Query 040436
Match_columns 91
No_of_seqs 114 out of 1118
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 13:25:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040436.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040436hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e0g_A Membrane-bound lytic mu 99.5 1.7E-14 5.7E-19 77.0 4.9 45 43-89 3-47 (48)
2 2djp_A Hypothetical protein SB 99.4 1.5E-13 5E-18 80.3 3.9 48 43-90 16-63 (77)
3 2l9y_A CVNH-LYSM lectin; carbo 99.4 6E-13 2E-17 88.4 5.1 50 41-90 61-110 (167)
4 4eby_A Chitin elicitor recepto 99.2 1.2E-11 4E-16 84.9 6.1 51 39-89 3-65 (212)
5 4eby_A Chitin elicitor recepto 99.2 4.1E-11 1.4E-15 82.1 5.7 46 43-89 79-127 (212)
6 4a1k_A Putative L, D-transpept 99.0 5.8E-10 2E-14 73.7 5.1 46 43-89 3-48 (165)
7 2gu1_A Zinc peptidase; alpha/b 98.6 2.5E-08 8.5E-13 72.6 2.8 48 42-89 7-58 (361)
8 2gu1_A Zinc peptidase; alpha/b 97.7 1.8E-05 6E-10 57.6 3.4 45 44-88 102-151 (361)
9 3slu_A M23 peptidase domain pr 97.2 0.00047 1.6E-08 50.5 5.5 47 42-88 14-64 (371)
10 2glo_A Brinker CG9653-PA; prot 87.4 0.36 1.2E-05 25.5 2.1 24 48-71 19-46 (59)
11 2l9y_A CVNH-LYSM lectin; carbo 86.8 0.0023 7.8E-08 42.0 -8.4 34 41-74 124-157 (167)
12 2jn6_A Protein CGL2762, transp 82.3 0.92 3.1E-05 26.0 2.4 22 50-71 23-44 (97)
13 1jko_C HIN recombinase, DNA-in 82.0 1.2 4E-05 21.9 2.5 25 47-71 18-42 (52)
14 2jrt_A Uncharacterized protein 81.9 1.5 5E-05 26.0 3.2 28 47-74 46-73 (95)
15 2elh_A CG11849-PA, LD40883P; s 81.2 1.3 4.6E-05 25.1 2.8 23 48-70 36-58 (87)
16 2lfc_A Fumarate reductase, fla 80.6 1 3.5E-05 28.6 2.4 27 46-72 91-121 (160)
17 1tc3_C Protein (TC3 transposas 80.4 1.7 5.7E-05 20.9 2.8 23 48-70 19-41 (51)
18 2rn7_A IS629 ORFA; helix, all 69.9 1.5 5E-05 25.6 0.9 21 50-70 30-50 (108)
19 2x48_A CAG38821; archeal virus 66.8 6.1 0.00021 19.8 2.9 23 48-70 29-51 (55)
20 1pdn_C Protein (PRD paired); p 62.7 6.3 0.00021 22.7 2.8 23 48-70 31-53 (128)
21 1k78_A Paired box protein PAX5 60.2 7.1 0.00024 23.7 2.8 23 48-70 46-68 (149)
22 2k5e_A Uncharacterized protein 59.1 7.9 0.00027 21.5 2.6 23 49-71 39-62 (73)
23 1u78_A TC3 transposase, transp 55.9 9.4 0.00032 22.5 2.8 23 48-70 20-42 (141)
24 2oa4_A SIR5; structure, struct 54.7 5.2 0.00018 24.0 1.4 27 46-72 46-72 (101)
25 2k53_A A3DK08 protein; NESG, C 54.6 12 0.0004 21.0 2.8 24 48-71 36-60 (76)
26 1ku3_A Sigma factor SIGA; heli 52.0 16 0.00055 19.4 3.1 21 49-69 29-49 (73)
27 2p7v_B Sigma-70, RNA polymeras 50.2 17 0.00059 19.0 3.0 21 48-68 23-43 (68)
28 1rr7_A Middle operon regulator 50.1 13 0.00045 22.8 2.8 21 49-69 91-111 (129)
29 2o8x_A Probable RNA polymerase 49.7 17 0.0006 18.7 3.0 22 48-69 29-50 (70)
30 2ao9_A Phage protein; structur 48.5 16 0.00055 23.4 3.1 24 49-72 47-70 (155)
31 1neq_A DNA-binding protein NER 48.2 18 0.00061 19.8 2.9 23 48-70 20-42 (74)
32 1fse_A GERE; helix-turn-helix 43.6 24 0.00081 18.3 2.9 21 48-68 24-44 (74)
33 4dyq_A Gene 1 protein; GP1, oc 43.6 14 0.00046 22.8 2.1 26 45-70 23-49 (140)
34 1tty_A Sigma-A, RNA polymerase 42.0 27 0.00092 19.3 3.1 20 49-68 37-56 (87)
35 2k27_A Paired box protein PAX- 40.8 16 0.00055 22.3 2.1 24 48-71 39-62 (159)
36 4abx_A DNA repair protein RECN 40.4 18 0.00062 23.0 2.4 20 51-70 132-151 (175)
37 2ga1_A Protein of unknown func 39.7 29 0.00098 20.8 3.0 23 47-69 61-84 (106)
38 2zp2_A Kinase A inhibitor; KIP 39.3 29 0.001 21.8 3.2 27 47-73 11-37 (141)
39 1x3u_A Transcriptional regulat 38.7 36 0.0012 17.9 3.2 21 48-68 29-49 (79)
40 3i71_A Ethanolamine utilizatio 38.5 24 0.0008 19.3 2.2 20 47-66 15-34 (68)
41 2jpc_A SSRB; DNA binding prote 38.4 25 0.00087 17.6 2.4 21 48-68 11-31 (61)
42 2fcw_A Alpha-2-macroglobulin r 36.6 27 0.00092 21.2 2.5 19 52-70 11-29 (109)
43 2fi0_A Conserved domain protei 36.5 29 0.001 19.3 2.6 24 48-71 47-71 (81)
44 1hlv_A CENP-B, major centromer 36.0 20 0.0007 21.0 2.0 23 48-70 22-45 (131)
45 2xi8_A Putative transcription 35.1 36 0.0012 16.9 2.7 23 48-70 12-34 (66)
46 3qwg_A ESX-1 secretion-associa 34.7 14 0.00046 22.4 1.0 20 50-69 59-78 (123)
47 1je8_A Nitrate/nitrite respons 34.6 38 0.0013 18.4 2.9 22 47-68 33-54 (82)
48 1frr_A Ferredoxin I; electron 33.9 42 0.0014 18.7 3.0 22 43-64 13-34 (95)
49 1j9i_A GPNU1 DBD;, terminase s 33.7 35 0.0012 17.9 2.5 21 52-72 4-24 (68)
50 3bs3_A Putative DNA-binding pr 33.4 40 0.0014 17.3 2.8 26 45-70 18-43 (76)
51 1whz_A Hypothetical protein; a 33.4 29 0.001 18.5 2.2 18 52-69 52-69 (70)
52 2pij_A Prophage PFL 6 CRO; tra 33.2 37 0.0013 17.3 2.6 24 46-70 10-33 (67)
53 3b7h_A Prophage LP1 protein 11 32.8 41 0.0014 17.4 2.8 19 53-71 53-71 (78)
54 3bd1_A CRO protein; transcript 32.6 39 0.0013 17.9 2.7 21 49-70 11-31 (79)
55 2ofy_A Putative XRE-family tra 32.2 21 0.00073 19.2 1.5 21 51-71 58-78 (86)
56 1gdt_A GD resolvase, protein ( 32.0 39 0.0013 21.2 3.0 23 48-70 156-178 (183)
57 1frd_A Heterocyst [2Fe-2S] fer 31.4 44 0.0015 18.8 2.9 23 43-65 16-38 (98)
58 3r1f_A ESX-1 secretion-associa 31.3 15 0.0005 22.6 0.7 20 50-69 61-80 (135)
59 4at0_A 3-ketosteroid-delta4-5a 31.0 19 0.00066 26.3 1.5 23 50-72 385-411 (510)
60 1zug_A Phage 434 CRO protein; 31.0 45 0.0016 16.8 2.7 21 50-70 16-36 (71)
61 1r69_A Repressor protein CI; g 30.8 46 0.0016 16.6 2.7 21 50-70 14-34 (69)
62 2b5a_A C.BCLI; helix-turn-heli 30.4 48 0.0016 17.1 2.8 21 50-70 23-43 (77)
63 2r1j_L Repressor protein C2; p 30.3 50 0.0017 16.4 2.8 23 48-70 16-38 (68)
64 1y7y_A C.AHDI; helix-turn-heli 30.2 48 0.0017 16.8 2.8 23 48-70 24-46 (74)
65 3qq6_A HTH-type transcriptiona 30.1 48 0.0016 17.6 2.8 27 45-71 18-44 (78)
66 2l32_A Small archaeal modifier 29.9 26 0.00089 19.3 1.6 44 44-87 14-59 (74)
67 3slu_A M23 peptidase domain pr 29.2 1.4E+02 0.0049 21.4 5.8 40 49-88 116-159 (371)
68 2r0q_C Putative transposon TN5 29.2 46 0.0016 21.4 3.0 23 48-70 173-195 (209)
69 3hug_A RNA polymerase sigma fa 29.2 54 0.0018 18.0 3.0 21 48-68 51-71 (92)
70 3omt_A Uncharacterized protein 28.9 64 0.0022 16.5 3.1 27 45-71 16-42 (73)
71 1y0p_A Fumarate reductase flav 28.8 28 0.00094 25.9 2.0 26 47-72 441-470 (571)
72 3ggy_A Increased sodium tolera 28.3 38 0.0013 22.4 2.4 18 52-69 172-189 (193)
73 2wlb_A ETP1-FD, electron trans 28.2 57 0.0019 18.5 3.0 22 43-64 16-37 (103)
74 3c19_A Uncharacterized protein 28.2 25 0.00085 23.3 1.5 19 51-69 138-156 (186)
75 3ah7_A [2Fe-2S]ferredoxin; [2F 27.9 57 0.0019 18.9 3.0 22 43-64 17-38 (113)
76 3t72_q RNA polymerase sigma fa 27.7 57 0.0019 18.8 2.9 20 49-68 38-57 (99)
77 3s8q_A R-M controller protein; 26.9 58 0.002 17.1 2.8 16 53-68 56-71 (82)
78 2rrd_A BLM HRDC domain, HRDC d 26.9 14 0.00049 21.7 0.1 27 45-71 44-70 (101)
79 2kpj_A SOS-response transcript 26.9 63 0.0022 17.6 3.0 29 44-72 39-73 (94)
80 3arc_L Photosystem II reaction 26.8 62 0.0021 15.7 3.6 20 3-22 12-31 (37)
81 1i7h_A Ferredoxin; 2Fe-2S,elec 26.5 62 0.0021 18.7 3.0 22 43-64 17-38 (111)
82 2dgz_A Werner syndrome protein 26.5 16 0.00053 22.1 0.2 29 45-74 44-72 (113)
83 1adr_A P22 C2 repressor; trans 26.4 63 0.0022 16.4 2.8 22 49-70 17-38 (76)
84 1jq4_A Methane monooxygenase c 26.3 55 0.0019 18.3 2.7 22 43-64 17-38 (98)
85 1qo8_A Flavocytochrome C3 fuma 26.3 35 0.0012 25.3 2.2 26 47-72 436-465 (566)
86 3mzy_A RNA polymerase sigma-H 26.2 60 0.0021 19.0 3.0 22 47-68 121-142 (164)
