BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040436
(91 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q37896|LYS_BPB03 Lysozyme OS=Bacillus phage B103 GN=15 PE=3 SV=1
Length = 263
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 35 ETSPPTCDSV--YGAQEGDTCSNVTEEFNLSTDVFLAINPNI-NCDAIFVGQWLCVAGS 90
ETS P + ++GDT S + ++ ST L +NP I N + I+VGQ + V GS
Sbjct: 153 ETSKPKTSKTNTHVVKKGDTLSEIAKKIKTSTKTLLELNPTIKNPNKIYVGQRINVGGS 211
>sp|Q5WC42|YKUD_BACSK Putative L,D-transpeptidase YkuD OS=Bacillus clausii (strain
KSM-K16) GN=ABC3535 PE=3 SV=1
Length = 165
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 45 YGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAG 89
+ Q+G+T S++ ++ +S + NP IN + +FVGQ + + G
Sbjct: 4 HSVQQGETLSSIAADYRISLSHLIQANPTINPNQLFVGQSIVIPG 48
>sp|P07540|LYS_BPPZA Lysozyme OS=Bacillus phage PZA GN=15 PE=3 SV=1
Length = 258
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 36 TSPPTCDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNI-NCDAIFVGQWLCVAGSA 91
TS Y + GD + + ++ N + L +NP+I + + I VGQ + V GS
Sbjct: 154 TSSSKVTPKYKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINVTGSG 210
>sp|P11187|LYS_BPPH2 Lysozyme OS=Bacillus phage phi29 GN=15 PE=3 SV=1
Length = 258
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 36 TSPPTCDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNI-NCDAIFVGQWLCVAGSA 91
TS Y + GD + + ++ N + L +NP+I + + I VGQ + V GS
Sbjct: 154 TSSTKTTPKYKVKSGDNLTKIAKKHNTTVATLLKLNPSIKDPNMIRVGQTINVTGSG 210
>sp|B3QBY0|RL3_RHOPT 50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplC PE=3 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 58 EEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
EEF +S D L + I D VGQ++ V G++
Sbjct: 81 EEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTS 114
>sp|P60456|RL3_RHOPA 50S ribosomal protein L3 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rplC PE=1 SV=1
Length = 241
Score = 32.3 bits (72), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 58 EEFNLSTDVFLAINPNINCDAIFVGQWLCVAGSA 91
EEF +S D L + I D VGQ++ V G++
Sbjct: 81 EEFRVSEDALLPVGAEIQADHFVVGQFVDVTGTS 114
>sp|O34816|YKUD_BACSU Putative L,D-transpeptidase YkuD OS=Bacillus subtilis (strain
168) GN=ykuD PE=1 SV=1
Length = 164
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 45 YGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAG 89
Y ++GDT +++ +F +ST L NP++ + GQ + + G
Sbjct: 4 YQVKQGDTLNSIAADFRISTAALLQANPSLQA-GLTAGQSIVIPG 47
>sp|Q65K99|YKUD_BACLD Putative L,D-transpeptidase YkuD OS=Bacillus licheniformis
(strain DSM 13 / ATCC 14580) GN=BLi01617 PE=3 SV=1
Length = 165
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 22/46 (47%)
Query: 44 VYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAG 89
+Y + G+T ++ +F + L NP +N + GQ + + G
Sbjct: 3 MYQVKPGETLESIAADFRTTRQALLQANPGLNGGQVSAGQSIIIPG 48
>sp|Q5L545|SYK_CHLAB Lysine--tRNA ligase OS=Chlamydophila abortus (strain S26/3) GN=lysS
PE=3 SV=1
Length = 526
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 32 GGLETSPPTCDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVG 82
G +E P +VYG E +T L ++VFL I+P I+ I VG
Sbjct: 210 GFIEVETPILQNVYGGAEATPF--ITMLNALHSEVFLRISPEISLKKILVG 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,630,744
Number of Sequences: 539616
Number of extensions: 912992
Number of successful extensions: 2151
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 16
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)