1240 (1991)
Q Consensus 1193 ~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~ 1240 (1991)
.++-- ..-.++|. |.-.|++..|..+|+...+.
T Consensus 185 ~e~dl--------------f~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAE--------------FFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHH--------------HHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 43321 12222332 34578888888888877554
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=48.35 E-value=1.3e+02 Score=42.38 Aligned_cols=124 Identities=9% Similarity=0.029 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHH
Q 040435 1214 TLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPA---LEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSA 1290 (1991)
Q Consensus 1214 ~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~---~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a 1290 (1991)
|.-++..+.+.|.++.+.++-...++..+-.++ ...|..+...+...|++++|...+-.++.. .--......|+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHHHHHHHHHHH
Confidence 444555555556666665555554443211111 124566666666666666666666655532 1123455555555
Q ss_pred HHHcCChh------------HHHHHH-HHHHhc-CCCC-chHHHHHHHHHHhCCCchhHHHHH
Q 040435 1291 CRSYGNTE------------LGAGAT-SRILEL-EAQN-SAGYLLASSMYAAGGLWVESSGTR 1338 (1991)
Q Consensus 1291 ~~~~g~~e------------~A~~~~-e~llel-~P~~-~~~yvlL~~lya~~G~~~ea~~vr 1338 (1991)
.+.+|..+ +.+.++ .++... ++.+ +..|-.|-..+...|++-.|+.+-
T Consensus 981 lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 981 LTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp HHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 44444332 222222 122222 3333 455667777788889999988754
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=46.86 E-value=64 Score=34.28 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1247 LEHYSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1247 ~~~y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
.+.---+...|.+.|+.++|+.+++.++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 34444456667777777777777777765
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.66 E-value=5e+02 Score=32.00 Aligned_cols=147 Identities=4% Similarity=0.027 Sum_probs=70.8
Q ss_pred CChhHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCCCchHHHHHHHH----HHhh-
Q 040435 786 GTLGEGLWWFYKARV-----AGFEPNNSILVLVIQACRCLGAYYEGLQVHGYIIR-SGLWAVHSVQNSVLS----MYVD- 854 (1991)
Q Consensus 786 g~~~~Al~lf~~M~~-----~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~~k-~G~~~d~~v~naLi~----~yak- 854 (1991)
|++.+|++.+-.+.+ .+..-.......++..|...++++........+.+ +|.... ....++. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 455566655544432 12333455666777777777777766555554443 222111 1122222 2211
Q ss_pred C--CHHHHHHHHHhcCC----C------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCCC---HHHHHHHHHHH
Q 040435 855 A--DMECARKLFDEMCE----R------DVISWSVMIGGYVQSAEAFSGLRLFRQMVSG-FKNEPD---GQSLVSVLKAC 918 (1991)
Q Consensus 855 g--~~e~A~~vf~~m~~----~------d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~-~gv~Pd---~~T~~~lL~a~ 918 (1991)
. +.+.-..+.+.... + .......|...|-..|++.+|.+++.++..+ .|.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 1 12222223322211 1 1122345667777888888888888887643 111111 12344445555
Q ss_pred HccCChHHHHHHHHHH
Q 040435 919 TNLRDLTMGRMVHGLV 934 (1991)
Q Consensus 919 ~~~g~~~~a~~l~~~m 934 (1991)
...+++..|..+...+
T Consensus 188 l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 5566666665555543
No 259
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=45.60 E-value=2.1e+02 Score=32.91 Aligned_cols=136 Identities=10% Similarity=-0.056 Sum_probs=73.4
Q ss_pred cchhhhHHHHhh------cccccCCCeEEEeeCCEeEecCCchhhccCCCCCeeEeeccchhhhccccccccCCCccccC
Q 040435 478 YLSMLNHLRFYL------PEVYPKLEKILFLDDDIVVQKDLTPLWSVDLHGMVNGAVETCKESFHRFDKYLNFSNPLISE 551 (1991)
Q Consensus 478 ~~s~~~y~Rl~i------p~llp~~dkvLyLD~Divv~~dl~~L~~~dl~~~~~aaV~d~~~~~~~~~~~~~~~~~~~~~ 551 (1991)
.|...++.|+-+ ..++.++|-+.++|+|+++.+++..= .| |..+|......-. ..-..+..-.+|.-.-
T Consensus 115 ~W~d~sm~Rm~~i~~~~~~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~-~~~~~fpYERrp~S~A 189 (289)
T 1o7q_A 115 RWQDISMMRMKTIGEHIVAHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYK-ADPNDFTYERRKESAA 189 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHHTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTT-SCGGGSCCCCCTTSTT
T ss_pred CCchhHHHHHHHHHHHHHHHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhC-CCCCCCCCCCCcCcee
Confidence 355555555542 33355699999999999999998532 22 4567776542111 0112222233444444
Q ss_pred CCC--CCCcccccceeEeehHHHHHhhHHHHHHHHHHh-chhccccccCCCCchhhhhc-c-cccccccccccc
Q 040435 552 NFS--PNACGWAFGMNMFDLKEWRKRNITGIYHYWQDA-NEDRTLWKLGTLPPGLITFY-N-LTYPLDRSWHVL 620 (1991)
Q Consensus 552 ~~~--~~~~yfNsGVll~nl~~wR~~~~~~~~~~~~~~-~~~~~~~~~~dqd~~n~~f~-~-~~~~L~~~wN~~ 620 (1991)
+++ ..+.|+-+|+.==...+..+ +++.++.-+.. ..+...-.+.|-.-+|-.|. + ..+.|+.+|..-
T Consensus 190 yIp~~eGdfYY~Ga~fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 190 YIPFGEGDFYYHAAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYFLLNKPTKILSPEYCWD 261 (289)
T ss_dssp CCCTTCCSCCEEEEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHSCCSEEECGGGSBC
T ss_pred eecCCCCCEEEEceeeCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHHHhhcCCCEEECHHHCCC
Confidence 444 44557777666444444433 44445444332 23333334556677886633 2 456788887643
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=44.83 E-value=1.5e+02 Score=28.93 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHCcc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHH
Q 040435 1262 ELDIAIDLINQMPD-NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLL 1340 (1991)
Q Consensus 1262 ~~eeA~~l~~~m~~-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~ 1340 (1991)
+.-++.+-++.+-. .+-|++.+..+.|.||++.+++..|.++++-+...-......|--+ ..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~------------lqElkPt 92 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPT 92 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH------------HHHHhhH
Confidence 44455555665543 3778999999999999999999999999998876544443333322 2356777
Q ss_pred HHHcCCc
Q 040435 1341 AKERGVK 1347 (1991)
Q Consensus 1341 m~~~gi~ 1347 (1991)
|.+.||.
