Query 040440
Match_columns 355
No_of_seqs 794 out of 2397
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 08:29:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040440.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040440hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 5.3E-26 1.1E-30 196.9 16.2 210 105-324 210-420 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 2.4E-24 5.2E-29 186.8 21.9 219 105-327 244-491 (966)
3 TIGR00990 3a0801s09 mitochondr 99.9 2.4E-21 5.2E-26 181.9 27.5 188 130-325 309-500 (615)
4 TIGR00990 3a0801s09 mitochondr 99.9 3.3E-21 7.1E-26 181.0 27.1 218 105-325 357-575 (615)
5 KOG1126 DNA-binding cell divis 99.9 5.6E-22 1.2E-26 173.8 18.2 198 127-332 365-597 (638)
6 KOG1126 DNA-binding cell divis 99.9 6.3E-22 1.4E-26 173.5 15.9 209 107-326 415-625 (638)
7 PRK12370 invasion protein regu 99.9 2.3E-20 5.1E-25 172.3 25.6 191 130-328 276-477 (553)
8 KOG1155 Anaphase-promoting com 99.9 2.9E-20 6.2E-25 156.5 23.3 218 126-350 273-526 (559)
9 PRK15174 Vi polysaccharide exp 99.9 1.8E-19 4E-24 169.0 27.4 222 106-331 69-323 (656)
10 TIGR02521 type_IV_pilW type IV 99.9 5.7E-19 1.2E-23 145.8 27.3 184 130-321 46-232 (234)
11 PRK09782 bacteriophage N4 rece 99.9 2.8E-19 6E-24 171.9 28.0 208 126-343 520-728 (987)
12 PRK15174 Vi polysaccharide exp 99.9 4.8E-19 1E-23 166.3 27.9 217 105-327 102-353 (656)
13 KOG0547 Translocase of outer m 99.9 4.5E-20 9.8E-25 156.3 18.5 221 101-325 348-570 (606)
14 COG3063 PilF Tfp pilus assembl 99.9 5.5E-19 1.2E-23 136.3 22.2 165 151-323 37-204 (250)
15 PRK11447 cellulose synthase su 99.9 4.7E-19 1E-23 176.9 28.3 196 126-328 280-531 (1157)
16 KOG1155 Anaphase-promoting com 99.8 4.3E-19 9.3E-24 149.5 21.9 198 130-335 345-550 (559)
17 KOG1173 Anaphase-promoting com 99.8 8.6E-19 1.9E-23 151.1 23.2 208 130-338 327-535 (611)
18 PRK11189 lipoprotein NlpI; Pro 99.8 1.3E-18 2.9E-23 148.0 24.3 188 126-325 74-269 (296)
19 PRK11788 tetratricopeptide rep 99.8 1.7E-18 3.6E-23 154.5 26.2 191 127-325 47-247 (389)
20 PRK11788 tetratricopeptide rep 99.8 1.8E-18 3.8E-23 154.4 25.8 198 126-332 117-322 (389)
21 TIGR02521 type_IV_pilW type IV 99.8 3.5E-18 7.7E-23 141.0 25.5 173 148-328 30-205 (234)
22 COG3063 PilF Tfp pilus assembl 99.8 6.2E-18 1.4E-22 130.5 23.8 197 126-330 45-245 (250)
23 PRK11447 cellulose synthase su 99.8 2.5E-18 5.5E-23 171.7 28.0 213 109-328 381-673 (1157)
24 TIGR02917 PEP_TPR_lipo putativ 99.8 3E-18 6.5E-23 168.8 28.2 191 130-328 480-671 (899)
25 KOG1125 TPR repeat-containing 99.8 4.9E-19 1.1E-23 153.2 18.2 191 126-324 296-530 (579)
26 PRK12370 invasion protein regu 99.8 2.5E-18 5.5E-23 158.8 23.7 182 130-321 319-502 (553)
27 TIGR02917 PEP_TPR_lipo putativ 99.8 8.5E-18 1.8E-22 165.5 28.4 195 130-326 582-804 (899)
28 KOG0547 Translocase of outer m 99.8 2.4E-18 5.2E-23 145.9 20.0 199 128-334 339-545 (606)
29 PRK09782 bacteriophage N4 rece 99.8 1.3E-17 2.7E-22 160.6 24.2 192 126-326 553-745 (987)
30 PF13429 TPR_15: Tetratricopep 99.8 1.4E-18 3E-23 147.5 14.4 187 126-321 88-277 (280)
31 KOG2076 RNA polymerase III tra 99.8 4.6E-17 1E-21 147.5 24.5 115 119-233 143-257 (895)
32 TIGR03302 OM_YfiO outer membra 99.8 8E-17 1.7E-21 133.3 23.8 174 126-323 44-234 (235)
33 PLN02789 farnesyltranstransfer 99.8 1.4E-16 2.9E-21 135.4 23.4 200 130-337 52-266 (320)
34 PF13429 TPR_15: Tetratricopep 99.8 6.7E-18 1.4E-22 143.4 13.7 200 129-338 58-260 (280)
35 PRK10049 pgaA outer membrane p 99.8 2.1E-16 4.6E-21 151.5 25.0 199 126-332 248-467 (765)
36 KOG1129 TPR repeat-containing 99.8 2E-17 4.4E-22 133.8 13.6 196 126-325 266-462 (478)
37 KOG2003 TPR repeat-containing 99.7 6.9E-16 1.5E-20 130.3 21.2 202 125-334 500-702 (840)
38 KOG1125 TPR repeat-containing 99.7 3E-16 6.5E-21 136.1 19.5 175 153-328 289-500 (579)
39 KOG0624 dsRNA-activated protei 99.7 2.8E-15 6E-20 122.3 22.5 193 126-326 49-257 (504)
40 PRK11189 lipoprotein NlpI; Pro 99.7 2.4E-15 5.3E-20 128.0 23.1 177 130-319 41-222 (296)
41 PRK10747 putative protoheme IX 99.7 3.4E-15 7.3E-20 132.6 24.4 193 125-327 128-363 (398)
42 PRK10049 pgaA outer membrane p 99.7 4.4E-15 9.5E-20 142.5 26.6 205 116-325 52-305 (765)
43 KOG2002 TPR-containing nuclear 99.7 1.1E-15 2.3E-20 139.8 21.0 196 126-329 175-379 (1018)
44 KOG1174 Anaphase-promoting com 99.7 3E-15 6.5E-20 124.9 20.2 198 130-329 281-508 (564)
45 PRK10370 formate-dependent nit 99.7 2.1E-15 4.5E-20 120.0 18.2 133 162-333 52-185 (198)
46 PLN02789 farnesyltranstransfer 99.7 4.6E-15 1E-19 126.1 20.6 174 159-338 47-229 (320)
47 PRK15359 type III secretion sy 99.7 1.3E-15 2.9E-20 114.9 15.4 126 135-304 13-138 (144)
48 KOG1840 Kinesin light chain [C 99.7 3.5E-15 7.5E-20 132.4 19.5 198 124-322 207-439 (508)
49 COG2956 Predicted N-acetylgluc 99.7 1.9E-14 4.2E-19 116.5 21.8 187 130-325 50-247 (389)
50 TIGR00540 hemY_coli hemY prote 99.7 2E-14 4.4E-19 128.3 24.4 201 126-327 95-372 (409)
51 PRK10747 putative protoheme IX 99.7 1.6E-14 3.5E-19 128.3 23.6 185 126-322 164-391 (398)
52 KOG0624 dsRNA-activated protei 99.7 2.4E-14 5.2E-19 116.9 21.1 213 124-337 164-386 (504)
53 KOG2002 TPR-containing nuclear 99.7 4.3E-14 9.2E-19 129.6 24.3 211 128-340 320-578 (1018)
54 KOG0548 Molecular co-chaperone 99.7 1.5E-14 3.2E-19 124.7 20.1 209 122-339 231-473 (539)
55 COG5010 TadD Flp pilus assembl 99.7 9.3E-14 2E-18 109.9 22.5 183 129-319 47-229 (257)
56 KOG0548 Molecular co-chaperone 99.7 7.7E-14 1.7E-18 120.4 23.5 104 124-227 11-114 (539)
57 KOG2003 TPR repeat-containing 99.7 8.5E-15 1.8E-19 123.8 16.6 191 130-328 471-662 (840)
58 KOG1173 Anaphase-promoting com 99.6 2.5E-14 5.4E-19 124.0 19.6 204 124-328 253-491 (611)
59 TIGR00540 hemY_coli hemY prote 99.6 7.8E-14 1.7E-18 124.5 23.6 184 129-321 167-399 (409)
60 KOG1840 Kinesin light chain [C 99.6 6.8E-14 1.5E-18 124.3 21.9 178 144-322 194-397 (508)
61 KOG1129 TPR repeat-containing 99.6 1.2E-14 2.5E-19 118.0 15.3 188 130-326 238-429 (478)
62 KOG3060 Uncharacterized conser 99.6 6.7E-13 1.4E-17 104.2 24.4 192 126-325 23-224 (289)
63 PRK14574 hmsH outer membrane p 99.6 9.5E-14 2E-18 131.6 23.6 185 125-318 44-229 (822)
64 PRK15359 type III secretion sy 99.6 3.8E-14 8.1E-19 107.0 15.9 120 203-333 13-133 (144)
65 KOG0495 HAT repeat protein [RN 99.6 5.3E-13 1.1E-17 117.7 22.8 188 129-325 598-786 (913)
66 PRK15179 Vi polysaccharide bio 99.6 4.8E-13 1E-17 124.6 23.6 144 138-322 75-218 (694)
67 PRK14574 hmsH outer membrane p 99.6 5.2E-13 1.1E-17 126.7 23.0 178 144-330 29-207 (822)
68 KOG4162 Predicted calmodulin-b 99.6 5.8E-13 1.3E-17 119.5 21.7 86 131-216 460-546 (799)
69 PRK10370 formate-dependent nit 99.6 1.7E-13 3.8E-18 109.0 16.7 114 129-250 53-169 (198)
70 PLN03081 pentatricopeptide (PP 99.6 2.2E-14 4.8E-19 137.0 13.5 267 35-321 284-557 (697)
71 KOG3060 Uncharacterized conser 99.6 9.9E-13 2.1E-17 103.3 20.0 171 126-304 63-237 (289)
72 cd05804 StaR_like StaR_like; a 99.6 8.9E-13 1.9E-17 116.2 22.4 203 110-324 3-218 (355)
73 TIGR03302 OM_YfiO outer membra 99.6 3.9E-13 8.5E-18 111.2 18.9 165 145-326 29-200 (235)
74 PRK15179 Vi polysaccharide bio 99.6 4.6E-13 1E-17 124.8 21.2 134 111-247 84-217 (694)
75 cd05804 StaR_like StaR_like; a 99.6 1.4E-12 3E-17 114.9 23.1 157 124-289 52-217 (355)
76 KOG0495 HAT repeat protein [RN 99.6 2E-12 4.4E-17 114.1 23.1 201 126-327 526-754 (913)
77 TIGR02552 LcrH_SycD type III s 99.6 2.6E-13 5.6E-18 102.0 15.2 122 204-333 4-126 (135)
78 PLN03081 pentatricopeptide (PP 99.6 1.2E-13 2.7E-18 131.9 16.5 182 126-320 269-454 (697)
79 PRK14720 transcript cleavage f 99.6 1E-12 2.2E-17 123.5 21.8 193 109-328 27-259 (906)
80 KOG1156 N-terminal acetyltrans 99.5 1.4E-12 3.1E-17 114.9 20.1 210 126-336 18-263 (700)
81 PLN03218 maturation of RBCL 1; 99.5 8.3E-12 1.8E-16 121.8 27.4 200 126-328 517-757 (1060)
82 PLN03077 Protein ECB2; Provisi 99.5 2.7E-13 5.9E-18 132.6 17.3 264 37-321 451-720 (857)
83 KOG0550 Molecular chaperone (D 99.5 3.9E-13 8.4E-18 112.5 15.1 191 147-346 167-374 (486)
84 KOG0553 TPR repeat-containing 99.5 1.5E-13 3.4E-18 110.8 11.9 109 124-232 90-198 (304)
85 PLN03218 maturation of RBCL 1; 99.5 1.4E-11 3.1E-16 120.2 27.7 184 130-321 452-643 (1060)
86 TIGR02552 LcrH_SycD type III s 99.5 8.5E-13 1.8E-17 99.2 14.7 107 136-250 4-110 (135)
87 PLN03077 Protein ECB2; Provisi 99.5 3.9E-13 8.4E-18 131.5 15.7 277 32-332 244-596 (857)
88 COG4783 Putative Zn-dependent 99.5 2E-11 4.3E-16 104.8 22.5 152 146-322 303-455 (484)
89 KOG1174 Anaphase-promoting com 99.5 5.2E-12 1.1E-16 105.9 18.1 192 126-325 243-471 (564)
90 COG4783 Putative Zn-dependent 99.5 9.4E-12 2E-16 106.8 19.9 148 124-295 315-462 (484)
91 COG2956 Predicted N-acetylgluc 99.5 3.2E-11 6.9E-16 98.2 21.5 205 109-325 65-282 (389)
92 PRK10866 outer membrane biogen 99.5 1.1E-10 2.4E-15 95.9 24.3 167 125-318 42-238 (243)
93 COG4235 Cytochrome c biogenesi 99.5 8.5E-12 1.8E-16 101.5 17.3 137 165-339 138-274 (287)
94 KOG2376 Signal recognition par 99.5 2.2E-11 4.9E-16 106.4 20.8 200 129-340 26-272 (652)
95 COG5010 TadD Flp pilus assembl 99.5 2.7E-11 5.9E-16 96.1 19.4 158 167-333 51-209 (257)
96 KOG0553 TPR repeat-containing 99.5 2.7E-12 5.9E-17 103.7 13.8 115 150-272 82-197 (304)
97 PRK15363 pathogenicity island 99.4 4.3E-12 9.4E-17 94.1 13.2 106 142-248 27-133 (157)
98 PF12569 NARP1: NMDA receptor- 99.4 1.6E-10 3.4E-15 104.3 25.6 199 127-325 16-261 (517)
99 PLN03088 SGT1, suppressor of 99.4 5.7E-12 1.2E-16 109.8 14.7 107 124-230 11-117 (356)
100 COG3071 HemY Uncharacterized e 99.4 1.6E-10 3.4E-15 96.8 22.2 200 126-328 95-364 (400)
101 PF13525 YfiO: Outer membrane 99.4 4.3E-11 9.3E-16 96.1 18.2 164 148-311 4-197 (203)
102 KOG3785 Uncharacterized conser 99.4 1.4E-10 3.1E-15 95.7 21.0 195 126-335 33-228 (557)
103 KOG2076 RNA polymerase III tra 99.4 1.4E-10 3E-15 106.3 23.0 165 149-321 139-309 (895)
104 KOG0550 Molecular chaperone (D 99.4 2E-11 4.3E-16 102.5 15.8 153 130-290 184-353 (486)
105 KOG1127 TPR repeat-containing 99.4 2.3E-11 5.1E-16 112.1 17.4 187 130-324 473-662 (1238)
106 PRK15363 pathogenicity island 99.4 4.2E-11 9.2E-16 88.8 15.2 111 210-328 27-139 (157)
107 PF14938 SNAP: Soluble NSF att 99.4 1.1E-10 2.4E-15 98.8 18.9 176 152-329 38-233 (282)
108 KOG1156 N-terminal acetyltrans 99.4 1.2E-10 2.5E-15 103.1 19.3 196 129-325 55-287 (700)
109 PF09976 TPR_21: Tetratricopep 99.4 9.4E-11 2E-15 88.9 16.5 116 161-284 23-144 (145)
110 PRK14720 transcript cleavage f 99.4 1.1E-10 2.3E-15 110.2 19.8 161 143-328 25-205 (906)
111 PF04733 Coatomer_E: Coatomer 99.3 1.7E-11 3.7E-16 103.1 12.4 188 130-328 81-272 (290)
112 PLN03088 SGT1, suppressor of 99.3 8.1E-11 1.8E-15 102.7 16.3 113 152-305 5-117 (356)
113 PRK02603 photosystem I assembl 99.3 1.4E-10 3E-15 90.8 15.8 119 146-291 32-153 (172)
114 CHL00033 ycf3 photosystem I as 99.3 1.4E-10 3E-15 90.5 15.2 103 130-232 14-121 (168)
115 KOG4340 Uncharacterized conser 99.3 1.4E-10 3E-15 93.6 14.7 184 129-321 24-207 (459)
116 PF13414 TPR_11: TPR repeat; P 99.3 2.7E-11 5.8E-16 79.3 8.4 68 147-214 1-69 (69)
117 KOG1127 TPR repeat-containing 99.3 8.2E-11 1.8E-15 108.6 14.1 205 105-320 484-699 (1238)
118 COG4235 Cytochrome c biogenesi 99.3 8E-10 1.7E-14 90.2 18.2 113 130-250 137-252 (287)
119 PF13414 TPR_11: TPR repeat; P 99.3 2.7E-11 5.9E-16 79.3 8.0 67 257-323 2-69 (69)
120 KOG1128 Uncharacterized conser 99.2 1.8E-10 3.8E-15 103.4 14.2 176 130-322 413-617 (777)
121 KOG1915 Cell cycle control pro 99.2 7.1E-09 1.5E-13 89.0 23.0 208 130-347 88-298 (677)
122 PRK10153 DNA-binding transcrip 99.2 1.3E-09 2.9E-14 98.9 19.0 149 179-328 333-489 (517)
123 PF13432 TPR_16: Tetratricopep 99.2 6.5E-11 1.4E-15 76.4 7.4 64 263-326 2-65 (65)
124 KOG1130 Predicted G-alpha GTPa 99.2 6.4E-11 1.4E-15 99.5 9.0 196 126-321 28-264 (639)
125 PF13432 TPR_16: Tetratricopep 99.2 1.1E-10 2.4E-15 75.3 8.0 65 153-217 1-65 (65)
126 KOG1070 rRNA processing protei 99.2 4.9E-09 1.1E-13 100.3 21.7 214 134-352 1443-1694(1710)
127 PF12895 Apc3: Anaphase-promot 99.2 6.4E-11 1.4E-15 80.7 7.0 80 129-209 3-84 (84)
128 COG4105 ComL DNA uptake lipopr 99.2 1.5E-08 3.2E-13 81.1 21.0 178 148-325 33-237 (254)
129 KOG1128 Uncharacterized conser 99.2 1.1E-09 2.3E-14 98.5 15.9 172 144-325 393-586 (777)
130 PRK10866 outer membrane biogen 99.2 4.3E-09 9.2E-14 86.6 18.3 164 148-334 31-217 (243)
131 PF12569 NARP1: NMDA receptor- 99.2 2.4E-08 5.2E-13 90.4 24.6 129 185-321 196-334 (517)
132 KOG1130 Predicted G-alpha GTPa 99.2 2.1E-10 4.6E-15 96.5 10.4 192 129-321 109-344 (639)
133 COG4785 NlpI Lipoprotein NlpI, 99.1 6.4E-09 1.4E-13 80.3 16.5 180 131-323 81-268 (297)
134 KOG1915 Cell cycle control pro 99.1 2E-08 4.2E-13 86.3 20.8 184 135-327 59-242 (677)
135 TIGR02795 tol_pal_ybgF tol-pal 99.1 2.1E-09 4.5E-14 78.6 13.4 104 217-328 2-112 (119)
136 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.9E-09 4.1E-14 78.9 13.2 89 130-218 17-111 (119)
137 CHL00033 ycf3 photosystem I as 99.1 4.4E-09 9.4E-14 82.0 15.7 126 163-326 13-154 (168)
138 KOG2376 Signal recognition par 99.1 1.3E-08 2.8E-13 89.6 19.6 160 150-320 13-203 (652)
139 PF09976 TPR_21: Tetratricopep 99.1 9.3E-09 2E-13 78.0 15.9 116 195-319 23-145 (145)
140 PRK10803 tol-pal system protei 99.1 9.9E-09 2.1E-13 85.0 16.5 57 269-325 191-250 (263)
141 PF12895 Apc3: Anaphase-promot 99.1 8.6E-10 1.9E-14 75.1 8.4 69 163-232 3-73 (84)
142 KOG0543 FKBP-type peptidyl-pro 99.1 5.4E-09 1.2E-13 88.4 14.6 125 185-335 210-334 (397)
143 cd00189 TPR Tetratricopeptide 99.1 3.4E-09 7.5E-14 73.8 11.3 98 219-324 2-100 (100)
144 cd00189 TPR Tetratricopeptide 99.1 4E-09 8.8E-14 73.4 11.6 82 151-232 2-83 (100)
145 PRK10803 tol-pal system protei 99.1 6.2E-09 1.3E-13 86.2 14.2 93 128-220 156-254 (263)
146 KOG1586 Protein required for f 99.1 2.3E-07 4.9E-12 72.7 21.6 187 130-331 29-234 (288)
147 KOG4162 Predicted calmodulin-b 99.1 6.9E-08 1.5E-12 87.6 21.6 179 147-326 321-512 (799)
148 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 8E-09 1.7E-13 89.9 15.2 117 191-318 177-294 (395)
149 PF13525 YfiO: Outer membrane 99.0 1E-07 2.2E-12 76.6 20.1 149 182-338 4-187 (203)
150 PRK11906 transcriptional regul 99.0 2.3E-08 5E-13 86.8 17.1 103 130-232 273-387 (458)
151 PRK15331 chaperone protein Sic 99.0 6.9E-09 1.5E-13 77.5 11.9 99 144-250 32-130 (165)
152 PRK02603 photosystem I assembl 99.0 1.9E-08 4.1E-13 78.7 15.0 107 181-325 33-153 (172)
153 PF14559 TPR_19: Tetratricopep 99.0 1.9E-09 4.1E-14 70.2 7.0 65 160-224 2-66 (68)
154 PRK10153 DNA-binding transcrip 99.0 7.1E-08 1.5E-12 87.9 19.2 140 145-293 333-488 (517)
155 PRK15331 chaperone protein Sic 99.0 1.8E-08 3.8E-13 75.3 12.4 110 211-329 31-141 (165)
156 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 2.6E-08 5.6E-13 86.8 15.4 111 130-251 184-294 (395)
157 COG0457 NrfG FOG: TPR repeat [ 99.0 6E-07 1.3E-11 73.8 23.1 188 129-324 73-268 (291)
158 KOG0543 FKBP-type peptidyl-pro 99.0 2.3E-08 4.9E-13 84.7 14.1 107 126-232 219-340 (397)
159 PF04733 Coatomer_E: Coatomer 99.0 1.7E-08 3.7E-13 85.1 13.5 154 128-294 115-272 (290)
160 PF13371 TPR_9: Tetratricopept 99.0 6.3E-09 1.4E-13 68.8 8.6 69 156-224 2-70 (73)
161 PF13371 TPR_9: Tetratricopept 99.0 6.7E-09 1.4E-13 68.6 8.5 65 264-328 1-65 (73)
162 PF14559 TPR_19: Tetratricopep 98.9 2.9E-09 6.4E-14 69.3 6.6 63 269-331 2-64 (68)
163 PRK11906 transcriptional regul 98.9 2.1E-07 4.5E-12 81.0 19.2 157 153-317 259-432 (458)
164 PF12688 TPR_5: Tetratrico pep 98.9 1.1E-07 2.4E-12 68.5 14.4 91 150-248 2-98 (120)
165 PF14938 SNAP: Soluble NSF att 98.9 2.2E-08 4.7E-13 84.9 12.7 144 163-322 29-185 (282)
166 PRK04841 transcriptional regul 98.9 6.1E-07 1.3E-11 89.1 23.5 195 128-323 422-643 (903)
167 KOG3081 Vesicle coat complex C 98.9 9.4E-07 2E-11 70.7 19.6 167 148-327 107-277 (299)
168 KOG2053 Mitochondrial inherita 98.9 1.8E-06 4E-11 79.9 24.2 199 126-325 20-259 (932)
169 KOG4648 Uncharacterized conser 98.9 2.6E-09 5.7E-14 88.0 4.8 202 126-328 108-337 (536)
170 COG1729 Uncharacterized protei 98.8 1.5E-07 3.2E-12 76.2 13.4 98 125-222 151-254 (262)
171 COG4700 Uncharacterized protei 98.8 2E-06 4.2E-11 65.2 18.3 150 130-320 71-221 (251)
172 COG0457 NrfG FOG: TPR repeat [ 98.8 5E-06 1.1E-10 68.2 23.2 187 130-324 38-234 (291)
173 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 7.6E-08 1.6E-12 83.5 11.4 70 144-213 70-142 (453)
174 PF12688 TPR_5: Tetratrico pep 98.8 5.4E-07 1.2E-11 64.9 13.9 99 184-320 2-103 (120)
175 COG4105 ComL DNA uptake lipopr 98.8 3.4E-06 7.4E-11 67.8 19.3 164 125-292 44-238 (254)
176 KOG4340 Uncharacterized conser 98.8 3.4E-07 7.3E-12 74.4 13.7 157 159-325 20-177 (459)
177 PF13512 TPR_18: Tetratricopep 98.8 2.3E-07 5E-12 67.9 11.7 96 124-219 19-135 (142)
178 KOG3785 Uncharacterized conser 98.8 3.5E-06 7.6E-11 70.3 19.7 178 126-319 68-246 (557)
179 KOG2796 Uncharacterized conser 98.8 4.9E-06 1.1E-10 66.6 19.6 140 185-325 179-319 (366)
180 COG4700 Uncharacterized protei 98.7 2.2E-06 4.7E-11 65.0 16.2 106 126-232 100-208 (251)
181 KOG3081 Vesicle coat complex C 98.7 8.3E-06 1.8E-10 65.5 20.1 196 118-328 11-243 (299)
182 KOG1941 Acetylcholine receptor 98.7 6.8E-07 1.5E-11 74.6 14.6 197 125-322 92-321 (518)
183 PF13512 TPR_18: Tetratricopep 98.7 7E-07 1.5E-11 65.4 12.8 120 148-293 9-134 (142)
184 PRK04841 transcriptional regul 98.7 3.9E-06 8.4E-11 83.5 22.5 173 150-323 410-604 (903)
185 COG3071 HemY Uncharacterized e 98.7 6.5E-06 1.4E-10 69.7 19.9 196 124-321 127-390 (400)
186 KOG4648 Uncharacterized conser 98.7 6.9E-08 1.5E-12 79.8 7.6 95 152-247 100-194 (536)
187 KOG4234 TPR repeat-containing 98.7 3.7E-07 8E-12 69.8 11.0 103 124-226 104-211 (271)
188 PF13424 TPR_12: Tetratricopep 98.7 5.7E-08 1.2E-12 65.1 5.5 68 255-322 2-76 (78)
189 PF13424 TPR_12: Tetratricopep 98.7 3.8E-08 8.2E-13 65.9 4.7 65 148-212 4-75 (78)
190 COG1729 Uncharacterized protei 98.7 1.2E-06 2.6E-11 71.0 14.0 104 186-327 144-250 (262)
191 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.9E-07 4.2E-12 81.1 9.8 70 253-322 70-142 (453)
192 KOG4234 TPR repeat-containing 98.6 6E-07 1.3E-11 68.7 11.1 110 186-331 98-207 (271)
193 PF06552 TOM20_plant: Plant sp 98.6 4.4E-07 9.5E-12 68.6 10.3 105 199-334 7-122 (186)
194 KOG1941 Acetylcholine receptor 98.6 3.2E-06 7E-11 70.7 15.5 190 130-320 137-359 (518)
195 COG4785 NlpI Lipoprotein NlpI, 98.6 3.8E-05 8.2E-10 59.9 20.2 166 148-328 64-232 (297)
196 PF06552 TOM20_plant: Plant sp 98.6 1E-06 2.2E-11 66.7 10.9 94 131-224 7-121 (186)
197 KOG1070 rRNA processing protei 98.6 1.3E-05 2.9E-10 77.7 20.2 176 135-319 1517-1698(1710)
198 KOG2610 Uncharacterized conser 98.5 6E-06 1.3E-10 68.4 14.8 152 126-285 114-274 (491)
199 PF05843 Suf: Suppressor of fo 98.5 6.9E-06 1.5E-10 69.4 15.9 133 151-291 3-140 (280)
200 KOG4555 TPR repeat-containing 98.5 9.1E-06 2E-10 57.8 13.6 84 130-213 58-145 (175)
201 KOG4555 TPR repeat-containing 98.5 2.9E-06 6.3E-11 60.3 10.8 97 152-249 46-146 (175)
202 PF05843 Suf: Suppressor of fo 98.5 1.7E-05 3.6E-10 67.1 17.3 103 130-232 16-122 (280)
203 KOG1585 Protein required for f 98.5 6.2E-05 1.4E-09 59.8 18.6 206 110-317 25-252 (308)
204 KOG2047 mRNA splicing factor [ 98.4 0.00029 6.3E-09 63.6 24.1 129 186-322 480-616 (835)
205 KOG2047 mRNA splicing factor [ 98.4 6.3E-05 1.4E-09 67.7 19.6 170 143-322 343-541 (835)
206 KOG1585 Protein required for f 98.4 0.00014 3.1E-09 57.8 18.9 172 150-322 32-220 (308)
207 PF13428 TPR_14: Tetratricopep 98.4 1.6E-06 3.5E-11 50.5 5.5 40 185-224 3-42 (44)
208 COG3118 Thioredoxin domain-con 98.4 0.00012 2.5E-09 60.2 18.0 237 62-311 45-291 (304)
209 PF13428 TPR_14: Tetratricopep 98.3 1.6E-06 3.5E-11 50.5 5.3 42 259-300 2-43 (44)
210 PF08424 NRDE-2: NRDE-2, neces 98.3 0.00021 4.5E-09 61.7 20.4 154 135-288 5-184 (321)
211 COG3898 Uncharacterized membra 98.3 0.00066 1.4E-08 57.8 22.0 114 199-324 245-361 (531)
212 KOG2796 Uncharacterized conser 98.3 0.00016 3.4E-09 58.3 17.2 133 151-291 179-319 (366)
213 COG3898 Uncharacterized membra 98.3 0.00068 1.5E-08 57.8 21.8 205 112-329 117-332 (531)
214 PF04184 ST7: ST7 protein; In 98.3 0.00011 2.3E-09 64.6 17.6 161 125-295 178-383 (539)
215 KOG1586 Protein required for f 98.3 0.00018 4E-09 56.8 17.1 150 161-326 26-188 (288)
216 PF13281 DUF4071: Domain of un 98.3 0.00055 1.2E-08 59.2 21.4 180 148-327 140-340 (374)
217 PF04184 ST7: ST7 protein; In 98.3 0.00013 2.7E-09 64.2 17.5 167 154-340 173-342 (539)
218 KOG0545 Aryl-hydrocarbon recep 98.3 8E-05 1.7E-09 59.2 14.5 68 258-325 230-297 (329)
219 KOG0376 Serine-threonine phosp 98.2 2.6E-06 5.6E-11 74.0 6.4 103 125-227 14-116 (476)
220 KOG4642 Chaperone-dependent E3 98.2 8.6E-06 1.9E-10 64.3 8.5 83 130-212 25-107 (284)
221 PF13431 TPR_17: Tetratricopep 98.2 1.7E-06 3.7E-11 47.0 3.1 32 138-169 2-33 (34)
222 PF13431 TPR_17: Tetratricopep 98.2 1.9E-06 4E-11 46.9 3.1 34 280-313 1-34 (34)
223 KOG3617 WD40 and TPR repeat-co 98.2 5.7E-05 1.2E-09 69.9 14.0 143 155-319 832-994 (1416)
224 PF13281 DUF4071: Domain of un 98.2 0.00068 1.5E-08 58.6 19.6 165 126-291 151-338 (374)
225 COG2976 Uncharacterized protei 98.2 0.00049 1.1E-08 53.0 16.6 114 167-288 70-189 (207)
226 KOG4642 Chaperone-dependent E3 98.1 4.3E-05 9.3E-10 60.4 10.3 98 152-250 13-110 (284)
227 KOG2053 Mitochondrial inherita 98.1 0.00019 4.2E-09 67.0 15.5 135 160-303 20-156 (932)
228 PF10300 DUF3808: Protein of u 98.1 0.00032 6.9E-09 63.8 16.7 120 130-250 248-372 (468)
229 PF00515 TPR_1: Tetratricopept 98.1 8.8E-06 1.9E-10 44.4 4.3 32 293-324 2-33 (34)
230 PF07719 TPR_2: Tetratricopept 98.1 1.3E-05 2.8E-10 43.7 5.0 33 293-325 2-34 (34)
231 KOG2610 Uncharacterized conser 98.0 0.00053 1.1E-08 57.3 15.9 160 152-319 106-274 (491)
232 COG3118 Thioredoxin domain-con 98.0 0.00079 1.7E-08 55.4 15.3 118 124-250 143-261 (304)
233 PF07719 TPR_2: Tetratricopept 97.9 3.1E-05 6.8E-10 42.1 5.0 31 185-215 3-33 (34)
234 PF00515 TPR_1: Tetratricopept 97.9 2.5E-05 5.3E-10 42.6 4.6 31 151-181 3-33 (34)
235 PF10300 DUF3808: Protein of u 97.9 0.0013 2.9E-08 59.8 17.9 155 160-322 199-377 (468)
236 KOG3617 WD40 and TPR repeat-co 97.9 0.00045 9.8E-09 64.2 14.1 116 150-285 859-994 (1416)
237 KOG1914 mRNA cleavage and poly 97.9 0.0062 1.3E-07 54.3 20.3 180 134-321 264-464 (656)
238 PF03704 BTAD: Bacterial trans 97.8 0.00087 1.9E-08 50.7 13.3 113 189-320 12-124 (146)
239 KOG0376 Serine-threonine phosp 97.8 4.1E-05 9E-10 66.7 6.4 107 153-267 8-115 (476)
240 KOG0545 Aryl-hydrocarbon recep 97.8 0.00018 3.8E-09 57.3 9.2 96 124-219 187-300 (329)
241 KOG2471 TPR repeat-containing 97.8 0.00041 8.9E-09 60.7 12.1 152 153-305 210-382 (696)
242 KOG0530 Protein farnesyltransf 97.7 0.0063 1.4E-07 49.3 16.2 191 130-328 58-260 (318)
243 PF13181 TPR_8: Tetratricopept 97.7 9.6E-05 2.1E-09 40.2 4.2 32 293-324 2-33 (34)
244 KOG1464 COP9 signalosome, subu 97.7 0.0035 7.7E-08 50.9 14.5 124 163-286 41-173 (440)