87 1b0n_B Protein (SINI protein); 26.1 45 0.0015 17.7 2.0 15 55-69 20-34 (57)
88 3c57_A Two component transcrip 26.0 65 0.0022 18.0 3.0 21 48-68 40-60 (95)
89 1xlq_A Putidaredoxin, PDX; [2F 25.8 60 0.0021 18.5 2.8 21 43-63 13-33 (106)
90 2a6c_A Helix-turn-helix motif; 25.7 70 0.0024 17.1 3.0 25 46-70 27-51 (83)
91 2bt6_A Adrenodoxin 1; rutheniu 25.4 63 0.0022 18.5 2.9 22 44-65 20-41 (108)
92 3t76_A VANU, transcriptional r 25.3 63 0.0022 18.1 2.8 28 45-72 32-59 (88)
93 1uxc_A FRUR (1-57), fructose r 25.2 59 0.002 17.2 2.5 18 52-69 2-19 (65)
94 3lsg_A Two-component response 25.2 64 0.0022 17.9 2.8 19 51-69 20-38 (103)
95 2k9q_A Uncharacterized protein 25.1 68 0.0023 16.7 2.8 20 50-69 15-34 (77)
96 2hin_A GP39, repressor protein 25.1 51 0.0017 18.0 2.2 18 53-70 13-30 (71)
97 1s7o_A Hypothetical UPF0122 pr 25.0 68 0.0023 18.8 3.0 21 48-68 36-56 (113)
98 2g04_A Probable fatty-acid-COA 25.0 49 0.0017 23.6 2.7 18 57-74 91-108 (359)
99 3frw_A Putative Trp repressor 24.8 48 0.0016 20.0 2.2 28 47-74 55-82 (107)
100 2kv2_A Bloom syndrome protein; 24.6 16 0.00054 20.6 0.0 27 45-71 29-55 (85)
101 1awd_A Ferredoxin; electron tr 24.4 69 0.0023 17.8 2.8 22 43-64 12-33 (94)
102 1a70_A Ferredoxin; iron-sulfur 24.4 69 0.0024 18.0 2.9 22 43-64 14-35 (97)
103 3mml_B Allophanate hydrolase s 24.4 74 0.0025 21.4 3.4 43 45-87 108-154 (228)
104 2wiu_B HTH-type transcriptiona 24.3 69 0.0024 16.9 2.8 23 48-70 23-45 (88)
105 1czp_A Ferredoxin I; [2Fe-2S] 24.1 70 0.0024 17.9 2.9 22 43-64 16-37 (98)
106 1d4d_A Flavocytochrome C fumar 23.9 37 0.0013 25.3 1.9 26 47-72 441-470 (572)
107 1uwm_A Ferredoxin VI, FDVI; el 23.8 60 0.0021 18.5 2.5 21 43-63 13-33 (106)
108 2ewt_A BLDD, putative DNA-bind 23.8 80 0.0027 15.8 3.0 23 48-70 19-43 (71)
109 1iue_A Ferredoxin; electron tr 23.4 74 0.0025 17.8 2.9 22 43-64 14-35 (98)
110 2y5c_A Adrenodoxin-like protei 23.1 74 0.0025 18.2 2.9 21 44-64 19-39 (109)
111 3mn2_A Probable ARAC family tr 22.8 66 0.0022 18.0 2.6 19 51-69 19-37 (108)
112 2l8n_A Transcriptional repress 22.7 83 0.0028 16.7 2.8 20 51-70 10-29 (67)
113 2xvc_A ESCRT-III, SSO0910; cel 22.4 76 0.0026 17.1 2.5 18 52-69 27-44 (59)
114 2wus_R RODZ, putative uncharac 22.4 96 0.0033 18.1 3.3 17 53-69 58-74 (112)
115 3kz3_A Repressor protein CI; f 22.3 94 0.0032 16.2 3.1 23 48-70 23-45 (80)
116 2yim_A Probable alpha-methylac 22.1 54 0.0018 23.4 2.4 19 56-74 88-106 (360)
117 1j1v_A Chromosomal replication 22.1 69 0.0024 18.3 2.5 19 52-70 6-24 (94)
118 3uj3_X DNA-invertase; helix-tu 22.1 19 0.00064 22.9 0.0 26 47-72 155-180 (193)
119 2e1f_A Werner syndrome ATP-dep 22.0 15 0.00052 21.7 -0.4 27 45-71 37-63 (103)
120 2k9i_A Plasmid PRN1, complete 21.9 73 0.0025 15.6 2.4 18 52-69 23-40 (55)
121 2jml_A DNA binding domain/tran 21.8 63 0.0022 17.5 2.3 19 52-70 7-25 (81)
122 1xk7_A Crotonobetainyl-COA:car 21.7 63 0.0022 23.5 2.8 19 56-74 103-121 (408)
123 2ef8_A C.ECOT38IS, putative tr 21.7 84 0.0029 16.3 2.8 20 50-69 23-42 (84)
124 3iuo_A ATP-dependent DNA helic 21.7 84 0.0029 18.7 3.0 22 47-68 29-50 (122)
125 1xsv_A Hypothetical UPF0122 pr 21.7 1E+02 0.0034 17.9 3.3 21 48-68 39-59 (113)
126 2k9s_A Arabinose operon regula 21.6 80 0.0028 17.6 2.8 20 50-69 20-39 (107)
127 2cob_A LCOR protein; MLR2, KIA 21.6 72 0.0025 17.7 2.4 23 46-68 25-48 (70)
128 3oou_A LIN2118 protein; protei 21.5 71 0.0024 17.9 2.5 19 51-69 22-40 (108)
129 3f6w_A XRE-family like protein 21.4 88 0.003 16.3 2.8 23 48-70 25-47 (83)
130 2ys9_A Homeobox and leucine zi 21.2 64 0.0022 17.9 2.1 28 44-71 27-54 (70)
131 1x57_A Endothelial differentia 21.2 96 0.0033 16.6 3.0 25 46-70 22-46 (91)
132 3ubm_A COAT2, formyl-COA:oxala 21.1 65 0.0022 23.8 2.8 18 57-74 128-145 (456)
133 2vjq_A Formyl-coenzyme A trans 21.1 66 0.0023 23.7 2.8 18 57-74 102-119 (428)
134 3oio_A Transcriptional regulat 21.0 73 0.0025 18.0 2.5 19 51-69 24-42 (113)
135 1xn7_A Hypothetical protein YH 20.6 92 0.0031 17.2 2.8 16 52-67 18-33 (78)
136 1sfu_A 34L protein; protein/Z- 20.3 1.2E+02 0.0042 16.9 3.2 18 49-66 26-45 (75)
137 1z4h_A TORI, TOR inhibition pr 20.2 84 0.0029 16.3 2.5 20 52-71 12-31 (66)
138 3tqn_A Transcriptional regulat 20.2 1E+02 0.0034 17.8 3.0 21 47-67 27-50 (113)
139 3pvv_A Chromosomal replication 20.1 79 0.0027 18.4 2.5 22 50-71 8-29 (101)
140 3eus_A DNA-binding protein; st 20.0 1.1E+02 0.0037 16.4 3.0 25 46-70 23-47 (86)
No 1
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.52 E-value=1.7e-14 Score=76.96 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=42.3
Q ss_pred ceEEecCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCEEEEcC
Q 040436 43 SVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAG 89 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~c~~l~~G~~lcvp~ 89 (91)
..|+|++|||+|+||++|+++.++|.++|+ +.+.|++||.+.||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~--~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS--DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS--CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC--CCCcCCcCCEEEEec
Confidence 469999999999999999999999999998 778999999999985
No 2
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=80.32 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=43.5
Q ss_pred ceEEecCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCEEEEcCC
Q 040436 43 SVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGS 90 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~c~~l~~G~~lcvp~~ 90 (91)
..|+|++|||+|+||++|++++++|+++|+..+.+.|++||.|.||..
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~l~~~~~l~~Gq~l~iP~~ 63 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPIL 63 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHHHHHHHHTCCCSSCGGGSSCEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHCcCHHHHHHHcCCCCccccCCCCEEEECCC
Confidence 459999999999999999999999999996546789999999999853
No 3
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.36 E-value=6e-13 Score=88.43 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=44.8
Q ss_pred CCceEEecCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCEEEEcCC
Q 040436 41 CDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAGS 90 (91)
Q Consensus 41 c~~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~c~~l~~G~~lcvp~~ 90 (91)
-...|+|++|||||+||++|++++.+|.++|.--+.+.|++||+|.||..
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N~~~~~~~i~~Gq~L~ip~~ 110 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFDCDFHEIARRNNIQNEDLIYPGQVLQVPTK 110 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTTCCHHHHHHHHTCCGGGCCCTTEEEEESCC
T ss_pred CCceEEECCCCcHHHHHHHcCCCHHHHHHHcCCCCcccccCCCEEEEcCC
Confidence 34689999999999999999999999999995337789999999999964
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.24 E-value=1.2e-11 Score=84.87 Aligned_cols=51 Identities=31% Similarity=0.432 Sum_probs=46.4
Q ss_pred CCCC-c--eEEecCCCCHHHHHHHcCCCH--------HHHHHhCCCC-CCCCCCCCCEEEEcC
Q 040436 39 PTCD-S--VYGAQEGDTCSNVTEEFNLST--------DVFLAINPNI-NCDAIFVGQWLCVAG 89 (91)
Q Consensus 39 ~~c~-~--~y~v~~GdTc~~Ia~~~~i~~--------~~l~~~Np~v-~c~~l~~G~~lcvp~ 89 (91)
..|+ . .|+|++|||+|.||++||+++ ++|+++||++ +.+.|.+||.|.||.