T Consensus 93 l~ELGI~ 99 (109)
T 1v54_E 93 LNELGIS 99 (109)
T ss_dssp HHHHTCC
T ss_pred HHHhCCC
Confidence 7788873
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=42.68 E-value=99 Score=30.06 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1192 AHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1192 ~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++++.+..+ ..+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 3455666677777788999999999999999999999999999988665 3344556776664
No 262
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=40.52 E-value=2.5e+02 Score=36.56 Aligned_cols=84 Identities=11% Similarity=0.011 Sum_probs=46.6
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHHHHHHHh---
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQEKPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAVVDMYAK--- 1157 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naLI~~y~k--- 1157 (1991)
....+.-.|++|.|++.+.+. ...|.+.+...|..+.-.+- +..+...- .+ .+ ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445556689999999987754 35677777766666544332 11111110 01 11 2335678888876
Q ss_pred cCCHHHHHHHHHhccCCC
Q 040435 1158 CGAIEASRKAFDQISRKN 1175 (1991)
Q Consensus 1158 ~G~~e~A~~lf~~m~~~d 1175 (1991)
.++..+|.+.|--+..++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 577888888777664443
No 263
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=39.95 E-value=88 Score=33.69 Aligned_cols=18 Identities=39% Similarity=0.713 Sum_probs=16.6
Q ss_pred cccCCCeEEEeeCCEeEe
Q 040435 492 VYPKLEKILFLDDDIVVQ 509 (1991)
Q Consensus 492 llp~~dkvLyLD~Divv~ 509 (1991)
-+|+.+.+-|||+|.+|.
T Consensus 69 khPeAEWfWWLDsDAlIM 86 (213)
T 2p6w_A 69 KFPSTEWFLWLDSDVYVN 86 (213)
T ss_dssp HCTTCSEEEEECTTEEEC
T ss_pred HCCCceEEEEecCCceee
Confidence 368899999999999998
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=36.91 E-value=1.2e+02 Score=42.56 Aligned_cols=140 Identities=6% Similarity=-0.068 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHc
Q 040435 1181 AMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARA 1260 (1991)
Q Consensus 1181 ~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~ 1260 (1991)
.++..+...|+++-|.++..- ++-+...--.+..++...|++++|.++|.+.. .|+..+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhh----------
Confidence 466677778888777665433 23344443344566778889999999988762 3443321100
Q ss_pred CCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC-CCch----HHHHHHHHHHhCCCchhHH
Q 040435 1261 GELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTELGAGATSRILELEA-QNSA----GYLLASSMYAAGGLWVESS 1335 (1991)
Q Consensus 1261 G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P-~~~~----~yvlL~~lya~~G~~~ea~ 1335 (1991)
....+...+...-.. ...-..-|..++..+.++|..+.+.+.++.+++..+ +++. .|..+-+.+.+.|++++|-
T Consensus 880 ~~~~~~~~~~~~~~~-~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp SSHHHHHHHHHTTTS-CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred hhhcccccccccccc-cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 000111111111111 111223455555555566666666666666655432 2221 2333444555556666654
Q ss_pred HHH
Q 040435 1336 GTR 1338 (1991)
Q Consensus 1336 ~vr 1338 (1991)
...
T Consensus 959 ~aL 961 (1139)
T 4fhn_B 959 VAL 961 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.09 E-value=4.1e+02 Score=28.03 Aligned_cols=81 Identities=10% Similarity=-0.116 Sum_probs=42.0
Q ss_pred CchHHHHHHHHHHHhcCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 040435 739 SFTSIGNALMDFYMKWRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACR 818 (1991)
Q Consensus 739 ~d~~~~n~Li~~y~k~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~ 818 (1991)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+..+.. .++...-...+.+++
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 444444555555555555455555555555566555555555555555442 3333333332 245555555666666
Q ss_pred hcCCh
Q 040435 819 CLGAY 823 (1991)
Q Consensus 819 ~~g~~ 823 (1991)
..++.