245 PF04910 Tcf25: Transcriptiona 97.7 0.0052 1.1E-07 53.8 16.9 148 140-289 31-224 (360)
246 COG0790 FOG: TPR repeat, SEL1 97.7 0.029 6.2E-07 48.0 23.5 188 129-325 55-270 (292)
247 PF03704 BTAD: Bacterial trans 97.7 0.008 1.7E-07 45.5 16.0 65 185-250 64-128 (146)
248 KOG0551 Hsp90 co-chaperone CNS 97.6 0.0037 8E-08 52.3 14.3 94 149-250 81-178 (390)
249 KOG1308 Hsp70-interacting prot 97.6 2.8E-05 6.1E-10 64.8 1.5 94 122-215 121-214 (377)
250 KOG0530 Protein farnesyltransf 97.5 0.007 1.5E-07 49.0 14.1 185 129-338 40-233 (318)
251 KOG1914 mRNA cleavage and poly 97.5 0.035 7.6E-07 49.8 19.0 185 131-323 309-503 (656)
252 PF13181 TPR_8: Tetratricopept 97.5 0.00028 6.1E-09 38.3 4.2 30 185-214 3-32 (34)
253 KOG3783 Uncharacterized conser 97.5 0.078 1.7E-06 47.7 21.3 194 130-325 248-524 (546)
254 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0022 4.8E-08 53.6 10.6 101 185-322 83-183 (390)
255 KOG1550 Extracellular protein 97.4 0.046 1E-06 51.2 20.7 177 131-321 228-426 (552)
256 PF08424 NRDE-2: NRDE-2, neces 97.4 0.025 5.3E-07 49.0 17.7 146 170-322 6-184 (321)
257 COG2909 MalT ATP-dependent tra 97.4 0.074 1.6E-06 50.7 21.5 200 122-324 422-650 (894)
258 KOG1464 COP9 signalosome, subu 97.4 0.054 1.2E-06 44.3 18.0 192 130-322 42-261 (440)
259 KOG4507 Uncharacterized conser 97.4 0.016 3.4E-07 52.4 15.7 74 261-334 645-718 (886)
260 PF13174 TPR_6: Tetratricopept 97.3 0.00048 1E-08 37.0 4.1 31 294-324 2-32 (33)
261 PF09613 HrpB1_HrpK: Bacterial 97.3 0.029 6.3E-07 42.3 14.6 82 151-232 12-93 (160)
262 KOG1258 mRNA processing protei 97.3 0.088 1.9E-06 47.9 20.0 176 129-306 311-489 (577)
263 PRK10941 hypothetical protein; 97.3 0.004 8.8E-08 51.9 11.1 70 259-328 182-251 (269)
264 PF14561 TPR_20: Tetratricopep 97.3 0.0049 1.1E-07 42.0 9.6 66 135-200 8-75 (90)
265 KOG2471 TPR repeat-containing 97.3 0.0047 1E-07 54.4 11.6 140 189-336 212-379 (696)
266 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0016 3.4E-08 39.2 6.2 39 293-331 2-40 (53)
267 PF13174 TPR_6: Tetratricopept 97.3 0.00061 1.3E-08 36.5 4.2 30 186-215 3-32 (33)
268 COG2976 Uncharacterized protei 97.3 0.056 1.2E-06 42.0 20.4 166 135-325 11-192 (207)
269 PRK10941 hypothetical protein; 97.2 0.0067 1.5E-07 50.6 11.3 76 151-226 183-258 (269)
270 KOG2396 HAT (Half-A-TPR) repea 97.2 0.046 1E-06 48.6 16.3 95 132-226 88-183 (568)
271 PF13176 TPR_7: Tetratricopept 97.2 0.00088 1.9E-08 36.8 4.0 26 295-320 2-27 (36)
272 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.057 1.2E-06 47.4 16.5 181 132-323 285-497 (660)
273 PF02259 FAT: FAT domain; Int 97.1 0.047 1E-06 48.0 16.7 168 147-324 144-341 (352)
274 PF09986 DUF2225: Uncharacteri 97.1 0.0076 1.6E-07 48.6 10.3 68 256-323 116-196 (214)
275 PF13176 TPR_7: Tetratricopept 97.1 0.0011 2.4E-08 36.4 3.9 24 152-175 2-25 (36)
276 KOG1308 Hsp70-interacting prot 97.1 0.0005 1.1E-08 57.6 3.3 77 156-232 121-197 (377)
277 PF08631 SPO22: Meiosis protei 97.0 0.16 3.5E-06 43.0 20.6 156 160-321 4-186 (278)
278 PF04910 Tcf25: Transcriptiona 97.0 0.1 2.3E-06 45.8 17.5 141 176-324 33-225 (360)
279 KOG2300 Uncharacterized conser 97.0 0.23 4.9E-06 44.3 21.6 189 130-323 290-516 (629)
280 KOG1258 mRNA processing protei 97.0 0.28 6E-06 44.9 20.3 191 130-328 270-477 (577)
281 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0059 1.3E-07 36.7 6.3 36 151-186 3-38 (53)
282 COG2909 MalT ATP-dependent tra 96.9 0.26 5.5E-06 47.2 19.7 191 126-317 469-684 (894)
283 KOG2300 Uncharacterized conser 96.9 0.27 5.9E-06 43.8 18.7 179 127-316 335-551 (629)
284 KOG3364 Membrane protein invol 96.9 0.043 9.3E-07 39.8 11.2 81 255-335 29-114 (149)
285 PF10602 RPN7: 26S proteasome 96.9 0.022 4.7E-07 44.5 10.8 62 150-211 37-101 (177)
286 TIGR02561 HrpB1_HrpK type III 96.9 0.11 2.3E-06 38.7 13.4 78 155-232 16-93 (153)
287 KOG3616 Selective LIM binding 96.8 0.024 5.3E-07 52.7 12.2 146 154-316 666-848 (1636)
288 KOG3616 Selective LIM binding 96.8 0.027 5.8E-07 52.4 12.4 169 126-318 671-876 (1636)
289 KOG0985 Vesicle coat protein c 96.8 0.14 3E-06 49.7 17.3 61 147-212 1102-1162(1666)
290 PF14561 TPR_20: Tetratricopep 96.8 0.016 3.6E-07 39.4 8.6 65 168-232 7-73 (90)
291 PF09613 HrpB1_HrpK: Bacterial 96.8 0.018 3.9E-07 43.4 9.5 85 129-214 24-108 (160)
292 COG4649 Uncharacterized protei 96.8 0.15 3.3E-06 38.9 16.9 120 159-286 68-195 (221)
293 PF04781 DUF627: Protein of un 96.8 0.024 5.2E-07 39.7 9.2 87 156-250 3-103 (111)
294 KOG4507 Uncharacterized conser 96.8 0.011 2.4E-07 53.4 9.4 100 129-228 621-721 (886)
295 KOG2422 Uncharacterized conser 96.8 0.27 5.8E-06 44.7 17.6 158 130-289 253-450 (665)
296 KOG2396 HAT (Half-A-TPR) repea 96.7 0.035 7.6E-07 49.3 12.0 81 252-332 99-180 (568)
297 PRK15180 Vi polysaccharide bio 96.7 0.1 2.2E-06 46.4 14.6 164 75-250 253-416 (831)
298 COG1747 Uncharacterized N-term 96.7 0.4 8.7E-06 43.1 21.6 187 126-325 76-292 (711)
299 smart00028 TPR Tetratricopepti 96.7 0.0033 7.2E-08 33.0 4.0 32 293-324 2-33 (34)
300 PF10345 Cohesin_load: Cohesin 96.7 0.62 1.3E-05 44.4 21.3 185 132-318 38-251 (608)
301 COG5159 RPN6 26S proteasome re 96.6 0.28 6.1E-06 40.6 15.5 166 155-320 9-193 (421)
302 COG4976 Predicted methyltransf 96.6 0.0043 9.2E-08 49.2 5.0 63 266-328 3-65 (287)
303 PF04190 DUF410: Protein of un 96.6 0.35 7.6E-06 40.5 18.9 106 216-321 48-170 (260)
304 KOG1550 Extracellular protein 96.6 0.16 3.5E-06 47.6 16.2 151 164-322 227-394 (552)
305 PF09986 DUF2225: Uncharacteri 96.6 0.093 2E-06 42.4 12.7 104 159-290 87-197 (214)
306 COG0790 FOG: TPR repeat, SEL1 96.6 0.42 9.1E-06 40.8 20.5 133 130-272 92-236 (292)
307 KOG3824 Huntingtin interacting 96.5 0.013 2.9E-07 48.6 7.5 65 126-190 127-191 (472)
308 PF10602 RPN7: 26S proteasome 96.5 0.15 3.2E-06 39.9 13.1 82 241-322 19-103 (177)
309 KOG2041 WD40 repeat protein [G 96.5 0.24 5.3E-06 46.1 15.8 158 143-317 687-877 (1189)
310 PF12968 DUF3856: Domain of Un 96.5 0.13 2.8E-06 36.4 11.0 66 220-286 58-128 (144)
311 PF12968 DUF3856: Domain of Un 96.4 0.13 2.8E-06 36.5 10.8 64 258-321 55-129 (144)
312 KOG3824 Huntingtin interacting 96.4 0.013 2.9E-07 48.6 7.0 60 268-327 126-185 (472)
313 PRK15180 Vi polysaccharide bio 96.4 0.026 5.5E-07 49.9 9.0 125 193-325 299-424 (831)
314 PF10345 Cohesin_load: Cohesin 96.4 0.89 1.9E-05 43.4 20.2 154 165-320 37-207 (608)
315 PF08631 SPO22: Meiosis protei 96.3 0.54 1.2E-05 39.9 16.7 131 193-323 3-152 (278)
316 smart00028 TPR Tetratricopepti 96.3 0.0072 1.6E-07 31.6 3.7 29 152-180 4-32 (34)
317 KOG0890 Protein kinase of the 96.3 0.64 1.4E-05 49.4 19.5 192 129-322 1463-1732(2382)
318 TIGR02561 HrpB1_HrpK type III 96.2 0.045 9.7E-07 40.6 8.2 72 129-200 24-95 (153)
319 KOG1839 Uncharacterized protei 96.2 0.088 1.9E-06 52.3 12.1 169 152-321 935-1128(1236)
320 KOG0985 Vesicle coat protein c 96.2 0.27 5.9E-06 47.8 14.8 136 162-319 1088-1247(1666)
321 PF04781 DUF627: Protein of un 96.2 0.16 3.4E-06 35.7 10.2 103 189-321 2-107 (111)
322 KOG3364 Membrane protein invol 96.1 0.3 6.6E-06 35.6 11.6 78 216-298 31-111 (149)
323 COG5191 Uncharacterized conser 96.1 0.016 3.6E-07 48.1 5.9 88 137-224 95-183 (435)
324 COG4976 Predicted methyltransf 96.1 0.013 2.7E-07 46.6 4.9 53 130-182 10-62 (287)
325 PF04053 Coatomer_WDAD: Coatom 95.9 0.37 8E-06 43.6 14.3 131 151-317 297-427 (443)
326 PF07079 DUF1347: Protein of u 95.9 1.2 2.5E-05 39.7 19.7 124 190-317 386-520 (549)
327 PF13374 TPR_10: Tetratricopep 95.8 0.026 5.6E-07 31.9 4.5 30 293-322 3-32 (42)
328 COG3629 DnrI DNA-binding trans 95.8 0.13 2.8E-06 43.0 10.1 64 258-321 153-216 (280)
329 KOG1839 Uncharacterized protei 95.8 0.23 5E-06 49.5 13.0 152 135-287 958-1128(1236)
330 KOG2581 26S proteasome regulat 95.7 0.83 1.8E-05 39.9 14.3 126 158-291 135-280 (493)
331 PF07079 DUF1347: Protein of u 95.7 1.3 2.7E-05 39.5 15.6 56 190-254 469-524 (549)
332 KOG1463 26S proteasome regulat 95.6 0.96 2.1E-05 38.6 14.3 172 153-324 132-319 (411)
333 PF02259 FAT: FAT domain; Int 95.6 1.4 3.1E-05 38.6 18.0 67 254-320 142-212 (352)
334 PF13374 TPR_10: Tetratricopep 95.6 0.035 7.6E-07 31.3 4.5 28 151-178 4-31 (42)
335 COG5107 RNA14 Pre-mRNA 3'-end 95.6 1.6 3.5E-05 38.8 16.2 154 137-291 30-194 (660)
336 KOG2581 26S proteasome regulat 95.5 0.57 1.2E-05 40.8 12.8 131 193-325 136-280 (493)
337 PF12862 Apc5: Anaphase-promot 95.5 0.093 2E-06 36.1 7.0 57 269-325 9-74 (94)
338 KOG2041 WD40 repeat protein [G 95.5 1.1 2.4E-05 42.0 15.4 24 151-174 798-821 (1189)
339 COG3629 DnrI DNA-binding trans 95.4 0.13 2.9E-06 42.9 8.8 64 149-212 153-216 (280)
340 COG5191 Uncharacterized conser 95.4 0.073 1.6E-06 44.5 7.0 80 251-330 100-180 (435)
341 PF11207 DUF2989: Protein of u 95.4 0.2 4.4E-06 39.4 9.1 70 242-312 123-198 (203)
342 PRK13184 pknD serine/threonine 95.3 0.39 8.4E-06 47.5 12.9 132 191-325 483-624 (932)
343 COG4649 Uncharacterized protei 95.2 1 2.2E-05 34.6 14.6 120 193-320 68-195 (221)
344 COG4455 ImpE Protein of avirul 95.2 0.21 4.6E-06 39.6 8.7 71 267-337 10-80 (273)
345 PF11817 Foie-gras_1: Foie gra 95.2 0.37 8E-06 40.0 10.8 85 234-318 154-244 (247)
346 KOG4814 Uncharacterized conser 95.1 2.8 6E-05 39.1 16.5 82 241-322 370-458 (872)
347 COG2912 Uncharacterized conser 95.1 0.24 5.1E-06 40.9 9.0 71 152-222 184-254 (269)
348 COG1747 Uncharacterized N-term 95.0 2.6 5.6E-05 38.2 19.7 184 146-335 63-248 (711)
349 KOG1310 WD40 repeat protein [G 95.0 0.089 1.9E-06 47.2 7.0 92 195-291 386-478 (758)
350 COG2912 Uncharacterized conser 95.0 0.26 5.7E-06 40.7 9.2 68 260-327 183-250 (269)
351 PF12862 Apc5: Anaphase-promot 94.8 0.3 6.4E-06 33.6 8.0 55 159-213 8-71 (94)
352 COG3914 Spy Predicted O-linked 94.8 2.9 6.4E-05 38.5 15.8 32 265-296 149-180 (620)
353 PF07720 TPR_3: Tetratricopept 94.7 0.15 3.2E-06 27.8 4.9 32 293-324 2-35 (36)
354 PF04053 Coatomer_WDAD: Coatom 94.7 0.63 1.4E-05 42.2 11.6 136 156-323 268-404 (443)
355 KOG1463 26S proteasome regulat 94.6 2.6 5.6E-05 36.1 15.5 135 186-320 51-196 (411)
356 KOG4814 Uncharacterized conser 94.6 0.41 8.9E-06 44.2 10.0 79 154-232 359-443 (872)
357 KOG2114 Vacuolar assembly/sort 94.5 1.1 2.3E-05 43.0 12.7 96 130-232 349-446 (933)
358 KOG3807 Predicted membrane pro 94.3 3 6.5E-05 35.6 17.4 149 155-321 190-340 (556)
359 KOG1538 Uncharacterized conser 94.3 2 4.4E-05 40.0 13.7 50 266-318 781-830 (1081)
360 KOG2422 Uncharacterized conser 94.2 4.5 9.8E-05 37.3 17.3 154 162-324 251-451 (665)
361 PF07721 TPR_4: Tetratricopept 94.0 0.1 2.2E-06 26.0 3.1 21 295-315 4-24 (26)
362 COG3947 Response regulator con 94.0 2.1 4.5E-05 35.9 12.0 61 260-320 281-341 (361)
363 KOG1310 WD40 repeat protein [G 94.0 0.28 6E-06 44.2 7.6 88 130-217 389-479 (758)
364 PF10579 Rapsyn_N: Rapsyn N-te 93.9 0.91 2E-05 29.7 7.9 53 156-208 13-68 (80)
365 PF07720 TPR_3: Tetratricopept 93.8 0.29 6.3E-06 26.7 4.8 20 152-171 4-23 (36)
366 KOG0128 RNA-binding protein SA 93.8 6.7 0.00015 37.8 16.4 185 137-321 300-526 (881)
367 PF07721 TPR_4: Tetratricopept 93.8 0.096 2.1E-06 26.1 2.7 21 152-172 4-24 (26)
368 PF13041 PPR_2: PPR repeat fam 93.6 0.61 1.3E-05 27.5 6.6 29 150-178 4-32 (50)
369 PF13041 PPR_2: PPR repeat fam 93.6 0.49 1.1E-05 27.9 6.2 46 182-227 2-48 (50)
370 COG3914 Spy Predicted O-linked 93.4 3.7 8.1E-05 37.8 13.7 95 134-228 50-147 (620)
371 COG5159 RPN6 26S proteasome re 93.4 4.1 8.8E-05 34.1 17.8 194 128-322 16-236 (421)
372 PRK13184 pknD serine/threonine 93.4 9.5 0.00021 38.2 18.6 90 129-219 489-588 (932)
373 PF11207 DUF2989: Protein of u 93.4 1 2.2E-05 35.6 9.0 73 159-232 116-193 (203)
374 PF09670 Cas_Cas02710: CRISPR- 93.3 5.1 0.00011 35.7 14.6 60 153-212 135-198 (379)
375 KOG0546 HSP90 co-chaperone CPR 93.3 0.22 4.8E-06 42.4 5.6 126 188-335 227-352 (372)
376 PF12854 PPR_1: PPR repeat 93.2 0.21 4.6E-06 26.8 3.6 28 148-175 6-33 (34)
377 PF08311 Mad3_BUB1_I: Mad3/BUB 93.2 2.5 5.4E-05 30.9 11.2 80 234-319 42-126 (126)
378 PF15015 NYD-SP12_N: Spermatog 93.1 0.92 2E-05 39.8 9.1 59 261-319 231-289 (569)
379 KOG2758 Translation initiation 93.0 5.1 0.00011 34.1 17.9 184 135-328 115-324 (432)
380 PF10516 SHNi-TPR: SHNi-TPR; 92.8 0.31 6.6E-06 27.0 4.0 30 293-322 2-31 (38)
381 PF00244 14-3-3: 14-3-3 protei 92.8 4.7 0.0001 33.2 14.3 167 152-320 4-197 (236)
382 PF12854 PPR_1: PPR repeat 92.7 0.31 6.8E-06 26.1 3.9 27 291-317 6-32 (34)
383 smart00299 CLH Clathrin heavy 92.7 3.2 6.9E-05 30.8 13.1 47 160-207 18-64 (140)
384 PF10516 SHNi-TPR: SHNi-TPR; 92.3 0.29 6.2E-06 27.1 3.4 27 151-177 3-29 (38)
385 KOG0529 Protein geranylgeranyl 92.0 8.2 0.00018 34.1 15.3 168 130-301 44-238 (421)
386 TIGR03504 FimV_Cterm FimV C-te 91.5 0.51 1.1E-05 27.1 4.0 23 263-285 4-26 (44)
387 COG3947 Response regulator con 91.5 1.2 2.6E-05 37.2 7.6 116 130-250 226-345 (361)
388 KOG0687 26S proteasome regulat 91.4 8.5 0.00018 32.9 14.8 103 182-288 103-211 (393)
389 smart00386 HAT HAT (Half-A-TPR 91.3 0.64 1.4E-05 24.1 4.2 30 272-301 1-30 (33)
390 TIGR03504 FimV_Cterm FimV C-te 91.0 0.54 1.2E-05 27.0 3.7 27 295-321 2-28 (44)
391 PF10373 EST1_DNA_bind: Est1 D 90.8 1.4 3E-05 37.3 7.9 62 134-195 1-62 (278)
392 PF01535 PPR: PPR repeat; Int 90.7 0.47 1E-05 24.3 3.3 26 152-177 3-28 (31)
393 smart00386 HAT HAT (Half-A-TPR 90.5 1 2.2E-05 23.2 4.6 27 198-224 2-28 (33)
394 PF09205 DUF1955: Domain of un 90.5 5.5 0.00012 29.2 11.6 56 267-322 95-150 (161)
395 PF15015 NYD-SP12_N: Spermatog 90.2 7.3 0.00016 34.5 11.3 52 154-205 233-284 (569)
396 PF04090 RNA_pol_I_TF: RNA pol 90.0 8.4 0.00018 30.6 12.8 66 149-214 41-107 (199)
397 PF10255 Paf67: RNA polymerase 89.9 2.4 5.2E-05 37.7 8.6 97 220-324 125-231 (404)
398 KOG3807 Predicted membrane pro 89.5 13 0.00028 32.0 17.8 51 126-178 195-245 (556)
399 PF01535 PPR: PPR repeat; Int 89.4 0.72 1.6E-05 23.6 3.3 25 295-319 3-27 (31)
400 COG3014 Uncharacterized protei 89.2 14 0.0003 31.9 15.7 35 291-325 212-246 (449)
401 PF10579 Rapsyn_N: Rapsyn N-te 88.9 4.3 9.3E-05 26.6 7.0 54 268-321 16-72 (80)
402 KOG1920 IkappaB kinase complex 88.7 6.4 0.00014 39.6 11.1 49 262-317 1003-1051(1265)
403 COG5187 RPN7 26S proteasome re 88.7 9.9 0.00021 32.0 10.6 84 240-323 97-186 (412)
404 KOG4279 Serine/threonine prote 88.7 7.2 0.00016 37.3 10.8 105 126-232 211-335 (1226)
405 TIGR00756 PPR pentatricopeptid 88.6 1.2 2.6E-05 23.3 4.0 26 152-177 3-28 (35)
406 PF11846 DUF3366: Domain of un 88.4 2.2 4.7E-05 33.9 6.8 50 274-324 127-176 (193)
407 KOG0276 Vesicle coat complex C 88.3 9 0.0002 35.7 11.0 71 132-211 624-694 (794)
408 PF10373 EST1_DNA_bind: Est1 D 88.2 2.3 4.9E-05 35.9 7.3 62 168-229 1-62 (278)
409 KOG0529 Protein geranylgeranyl 88.1 9.9 0.00021 33.6 10.8 99 130-228 90-194 (421)
410 TIGR00756 PPR pentatricopeptid 87.4 1.6 3.4E-05 22.9 3.9 28 294-321 2-29 (35)
411 PF14863 Alkyl_sulf_dimr: Alky 87.3 5 0.00011 29.9 7.6 50 148-197 69-118 (141)
412 PF10255 Paf67: RNA polymerase 87.2 5.6 0.00012 35.5 9.1 29 291-319 163-191 (404)
413 COG4455 ImpE Protein of avirul 87.1 14 0.00031 29.8 12.5 59 158-216 10-68 (273)
414 PF13812 PPR_3: Pentatricopept 86.6 2.2 4.7E-05 22.3 4.2 27 151-177 3-29 (34)
415 PF09670 Cas_Cas02710: CRISPR- 85.9 23 0.00049 31.7 12.3 44 186-229 134-179 (379)
416 KOG0687 26S proteasome regulat 85.6 22 0.00048 30.5 11.4 82 240-321 86-173 (393)
417 PF00244 14-3-3: 14-3-3 protei 85.5 19 0.00041 29.7 14.8 158 129-287 15-198 (236)
418 KOG1538 Uncharacterized conser 85.5 25 0.00054 33.3 12.2 190 111-324 583-805 (1081)
419 smart00299 CLH Clathrin heavy 85.3 13 0.00028 27.5 13.5 41 191-231 15-55 (140)
420 KOG0890 Protein kinase of the 84.3 73 0.0016 35.3 18.7 65 147-213 1668-1732(2382)
421 PF13812 PPR_3: Pentatricopept 84.3 3.4 7.4E-05 21.5 4.3 27 294-320 3-29 (34)
422 PF09797 NatB_MDM20: N-acetylt 84.3 6.6 0.00014 34.8 8.4 109 133-249 201-310 (365)
423 KOG4014 Uncharacterized conser 83.5 14 0.0003 28.9 8.4 102 214-324 31-144 (248)
424 COG5116 RPN2 26S proteasome re 83.4 22 0.00047 33.1 10.9 26 151-176 61-86 (926)
425 smart00101 14_3_3 14-3-3 homol 82.8 26 0.00056 29.0 16.5 167 152-320 4-199 (244)
426 KOG2062 26S proteasome regulat 82.0 51 0.0011 31.9 14.2 42 134-175 42-85 (929)
427 PF12739 TRAPPC-Trs85: ER-Golg 82.0 40 0.00086 30.6 15.5 32 151-182 210-241 (414)
428 cd02680 MIT_calpain7_2 MIT: do 81.7 3.7 7.9E-05 26.8 4.2 17 161-177 18-34 (75)
429 KOG4014 Uncharacterized conser 81.4 24 0.00051 27.7 14.4 53 267-321 177-233 (248)
430 COG4941 Predicted RNA polymera 81.3 35 0.00076 29.5 17.6 183 132-325 213-398 (415)
431 smart00777 Mad3_BUB1_I Mad3/BU 81.2 19 0.0004 26.3 9.0 75 237-317 45-124 (125)
432 PF11817 Foie-gras_1: Foie gra 81.2 19 0.00042 29.9 9.5 65 220-285 181-245 (247)
433 KOG2066 Vacuolar assembly/sort 80.5 46 0.001 32.3 12.2 26 259-284 506-531 (846)
434 KOG0686 COP9 signalosome, subu 80.3 43 0.00092 29.9 13.9 97 218-318 151-255 (466)
435 KOG0686 COP9 signalosome, subu 80.1 43 0.00094 29.8 11.4 98 185-285 152-256 (466)
436 COG4941 Predicted RNA polymera 79.9 40 0.00086 29.2 14.7 139 165-320 212-357 (415)
437 KOG4279 Serine/threonine prote 79.8 8.2 0.00018 36.9 7.2 128 216-351 200-346 (1226)
438 PF02184 HAT: HAT (Half-A-TPR) 79.3 6 0.00013 20.8 3.7 26 273-299 2-27 (32)
439 PHA02537 M terminase endonucle 79.2 28 0.00062 28.4 9.4 22 193-214 93-114 (230)
440 PF12739 TRAPPC-Trs85: ER-Golg 78.9 51 0.0011 29.9 14.9 103 185-287 210-329 (414)
441 PF14863 Alkyl_sulf_dimr: Alky 78.7 9.7 0.00021 28.4 6.2 46 262-307 74-119 (141)
442 KOG1920 IkappaB kinase complex 77.1 62 0.0014 33.1 12.4 17 192-208 961-977 (1265)
443 cd02682 MIT_AAA_Arch MIT: doma 77.0 14 0.00029 24.2 5.7 18 159-176 16-33 (75)
444 KOG0276 Vesicle coat complex C 76.5 68 0.0015 30.3 11.7 101 130-256 652-752 (794)
445 COG5187 RPN7 26S proteasome re 75.9 48 0.001 28.1 14.6 100 184-287 116-221 (412)
446 KOG0546 HSP90 co-chaperone CPR 75.6 4.1 8.9E-05 35.1 3.8 102 126-227 233-353 (372)
447 KOG4521 Nuclear pore complex, 75.6 1E+02 0.0022 31.7 16.1 168 148-323 919-1134(1480)
448 PF04840 Vps16_C: Vps16, C-ter 75.6 47 0.001 28.9 10.4 98 193-314 187-284 (319)
449 PF11846 DUF3366: Domain of un 75.4 14 0.00029 29.3 6.7 49 165-214 127-175 (193)
450 PF04212 MIT: MIT (microtubule 75.4 12 0.00025 23.9 5.2 20 267-286 14-33 (69)
451 COG5536 BET4 Protein prenyltra 75.3 49 0.0011 27.9 10.7 183 132-318 49-257 (328)
452 TIGR02710 CRISPR-associated pr 75.2 60 0.0013 28.9 13.4 54 155-208 136-196 (380)
453 KOG0128 RNA-binding protein SA 75.1 88 0.0019 30.7 21.6 157 131-288 95-261 (881)
454 KOG2063 Vacuolar assembly/sort 74.4 99 0.0021 31.0 13.8 161 152-320 507-712 (877)
455 KOG2114 Vacuolar assembly/sort 74.4 81 0.0018 31.0 12.1 60 152-212 337-397 (933)
456 PF09205 DUF1955: Domain of un 71.2 39 0.00085 25.0 8.8 55 158-212 95-149 (161)
457 PHA02537 M terminase endonucle 71.2 9 0.00019 31.3 4.7 27 158-184 92-118 (230)
458 PRK11619 lytic murein transgly 70.3 1.1E+02 0.0024 29.7 22.4 78 243-320 297-374 (644)
459 cd00280 TRFH Telomeric Repeat 70.2 51 0.0011 25.9 10.8 46 263-309 116-161 (200)
460 PF08626 TRAPPC9-Trs120: Trans 70.2 1.4E+02 0.0031 31.5 14.0 86 236-321 356-474 (1185)
461 PF08311 Mad3_BUB1_I: Mad3/BUB 69.9 40 0.00087 24.6 14.9 40 246-285 87-126 (126)
462 PRK15490 Vi polysaccharide bio 69.0 71 0.0015 30.2 10.4 76 130-207 23-98 (578)
463 PF14689 SPOB_a: Sensor_kinase 68.9 18 0.0004 22.5 4.8 23 263-285 28-50 (62)
464 PF07163 Pex26: Pex26 protein; 68.4 73 0.0016 27.0 11.8 111 129-248 49-181 (309)
465 cd00280 TRFH Telomeric Repeat 67.9 58 0.0013 25.6 9.0 40 155-195 117-156 (200)
466 PRK15490 Vi polysaccharide bio 67.6 34 0.00073 32.3 8.1 44 129-174 56-99 (578)
467 PF04762 IKI3: IKI3 family; I 67.5 75 0.0016 32.4 11.1 131 166-318 795-927 (928)
468 KOG2561 Adaptor protein NUB1, 67.4 50 0.0011 29.7 8.6 26 261-286 270-295 (568)
469 cd02679 MIT_spastin MIT: domai 66.8 20 0.00043 23.7 4.8 19 268-286 18-36 (79)
470 PF12753 Nro1: Nuclear pore co 66.7 22 0.00047 31.5 6.3 46 274-321 334-391 (404)
471 KOG4521 Nuclear pore complex, 66.6 1.6E+02 0.0036 30.4 15.0 111 182-313 919-1042(1480)
472 KOG2066 Vacuolar assembly/sort 66.2 1.4E+02 0.003 29.3 13.0 51 126-176 367-419 (846)
473 PF13226 DUF4034: Domain of un 64.8 52 0.0011 27.8 8.1 29 133-161 61-89 (277)
474 COG4259 Uncharacterized protei 64.7 44 0.00096 23.1 7.0 42 291-332 71-112 (121)
475 cd02684 MIT_2 MIT: domain cont 64.7 16 0.00035 23.8 4.1 16 161-176 18-33 (75)
476 KOG3677 RNA polymerase I-assoc 63.7 1E+02 0.0022 27.7 9.6 23 262-284 276-298 (525)
477 KOG3024 Uncharacterized conser 62.5 96 0.0021 26.3 13.0 49 235-283 103-152 (312)
478 cd02677 MIT_SNX15 MIT: domain 62.4 13 0.00029 24.2 3.4 15 197-211 20-34 (75)
479 COG5536 BET4 Protein prenyltra 62.1 98 0.0021 26.2 8.9 151 131-283 90-256 (328)
480 PF14689 SPOB_a: Sensor_kinase 61.4 23 0.0005 22.0 4.2 31 291-321 22-52 (62)
481 PF12921 ATP13: Mitochondrial 61.1 62 0.0013 23.6 8.6 76 150-225 3-96 (126)
482 PRK11619 lytic murein transgly 61.1 1.7E+02 0.0036 28.5 21.5 55 262-318 411-465 (644)
483 cd02682 MIT_AAA_Arch MIT: doma 60.9 44 0.00095 21.8 6.5 17 234-250 22-38 (75)
484 PF07219 HemY_N: HemY protein 60.8 48 0.001 23.3 6.3 43 265-307 66-108 (108)
485 KOG1497 COP9 signalosome, subu 60.2 1.1E+02 0.0025 26.4 13.0 118 149-269 103-230 (399)
486 PF10858 DUF2659: Protein of u 60.0 77 0.0017 24.4 12.5 69 163-231 71-143 (220)
487 PF13226 DUF4034: Domain of un 59.8 1.1E+02 0.0024 26.0 12.2 135 156-309 7-150 (277)
488 PF05053 Menin: Menin; InterP 59.4 1.6E+02 0.0034 27.7 12.4 80 147-226 275-367 (618)
489 KOG2062 26S proteasome regulat 59.3 1.8E+02 0.0039 28.4 13.5 125 188-325 506-638 (929)
490 smart00777 Mad3_BUB1_I Mad3/BU 59.3 67 0.0015 23.4 11.9 76 198-283 41-124 (125)
491 PF05053 Menin: Menin; InterP 58.8 1.2E+02 0.0026 28.4 9.7 94 154-263 262-363 (618)
492 PF04212 MIT: MIT (microtubule 58.4 25 0.00054 22.3 4.2 22 190-211 12-33 (69)
493 smart00745 MIT Microtubule Int 57.6 38 0.00083 21.9 5.1 18 269-286 19-36 (77)
494 TIGR03362 VI_chp_7 type VI sec 57.4 1.3E+02 0.0027 26.0 16.3 57 265-321 220-279 (301)
495 smart00671 SEL1 Sel1-like repe 57.3 27 0.00058 18.2 3.8 13 164-176 20-32 (36)
496 PF07219 HemY_N: HemY protein 57.2 66 0.0014 22.7 7.0 47 152-198 62-108 (108)
497 PF12921 ATP13: Mitochondrial 57.1 74 0.0016 23.2 10.5 67 259-325 3-85 (126)
498 PF10952 DUF2753: Protein of u 55.4 68 0.0015 23.3 6.0 61 152-212 4-79 (140)
499 cd02681 MIT_calpain7_1 MIT: do 53.7 31 0.00067 22.6 4.0 20 192-211 15-34 (76)
500 KOG2561 Adaptor protein NUB1, 53.6 1.8E+02 0.0038 26.5 11.4 130 152-282 166-339 (568)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=5.3e-26 Score=196.94 Aligned_cols=210 Identities=19% Similarity=0.131 Sum_probs=116.7
Q ss_pred ccccccccccchhhhhhhhhhhcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSARED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
++...|.+.-++..++-. +.. ++...|+..|+++++.+|+..++|+++|.+|...+.+++|+..|.+++.+.|+..