T Consensus 3 ~~C~~a~~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~ 65 (212)
T 4eby_A 3 TSCPLALASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPF 65 (212)
T ss_dssp CCCSCEEEEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEE
T ss_pred CCCccceEEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEec
Confidence 4587 3 499999999999999999998 9999999999 688999999999994
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.16 E-value=4.1e-11 Score=82.14 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=43.1
Q ss_pred ceEEecCCCCHHHHH-HHcC--CCHHHHHHhCCCCCCCCCCCCCEEEEcC
Q 040436 43 SVYGAQEGDTCSNVT-EEFN--LSTDVFLAINPNINCDAIFVGQWLCVAG 89 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia-~~~~--i~~~~l~~~Np~v~c~~l~~G~~lcvp~ 89 (91)
..|+|++|||+|+|| ++|+ +++++|+++|+ ++.+.|++||.|.||.
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~-~~~~~l~~Gq~L~IP~ 127 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP-FPATNIPLSATLNVLV 127 (212)
T ss_dssp EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC-SCTTCCCTTCEEEEEE
T ss_pred eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC-CCcccCCCCCEEEEcC
Confidence 469999999999999 8999 99999999998 8888999999999984
No 6
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.98 E-value=5.8e-10 Score=73.67 Aligned_cols=46 Identities=28% Similarity=0.609 Sum_probs=41.9
Q ss_pred ceEEecCCCCHHHHHHHcCCCHHHHHHhCCCCCCCCCCCCCEEEEcC
Q 040436 43 SVYGAQEGDTCSNVTEEFNLSTDVFLAINPNINCDAIFVGQWLCVAG 89 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~c~~l~~G~~lcvp~ 89 (91)
.+|+||+|||+++||++|+++.++|+++||++|.. +.+|+.+.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~vd~~-l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSLQAG-LTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGGGGC-CCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccCCCc-cCCCccccCcc
Confidence 36999999999999999999999999999998754 68999999975
No 7
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.56 E-value=2.5e-08 Score=72.64 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=42.1
Q ss_pred CceEEecCCCCHHHHHHHcCCCHHHHHHhCCCC----CCCCCCCCCEEEEcC
Q 040436 42 DSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNI----NCDAIFVGQWLCVAG 89 (91)
Q Consensus 42 ~~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v----~c~~l~~G~~lcvp~ 89 (91)
...|+|++|||+|+|+++||++.++++++|... +.+.|.+||.|.+|.
T Consensus 7 ~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~ 58 (361)
T 2gu1_A 7 RIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMM 58 (361)
T ss_dssp CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEE
T ss_pred ceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEE
Confidence 346999999999999999999999999999643 257899999999974
No 8
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.75 E-value=1.8e-05 Score=57.56 Aligned_cols=45 Identities=9% Similarity=0.189 Sum_probs=37.9
Q ss_pred eEEecCCCCHHHHHHHcCCCHHHHHHhCCCCC----C-CCCCCCCEEEEc
Q 040436 44 VYGAQEGDTCSNVTEEFNLSTDVFLAINPNIN----C-DAIFVGQWLCVA 88 (91)
Q Consensus 44 ~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~----c-~~l~~G~~lcvp 88 (91)
.|.++.|||+|.||+++|++.+++++||.... - ..|.+||++.|+
T Consensus 102 ~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 102 LFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp EEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred EEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 58889999999999999999999999996332 2 569999999986
No 9
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.24 E-value=0.00047 Score=50.51 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=39.1
Q ss_pred CceEEecCCCCHHHHHHHcCCCHHHHHHhCCCC----CCCCCCCCCEEEEc
Q 040436 42 DSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNI----NCDAIFVGQWLCVA 88 (91)
Q Consensus 42 ~~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v----~c~~l~~G~~lcvp 88 (91)
...|+|++|||+.+|-+++|++..++.+++... +-..|.+||.|.+.
T Consensus 14 W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~ 64 (371)
T 3slu_A 14 WVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVL 64 (371)
T ss_dssp EEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEE
T ss_pred eEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEE
Confidence 445999999999999999999999988887544 45789999999873
No 10
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.41 E-value=0.36 Score=25.53 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.7
Q ss_pred cCCCC----HHHHHHHcCCCHHHHHHhC
Q 040436 48 QEGDT----CSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 48 ~~GdT----c~~Ia~~~~i~~~~l~~~N 71 (91)
+.|.+ ..+||++|||+...|.+|=
T Consensus 19 ~~g~s~~~~~~~vA~~~gIs~~tl~~W~ 46 (59)
T 2glo_A 19 RNDNDCKGNQRATARKYNIHRRQIQKWL 46 (59)
T ss_dssp HHCTTTTTCHHHHHHHTTSCHHHHHHHH
T ss_pred HcCCCcchHHHHHHHHHCcCHHHHHHHH
Confidence 45677 9999999999999999884
No 11
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=86.81 E-value=0.0023 Score=42.02 Aligned_cols=34 Identities=9% Similarity=-0.053 Sum_probs=27.6
Q ss_pred CCceEEecCCCCHHHHHHHcCCCHHHHHHhCCCC
Q 040436 41 CDSVYGAQEGDTCSNVTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 41 c~~~y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v 74 (91)
+...|.|++|||+++||+++|.+.+..+.+|..+
T Consensus 124 ~~~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I 157 (167)
T 2l9y_A 124 ARDVRLVDGGKVLEAELRYSGGWNRSRIYLDEHI 157 (167)
T ss_dssp EEEEEEETTTTEEEEEEEETTEEEEEEECGGGTE
T ss_pred cceEEEeCCcCChHHHHHHcCCceEEEEEccccc
Confidence 3457999999999999999997777766666554
No 12
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.31 E-value=0.92 Score=26.02 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=20.3
Q ss_pred CCCHHHHHHHcCCCHHHHHHhC
Q 040436 50 GDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
|.|..+||+++||+...|++|=
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~ 44 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWI 44 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHH
Confidence 7899999999999999999884
No 13
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=82.02 E-value=1.2 Score=21.88 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=21.7
Q ss_pred ecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
.+.|.|..+||+.+|++...++++=
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l 42 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHS
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHH
Confidence 3568899999999999999998873
No 14
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=81.85 E-value=1.5 Score=25.96 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=23.4
Q ss_pred ecCCCCHHHHHHHcCCCHHHHHHhCCCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~~~Np~v 74 (91)
...+.|..++|++|+|+.++|.+|-...
T Consensus 46 ~~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 46 IHGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp HTTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445699999999999999999997544
No 15
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=81.25 E-value=1.3 Score=25.09 Aligned_cols=23 Identities=9% Similarity=0.342 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|.+..+||+++||+...|++|
T Consensus 36 ~~g~s~~~iA~~~gIs~sTl~rW 58 (87)
T 2elh_A 36 HDGESKASVARDIGVPESTLRGW 58 (87)
T ss_dssp HHTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999998887
No 16
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=80.59 E-value=1 Score=28.55 Aligned_cols=27 Identities=7% Similarity=-0.011 Sum_probs=21.9
Q ss_pred EecCCCCHHHHHHHcCCCHHH----HHHhCC
Q 040436 46 GAQEGDTCSNVTEEFNLSTDV----FLAINP 72 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~----l~~~Np 72 (91)
.+..+||+.++|++.|++.+. +.++|.
T Consensus 91 ~~~kadTleeLA~~~gid~~~L~~TV~~yN~ 121 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGIVVDELVQTVKNYQG 121 (160)
T ss_dssp CSEECSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ceEecCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456789999999999999875 566773
No 17
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.40 E-value=1.7 Score=20.88 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=20.4
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..|.+..+||+.+|++...+.++
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~ 41 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVY 41 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988776
No 18
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=69.87 E-value=1.5 Score=25.60 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=18.9
Q ss_pred CCCHHHHHHHcCCCHHHHHHh
Q 040436 50 GDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
|.++.+||.++||+...+.+|
T Consensus 30 g~s~~~va~~~gIs~~tl~~W 50 (108)
T 2rn7_A 30 WATICSIAPKIGCTPETLRVW 50 (108)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHH
Confidence 468999999999999999888
No 19
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=66.79 E-value=6.1 Score=19.84 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..|.|..+||+.+|++...+.++
T Consensus 29 ~~g~s~~eIA~~lgis~~TV~~~ 51 (55)
T 2x48_A 29 KMGYTVQQIANALGVSERKVRRY 51 (55)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 46889999999999999988764
No 20
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=62.73 E-value=6.3 Score=22.71 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|.+..+||+.+|++...+.+|
T Consensus 31 ~~g~s~~~ia~~lgis~~Tv~~w 53 (128)
T 1pdn_C 31 ADGIRPCVISRQLRVSHGCVSKI 53 (128)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999998877665
No 21
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=60.21 E-value=7.1 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.291 Sum_probs=20.5
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|.+..+||+.+|++...+.+|
T Consensus 46 ~~G~s~~~iA~~lgis~~TV~rw 68 (149)
T 1k78_A 46 HQGVRPCDISRQLRVSHGCVSKI 68 (149)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999887766
No 22
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=59.05 E-value=7.9 Score=21.50 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=19.9
Q ss_pred CCCCHHHHHHHcCCCHHHHH-HhC
Q 040436 49 EGDTCSNVTEEFNLSTDVFL-AIN 71 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~-~~N 71 (91)
.++|+.+-++.+|+++++|. ++|
T Consensus 39 ~~~tL~~Aa~~~gid~~~ll~~Ln 62 (73)
T 2k5e_A 39 QNESLEQGANAHGLNVEDILRDLN 62 (73)
T ss_dssp GGSBHHHHHHHTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHcCCCHHHHHHHHH
Confidence 68999999999999999876 444
No 23
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=55.89 E-value=9.4 Score=22.53 Aligned_cols=23 Identities=4% Similarity=-0.015 Sum_probs=20.4
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|.+..+||+.+|++...+.+|
T Consensus 20 ~~G~s~~~ia~~lgis~~Tv~r~ 42 (141)
T 1u78_A 20 LLNVSLHEMSRKISRSRHCIRVY 42 (141)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 57899999999999999988775
No 24
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=54.70 E-value=5.2 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=22.3
Q ss_pred EecCCCCHHHHHHHcCCCHHHHHHhCC
Q 040436 46 GAQEGDTCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~l~~~Np 72 (91)
..+-+-|..+.+++|+|+.++|.+|=.