T Consensus 102 ~~~~~ 106 (201)
T 3ltj_A 102 QIGDE 106 (201)
T ss_dssp HHCCG
T ss_pred HhCcH
Confidence 65554
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.38 E-value=6.5e+02 Score=30.08 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---HhHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 040435 1148 GTAVVDMYAKCGAIEASRKAFDQISRKN---IVSWSAMVAAYGMNGL--AHEALALVAEMKLGGLQPNAVTTLSVLSACS 1222 (1991)
Q Consensus 1148 ~naLI~~y~k~G~~e~A~~lf~~m~~~d---~~s~n~LI~ay~~~G~--~~eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~ 1222 (1991)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+...+++..+...|+-+.......+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~--- 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER--- 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH---
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH---
Confidence 3678888999999999999999998764 2345555556555433 3457778888887775543333222222
Q ss_pred hcCCHHHHHHHHHHhHHhcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHCcc
Q 040435 1223 HGGLVEEGLSFFNSMVQDHGVEPALEH-YSCMVDMLARAGELDIAIDLINQMPD 1275 (1991)
Q Consensus 1223 ~~G~~e~A~~i~~~M~~~~gi~P~~~~-y~~Li~~l~r~G~~eeA~~l~~~m~~ 1275 (1991)
..+.+..+.-+ .|.... ...++.-....|-+.. .++..|+.
T Consensus 297 -------vl~~ldDl~lD---iP~A~~~la~~varai~~g~l~~--~f~~~~p~ 338 (358)
T 3eiq_C 297 -------IYNEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QLRDLCPS 338 (358)
T ss_dssp -------HHHHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCC
T ss_pred -------HHHhccHhhcc---cccHHHHHHHHHHHHHHCCCCCH--HHHHhCcc
Confidence 22233333222 355433 3444444455555443 45666654
No 267
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=35.11 E-value=56 Score=27.56 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhh
Q 040435 222 LMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRA 259 (1991)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1991)
=|.+|+.+.+.|.--||+.+..+=..-|..|++|-+..
T Consensus 6 PL~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~e 43 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 37899999999999999999997677888888875543
No 268
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=33.62 E-value=8.9e+02 Score=31.18 Aligned_cols=433 Identities=9% Similarity=-0.017 Sum_probs=208.8
Q ss_pred ccCCChHHHHHhhhhhccccCCCCCcchHHHHHHHHhccchhhHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCchHH
Q 040435 682 SKNGKWQELFSHYHETKKVVVDLNDPSVYPLVVKACSNLSYIHGRLVHACLVKQG-YESFTSIGNALMDFYMKWRFPDSA 760 (1991)
Q Consensus 682 ~~~g~~~~Al~lf~~M~~~g~~p~~~~~~~~lL~ac~~~~~~~a~~i~~~~lk~g-~~~d~~~~n~Li~~y~k~G~~~~A 760 (1991)
.++|++..+..+-..|....+.| -..|..+...... ....++...+.+.. .+.....-+.-+..+.+.++...-
T Consensus 17 ~~~~~~~~~~~l~~~l~~~pL~~--yl~y~~l~~~l~~---~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNRQMDVVEQMMPGLKDYPLYP--YLEYRQITDDLMN---QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTTCHHHHHHHSGGGTTSTTHH--HHHHHHHHHTGGG---CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCCCHHHHHHHHHhhcCCCcHH--HHHHHHHHhCccc---CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 46788877777766663322111 1122222221111 12345666665543 222334445566677788888888
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHHHhC-
Q 040435 761 VAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYE--GLQVHGYIIRSG- 837 (1991)
Q Consensus 761 ~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~--a~~l~~~~~k~G- 837 (1991)
...+.. +..+...--....+....|+..+|....+.+-..|-. .......++..+.+.|.+.. ..+=...+...|
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~ 169 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN 169 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Confidence 887766 4335554555667778889988888888777665532 22345566666665543322 111112222222
Q ss_pred ----------CCCc-hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhCCC
Q 040435 838 ----------LWAV-HSVQNSVLSMYVDADMECARKLFDEMCERDVI---SWSVMIGGYVQSAEAFSGLRLFRQMVSGFK 903 (1991)
Q Consensus 838 ----------~~~d-~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~---syn~LI~a~~~~G~~~eAl~lf~~M~~~~g 903 (1991)
+.++ ......++..+.+ ...+....... .++.. .+...+.-+.+. +.+.|..+|....+...
T Consensus 170 ~~~a~~l~~~l~~~~~~~a~~~~al~~~--p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~ 245 (618)
T 1qsa_A 170 TGLVTVLAGQMPADYQTIASAIISLANN--PNTVLTFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQ 245 (618)
T ss_dssp HHHHHHHHHTCCGGGHHHHHHHHHHHHC--GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhC--hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccC
Confidence 1111 1112222222222 11111111111 11111 111223333443 77899999988865422
Q ss_pred CCCCHHHHHHHHHH----HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCC--HhHH
Q 040435 904 NEPDGQSLVSVLKA----CTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKN--KVSW 977 (1991)
Q Consensus 904 v~Pd~~T~~~lL~a----~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~d--v~s~ 977 (1991)
. +......+-.. ....+....+...+....... .+.....-.+....+.|+++.|...|+.|.... ..-|
T Consensus 246 ~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~ 321 (618)
T 1qsa_A 246 L--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEW 321 (618)
T ss_dssp C--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHH
T ss_pred C--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhH
Confidence 3 33333323322 233342445555555544433 333334445555567899999999999998632 1222
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCC---chhh---hhhH
Q 040435 978 N-SALSGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFES---NELV---LNSL 1050 (1991)
Q Consensus 978 n-~LI~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~---d~~v---~naL 1050 (1991)
. =+..++.+.|+.++|..+|..+... .+|-.++.+ .++|..-.. .. ....+ .... .-..