T Consensus 210 Ai~~qp~fAiawsnLg~~---f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCV---FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchH---HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 444555555555555443 222 3666667777777777776666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.++-++|.+|+.+|..+-|+..|++++++.|+.++++.+++.++...|+ ..++...|.+|+.+ .+...+...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l------~p~hadam~N 359 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRL------CPNHADAMNN 359 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHh------CCccHHHHHH
Confidence 6666666666666666666666666666666666666666666655555 33333333333333 3444444455
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
||.+|.++|++++|...|+++++..|+-..+..++|.+|.++|++++|+.+|++++.+.|.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 5555555555555555555555554444444445555555555555555555555544443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2.4e-24 Score=186.78 Aligned_cols=219 Identities=18% Similarity=0.155 Sum_probs=151.9
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
++..+|.+..+...+... |... .+++|+.+|.+++...|++..++-++|.+|+.+|+.+-|+..|+++++++|+.+
T Consensus 244 AvkldP~f~dAYiNLGnV---~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNV---YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred hhcCCCcchHHHhhHHHH---HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 567777777777777766 5544 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH-------------------------
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE------------------------- 238 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~------------------------- 238 (355)
+++.++|..+...|+..+|..+|.+++.+.|+++++.+++|.+|..+|. ++.|.
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 7777777766667777777777777777777777776677776666665 33332
Q ss_pred --HHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 239 --KRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 239 --~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
+.+++|+..+++ +...|.-.+.+.++|..|..+|+.+.|+++|.+++..+|...+++.++|.+|...|+..+|+..|
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 225555555555 45566667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCChh
Q 040440 316 EKFRRLVPRNHP 327 (355)
Q Consensus 316 ~~~l~~~p~~~~ 327 (355)
++++++.|+.++
T Consensus 480 ~~aLklkPDfpd 491 (966)
T KOG4626|consen 480 RTALKLKPDFPD 491 (966)
T ss_pred HHHHccCCCCch
Confidence 777777776543
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.4e-21 Score=181.91 Aligned_cols=188 Identities=19% Similarity=0.191 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
+|++|++.|+++++. .|....++..+|.++...|++++|+..|+++++.+|+....|..+|.++...|++++|+..|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 789999999999986 47788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++.+|+++.+++.+|.++...|+ +++|+..+++ +...|++...+..+|.++...|++++|+..|++++
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 7777777766 55678888999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...|+++.++..+|.++..+|++++|+..|++++.+.|++
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999875
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.3e-21 Score=181.01 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=175.9
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
.+...|.....+..++.. ....+++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..
T Consensus 357 al~l~P~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASM--NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHHcCCCcHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 344556655555555554 123449999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ +++|...+++|+++.............+...
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 4555555555554422211111111122233
Q ss_pred H-HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 265 A-QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 265 a-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+ .++...|++++|+..+++++..+|++..++..+|.++...|++++|+.+|++++++.+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 3 334457999999999999999999999999999999999999999999999999998764
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=5.6e-22 Score=173.81 Aligned_cols=198 Identities=22% Similarity=0.247 Sum_probs=179.7
Q ss_pred ccCCHHHHHHHHHHHH----------------------------------HcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHL----------------------------------AANPNDIEALQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l----------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 172 (355)
+..+|++|+++|+.+- ..+|+.++.|..+|.+|..+++++.|+++|
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f 444 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCF 444 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHH
Confidence 3348999999888863 337888999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h
Q 040440 173 DRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E 251 (355)
Q Consensus 173 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~ 251 (355)
+++++++|....+|-.+|.-+....++|.|..+|++++..+|.+-.+|+++|.+|.++++ ++.|.-.|++ .
T Consensus 445 ~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAV 516 (638)
T ss_pred HHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999 5555555555 4
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
..+|.+..+...+|.++.++|+.|+|+.+|++++.++|.++...+..|.++..++++++|+..+++..++.|++......
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 55899999999999999999999999999999999999999999999999999999999999999999999988554433
Q ss_pred H
Q 040440 332 F 332 (355)
Q Consensus 332 ~ 332 (355)
+
T Consensus 597 l 597 (638)
T KOG1126|consen 597 L 597 (638)
T ss_pred H
Confidence 3
No 6
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.3e-22 Score=173.48 Aligned_cols=209 Identities=16% Similarity=0.104 Sum_probs=194.3
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
..++....+|-.+++- |..+ +.+.|+++|+++++.+|+...+|..+|.-+....++|.|..+|++++..+|.+..+
T Consensus 415 ~~~~~sPesWca~GNc---fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNC---FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred hhCCCCcHHHHHhcch---hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 3455666667666665 6666 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+ .++|++++++ ...++.++...+..
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--------~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--------KDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--------hhHHHHHHHHHHhcCCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999998 7777777777 56689999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
|.+++..+++++|+..++++.+.-|++..+++.+|.+|.++|+.+.|+..|.-+.+++|...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999863
No 7
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.3e-20 Score=172.28 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS---------QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 200 (355)
++++|+..|+++++.+|++..++..+|.+|... +++++|+..++++++++|++..++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 678999999999999999999999999987744 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
+|+..|+++++++|++..+++.+|.++...|+ +++|+..+++ ...+|.+......++.+++..|++++|+.
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 99999999999999999999999999999999 7777777777 55577777666667777888999999999
Q ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 280 VYEELVKEE-PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 280 ~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+++++... |+++..+..+|.++...|++++|...+++.....|.+...
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 999999875 7788899999999999999999999999988887765433
No 8
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-20 Score=156.48 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=177.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH---HHHH-------------------------------HHHHHHHHccCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI---EALQ-------------------------------TLMEVRIKSQKLVEAVDV 171 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~---~~~~-------------------------------~la~~~~~~g~~~~A~~~ 171 (355)
|...|+++|+..|+++.+.+|-.. +.+. .+|+.|...++.++|+.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 555599999999999999988532 2211 135556677899999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 172 IDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 172 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
|+++++++|....+|..+|.-|..+.+...|++.|+++++++|.+-.+|+++|+.|..++- ..-++-++++|.++
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-h~YaLyYfqkA~~~---- 427 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-HFYALYYFQKALEL---- 427 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc-hHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999999999998887 33344445555444
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV--PRNHPYR 329 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 329 (355)
.|.+..+|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++.. -....-.
T Consensus 428 --kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 428 --KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred --CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 899999999999999999999999999999999988888999999999999999999999999999843 1111111
Q ss_pred HHHHHHHHHHHHhccHHhhhh
Q 040440 330 EYFVDNMVATKIFGEKVDRES 350 (355)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~ 350 (355)
.....+.++..++..++..++
T Consensus 506 t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHH
Confidence 222344455555555554443
No 9
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.8e-19 Score=169.05 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=168.2
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
+...|....++..++.. ....+++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..+
T Consensus 69 l~~~p~~~~~l~~l~~~--~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 69 VLTAKNGRDLLRRWVIS--PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHhCCCchhHHHHHhhh--HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455555555555533 1334599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH---------------------------
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE--------------------------- 238 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~--------------------------- 238 (355)
+..++.++...|++++|+..+++++...|++...+..++. +...|+ +++|.
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~-~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR-LPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999888888888777655433 444444 22221
Q ss_pred -HHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 040440 239 -KRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSE----ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 239 -~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
+.+++|+..+++ ....|++..++..+|.+|...|++++ |+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 224455555555 44566777777788888888888875 788888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHH
Q 040440 313 KQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 313 ~~~~~~l~~~p~~~~~~~~ 331 (355)
.++++++.++|++......
T Consensus 305 ~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 8888888888877554433
No 10
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=5.7e-19 Score=145.77 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..+|.++...|++++|++.++++
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 210 LRKD--PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 210 ~~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+... +.....+..++.++...|+ +++|+..+.+ ....+.....+..+|.++...|++++|+..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGD--------FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 3344556666666666666 4444444444 233444555666666666666666666666666666
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..|.+...+..++.++...|+.++|..+.+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 198 TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 65555666666666666666666666666555444
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=2.8e-19 Score=171.91 Aligned_cols=208 Identities=9% Similarity=0.017 Sum_probs=183.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..+++++...|.+ ..+..+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35569999999999988775554 55788999999999999999999999999998887777777777788999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++.+|+ ...+..++.++.+.|+ +++|+..+++ ....|++..++..+|.++...|++++|+..|+++
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~--------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHN--------VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999996 8999999999999999 7777777777 5668999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFG 343 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 343 (355)
++.+|+++.+++++|.++..+|++++|+.+|+++++++|++.........+.....+|.
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988666555555554444443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=4.8e-19 Score=166.25 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=171.5
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
.+...|....++..++.. ....+++++|+..++++++.+|++..++..++.++...|++++|+..+++++...|++..
T Consensus 102 ~l~~~P~~~~a~~~la~~--l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASV--LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred HHHhCCCChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 344556666666655554 233348999999999999999999998888898888888888888888888777766655
Q ss_pred HHH----------------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 185 WQL----------------------------------LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 185 ~~~----------------------------------~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+. .++.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 180 a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 180 MIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 432 2345666778888888888888888888888888899999888
Q ss_pred CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 231 DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
|+ ++++ ..+|+..+++ ....|++..++..+|.++...|++++|+..+++++..+|++..++..+|.++...|+++
T Consensus 260 G~-~~eA---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 260 GR-SREA---KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CC-chhh---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 88 2210 0125555555 44578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChh
Q 040440 310 EAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~ 327 (355)
+|+..|++++...|++..
T Consensus 336 eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 336 AASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHHHHhCccchH
Confidence 999999999999997643
No 13
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.5e-20 Score=156.26 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=188.5
Q ss_pred ccccccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 040440 101 AIAAPVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE 179 (355)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 179 (355)
.+...+..++.+.+..+.++.. |.+. +-++-...|.++...+|+++++|+..|++++-.+++++|+.-|++++.++
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~---y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAA---YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHH---HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444566777777767777666 7766 89999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH
Q 040440 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259 (355)
Q Consensus 180 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~ 259 (355)
|++...+..++.+.+++++++++...|+++.+..|+.++++...+.++..+++ ++.|.+.|++|+++-.......-...
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccch
Confidence 99999999999999999999999999999999999999999999999999988 78888888888877544222222233
Q ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 260 FKLLIAQIKV-MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 260 ~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+..-|.+.. -.+++.+|+..++++++.+|....++..||.+..++|+.++|+++|+++..+....
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 3333333222 34899999999999999999999999999999999999999999999999886543
No 14
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=5.5e-19 Score=136.28 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
++..+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHHHHHHHHh---hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 231 DKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
|+ +++|...|++ ....+.....+.++|.|..+.|+.+.|..+|+++++.+|+.+.....++..+++.|+
T Consensus 117 g~--------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 117 GR--------PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CC--------hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 65 4444444444 122334445566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCC
Q 040440 308 KDEAEKQFEKFRRLVP 323 (355)
Q Consensus 308 ~~~A~~~~~~~l~~~p 323 (355)
+-.|..++++.....+
T Consensus 189 y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 189 YAPARLYLERYQQRGG 204 (250)
T ss_pred chHHHHHHHHHHhccc
Confidence 6666666666555443
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.85 E-value=4.7e-19 Score=176.91 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=166.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH--------------HHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE--------------WQLLKAQ 191 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~la~ 191 (355)
...+++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++.. ....+|.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999887642 1234577
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH-----------
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF----------- 260 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~----------- 260 (355)
++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|...|+++++. .|.+...
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRM------DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999998 55555545444432 2332222
Q ss_pred -------------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 261 -------------------------------KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 261 -------------------------------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
+..+|.++...|++++|++.|+++++.+|+++++++.+|.+|...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 2345666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhH
Q 040440 310 EAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+..++++++..|++...
T Consensus 513 ~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHH
Confidence 9999999999999988554
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=4.3e-19 Score=149.51 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+-++|+.+|+++++.+|....+|..+|.-|..+.+...|++.|+++++++|.+-.+|+.+|+.|..++-..=|+-+|+++
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE- 287 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 287 (355)
.+..|++...|..+|.||.+.++ .++|++.+++ .........++..+|.+|.+.+++++|..+|++.++.
T Consensus 425 ~~~kPnDsRlw~aLG~CY~kl~~--------~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 425 LELKPNDSRLWVALGECYEKLNR--------LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HhcCCCchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 7777777777 3333446778999999999999999999999999983
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 288 ------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 288 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
.++-..+...|+.-+.+.+++++|..+...++.-++.-...+.++..+
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344456777799999999999999999999988866555555555444
No 17
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=8.6e-19 Score=151.11 Aligned_cols=208 Identities=20% Similarity=0.111 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.+|.++|-++...+|....+|...|..+...|+.++|+..|..+-++-|....-.+.+|.-|...++++-|.++|.++
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888788888999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+.+.|.++-+...+|.+.+..+. +.+|..++..++...+. ....+.....+.++|.+|.+++.+++|+.+|++++.+.
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999988877 78888888888877666 33344577789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
|.+..++..+|.+|..+|+.+.|+++|.+++.+.|++......+...+..
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997776666655554
No 18
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.84 E-value=1.3e-18 Score=147.97 Aligned_cols=188 Identities=19% Similarity=0.100 Sum_probs=145.5
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|.. +++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHH--HHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEA--LRVY 281 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~ 281 (355)
.|+++++.+|+++.....+ .+....++ +++|++.+.+ ....+.. .+. .+.++...|++.++ ++.+
T Consensus 154 ~~~~al~~~P~~~~~~~~~-~l~~~~~~--------~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 154 DLLAFYQDDPNDPYRALWL-YLAESKLD--------PKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred HHHHHHHhCCCCHHHHHHH-HHHHccCC--------HHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHH
Confidence 9999999999987432222 22334555 6666666654 2111111 111 34455556665443 3222
Q ss_pred HH----HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 282 EE----LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 282 ~~----~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+ ..+..|...++|+.+|.++...|++++|+.+|+++++.+|.+
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 22 234556677899999999999999999999999999999754
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.7e-18 Score=154.52 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=143.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A 202 (355)
..+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..+|.+|...|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33588888888888888888888888888888888888888888888887653322 24577788888888888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCc-----hHHHHHHHHHHHHHccCHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSD-----LRDFKLLIAQIKVMESKHSE 276 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~-----~~~~~~~la~~~~~~g~~~~ 276 (355)
+..|+++++..|.+..++..++.++...|+ +++|++.++.. ...+. ...++..+|.++...|++++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKD--------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888888888888888888887 55555555551 11221 12345567777777788888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|+.+|+++++.+|++..+++.+|.++...|++++|+++|++++..+|.+
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 8888888877777777777777788877888888888888777776654
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.8e-18 Score=154.39 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=171.5
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHcCCH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-----WQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~ 199 (355)
|.. +++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.. .+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 444 49999999999999999999999999999999999999999999999998776532 466789999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCch-HHHHHHHHHHHHHccCHHHH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDL-RDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~-~~~~~~la~~~~~~g~~~~A 277 (355)
++|+..|+++++.+|++...+..++.++...|+ +++|++.+++. ...+.. ...+..++.+|...|++++|
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGD--------YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999 77777777772 223333 45678899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
+..++++++..|+.. .+..++.++.+.|++++|...++++++..|++..+..++
T Consensus 269 ~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 269 LEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999664 458999999999999999999999999999875554333
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.84 E-value=3.5e-18 Score=141.03 Aligned_cols=173 Identities=15% Similarity=0.136 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+..++++++.+|++...+..+|.++...|++++|++.++++++..|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE---KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
...|+ +++|++.+++. ...+.....+..+|.++...|++++|...+++++..+|++...+..+|.++..
T Consensus 110 ~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 110 CQQGK--------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHccc--------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 99998 66666666652 12345567788899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhH
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.|++++|..++++++...|.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999997765433
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.84 E-value=6.2e-18 Score=130.52 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=177.0
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|-. +++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++.+|++++|..
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence 444 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILRK--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.|++++.. .+.....+.++|.|..+.|+ ++.|.+.+++ +..+++.......++...++.|+|-.|..++
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--------~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQ--------FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCC--------chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999984 45667889999999999999 6666666655 5558888999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++.....+-....+.....+....|+-+.+..+=.+.....|....+..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 9998877777777777788999999999999998889999998766643
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=2.5e-18 Score=171.72 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=150.6
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------------------
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEV----------------------------- 158 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------- 158 (355)
.|....++..++.. +... ++++|++.|+++++.+|++..++..++.+
T Consensus 381 ~P~~~~a~~~Lg~~---~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DNTDSYAVLGLGDV---AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444444444 4333 77777777777777777766655444333
Q ss_pred -------------HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 159 -------------RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 159 -------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+..++++++..|+++..++.++.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3345777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHhccCchHHHHHHH-------------------------------------HHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKR-------------------------------------IEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~-------------------------------------~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
.+...++ .+++... +++|+.+++ ..|.+...+..+|.++
T Consensus 538 ~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 538 YLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHH
Confidence 5555544 2222221 222333332 3566677788899999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
...|++++|+..|+++++.+|++..++..++.++...|++++|++.++++++..|++...
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 999999999999999999999999999999999999999999999999999888877554
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=3e-18 Score=168.78 Aligned_cols=191 Identities=17% Similarity=0.286 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..|+++++.+|++..++..++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|.+...+..++.++...|+ +++|+..+++ ....+.+...+..+|.++...|++++|+..|+++++..
T Consensus 560 ~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 560 AELNPQEIEPALALAQYYLGKGQ--------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHhCccchhHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666666 6667777666 44567777888888999988999999999999988888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.+...+..+|.++...|++++|..+|+++++..|++...
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 8888888889999988999999999999988888876443
No 25
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=4.9e-19 Score=153.19 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=174.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+.+++.+|.-.|+.+++.+|++.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhC-----------------------------------------C--CCHHHHHHHHHHHhccCchHHHHHHHHH
Q 040440 206 FEEILRKD-----------------------------------------P--LRVEAYHGLVMAYDGSDKKLNEVEKRIE 242 (355)
Q Consensus 206 ~~~~~~~~-----------------------------------------p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 242 (355)
+.+.+... | .++++...||.+|...++ |+
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------fd 447 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------FD 447 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------HH
Confidence 88876542 2 345666778888888777 99
Q ss_pred HHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 243 KAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 243 ~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+|+++|+. +...|.+..+|..||-.+....+.++|+..|++++++.|..+.++++||..|+.+|.|+||.++|-.++.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 78899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 322 VPR 324 (355)
Q Consensus 322 ~p~ 324 (355)
.++
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 765
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=2.5e-18 Score=158.82 Aligned_cols=182 Identities=15% Similarity=0.078 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-cc-CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++++|.+...++.++.++...|+ +++|+..+++. .. .+.....+..+|.+|...|++++|+..++++...
T Consensus 399 l~l~P~~~~~~~~~~~~~~~~g~--------~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLDPTRAAAGITKLWITYYHTG--------IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcCCCChhhHHHHHHHHHhccC--------HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999998877777777777888 78888887773 22 4677888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|.+...+..++..|...|+ +|...+++.++.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99888899999999998884 777777776653
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=8.5e-18 Score=165.55 Aligned_cols=195 Identities=19% Similarity=0.246 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++..|.+...|..+|.++...|++++|+..|+++++.+|.+...+..+|.++...|++++|+..|+++
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHH---------------------------HHHHHHHHHHHHh-hccCCchHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEV---------------------------EKRIEKAMERCKK-EKKKSDLRDFK 261 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~~Al~~~~~-~~~~~~~~~~~ 261 (355)
++.+|++...+..++.++...|+ ++++ .+.+++|++.+++ ....+.. ..+
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 739 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNA 739 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHH
Confidence 77777777766666666666665 2111 1224444444444 2222222 444
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
..++.++...|++++|++.++++++.+|++..+++.+|.++...|++++|+..|+++++..|++.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 55556666666666666666666666666666666666666666666666666666666666553
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.4e-18 Score=145.92 Aligned_cols=199 Identities=17% Similarity=0.232 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.+++-+|.+.++.+|+.+|.+...|..++.+|...++-++-...|+++..++|+++++|+..|++++-+++|++|+..|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+++.++|++.-.+..++.+.++.++ +.++...|++ ....|..++++...|.++..++++++|++.|+.+++
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999988 7777777776 566899999999999999999999999999999999
Q ss_pred hCCC------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 287 EEPR------DFRPYLCQGIIYT-LLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 287 ~~~~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
+.|. ++..+...|.+.. -.+++.+|+.+++++++++|........+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 9998 5555655554443 3489999999999999999987554433333
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.80 E-value=1.3e-17 Score=160.64 Aligned_cols=192 Identities=10% Similarity=0.005 Sum_probs=178.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++...+..++......|++++|+..|+++++.+|+ ...+..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34459999999999999999999888888777777889999999999999999996 88999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|++++..+|++..++..+|.++...|+ +++|++.+++ ....|++..++..+|.++...|++++|+..|+++
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~--------~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGD--------IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 6777777766 5568999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
++.+|++..+....|.+.....+++.|.+.+++....+|+..
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999988753
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=1.4e-18 Score=147.53 Aligned_cols=187 Identities=23% Similarity=0.224 Sum_probs=108.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+...++++|++++++..+..+ ++..+...+.++...|+++++...++++.... +.+...|..+|.++.+.|+.++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445588889988888887664 46667777888888999999999998877654 566778888899999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
..|+++++.+|++..+...++.++...|+ ++++.+.++. ....+.++.++..+|.+|...|++++|+.+|+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGD--------YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 99999999999999998889988888888 6666666655 22235666677888999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++++.+|+|+..+..+|.++...|+.++|..+.++++..
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999888887653
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=4.6e-17 Score=147.54 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=102.7
Q ss_pred hhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 119 TKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
+...+..+.++++++|.+++.+++..+|.+..+|+.+|.+|-+.|+.++++..+-.+..++|.+.+.|..++....++|+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444456778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+++|+-+|.++++.+|.+....+..+.+|.+.|+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999998888888888888874
No 32
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.79 E-value=8e-17 Score=133.29 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=142.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHc---
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI---EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYA--- 196 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~--- 196 (355)
+..+++++|+..+++++..+|++. .+++.+|.++...|++++|+..++++++..|++.. +++.+|.++...
T Consensus 44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 445699999999999999998875 57899999999999999999999999999887765 688889988876
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc
Q 040440 197 -----GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 197 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~ 271 (355)
|++++|++.|++++..+|++...+..+..+.... .. .......+|.+|...
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~------------~~------------~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR------------NR------------LAGKELYVARFYLKR 179 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH------------HH------------HHHHHHHHHHHHHHc
Confidence 7899999999999999999876654333221110 00 011234678999999
Q ss_pred cCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 272 SKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
|++++|+..|++++...|+. ..+++.+|.++...|++++|..+++......|
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999997764 57999999999999999999999998877665
No 33
>PLN02789 farnesyltranstransferase
Probab=99.78 E-value=1.4e-16 Score=135.40 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH--HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES--EAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~ 206 (355)
..++|+..+.++++.+|++..+|...+.++...| ++++++..++++++.+|++..+|..++.++...|+. ++++.++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 7789999999999999999999999999999998 689999999999999999999999999999988874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc---cCH----HHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---SKH----SEAL 278 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---g~~----~~A~ 278 (355)
+++++.+|++..+|...+.++...|+ ++++++.+.+ +..++.+..+|...+.+.... |.+ ++++
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~--------~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGG--------WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 99999999999999999999999988 7777777777 566889999999999888765 333 5789
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
.+..+++..+|++..+|+.++.++.. .++..+|...+.+++...|+......++.++..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999988 456678999999999888887666555555554
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.77 E-value=6.7e-18 Score=143.37 Aligned_cols=200 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++++|+..|++++..++.++..+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...|+++++...+++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 389999999999999999988888888888 799999999999999987664 456677778889999999999999999
Q ss_pred HHhhC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 209 ILRKD--PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 209 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+.... +.+...|..+|.++.+.|+ .++|++.+++ +...|++..+...++.++...|+++++.+.++...
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 87655 6788899999999999999 6666666666 55689999999999999999999999999999998
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+..|.++..|..+|.++..+|++++|+.+|+++++.+|+|+.....+..++..
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 88888999999999999999999999999999999999997776555555443
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=2.1e-16 Score=151.48 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=172.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~ 200 (355)
+..+++++|+..|+++++..+.. ..+...+|.+|...|++++|+.+|+++++.+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 55569999999999999876432 2244446999999999999999999999888765 346777888889999999
Q ss_pred HHHHHHHHHHhhCCC---------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 201 AAIKGFEEILRKDPL---------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
+|+..++++....|. ...++..++.++...|+ +++|++.+++ ....|.+..++..+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~--------~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND--------LPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998763 23467788999999999 8888888877 56689999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
|.++...|++++|++.+++++..+|++..+++.+|.++...|++++|+..++++++..|++.....+-
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997664443
No 36
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.76 E-value=2e-17 Score=133.83 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=173.9
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|.+. +...|+..+.+.++..|.++..+..++.++-.++++++|+++|+.+++.+|.+.++...+|.-|+..++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 7777 889999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+|++.+++.-.+++.+.++|.|+...++ ++-++..++.|+... .......++|+++|.+....|++.-|.++|+-+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9999999999999999999999988887 444444444444432 335566789999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..++++.++++++|.+..+.|+.++|..++..+....|+-
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999999999999999999999999999999999998874
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=6.9e-16 Score=130.29 Aligned_cols=202 Identities=14% Similarity=0.078 Sum_probs=178.7
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.|..+++++|.+.|++++..+....++++++|..+-..|+.++|+++|-++..+--++.++++.++.+|..+.+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 46677999999999999999999999999999999999999999999999988878899999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
++-++..+.|+++.++..++.+|-+.|+ -.+|.++.-. -.-.|.+.+..-++|..|+...-+++|+.+|++
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegd--------ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGD--------KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccc--------hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999998 5555554433 455788888888999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
+--+.|+.......++.|+.+.|+|++|.+.|+..-...|.+.+...++.+
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 988888777777778899999999999999999999989988665554443
No 38
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=3e-16 Score=136.11 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=153.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred hHHHHHH----------------------------------HHHHHHHHHHh-hccCC--chHHHHHHHHHHHHHccCHH
Q 040440 233 KLNEVEK----------------------------------RIEKAMERCKK-EKKKS--DLRDFKLLIAQIKVMESKHS 275 (355)
Q Consensus 233 ~~~~a~~----------------------------------~~~~Al~~~~~-~~~~~--~~~~~~~~la~~~~~~g~~~ 275 (355)
. ..|.. .+....++|-+ ....+ .++++...||.+|...|+|+
T Consensus 369 q-~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 Q-NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred H-HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 3 22222 22222333333 23333 78889999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+.+|+.++...|+|...|+.||-.+..-.+.++|+..|++++++.|.....
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 99999999999999999999999999999999999999999999999987444
No 39
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.73 E-value=2.8e-15 Score=122.35 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=173.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
..++++.+|+..|..+++.+|++..+++..|.+|..+|+-..|+.-+.+++++.|+...+....|.++.++|++++|...