T Consensus 46 v~~g~lS~~EAa~ry~Is~~ei~~W~r 72 (101)
T 2oa4_A 46 VIYGLITLAEAKQTYGLSDEEFNSWVS 72 (101)
T ss_dssp HHHTTCCHHHHHHTTCSSHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 344566899999999999999999854
No 25
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=54.62 E-value=12 Score=20.96 Aligned_cols=24 Identities=13% Similarity=0.357 Sum_probs=20.0
Q ss_pred cCCCCHHHHHHHcCCCHHHHH-HhC
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL-AIN 71 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~-~~N 71 (91)
-.++|+.+.++.+|+++++|. ++|
T Consensus 36 a~~~tLeeA~~~hgiD~d~ll~eLn 60 (76)
T 2k53_A 36 SMGESIEDACAVHGIDADKLVKELN 60 (76)
T ss_dssp CCCSBHHHHHHHHTCCHHHHHHHHH
T ss_pred cccccHHHHHHHcCCCHHHHHHHHH
Confidence 347899999999999999876 444
No 26
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.96 E-value=16 Score=19.41 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=17.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHH
Q 040436 49 EGDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~ 69 (91)
.|-|..+||+..|++...+..
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~ 49 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQ 49 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 588999999999999876543
No 27
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=50.25 E-value=17 Score=18.97 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=17.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
..|-|..+||+..|++...+.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH
Confidence 368899999999999988654
No 28
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=50.11 E-value=13 Score=22.84 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHH
Q 040436 49 EGDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~ 69 (91)
.|.+..++|++||+|...+++
T Consensus 91 ~G~n~~eLArkYgLSer~I~~ 111 (129)
T 1rr7_A 91 NGRNVSELTTRYGVTFNTVYK 111 (129)
T ss_dssp CSSCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
Confidence 499999999999999988765
No 29
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.65 E-value=17 Score=18.66 Aligned_cols=22 Identities=5% Similarity=-0.000 Sum_probs=18.4
Q ss_pred cCCCCHHHHHHHcCCCHHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~ 69 (91)
-.|.|..+||+..|++...+..
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~ 50 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRS 50 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 4688999999999999887543
No 30
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=48.51 E-value=16 Score=23.38 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHcCCCHHHHHHhCC
Q 040436 49 EGDTCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~~Np 72 (91)
.|-|...||++.||+...|++|-.
T Consensus 47 ~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHH
Confidence 367999999999999999999853
No 31
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=48.16 E-value=18 Score=19.81 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|..++|++.|++...+.++
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~ 42 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANA 42 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 56889999999999998888765
No 32
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.65 E-value=24 Score=18.33 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
..|.|..+||+..|++...+.
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~ 44 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVR 44 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHH
Confidence 678899999999999987654
No 33
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=43.58 E-value=14 Score=22.76 Aligned_cols=26 Identities=8% Similarity=0.074 Sum_probs=22.4
Q ss_pred EEecCCCCHHHHHHHcCC-CHHHHHHh
Q 040436 45 YGAQEGDTCSNVTEEFNL-STDVFLAI 70 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i-~~~~l~~~ 70 (91)
-.+..|.|+.+|++..|+ +...|++|
T Consensus 23 ~~i~~G~sl~~i~~~~~~ps~~T~~~W 49 (140)
T 4dyq_A 23 SLLSSGESLLKVCKRPGMPDKSTVFRW 49 (140)
T ss_dssp HHHHTTCCHHHHHTSTTCCCHHHHHHH
T ss_pred HHHHCCCcHHHHHhcCCCCCHHHHHHH
Confidence 346789999999999999 78888887
No 34
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.03 E-value=27 Score=19.27 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHcCCCHHHHH
Q 040436 49 EGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~ 68 (91)
.|-|..+||+..|++.....
T Consensus 37 ~~~s~~EIA~~lgis~~tV~ 56 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIR 56 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHH
Confidence 68899999999999987654
No 35
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=40.77 E-value=16 Score=22.34 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=21.5
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
+.|.+..+||+.+|++...+.+|=
T Consensus 39 ~~G~s~~~IA~~lgis~~TV~rwl 62 (159)
T 2k27_A 39 HQGVRPCDISRQLRVSHGCVSKIL 62 (159)
T ss_dssp HHTCCHHHHHHHHTCCSHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999999999988874
No 36
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=40.37 E-value=18 Score=23.04 Aligned_cols=20 Identities=5% Similarity=0.213 Sum_probs=16.5
Q ss_pred CCHHHHHHHcCCCHHHHHHh
Q 040436 51 DTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.+..+++|||.+++++..+
T Consensus 132 ~~l~~L~RKyg~~~eell~~ 151 (175)
T 4abx_A 132 SALSKLKNKYGPTLEDVVEF 151 (175)
T ss_dssp HHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 35788999999999988764
No 37
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=39.66 E-value=29 Score=20.77 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=17.8
Q ss_pred ecCCCCHHHHHHHc-CCCHHHHHH
Q 040436 47 AQEGDTCSNVTEEF-NLSTDVFLA 69 (91)
Q Consensus 47 v~~GdTc~~Ia~~~-~i~~~~l~~ 69 (91)
...|.|-.+|++.| +++.+++..
T Consensus 61 l~~G~s~eeIl~~yP~Lt~edI~a 84 (106)
T 2ga1_A 61 RQQGAPDKELLANYPGLTAEDLSA 84 (106)
T ss_dssp HHTTCCHHHHHHHSTTCCHHHHHH
T ss_pred HHcCCCHHHHHHHCCCCCHHHHHH
Confidence 35788888888888 888887653
No 38
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=39.35 E-value=29 Score=21.85 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.5
Q ss_pred ecCCCCHHHHHHHcCCCHHHHHHhCCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFLAINPN 73 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~~~Np~ 73 (91)
-+-|..+..+|+.+|++.+++.+.--+
T Consensus 11 ge~g~DL~~vA~~~gls~~evi~~h~~ 37 (141)
T 2zp2_A 11 GEFGPDLEEVAKINQLSPEEVIDIHTN 37 (141)
T ss_dssp TTTCTTHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHhCcCHHHHHHHHhC
Confidence 345789999999999999999987643
No 39
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.73 E-value=36 Score=17.93 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=17.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
-.|.|..+||+..|++...+.
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~ 49 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVE 49 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 468899999999999987654
No 40
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=38.48 E-value=24 Score=19.29 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=17.6
Q ss_pred ecCCCCHHHHHHHcCCCHHH
Q 040436 47 AQEGDTCSNVTEEFNLSTDV 66 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~ 66 (91)
|..|-|-.++|..|++++++
T Consensus 15 ~~QGMTaGEVAA~f~w~Le~ 34 (68)
T 3i71_A 15 VRQGMTAGEVAAHFGWPLEK 34 (68)
T ss_dssp CTTCBCHHHHHHHHTCCHHH
T ss_pred HhccccHHHHHHHhCCcHHH
Confidence 56699999999999999876
No 41
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=38.38 E-value=25 Score=17.61 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.5
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
..|.|..+||+..|++...+.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~ 31 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVE 31 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHH
Confidence 468899999999999987654
No 42
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=36.55 E-value=27 Score=21.19 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=16.4
Q ss_pred CHHHHHHHcCCCHHHHHHh
Q 040436 52 TCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~~ 70 (91)
.+|.+|..-|.|.++|..+
T Consensus 11 ~LW~lA~~~NFT~~ELeSl 29 (109)
T 2fcw_A 11 DLWDLAQSANLTDKELEAF 29 (109)
T ss_dssp HHHHHHHTSCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHH
Confidence 4899999999999998653
No 43
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=36.53 E-value=29 Score=19.31 Aligned_cols=24 Identities=4% Similarity=-0.004 Sum_probs=19.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHH-HhC
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL-AIN 71 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~-~~N 71 (91)
-..+|+...|+.+|+++++|. ++|
T Consensus 47 g~~~TL~~aa~~~gid~d~l~~~L~ 71 (81)
T 2fi0_A 47 GRKVSLKQGSKLAGTPMDKIVRTLE 71 (81)
T ss_dssp HHHCBHHHHHHHHTCCHHHHHHHHH
T ss_pred cccCcHHHHHHHcCCCHHHHHHHHH
Confidence 346999999999999999877 444
No 44
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=36.00 E-value=20 Score=21.02 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=17.6
Q ss_pred cCCCCHH-HHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCS-NVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~-~Ia~~~~i~~~~l~~~ 70 (91)
+.|.+.- ++|+.|||+...+.+|
T Consensus 22 ~~g~~~~~~~A~~~gvs~stl~~~ 45 (131)
T 1hlv_A 22 ENPDLRKGEIARRFNIPPSTLSTI 45 (131)
T ss_dssp HCTTSCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCcHHHHHHHhCCCHHHHHHH
Confidence 4566655 9999999998776655
No 45
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=35.06 E-value=36 Score=16.85 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=15.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.++
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~ 34 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGI 34 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 34666777777777777776665
No 46
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=34.72 E-value=14 Score=22.40 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=16.9
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 040436 50 GDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~ 69 (91)
-+++..||+.+|++++.|..
T Consensus 59 ~~~l~~iA~~f~V~~~yl~~ 78 (123)
T 3qwg_A 59 GATMAALANFFRIKAAYFTD 78 (123)
T ss_dssp HHHHHHHHHHTTSCTHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHcC
Confidence 35799999999999988763
No 47
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.62 E-value=38 Score=18.45 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=18.8
Q ss_pred ecCCCCHHHHHHHcCCCHHHHH
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
...|-|..+||++.|++...+.
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~ 54 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVK 54 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHH
Confidence 3689999999999999987654
No 48
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=33.87 E-value=42 Score=18.65 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=19.1
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi~i 34 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGYDL 34 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 5688999999999999998764
No 49
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=33.67 E-value=35 Score=17.93 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=18.1
Q ss_pred CHHHHHHHcCCCHHHHHHhCC
Q 040436 52 TCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~~Np 72 (91)
|..++|+..|++...|++|-.