T Consensus 322 ~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~-~~------~~~~~~~~~~~~~~~~~~r 387 (618)
T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL-KI------DKAPQNVDSALTQGPEMAR 387 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC-CC------CCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC-CC------CCCChhHHhhhccChHHHH
Confidence 1 1334667889999999999998642 244444432 222211000 00 00000 0000 1122
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC-CchhhhhHHHHhhhhcCChHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhccC
Q 040435 1051 IDGYSKCHLVELAWKLFNDVKK-PDVVLWSTMIAGFTLCGRPREAIAVFQEMNQAQE----KPNAITIINLLEACSVATE 1125 (1991)
Q Consensus 1051 I~~y~k~G~l~~A~~lf~~m~~-~d~~syn~LI~~y~~~g~~eeAl~lf~~M~~~Gv----~Pd~~T~~~lL~a~a~~g~ 1125 (1991)
+..+...|....|...+..+.+ .+....-.+.....+.|..+.++.........+. -|. .|...+...+..-.
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~--~y~~~i~~~a~~~g 465 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL--AYNDLFKRYTSGKE 465 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC--TTHHHHHHHHTTSS
T ss_pred HHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc--chHHHHHHHHHHcC
Confidence 4456677888888877776643 2322222333333456666666654443322110 011 23444555554444
Q ss_pred hHHHHHHHHHHHHhccccch
Q 040435 1126 LSSSKWAHGIAIRRCLAEEV 1145 (1991)
Q Consensus 1126 le~a~~i~~~~~k~g~~~d~ 1145 (1991)
++...-.--...++++.|..
T Consensus 466 v~~~ll~Ai~~~ES~f~p~a 485 (618)
T 1qsa_A 466 IPQSYAMAIARQESAWNPKV 485 (618)
T ss_dssp SCHHHHHHHHHHHHTTCTTC
T ss_pred CCHHHHHHHHHHhCCCCCCC
Confidence 44433222233456666554
No 269
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=33.15 E-value=61 Score=28.11 Aligned_cols=39 Identities=26% Similarity=0.214 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhh
Q 040435 221 KLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRA 259 (1991)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1991)
.-|.+||.+.+.|.--||+.+..+=..-|..|++|-+..
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~e 50 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHT 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 368899999999999999999998777888888886543
No 270
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=32.94 E-value=72 Score=32.35 Aligned_cols=83 Identities=5% Similarity=-0.222 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCChhH---HHHHHHHHHhcC-C-CCchHHHHHHHHHHhCCCchhH
Q 040435 1260 AGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNTEL---GAGATSRILELE-A-QNSAGYLLASSMYAAGGLWVES 1334 (1991)
Q Consensus 1260 ~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~e~---A~~~~e~llel~-P-~~~~~yvlL~~lya~~G~~~ea 1334 (1991)
...+..+.+-+.+......++..+--.+..++....+... |+.+++.+++.+ | ..-...+.|+..|++.|++++|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3344455555554433234777787888888888776655 889999988876 5 3456678899999999999999
Q ss_pred HHHHHHHH
Q 040435 1335 SGTRLLAK 1342 (1991)
Q Consensus 1335 ~~vr~~m~ 1342 (1991)
.+.-..+-
T Consensus 94 ~~~~~~lL 101 (126)
T 1nzn_A 94 LKYVRGLL 101 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98666543
No 271
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=32.82 E-value=63 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhh
Q 040435 223 MRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQR 258 (1991)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (1991)
|.+|+.+.+.|..-||+.+..+=..-|..|++|-++
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~ 41 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMH 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 689999999999999999998767788888888654
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=32.81 E-value=6.8e+02 Score=29.59 Aligned_cols=87 Identities=10% Similarity=-0.021 Sum_probs=52.5
Q ss_pred CCCCCHHHHHHHHHHHHccCChH-----HHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHh
Q 040435 903 KNEPDGQSLVSVLKACTNLRDLT-----MGRMVHGLVIYRG--LGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKV 975 (1991)
Q Consensus 903 gv~Pd~~T~~~lL~a~~~~g~~~-----~a~~l~~~m~k~g--~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~ 975 (1991)
++.+|..+...++..+.....-+ ...+...+-.+.| ..-|+.....+-..|.+.+++.+|+.-|-.-..++..
T Consensus 89 ~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~ 168 (336)
T 3lpz_A 89 GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPE 168 (336)
T ss_dssp TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHH
Confidence 56677766666666665544321 2223334444444 3347778888889999999999999888532223345
Q ss_pred HHHHHHHHHHhcCC
Q 040435 976 SWNSALSGLVVNEK 989 (1991)
Q Consensus 976 s~n~LI~a~~~~g~ 989 (1991)
.+..|+..+.+.+.
T Consensus 169 ~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 169 VLARMEYEWYKQDE 182 (336)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcC
Confidence 66555555544443
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=31.23 E-value=2.7e+02 Score=28.49 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=50.0
Q ss_pred HHHHHHHHCcc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHHHhCCCchhHHHHHHHHHH
Q 040435 1265 IAIDLINQMPD-NLKATASAWGALLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMYAAGGLWVESSGTRLLAKE 1343 (1991)
Q Consensus 1265 eA~~l~~~m~~-~~~pd~~~~~~Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~lya~~G~~~ea~~vr~~m~~ 1343 (1991)
|..+-++.+-. .+-|++.+..+.|.||++.+|+..|.++++-+...-.+....|--+ ..+++-.+.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~------------lqElkPtl~E 138 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV------------IQELRPTLNE 138 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHH------------HHHHhhHHHH
Confidence 44444554433 2779999999999999999999999999998876543333333322 2367777778
Q ss_pred cCCc
Q 040435 1344 RGVK 1347 (1991)
Q Consensus 1344 ~gi~ 1347 (1991)
.||.