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHH------------HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRV---EAYHGLV------------MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~---~~~~~l~------------~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+.++..+|.+. +++..++ ..+...|+ +..+++.... +...+++..++...+.+|.
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD--------~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD--------CQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 999999998543 2322222 22334455 7788888777 6778999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
..|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 999999999999999999999999999999999999999999999999999999873
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=2.4e-15 Score=128.02 Aligned_cols=177 Identities=15% Similarity=0.063 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANP---N-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
..+.++..+.+++...+ . ....|+.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56778999999997444 3 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++++|++..++..+|.++...|+ +++|++.+++ ....|.+... .....+....+++++|+..+++.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGR--------YELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999999999999999999999 7777777766 4446665532 22223445678999999999887
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...+.+. |. .+.++...|+..++ ..++.+.
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHH
Confidence 75543332 22 45666667777554 3444444
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=3.4e-15 Score=132.62 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=150.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEAL-QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+...++++.|.+.++++.+.+|++.... ...+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 3666699999999999999888875433 345889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC------------------------------------------CHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 204 KGFEEILRKDPL------------------------------------------RVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 204 ~~~~~~~~~~p~------------------------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
+.+.++.+.... ++.....++..+...|+ .
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--------~ 279 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--------H 279 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--------H
Confidence 777776654332 33334444555555555 6
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++|.+.+++.-..+.+..+....+.+ ..++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++.
T Consensus 280 ~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 280 DTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777733344455444444443 4488999999999999999999999999999999999999999999999999
Q ss_pred CCCChh
Q 040440 322 VPRNHP 327 (355)
Q Consensus 322 ~p~~~~ 327 (355)
.|++..
T Consensus 358 ~P~~~~ 363 (398)
T PRK10747 358 RPDAYD 363 (398)
T ss_pred CCCHHH
Confidence 998644
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=4.4e-15 Score=142.46 Aligned_cols=205 Identities=12% Similarity=0.105 Sum_probs=162.2
Q ss_pred hhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 040440 116 NESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194 (355)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 194 (355)
+..++.. +... ++++|++.++++++.+|.+..++..++.++...|++++|+..++++++.+|++.. +..+|.++.
T Consensus 52 ~~~lA~~---~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVA---YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 4444443 4444 9999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHH-----------------------------------
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK----------------------------------- 239 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~----------------------------------- 239 (355)
..|++++|+..++++++..|++..++..++.++...+. .+.|+.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~-~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL-SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 99999999999999999999999999999998876655 332221
Q ss_pred -HH---HHHHHHHHhh----ccCCchH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcC
Q 040440 240 -RI---EKAMERCKKE----KKKSDLR----DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF-RPYLCQGIIYTLLR 306 (355)
Q Consensus 240 -~~---~~Al~~~~~~----~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~~~~g 306 (355)
.+ ++|++.++.. ...|... .++......+...|++++|+..|+++++..+..+ .+...+|.+|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 12 5566666552 1223221 1222212234677999999999999998864322 24444699999999
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 040440 307 KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~ 325 (355)
++++|+.+|+++++.+|.+
T Consensus 287 ~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 287 QPEKAQSILTELFYHPETI 305 (765)
T ss_pred CcHHHHHHHHHHhhcCCCC
Confidence 9999999999999888765
No 43
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.1e-15 Score=139.78 Aligned_cols=196 Identities=15% Similarity=0.151 Sum_probs=134.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---CHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG---ESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~ 201 (355)
|.+++|-.|+.+|+.++..+|. -++....+|.+++++|+.+.|+..|+++++++|.+..++..||.+-.... .+..
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 5555666666666665555554 23444555555566666666666666666666655555555554433332 3445
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE----KKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
+...+.++...++.++.+...++..++..|+ |..+..+.... ...+.....++.+|+.|..+|+|++|
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d--------y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKD--------YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhccc--------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 5555555555566666666666666666555 66666655551 22234455689999999999999999
Q ss_pred HHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 278 LRVYEELVKEEPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 278 ~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..+|.++++.++++ .-.++.+|.+|...|+++.|..+|+++++..|++....
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999988 77899999999999999999999999999999985553
No 44
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3e-15 Score=124.91 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++-..+....+..+.....-|+--+...+..+++..|+.+-+++|+.+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 45555555555555444444445555555555555555555555555555555555555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHH-----------------------------HHHHHHHHHHHh-hccCCchHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVE-----------------------------KRIEKAMERCKK-EKKKSDLRD 259 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~-----------------------------~~~~~Al~~~~~-~~~~~~~~~ 259 (355)
..+.|-..+.|.++..+|...|. ..+|. .--++|..++++ +...|....
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 55555555555555555555544 22220 113667777776 677899999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+...+|.+....|.+++++..+++.+...+ |...+..+|.++...+.+++|.++|..++.++|++....
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999999988 667889999999999999999999999999999984443
No 45
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.70 E-value=2.1e-15 Score=119.99 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=110.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-hccCchHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY-DGSDKKLNEVEKR 240 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~a~~~ 240 (355)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++...+..++.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-------- 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-------- 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------
Confidence 677788888888888888988888999999888999999999999999998888888887777754 33332
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
..+++|.+.++++++.+|++..+++.+|.++...|++++|+.+|+++++
T Consensus 124 -------------------------------~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 -------------------------------HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------------------------------CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2368899999999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHH
Q 040440 321 LVPRNHPYREYFV 333 (355)
Q Consensus 321 ~~p~~~~~~~~~~ 333 (355)
..|.+..-...+.
T Consensus 173 l~~~~~~r~~~i~ 185 (198)
T PRK10370 173 LNSPRVNRTQLVE 185 (198)
T ss_pred hCCCCccHHHHHH
Confidence 9887766555553
No 46
>PLN02789 farnesyltranstransferase
Probab=99.70 E-value=4.6e-15 Score=126.11 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=149.4
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
+...+++++|+..+.++++++|++..+|..++.++..+| ++++++..++++++.+|++..+|+..+.++...++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~--- 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA--- 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh---
Confidence 445678899999999999999999999999999999998 6899999999999999999999999998888777521
Q ss_pred HHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCH----H
Q 040440 238 EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL---RKK----D 309 (355)
Q Consensus 238 ~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---g~~----~ 309 (355)
++++++++++ +..++.+..+|...+.++...|++++|+++++++++.+|.+..+|+.++.+.... |.+ +
T Consensus 124 ---~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ---ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred ---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 2344555544 5568999999999999999999999999999999999999999999999998876 333 5
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 310 EAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+++.+..+++.++|+|.....++..++..
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 78889999999999997776666666543
No 47
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.3e-15 Score=114.94 Aligned_cols=126 Identities=15% Similarity=0.060 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56788888888764 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
+++.+++.+|.++. ..|++++|+..|+++++..|+++..
T Consensus 90 ~~~~a~~~lg~~l~-----------------------------------------~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 90 SHPEPVYQTGVCLK-----------------------------------------MMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCcHHHHHHHHHHH-----------------------------------------HcCCHHHHHHHHHHHHHhCCCChHH
Confidence 88777766666554 4456667777777777777777777
Q ss_pred HHHHHHHHHH
Q 040440 295 YLCQGIIYTL 304 (355)
Q Consensus 295 ~~~l~~~~~~ 304 (355)
+..++.+...
T Consensus 129 ~~~~~~~~~~ 138 (144)
T PRK15359 129 SEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 48
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=3.5e-15 Score=132.43 Aligned_cols=198 Identities=19% Similarity=0.137 Sum_probs=164.2
Q ss_pred hhhccC-CHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHH
Q 040440 124 SAREDV-SYEEKEKEIEQHLAA--------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQ 186 (355)
Q Consensus 124 ~~~~~~-~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~ 186 (355)
..|... +|++|+..++.+++. .|.-......+|.+|...+++++|+.+|++++.+ +|....++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 347666 999999999999987 4444455566999999999999999999999876 33444579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCc
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDP-----LR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSD 256 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~ 256 (355)
.+|+.+|...|++++|..++++++++.. .. ...+..++.++..+++ ++++..++.++++++.. ...++.
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhccccchH
Confidence 9999999999999999999999998732 22 3446678888888887 99999999999999886 344456
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
...++..+|.+|..+|++++|.+.|++++.+.. .....+..+|..|.+++++++|...|.++..+.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 788899999999999999999999999997642 234577899999999999999999999987753
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.9e-14 Score=116.55 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~ 204 (355)
+.++|+..|.++++.+|+..++...+|..|...|+.|.|+.+-+..++. |+.. .+...+|.-|...|-++.|.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7799999999999999999999999999999999999999998877654 4332 368889999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccC---CchHHHHHHHHHHHHHccCHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKK---SDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~---~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
.|....+...--..+...+..+|....+ +++||+..++ .... .....++..++..+....+.++|+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~tre--------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATRE--------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999988666667788889999988887 8888888876 2222 233455778888888889999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 99999999999999999999999999999999999999999988864
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=2e-14 Score=128.31 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=119.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..++++.|.+.+.++.+..|+....+...|.++...|+++.|..+++++.+..|+.. .+....+.++...|++++|+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4445666666666666666666666666666666666666666666666666666553 344445666666666666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-------------------------------HHHHHh-hc
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA-------------------------------MERCKK-EK 252 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A-------------------------------l~~~~~-~~ 252 (355)
.++++.+..|+++.++..++.++...|+ ++++...+++. .+.+.. ..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666666666666666666666665 33221111100 011111 11
Q ss_pred cCC----chHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------------------------hCCCCh
Q 040440 253 KKS----DLRDFKLLIAQIKVMESKHSEALRVYEELVK------------------------------------EEPRDF 292 (355)
Q Consensus 253 ~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------------------------~~~~~~ 292 (355)
..| ++..++..++..+...|++++|++.++++++ .+|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 122 3455566666666666666666666655554 445555
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChh
Q 040440 293 --RPYLCQGIIYTLLRKKDEAEKQFE--KFRRLVPRNHP 327 (355)
Q Consensus 293 --~~~~~l~~~~~~~g~~~~A~~~~~--~~l~~~p~~~~ 327 (355)
.....+|.++.+.|++++|.++|+ .+++..|++..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 556677888888888888888888 46667776544
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.69 E-value=1.6e-14 Score=128.26 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=157.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-------------------------- 179 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------- 179 (355)
...+++++|+..++++.+.+|+++.++..++.+|...|+|++|++.+.++.+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334599999999999999999999999999999999999999997777665432
Q ss_pred ----------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 040440 180 ----------------PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243 (355)
Q Consensus 180 ----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 243 (355)
|+++.+...++..+...|+.++|.+.++++++. +.++.....++.+ ..++ .++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~--------~~~ 312 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN--------PEQ 312 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC--------hHH
Confidence 234455667788999999999999999999994 5566554444444 3366 888
Q ss_pred HHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 244 AMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 244 Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++.+++ .+..|++...+..+|.++...|++++|.++|+++++..|++ ..+..++.++.+.|+.++|.++|++++.+.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888 78899999999999999999999999999999999999954 556789999999999999999999998764
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=2.4e-14 Score=116.95 Aligned_cols=213 Identities=18% Similarity=0.159 Sum_probs=175.1
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+.+..+|...+++....+++..|-++..+...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 44666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH---HHhccCchHHHH--HHHHHHHHHHHHh-hccCCchHHH----HHHHHHHHHHccC
Q 040440 204 KGFEEILRKDPLRVEAYHGLVM---AYDGSDKKLNEV--EKRIEKAMERCKK-EKKKSDLRDF----KLLIAQIKVMESK 273 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~---~~~~~~~~~~~a--~~~~~~Al~~~~~-~~~~~~~~~~----~~~la~~~~~~g~ 273 (355)
...+++++++|++...+-..-. +-..... .+.+ .+.|.++++..++ +...|....+ ...+..|+..-|+
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les-~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLES-AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 9999999999998765432111 1111000 1111 2446777777777 4555553333 4456788889999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
+.+|++.+.+++..+|++..++...+.+|.....|+.|+.-|+++.+.++++...+.-+...--
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999777665554433
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.67 E-value=4.3e-14 Score=129.55 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=135.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG----ESEAA 202 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A 202 (355)
.++|++|..+|.++++.++++ .-.++.+|++|+..|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 347788888888887777776 6667777788888888888888888887777777777777777777665 55677
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC----------------------------
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK---------------------------- 254 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~---------------------------- 254 (355)
..+..++++..|.+.++|..++.++....- +.. +..|..|+.++......
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 777777777777777777777777665533 221 33333333333331111
Q ss_pred ---------------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 255 ---------------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 255 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
.......+++|.++...++++.|.+.|..+++.+|...+++..+|......++..+|...++.++
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 11122355666666666666666666666666666666666666655556666666666666666
Q ss_pred HhCCCChhHHHHHHHHHHHHH
Q 040440 320 RLVPRNHPYREYFVDNMVATK 340 (355)
Q Consensus 320 ~~~p~~~~~~~~~~~~~~~~~ 340 (355)
..+..++..+.++....+...
T Consensus 558 ~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 558 NIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred hcccCCcHHHHHHHHHHHhhh
Confidence 666666666555554444443
No 54
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-14 Score=124.74 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=174.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-------WQLLKAQVQS 194 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~ 194 (355)
.+.+|...+++.|++.|..+++.+ .+...+.+.+.+|+..|.+.+.+...+++++....... ....+|..|.
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 345677779999999999999999 89999999999999999999999999998877554333 2334566788
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--------------------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPL--------------------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
..++++.|+.+|++++..... -..--..-|..++..|+ |.+|+..+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--------y~~Av~~Y 381 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--------YPEAVKHY 381 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--------HHHHHHHH
Confidence 889999999999998875422 11112344666666666 67777777
Q ss_pred Hh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 249 KK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 249 ~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.+ +..+|++..++.+.|.+|.++|++..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++.+|++..
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 66 56689999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 040440 328 YREYFVDNMVAT 339 (355)
Q Consensus 328 ~~~~~~~~~~~~ 339 (355)
+...+...+.+.
T Consensus 462 ~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 462 AIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.66 E-value=9.3e-14 Score=109.93 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=165.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|+|.+|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 35556777777888899999999 99999999999999999999999988999988888899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+....|++.++|..+|.+|.+.|+ .+.|...|.+|+++ .+..+.+..++|..|...|+++.|..++..+....
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALEL------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHh------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999 66666666666666 67888999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+.+..+..+++.+....|++++|...-.+-+
T Consensus 199 ~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 199 AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8899999999999999999999998765443
No 56
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=7.7e-14 Score=120.41 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=98.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
.+++.+||+.|+.+|.+++.++|.+...+.+...+|...|+|++|++--.+.+++.|.=+..|..+|..+.-+|+|++|+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
..|.+.++.+|++...+.+++.++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999998888888776
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=8.5e-15 Score=123.81 Aligned_cols=191 Identities=13% Similarity=0.101 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.+|..+.+.++..+.-++.++.+.|.+-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 88888888888888888888888899999999999999999999999988888899999999999999999999999998
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
-.+--++.++++.++.+|..+.+ ..+|++++-+ ....|.++.++..+|.+|-+.|+-.+|.+++-......
T Consensus 551 h~il~nn~evl~qianiye~led--------~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf 622 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLED--------PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF 622 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhC--------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 88888899999999999998888 8888888877 56678999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.+.+..-++|..|....-+++|+.+|+++--+.|+...+
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 9999999999999999999999999999999999976443
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2.5e-14 Score=123.95 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=132.5
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
..|..++|.+..++.+..++.+|-+..++-....++...|+..+-..+-.++++..|+.+..|+..|..|...|++.+|+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 34666688888888888887766655544433335555555555444445555555555555555555555555555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH---------------------------HHHHHHHHHHHh-hccCC
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE---------------------------KRIEKAMERCKK-EKKKS 255 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~---------------------------~~~~~Al~~~~~-~~~~~ 255 (355)
.+|.++..++|....+|..+|..+...++ .+.+. ..++-|-+++.. ....|
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~E-hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGE-HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcch-HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555544444 22221 114444444444 45578
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++.++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.++|.++.+.+.+++|+.++++++.+.|++...
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 8888999999999999999999999999884322 1 22358899999999999999999999999999998554
No 59
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=7.8e-14 Score=124.54 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------------------
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------------------ 178 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------------ 178 (355)
+++++|...++++++..|+++.++..++.++...|++++|++.+++..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 36666666666666666666666666666666666666655555544422
Q ss_pred --------CC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHhccCchHHHHHHHHHHH
Q 040440 179 --------EP----NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY--HGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 179 --------~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.| +++..+..++..+...|++++|++.++++++..|++.... ..........++ .+++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~--------~~~~ 318 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED--------NEKL 318 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC--------hHHH
Confidence 11 1223344445555556666666666666666665554321 111111122233 3445
Q ss_pred HHHHHh-hccCCchH--HHHHHHHHHHHHccCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 245 MERCKK-EKKKSDLR--DFKLLIAQIKVMESKHSEALRVYE--ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 245 l~~~~~-~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
++.+++ ....|+++ .+...+|+++++.|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.+++++++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555 55678888 888999999999999999999999 57778885544 6699999999999999999999987
Q ss_pred Hh
Q 040440 320 RL 321 (355)
Q Consensus 320 ~~ 321 (355)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 64
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=6.8e-14 Score=124.32 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=152.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-- 213 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 213 (355)
.+|.-..+...++..|...|+|++|+..++.+++. .+........+|.+|..++++++|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999987 44444455569999999999999999999999872
Q ss_pred ---CCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 214 ---PLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 214 ---p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++ ..++.+|+.+|...|+ +.+|..++++|++++++ ....+.....+..++.++..++++++|..++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 334 4568899999999999 99999999999999998 34556666778899999999999999999999998
Q ss_pred HhCC-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 286 KEEP-----R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 286 ~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++.. + -...+.+||.+|..+|++++|.+++++++.+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7532 2 25678999999999999999999999999875
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=118.04 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
-+.+|.+.++..++..| .++.+..++.+|.+..+...|+..+.+.++..|.+...+..++.++..++++++|.++|+.+
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 78899999999998765 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|.+.++.-.++.-|+-.++ .+-|+.++++ +.....+++++.++|.|....+++|-++..|++++...
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~--------PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNN--------PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HhcCCccceeeeeeeeccccCCC--------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 99999999998888888888888 7888888888 56677889999999999999999999999999999754
Q ss_pred C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 289 P---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 289 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
. .-.++|+++|.+....|++.-|..+|+-++.-++++.
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 3 3468999999999999999999999999999998873
No 62
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=6.7e-13 Score=104.25 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=162.6
Q ss_pred hccCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDVSYEEKEKEIEQHLAAN------PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 199 (355)
+...+.++-+++..+.+... ++.-..+.....+....|+.+.|..++++.....|+........|..+...|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 33347777788777776532 333445566677777899999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
++|+++|+..++-+|.+...+.....+...+|+ --+||+.+.+ ....+.+.++|..++.+|+..|+|++|.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 999999999999999999888888778888887 4566666666 6668889999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLR---KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~ 325 (355)
-++++++-..|.++..+..+|.+++-+| +++-|.++|.++++++|.+
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999999999999999999999988877 5678999999999999965
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.63 E-value=9.5e-14 Score=131.61 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=157.6
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..++++.|+..|+++++.+|++......++.++...|+.++|+.++++++...+........+|.++...|++++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 36677999999999999999999965555888899999999999999999993334444445555889999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
.|+++++.+|+++.++..++.++...++ .++|++.+++ ....+.... +..++.++...++..+|++.+++
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q--------~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGR--------GGVVLKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCC--------HHHHHHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999999999 8999999988 445555444 36667777677888789999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+++.+|++..++..+..++...|-...|.+..++.
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999999999999998776653
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.62 E-value=3.8e-14 Score=107.04 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=108.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
...|+++++.+|++ ++.+|.++...|+ +++|+..++. ....|.+..++..+|.++...|++++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46789999988875 5678999999999 8888888877 6778999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
++++..+|+++.+++++|.++..+|++++|+..|++++++.|+++.+.....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999876654433
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=5.3e-13 Score=117.71 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+|...|..++.++++.+|++.+.|.....+.....+++.|..+|.++....| ...+|+.-+.....+++.++|+.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 4666666677777777777667776666666667777777777776665544 334566667777788899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+++.+|+....|..+|+++.++++ .+.|.+.|.. .+..|....+|..++.+-.+.|+.-+|..+++++.-.
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~--------ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMEN--------IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHH--------HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999999999999999999999888 7777777776 6778889999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|++...|.....+..+.|+.+.|...+.++++-.|++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999988876
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.59 E-value=4.8e-13 Score=124.61 Aligned_cols=144 Identities=13% Similarity=-0.013 Sum_probs=77.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+.......|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 33333444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
..++ .+|.++.+.|++++|+..|++++..+|++..++..
T Consensus 155 ~~~~-----------------------------------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~ 193 (694)
T PRK15179 155 REIL-----------------------------------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG 193 (694)
T ss_pred HHHH-----------------------------------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 5544 44555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5555555555555555555555554
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.58 E-value=5.2e-13 Score=126.67 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=152.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|+.+...+..+.+..+.|+++.|+..|+++++.+|++......++.++...|+.++|+.++++++.-.+........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 56778888999999999999999999999999999999864444888888999999999999999994444455555556
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
+.++...|+ +++|++++++ ....|++..++..++.+|...++.++|++.+++++..+|.+... ..++.++
T Consensus 109 A~ly~~~gd--------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 109 ARAYRNEKR--------WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 889999999 8888888888 67789999999999999999999999999999999999975544 6666677
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 303 TLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
...++..+|++.++++++.+|++..+..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6678887899999999999999866543
No 68
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.58 E-value=5.8e-13 Score=119.50 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
-.++++.++++++.+|+|+.+.+.++.-|...++.+.|.++.+++++. ..++...|..++.++...+++.+|+.+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999 5567789999999999999999999999999
Q ss_pred HhhCCCC
Q 040440 210 LRKDPLR 216 (355)
Q Consensus 210 ~~~~p~~ 216 (355)
++-.++|
T Consensus 540 l~E~~~N 546 (799)
T KOG4162|consen 540 LEEFGDN 546 (799)
T ss_pred HHHhhhh
Confidence 8877764
No 69
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.58 E-value=1.7e-13 Score=109.02 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHH-HHcCC--HHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ-SYAGE--SEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~ 205 (355)
.+.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++...+..+|.++ ...|+ +++|++.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999974 67787 5999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++++++.+|++..++..+|..+...|+ +++|+..+++
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~--------~~~Ai~~~~~ 169 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQAD--------YAQAIELWQK 169 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 999999999999999999999999999 6666666665
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.58 E-value=2.2e-14 Score=136.97 Aligned_cols=267 Identities=12% Similarity=0.072 Sum_probs=194.7
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhcccc--ccccCcccccccccccc
Q 040440 35 RTPPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLP--FHSIKPAIAAPVAAAAT 111 (355)
Q Consensus 35 ~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~ 111 (355)
..+.++...++++|.++....-...+...|..+...+..| .++...++.+++.. +... .+.+......+...+..
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~--g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL--ALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--cchHHHHHHHHHHHHhCCCCCee
Confidence 3344455677888877766643333444555555444444 44555554443321 1110 00111222223333333
Q ss_pred cccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHH
Q 040440 112 VESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLK 189 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 189 (355)
.-+++. ..|.+. ++++|.++|+++.+ .+...|..++..|.+.|+.++|+++|+++.+..- .+...+..+
T Consensus 362 ~~~~Li------~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 362 ANTALV------DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred ehHHHH------HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334444 235556 99999999998864 3678899999999999999999999999987532 245567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
...+...|+.++|.++|+.+.+..+ .+...|..+...+.+.|+ +++|.+++++....| +..+|..+...
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~--------~~eA~~~~~~~~~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL--------LDEAYAMIRRAPFKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC--------HHHHHHHHHHCCCCC-CHHHHHHHHHH
Confidence 8889999999999999999987533 345678889999999999 999999988755444 45678889999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+...|+++.|...++++++..|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999988764
No 71
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=9.9e-13 Score=103.31 Aligned_cols=171 Identities=19% Similarity=0.134 Sum_probs=155.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...++.+.|..++++.....|++..+....|..+-..|++++|+++|+..++.+|.+..++.....+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33457888999999999989999999999999999999999999999999999999999888888888899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc---CHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES---KHSEALRVY 281 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 281 (355)
+.+.++..+.+.++|..++.+|...|+ |++|.-++++ +-..|.++.+...+|.+++-+| +++-|.++|
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~--------f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGD--------FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999 6778999999999999988766 577899999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.++++++|.+...++.+..+...
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHH
Confidence 99999999888888877665543
No 72
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=8.9e-13 Score=116.19 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=148.4
Q ss_pred cccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 110 ATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
|++..+...++.. +... +.+++.+.+.+..+..+.+ .+.....+..+...|++++|+..++++++.+|++..+
T Consensus 3 p~~~~a~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 3 PDFALGHAAAALL---LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CccHHHHHHHHHH---HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 3444444444433 3323 6777788888877766643 5567778888899999999999999999999988876
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEIL----RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
+.. +..+...|++.++.....+++ ..+|........++.++...|+ +++|+..+++ ....|.+...
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--------YDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCcHH
Confidence 664 555555554444444444443 4456666777788889999998 7777777766 4557777888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDF----RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..+|.++...|++++|+.++++++...|.+. ..|..++.++...|++++|+..|++++...|.
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 88899999999999999999999998876432 34667899999999999999999998776664
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=3.9e-13 Score=111.22 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=117.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE--- 218 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--- 218 (355)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445678899999999999999999999999999999875 57899999999999999999999999999998776
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
+++.+|.++...........+.+++|++.+++ ....|.....+..+..+.... .. .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHH
Confidence 57788888765411000011124455555544 233343333221111111000 00 0112357
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+|.++...|++++|+..++++++..|+.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 88999999999999999999999998764
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.57 E-value=4.6e-13 Score=124.76 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=116.4
Q ss_pred ccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 111 TVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
....+...++.. ....+.+++|+..++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...++.+|
T Consensus 84 ~~~~~~~~La~i--~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARA--LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHH--HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344455555555 223349999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~ 247 (355)
.++...|++++|+.+|++++..+|++..++..+|.++...|+ .++|...|++|++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 55555555555544
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.57 E-value=1.4e-12 Score=114.95 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=123.2
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HcCCCchHHHHHHHHHHHHcCCH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI----ELEPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~ 199 (355)
..+..+++++|...++++++.+|++..++.. +..+...|++..+.....+++ ..+|.....+..+|.++...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3455669999999999999999999988775 556655555444444444443 44666666777889999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCC--ch--HHHHHHHHHHHHHccCH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKS--DL--RDFKLLIAQIKVMESKH 274 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~--~~--~~~~~~la~~~~~~g~~ 274 (355)
++|+..++++++..|++...+..++.++...|+ +++|+..+++ ....+ .. ...+..++.++...|++
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999 7777777776 22222 11 23466899999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 040440 275 SEALRVYEELVKEEP 289 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~ 289 (355)
++|+..|++++...|
T Consensus 203 ~~A~~~~~~~~~~~~ 217 (355)
T cd05804 203 EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999976655
No 76
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=2e-12 Score=114.13 Aligned_cols=201 Identities=16% Similarity=0.112 Sum_probs=155.1
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.++. .++-|+.+|..+++.+|..-..|...+..--.-|..++-..++++++...|.....|.+.+..+...|+...|+.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 4444 667777777777888887777777777777777777777777888887777777777777777777788888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHH--------------------------HHHHHHHHHHHHHHh-hccCCch
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLN--------------------------EVEKRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~--------------------------~a~~~~~~Al~~~~~-~~~~~~~ 257 (355)
++.++++.+|++.+.|..-..+.....+ ++ ..++..++|++++++ ++..|+.
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e-~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDE-LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 8888888777777777655555554444 22 224557778888877 6777888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..+|..+|+++..+++.+.|.+.|...++..|..+..|..++.+-.+.|+.-.|...++++.-.+|++..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 8888888888888888888888888888888888888888888888888888888888888888888743
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=2.6e-13 Score=102.04 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=110.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
+.+++++..+|++....+.++.++...|+ +++|++.++. ....+.+..++..+|.++...|++++|+.+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999 8888888877 45578899999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
++++.+|++...++.+|.++...|++++|+..|+++++++|++.....+..
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999999999999999999999999999866544433
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.55 E-value=1.2e-13 Score=131.93 Aligned_cols=182 Identities=12% Similarity=0.052 Sum_probs=134.2
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
|.+. ++++|.++|+++. +.+...|..+...|.+.|++++|+++|+++.+.. .-+...+..+...+.+.|++++|.
T Consensus 269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 5556 8999999998763 4578889999999999999999999999987653 224557778888888888888888
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
+.++.+++.. +.+..++..+...|.+.|+ +++|.++|++... .+...|..+...|.+.|+.++|++.|+
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--------~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGR--------MEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCC--------HHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888875 4566777888888888888 7777777766432 244567777777777777777777777
Q ss_pred HHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 283 ELVKEEP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 283 ~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
++.+..- -|..++..+...+.+.|+.++|.++|+...+
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7765321 1455566666666677777777777766654
No 79
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.55 E-value=1e-12 Score=123.50 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=143.3
Q ss_pred ccccccchhhhhhhhhhh-ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----
Q 040440 109 AATVESTNESTKDTTSAR-EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---- 183 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 183 (355)
.|....++..+... | ..+++++|++.++..++.+|+....++.+|.++.+.++++++..+ .++...+.+.
T Consensus 27 ~p~n~~a~~~Li~~---~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 27 SLSKFKELDDLIDA---YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CcchHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 34444555555555 7 445999999999999999999999999999999999988887776 6666555544
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 184 ---------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 184 ---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
.+++.+|.||-++|++++|...|+++++.+|+++.+..++|..|... + ++.|..++.+|+..+
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d-L~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D-KEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999888 5 777776666666553
Q ss_pred HhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH--------------------HHHHHHHHHHcCCH
Q 040440 249 KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP--------------------YLCQGIIYTLLRKK 308 (355)
Q Consensus 249 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------------~~~l~~~~~~~g~~ 308 (355)
+..++|.++.+++.+.+..+|++.+. +.-+-..|...++|
T Consensus 180 --------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 180 --------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 44455555555555555555554332 11222455556666
Q ss_pred HHHHHHHHHHHHhCCCChhH
Q 040440 309 DEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 309 ~~A~~~~~~~l~~~p~~~~~ 328 (355)
++++.+++.+++.+|+|...
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred hHHHHHHHHHHhcCCcchhh
Confidence 66666666666666665443
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.54 E-value=1.4e-12 Score=114.95 Aligned_cols=210 Identities=17% Similarity=0.094 Sum_probs=140.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|+.++|...++..+.+++..|++++.+...|..+...|+-++|..+...++..++.....|..+|.++....+|++|+++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 66667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHH---------------------------HHHHHHHHHHHHh---hc-cC
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV---------------------------EKRIEKAMERCKK---EK-KK 254 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~~Al~~~~~---~~-~~ 254 (355)
|+.++.+.|+|...+.-++.+..++++. +.. .+.+..|+.+++. .. ..