T Consensus 4 t~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 456899999999999999864
No 50
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=33.39 E-value=40 Score=17.34 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=19.8
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHh
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
...+.|-|-.++|++.|++...+.+|
T Consensus 18 ~r~~~g~s~~~lA~~~gis~~~i~~~ 43 (76)
T 3bs3_A 18 VLAEKQRTNRWLAEQMGKSENTISRW 43 (76)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 33456778888888888888887766
No 51
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=33.37 E-value=29 Score=18.51 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=16.5
Q ss_pred CHHHHHHHcCCCHHHHHH
Q 040436 52 TCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~ 69 (91)
|+.+|.++.|++.++|.+
T Consensus 52 ~lk~Ilkqagl~~eef~~ 69 (70)
T 1whz_A 52 TFKRILRDAGLTEEEFHN 69 (70)
T ss_dssp HHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhh
Confidence 799999999999999975
No 52
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=33.22 E-value=37 Score=17.25 Aligned_cols=24 Identities=13% Similarity=0.219 Sum_probs=20.1
Q ss_pred EecCCCCHHHHHHHcCCCHHHHHHh
Q 040436 46 GAQEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..+.| |...+|++.|++...+.++
T Consensus 10 ~~~~g-s~~~~A~~lgis~~~vs~~ 33 (67)
T 2pij_A 10 LEEHG-TQSALAAALGVNQSAISQM 33 (67)
T ss_dssp HHHTC-CHHHHHHHHTSCHHHHHHH
T ss_pred HHHcC-CHHHHHHHHCcCHHHHHHH
Confidence 34567 9999999999999887776
No 53
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=32.80 E-value=41 Score=17.39 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHcCCCHHHHHHhC
Q 040436 53 CSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 53 c~~Ia~~~~i~~~~l~~~N 71 (91)
+..||+.+|+++++|....
T Consensus 53 l~~ia~~l~~~~~~l~~~~ 71 (78)
T 3b7h_A 53 IRKVCGTLGISVHDFFDFP 71 (78)
T ss_dssp HHHHHHHHTCCHHHHTCST
T ss_pred HHHHHHHcCCCHHHHhcCC
Confidence 5556666666666665433
No 54
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=32.64 E-value=39 Score=17.90 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHh
Q 040436 49 EGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
.| |-.++|++.|++...+.+|
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~ 31 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNW 31 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHH
Confidence 35 6666666666666655554
No 55
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=32.21 E-value=21 Score=19.19 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=17.8
Q ss_pred CCHHHHHHHcCCCHHHHHHhC
Q 040436 51 DTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~~N 71 (91)
+++..||+.+|+++++|..--
T Consensus 58 ~~l~~ia~~l~v~~~~l~~~~ 78 (86)
T 2ofy_A 58 FTIAAVARVLDLSLDDVAAVV 78 (86)
T ss_dssp HHHHHHHHHTTCCHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHhccc
Confidence 468999999999999998543
No 56
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=32.02 E-value=39 Score=21.16 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.3
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..|.+..+||+.+|++...++++
T Consensus 156 ~~G~s~~~Ia~~l~is~~tv~r~ 178 (183)
T 1gdt_A 156 QQGLGASHISKTMNIARSTVYKV 178 (183)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCcCHHHHHHH
Confidence 57999999999999999888764
No 57
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=31.44 E-value=44 Score=18.77 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=19.5
Q ss_pred ceEEecCCCCHHHHHHHcCCCHH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLSTD 65 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~~ 65 (91)
..+.+.+|+|+-+.+.+.|+.++
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i~ 38 (98)
T 1frd_A 16 TTIEIDEETTILDGAEENGIELP 38 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCcc
Confidence 46788999999999999997643
No 58
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=31.32 E-value=15 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=17.0
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 040436 50 GDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~ 69 (91)
-+++..||+.+|++++.|..
T Consensus 61 ~~~l~~iA~~f~V~~~yl~~ 80 (135)
T 3r1f_A 61 GATMAALANFFRIKAAYFTD 80 (135)
T ss_dssp HHHHHHHHHHHTSCTHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHcC
Confidence 35799999999999988773
No 59
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=31.01 E-value=19 Score=26.30 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=18.5
Q ss_pred CCCHHHHHHHcCCCHHH----HHHhCC
Q 040436 50 GDTCSNVTEEFNLSTDV----FLAINP 72 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~----l~~~Np 72 (91)
+||+.++|++.|++.+. +.++|.
T Consensus 385 adtleeLA~~~g~~~~~l~~tv~~yN~ 411 (510)
T 4at0_A 385 AETVEELESDMGLPAGALQSTVEVYNK 411 (510)
T ss_dssp ESSHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 69999999999999655 456663
No 60
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=30.95 E-value=45 Score=16.77 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=10.4
Q ss_pred CCCHHHHHHHcCCCHHHHHHh
Q 040436 50 GDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
|-|-.++|++.|++...+.+|
T Consensus 16 glsq~~lA~~~gis~~~i~~~ 36 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLI 36 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHH
Confidence 444455555555555544443
No 61
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=30.84 E-value=46 Score=16.63 Aligned_cols=21 Identities=5% Similarity=0.151 Sum_probs=10.6
Q ss_pred CCCHHHHHHHcCCCHHHHHHh
Q 040436 50 GDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
|-|-.++|++.|++...+.+|
T Consensus 14 glsq~~lA~~~gis~~~i~~~ 34 (69)
T 1r69_A 14 GLNQAELAQKVGTTQQSIEQL 34 (69)
T ss_dssp TCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHH
Confidence 444555555555555554443
No 62
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=30.35 E-value=48 Score=17.05 Aligned_cols=21 Identities=10% Similarity=0.142 Sum_probs=9.8
Q ss_pred CCCHHHHHHHcCCCHHHHHHh
Q 040436 50 GDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
|-|-.++|++.|++...+.++
T Consensus 23 glsq~~lA~~~gis~~~i~~~ 43 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEV 43 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 444444555555544444433
No 63
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=30.26 E-value=50 Score=16.37 Aligned_cols=23 Identities=4% Similarity=-0.127 Sum_probs=18.5
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.+|
T Consensus 16 ~~g~s~~~lA~~~gis~~~i~~~ 38 (68)
T 2r1j_L 16 KLKIRQAALGKMVGVSNVAISQW 38 (68)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 34678888999999998888776
No 64
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.23 E-value=48 Score=16.82 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=17.7
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.++
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~ 46 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGV 46 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45677888888888888877765
No 65
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=30.07 E-value=48 Score=17.65 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=18.0
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
+..+.|-|-.++|++.|++...+.++-
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E 44 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIE 44 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 455666777777777777776666653
No 66
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=29.87 E-value=26 Score=19.30 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=32.2
Q ss_pred eEEecCCCCHHHHHHHcCCCHHH-HHHhCCCC-CCCCCCCCCEEEE
Q 040436 44 VYGAQEGDTCSNVTEEFNLSTDV-FLAINPNI-NCDAIFVGQWLCV 87 (91)
Q Consensus 44 ~y~v~~GdTc~~Ia~~~~i~~~~-l~~~Np~v-~c~~l~~G~~lcv 87 (91)
...+..|-|..++.++.+++.++ ....|..+ .-+.+..|+++-|
T Consensus 14 ~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeI 59 (74)
T 2l32_A 14 EVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKV 59 (74)
T ss_dssp EEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEE
T ss_pred eEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEE
Confidence 36788899999999999998765 45557555 4444556887765
No 67
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=29.21 E-value=1.4e+02 Score=21.39 Aligned_cols=40 Identities=5% Similarity=0.078 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHcCCCHHHHHHhCC----CCCCCCCCCCCEEEEc
Q 040436 49 EGDTCSNVTEEFNLSTDVFLAINP----NINCDAIFVGQWLCVA 88 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~~Np----~v~c~~l~~G~~lcvp 88 (91)
-.++++..+++.|++.+.+.+++. .+|=..|.+|+++.|.
T Consensus 116 I~~Sl~~a~~~agl~~~~~~~l~~i~~~~idf~~l~~GD~f~v~ 159 (371)
T 3slu_A 116 VKTSARGSLARAEVPVEIRESLSGIFAGRFSLDGLKEGDAVRLI 159 (371)
T ss_dssp CSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTCCCTTCEEEEE
T ss_pred EeccHHHHHHHcCCCHHHHHHHHHHHccCcCHHHcCCCCEEEEE
Confidence 378999999999999877666653 2344479999998773
No 68
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=29.19 E-value=46 Score=21.37 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..|.+..+||+.+|++...++++
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~ 195 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRI 195 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 47999999999999999998875
No 69
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.16 E-value=54 Score=18.04 Aligned_cols=21 Identities=5% Similarity=0.216 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
-.|-|..+||+..|++...+.
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 568899999999999987654
No 70
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=28.88 E-value=64 Score=16.55 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=20.8
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
...+.|-|-.++|++.|++...+.+|=
T Consensus 16 ~r~~~glsq~~lA~~~gis~~~is~~e 42 (73)
T 3omt_A 16 VLAEKGKTNLWLTETLDKNKTTVSKWC 42 (73)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 344567788899999999988877764
No 71
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=28.82 E-value=28 Score=25.86 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=20.4
Q ss_pred ecCCCCHHHHHHHcCCCHHHH----HHhCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVF----LAINP 72 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l----~~~Np 72 (91)
+..+||+.++|++.|++.+.| .++|.
T Consensus 441 ~~~~~tl~ela~~~gi~~~~l~~tv~~yn~ 470 (571)
T 1y0p_A 441 APTADSLVKLGKMEGIDGKALTETVARYNS 470 (571)
T ss_dssp CCEESSHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 346899999999999998754 45663
No 72
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=28.29 E-value=38 Score=22.38 Aligned_cols=18 Identities=0% Similarity=0.145 Sum_probs=15.6
Q ss_pred CHHHHHHHcCCCHHHHHH
Q 040436 52 TCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~ 69 (91)
.+.+||+.||++++.+..
T Consensus 172 yL~EIA~ey~V~w~~~~~ 189 (193)
T 3ggy_A 172 YLKEIAKTYDVPYSKLEN 189 (193)
T ss_dssp HHHHHHHHTTCCHHHHHT
T ss_pred HHHHHHHHcCCCCCCccc
Confidence 588999999999988764
No 73
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=28.24 E-value=57 Score=18.48 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=18.9
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
....+.+|+|+-+.+.+.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNIDL 37 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTCCC
T ss_pred EEEEECCCCHHHHHHHHcCCCc
Confidence 4578899999999999998764
No 74
>3c19_A Uncharacterized protein MK0293; protein structure initiative, PSI-2, NEW YORK SGX research center for structu genomics, nysgxrc; 2.50A {Methanopyrus kandleri AV19}
Probab=28.15 E-value=25 Score=23.28 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCHHHHHHHcCCCHHHHHH
Q 040436 51 DTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~ 69 (91)
|.|-.||+++|+++.++++
T Consensus 138 ED~~~iA~~~gipl~eV~~ 156 (186)
T 3c19_A 138 DECREIGEETGIPPREVKA 156 (186)
T ss_dssp HHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHH
Confidence 4699999999999999864
No 75
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=27.86 E-value=57 Score=18.87 Aligned_cols=22 Identities=5% Similarity=0.167 Sum_probs=19.2
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 17 ~~v~~~~g~tlL~aa~~~Gi~i 38 (113)
T 3ah7_A 17 LTVEVKPGTNILELAHDHHIEM 38 (113)
T ss_dssp EEEECCTTCBHHHHHHHTTCCC
T ss_pred eEEEECCCCcHHHHHHHcCCCC
Confidence 5688999999999999999864
No 76
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.66 E-value=57 Score=18.85 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHcCCCHHHHH
Q 040436 49 EGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~ 68 (91)
.|-|+.+||+..|++.....