T Consensus 139 LGI~ 142 (152)
T 2y69_E 139 LGIS 142 (152)
T ss_dssp HTCC
T ss_pred hCCC
Confidence 8873
No 274
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=30.84 E-value=3.8e+02 Score=25.99 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=59.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040435 820 LGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMV 899 (1991)
Q Consensus 820 ~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~ 899 (1991)
....++|..|-+.+...|- ...++.-.+.+.--+|++++|..+.+.++-||.+.|-++-.+ +.|...++..-+.++.
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3456777777777776664 222222223333334999999999999999999999888654 7788888877777776
Q ss_pred hCCCCCCCHHHHH
Q 040435 900 SGFKNEPDGQSLV 912 (1991)
Q Consensus 900 ~~~gv~Pd~~T~~ 912 (1991)
.. -.|....|.
T Consensus 96 ~s--g~p~~q~Fa 106 (115)
T 2uwj_G 96 GS--SDPALADFA 106 (115)
T ss_dssp TC--SSHHHHHHH
T ss_pred hC--CCHHHHHHH
Confidence 54 244444443
No 275
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=30.52 E-value=1.8e+02 Score=29.84 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 040435 1194 EALALVAEMKLGGLQPNAVTTLSVLSACSHGGLVEEGLSFFNSMVQDHGVEPALEHYSCMVD 1255 (1991)
Q Consensus 1194 eAl~lf~eM~~~Gi~Pd~~T~~~LL~ac~~~G~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~ 1255 (1991)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.+..+ ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45555666677789999999999999999999999999999988665 4444566777664
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=30.28 E-value=3.9e+02 Score=25.95 Aligned_cols=88 Identities=11% Similarity=0.050 Sum_probs=58.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 040435 820 LGAYYEGLQVHGYIIRSGLWAVHSVQNSVLSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMV 899 (1991)
Q Consensus 820 ~g~~~~a~~l~~~~~k~G~~~d~~v~naLi~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~ 899 (1991)
....++|..|-+.+...|- ...++.-.+.+.--+|++++|..+.+.++-||.+.|-++-.+ +.|...++..-+.++.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3456777777777776664 222222223333334999999999999999999999888664 6687777777776775
Q ss_pred hCCCCCCCHHHHH
Q 040435 900 SGFKNEPDGQSLV 912 (1991)
Q Consensus 900 ~~~gv~Pd~~T~~ 912 (1991)
.. -.|....|.
T Consensus 97 ~s--g~p~~q~Fa 107 (116)
T 2p58_C 97 RS--QDPRIQTFV 107 (116)
T ss_dssp TC--CCHHHHHHH
T ss_pred hC--CCHHHHHHH
Confidence 53 244444443
No 277
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.02 E-value=67 Score=28.80 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHhhhh
Q 040435 221 KLMRDQIILAKAYAHVAKSKNESSLYNSLMKHCKESQRA 259 (1991)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (1991)
.=|.+||.+.+.|.--||+.+..+=..-|..|++|-++.
T Consensus 23 dPL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~e 61 (69)
T 1z0k_B 23 DPLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDE 61 (69)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 468899999999999999999998777888888886653
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.91 E-value=5.3e+02 Score=27.39 Aligned_cols=188 Identities=10% Similarity=-0.042 Sum_probs=0.0
Q ss_pred cCCchHHHHHHhhcCCCChHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 040435 754 WRFPDSAVAVFDDCICRDSVSWNIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCLGAYYEGLQVHGYI 833 (1991)
Q Consensus 754 ~G~~~~A~~lfd~m~~~d~~s~n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~g~~~~a~~l~~~~ 833 (1991)
.++.+....+...+..+|...-...+.++.+.|. .++...+.++... ++...-...+.+++..++.+....+...+
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-ERAVEPLIKALKD---EDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q ss_pred HHhCCCCchHHHHHHHHHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHH
Q 040435 834 IRSGLWAVHSVQNSVLSMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLV 912 (1991)
Q Consensus 834 ~k~G~~~d~~v~naLi~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~ 912 (1991)
-.++..+....+...++ ++.+....+.+.+..++...-...+.++.+.|. .+++..+..+... ++...-.
T Consensus 91 ----~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~ 161 (211)
T 3ltm_A 91 ----KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKALKD----EDGWVRQ 161 (211)
T ss_dssp ----TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-GGGHHHHHHHTTC----SSHHHHH
T ss_pred ----cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHcC----CCHHHHH
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 040435 913 SVLKACTNLRDLTMGRMVHGLVIYRGLGCDLFVGNSLIDMYAKCKD 958 (1991)
Q Consensus 913 ~lL~a~~~~g~~~~a~~l~~~m~k~g~~pd~~v~naLI~~y~k~G~ 958 (1991)
..+.++.+.+..+....+...+.. ++..+-...+.++.+.+.
T Consensus 162 ~a~~aL~~~~~~~~~~~L~~~l~d----~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 162 SAADALGEIGGERVRAAMEKLAET----GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHH----CCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhCchhHHHHHHHHHhC----CCHHHHHHHHHHHHhcCC
No 279
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=29.76 E-value=2.6e+02 Score=29.67 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=19.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCchHHHHHHHHH
Q 040435 1287 LLSACRSYGNTELGAGATSRILELEAQNSAGYLLASSMY 1325 (1991)
Q Consensus 1287 Ll~a~~~~g~~e~A~~~~e~llel~P~~~~~yvlL~~ly 1325 (1991)
+..++...|+.++|...++.+-. .-..+....+|+++|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred HHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 44455566777777665444311 122445555666665
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.81 E-value=8.8e+02 Score=29.30 Aligned_cols=39 Identities=5% Similarity=0.043 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHH
Q 040435 1243 VEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATAS 1282 (1991)
Q Consensus 1243 i~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~ 1282 (1991)
..|....+..|+.+| +.|++.+..++++.....+..|..