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~-~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDY-EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7777777777777777777666666652 111 2335666665555 11 11
Q ss_pred CchHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 255 SDLRD-----FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+.... .......+..+.|.+++|++.+..--...-+........+.++.++|+.++|...|...+..+|++..|.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 22221 2233344555566666666665543332223344556678999999999999999999999999996665
Q ss_pred HHHHHHH
Q 040440 330 EYFVDNM 336 (355)
Q Consensus 330 ~~~~~~~ 336 (355)
..+...+
T Consensus 257 ~~l~~~l 263 (700)
T KOG1156|consen 257 EGLEKAL 263 (700)
T ss_pred HHHHHHH
Confidence 4444333
No 81
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.54 E-value=8.3e-12 Score=121.78 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=122.1
Q ss_pred hccC-CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDV-SYEEKEKEIEQHLAANP-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~ 199 (355)
|.+. ++++|+++|+++.+..- -+...|..+...|.+.|++++|.++|+++... .| +...|..+...|.+.|++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH
Confidence 4444 78888888887766432 24666777777777777777777777777642 23 334566666667777777
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHH----------------------------HHHHHHHHHHHh
Q 040440 200 EAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVE----------------------------KRIEKAMERCKK 250 (355)
Q Consensus 200 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~----------------------------~~~~~Al~~~~~ 250 (355)
++|+++|+++.+.+ +.+...|..+...|.+.|+ +++|. +.+++|+++++.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777776664 3455566666666666666 22221 114455555554
Q ss_pred h--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 040440 251 E--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL--VPR 324 (355)
Q Consensus 251 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~ 324 (355)
. .....+...+..+...|.+.|++++|+++|+++... .| +...|..+...|.+.|++++|.++|+++... .|+
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 2 223344555666666666667777777776666542 23 5566677777777777777777777766543 354
Q ss_pred ChhH
Q 040440 325 NHPY 328 (355)
Q Consensus 325 ~~~~ 328 (355)
...+
T Consensus 754 ~~Ty 757 (1060)
T PLN03218 754 TITY 757 (1060)
T ss_pred HHHH
Confidence 4333
No 82
>PLN03077 Protein ECB2; Provisional
Probab=99.54 E-value=2.7e-13 Score=132.60 Aligned_cols=264 Identities=13% Similarity=0.057 Sum_probs=191.4
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhccccccccCcccccccccccccccc
Q 040440 37 PPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVEST 115 (355)
Q Consensus 37 ~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (355)
+.+...+|+++|.+.....-...+...|..+... ..| ..+...++.+++..-......+.+...+..+...+..+.++
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 3344456777777665443222222333444332 223 45555555544432111111111223333344445555555
Q ss_pred hhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCchHHHHHHHHH
Q 040440 116 NESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EPNEFEWQLLKAQV 192 (355)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 192 (355)
+.. .|.+. ++++|.+.|++. +.+...|..+...|.+.|+.++|+++|+++.+. .|+ ...+..+...
T Consensus 530 Li~------~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 530 LLD------LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCA 598 (857)
T ss_pred HHH------HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Confidence 553 35556 999999999886 567899999999999999999999999999875 344 3456666677
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
+.+.|++++|.++|+++.+..+ .+...|..+..++.+.|+ +++|.+++++....|+ ..+|..+...+..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--------~~eA~~~~~~m~~~pd-~~~~~aLl~ac~~ 669 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--------LTEAYNFINKMPITPD-PAVWGALLNACRI 669 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--------HHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Confidence 9999999999999999985432 355788999999999999 9999999998654444 6667777778888
Q ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 271 ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|+.+.+....+++++++|++...|..++.+|...|+|++|.+..+...+.
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999988653
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.9e-13 Score=112.51 Aligned_cols=191 Identities=18% Similarity=0.097 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEA------- 219 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------- 219 (355)
....+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+....
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 3355677888999999999999999999999999999999999999999999999999999999999987543
Q ss_pred -----HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 220 -----YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD----LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 220 -----~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+..-|.-..+.|. |.+|-+.+.+ +..+|. +..+|.+++.+....|+.++|+..++.++.+++
T Consensus 247 k~le~~k~~gN~~fk~G~--------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGN--------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHHHHhhhhhHhhccc--------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 4555666667777 6666666666 344443 455688899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhccHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKV 346 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 346 (355)
....++...|.++..+++|++|.+.|+++++...+ ...+..+....++.+...++.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999998765 556777777777766555543
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=110.77 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=99.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
..++..+|++|+..|.++|+.+|.++..|.+.+.+|.+.|+++.|++.++.++.++|....+|..||.+|..+|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 34555699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+.|+++++++|++...+..|..+-...++
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999877776666554443
No 85
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.52 E-value=1.4e-11 Score=120.17 Aligned_cols=184 Identities=13% Similarity=0.064 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++++|.++++++.+.... +...|..+...|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 777788888777765432 566777777777788888888888877776543 255667777777777788877877777
Q ss_pred HHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc----cCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 208 EILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK----KKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 208 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
++.+.. ..+...|..+...|.+.|+ +++|.+++++.. ....+...+..+...|.+.|++++|+++|+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~--------~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGA--------VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 776653 2345667777777777777 666666666632 123345566666777777777777777777
Q ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEE-PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++.+.+ +.+...|..+...|.+.|++++|..+|+++.+.
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 776654 335566777777777777777777777776654
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=8.5e-13 Score=99.20 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
+.+++++..+|++..+...+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+...++.+|.++...|+ +++|+..++.
T Consensus 84 ~~~~~~~la~~~~~~g~--------~~~A~~~~~~ 110 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--------PESALKALDL 110 (135)
T ss_pred ChHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 99999999999999998 6666555554
No 87
>PLN03077 Protein ECB2; Provisional
Probab=99.51 E-value=3.9e-13 Score=131.52 Aligned_cols=277 Identities=14% Similarity=0.071 Sum_probs=156.7
Q ss_pred cccCCCCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhccccccccCccccccccccc
Q 040440 32 ISLRTPPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAA 110 (355)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 110 (355)
++...+.++..+++++|.++....-...+...+..+...+..| .+++..++.++...--.....+.+......+...+.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 3444455555678888887776644444445556665555555 566666665554320000000111122222333333
Q ss_pred ccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCch----
Q 040440 111 TVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEF---- 183 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~---- 183 (355)
..-+++. ..|.+. ++++|.++|+++.. .+...|..+...|.+.|++++|+++|+++.+.. |+..
T Consensus 324 ~~~n~Li------~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 324 SVCNSLI------QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHHHHHH------HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 3223332 224444 77777777777542 345667777777777777777777777765442 3321
Q ss_pred ------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 184 ------------------------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 184 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
.++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~- 470 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNR- 470 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCC-
Confidence 1233334445555555555555554432 233345555555555554
Q ss_pred HHHHHHHHHHHHHHHHhh--ccCCchHH----------------------------------HHHHHHHHHHHccCHHHH
Q 040440 234 LNEVEKRIEKAMERCKKE--KKKSDLRD----------------------------------FKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~--~~~~~~~~----------------------------------~~~~la~~~~~~g~~~~A 277 (355)
+++|+.++++. ...|+... +...+...|.+.|++++|
T Consensus 471 -------~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 471 -------CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred -------HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 44555555552 11222221 223455788888999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChhHHHHH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR--LVPRNHPYREYF 332 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~ 332 (355)
...|++. +.+...|..+...|.+.|+.++|+++|++..+ ..|+..++...+
T Consensus 544 ~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 544 WNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 8888876 45788899999999999999999999998876 457766654443
No 88
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.49 E-value=2e-11 Score=104.83 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+.++|.+.+++++..+|+....+..+|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.+...|+ +.+|+.+++. ...+|+++..|..+++.|..+|+..+|.. ..+..|..
T Consensus 383 all~~g~--------~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~ 437 (484)
T COG4783 383 ALLKGGK--------PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYAL 437 (484)
T ss_pred HHHhcCC--------hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHh
Confidence 7777777 6677777766 56667777777777777777776554443 34556666
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 040440 305 LRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~ 322 (355)
.|++++|+..+..+.+..
T Consensus 438 ~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 777778877777777765
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.2e-12 Score=105.91 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=158.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|..+++++|+-.|+++.-.+|.+...+-..|..+...|++++--......+..+.....-|+--+...+..+++..|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999988877778888889999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCH----------
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKH---------- 274 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~---------- 274 (355)
-+++++.+|++..++...|.++...++ .++|+-.|+. ....|...+.|..+..+|...|++
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R--------~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALER--------HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccc--------hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999999999999999999999999 4444444444 333455556666666655555544
Q ss_pred --------------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 275 --------------------------SEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 275 --------------------------~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++|.+++++++++.|....+-..++.++...|.+++++..+++++...|++
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 455566666666777777778888888999999999999999999888875
No 90
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.48 E-value=9.4e-12 Score=106.82 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=133.5
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+.|..+++++|+..++..+...|+|+..+...+.+++..|+..+|.+.+++++.++|+....+.++|..+.+.|++.+|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 34666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
..++..+..+|+++..|..++..|...|+ -.++ ....+..|...|++++|+..+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~--------~~~a----------------~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGN--------RAEA----------------LLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCc--------hHHH----------------HHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999987 3333 34458888999999999999999
Q ss_pred HHHhCCCChHHH
Q 040440 284 LVKEEPRDFRPY 295 (355)
Q Consensus 284 ~l~~~~~~~~~~ 295 (355)
+.+....+...|
T Consensus 451 A~~~~~~~~~~~ 462 (484)
T COG4783 451 ASQQVKLGFPDW 462 (484)
T ss_pred HHHhccCCcHHH
Confidence 988765444444
No 91
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=3.2e-11 Score=98.18 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=146.3
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPN-----DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
++....+...+.++ |... +.+.|+.+-+..++ .|+ ...+...+|.-|...|-+|.|...|....+...--
T Consensus 65 d~~t~e~~ltLGnL---fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa 140 (389)
T COG2956 65 DPETFEAHLTLGNL---FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA 140 (389)
T ss_pred CchhhHHHHHHHHH---HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh
Confidence 33333334444444 4444 88888887776665 333 24567778888888888888888888877655555
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD 256 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~ 256 (355)
..+...+..+|....+|++|++.-++..++.++.. ..+..++..+....+ .++|+..+++ ...++.
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~--------~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD--------VDRARELLKKALQADKK 212 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhCcc
Confidence 56777788888888888888888888888776543 335677777766666 5555555555 455777
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...+-..+|+++...|+|++|++.++.+++.+|+. +.+...+..+|.+.|+.++.+..+.++.+..++.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 77777888888888888888888888888887764 4567777888888888888888888888777654
No 92
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.46 E-value=1.1e-10 Score=95.87 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=129.4
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcC-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEA---LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAG- 197 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g- 197 (355)
.+..+++++|++.|++++...|....+ .+.+|.+|++.+++++|+..+++.++.+|+++ .+++.+|.++...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 366679999999999999999987654 48899999999999999999999999988665 46888887754443
Q ss_pred --------------C---HHHHHHHHHHHHhhCCCCHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 198 --------------E---SEAAIKGFEEILRKDPLRVEA---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 198 --------------~---~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
| ..+|++.|++.++..|+..-+ ...+..+..+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l--------------------------- 174 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------------------- 174 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------------------
Confidence 1 246888999999999987533 22222221111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
..--+.+|..|.+.|.|..|+..++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1123456999999999999999999999998864 578899999999999999998877644
No 93
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=8.5e-12 Score=101.53 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..++.++....+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~------------ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG------------ 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------------
Confidence 34455556666777788888888888888888888888888888888888888888777777655543
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 245 MERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
...-.++...+++++..+|.+..+.+.+|..++..|+|.+|...|+..++..|.
T Consensus 206 --------------------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 206 --------------------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred --------------------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 244567888889999999999999999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHHH
Q 040440 325 NHPYREYFVDNMVAT 339 (355)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (355)
+.+.+..+...+...
T Consensus 260 ~~~rr~~ie~~ia~~ 274 (287)
T COG4235 260 DDPRRSLIERSIARA 274 (287)
T ss_pred CCchHHHHHHHHHHH
Confidence 877766666655444
No 94
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=2.2e-11 Score=106.45 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++|++|.+...+++...|++..+......+.++.++|++|+...++-....-.+ ...+..+.|.++++..++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh-
Confidence 499999999999999999999999999999999999999996655433221111 123688899999999999999888
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-------------------------------ccCC-c
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-------------------------------KKKS-D 256 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-------------------------------~~~~-~ 256 (355)
..++.+.......++++++.|+ |++|+++|+.+ ...+ +
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~~--------ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLER--------YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred --cccccchHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 4456666677778888888888 55554444431 1112 2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC--C--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEE-----PR--D--------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~--~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..+.+++.+-+++..|+|.+|++.++++++.. .+ + ..+...++.++..+|+.++|...|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 45678889999999999999999999995431 11 1 235678999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHH
Q 040440 322 VPRNHPYREYFVDNMVATK 340 (355)
Q Consensus 322 ~p~~~~~~~~~~~~~~~~~ 340 (355)
+|.|.+....+..++.+..
T Consensus 254 ~~~D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALS 272 (652)
T ss_pred cCCCchHHHHHhcchhhhc
Confidence 9999887777777766654
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.45 E-value=2.7e-11 Score=96.11 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 040440 167 EAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246 (355)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~ 246 (355)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..+....+|.+......+|....+.|+ +..|+.
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------~~~A~~ 121 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------FGEAVS 121 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------hHHHHH
Confidence 3666666677789999999 9999999999999999999999999999999999889999999999 999999
Q ss_pred HHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 247 RCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.+ ....|++..+|..+|.+|-+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+...-+.+
T Consensus 122 ~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 122 VLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 9988 678899999999999999999999999999999999999999999999999999999999999999999887767
Q ss_pred hhHHHHHH
Q 040440 326 HPYREYFV 333 (355)
Q Consensus 326 ~~~~~~~~ 333 (355)
......+.
T Consensus 202 ~~v~~NLA 209 (257)
T COG5010 202 SRVRQNLA 209 (257)
T ss_pred hHHHHHHH
Confidence 55544433
No 96
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=2.7e-12 Score=103.69 Aligned_cols=115 Identities=30% Similarity=0.314 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
+-+..-|.-+.+.++|++|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556677777888888888888888888888888888888888888888888888888888888877777777777766
Q ss_pred cCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc
Q 040440 230 SDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g 272 (355)
+|+ +++|++.|++ +..+|++..++..|...-.+.+
T Consensus 162 ~gk--------~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 162 LGK--------YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cCc--------HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 666 4444444433 3335555544444444433333
No 97
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=4.3e-12 Score=94.05 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=94.0
Q ss_pred HHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 040440 142 LAAN-PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 142 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (355)
.... ++..+..+.+|..+...|++++|...|+-+...+|.+...|+.||.++...|+|++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.+|.|+...|+ .+.+..-++.|+..+
T Consensus 107 ~~ag~c~L~lG~-~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN-VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 999999999998 666666666666665
No 98
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=1.6e-10 Score=104.27 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=147.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-----CHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-----ESEA 201 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~ 201 (355)
+.+++++|++.+++.-..-.+....+...|.++.+.|++++|...|..++..+|++...+..+..+..... +.+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 34699999999999888888899999999999999999999999999999999999999888888773333 5677
Q ss_pred HHHHHHHHHhhCCCCHHH------------HHHHHHHHhc----cCch--HHHHH---------HHHHHHHHH-HHhhc-
Q 040440 202 AIKGFEEILRKDPLRVEA------------YHGLVMAYDG----SDKK--LNEVE---------KRIEKAMER-CKKEK- 252 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~------------~~~l~~~~~~----~~~~--~~~a~---------~~~~~Al~~-~~~~~- 252 (355)
-..+|++.....|..... +...+..|.. .|-. +.... ....+.+.- .....
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 788888887777653221 1112222211 1100 00000 111111111 11110
Q ss_pred -----------cCCchH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 253 -----------KKSDLR--DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 253 -----------~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
..+... .+++.++..|-..|++++|+++++++++..|..++.|+..|.++...|++.+|.++++.+.
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 112222 3567889999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC
Q 040440 320 RLVPRN 325 (355)
Q Consensus 320 ~~~p~~ 325 (355)
.+++.|
T Consensus 256 ~LD~~D 261 (517)
T PF12569_consen 256 ELDLAD 261 (517)
T ss_pred hCChhh
Confidence 999876
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=5.7e-12 Score=109.84 Aligned_cols=107 Identities=20% Similarity=0.119 Sum_probs=100.9
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
.++..++|++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++.++|++..+++.+|.++...|++++|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
..|+++++++|++..+...++.+....
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988888775544
No 100
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.6e-10 Score=96.84 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=147.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..++|.+|++...+.-+..+....++..-+.+--++||++.|-.++.++-+..++ .......++.+....|+++.|..
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 55568999999999888877777778888888888899999999999998887443 33467778888888899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH-----------------------------------------------
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV----------------------------------------------- 237 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a----------------------------------------------- 237 (355)
-..++.+..|.++.+......+|...|+. .+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~-~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAW-QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccH-HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999999999998888888888888873 222
Q ss_pred ----------------------HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 238 ----------------------EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 238 ----------------------~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
.+..++|.++.++.-+...+..+...++ ...-++++.=++..++.++..|+++..+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 1222333333333111111111111111 1233666677888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+|..|.+.+.|.+|..+|+.+++..|+..++
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDY 364 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH
Confidence 999999999999999999999999998876554
No 101
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.41 E-value=4.3e-11 Score=96.08 Aligned_cols=164 Identities=21% Similarity=0.217 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV---EAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 221 (355)
+...++..|..++..|+|++|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999987764 45799999999999999999999999999998764 5688
Q ss_pred HHHHHHhccCchH---HHHHHHHHHHHHHHHh-hccCCchHH-----------------HHHHHHHHHHHccCHHHHHHH
Q 040440 222 GLVMAYDGSDKKL---NEVEKRIEKAMERCKK-EKKKSDLRD-----------------FKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 222 ~l~~~~~~~~~~~---~~a~~~~~~Al~~~~~-~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~ 280 (355)
.+|.++....... +.-.....+|+..++. +...|+... --+.+|..|.+.|.|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876654433 3333445555555555 233332211 123356677777777777777
Q ss_pred HHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHH
Q 040440 281 YEELVKEEPRDF---RPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 281 ~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A 311 (355)
++.+++..|+.. .++..++..|.++|..+.|
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777643 4566677777777776644
No 102
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=1.4e-10 Score=95.68 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=151.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI-EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
..+.||..|+.+++-.+..+.+.. ..-..+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++.+|.|.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 344699999999998886555433 5667889999999999999999999988777777899999999999999999977
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
...+ .|+++-....+..+..+.++ -++-+.+-+.+. +..+-...+|.+.+..-.|++|+++|+++
T Consensus 113 ~~~k----a~k~pL~~RLlfhlahklnd--------Ek~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 113 IAEK----APKTPLCIRLLFHLAHKLND--------EKRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHhh----CCCChHHHHHHHHHHHHhCc--------HHHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6555 46666666666666666666 222222222222 22344567788888888999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+..+|+.......++.+|.++.-++-+.+.+.-.+...|+.+....+..-.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999998888888999999999999999999999999999875554443333
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=1.4e-10 Score=106.28 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
...+...|+..+..|++++|.+++.++|+.+|.+..+|..||.+|.+.|+.+++...+-.+-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44566777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF-----RPYLCQGIIY 302 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~l~~~~ 302 (355)
.+|. +++|+-++.+ +...|.+..+....+.+|.+.|+...|...|.+++...|... ......+..+
T Consensus 219 ~~~~--------i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 219 QLGN--------INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred hccc--------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 9998 6666666666 556889999999999999999999999999999999988321 2234457778
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 040440 303 TLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~ 321 (355)
...++-+.|.+.++.++..
T Consensus 291 ~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhhHHHHHHHHHHHHHhh
Confidence 8888889999999999883
No 104
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-11 Score=102.45 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------------HHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------------WQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~la~~~~~~g 197 (355)
++++|...--.+++.++.+.++++..|.+++..++.+.|+..|++++.++|+... .+...|.-.++.|
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 8999999999999999999999999999999999999999999999999998654 3566788889999
Q ss_pred CHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDPLRV----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g 272 (355)
++.+|.+.|.+++.++|.+. ..|.+++.+..+.|+ .++|+.-++. ...++.....+...|.++...+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 458889999999999 7777777766 5668888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040440 273 KHSEALRVYEELVKEEPR 290 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~ 290 (355)
+|++|++.|+++++...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987664
No 105
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.39 E-value=2.3e-11 Score=112.11 Aligned_cols=187 Identities=14% Similarity=0.049 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+...|...+-+++..++....++..+|.+|...-+...|..+|+++.++++.+..++-..+..|....++++|....-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888886666
Q ss_pred HhhCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 210 LRKDPLR--VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 210 ~~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
-+..|.. ...|..+|..|...++ +.+++..++. ...+|.+...|..+|.+|...|+|..|++.|.++..
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n--------~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHN--------LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccc--------hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 5555532 2345667777777777 6777777766 667888888899999999999999999999999988
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
++|.+....+..+.+...+|+|.+|+..+...+.....
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999998888887765443
No 106
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=4.2e-11 Score=88.84 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=100.7
Q ss_pred HhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 210 LRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 210 ~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
..+. ++..+..+.++..+...|+ +++|..+++- ...++.+...|+.||.++..+|+|++|+..|.+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~--------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKE--------FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445 6778889999999999999 9999999988 6778999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+++.+++++|.++...|+.+.|++.|+.++...-.++.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 99999999999999999999999999999999987444333
No 107
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.36 E-value=1.1e-10 Score=98.85 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=133.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC--Cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEP--NE----FEWQLLKAQVQSYAGESEAAIKGFEEILRKDP--LR----VEA 219 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~ 219 (355)
+...|..|...|+|++|.+.|.++....- ++ ...+...+.++... ++++|+++|++++.+.- +. ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44457788899999999999999876521 11 12456666766555 99999999999998742 22 345
Q ss_pred HHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------h
Q 040440 220 YHGLVMAYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------F 292 (355)
Q Consensus 220 ~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~ 292 (355)
+..+|.+|... |+ ++.|...|++|+++++..........++..+|.++...|+|++|++.|+++....-++ .
T Consensus 117 ~~~lA~~ye~~~~d-~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGD-YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 78999999988 66 9999999999999999866556667788999999999999999999999998754321 1
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 293 -RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 293 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..++..+.++...|+...|...+++....+|.-...+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 3456778899999999999999999999988654433
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=1.2e-10 Score=103.14 Aligned_cols=196 Identities=17% Similarity=0.181 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++-++|....+.++..++....+|..+|.++....+|++|+++|+.++..+|++..+|..++.+..+.++++.....-.+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHH-----------------------------------HHHHHHHHHHHHh-hc
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEV-----------------------------------EKRIEKAMERCKK-EK 252 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a-----------------------------------~~~~~~Al~~~~~-~~ 252 (355)
.++..|.....|..++..+...|+. ..+ .+.+++|++.+.. ..
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y-~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEY-KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 7777777777777666666655552 211 1225566665555 23
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE-KQFEKFRRLVPRN 325 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~p~~ 325 (355)
...+...+....+.++.+++++++|..+|...+..+|++...+..+-.++.+-.+.-++. ..|...-+..|..
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 334445556778999999999999999999999999999998888877775333334444 5666655555543
No 109
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.36 E-value=9.4e-11 Score=88.93 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=83.8
Q ss_pred HccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~ 234 (355)
..++...+...+++++..+|+. ..+.+.+|.+++..|++++|+..|++++...++. ..+...++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-- 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-- 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 5788888888899988888877 3467788899999999999999999999877554 2345566666666666
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+++|+..++.....+....++..+|.+|...|++++|+..|+++
T Consensus 101 ------~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 ------YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666554444455555666666666666666666666655
No 110
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.35 E-value=1.1e-10 Score=110.16 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=111.2
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV----- 217 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----- 217 (355)
..+|.+..+|..++..|...|++++|+..++..++..|+....++.+|.++.+.+++.++.-. .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 367889999999999999999999999999999999999999999999999999998887666 6665554443
Q ss_pred --------------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 218 --------------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 218 --------------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.+++.+|.||..+|+ .+++...+++ +..++.+..+..++|..|... +.++|++++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 455555555555555 4444444444 333455555555555555555 5555555555
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+++.. +...+++.++.+++++.+..+|++.++
T Consensus 174 KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 174 KAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 55543 444445555555555556666665443
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.34 E-value=1.7e-11 Score=103.12 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAAN-P-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
+-+.++..+++.+... + .+.......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666555432 2 34556667778888999999999998764 567788888899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+.+.+.+..-....-+.+....|. +.+++|.-+|+++ ...+..+.++..++.++..+|+|++|.+.+++++.
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGG------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTT------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999887766665555555544442 1178888888884 44567788899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChhH
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKK-DEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+|++++++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999998 67888999998899986444
No 112
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.33 E-value=8.1e-11 Score=102.66 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+...|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|++..+++.+|.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~---- 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC---- 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH----
Confidence 4456777788888888888888888888888888888888888888888888888888888887777666655555
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
..+|++++|+..|++++.++|++..+...++.+..++
T Consensus 81 -------------------------------------~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 81 -------------------------------------MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------------------------HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777766665544
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.32 E-value=1.4e-10 Score=90.79 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
+....+++.+|..+...|++++|+.+|++++...++. ..++..+|.++...|++++|+..+++++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3467788999999999999999999999999886653 4689999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+|.++...|+ ...+.+.+++|+ +.+++|++++++++..+|++
T Consensus 112 lg~~~~~~g~-~~~a~~~~~~A~--------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGE-KAEEAGDQDEAE--------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCC-hHhHhhCHHHHH--------------------------HHHHHHHHHHHHHHhhCchh
Confidence 9999988887 222222222222 23566777777777776655
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.31 E-value=1.4e-10 Score=90.48 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND--IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..+...+...++..+.+ ...+..+|.++...|++++|+..|++++.+.++. ..++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665555554 6678999999999999999999999999886653 3589999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
.+++++.+.|.....+..++.++...|+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 9999999999999999999888875543
No 115
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.4e-10 Score=93.59 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+|++|++++..-.+.+|.+...+..+|.+|+...+|..|.++|++.-...|......+..++.+++.+.+.+|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999988989999999999999999998877
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+.....-.......-+.+....++ +-.+..+.++.. ...+.......|-+.++.|+++.|++-|+.+++..
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~D--------l~g~rsLveQlp-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGD--------LPGSRSLVEQLP-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhccccc--------CcchHHHHHhcc-CCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 654311122223333444444555 445555554422 12456778888999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.-++..-++++.++++.|++..|+++..+.++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999999998887764
No 116
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.28 E-value=2.7e-11 Score=79.27 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDP 214 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 214 (355)
+++..|..+|.++...|++++|+..|+++++.+|++..+++.+|.++...| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367889999999999999999999999999999999999999999999999 79999999999999887
No 117
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.28 E-value=8.2e-11 Score=108.61 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=172.0
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE- 182 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 182 (355)
++..++...+++.-++.. |..- |...|.++|+++++.|+.+.+++...+..|....+++.|....-.+-+..|..
T Consensus 484 alrld~~~apaf~~LG~i---Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQI---YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHhcccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 566777888888888777 6666 88999999999999999999999999999999999999999977776666533
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 183 -FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 183 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
...|..+|-.|...++..+|+..|+.+++.+|.+...|..+|.+|...|+ +..|++.+.+ ....|.+...
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------y~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------YSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------eehHHHhhhhhHhcCcHhHHH
Confidence 23577799999999999999999999999999999999999999999999 7778887777 4557888888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+..+.+....|+|.+|+..+...+...... ...+..++..+...|-..+|..++++.++
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999999999988765433 34555556666666767777777777655
No 118
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8e-10 Score=90.18 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---CHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG---ESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 206 (355)
+.++.+..++..+..+|+|++.|..||.+|...|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46667889999999999999999999999999999999999999999999999999999998887765 467899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++++..+|.+..+.+.++..++..|+ |.+|+..++.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--------~~~A~~~Wq~ 252 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--------YAEAAAAWQM 252 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--------HHHHHHHHHH
Confidence 99999999999999999999999999 8888888777
No 119
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.27 E-value=2.7e-11 Score=79.26 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR-KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p 323 (355)
+...+..+|.++...|++++|+..|+++++.+|++..+|+++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788999999999999999999999999999999999999999999999 79999999999999988
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=1.8e-10 Score=103.38 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-------------------
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA------------------- 190 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la------------------- 190 (355)
-...|+.++++. ..|-....+|...|+..+|..+..+-++ .|+++.+|..+|
T Consensus 413 itksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 413 ITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred hHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 556666666653 4566667777777777777777777666 333444433333
Q ss_pred ---------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 191 ---------QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 191 ---------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
......++|.++.+.++..++++|-....|+.+|.+..+.++ ++.|.+.|.. ....|++...
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek--------~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK--------EQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh--------hHHHHHHHHHHhhcCCCchhh
Confidence 333446788889999999999999889999999988888888 7777777777 6678888899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|.+++..|.+.|+..+|...++++++-+-++..+|.+...+..+.|.+++|++.+.+.+.+.
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998887788888888888899999999999998887754
No 121
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=7.1e-09 Score=88.97 Aligned_cols=208 Identities=15% Similarity=0.136 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++..|..++++++..+-.+...|...+.+-++......|..++++++..-|.....|+....+-..+|+...|.++|++-
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999899999999899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+...|+ ..+|......-.+.++ .+.|..++++..........|...+..-.+.|+...|..+|+.+++.-.
T Consensus 168 ~~w~P~-eqaW~sfI~fElRyke--------ieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 168 MEWEPD-EQAWLSFIKFELRYKE--------IERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HcCCCc-HHHHHHHHHHHHHhhH--------HHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 998885 4567766666666666 8889999998444445677788899999999999999999999998765
Q ss_pred CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhccHHh
Q 040440 290 RD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVD 347 (355)
Q Consensus 290 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355)
++ ...+...+..-..++.++.|.-.|+-++..-|.+-. ..++....--.+.|+.+.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhcchhh
Confidence 54 345566777777888999999999999999998733 3344444444455554443
No 122
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.22 E-value=1.3e-09 Score=98.92 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCCchHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---
Q 040440 179 EPNEFEW--QLLKAQVQSYAGE---SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--- 250 (355)
Q Consensus 179 ~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--- 250 (355)
.|.+..+ ++..|..+...++ ...|+.+|+++++++|++..++-.++.++.........-.....++.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4556666665544 7899999999999999999999888887755422110001123344444433
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....+.+..++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|.+.|++++.++|.++++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 233566678888899999999999999999999999999 68899999999999999999999999999999998765
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.22 E-value=6.5e-11 Score=76.39 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
.+|..++..|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999863
No 124
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.21 E-value=6.4e-11 Score=99.52 Aligned_cols=196 Identities=13% Similarity=0.015 Sum_probs=143.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc----C--CCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL----E--PNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~la~~~~~ 195 (355)
...+++...+..|+.+++...++. .+|..+|.+|+..++|++|+++-..=+.+ . -.....--++|..+..
T Consensus 28 ck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv 107 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV 107 (639)
T ss_pred HhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh
Confidence 455689999999999999888764 35778999999999999999986554332 1 1222345678999999
Q ss_pred cCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHhccCch------------HHHHHHHHHHHHHHHH-------h
Q 040440 196 AGESEAAIKGFEEILRKDP------LRVEAYHGLVMAYDGSDKK------------LNEVEKRIEKAMERCK-------K 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~------------~~~a~~~~~~Al~~~~-------~ 250 (355)
.|.|++|+.+..+-+.+.. ....++|++|.+|...|+. -+++...++.|.++|. +
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776532 2356799999999887764 1233344444444444 4
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..........+-++|..|+.+|+|++|+..-+.-+.+... ...++.++|.++.-+|+++.|.++|+..+.+
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 3333334455777888899999999999888776654332 2457888999999999999999999987654
No 125
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.20 E-value=1.1e-10 Score=75.28 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999874
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.20 E-value=4.9e-09 Score=100.29 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc------------------------------
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE------------------------------ 182 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~------------------------------ 182 (355)
..+.|++.+.-+|+....|......+++.++.++|.+.+++++.. ++..
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 456677777778888888888777788888888888888887654 1111
Q ss_pred -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC
Q 040440 183 -------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255 (355)
Q Consensus 183 -------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~ 255 (355)
...+..|..+|...+.+++|.++++.+++...+...+|..++..+++.++ .+++...+++|+..+.+ .
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk----~ 1597 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPK----Q 1597 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcch----h
Confidence 01244456677888899999999999999988889999999999999887 66777777777777544 3
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
....+....|++.++.|+.+.+...|+..+..+|...+.|..+...-.++|+.+.++.+|++++.+.=.-...+.+|...
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 46777788899999999999999999999999999999999999999999999999999999998764334466666666
Q ss_pred HHHHHHhccHHhhhhhh
Q 040440 336 MVATKIFGEKVDRESMA 352 (355)
Q Consensus 336 ~~~~~~~~~~~~~~~~~ 352 (355)
+-..+-.+..+..|...