T Consensus 38 e~~s~~EIA~~lgiS~~tVr 57 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIR 57 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHH
Confidence 57799999999999987643
No 77
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=26.88 E-value=58 Score=17.10 Aligned_cols=16 Identities=19% Similarity=0.314 Sum_probs=8.2
Q ss_pred HHHHHHHcCCCHHHHH
Q 040436 53 CSNVTEEFNLSTDVFL 68 (91)
Q Consensus 53 c~~Ia~~~~i~~~~l~ 68 (91)
+..||+.+|+++++|.
T Consensus 56 l~~ia~~l~v~~~~l~ 71 (82)
T 3s8q_A 56 LELIMKGLEVSDVVFF 71 (82)
T ss_dssp HHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHh
Confidence 4445555555555544
No 78
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens}
Probab=26.88 E-value=14 Score=21.69 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=24.7
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
|.|=+.+|+++||++.-.+.++|.+.+
T Consensus 44 ~~If~D~tL~eiA~~~P~t~~eL~~I~ 70 (101)
T 2rrd_A 44 FNIFNTVTLKKLAESLSSDPEVLLQID 70 (101)
T ss_dssp HHHCCHHHHHHHHHHCCCCHHHHHTST
T ss_pred CeeECHHHHHHHHHhCCCCHHHHhhCC
Confidence 778888999999999999999999877
No 79
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.87 E-value=63 Score=17.65 Aligned_cols=29 Identities=10% Similarity=0.133 Sum_probs=19.9
Q ss_pred eEEecCCC------CHHHHHHHcCCCHHHHHHhCC
Q 040436 44 VYGAQEGD------TCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 44 ~y~v~~Gd------Tc~~Ia~~~~i~~~~l~~~Np 72 (91)
....+.|. ++..|++.+|+++++|..-.+
T Consensus 39 is~~e~G~~~p~~~~l~~ia~~l~v~~~~l~~~~~ 73 (94)
T 2kpj_A 39 FNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKK 73 (94)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSC
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHCcCHHHHhcCCC
Confidence 45567774 466778888888888875543
No 80
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=26.83 E-value=62 Score=15.67 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=10.5
Q ss_pred CcchhhHHHHHHHHHHHHHH
Q 040436 3 SNKTSLFRNLALVLAVLLIV 22 (91)
Q Consensus 3 ~~~~~~l~~~~~l~~l~l~~ 22 (91)
.||.+...-+.++..+++++
T Consensus 12 LNRTSLy~GLLlifvlavlF 31 (37)
T 3arc_L 12 LNRTSLYLGLLLILVLALLF 31 (37)
T ss_dssp CCHHHHHHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHHHHHHh
Confidence 45555555555555555554
No 81
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=26.54 E-value=62 Score=18.66 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.9
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~i 38 (111)
T 1i7h_A 17 AVLEANSGETILDAALRNGIEI 38 (111)
T ss_dssp EEEECCTTCBHHHHHHHTTCCC
T ss_pred eEEEeCCCCcHHHHHHHcCCCC
Confidence 4688899999999999998764
No 82
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1
Probab=26.45 E-value=16 Score=22.06 Aligned_cols=29 Identities=3% Similarity=-0.033 Sum_probs=26.0
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhCCCC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v 74 (91)
|.|=+.+|+++||++.-.+.++|.+.+ ++
T Consensus 44 y~If~D~tL~emA~~~P~t~~eL~~I~-Gv 72 (113)
T 2dgz_A 44 AILATNKILVDMAKMRPTTVENVKRID-GV 72 (113)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHHHSS-SC
T ss_pred CeeECHHHHHHHHHhCCCCHHHHHhCC-CC
Confidence 778888899999999999999999988 45
No 83
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=26.35 E-value=63 Score=16.44 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHcCCCHHHHHHh
Q 040436 49 EGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 49 ~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
.|-|-.++|++.|++...+.+|
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~ 38 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQW 38 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4556677777777777666655
No 84
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=26.28 E-value=55 Score=18.35 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=18.7
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 17 ~~~~~~~g~tlL~a~~~~gi~i 38 (98)
T 1jq4_A 17 LRFECRSDEDVITAALRQNIFL 38 (98)
T ss_dssp EEEEEESCCTHHHHHHHHTCCC
T ss_pred EEEEeCCCChHHHHHHHcCCCC
Confidence 4578899999999999998764
No 85
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=26.27 E-value=35 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=20.4
Q ss_pred ecCCCCHHHHHHHcCCCHHHH----HHhCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVF----LAINP 72 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l----~~~Np 72 (91)
+...||+.++|++.|++.+.| .++|.
T Consensus 436 ~~~~~tl~eLa~~~gi~~~~l~~tv~~yn~ 465 (566)
T 1qo8_A 436 LYKGDTVEQLAKSTGMKVADLAKTVSDYNG 465 (566)
T ss_dssp CEEESSHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457899999999999998754 35663
No 86
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.15 E-value=60 Score=18.99 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=18.1
Q ss_pred ecCCCCHHHHHHHcCCCHHHHH
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
.-.|-|..+||+..|++...+.
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~ 142 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSID 142 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHH
Confidence 3478899999999999987654
No 87
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=26.09 E-value=45 Score=17.74 Aligned_cols=15 Identities=20% Similarity=0.160 Sum_probs=11.0
Q ss_pred HHHHHcCCCHHHHHH
Q 040436 55 NVTEEFNLSTDVFLA 69 (91)
Q Consensus 55 ~Ia~~~~i~~~~l~~ 69 (91)
.=|++.|++++|+.+
T Consensus 20 ~~Ak~lGlsleEIre 34 (57)
T 1b0n_B 20 VEAKEANISPEEIRK 34 (57)
T ss_dssp HHHHHTTCCHHHHHH
T ss_pred HHHHHcCCCHHHHHH
Confidence 347889999987543
No 88
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.02 E-value=65 Score=17.98 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
..|-|..+||+..|++...+.
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~ 60 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVK 60 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 679999999999999987643
No 89
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=25.78 E-value=60 Score=18.46 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=18.9
Q ss_pred ceEEecCCCCHHHHHHHcCCC
Q 040436 43 SVYGAQEGDTCSNVTEEFNLS 63 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~ 63 (91)
....+.+|+|+-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 467899999999999999987
No 90
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.69 E-value=70 Score=17.06 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=19.4
Q ss_pred EecCCCCHHHHHHHcCCCHHHHHHh
Q 040436 46 GAQEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..+.|-|-.++|++.|++...+.++
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~ 51 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDL 51 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3456778889999999988877765
No 91
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=25.43 E-value=63 Score=18.48 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred eEEecCCCCHHHHHHHcCCCHH
Q 040436 44 VYGAQEGDTCSNVTEEFNLSTD 65 (91)
Q Consensus 44 ~y~v~~GdTc~~Ia~~~~i~~~ 65 (91)
...+.+|+|+-+.|.+.|+.+.
T Consensus 20 ~v~~~~g~tLL~aa~~~gi~i~ 41 (108)
T 2bt6_A 20 TTKGKIGDSLLDVVVQNNLDID 41 (108)
T ss_dssp EEEEETTCBHHHHHHHTTCCCT
T ss_pred EEEECCCChHHHHHHHcCCCCC
Confidence 5788999999999999998764
No 92
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=25.27 E-value=63 Score=18.06 Aligned_cols=28 Identities=11% Similarity=0.122 Sum_probs=21.6
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhCC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~Np 72 (91)
...+.|-|-.++|++.|++...+.++-.
T Consensus 32 lR~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 32 LLIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456788888999999998888777643
No 93
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.25 E-value=59 Score=17.22 Aligned_cols=18 Identities=6% Similarity=-0.060 Sum_probs=14.3
Q ss_pred CHHHHHHHcCCCHHHHHH
Q 040436 52 TCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~ 69 (91)
|..+||++.|++...+-+
T Consensus 2 T~~diA~~aGVS~sTVSr 19 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASY 19 (65)
T ss_dssp CHHHHHHHHTSCHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHH
Confidence 678999999999876544
No 94
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.21 E-value=64 Score=17.90 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.4
Q ss_pred CCHHHHHHHcCCCHHHHHH
Q 040436 51 DTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~ 69 (91)
-++.+||+..|++...|.+
T Consensus 20 ~~~~~lA~~~~~S~~~l~r 38 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSI 38 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4889999999999877654
No 95
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.07 E-value=68 Score=16.68 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=10.0
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 040436 50 GDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~ 69 (91)
|-|-.++|++.|++...+.+
T Consensus 15 glsq~~lA~~~gis~~~i~~ 34 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCN 34 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 44445555555555544443
No 96
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.06 E-value=51 Score=18.04 Aligned_cols=18 Identities=0% Similarity=0.025 Sum_probs=16.7
Q ss_pred HHHHHHHcCCCHHHHHHh
Q 040436 53 CSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 53 c~~Ia~~~~i~~~~l~~~ 70 (91)
-..+|+..|++...+.+|
T Consensus 13 ~~~lA~~lGVs~~aVs~W 30 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQW 30 (71)
T ss_dssp HHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 578999999999999999
No 97
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.99 E-value=68 Score=18.81 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.0
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
-.|-|..+||+..|++...+.