T Consensus 252 ~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~ 290 (394)
T 3txn_A 252 SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVI 290 (394)
T ss_dssp CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHH
T ss_pred CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChH
Confidence 345555566666654 567888888888877655555655
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.25 E-value=2.2e+02 Score=31.65 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=17.0
Q ss_pred HHHHHHHHHhccccchh--HHHHHHHHHHhcCCHHHHHHHHH
Q 040435 1130 KWAHGIAIRRCLAEEVA--VGTAVVDMYAKCGAIEASRKAFD 1169 (1991)
Q Consensus 1130 ~~i~~~~~k~g~~~d~~--v~naLI~~y~k~G~~e~A~~lf~ 1169 (1991)
..+...+.+.|..++.. .....+...++.|..+-+..+++
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34444555555443321 11122333444555555555544
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.63 E-value=8.5e+02 Score=28.42 Aligned_cols=160 Identities=12% Similarity=0.066 Sum_probs=87.6
Q ss_pred HHHhh-CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHHHccCC-
Q 040435 850 SMYVD-ADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLF----RQMVSGFKNEPDGQSLVSVLKACTNLRD- 923 (1991)
Q Consensus 850 ~~yak-g~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf----~~M~~~~gv~Pd~~T~~~lL~a~~~~g~- 923 (1991)
.-|.+ +++++|.+++..- ...+.+.|+...|-++- +-..+ .++.++..+...++..+.....
T Consensus 41 ~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~-~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 41 NRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDL-AEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCC
Confidence 33444 5666666654331 22334556655554432 22222 3677777777777666654321
Q ss_pred ----hHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHHhc---CCHHHHH
Q 040435 924 ----LTMGRMVHGLVIYRGL--GCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLVVN---EKYSEAL 994 (1991)
Q Consensus 924 ----~~~a~~l~~~m~k~g~--~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~~~---g~~~eAl 994 (1991)
.........+..+.|- .-|+.....+-..|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |...++-
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~d 188 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVA 188 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHH
Confidence 1223334444444432 247788889999999999999999988633323566666666555554 5554432
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHH
Q 040435 995 SLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVIL 1036 (1991)
Q Consensus 995 ~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~ 1036 (1991)
-.+-+. +|. +...+++..|..++....
T Consensus 189 lf~~Ra--------------VL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 189 EFFSRL--------------VFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHH--------------HHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHHHH--------------HHH-HHHhcCHHHHHHHHHHHH
Confidence 222222 222 234566666666665443
No 283
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=25.26 E-value=1.4e+03 Score=30.90 Aligned_cols=512 Identities=10% Similarity=-0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------CChHHHHHHHHHHHHhCCCCchHHHHHH
Q 040435 776 NIMIQGHLDHGTLGEGLWWFYKARVAGFEPNNSILVLVIQACRCL-------GAYYEGLQVHGYIIRSGLWAVHSVQNSV 848 (1991)
Q Consensus 776 n~LI~a~~~~g~~~~Al~lf~~M~~~gi~Pd~~ty~~lL~a~~~~-------g~~~~a~~l~~~~~k~G~~~d~~v~naL 848 (1991)
+.|+.-|.+.|...+|+.+.-+.++ .-+|.-+... .+........-.+...-..|+.+-...|
T Consensus 149 ~~iv~~cl~hnae~~AvdLalE~er----------LD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vL 218 (963)
T 4ady_A 149 ERMIEKCLKASELKLALGIALEGYR----------LDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSIL 218 (963)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhh----------HHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHH
Q ss_pred HHHHhhCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 040435 849 LSMYVDADMECARKLFDEMCERDVISWSVMIGGYVQSAEAFSGLRLFRQMVSGFKNEPDGQSLVSVLKACTNLRDLTMGR 928 (1991)
Q Consensus 849 i~~yakg~~e~A~~vf~~m~~~d~~syn~LI~a~~~~G~~~eAl~lf~~M~~~~gv~Pd~~T~~~lL~a~~~~g~~~~a~ 928 (1991)
.-+.++|.+++.|| |..++....+.++.+.+.++|..+... .|...--.+.--+.+.+.-..-.
T Consensus 219 ---------r~l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~~~----~d~l~ayQiAFdL~~~~~Q~fL~ 282 (963)
T 4ady_A 219 ---------RKSFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLKEE----NDEGLSAQIAFDLVSSASQQLLE 282 (963)
T ss_dssp ---------HHHHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHSCHHHHH
T ss_pred ---------HHHHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHhcccchHHHH
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHhccCCCCCHhHHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCC
Q 040435 929 MVHGLVIYRGLGCDLFVGNSLIDMYAKCKDTDSAFKVFSEMPQKNKVSWNSALSGLV--VNEKYSEALSLLYSMGKGVNE 1006 (1991)
Q Consensus 929 ~l~~~m~k~g~~pd~~v~naLI~~y~k~G~~e~A~~lf~~m~~~dv~s~n~LI~a~~--~~g~~~eAl~lf~~M~~~Gi~ 1006 (1991)
.+.+.+..... +..+.+...-..-.+-=...+.+....|..+-+.+ .... +.....-|..+.+-....|..