T Consensus 1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHhcCchhhHHHHH
Confidence 55555544444444433
No 127
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.20 E-value=6.4e-11 Score=80.70 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
+++++|+..++++++.+|. +...++.+|.+|++.|++++|+.++++ ...++.+....+.+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5889999999999999885 466788899999999999999999999 7777888888888899999999999999999
Q ss_pred HHH
Q 040440 207 EEI 209 (355)
Q Consensus 207 ~~~ 209 (355)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 128
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.19 E-value=1.5e-08 Score=81.11 Aligned_cols=178 Identities=18% Similarity=0.145 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..|+..|...++.|+|++|+..|+.+....|..+ .+...++.++++.+++++|+...++.+.++|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 356688888889999999999999999998877554 57888999999999999999999999999887654 466
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH-----------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR-----------------DFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
..|.++...-++...-.....+|+.-++. +...|+.. ..-..+|+.|.+.|.+..|+..+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 66777655443332223333444444444 22222221 1234578999999999999999999
Q ss_pred HHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 284 LVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 284 ~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+++..|+. ..++..+..+|..+|-.++|...-+-.-.-.|+.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99987754 4678888999999999999988755444444554
No 129
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=98.51 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=138.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.-|........++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34555666778999999999999999999975 4667788899999999999999988888 66677777777
Q ss_pred HHHHhccCchHHHH---------------------HHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEV---------------------EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 224 ~~~~~~~~~~~~~a---------------------~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
|.+.....- ++.+ .+.|.++.+.++. ....+-....|+.+|.+..+.++++.|.+.|
T Consensus 464 GDv~~d~s~-yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 464 GDVLHDPSL-YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhccChHH-HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 777544322 2221 2457777777777 6667778888888999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++..+|++..+|++++..|.++|+..+|...++++++-+-++
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999988877544
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.18 E-value=4.3e-09 Score=86.58 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW---QLLKAQVQSYAGESEAAIKGFEEILRKDPLRV---EAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 221 (355)
++..++..|..+...|+|++|++.|++++...|....+ .+.+|.++.+.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45667788889999999999999999999999987654 58999999999999999999999999998764 4577
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF--------- 292 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------- 292 (355)
.+|.++...++. .+... ..+-..........+|+..|++.++..|+..
T Consensus 111 ~~g~~~~~~~~~-------------~~~~~----------~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 111 MRGLTNMALDDS-------------ALQGF----------FGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHhhhhcchh-------------hhhhc----------cCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 777765444320 00000 0000000001112334444444444444321
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 293 --------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 293 --------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
.--+..|..|.+.|.|..|+.-++.+++..|+.......+..
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 123467889999999999999999999999987554444333
No 131
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.18 E-value=2.4e-08 Score=90.36 Aligned_cols=129 Identities=16% Similarity=0.112 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+ +.+|.+.++. ...+..+..+...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--------~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--------LKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhCChhhHHHHHH
Confidence 456778888899999999999999999999999999999999999998 6667666666 4457777778888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC--C-C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEP--R-D------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~--~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+..+.+.|+.++|.+.+......+- . + .+.....|.+|.+.|++..|++.|..+.+.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888899999999988877655431 1 1 234456789999999999999999888764
No 132
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.18 E-value=2.1e-10 Score=96.48 Aligned_cols=192 Identities=14% Similarity=-0.006 Sum_probs=153.3
Q ss_pred CCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHcCCCc
Q 040440 129 VSYEEKEKEIEQHLAANP------NDIEALQTLMEVRIKSQK--------------------LVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~~~~~~~~ 182 (355)
+.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-+++....
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 389999999888775432 246789999999997764 455677777666553222
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 183 ------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 183 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+ ++.|.++|+.++.+..+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHHHH
Confidence 235777888999999999999998887776432 23567899999999998 88888888888888888
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+..........+.+|..|....++++|+.++++-+.+.. ....+++.+|..+...|..++|+.+.++.+++
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777888899999999999999999999998876532 34678889999999999999999998887764
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=6.4e-09 Score=80.28 Aligned_cols=180 Identities=19% Similarity=0.147 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+.-|.-.|.+++.+.|..+++++.+|..+...|+|+.|.+.|+..++++|....+..+.|..++.-|++.-|.+.+.+..
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 45566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+.+|+++---..+-..-.+. + ..+|..-+.+ ..........+ .+...|. |+..+ ...++++.....
T Consensus 161 Q~D~~DPfR~LWLYl~E~k~-d--------P~~A~tnL~qR~~~~d~e~WG~-~iV~~yL--gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 161 QDDPNDPFRSLWLYLNEQKL-D--------PKQAKTNLKQRAEKSDKEQWGW-NIVEFYL--GKISE-ETLMERLKADAT 227 (297)
T ss_pred hcCCCChHHHHHHHHHHhhC-C--------HHHHHHHHHHHHHhccHhhhhH-HHHHHHH--hhccH-HHHHHHHHhhcc
Confidence 99999875433333322222 2 3344333332 11111111112 2222222 22211 112233322222
Q ss_pred CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 290 RD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 290 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
++ .++++.+|.-+...|+.++|...|+-++..+-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 46789999999999999999999998887543
No 134
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=2e-08 Score=86.32 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=164.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+.|+..+..+--+...|...|.--..++++..|..+|++++..+..+...|...+.+-++......|..++++++.+-|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 34566666667677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
.-...|+....+-...|+ ..-|.+++++-.....+..+|......-.+.++.+.|..+|++.+-.+| +...
T Consensus 139 RVdqlWyKY~ymEE~LgN--------i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~ 209 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGN--------IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSN 209 (677)
T ss_pred hHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHH
Confidence 988999888877777777 8888889988666666788889999999999999999999999998888 7889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|...+..-.+.|+..-|..+|+.+++...++..
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999998776533
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=2.1e-09 Score=78.65 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD---LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD- 291 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~- 291 (355)
++.++.+|..+...|+ +++|++.+.. ....++ ....++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3567889999999999 7777777766 233333 35688999999999999999999999999998875
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 292 --FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 292 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+++.+|.++...|++++|..+++++++..|++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6789999999999999999999999999999987443
No 136
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.14 E-value=1.9e-09 Score=78.86 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+|.++...|++++|+
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 5555555555555544443 3344445555555555555555555555444432 234444555555555555555
Q ss_pred HHHHHHHhhCCCCHH
Q 040440 204 KGFEEILRKDPLRVE 218 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~ 218 (355)
..++++++..|++..
T Consensus 97 ~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 97 ATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHCcCChh
Confidence 555555555554433
No 137
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=4.4e-09 Score=82.04 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 040440 163 QKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
+++..+...+.+.++..+.+ ...++.+|.++...|++++|+..|++++.+.++...
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------------------- 70 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---------------------- 70 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh----------------------
Confidence 34555555565554444433 345677788888888888888888888776543211
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HcCCHH----
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT-------LLRKKD---- 309 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~-------~~g~~~---- 309 (355)
...++..+|.+|...|++++|+..|++++..+|.....+..+|.++. ..|+++
T Consensus 71 ----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 71 ----------------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence 12345566777777788888888888888888877777777777777 667766
Q ss_pred ---HHHHHHHHHHHhCCCCh
Q 040440 310 ---EAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 310 ---~A~~~~~~~l~~~p~~~ 326 (355)
+|..++++++..+|++.
T Consensus 135 ~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 135 WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHHhCcccH
Confidence 55666666777888663
No 138
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=1.3e-08 Score=89.57 Aligned_cols=160 Identities=19% Similarity=0.143 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..++.-...+...|+|++|+....+++...|++..+......+..+.++|++|++..+.-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 3444445567789999999999999999999999999999999999999999985554433222112 222677889999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------------------- 290 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------------------- 290 (355)
.+. .++|+..++. .++.+..+....|++++++|+|++|+.+|+.+++.+.+
T Consensus 92 lnk--------~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 92 LNK--------LDEALKTLKG--LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred ccc--------HHHHHHHHhc--ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 998 8888888874 33444667788899999999999999999988643321
Q ss_pred ------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 291 ------------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 291 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+.+.+++.+.++...|+|.+|++.++++++
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345678999999999999999999999943
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.11 E-value=9.3e-09 Score=77.98 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=95.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCch---HHHHHHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDL---RDFKLLIAQI 267 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~---~~~~~~la~~ 267 (355)
..++...+...+++++..+|+. ..+.+.++.++...|+ +++|+..++.. ...++. ..+.+.++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------YDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988 4567789999999999 88888888773 222222 3468889999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|++++
T Consensus 95 ~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999773 3344456788899999999999999999999874
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.09 E-value=9.9e-09 Score=85.00 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 269 VMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..|++++|+..|+++++.+|+ .+++++.+|.++..+|++++|...|+++++..|+.
T Consensus 191 ~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 191 YNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3344444444444444444443 23444444444444555555555555555444443
No 141
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.08 E-value=8.6e-10 Score=75.10 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 163 QKLVEAVDVIDRLIELEPN--EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|+++.|+.+++++++.+|. +...++.+|.+++..|+|++|+.++++ .+.++.+....+.+|.++...|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444442 222333344444444444444444444 33333333333333333333333
No 142
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=5.4e-09 Score=88.44 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.....|..|++.|+|..|...|++++..-..... -+ .++ -+++.+ ....++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~-~ee----~~~~~~---------~k~~~~lNl 263 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FD-EEE----QKKAEA---------LKLACHLNL 263 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CC-HHH----HHHHHH---------HHHHHhhHH
Confidence 4556677888888888888888887765321100 00 000 111111 124568899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+.+|.++++|.+|+..++++|..+|+|..+++..|.++..+|+++.|+..|+++++++|+|...+.-+...
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997665544433
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=3.4e-09 Score=73.76 Aligned_cols=98 Identities=28% Similarity=0.292 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
+++.+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 2 ~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGD--------YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhc--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46778888888888 7888888777 45566667889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+|.++...|++++|..+++++++..|+
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999988763
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.06 E-value=4e-09 Score=73.40 Aligned_cols=82 Identities=28% Similarity=0.337 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35666777777777777777777777777766667777777777777777777777777777777766777777777666
Q ss_pred Cc
Q 040440 231 DK 232 (355)
Q Consensus 231 ~~ 232 (355)
|+
T Consensus 82 ~~ 83 (100)
T cd00189 82 GK 83 (100)
T ss_pred Hh
Confidence 66
No 145
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.06 E-value=6.2e-09 Score=86.21 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~ 201 (355)
.++|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++..+|+ ..++++.+|.++...|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 358999999999999999997 579999999999999999999999999988776 46689999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~ 220 (355)
|+..|+++++.+|+...+.
T Consensus 236 A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHCcCCHHHH
Confidence 9999999999999877543
No 146
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.3e-07 Score=72.67 Aligned_cols=187 Identities=18% Similarity=0.178 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CC-C-chHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EP-N-EFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~-~-~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|.++|.++ +..|....+|+.|-..|.++.+. +. + -...|...+.+| +.++..+|+
T Consensus 29 k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv 93 (288)
T KOG1586|consen 29 KYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAV 93 (288)
T ss_pred chHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHH
Confidence 778888777766 44555666677777777666544 21 1 223455555655 456999999
Q ss_pred HHHHHHHhhCCCCHHH------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 204 KGFEEILRKDPLRVEA------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
.++++++++.-+.... +..++.+|...-.+++.++..|+.|-++++...........+...+..-..+++|.+|
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986554333 4477888876645588888888888888877555555566677778888899999999
Q ss_pred HHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 278 LRVYEELVKEEPRDF-------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+.+|+++....-++. ..++.-|.|+.-.++.-.+...+++..+++|.-.+.+..
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 999999987655443 234556788888899999999999999999987665554
No 147
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=6.9e-08 Score=87.62 Aligned_cols=179 Identities=17% Similarity=0.099 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--PLRVEAYHGLV 224 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~ 224 (355)
++..+|..+.......|+++.+.+.|++++...-...+.|+.++.+|...|.-..|+.+.++.+... |.+...+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4666777777777788888888888888876665666777888888888888888888888877776 66666666666
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCChH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-----------SKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
.++...-+..++++++..+|+..+.. ....-....+..+|.+|..+ ....++++.++++++.+|.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 55555444466666666666665522 12222233444455554322 2234566666677777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+.+.++.-|...++.+.|.++.++++++++.+.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 777777777777777777777777776655443
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.05 E-value=8e-09 Score=89.93 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
..+...++++.|++.++++.+.+|+ +...++.++...++ -.+|++++.+ +...|.+..++...+..+.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------EVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444456666677766666665543 44445666665555 3444554444 3445666677777788888
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
..++++.|+.+.++++...|.+...|+.|+.+|..+|++++|+..+..+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999998877654
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.04 E-value=1e-07 Score=76.63 Aligned_cols=149 Identities=21% Similarity=0.155 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h---ccC
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E---KKK 254 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~---~~~ 254 (355)
....++..|..++..|+|.+|+..|++++...|.. ..+.+.++.++...|+ +.+|+..+++ . ...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------YEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCC
Confidence 45678899999999999999999999999998764 5678999999999999 7777777777 3 344
Q ss_pred CchHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCChHH-----------------HHHHHHHHHHcC
Q 040440 255 SDLRDFKLLIAQIKVMES-----------KHSEALRVYEELVKEEPRDFRP-----------------YLCQGIIYTLLR 306 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~-----------------~~~l~~~~~~~g 306 (355)
+....+++.+|.++.... ...+|+..|+..+...|+...+ -+.+|..|.+.|
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556667888888876543 3458999999999999986422 245788999999
Q ss_pred CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 307 KKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
.+..|+..++.+++..|+......-+..+..+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999999999875554443333333
No 150
>PRK11906 transcriptional regulator; Provisional
Probab=99.03 E-value=2.3e-08 Score=86.76 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHL---AANPNDIEALQTLMEVRIKS---------QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
+.+.|..+|.+++ +.+|+...++..++.+++.. .+..+|.+..+++++++|.++.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 6678888899999 88888888888888888754 34567888888888889999888888898888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+++.|+..|++++.++|+...+++..|.+....|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 89999999999999888888888777766655554
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=99.03 E-value=6.9e-09 Score=77.51 Aligned_cols=99 Identities=11% Similarity=-0.090 Sum_probs=81.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..++..+..+..|.-++..|++++|...|+-+...++.+.+.|..||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34455677888888888889999999999888888888888888888888888999999999888888888888888888
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|.|+...|+ ..+|+..++.
T Consensus 112 gqC~l~l~~--------~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRK--------AAKARQCFEL 130 (165)
T ss_pred HHHHHHhCC--------HHHHHHHHHH
Confidence 888888887 5666665555
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.02 E-value=1.9e-08 Score=78.72 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 181 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
.....++.+|..+...|++++|+.+|+++++..|+... ...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------------------~~~~ 74 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------------------------------RSYI 74 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------------------------------HHHH
Confidence 34456888899899999999999999999887654321 0123
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK--------------KDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~l~~~p~~ 325 (355)
+..+|.++...|++++|+..+++++...|.+...+..+|.++...|+ +++|.+++++++..+|++
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34445555555556666666666666666555555556666655554 688999999999999986
No 153
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.99 E-value=1.9e-09 Score=70.21 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=37.9
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666666666666665555444443
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.98 E-value=7.1e-08 Score=87.86 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=106.7
Q ss_pred CCCCHHHHH--HHHHHHHHccC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 040440 145 NPNDIEALQ--TLMEVRIKSQK---LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--------ESEAAIKGFEEILR 211 (355)
Q Consensus 145 ~p~~~~~~~--~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~ 211 (355)
-|.+..+|. ..|..|...++ .++|+.+|+++++++|++..++..++.++.... +...+.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456666654 45556655544 789999999999999999999988887775542 24456666666666
Q ss_pred h--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 212 K--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 212 ~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
. ++.++.++..++......|+ +++|...+++ ....+ +...+..+|.++...|++++|++.|++++.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~--------~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGK--------TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4 67778888889988888888 5555555555 22345 47789999999999999999999999999999
Q ss_pred CCChH
Q 040440 289 PRDFR 293 (355)
Q Consensus 289 ~~~~~ 293 (355)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 98775
No 155
>PRK15331 chaperone protein SicA; Provisional
Probab=98.98 E-value=1.8e-08 Score=75.34 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=96.9
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
.+.++..+..+..|.-+...|+ +++|..+|+- ...++.+..++..||.++..+++|++|+..|-.+..+++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk--------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGR--------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445556778888988999999 9999999988 456788899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+...+..|.|+..+|+.++|+..|+.++. .|.+...+
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999999999999998 46654443
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.98 E-value=2.6e-08 Score=86.81 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+++.|++++++..+.+|+ +...++.++...++-.+|+..++++++..|.+...+...+..+...++++.|+.+.+++
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 899999999999998875 56678999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
++..|.+...|+.|+.+|...|+ +++|+-.+...
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d--------~e~ALlaLNs~ 294 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGD--------FENALLALNSC 294 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCC--------HHHHHHHHhcC
Confidence 99999999999999999999999 99999888773
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=6e-07 Score=73.76 Aligned_cols=188 Identities=26% Similarity=0.256 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLA--ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ-VQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~ 205 (355)
.++..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++...|++++|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 378888888888887 678888899999999999999999999999999887776555556666 89999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHHHHHHHHHHHHccCHHHHHHH
Q 040440 206 FEEILRKDP---LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 206 ~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+++++...+ .........+..+...++ +++++..+.+ ....+. ....+..++..+...+++++|...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGR--------YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcC--------HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 999988666 344455555555666666 6666666666 333444 577788889999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..++...|.....+..++..+...|.++++...+.+.+...|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998876777888888888778899999999999999886
No 158
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.3e-08 Score=84.74 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP----ND-----------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
+..++|..|...|++++..-. .+ ..++.+++.+|.++++|.+|+...+++++.+|++..+++..|
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG 298 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRG 298 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 444599999999999886322 11 346889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
.++...|+|+.|+..|++++++.|.|..+...+..+..+..+
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888877665544
No 159
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.96 E-value=1.7e-08 Score=85.12 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--CHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--ESEAAIKG 205 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 205 (355)
.+++++|++.+.+. ++.+.......+|...++++.|.+.++.+.+.+.+..-.....+++....| .+.+|...
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34888888877654 678888899999999999999999999998887776666666666666666 69999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCH-HHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKH-SEALRVYEE 283 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 283 (355)
|+++....+..+..+..++.+...+|+ |++|.+.+++ ...++.+.+++.+++.+....|+. +.+.+++.+
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~--------~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGH--------YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT---------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 999998888899999999999999999 8888888877 677889999999999999999998 677788888
Q ss_pred HHHhCCCChHH
Q 040440 284 LVKEEPRDFRP 294 (355)
Q Consensus 284 ~l~~~~~~~~~ 294 (355)
+...+|+++.+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 88888877643
No 160
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.96 E-value=6.3e-09 Score=68.77 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=58.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
..+|...+++++|++++++++..+|++...+..+|.++...|++++|++.|+++++..|++.......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467888899999999999999999988888889999999999999999999999998888877655443
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.95 E-value=6.7e-09 Score=68.64 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=61.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|..+|...+++++|++++++++..+|+++..|..+|.++..+|++++|...|+++++..|++...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 35788999999999999999999999999999999999999999999999999999999987554
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.95 E-value=2.9e-09 Score=69.27 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=57.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+..|++++|++.|++++..+|++..+++.++.+|.+.|++++|...+++++..+|+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999987555433
No 163
>PRK11906 transcriptional regulator; Provisional
Probab=98.94 E-value=2.1e-07 Score=80.98 Aligned_cols=157 Identities=12% Similarity=0.088 Sum_probs=86.2
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 040440 153 QTLMEVRIKSQ---KLVEAVDVIDRLI---ELEPNEFEWQLLKAQVQSYA---------GESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 153 ~~la~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+..|......+ ..+.|+.+|.+++ +++|+...++..++.++... .+..+|.+..+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44444443333 2345666677777 66666666666666655533 133456666666666666666
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
.+...+|.+....++ ++.|+..+++ ....|+....++..|.+....|+.++|++.++++++++|....+-.
T Consensus 339 ~a~~~~g~~~~~~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 339 KILAIMGLITGLSGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHHHHHHHHHhhcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 666666666666665 4444444443 3335666666666666666666666666666666666664433222
Q ss_pred HHHHH-HHHcCCHHHHHHHHHH
Q 040440 297 CQGII-YTLLRKKDEAEKQFEK 317 (355)
Q Consensus 297 ~l~~~-~~~~g~~~~A~~~~~~ 317 (355)
..-.+ .+.....++|+..|-+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhh
Confidence 22112 2223334555555443
No 164
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.92 E-value=1.1e-07 Score=68.48 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL---RVEAYHGL 223 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l 223 (355)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467888899999999999999999998875443 447888999999999999999999999988887 66666677
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.++...|+ .++|++.+
T Consensus 82 Al~L~~~gr--------~~eAl~~~ 98 (120)
T PF12688_consen 82 ALALYNLGR--------PKEALEWL 98 (120)
T ss_pred HHHHHHCCC--------HHHHHHHH
Confidence 777777777 66666654
No 165
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=2.2e-08 Score=84.89 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHhccCchHHH
Q 040440 163 QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP--LR----VEAYHGLVMAYDGSDKKLNE 236 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~~~~~~~ 236 (355)
.++++|...|+++ |.+|...|++++|.+.|.++....- ++ ...+...+.++... ..+.
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~ 92 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDE 92 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHH
Confidence 3677777777665 5677888889999988888876632 11 23355666666555 3888
Q ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHH
Q 040440 237 VEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-SKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 237 a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~ 309 (355)
+...+++|++++............+..+|.+|... |++++|+++|+++++....+ ...+..+|.++...|+|+
T Consensus 93 Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 93 AIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 89999999999988777677788899999999999 99999999999999864322 356788999999999999
Q ss_pred HHHHHHHHHHHhC
Q 040440 310 EAEKQFEKFRRLV 322 (355)
Q Consensus 310 ~A~~~~~~~l~~~ 322 (355)
+|++.|++.....
T Consensus 173 ~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 173 EAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
No 166
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.89 E-value=6.1e-07 Score=89.15 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPN---------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQLLKAQVQ 193 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~ 193 (355)
.++++++...++++....+. .......++.++...|++++|...+++++...+... .+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 44889999999888653221 133455678888999999999999999988544322 2456788889
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CCchHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KSDLRDFKLLIA 265 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~~~~~~~~~la 265 (355)
...|++++|...+++++...... ...+..++.++...|+ ++.+...+++++...+.... .+.....+..+|
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF-LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999764321 2345677888999998 88888888888888776322 122334466789
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.++...|++++|...+++++..... ....+..++.++...|++++|...+.++..+..
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875321 244566789999999999999999999987643
No 167
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=9.4e-07 Score=70.74 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+......-|.+|.+.|++++|+....+. .+.++...-..++.+..+++-|.+.++++.+++.+.. ...|+..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHH
Confidence 4455667778999999999999988763 3556666777889999999999999999998765543 33344443
Q ss_pred h--ccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 D--GSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~--~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
. ..|. ..+..|.-+|++.. +.+..+.+....+.+...+|+|++|...++.++..++++++++.++..+-..
T Consensus 180 v~la~gg------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 180 VKLATGG------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred HHHhccc------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2 2222 12888999999954 4888899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH-HHHHHHHhCCCChh
Q 040440 305 LRKKDEAEK-QFEKFRRLVPRNHP 327 (355)
Q Consensus 305 ~g~~~~A~~-~~~~~l~~~p~~~~ 327 (355)
.|.-.++.. ++.+.....|+.+-
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchH
Confidence 998866654 56666667786533
No 168
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.88 E-value=1.8e-06 Score=79.90 Aligned_cols=199 Identities=17% Similarity=0.079 Sum_probs=144.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+.+++.+|.....+.++..|+..-+....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34458999999999999999999999999999999999999999888887777778888888999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHH---HHHH----------HHH-----------------------HHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNE---VEKR----------IEK-----------------------AMERCK 249 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~---a~~~----------~~~-----------------------Al~~~~ 249 (355)
|++++..+|. .+..+.+-.+|.+.+..... +.+. +-. |...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 77777777777776653111 1000 001 111111
Q ss_pred h-hccC-Cch-HHHHHHHHHHHHHccCHHHHHHHHHHHH-H-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 250 K-EKKK-SDL-RDFKLLIAQIKVMESKHSEALRVYEELV-K-EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 250 ~-~~~~-~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
. .... +.. ..=....-.++..+|++++|.+++..-+ + ..+.+...-......+...++|.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 1 0011 000 0011222335567789999999984333 2 33444455556678888999999999999999999888
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 6
No 169
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.86 E-value=2.6e-09 Score=87.98 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=133.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..++|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...++.++.++.....+|...+..-..+|...+|.+.
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD 187 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKD 187 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34459999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchH-H-------HHH-------------------HHHHHHHHHHHh-hccCCch
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKL-N-------EVE-------------------KRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~-------~a~-------------------~~~~~Al~~~~~-~~~~~~~ 257 (355)
++.++++.|++.+....++.+-.-..... . .|. +.++.++..+.. ......+
T Consensus 188 ~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~ 267 (536)
T KOG4648|consen 188 CETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS 267 (536)
T ss_pred HHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCcc
Confidence 99999999998877655554432111100 0 000 111111111111 0000111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+... +..|.+..+++.++...-+.+..+|.........+.+-.-.|...++...++.++.+.|.+...
T Consensus 268 ~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 268 NQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred ccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence 111111 4445555556666665555555555443344444444455556666666677776666665433
No 170
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.82 E-value=1.5e-07 Score=76.20 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCC
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~ 198 (355)
.|..++|.+|+..|...++..|+. +.+++.||++++.+|++++|...|..+++..|+ -++.++.+|.+...+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 366679999999999999999985 689999999999999999999999999998765 45789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.++|...|+++++.+|+...+...
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999998776543
No 171
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.82 E-value=2e-06 Score=65.20 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
|.+.......+.++..|.. .-.+.+|....+.|++.+|...|++++.- ..++...+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5555555555555544442 22455566666666666666666665532 334445555555666666666666666665
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
..+.+|. ...++....+|+.|..+|++.+|...|+.++...
T Consensus 150 l~e~~pa---------------------------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 150 LMEYNPA---------------------------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HhhcCCc---------------------------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 5555442 1223345556777788888888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
| .+......+..+.++|+..+|...+....+
T Consensus 191 p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 191 P-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8 677777888888888888777766655544
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=5e-06 Score=68.18 Aligned_cols=187 Identities=27% Similarity=0.276 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVEAVDVIDRLIE--LEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.+++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 556677888888887776 478888999999999999999999999987 6777888999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHH-HHhccCchHHHHHHHHHHHHHHHHh-hccCC---chHHHHHHHHHHHHHccCHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVM-AYDGSDKKLNEVEKRIEKAMERCKK-EKKKS---DLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+.+++...+........... ++...|+ +++++..+.+ ....+ .........+..+...++++.|+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGD--------YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 99999988877555555555 7888888 6666666655 22222 3455566667778889999999999
Q ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 281 YEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 281 ~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+.+++...+. ....+..++..+...+++++|...+..++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 9999999998 6899999999999999999999999999999987
No 173
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.78 E-value=7.6e-08 Score=83.51 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=65.8
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW---QLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.+|++..+++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++.++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999999999854 9999999999999999999999999973
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.78 E-value=5.4e-07 Score=64.90 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.+++.+|.++-..|+.++|+.+|++++........ ....+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--------------------------------------~~~a~i~ 43 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--------------------------------------RRRALIQ 43 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--------------------------------------HHHHHHH
Confidence 35677778888888888888888888775443321 1233445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+|..+...|++++|+..+++.+...|+ +......++.++...|+.++|+..+-.++.
T Consensus 44 lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566667777777777777777777676 556666677777777777777777766654
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=3.4e-06 Score=67.76 Aligned_cols=164 Identities=21% Similarity=0.163 Sum_probs=121.5
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcC-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAG- 197 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g- 197 (355)
.+..++|++|+..|+.+....|.. ..+...++.++++.+++++|+..+++-+.+.|.+++ +++..|.+++..=
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 466679999999999999988875 567889999999999999999999999999887655 5777777765432
Q ss_pred -------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc
Q 040440 198 -------ESEAAIKGFEEILRKDPLRVEA-----------------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 198 -------~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~ 253 (355)
-..+|+..|++.+...|+..-+ -..++..|.+.|. +..|...+++.++-+ ..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~~AA~nR~~~v~e~y---~~ 199 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-YVAAINRFEEVLENY---PD 199 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHhcc---cc
Confidence 2357888899999999975421 2355666777776 444444444444433 33
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.+...+.+..+...|..+|-.++|...-.-+-...|++.
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 455567788889999999999999887665555556554
No 176
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.4e-07 Score=74.44 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=129.8
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE 238 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 238 (355)
+++..+|++|++++..-.+..|.+...+..+|.||+...+|.+|.++|++.-...|.........++.+...+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i------ 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI------ 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc------
Confidence 46788999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 239 KRIEKAMERCKKEKKKS-DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 239 ~~~~~Al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
+..|+.+...+...+ -.......-+.+.+..+++..+....++.-. .++.....+.|.+.++.|++++|.+-|+.
T Consensus 94 --~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 --YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred --cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHH
Confidence 888888887754432 2233444556677778888888877776421 25678889999999999999999999999
Q ss_pred HHHhCCCC
Q 040440 318 FRRLVPRN 325 (355)
Q Consensus 318 ~l~~~p~~ 325 (355)
+++...-+
T Consensus 170 AlqvsGyq 177 (459)
T KOG4340|consen 170 ALQVSGYQ 177 (459)
T ss_pred HHhhcCCC
Confidence 99876433
No 177
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=2.3e-07 Score=67.88 Aligned_cols=96 Identities=25% Similarity=0.274 Sum_probs=73.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcC
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAG 197 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g 197 (355)
++++.++|++|++.|+.+....|.. ..+...++.+|+..|++++|+..+++.++++|.++. +++..|.+++.+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 3466678888888888888877763 567778888888888888888888888888776554 6777887777776
Q ss_pred C---------------HHHHHHHHHHHHhhCCCCHHH
Q 040440 198 E---------------SEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 198 ~---------------~~~A~~~~~~~~~~~p~~~~~ 219 (355)
. ..+|...|+++++..|+...+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6 777888888888888876543
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=3.5e-06 Score=70.27 Aligned_cols=178 Identities=11% Similarity=0.024 Sum_probs=128.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+--+||++|...|+-+.+.+.-+.+.+.+++.+++..|.|.+|...-.++ |+.+--...+-.+..+.|+-++-...
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 44459999999999999988778999999999999999999999887765 55554444444555566665554443
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
- +-+. +..+-...++.+....-. |++||+++++ +...++...+...+|.+|.++.-|+-+.+++.--
T Consensus 144 h-~~Lq---D~~EdqLSLAsvhYmR~H--------YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 144 H-SSLQ---DTLEDQLSLASVHYMRMH--------YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred H-HHHh---hhHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3 3332 222333444444333223 8999999999 6777788888888999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...|+...+.+..+...++.=+-..|..-.+...
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999888888887777776544444444444433
No 179
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=4.9e-06 Score=66.59 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
+.+.+..++.-.|+|.-....+.++++.+ |.++.....++.+.++.|+ .+.+..+++...+.-.++........+..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45566777888899999999999999998 5678888899999999998 666666666555554455556666777888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.+|...+++..|...|.+++..++.++.+.++.+.|....|+..+|++.++.++.+.|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999975
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.73 E-value=2.2e-06 Score=64.95 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=88.7
Q ss_pred hccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDVSYEEKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--EFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 202 (355)
-+.+++.+|...|++++. ....+...+..++...+..+++..|...+++..+.+|. .++....+|..+...|++.+|
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 444699999999999987 67788999999999999999999999999999998774 456788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
...|+.++...|+. ......+..+..+|+
T Consensus 180 esafe~a~~~ypg~-~ar~~Y~e~La~qgr 208 (251)
T COG4700 180 ESAFEVAISYYPGP-QARIYYAEMLAKQGR 208 (251)
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHhcc
Confidence 99999999988763 333444555555554
No 181
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=8.3e-06 Score=65.46 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=129.4
Q ss_pred hhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH--------------HHHHHHHHHHc-----
Q 040440 118 STKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVE--------------AVDVIDRLIEL----- 178 (355)
Q Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~--------------A~~~~~~~~~~----- 178 (355)
++-+..++|..++|..++...++.-... .+.+....+...|+..|++.. |+..+....+.