T Consensus 36 ~~g~s~~EIA~~lgiS~~tV~ 56 (113)
T 1s7o_A 36 ADDYSLAEIADEFGVSRQAVY 56 (113)
T ss_dssp HTCCCHHHHHHHHTCCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 468999999999999987654
No 98
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=24.98 E-value=49 Score=23.65 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.7
Q ss_pred HHHcCCCHHHHHHhCCCC
Q 040436 57 TEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 57 a~~~~i~~~~l~~~Np~v 74 (91)
.++.|++.++|.+.||.+
T Consensus 91 ~~rlGl~ye~L~~~nP~L 108 (359)
T 2g04_A 91 CERLGIGPDDCASVNPRL 108 (359)
T ss_dssp HHHSSCSHHHHHHHCTTC
T ss_pred HHHhCCCHHHHHHhCCCe
Confidence 456799999999999987
No 99
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=24.76 E-value=48 Score=19.96 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=23.8
Q ss_pred ecCCCCHHHHHHHcCCCHHHHHHhCCCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~~~Np~v 74 (91)
...|.|..+|++..|++...+.+.+..+
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r~L 82 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNRSL 82 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHHHH
Confidence 4679999999999999999998877543
No 100
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens}
Probab=24.63 E-value=16 Score=20.57 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=24.2
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
|.|=+.+|+.+||++.-.+.++|.+.+
T Consensus 29 ~~If~d~tL~~iA~~~P~t~~eL~~i~ 55 (85)
T 2kv2_A 29 FNIFNTVTLKKLAESLSSDPEVLLQID 55 (85)
T ss_dssp HHHCCHHHHHHHHHHCCSCHHHHHTSS
T ss_pred ceeECHHHHHHHHHhCCCCHHHHhhCC
Confidence 677778899999999999999999877
No 101
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=24.43 E-value=69 Score=17.81 Aligned_cols=22 Identities=18% Similarity=0.139 Sum_probs=18.8
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi~i 33 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGLDL 33 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTCCC
T ss_pred EEEEECCCCcHHHHHHHcCCCC
Confidence 4578899999999999998764
No 102
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=24.42 E-value=69 Score=17.95 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=19.0
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i 35 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGIDL 35 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCc
Confidence 4578899999999999998764
No 103
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=24.39 E-value=74 Score=21.44 Aligned_cols=43 Identities=12% Similarity=0.026 Sum_probs=29.1
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhCCCCC----CCCCCCCCEEEE
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAINPNIN----CDAIFVGQWLCV 87 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~Np~v~----c~~l~~G~~lcv 87 (91)
-++-.|..+..+|+.+|++.+|+.+.--+-+ .-...||-.|..
T Consensus 108 PV~Y~gpDL~~vA~~~GLs~~eVi~~Hs~~~y~V~~lGF~PGfpyL~ 154 (228)
T 3mml_B 108 DVVYDGADLHEVASLTGMTPAQVIAAHTGTPWRVGFCGFAPGFAYLV 154 (228)
T ss_dssp EEECCCTTHHHHHHHHTSCHHHHHHHHHHSCEEEEEECSSTTCEEEE
T ss_pred eccCCCCCHHHHHHHhCcCHHHHHHHHhCCCEEEEEEecccCCcEec
Confidence 4444678999999999999999987653221 113555555543
No 104
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=24.26 E-value=69 Score=16.91 Aligned_cols=23 Identities=17% Similarity=0.243 Sum_probs=15.4
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.++
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~ 45 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNF 45 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHH
Confidence 44667777777777777665544
No 105
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=24.14 E-value=70 Score=17.91 Aligned_cols=22 Identities=9% Similarity=0.060 Sum_probs=19.0
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi~i 37 (98)
T 1czp_A 16 HEIEVPDDEYILDAAEEQGYDL 37 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCCHHHHHHHcCCCc
Confidence 4578899999999999998764
No 106
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=23.89 E-value=37 Score=25.32 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=20.9
Q ss_pred ecCCCCHHHHHHHcCCCHHH----HHHhCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDV----FLAINP 72 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~----l~~~Np 72 (91)
+..+||+.++|++.|++.+. +.++|.
T Consensus 441 ~~~~~ti~ela~~~gi~~~~l~~tv~~yn~ 470 (572)
T 1d4d_A 441 VKEGKTIEELAKQIDVPAAELAKTVTAYNG 470 (572)
T ss_dssp CEEESSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45789999999999999875 456664
No 107
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=23.77 E-value=60 Score=18.46 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=18.8
Q ss_pred ceEEecCCCCHHHHHHHcCCC
Q 040436 43 SVYGAQEGDTCSNVTEEFNLS 63 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~ 63 (91)
....+.+|+|+-+.+.+.|+.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 467899999999999999986
No 108
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=23.75 E-value=80 Score=15.84 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHcC--CCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFN--LSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~--i~~~~l~~~ 70 (91)
+.|-|-.++|++.| ++...+.++
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~ 43 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSY 43 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHH
Confidence 34667778888888 777776655
No 109
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=23.36 E-value=74 Score=17.85 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred ceEEecCCCCHHHHHHHcCCCH
Q 040436 43 SVYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 43 ~~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
..+.+.+|+|+-+.+.+.|+.+
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi~i 35 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNVEL 35 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCCcHHHHHHHcCCCC
Confidence 4578899999999999998764
No 110
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=23.07 E-value=74 Score=18.23 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=18.1
Q ss_pred eEEecCCCCHHHHHHHcCCCH
Q 040436 44 VYGAQEGDTCSNVTEEFNLST 64 (91)
Q Consensus 44 ~y~v~~GdTc~~Ia~~~~i~~ 64 (91)
...+.+|+|+-+.+.+.|+.+
T Consensus 19 ~~~~~~g~tlL~aa~~~gi~i 39 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGVDL 39 (109)
T ss_dssp EEEEETTCBHHHHHHHTTCCC
T ss_pred EEEECCCCcHHHHHHHcCCCC
Confidence 467899999999999998764
No 111
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.82 E-value=66 Score=18.03 Aligned_cols=19 Identities=16% Similarity=0.069 Sum_probs=15.2
Q ss_pred CCHHHHHHHcCCCHHHHHH
Q 040436 51 DTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~ 69 (91)
-|+.+||+..|++...|.+
T Consensus 19 ~~~~~lA~~~~~s~~~l~r 37 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFK 37 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
Confidence 4789999999988877654
No 112
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=22.73 E-value=83 Score=16.72 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=17.0
Q ss_pred CCHHHHHHHcCCCHHHHHHh
Q 040436 51 DTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~~ 70 (91)
-|..+||+..|++...+-++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ 29 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRA 29 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHH
Confidence 38999999999999887654
No 113
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=22.41 E-value=76 Score=17.07 Aligned_cols=18 Identities=0% Similarity=0.174 Sum_probs=14.5
Q ss_pred CHHHHHHHcCCCHHHHHH
Q 040436 52 TCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~ 69 (91)
....++++||++.++.+.
T Consensus 27 dI~~~a~kygV~kdeV~~ 44 (59)
T 2xvc_A 27 DIEHFSKVYGVEKQEVVK 44 (59)
T ss_dssp EHHHHHHHHCCCHHHHHH
T ss_pred eHHHHHHHhCCCHHHHHH
Confidence 357889999999988654
No 114
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=22.38 E-value=96 Score=18.07 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=9.2
Q ss_pred HHHHHHHcCCCHHHHHH
Q 040436 53 CSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 53 c~~Ia~~~~i~~~~l~~ 69 (91)
+..||+.+|++.++|..
T Consensus 58 l~~iA~~Lgv~~~~L~~ 74 (112)
T 2wus_R 58 IKRYSEFLELSPDEMLK 74 (112)
T ss_dssp HHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHhCcCHHHHHH
Confidence 34555556666655543
No 115
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=22.34 E-value=94 Score=16.24 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=19.6
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.+|
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~ 45 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAAL 45 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHhCcCHHHHHHH
Confidence 45778899999999999888876
No 116
>2yim_A Probable alpha-methylacyl-COA racemase MCR (2-methylacyl-COA racemase) (2-arylpropionyl-COA...; isomerase, methyl-COA racemase; HET: MC4; 1.41A {Mycobacterium tuberculosis} PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* 2gci_A*
Probab=22.14 E-value=54 Score=23.44 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.4
Q ss_pred HHHHcCCCHHHHHHhCCCC
Q 040436 56 VTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 56 Ia~~~~i~~~~l~~~Np~v 74 (91)
..++.|++.+++.+.||.+
T Consensus 88 ~~~rlGl~ye~L~~~nP~L 106 (360)
T 2yim_A 88 VTERLGLGPEECAKVNDRL 106 (360)
T ss_dssp HHHHHTCSHHHHHHHCTTC
T ss_pred hHhhcCCCHHHHHHhCCCe
Confidence 3566799999999999987
No 117
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=22.09 E-value=69 Score=18.32 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=15.3
Q ss_pred CHHHHHHHcCCCHHHHHHh
Q 040436 52 TCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~~ 70 (91)
-...+|+.||++.++|..-
T Consensus 6 I~~~Va~~f~i~~~dl~s~ 24 (94)
T 1j1v_A 6 IQKTVAEYYKIKVADLLSK 24 (94)
T ss_dssp HHHHHHHHTTCCHHHHHSC
T ss_pred HHHHHHHHhCCCHHHHhCC
Confidence 3567899999999999743
No 118
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=22.07 E-value=19 Score=22.92 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred ecCCCCHHHHHHHcCCCHHHHHHhCC
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFLAINP 72 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~~~Np 72 (91)
...|.+..+||+.+|++...++++=+
T Consensus 155 ~~~G~s~~~Ia~~l~vs~~Tvyr~l~ 180 (193)
T 3uj3_X 155 LAQGIPRKQVALIYDVALSTLYKKHP 180 (193)
T ss_dssp --------------------------
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35799999999999999999887643
No 119
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=21.95 E-value=15 Score=21.68 Aligned_cols=27 Identities=4% Similarity=-0.079 Sum_probs=23.8
Q ss_pred EEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 45 YGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 45 y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
|.|=+.+|+++||++.-.+.++|.+.+
T Consensus 37 y~If~D~tL~emA~~~P~t~~eL~~I~ 63 (103)
T 2e1f_A 37 AILATNKILVDMAKMRPTTVENVKRID 63 (103)
T ss_dssp HHHCCHHHHHHHHHHCCCSHHHHTTST
T ss_pred CeeECHHHHHHHHHhCCCCHHHHhcCC
Confidence 677788899999999999999998776
No 120
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=21.89 E-value=73 Score=15.58 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.2
Q ss_pred CHHHHHHHcCCCHHHHHH
Q 040436 52 TCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~ 69 (91)
-+..+|++.|++..++++
T Consensus 23 ~l~~~a~~~g~s~s~~ir 40 (55)
T 2k9i_A 23 RLMEIAKEKNLTLSDVCR 40 (55)
T ss_dssp HHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHH
Confidence 467788888999988764
No 121
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=21.78 E-value=63 Score=17.49 Aligned_cols=19 Identities=5% Similarity=0.036 Sum_probs=16.6
Q ss_pred CHHHHHHHcCCCHHHHHHh
Q 040436 52 TCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~~ 70 (91)
|..++|+..|++...|..|
T Consensus 7 ~i~e~A~~~gvs~~tlR~y 25 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAW 25 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHH
Confidence 5678999999999998776
No 122
>1xk7_A Crotonobetainyl-COA:carnitine COA-transferase; CAIB, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1xk6_A 1xvt_A* 1xvu_A* 1xvv_A* 1xa3_A* 1xa4_A*
Probab=21.74 E-value=63 Score=23.47 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=16.5
Q ss_pred HHHHcCCCHHHHHHhCCCC
Q 040436 56 VTEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 56 Ia~~~~i~~~~l~~~Np~v 74 (91)
..++.|++.++|.+.||.+
T Consensus 103 ~~~rlGL~ye~L~~~nP~L 121 (408)
T 1xk7_A 103 AFARRGITDEVLWQHNPKL 121 (408)
T ss_dssp HHHHTTCCHHHHHHHCTTC
T ss_pred HHHHcCCCHHHHHHhCCCe
Confidence 4556899999999999987
No 123
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=21.73 E-value=84 Score=16.32 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=8.6
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 040436 50 GDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~ 69 (91)
|-|-.++|++.|++...+.+
T Consensus 23 glsq~~lA~~~gis~~~i~~ 42 (84)
T 2ef8_A 23 SLSQSELAIFLGLSQSDISK 42 (84)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 33444444444444444333
No 124
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=21.70 E-value=84 Score=18.70 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=19.4
Q ss_pred ecCCCCHHHHHHHcCCCHHHHH
Q 040436 47 AQEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 47 v~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
.+.|-++.+||++=|++..+++
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~ 50 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELL 50 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHH
T ss_pred HHcCCCHHHHHHHcCCCHHHHH
Confidence 5689999999999999988765
No 125
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.67 E-value=1e+02 Score=17.94 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=17.9
Q ss_pred cCCCCHHHHHHHcCCCHHHHH
Q 040436 48 QEGDTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~ 68 (91)
-.|-|..+||+..|++...+.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~ 59 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVY 59 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHH
Confidence 468899999999999987654
No 126
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=21.62 E-value=80 Score=17.65 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=15.7
Q ss_pred CCCHHHHHHHcCCCHHHHHH
Q 040436 50 GDTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~ 69 (91)
.-++.++|+..|++...|.+
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r 39 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSH 39 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
Confidence 34899999999998877654
No 127
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=21.58 E-value=72 Score=17.72 Aligned_cols=23 Identities=9% Similarity=0.144 Sum_probs=19.1
Q ss_pred EecCC-CCHHHHHHHcCCCHHHHH
Q 040436 46 GAQEG-DTCSNVTEEFNLSTDVFL 68 (91)
Q Consensus 46 ~v~~G-dTc~~Ia~~~~i~~~~l~ 68 (91)
.|+.| -+-..-|++|||+-..|.