T Consensus 283 ~v~~~l~~~e~------~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~-K~~ld~r~s~~~~A~~f~Naf~naG~~ 355 (963)
T 4ady_A 283 ILVTELTAQGY------DPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKS-KSSLDGKFSLFHTAVSVANGFMHAGTT 355 (963)
T ss_dssp HHHHHHHHTTC------CHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHH-HHHSCTTSHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHhccccch------hHHHHHHhCCCChHHHHHHHHHhccccchhhHHHH-HhhhcchhhHHHHHHHHHHHHHhCCCC
Q ss_pred CCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHHhcCC------CchhhhhH
Q 040435 1007 VDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSKCHLVELAWKLFNDVKK------PDVVLWST 1080 (1991)
Q Consensus 1007 Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k~G~l~~A~~lf~~m~~------~d~~syn~ 1080 (1991)
-|.+.-.. +....+..++...-.+... +....|+.+++..+++.-.. +.+..=..
T Consensus 356 ~D~~l~~~-~~Wl~k~~~~~k~sA~aSL------------------GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAl 416 (963)
T 4ady_A 356 DNSFIKAN-LPWLGKAQNWAKFTATASL------------------GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSL 416 (963)
T ss_dssp CCHHHHHC-HHHHHHCCTHHHHHHHHHH------------------HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHH
T ss_pred cchhhhcc-hhhhhccchHHHHHHHHHh------------------hhhccCchHHHHHHHHHhccccCCCcHHHHHHHH
Q ss_pred HHHhhhhcCChHHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHhhccChHHHHHHHHHHHHhccccchhHHHHH
Q 040435 1081 MIAGFTLCGRPREAIAVFQEMNQAQE---------KPNAITIINLLEACSVATELSSSKWAHGIAIRRCLAEEVAVGTAV 1151 (1991)
Q Consensus 1081 LI~~y~~~g~~eeAl~lf~~M~~~Gv---------~Pd~~T~~~lL~a~a~~g~le~a~~i~~~~~k~g~~~d~~v~naL 1151 (1991)
+.-|.+..|..+++++++.......- ..-......|--++...++-+....+...+....-.......-+|
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalAL 496 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGM 496 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHhccC---CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcC
Q 040435 1152 VDMYAKCGAIEASRKAFDQISR---KNIVSWSAMVAAYGMNGLAHEALALVAEMKLGGLQPNAVTTL---SVLSACSHGG 1225 (1991)
Q Consensus 1152 I~~y~k~G~~e~A~~lf~~m~~---~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~~Gi~Pd~~T~~---~LL~ac~~~G 1225 (1991)
...|.-.|+-+....++..+.+ .++.-.-++.-|+...|+.+.+..+.+.+.. .....+-|. ++.-||+..|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA--SDESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHhcCCC
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCCHHHHHHHHHHHHHcCCh-hHHHHHH
Q 040435 1226 LVEEGLSFFNSMVQDHGVEPALEHYSCMVDMLARAGELDIAIDLINQMPDNLKATASAWGALLSACRSYGNT-ELGAGAT 1304 (1991)
Q Consensus 1226 ~~e~A~~i~~~M~~~~gi~P~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd~~~~~~Ll~a~~~~g~~-e~A~~~~ 1304 (1991)
+.....+++..+.++ ...++.-...+.-++.-.|+.+.+.++++.+.+...|...--.++.-+....|+. ..+...+
T Consensus 575 n~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHH
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhCCCchh----HHHHHHHHHH
Q 040435 1305 SRILELEAQNSAGYLLASSMYAAGGLWVE----SSGTRLLAKE 1343 (1991)
Q Consensus 1305 e~llel~P~~~~~yvlL~~lya~~G~~~e----a~~vr~~m~~ 1343 (1991)
.++..-.-+....-...+-.....|.-+. +..+++.+.+
T Consensus 653 ~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~ 695 (963)
T 4ady_A 653 DPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLS 695 (963)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHH
T ss_pred HHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=22.07 E-value=6.1e+02 Score=33.00 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=34.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCChhhHHHHHHHHHHhcCCCchhhhhhHHHHHHh---cC
Q 040435 982 SGLVVNEKYSEALSLLYSMGKGVNEVDEITLVNILQICKCFVHPMECKSVHCVILRRAFESNELVLNSLIDGYSK---CH 1058 (1991)
Q Consensus 982 ~a~~~~g~~~eAl~lf~~M~~~Gi~Pd~~T~~~lL~a~~~~g~~~~a~~i~~~~~~~g~~~d~~v~naLI~~y~k---~G 1058 (1991)
..+.-.|+++.|++.+.+. ...|.+.+...|..+.-++- ...+...- .+ .| ..-+..||..|.+ ..