T Consensus 11 ~LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 11 ELFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhH
Confidence 3444555677778887777666654433 566666667777777776542 33333322211
Q ss_pred --------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 179 --------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 179 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
...+..+...-+.+|...|++++|.+..... .+.++.-.-..+..++.+ ++-|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------~d~A 156 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------FDLA 156 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------HHHH
Confidence 1111123444557888899999998877662 345555555666666666 5555
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 245 MERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+.+++.... ++-..+..||..+++ .+++.+|.-+|++.-+..+..+...+.++.++..+|+|++|...++.++.
T Consensus 157 ~~~lk~mq~i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 157 EKELKKMQQI-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHcc-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555553322 223334445555543 36799999999999987777899999999999999999999999999999
Q ss_pred hCCCChhH
Q 040440 321 LVPRNHPY 328 (355)
Q Consensus 321 ~~p~~~~~ 328 (355)
.++++++.
T Consensus 236 kd~~dpet 243 (299)
T KOG3081|consen 236 KDAKDPET 243 (299)
T ss_pred ccCCCHHH
Confidence 99987443
No 182
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.72 E-value=6.8e-07 Score=74.59 Aligned_cols=197 Identities=11% Similarity=0.030 Sum_probs=142.4
Q ss_pred hhccC-CHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHH
Q 040440 125 AREDV-SYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQV 192 (355)
Q Consensus 125 ~~~~~-~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~ 192 (355)
.+++. ++.+++.+....+..-... ..+...++..+...+.++++++.|+++++...++. .++..+|..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 35555 6777777666666543222 35677799999999999999999999988743332 368889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP----LRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p----~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
+....|+++|.-+..++.++.. ++. ...+.++..+...|+ +..|.+.-++|.++.-...+.+.......
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999999999999999988732 222 235677777888887 66677777777777666666667777788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKK-----DEAEKQFEKFRRLV 322 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~l~~~ 322 (355)
.+|++|...|+.+.|...|+++...-. ....+....+.+.....-. -.|++.-++++++.
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 899999999999999999999976422 1234444555554433322 34777777777764
No 183
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.71 E-value=7e-07 Score=65.41 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..++..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|+..|++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46678899999999999999999999999987754 458999999999999999999999999999988764 466
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
..|.++..... ..+..+- ..-...+...+|...|++++...|++..
T Consensus 89 ~~gL~~~~~~~----------~~~~~~~----------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDE----------GSLQSFF----------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhh----------hHHhhhc----------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 66666654421 1111100 1112234456888888888888887643
No 184
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.71 E-value=3.9e-06 Score=83.52 Aligned_cols=173 Identities=15% Similarity=0.026 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV--- 217 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--- 217 (355)
......+.++...|++++|...+.++....+. .......++.++...|++++|...+++++...+...
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 34456677788899999999999988664221 123445677888999999999999999998654322
Q ss_pred --HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----
Q 040440 218 --EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR----- 290 (355)
Q Consensus 218 --~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----- 290 (355)
.+...++.++...|+ ++.+...+++++...............+..+|.++...|++++|...+++++.....
T Consensus 490 ~~~a~~~lg~~~~~~G~-~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 490 RIVATSVLGEVHHCKGE-LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 245677888888888 777777788887776654333333456778899999999999999999999875221
Q ss_pred ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 291 ---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 291 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
....+..+|.++...|++++|...+++++....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 123456788999999999999999999988643
No 185
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.70 E-value=6.5e-06 Score=69.73 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=139.1
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
.+.+++|++.+-.++.++-+..++ ...+....+......|+++.|..-..++.+..|.++.+......+|...|++.+.
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 345555777777777777665333 3445666667777777777777777777777777777777677777777777666
Q ss_pred HHHHHHHHhh------------------------------------------CCCCHHHHHHHHHHHhccCchHHHHHHH
Q 040440 203 IKGFEEILRK------------------------------------------DPLRVEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 203 ~~~~~~~~~~------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
..+..++.+. -..++.....++.-+...|+ .++|...
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~-~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD-HDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC-hHHHHHH
Confidence 6555443221 01234555566666666665 4444322
Q ss_pred H------------------------HHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 241 I------------------------EKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 241 ~------------------------~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
. .+-++..++ ....++++.++..+|..+.+.+.|.+|..+|+.+++..| +...+
T Consensus 286 i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~ 364 (400)
T COG3071 286 IEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDY 364 (400)
T ss_pred HHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhH
Confidence 2 233334444 567888889999999999999999999999999999887 77889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..+|.++.+.|+.++|.+.+++++..
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 186
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.68 E-value=6.9e-08 Score=79.79 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+...|.-|+++|+|++|+.+|.+++..+|.++..+.+.+..|+++.+|..|...++.++.++.....+|...+.+....|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999888899998888888888
Q ss_pred chHHHHHHHHHHHHHH
Q 040440 232 KKLNEVEKRIEKAMER 247 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~ 247 (355)
. ..+|.+.++.++++
T Consensus 180 ~-~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 N-NMEAKKDCETVLAL 194 (536)
T ss_pred h-HHHHHHhHHHHHhh
Confidence 7 55565556555543
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.68 E-value=3.7e-07 Score=69.83 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=84.2
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
..+..++|++|...|..+|+..|.. ...|.+.|.++++++.++.|++...++|+++|....++...+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456668999999999999888764 34567788888899999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
|++|++.|+++++.+|....+....+.+
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999988877665544443
No 188
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.66 E-value=5.7e-08 Score=65.07 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C-C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE---P-R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|+...++..+|.+|..+|++++|+.+|+++++.. + + -..++.++|.++..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446678999999999999999999999999652 2 1 25678999999999999999999999999863
No 189
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.66 E-value=3.8e-08 Score=65.91 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CC-C---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---EP-N---EFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
-..++..+|.+|...|++++|+.+|++++++ .+ + ...++..+|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567888899999999999999999988865 22 2 2346788888888889999998888888865
No 190
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.66 E-value=1.2e-06 Score=70.96 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
.+..+.-++..|+|.+|...|...++.+|+.. .....+++||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~--------------------------------------~~~nA~yWLG 185 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST--------------------------------------YTPNAYYWLG 185 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--------------------------------------ccchhHHHHH
Confidence 56677777777888888888888887777643 1233445556
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.+++.+|+|+.|...|..+.+..|+. ++.++.+|.+...+|+.++|...|+++++..|+...
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 66666666777777777777666543 466777777777777777777777777777776543
No 191
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.65 E-value=1.9e-07 Score=81.06 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=65.8
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP---YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+|++...++++|..|...|+|++|+..|+++++++|++..+ |+++|.+|..+|+.++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999998854 9999999999999999999999999973
No 192
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=6e-07 Score=68.68 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
+-.-|.-++..|+|++|..-|..++..-|....- ... .++.+.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e--~rs----------------------------------Ily~Nra 141 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE--ERS----------------------------------ILYSNRA 141 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH--HHH----------------------------------HHHhhhH
Confidence 3455888999999999999999999988865441 112 2334457
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.+.++++.++.|+..+.++++++|.+..++...+.+|.++..+++|++.|++.++.+|.....+.-
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999987655443
No 193
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.64 E-value=4.4e-07 Score=68.60 Aligned_cols=105 Identities=25% Similarity=0.269 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
|+.|++.++.....+|.+.+.++.-|.++..+.+ +...-+ ....+++|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAq--------fk~g~e-----------------------s~~miedAi 55 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQ--------FKQGPE-----------------------SKKMIEDAI 55 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--------HS-HHH-----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh--------ccCcch-----------------------HHHHHHHHH
Confidence 5778888888888899999888888877765543 211100 112457788
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRK-----------KDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
.-|++++.++|+..++++++|.+|..++. |++|..+|+++...+|++..|+.-+..
T Consensus 56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 56 SKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 88888888888888888888888876653 788888899999999998777655443
No 194
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.61 E-value=3.2e-06 Score=70.66 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----Cch------HHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEF------EWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~------~~~~~la~~~ 193 (355)
.++++++.|+.+++..-++ ..++..+|..+....|+++|+-+..++.++.. ++. .+++.++..+
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 7899999999998754332 35678999999999999999999999987732 222 2467788889
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
..+|+.-+|.++.+++.++. +-.......++.+|...|+ .+.+...|+.|........+.-....++...|.+
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd-~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc 295 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD-LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC 295 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc-HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999998873 2234557788999999998 8889999999999888866666667777777777
Q ss_pred HHHccCHHH-----HHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 268 KVMESKHSE-----ALRVYEELVKEEPR------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 268 ~~~~g~~~~-----A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+....-..+ |++.-+++++.... -...+..++.+|..+|.-++-...+..+-+
T Consensus 296 ~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 296 LETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 765544444 88888888775432 235678899999999888777777666543
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=3.8e-05 Score=59.91 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....++..|..|-..|-+.-|.-.|.+++.+.|+.++++..+|..+...|+|+.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR--DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.-.|+ +.-|.+-+.+ -..+|.++ .+|..+. ...-+..+|..-+.+-.+...+..+.|+..+..
T Consensus 144 YY~gR--------~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y--- 209 (297)
T COG4785 144 YYGGR--------YKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY--- 209 (297)
T ss_pred eecCc--------hHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---
Confidence 88888 6666665555 23333333 2232222 234567777766655444333344444433322
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhH
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+..+ ...++++..-..++..+
T Consensus 210 LgkiS~-e~l~~~~~a~a~~n~~~ 232 (297)
T COG4785 210 LGKISE-ETLMERLKADATDNTSL 232 (297)
T ss_pred HhhccH-HHHHHHHHhhccchHHH
Confidence 333221 23445555444444333
No 196
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.59 E-value=1e-06 Score=66.69 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ----------KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE-- 198 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-- 198 (355)
|+.|.+.++.....+|.+.+.++.-|.++..+. -+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999888887653 35678888889999999999999999998877653
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 199 ---------SEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 199 ---------~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
|++|.++|+++...+|++......|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 77888899999999999876554443
No 197
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.56 E-value=1.3e-05 Score=77.69 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=138.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+.|+++.+.. +-..++..|..+|...+++++|.++++.+++...+....|..++..+.++++-+.|...++++++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 34444444422 22345677888889999999999999999999888888999999999999999999999999999998
Q ss_pred C--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C
Q 040440 215 L--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--P 289 (355)
Q Consensus 215 ~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~ 289 (355)
. +.+.....+++.++.|+ .+++..+|+. +...|...++|..+.+.-.+.|+.+.+..+|++++.+. +
T Consensus 1596 k~eHv~~IskfAqLEFk~GD--------aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGD--------AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCC--------chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7 77888889999999999 8888889988 67789999999999999999999999999999998764 4
Q ss_pred CChHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 040440 290 RDFRPYLCQGIIYTL-LRKKDEAEKQFEKFR 319 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l 319 (355)
.....++..-.-|.+ .|+-+.....=.+|.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 444444444444443 355444333333333
No 198
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=6e-06 Score=68.42 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=128.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc---hHHHHHHHHHHHHcCCHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE---FEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~g~~~~ 201 (355)
..+++..+|....++.++..|.+.-++..--..++.+|+.+.-...+++++-. +++. ....-+++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 66678889999999999999999999999999999999999999999999877 5554 3345567788899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH-----HHHHHHHHHHccCHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF-----KLLIAQIKVMESKHSE 276 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~ 276 (355)
|.+..++++++++.+.-+...++.++...++ ++++.++..+....-..... |...|.+++..+.|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--------~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGR--------HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcch--------hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999 89999888874333222221 4556888899999999
Q ss_pred HHHHHHHHH
Q 040440 277 ALRVYEELV 285 (355)
Q Consensus 277 A~~~~~~~l 285 (355)
|+++|++-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999998755
No 199
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.53 E-value=6.9e-06 Score=69.44 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY-AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777777777778888888888886555567778888887666 4566668888888888888888888877777777
Q ss_pred cCchHHHHHHHHHHHHHHHHh-hccCCc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 230 SDKKLNEVEKRIEKAMERCKK-EKKKSD---LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~-~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
.++ .+.+..++++ ....+. ...+|......-.+.|+.+...++.+++.+..|.+
T Consensus 83 ~~d--------~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LND--------INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT---------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCc--------HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 776 5666666665 222222 23466666777777777777777777777776653
No 200
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.53 E-value=9.1e-06 Score=57.82 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+++.|++.|.+++..-|..+.+|++.+..+.-.|+.++|++-+++++++..... .++...|.+|...|+-+.|...
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD 137 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence 555555555555555555555555555555555555555555555555432221 1344555555555555555555
Q ss_pred HHHHHhhC
Q 040440 206 FEEILRKD 213 (355)
Q Consensus 206 ~~~~~~~~ 213 (355)
|+.+-++.
T Consensus 138 Fe~AA~LG 145 (175)
T KOG4555|consen 138 FEAAAQLG 145 (175)
T ss_pred HHHHHHhC
Confidence 55555443
No 201
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.51 E-value=2.9e-06 Score=60.28 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV----EAYHGLVMAY 227 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~ 227 (355)
+...|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++.+++++++..+.. .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999965433 3477889999
Q ss_pred hccCchHHHHHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
...|+ .+.+...|+.|-++-.
T Consensus 126 Rl~g~-dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGN-DDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCc-hHHHHHhHHHHHHhCC
Confidence 99988 8888888998877643
No 202
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.49 E-value=1.7e-05 Score=67.11 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK-SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
..+.|..+|.++++..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|+.+|++
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 46667777777765555556666666666555 44555577777777777777777776666667777777777777777
Q ss_pred HHhhCCCCH---HHHHHHHHHHhccCc
Q 040440 209 ILRKDPLRV---EAYHGLVMAYDGSDK 232 (355)
Q Consensus 209 ~~~~~p~~~---~~~~~l~~~~~~~~~ 232 (355)
++..-+... ..|......-...|+
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 776654433 455555555555555
No 203
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=6.2e-05 Score=59.77 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=126.5
Q ss_pred cccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----
Q 040440 110 ATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIEL---- 178 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 178 (355)
|.+..+..........|... +|++|...+.++.+-..++ ..++...+........+.++..+++++..+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33333333333333345555 8899998888888644333 345556677777888899999999998776
Q ss_pred -CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 179 -EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 179 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
.|+....-...+--.....+.++|+.+|++++.+..++. +.+...++++.+... +.++...+.+-..+..+.
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATAFLKEGVAADKC 183 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHHHHHhhhHHHHH
Confidence 333333344445556677889999999999888744322 334455666666665 222222222222222233
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE----PRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...+.....+.....+|.-..+|..|..+++..-+.. +++..+..+|-..| ..|+.++....+..
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 3444445556666667777789999999998876543 44556666666555 56777777766543
No 204
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.45 E-value=0.00029 Score=63.65 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccCCchHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKL 262 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~ 262 (355)
|..++......|-++.....|++++.+.--.+....+.+..+.... +++++.+.+++ +-..|...++|.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~--------yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK--------YFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--------HHHHHHHHHHcCCccCCCccHHHHHH
Confidence 3444444444444444444444444444444444444444333332 35555555555 223344445544
Q ss_pred HHHHHHH---HccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 263 LIAQIKV---MESKHSEALRVYEELVKEEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 263 ~la~~~~---~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
..-.... .....+.|...|+++++..|.. -.++...+..-.+.|--..|+..|+++-..-
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 4333222 2345677777777777766632 2345555666666676677777777665443
No 205
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.43 E-value=6.3e-05 Score=67.72 Aligned_cols=170 Identities=12% Similarity=0.128 Sum_probs=105.7
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE-----FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL- 215 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 215 (355)
..+|+++.-|..... +..|+..+-+..|.++++. +|.. ...|..+|..|...|+.+.|...|+++.+..-.
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 456777777766544 4567888888888888764 4432 246888888888888888888888888876422
Q ss_pred ---CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC-------------------chHHHHHHHHHHHHHccC
Q 040440 216 ---RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS-------------------DLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 216 ---~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-------------------~~~~~~~~la~~~~~~g~ 273 (355)
-..+|...|..-.+..+ ++.|+.+.+...-.| ....+|..+++.....|-
T Consensus 421 v~dLa~vw~~waemElrh~~--------~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHEN--------FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 23455555555444444 555555554411111 122345556666666667
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++....+|++++++.--.+.+..+.|..+....-++++.+.|++.+.+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 7777777777766655556666666666666666666666666666554
No 206
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00014 Score=57.82 Aligned_cols=172 Identities=10% Similarity=0.035 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKD-----PLRVE 218 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~ 218 (355)
..|..-+.+|...+++++|...+.++++-..++.. .+-..+.+......+.++..+|+++.... |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 44556677888899999999999999976554433 24445666777889999999999998874 33322
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK------EEPRDF 292 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~~~~~ 292 (355)
.-...+.-.....+ .+.|++.|.+++.++++........+.+-..++++.+...+++|-..+.+-.. ..+.-.
T Consensus 112 maleKAak~lenv~-Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 112 MALEKAAKALENVK-PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 22222222223323 77888889999999888666666777888889999999999999887776532 223334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
..+.....+|....+|..|..+++...++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 556677777788889999999999877653
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.35 E-value=1.6e-06 Score=50.54 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
++..+|..|...|++++|++.|+++++.+|+++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
No 208
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=0.00012 Score=60.19 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=134.4
Q ss_pred CcccccCCCCCCccchHHHHHHHHHHHHhccccccc-c---Ccccc--cccccccccccchhhhhhhhhhhccCCHHHHH
Q 040440 62 PSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHS-I---KPAIA--APVAAAATVESTNESTKDTTSAREDVSYEEKE 135 (355)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 135 (355)
|.+..--.|++.|....+.++.-...-+-|++.... . .+.++ .++..-|++.-....-.- ..+.....+..+
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV--dgF~G~qPesql 122 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV--DGFQGAQPESQL 122 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc--cccCCCCcHHHH
Confidence 444444456666765555555555544444433210 0 12222 244444433222211000 002222444333
Q ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 136 -KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 136 -~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+.+++.+. ...+.-...+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....
T Consensus 123 r~~ld~~~~---~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 123 RQFLDKVLP---AEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhcC---hHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 33343333 23445566677788999999999999999999999999999999999999999999888766443322
Q ss_pred CCHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC
Q 040440 215 LRVEAY-HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RD 291 (355)
Q Consensus 215 ~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~ 291 (355)
+....- ......+.+... ..+...+-.+...+|++....+.+|..|...|+++.|.+.+-..++.+- .+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~--------~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAA--------TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred hhHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 211111 011122222221 2222333333556788888888888888888888888888877776644 34
Q ss_pred hHHHHHHHHHHHHcCCHHHH
Q 040440 292 FRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A 311 (355)
..+...+-.++...|..+.+
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 272 GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHH
Confidence 55555566666555544333
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.34 E-value=1.6e-06 Score=50.55 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 300 (355)
.++..+|..|...|++++|++.|+++++.+|++..+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456777888888888888888888888888888888877764
No 210
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.33 E-value=0.00021 Score=61.74 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQK------------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
...+++.+..+|.|+++|..++...-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456788899999999999998876544322 56778899999999999999888888888899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHhhccCC------------chHHHHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGS--DKKLNEVEKRIEKAMERCKKEKKKS------------DLRDFKLLIAQIK 268 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~Al~~~~~~~~~~------------~~~~~~~~la~~~ 268 (355)
.+.+++++..+|++...|..+....... +-.+......|.+++..+....... ....+...+....
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776665442 2237788888999999888732221 2233455666777
Q ss_pred HHccCHHHHHHHHHHHHHhC
Q 040440 269 VMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~ 288 (355)
...|..+.|+..++-.++.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 78899999999998888764
No 211
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.31 E-value=0.00066 Score=57.84 Aligned_cols=114 Identities=18% Similarity=0.054 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
...|...-.++.++.|+....-..-+..+.+.|+ ..|+-.+++..-+....+.+ +..|....--+.++
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~--------~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~ 312 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGN--------LRKGSKILETAWKAEPHPDI----ALLYVRARSGDTAL 312 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc--------hhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHH
Confidence 3444444455566677777777777777777777 55555555542111111222 22222222222233
Q ss_pred HHHHH---HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 279 RVYEE---LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 279 ~~~~~---~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.-+++ +..+.|++.+.....+......|++..|..--+.+....|.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 22222 22344455555555555555555555555555555555544
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=0.00016 Score=58.26 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAYHGL 223 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l 223 (355)
+.+.+..++.-.|+|.-.+..+.++++.+ |.++.....+|.+..+.||.+.|..+|+++-+.. ..+..+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45677888889999999999999999998 5677788899999999999999999999665432 2234456677
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+.++...++ +-.|...+.+ ...++.++.+..+.|.|....|+..+|++..+.++...|..
T Consensus 259 a~i~lg~nn--------~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNN--------FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccc--------hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777777777 7777777766 56678888888899999999999999999999999999864
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.30 E-value=0.00068 Score=57.77 Aligned_cols=205 Identities=17% Similarity=0.085 Sum_probs=131.7
Q ss_pred cccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 112 VESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
....++.+.+...+.-.+++++|.+.|+.++. +|+. .-.+..+-.--...|+.+.|+.+-+++....|.-..++...-
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 44455555555455556699999999998876 3332 222233333334789999999999999999998888777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC---CCCHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKD---PLRVE---AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~---p~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
...+..|+++.|+++.+...... ++-.+ +...-+......+- +...|.....+ .+..++....-..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-------dp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-------DPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhhcCCccchHHHH
Confidence 77889999999999987766542 22111 11111111111111 13444444444 4557777788888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCChhHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF---RRLVPRNHPYR 329 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---l~~~p~~~~~~ 329 (355)
-+..+++.|+..++-.+++.+.+..| ++.++ +..++.+.|+. ++.-++++ ..+.|++....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEP-HPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCC-ChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 89999999999999999999999988 45443 23344455554 44444444 44678775443
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.30 E-value=0.00011 Score=64.63 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=112.9
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---------------------c-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---------------------E- 182 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------------------~- 182 (355)
+....+.+.-++...++++.+|+.+++|..++.- ......+|.++|+++++.... +
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 3555689999999999999999999999988763 233456777777776654100 0
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CC
Q 040440 183 ---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KS 255 (355)
Q Consensus 183 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~ 255 (355)
..+...+|.|..+.|+.++|++.++++++.+|. +..+..++..++...+. |.++..++.+-.+ .|
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--------Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--------YADVQALLAKYDDISLP 327 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--------HHHHHHHHHHhccccCC
Confidence 123566889999999999999999999988764 55678899999999988 7777777777332 23
Q ss_pred chHHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHHhCCCChHHH
Q 040440 256 DLRDFKLLIAQIKVM-ESK---------------HSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 256 ~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
....+.+.-|.+-.+ .++ -..|++.+.++++.+|.-+..+
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 444444444433222 111 2346788889998888655443
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00018 Score=56.79 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=101.4
Q ss_pred HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHhccCchH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD----P--LRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~ 234 (355)
-.+++++|.++|.++-.. |....++..|-..|.++-+.. . +-...|...+.+|.+. + .
T Consensus 26 g~~k~eeAadl~~~Aan~--------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~-~ 89 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM--------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-D-P 89 (288)
T ss_pred CCcchHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-C-h
Confidence 446889999999887532 233333334444444333321 1 1223344445555444 3 6
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-SKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRK 307 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~ 307 (355)
++|..-+++|++++........-...+..+|.+|... .++++|+.+|+++-+....+ -..+...+......|+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777778888888888666666677788899999865 89999999999998765432 2346667777889999
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 040440 308 KDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 308 ~~~A~~~~~~~l~~~p~~~ 326 (355)
|.+|+..|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999887655553
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.28 E-value=0.00055 Score=59.24 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSY---AGESEAAIKGFEEIL-RKDPLRVEA 219 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~-~~~p~~~~~ 219 (355)
+++....+-..|....+|+.-+++.+.+-.. .++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4566778888899999999999999988766 44566778889999998 999999999999944 456778999
Q ss_pred HHHHHHHHhccCch-HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH--------H----
Q 040440 220 YHGLVMAYDGSDKK-LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV--------K---- 286 (355)
Q Consensus 220 ~~~l~~~~~~~~~~-~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~---- 286 (355)
+..+|.+|...-.. ...-...+++|++.|.+.-....+...-.+++.++...|.-.+.....++.. +
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 99999998654211 0012344888888888832222333344555666666665333322222221 1
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
....+.+.+-.++.+..-.|++++|.+.+++++++.|..-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12245677778889999999999999999999999886533
No 217
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.27 E-value=0.00013 Score=64.18 Aligned_cols=167 Identities=12% Similarity=0.139 Sum_probs=113.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
.+....++..+.+.-++...++++++|+..++|..++.- ...-..+|.++|+++++....... ........|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~- 245 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGH- 245 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccc-
Confidence 344455677888889999999999999999999888762 344578899999999886432211 1111111111
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR--DFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~g~~~~A 311 (355)
.-+.. . .........+...+|.+..+.|+.++|++.++++++..|. +..++.++..++..++.|.++
T Consensus 246 -------~~e~~---~-~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 246 -------FWEAW---H-RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred -------hhhhh---h-ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 11110 0 0111222445677899999999999999999999988774 467899999999999999999
Q ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHHH
Q 040440 312 EKQFEKFRRLV-PRNHPYREYFVDNMVATK 340 (355)
Q Consensus 312 ~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~ 340 (355)
...+.+.-++. |+. ....+...++..+
T Consensus 315 q~lL~kYdDi~lpkS--Ati~YTaALLkaR 342 (539)
T PF04184_consen 315 QALLAKYDDISLPKS--ATICYTAALLKAR 342 (539)
T ss_pred HHHHHHhccccCCch--HHHHHHHHHHHHH
Confidence 99999875442 333 3334445555444
No 218
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=8e-05 Score=59.19 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++.++++|+...|+|-++++....++..+|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 34678899999999999999999999999999999999999999999999999999999999999975
No 219
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.23 E-value=2.6e-06 Score=74.00 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=96.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.....+|+.|+..|.++|+.+|+++..+...+..+++.+++..|+.-+.++++.+|....+|+..|......+++.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.|++.....|+++.+...+..|-
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999887766664
No 220
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=8.6e-06 Score=64.27 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
.|+.|+..|.++|..+|..+..|.+.+.+|++..+|+.+..-..++++++|+.....+.+|........|++|+..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 040440 210 LRK 212 (355)
Q Consensus 210 ~~~ 212 (355)
..+
T Consensus 105 ~sl 107 (284)
T KOG4642|consen 105 YSL 107 (284)
T ss_pred HHH
Confidence 765
No 221
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.20 E-value=1.7e-06 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=20.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAV 169 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 169 (355)
|+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666666666666666666666666654
No 222
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.19 E-value=1.9e-06 Score=46.86 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 223
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.18 E-value=5.7e-05 Score=69.90 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH----------hhCC----------
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL----------RKDP---------- 214 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------~~~p---------- 214 (355)
+-..|...|.|++|.++.+.--++ .-...|++.+..+...+|.+.|+++|+++- .-+|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 334455556666665554432111 112356666666666677777777776532 1122
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
.+...|.+.|......|+ ++.|+..|..|.++|. +.++..-+|+.++|-++.++ ..|..+
T Consensus 910 ~d~~L~~WWgqYlES~Ge-mdaAl~~Y~~A~D~fs--------------~VrI~C~qGk~~kAa~iA~e-----sgd~AA 969 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGE-MDAALSFYSSAKDYFS--------------MVRIKCIQGKTDKAARIAEE-----SGDKAA 969 (1416)
T ss_pred cchHHHHHHHHHHhcccc-hHHHHHHHHHhhhhhh--------------heeeEeeccCchHHHHHHHh-----cccHHH
Confidence 123334445555555555 4444444444444332 22233334444444443332 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
-+.+|..|...|++.+|...|.++.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777888888888888887777653
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.17 E-value=0.00068 Score=58.65 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=112.4
Q ss_pred hccC-CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHH-
Q 040440 126 REDV-SYEEKEKEIEQHLAA----NPNDIEALQTLMEVRIK---SQKLVEAVDVIDRL-IELEPNEFEWQLLKAQVQSY- 195 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~- 195 (355)
|... +|+.-+++.+.+-.. -++...+....|.++.+ .|+.++|+.++..+ ....+.+++.+..+|.+|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 5555 999999998887665 45567778888888888 99999999999995 45566788888889987753
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----Hh-hccCCchHHHHH
Q 040440 196 --------AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC----KK-EKKKSDLRDFKL 262 (355)
Q Consensus 196 --------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~----~~-~~~~~~~~~~~~ 262 (355)
....++|+..|.++.+.+|+.-.. .+++.++...|...+...+.-+-++.+. ++ ......+....-
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~A 309 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVA 309 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 224789999999999998654332 3444455555543332221111121111 11 112223344455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
.++.+.+..|++++|.+.++++++..|..
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 67788888999999999999999986643
No 225
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.16 E-value=0.00049 Score=53.01 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCCchH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHH
Q 040440 167 EAVDVIDRLIELEPNEFE---WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
+.....++.+..++.... +-..++..++..|++++|+..++.++....+. ..+-.+++.+....+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-------- 141 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-------- 141 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------
Confidence 444444555555544433 34566777888888888888888877643221 1123344444444444
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+++|+..+................|+++...|+-++|+..|++++...
T Consensus 142 ~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 142 ADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455555444433333333334444444444555555555555444443
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=4.3e-05 Score=60.43 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+..-|..++...+|+.|+..|.++|.++|..+..|.+.+.++.+..+++.+.....++++++|+.....+.+|.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 040440 232 KKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~ 250 (355)
. ++.++..+.+|..+++.
T Consensus 93 ~-~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 93 G-YDEAIKVLQRAYSLLRE 110 (284)
T ss_pred c-ccHHHHHHHHHHHHHhc
Confidence 7 66666666666666655
No 227
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.08 E-value=0.00019 Score=67.03 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=92.4
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK 239 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 239 (355)
...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++......+..+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~------- 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK------- 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-------
Confidence 4667888888888888888888888888888888888888888877777666667777777777777777776
Q ss_pred HHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHH
Q 040440 240 RIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYT 303 (355)
Q Consensus 240 ~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~ 303 (355)
++++..++++ ....|. ......+-.+|.+.++|.+-.+.--++.+..|.++. .|..+..+..
T Consensus 93 -~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 93 -LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred -hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 6666666666 344455 666666666666666666655555555556665543 3333333333
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.07 E-value=0.00032 Score=63.80 Aligned_cols=120 Identities=19% Similarity=0.115 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.|.++++...+..|+..-.+...|.++...|+.++|++.|++++.....- .-.++.++.++..+++|++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 78899999999999999999999999999999999999999999988532222 22588899999999999999999
Q ss_pred HHHHHhhCCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEA-YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|.++.+.+.-.... .+..|.|+...++ .+.+...-++|.+++.+
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHH
Confidence 99999976654444 4566677777776 32333333455544444
No 229
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.07 E-value=8.8e-06 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
No 230
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.06 E-value=1.3e-05 Score=43.69 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777777777777777777777777777753
No 231
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00053 Score=57.27 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=113.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH---HHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-DPLRV---EAYHGLVMAY 227 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~---~~~~~l~~~~ 227 (355)
+...+.+.+..|++.+|...++++++..|.+.-++..--.+++..|+...-...+++++-. +++.+ .+.-.++-.+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677888888888888888888888777777778888888888888888888876 55543 2333445556
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD----FRPYLCQGIIY 302 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~l~~~~ 302 (355)
...|- |++|.+..++ ...++.+.......+.++...|+..++.++..+.-..-... ..-|...+.++
T Consensus 186 ~E~g~--------y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 186 EECGI--------YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHhcc--------chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 66666 6666666655 45577777777888888888888888888877643221110 12344567778
Q ss_pred HHcCCHHHHHHHHHHHH
Q 040440 303 TLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l 319 (355)
...+.|+.|+++|..-+
T Consensus 258 iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREI 274 (491)
T ss_pred hcccchhHHHHHHHHHH
Confidence 88889999999888754
No 232
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00079 Score=55.44 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=87.8
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ-LLKAQVQSYAGESEAA 202 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A 202 (355)
+..+.+++.+|...+..++...|++.++...++.+|...|+.+.|...+...-.......... ......+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566999999999999999999999999999999999999999999987543332221111 1112333344443333
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..+++.+..+|++.+..+.++..+...|+ .+.|++.+-.