T Consensus 25 aVr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 25 VVMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp HHHTTSSCHHHHHHHHTCCHHHHH
T ss_pred HHHcCCccHHHHHHHhCCChHHHH
Confidence 46778 599999999999988765
No 128
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.46 E-value=71 Score=17.93 Aligned_cols=19 Identities=5% Similarity=0.139 Sum_probs=15.2
Q ss_pred CCHHHHHHHcCCCHHHHHH
Q 040436 51 DTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~ 69 (91)
-++.+||+..|++...|.+
T Consensus 22 ~~~~~lA~~~~~S~~~l~r 40 (108)
T 3oou_A 22 MSLKTLGNDFHINAVYLGQ 40 (108)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4789999999988877654
No 129
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=21.35 E-value=88 Score=16.34 Aligned_cols=23 Identities=9% Similarity=0.071 Sum_probs=18.4
Q ss_pred cCCCCHHHHHHHcCCCHHHHHHh
Q 040436 48 QEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 48 ~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
+.|-|-.++|++.|++...+.++
T Consensus 25 ~~gltq~elA~~~gis~~~is~~ 47 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKT 47 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 45778888899988888887776
No 130
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.24 E-value=64 Score=17.94 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=24.8
Q ss_pred eEEecCCCCHHHHHHHcCCCHHHHHHhC
Q 040436 44 VYGAQEGDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 44 ~y~v~~GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
.|....++.+..+..+-+++.++++.|=
T Consensus 27 ~hk~L~EeDl~~L~~kskms~qqvkdwF 54 (70)
T 2ys9_A 27 AHQQLRETDIPQLSQASRLSTQQVLDWF 54 (70)
T ss_dssp HTCCCCTTHHHHHHHHTTCCHHHHHHHH
T ss_pred HhcccchhhHHHHHHHhCCCHHHHHHHH
Confidence 4888899999999999999999988763
No 131
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=21.20 E-value=96 Score=16.64 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=17.2
Q ss_pred EecCCCCHHHHHHHcCCCHHHHHHh
Q 040436 46 GAQEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..+.|-|-.++|++.|++...+.+|
T Consensus 22 r~~~glsq~~lA~~~gis~~~is~~ 46 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADY 46 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHH
Confidence 3455777788888888777766554
No 132
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A {Acetobacter aceti}
Probab=21.15 E-value=65 Score=23.84 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=15.4
Q ss_pred HHHcCCCHHHHHHhCCCC
Q 040436 57 TEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 57 a~~~~i~~~~l~~~Np~v 74 (91)
.++.|++.++|.+.||.+
T Consensus 128 ~erlGL~ye~L~~~NP~L 145 (456)
T 3ubm_A 128 MERMGFTWEYLQQLNPRL 145 (456)
T ss_dssp HHHTTCCHHHHHHHCTTC
T ss_pred HHHhCCCHHHHHHhCCCc
Confidence 345689999999999987
No 133
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Probab=21.05 E-value=66 Score=23.69 Aligned_cols=18 Identities=11% Similarity=0.416 Sum_probs=15.5
Q ss_pred HHHcCCCHHHHHHhCCCC
Q 040436 57 TEEFNLSTDVFLAINPNI 74 (91)
Q Consensus 57 a~~~~i~~~~l~~~Np~v 74 (91)
.++.|++.++|.+.||.+
T Consensus 102 ~erlGL~ye~L~~~NP~L 119 (428)
T 2vjq_A 102 LDRMGFTWEYIQELNPRV 119 (428)
T ss_dssp HHHTTCCHHHHHHHCTTC
T ss_pred HHHcCCCHHHHHhhCCCe
Confidence 345799999999999987
No 134
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=21.01 E-value=73 Score=18.05 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=15.3
Q ss_pred CCHHHHHHHcCCCHHHHHH
Q 040436 51 DTCSNVTEEFNLSTDVFLA 69 (91)
Q Consensus 51 dTc~~Ia~~~~i~~~~l~~ 69 (91)
-++.+||+..|++...|.+
T Consensus 24 ~~~~~lA~~~~~S~~~l~r 42 (113)
T 3oio_A 24 LSTDDIAYYVGVSRRQLER 42 (113)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHH
Confidence 4889999999988877654
No 135
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=20.57 E-value=92 Score=17.18 Aligned_cols=16 Identities=6% Similarity=0.318 Sum_probs=13.5
Q ss_pred CHHHHHHHcCCCHHHH
Q 040436 52 TCSNVTEEFNLSTDVF 67 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l 67 (91)
+..+||++++++.+.+
T Consensus 18 sv~eLa~~l~VS~~TI 33 (78)
T 1xn7_A 18 EAAQISQTLNTPQPMI 33 (78)
T ss_dssp CHHHHHHHTTCCHHHH
T ss_pred cHHHHHHHHCcCHHHH
Confidence 7889999999997653
No 136
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.35 E-value=1.2e+02 Score=16.92 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=15.2
Q ss_pred CCC--CHHHHHHHcCCCHHH
Q 040436 49 EGD--TCSNVTEEFNLSTDV 66 (91)
Q Consensus 49 ~Gd--Tc~~Ia~~~~i~~~~ 66 (91)
+|+ |...||++.|++-.+
T Consensus 26 ~~~~~Ta~~IAkkLg~sK~~ 45 (75)
T 1sfu_A 26 TNDYTTAISLSNRLKINKKK 45 (75)
T ss_dssp TTCEECHHHHHHHTTCCHHH
T ss_pred CCcchHHHHHHHHHCCCHHH
Confidence 455 899999999999865
No 137
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=20.23 E-value=84 Score=16.32 Aligned_cols=20 Identities=0% Similarity=-0.047 Sum_probs=17.3
Q ss_pred CHHHHHHHcCCCHHHHHHhC
Q 040436 52 TCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 52 Tc~~Ia~~~~i~~~~l~~~N 71 (91)
+..++++..|++...++++=
T Consensus 12 ~~~eva~~lgvsrstiy~~~ 31 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRI 31 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 67899999999999988764
No 138
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=20.15 E-value=1e+02 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.382 Sum_probs=16.6
Q ss_pred ecCCC---CHHHHHHHcCCCHHHH
Q 040436 47 AQEGD---TCSNVTEEFNLSTDVF 67 (91)
Q Consensus 47 v~~Gd---Tc~~Ia~~~~i~~~~l 67 (91)
..+|| +..++|++||++...+
T Consensus 27 ~~~G~~lPs~~~La~~~~vSr~tv 50 (113)
T 3tqn_A 27 YVEGEMIPSIRKISTEYQINPLTV 50 (113)
T ss_dssp SCTTCEECCHHHHHHHHTCCHHHH
T ss_pred CCCCCcCcCHHHHHHHHCcCHHHH
Confidence 35687 7789999999997654
No 139
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=20.10 E-value=79 Score=18.41 Aligned_cols=22 Identities=9% Similarity=0.147 Sum_probs=17.1
Q ss_pred CCCHHHHHHHcCCCHHHHHHhC
Q 040436 50 GDTCSNVTEEFNLSTDVFLAIN 71 (91)
Q Consensus 50 GdTc~~Ia~~~~i~~~~l~~~N 71 (91)
.+-...+|+.||++.++|..-.
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~ 29 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPG 29 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSC
T ss_pred HHHHHHHHHHHCCCHHHHhCCC
Confidence 3456778999999999997543
No 140
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=20.03 E-value=1.1e+02 Score=16.41 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=19.4
Q ss_pred EecCCCCHHHHHHHcCCCHHHHHHh
Q 040436 46 GAQEGDTCSNVTEEFNLSTDVFLAI 70 (91)
Q Consensus 46 ~v~~GdTc~~Ia~~~~i~~~~l~~~ 70 (91)
..+.|-|-.++|++.|++...+.++
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~ 47 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKV 47 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHH
Confidence 3456778888888888888877776
Done!