T Consensus 302 ~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~t 370 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFRYS 370 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTT
T ss_pred HHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhhcC
Confidence 3444557777777766543 23455555555554433332 11111100 00 11 2225567777765 46
Q ss_pred CHHHHHHHHHhc
Q 040435 1059 LVELAWKLFNDV 1070 (1991)
Q Consensus 1059 ~l~~A~~lf~~m 1070 (1991)
+..+|...|--+
T Consensus 371 d~~~Al~Y~~li 382 (661)
T 2qx5_A 371 DPRVAVEYLVLI 382 (661)
T ss_dssp CHHHHHHHHHGG
T ss_pred CHHHHHHHHHHH
Confidence 677777666544
No 285
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.45 E-value=4.4e+02 Score=26.90 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHCccCCCCC
Q 040435 1206 GLQPNAVTTLSVLSACSHGGL---VEEGLSFFNSMVQDHGVEP--ALEHYSCMVDMLARAGELDIAIDLINQMPDNLKAT 1280 (1991)
Q Consensus 1206 Gi~Pd~~T~~~LL~ac~~~G~---~e~A~~i~~~M~~~~gi~P--~~~~y~~Li~~l~r~G~~eeA~~l~~~m~~~~~pd 1280 (1991)
+-.|+..|--.+..++.++.. ..+|+.+++.+.+. .| ..+..--|.-++.|.|++++|.++.+.+.+ ..|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~-~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE-HERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hCCC
Confidence 335566655555556666654 45678888777653 24 244555666778888888888888888776 3454
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=21.03 E-value=5.4e+02 Score=28.33 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=26.3
Q ss_pred cCChhhHHHHHHHHHHhcCCCchh--hhhhHHHHHHhcCCHHHHHHHHH
Q 040435 1022 FVHPMECKSVHCVILRRAFESNEL--VLNSLIDGYSKCHLVELAWKLFN 1068 (1991)
Q Consensus 1022 ~g~~~~a~~i~~~~~~~g~~~d~~--v~naLI~~y~k~G~l~~A~~lf~ 1068 (1991)
.++......+...+++.|..++.. ...+.+...++.|+.+.+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 444444456666667776655432 22344455556677766666665
No 287
>4ayl_A BOGT-metal-independent glycosyltransferase; histo-blood group enzyme; HET: EPE; 1.92A {Bacteroides ovatus} PDB: 4ayj_A*
Probab=20.84 E-value=8.9e+02 Score=27.21 Aligned_cols=120 Identities=10% Similarity=0.063 Sum_probs=55.4
Q ss_pred CCCeEEEeeCCEeEecCCchhhccCC-CCCeeEeeccchhhhcc--ccccccCCCccccCCCC--CCCcccccceeEeeh
Q 040435 495 KLEKILFLDDDIVVQKDLTPLWSVDL-HGMVNGAVETCKESFHR--FDKYLNFSNPLISENFS--PNACGWAFGMNMFDL 569 (1991)
Q Consensus 495 ~~dkvLyLD~Divv~~dl~~L~~~dl-~~~~~aaV~d~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~yfNsGVll~nl 569 (1991)
++|-+..+|+|+++.+++..=--+.. +|..+|.... .+.. ......-.+|.-.-+++ ..+-|+-+|+.==-.
T Consensus 87 evDyLf~~dvd~~F~~~vG~E~L~p~~~~~lva~lHp---~~y~~~~~~fpYERrp~S~AyIp~~eGdfYY~ga~fGG~~ 163 (246)
T 4ayl_A 87 ETDYLFFFNANLLFTSPIGKEILPPSDSNGLLGTMHP---GFYNKPNSEFTYERRDASTAYIPEGEGRYYYAGGLSGGCT 163 (246)
T ss_dssp HCSEEEEECTTEEECSCBCGGGSCCTTSCCEEEEBCG---GGC------------------------CCCBCSSEEEEEH
T ss_pred hCCEEEEEeCCceeeccCCHHHcccCCCCCEEEEech---hhhCCCcccCcccCCccccccccCCCCCeEEeeeecCCcH
Confidence 38999999999999999953222222 2445666543 2111 11122222333333444 233466555552223
Q ss_pred HHHHHhhHHHHHHHHHH-hchhccccccCCCCchhhhhc-ccccc-ccccccc
Q 040435 570 KEWRKRNITGIYHYWQD-ANEDRTLWKLGTLPPGLITFY-NLTYP-LDRSWHV 619 (1991)
Q Consensus 570 ~~wR~~~~~~~~~~~~~-~~~~~~~~~~~dqd~~n~~f~-~~~~~-L~~~wN~ 619 (1991)
.+..+ +++.++..+. ...+...-.+.|-.-+|-.|. ++... |+.+|+.
T Consensus 164 ~~vl~--Lt~~c~~~i~~D~~n~I~A~whDESHLNKYfl~~KP~~vLSPEY~w 214 (246)
T 4ayl_A 164 KAYLK--LCTTICSWVDRDATNHIIPIWHDESLINKYFLDNPPAITLSPAYLY 214 (246)
T ss_dssp HHHHH--HHHHHHHHHHHHHTTCSSCSCCHHHHHHHHHHHSCCSEEECGGGGE
T ss_pred HHHHH--HHHHHHHHHHHHHhCCceEeccchhHhHHHHHhCCCCeeeCHHHcC
Confidence 33322 4444444432 223333334566677887754 44444 8888864
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=20.84 E-value=3.7e+02 Score=29.05 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 040435 1050 LIDGYSKCHLVELAWKLFND 1069 (1991)
Q Consensus 1050 LI~~y~k~G~l~~A~~lf~~ 1069 (1991)
.+...++.|+.+-+..+++.
T Consensus 153 ~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 153 PLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 33444455555555555443
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.65 E-value=2.3e+02 Score=34.80 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC------CCHhHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHH
Q 040435 1147 VGTAVVDMYAKCGAIEASRKAFDQISR------KNIVSWSAMVAAYGMNGLAHEALALVAEMKL---GGLQPNAVTTLSV 1217 (1991)
Q Consensus 1147 v~naLI~~y~k~G~~e~A~~lf~~m~~------~d~~s~n~LI~ay~~~G~~~eAl~lf~eM~~---~Gi~Pd~~T~~~L 1217 (1991)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-.+|..+...+++..|...+++... .+-.|+...-.-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445677888889999999999888864 2345677778888888999998888887643 3323333221111
Q ss_pred --HHHHHhcCCHHHHHHHHHHhHHhcC
Q 040435 1218 --LSACSHGGLVEEGLSFFNSMVQDHG 1242 (1991)
Q Consensus 1218 --L~ac~~~G~~e~A~~i~~~M~~~~g 1242 (1991)
...+...+++..|.+.|-++...+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1123467889999888887766543
Done!