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~--------~e~Ale~Ll~ 261 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGR--------NEAALEHLLA 261 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 23456677799999999999999999999 8888877654
No 233
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.94 E-value=3.1e-05 Score=42.13 Aligned_cols=31 Identities=32% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
+++.+|.++...|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.94 E-value=2.5e-05 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPN 181 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 181 (355)
+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555543
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.92 E-value=0.0013 Score=59.82 Aligned_cols=155 Identities=16% Similarity=0.015 Sum_probs=112.2
Q ss_pred HHccCHHHHHHHHHHHHHcCCCc-hHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNE-FEW------QLLKAQVQS----YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
--.||-+.++..+.++.+...-. +-+ |+.....+. ...+.+.|.++++...+..|+..-..+..|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35699999999999987732211 111 111111111 2457788999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHh-hccC----CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK-EKKK----SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-FRPYLCQGIIY 302 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~-~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~ 302 (355)
..|+ .++|++.+++ .... .-..-.++.++.++..+++|++|..+|.++.+.+.-. ....+..|.++
T Consensus 279 ~~g~--------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 LKGN--------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HhcC--------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999 6666666654 1111 1223447889999999999999999999999865533 34456678899
Q ss_pred HHcCCH-------HHHHHHHHHHHHhC
Q 040440 303 TLLRKK-------DEAEKQFEKFRRLV 322 (355)
Q Consensus 303 ~~~g~~-------~~A~~~~~~~l~~~ 322 (355)
...|+. ++|.++|+++-.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999 88888888876554
No 236
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00045 Score=64.23 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH----------HHcCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRL----------IELEPN----------EFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~----------~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
..|++.+..+...+|.+.|+++|+++ +..+|. +...|...|......|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 35788888888999999999999984 222332 3345777888888899999999999886
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
-. |+.+..+.+-+|+ .++|-.+.++ ..+..+.+.+|+.|...|+..+|+.+|.++-
T Consensus 939 ~D--------~fs~VrI~C~qGk--------~~kAa~iA~e----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 939 KD--------YFSMVRIKCIQGK--------TDKAARIAEE----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hh--------hhhheeeEeeccC--------chHHHHHHHh----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 53 5666777777777 7777776655 4456677888888888888888888887663
No 237
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.88 E-value=0.0062 Score=54.34 Aligned_cols=180 Identities=15% Similarity=0.070 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcC-
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQK--------------LVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAG- 197 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g- 197 (355)
..-.+++++..-+-.++.|+..+..+...++ -+++..+|++++...- .+...++.++..-...-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3446777777777778888877766666665 6788888888876522 23334444443222222
Q ss_pred --CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchH-HHHHHHHHH-HHHcc
Q 040440 198 --ESEAAIKGFEEILRKDPLRV-EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLR-DFKLLIAQI-KVMES 272 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~-~~~~~la~~-~~~~g 272 (355)
.++..-..+++++.+...+. -+|..+.....+... .+.|..+|.+....+... .++..-|.+ |.-.+
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK 415 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC
Confidence 36666777888877644333 334444444444444 566666666643333332 344433433 34579
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+.+-|.++|+-.++..++.+..-+.....+...|+-..|..+|++++..
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999999999999998888899999999999999999999886
No 238
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.84 E-value=0.00087 Score=50.75 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
.|......|+.+.++..+++++.+...+.-.-... ..........+.+ ....+...++..+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------------~~~~~~~~l~~~~ 72 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------------LYLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 34555667888899999999988754321110000 0000000000111 1133455678888
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
...|++++|+..+++++..+|.+..+|..+..+|...|+..+|+..|+++..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854
No 239
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.84 E-value=4.1e-05 Score=66.74 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=93.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
-..+...+..++|+.|+..|.++++++|+....+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~ 267 (355)
+.+|+..++. ....|++..+...+..+
T Consensus 88 --------~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 --------FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred --------HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 8888888887 55667777775555444
No 240
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00018 Score=57.32 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=81.5
Q ss_pred hhhccCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 124 SAREDVSYEEKEKEIEQHLA--------ANPNDI----------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
..|..++|.+|...|++++. ..|.++ ..+.+.+.++...|+|-++++....++..+|.+..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34666699999999988863 344443 457788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (355)
++..|.+....-+.++|...|.++++++|.-..+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999865544
No 241
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.83 E-value=0.00041 Score=60.73 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=106.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC--------CHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL-RKDPL--------RVEAYHGL 223 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~--------~~~~~~~l 223 (355)
......|++..+...+....+.+.....+...+.+..+..++..|++.+|.+.+...- ...+. .-..|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 3344455666666666666666666666667777777888888888888877654321 11121 11235677
Q ss_pred HHHHhccCchHHHHHHHHHHHHH-HHHhhccC-----------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAME-RCKKEKKK-----------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~-~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
|-+.++.+. +..+..+|.+|++ .+.++... .....+.++.|..|...|+.-.|.++|.+++...-.+
T Consensus 290 GcIh~~~~~-y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 290 GCIHYQLGC-YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred ceEeeehhh-HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 777777776 6667777777775 44442211 2345678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 040440 292 FRPYLCQGIIYTLL 305 (355)
Q Consensus 292 ~~~~~~l~~~~~~~ 305 (355)
+..|..++.++...
T Consensus 369 PrlWLRlAEcCima 382 (696)
T KOG2471|consen 369 PRLWLRLAECCIMA 382 (696)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988753
No 242
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0063 Score=49.26 Aligned_cols=191 Identities=10% Similarity=0.098 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH-HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS-QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE-AAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~ 207 (355)
.-..|.++-+.++..+|.+..+|...-.++... .+..+-++++.++++.+|++-.+|...-.+....|++. .-++..+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 557788899999999999988888777666654 46788899999999999999999998888888899888 8888999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHH------HHccCHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIK------VMESKHSEALRV 280 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~ 280 (355)
.++..+..+-.+|...-.+....+. ++.-+.+..+ +..+..+..+|...-.+. ...-..+.-+.+
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~--------~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKD--------YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhh--------HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 9999888888888888777776666 5555544444 122222222222111000 111234556777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHhCCCChhH
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTL-LR--KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+.+...|++..+|..|.-++.. .| ...+........+...|...++
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ 260 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPF 260 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChh
Confidence 888889999999999999888876 44 1334444444444333443333
No 243
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.68 E-value=9.6e-05 Score=40.16 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777777777777777777777777663
No 244
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.68 E-value=0.0035 Score=50.94 Aligned_cols=124 Identities=13% Similarity=0.208 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHHHHHcCCCchHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHhccCch
Q 040440 163 QKLVEAVDVIDRLIELEPNEFEW----QLLKAQVQSYAGESEAAIKGFEEILRKD-----PLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~~ 233 (355)
.+.++|+.-|++++++.++..++ +-.+..+++++|+|++-.+.|.+++..- .+..+--.+-..-|....+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666666666655443 3445566666777776666666665431 11111111111122223333
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+.....|+..++.++..++..-.......+|.+|+..|+|.+-.++++++-.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 44555567777777766555555555566677777777777777776666554
No 245
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.67 E-value=0.0052 Score=53.84 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=102.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------C------------CCchH---HHHHHH
Q 040440 140 QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------------E------------PNEFE---WQLLKA 190 (355)
Q Consensus 140 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~------------~~~~~---~~~~la 190 (355)
..+..+|-+++++..++.++..+|+.+.|.+++++++-. + +.|.. +.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999999998532 1 11111 344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-KSDLRDFKLLIAQIK 268 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~-~~~~~~~~~~la~~~ 268 (355)
....+.|-+..|.++.+-.+.++|. |+-........|.-..+.++-.+..++....... .. ....+.+.+..+.++
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~--~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY--RNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh--hhhhhhCccHHHHHHHHH
Confidence 7788999999999999999999998 7776666666655444434333333332222100 00 011335667777777
Q ss_pred HHccCH---------------HHHHHHHHHHHHhCC
Q 040440 269 VMESKH---------------SEALRVYEELVKEEP 289 (355)
Q Consensus 269 ~~~g~~---------------~~A~~~~~~~l~~~~ 289 (355)
...++- ++|...+.+++...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 778777 899999999988766
No 246
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.67 E-value=0.029 Score=48.00 Aligned_cols=188 Identities=19% Similarity=0.095 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
.++..+...+..+-.. .+......++.+|.. ..+..+|+.+|+.+. ....+.+.+.+|.+|.. ..++.
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHH
Confidence 4778888888887662 234677788887774 356888999999655 45567788889998877 44999
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHH
Q 040440 201 AAIKGFEEILRKDPLR-VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHS 275 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 275 (355)
+|..+|+++.+..-.. ....+.++.+|..... .........+|+..+.+.... ........+|.+|.. ..+++
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~-~~~~~~~~~~A~~~~~~aa~~-~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQ-ALAVAYDDKKALYLYRKAAEL-GNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChh-hhcccHHHHhHHHHHHHHHHh-cCHHHHHHHHHHHHcCCCCCcCHH
Confidence 9999999999875433 3447788888876531 111222234666666662211 156778888888865 35899
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTLLR---------------KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~l~~~p~~ 325 (355)
+|..+|.++-+... ....+.++ ++...| +...|...+.......+..
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 99999999988765 77888888 666666 7788888888887776543
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.66 E-value=0.008 Score=45.45 Aligned_cols=65 Identities=25% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+...++..+...|++++|+..+++++..+|.+...+..+..+|...|+ ...|...|++....+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHH
Confidence 345566777888999999999999999999999999999999999888 66666666666666554
No 248
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0037 Score=52.30 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.-+..-|+-|++..+|..|+..|.+.+...-.++ ..|.+.+.+....|+|..|+....+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 44566778899999999999999999998744333 35888999999999999999999999999999999999999
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.|+..... +..|+..++.
T Consensus 161 kc~~eLe~--------~~~a~nw~ee 178 (390)
T KOG0551|consen 161 KCLLELER--------FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHH--------HHHHHHHHhh
Confidence 99888877 6666666665
No 249
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.58 E-value=2.8e-05 Score=64.76 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=87.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
..+++..++++.|++.|..+++.+|.....+...+.++++.++...|+.-+..+++++|+...-|-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33567778999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 040440 202 AIKGFEEILRKDPL 215 (355)
Q Consensus 202 A~~~~~~~~~~~p~ 215 (355)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999998643
No 250
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.007 Score=49.01 Aligned_cols=185 Identities=13% Similarity=0.118 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~ 207 (355)
.+|.++..+|+.++..+. .-..|+.+-+.++.++|.+-.+|...-.++..++ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E-----------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNE-----------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccc-----------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 367777777776665544 4456777777889999988887777666665554 6788899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH-HHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE-KAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~-~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
++++-+|.+-.+|...-.+....|+ .. .-+++.+. ...+..+..+|...-.+...-+.++.-+.+..+++
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d--------~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGD--------PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcC--------cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999877777766666 33 44555555 45566777788888888888899999999999999
Q ss_pred HhCCCChHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 286 KEEPRDFRPYLCQGIIYTL-LR-----KKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|+|.....++.+++..
T Consensus 175 e~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 175 EEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 9887776676554322222 11 23445667778888899998877777776653
No 251
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.47 E-value=0.035 Score=49.78 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHH
Q 040440 131 YEEKEKEIEQHLAAN-PNDIEALQTLMEVRIKS---QKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~ 205 (355)
-+++..+|+++++.. ..+...++.++..--.. ++++..-+.+++++.....+.. +|..+-..-.+..-...|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 467888888887733 22344444444433222 2377778888888876443333 566666666677788899999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMA-YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
|.++-+..-....++..-+.+ |...++ ..-|..+|+- +...++.+.+-......+...++-..|...|++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD--------~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKD--------KETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCC--------hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 999987543333444333322 333445 6788888887 677888888888889999999999999999999
Q ss_pred HHHh--CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 284 LVKE--EPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 284 ~l~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
++.. .++ ...+|..+......-|+...++++=++-....|
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9987 332 457888888888899999988888887776666
No 252
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.47 E-value=0.00028 Score=38.26 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+|+.+|.+|...|++++|++.|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
No 253
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.078 Score=47.67 Aligned_cols=194 Identities=15% Similarity=0.019 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+...+.+....+..|.++-.....+..+...|+.+.|+..++..+. +.-. -.++.+|.++..+.+|..|-..
T Consensus 248 d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 248 DGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred cHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 335556666667778888888888888888888888888888888775 2211 1366778888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHH-HHHhccCch-------HHHHH---------------------------------------
Q 040440 206 FEEILRKDPLRVEAYHGLV-MAYDGSDKK-------LNEVE--------------------------------------- 238 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~-~~~~~~~~~-------~~~a~--------------------------------------- 238 (355)
+........-..-.|..++ -|+...++. .+.+.
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 8887776544444444443 222221111 11110
Q ss_pred ----------------------HHHHHHHHHHHhh-ccCCchH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC-
Q 040440 239 ----------------------KRIEKAMERCKKE-KKKSDLR-DFKLLIAQIKVMESKHSEALRVYEELVKEE---PR- 290 (355)
Q Consensus 239 ----------------------~~~~~Al~~~~~~-~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~- 290 (355)
....+....++.. ..+.++. -.++.+|.++..+|+-..|..+|...++.. ..
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d 485 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED 485 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence 0001111111110 1122222 235667888999999999999999887432 11
Q ss_pred ---ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 040440 291 ---DFRPYLCQGIIYTLLRK-KDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 ---~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~ 325 (355)
-+.+++.+|..|..+|. ..++..++.++.....++
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 35688999999999998 999999999998877543
No 254
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0022 Score=53.58 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
-+-.-|.-|++..+|..|+..|.+.++..-.+++.. ..+|.+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dln-------------------------------------avLY~NR 125 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLN-------------------------------------AVLYTNR 125 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHH-------------------------------------HHHHhhH
Confidence 345567778888889999999888888754433321 1223333
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|.+....|+|..|+.-+.+++..+|.+..+++.=+.++..+.++.+|..+++..+.++
T Consensus 126 AAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4444445556666666666666666666666666666666666555555555554443
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.43 E-value=0.046 Score=51.17 Aligned_cols=177 Identities=16% Similarity=0.054 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcC---
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKS-----QKLVEAVDVIDRLIEL-----EPNEFEWQLLKAQVQSYAG--- 197 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g--- 197 (355)
..++...++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+... .-..+.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777776553 4677888888888754 7899999999999771 1124457788999888743
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH---
Q 040440 198 --ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD--KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM--- 270 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~--- 270 (355)
+++.|+.+|.++-.. +++.+.+.+|.++.... ++ +.+|.+++..... .......+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d-------~~~A~~yy~~Aa~-~G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERD-------YRRAFEYYSLAAK-AGHILAIYRLALCYELGLG 375 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCcccc-------HHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCC
Confidence 778899999998876 45677788898887766 33 4455555444221 2345667777887764
Q ss_pred -ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 040440 271 -ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 271 -~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~ 321 (355)
..+.+.|..+++++.+.. .+.+...++..+..- ++++.+.-.+......
T Consensus 376 v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 358899999999998876 444455555544433 6666666655554443
No 256
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.42 E-value=0.025 Score=49.02 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGE------------SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
.-|++.++.+|.+...|..+....-..-. .+.-+.+|++|++.+|++...+..+..+.....+ .+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~-~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD-SEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHH
Confidence 45778888999999999998865544422 4567889999999999999998888888877765 3333
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCC----C--------------ChHHHH
Q 040440 238 EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM---ESKHSEALRVYEELVKEEP----R--------------DFRPYL 296 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~----~--------------~~~~~~ 296 (355)
...+++++. .++....+|..+...... .-.++.....|.+++..-. . -..++.
T Consensus 85 ~~~we~~l~------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLF------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHH------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 334444443 367777776665544433 3357788888888775311 0 124566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+.....+.|..+.|...++-.++++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 77788889999999999999999975
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.42 E-value=0.074 Score=50.67 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=124.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPN--D-------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQL 187 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 187 (355)
....+...++++|..++.++-..-+. . .......|.+....|+.++|+++.+.++..-|.+. ..+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 33445556899999998888664333 1 23444567788899999999999999998866543 3577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHH--HHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPL----RVEAY--HGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRD 259 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~--~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~ 259 (355)
.+|.+..-.|++++|+.+..++.+.... ...+| ...+.++..+|+ .+...-+++...... ....+....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq---~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ---VARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhhcccchh
Confidence 7889999999999999999988887322 22333 334556666663 222222333333222 222333222
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCC--hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKE----EPRD--FR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.....+.++...-+++.+..-....++. .|.. .. .++.++.++...|+.++|...+.+...+.-+
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2223333333333356555555555443 2222 22 2347899999999999999999998776433
No 258
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.39 E-value=0.054 Score=44.31 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCchH-HHHHHHHHHHHcCCH
Q 040440 130 SYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL-----EPNEFE-WQLLKAQVQSYAGES 199 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~la~~~~~~g~~ 199 (355)
+.++|+.-|+++++..++.. .++..+..++++.|+|++-.+.|.+++.. ..+..+ ....+-..-....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 88999999999999988764 46778888999999999999999887653 111111 111111111122333
Q ss_pred HHHHHHHHHHHhh--CCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHh------hccCCchHHHHHHHHHH
Q 040440 200 EAAIKGFEEILRK--DPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKK------EKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 200 ~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~------~~~~~~~~~~~~~la~~ 267 (355)
+--.+.|+..+.. +..+...| ..+|.+|...++ +....+...+--..++. .+......+++..-.++
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e-~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE-YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH-HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 3334444444432 22333444 367888888877 33322222222222222 11122334556666788
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC--ChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 268 KVMESKHSEALRVYEELVKEEPR--DFRP----YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~--~~~~----~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|..+++..+-...|++++..... .+.+ .-.=|..+.+.|+|++|-..|-++.+..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 88999999999999999876432 2222 2233566788899999988888887754
No 259
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.37 E-value=0.016 Score=52.36 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
...+|++.++-|..-.|-..+.+++.+....+-.++.+|.++..+.+.+.|++.|+++++++|++.....-+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 45567777777777777777777777776677788899999999999999999999999999998766544433
No 260
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.34 E-value=0.00048 Score=36.97 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+++.+|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455666666666666666666666665554
No 261
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.33 E-value=0.029 Score=42.30 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+..+..+-...++.+++..++..+--+.|+.+..-..-|.++...|++.+|+.+++.+.+..|..+.+.-.++.|+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34455555667778888888888887788888888888888888888888888888888777777777777777777777
Q ss_pred Cc
Q 040440 231 DK 232 (355)
Q Consensus 231 ~~ 232 (355)
++
T Consensus 92 ~D 93 (160)
T PF09613_consen 92 GD 93 (160)
T ss_pred CC
Confidence 66
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.32 E-value=0.088 Score=47.93 Aligned_cols=176 Identities=14% Similarity=0.004 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++++...-.|++++--.....+.|...+......|+.+-|-..+.++.+. .+..+.....-+......|++..|...++
T Consensus 311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQ 390 (577)
T ss_pred ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHH
Confidence 38888999999998877788899999999999999999999999988776 56667788888888889999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHH-HHHccCHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKLLIAQI-KVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l 285 (355)
++....|+...+-...+....+.|. .+.+.. +.+.+....... ........+...++. +.-.++.+.|...+.+++
T Consensus 391 ~i~~e~pg~v~~~l~~~~~e~r~~~-~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 391 RIESEYPGLVEVVLRKINWERRKGN-LEDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HHHhhCCchhhhHHHHHhHHHHhcc-hhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 9999889888887777777777776 222211 222222222222 222223345555554 345689999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcC
Q 040440 286 KEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g 306 (355)
+..|.+...|..+..+....+
T Consensus 469 ~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCCccHHHHHHHHHHHHhCC
Confidence 999999988888888777665
No 263
>PRK10941 hypothetical protein; Provisional
Probab=97.32 E-value=0.004 Score=51.85 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....++-.+|...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3466677889999999999999999999999999999999999999999999999999999999988654
No 264
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.32 E-value=0.0049 Score=42.02 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~ 200 (355)
+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 567788888999999999999999999999999999999999887644 445555666666666543
No 265
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.31 E-value=0.0047 Score=54.37 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=105.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc--cCCc--------hH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK--KKSD--------LR 258 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~--~~~~--------~~ 258 (355)
....+.+..+...+..-.+.++....+........++.++..|+ +.+|.+.+.... ..+. ..
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------HPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------hHHHHHHHHhcccccccCccccchhhhh
Confidence 33455666667777777777777777788888888899988998 999999887722 2221 23
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKE---------EP---------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+|.++|-+++..|.|.-+..+|.++++. .| ....+.++.|..|...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 34788999999999999999999999951 11 2457889999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHH
Q 040440 321 LVPRNHPYREYFVDNM 336 (355)
Q Consensus 321 ~~p~~~~~~~~~~~~~ 336 (355)
..-.++..+..+....
T Consensus 364 vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECC 379 (696)
T ss_pred HHhcCcHHHHHHHHHH
Confidence 8766655544444333
No 266
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.30 E-value=0.0016 Score=39.19 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+..+.++..+.++|+|++|..+.+.+++..|+|.....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356778888888888888888888888888888665444
No 267
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.29 E-value=0.00061 Score=36.53 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
++.+|.++...|++++|++.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555554443
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.056 Score=42.00 Aligned_cols=166 Identities=17% Similarity=0.095 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCCCHHHHH------HHHHHHHHccCH---HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQ------TLMEVRIKSQKL---VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~------~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
++.+..+.+.+..-..+-. ..|.-|++..+. .+|-..|+++++.- ..+.. +....
T Consensus 11 l~~ik~wwkeNGk~li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~ 74 (207)
T COG2976 11 LEAIKDWWKENGKALIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAA 74 (207)
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHH
Confidence 4455555665554333222 233344444333 35666666655321 12222 44555
Q ss_pred HHHHHhhCCCCHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch----HHHHHHHHHHHHHccCHHHHH
Q 040440 206 FEEILRKDPLRVEA---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL----RDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 206 ~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~ 278 (355)
.++....++....+ -..++..+...++ +++|+..++.....+.+ ..+...++++...+|.+|+|+
T Consensus 75 ~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 75 AEKFVQANGKTIYAVLAALELAKAEVEANN--------LDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56666656554433 3456777778888 88888877763322332 334778899999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++......- ........|+++...|+.++|+..|++++...++.
T Consensus 147 ~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99987533211 22335568999999999999999999999987543
No 269
>PRK10941 hypothetical protein; Provisional
Probab=97.21 E-value=0.0067 Score=50.55 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.+.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|+..++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4556777899999999999999999999999999999999999999999999999999999999998875544433
No 270
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.046 Score=48.59 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE-SEAAIKGFEEIL 210 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~ 210 (355)
..-..+|+.++...+.|+..|........+.+.+.+--.+|.+++..+|++++.|..-+.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3457789999999999999999999888888889999999999999999999999998876666665 999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q 040440 211 RKDPLRVEAYHGLVMA 226 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~ 226 (355)
+.+|+.+..|...-..
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999887654433
No 271
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.17 E-value=0.00088 Score=36.83 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
|..||.+|...|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
No 272
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.17 E-value=0.057 Score=47.42 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
+.---++++++...+-.++.|+-........+|-+.|+...++++...|. ..+.++.+|...++-++...+|+++.+
T Consensus 285 qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 285 QRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 34445678888888888999999999999999999999999999877665 666778877777777777777776654
Q ss_pred h---------------CCCCH----HHHH------HHHHH-----HhccCchHHHHHHHHHHHHHHHHhhccCC-chHHH
Q 040440 212 K---------------DPLRV----EAYH------GLVMA-----YDGSDKKLNEVEKRIEKAMERCKKEKKKS-DLRDF 260 (355)
Q Consensus 212 ~---------------~p~~~----~~~~------~l~~~-----~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-~~~~~ 260 (355)
. ..+++ +..+ .++.| ..+... .+.|..+|.+..+.+ ....+
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G--------l~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG--------LEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhccCCCCcce
Confidence 2 00111 1111 11111 111111 455666666643333 22333
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 261 KLLIAQI-KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 261 ~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
+..-|.+ |...|++.-|..+|+-.+...|+++...+..-..+...++-+.|..+|++++..-.
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 3333333 44679999999999999999998877777777778888999999999998776543
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.12 E-value=0.047 Score=48.03 Aligned_cols=168 Identities=20% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC--HHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLR--VEA 219 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~--~~~ 219 (355)
.....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..+++.+... ... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456677778888888888888888888776542 145567777888888888888888887777621 111 000
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCChH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME------SKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
...+....... .+.................++..+|...... ++.++++..|+++++.+|....
T Consensus 224 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 224 NAELKSGLLES----------LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHHhhccccc----------cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 00010000000 0000000000000112234556666666666 8899999999999999999999
Q ss_pred HHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 040440 294 PYLCQGIIYTLLRKK-----------------DEAEKQFEKFRRLVPR 324 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~-----------------~~A~~~~~~~l~~~p~ 324 (355)
+|+.+|..+...=+. ..|+..|-+++...++
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999988877654221 3466677777777665
No 274
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.10 E-value=0.0076 Score=48.56 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 256 DLRDFKLLIAQIKVMESKHS-------EALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~-------~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
....++..+|++|...|+.+ +|++.|+++++... +...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34556778899998888855 45555555554332 224678889999999999999999999998764
Q ss_pred C
Q 040440 323 P 323 (355)
Q Consensus 323 p 323 (355)
.
T Consensus 196 ~ 196 (214)
T PF09986_consen 196 K 196 (214)
T ss_pred C
Confidence 3
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.09 E-value=0.0011 Score=36.42 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
+..+|.+|...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
No 276
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.07 E-value=0.0005 Score=57.56 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=68.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+.-.+..|++++|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-|-..+......|+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33455778999999999999999999999999999999999999999999999999999988887777777777777
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.04 E-value=0.16 Score=43.03 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=97.8
Q ss_pred HHccCHHHHHHHHHHHHHcC----CCch----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------
Q 040440 160 IKSQKLVEAVDVIDRLIELE----PNEF----EWQLLKAQVQSYAG-ESEAAIKGFEEILRK----DP---LR------- 216 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~----~~~~----~~~~~la~~~~~~g-~~~~A~~~~~~~~~~----~p---~~------- 216 (355)
++.|+++.|..++.|+-... |+.. ..+++.|......+ ++++|..+++++.+. .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788888888888875543 3222 24667777777788 888888888888877 21 11
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCh
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RDF 292 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~ 292 (355)
..++..++.+|...+. . ...++|..+++. ....++.+.++...-.+..+.++.+.+.+.+.+++...+ .+.
T Consensus 84 ~~iL~~La~~~l~~~~-~----~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDT-Y----ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCC-h----HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 2345677888877765 2 235666666666 344555566665555666668999999999999988654 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
........-+.. .....|...+...+..
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHH
Confidence 222222222222 2345666777666543
No 278
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.03 E-value=0.1 Score=45.80 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=102.2
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCCHHH---HHHHHHH
Q 040440 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------------------------PLRVEA---YHGLVMA 226 (355)
Q Consensus 176 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------------p~~~~~---~~~l~~~ 226 (355)
++.+|.+.+.+..++.++..+|+.+.|.+.+++++-.. +.|... .+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45689999999999999999999999999999886321 122222 3344555
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDF-KLLIAQIKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQ 298 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l 298 (355)
..+.|- +..|+++++- ...+|. ++-. ++.+-....+.++|+--++.++........ -+..-+..
T Consensus 113 L~~RG~--------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 113 LGRRGC--------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHhcCc--------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 666666 9999999988 444554 4444 444444556778888888888876652111 23566778
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 040440 299 GIIYTLLRKK---------------DEAEKQFEKFRRLVPR 324 (355)
Q Consensus 299 ~~~~~~~g~~---------------~~A~~~~~~~l~~~p~ 324 (355)
+.++...++. ++|...+++++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888888 8999999999998885
No 279
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.23 Score=44.26 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcC---CC---CH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCC-------chHH
Q 040440 130 SYEEKEKEIEQHLAAN---PN---DI--------EALQTLMEVRIKSQKLVEAVDVIDRLIEL---EPN-------EFEW 185 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~---p~---~~--------~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~-------~~~~ 185 (355)
-+++|.++-++++... +. .. ..+..++.+-.-.|++.+|++....+.+. .|. ....
T Consensus 290 y~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~i 369 (629)
T KOG2300|consen 290 YFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHH
Confidence 4666777666666421 11 11 23445666777889999999988887664 333 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC-----ch
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPL-RV--EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS-----DL 257 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~--~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-----~~ 257 (355)
...+|......|.++.|...|..+.+.-.. +. ....+++..|.+.++ ...+.++++.+...+..+ ..
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-----~ed~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD-----AEDLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc-----HHHHHHHHHhcCCCCCCcchHHHHH
Confidence 777888888889999999999999987432 22 234578888988877 112344444433222222 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPR-D-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..+++..|...+.++++.+|...+.+.++.... + .-.+..++.+....|+..++.+...-++++..
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 345777788889999999999999999987531 1 22456678889999999999999888877653
No 280
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.99 E-value=0.28 Score=44.85 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHc-----CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 130 SYEEKEKEIEQHLAA-----NP---NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
...+.+-.++..+.. .| .+...|......-...|+++...-.|++++--.......|...+......|+.+-
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 344444555555442 22 3456677777888899999999999999998777888899999998889999999
Q ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 202 AIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 202 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
|...+..+.+.. +..+.....-+......|+ +..|..+++. ....|....+-...+.....+|+.+.+..
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n--------~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEARFEESNGN--------FDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc--------HHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999988888875 5566666666666667777 8888888888 34447777777777788888999998884
Q ss_pred ---HHHHHHHhCCCC---hHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 280 ---VYEELVKEEPRD---FRPYLCQGI-IYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 280 ---~~~~~l~~~~~~---~~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+.....-..+. ...+...+. .+.-.++.+.|...+.++++..|++...
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 333322211111 122333333 3445688999999999999999987443
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.94 E-value=0.0059 Score=36.70 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
.++.+|..+++.|+|++|..+.+.+++.+|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555555443
No 282
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.93 E-value=0.26 Score=47.23 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=116.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CchH--HHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEFE--WQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~--~~~~la~~~~ 194 (355)
..++++++|++..+.++..-|.+ ..++..+|.+..-.|++++|+.+...+.+... ..-. +....+.++.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34459999999999999877664 56778899999999999999999998877622 2222 2334467778
Q ss_pred HcCC--HHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH-HHHHHHHH
Q 040440 195 YAGE--SEAAIKGFEEILRK----DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD-FKLLIAQI 267 (355)
Q Consensus 195 ~~g~--~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~-~~~~la~~ 267 (355)
.+|+ +.+....|...-.. .|.........+.++...-+ .+.+......++++.......+.... ..+.++.+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 8883 33333444333322 23322233333333332222 33333334444544444333333333 34589999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC-hH-HH-----HHHHHHHHHcCCHHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRD-FR-PY-----LCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~-~~-~~-----~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
++..|++++|...+.++...-... .. .| ..........|+.++|.....+
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999999999999987653322 11 11 1122233467888888888777
No 283
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.27 Score=43.77 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=115.5
Q ss_pred ccCCHHHHHHHHHHHHH---cCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-chH--HHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLA---ANPN-------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFE--WQLLKAQVQ 193 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~---~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~la~~~ 193 (355)
-.+++.+|++....+.+ ..|. .+.....+|......|.++.|...|..+.+.... +.. ...++|..|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 34588888887777765 4555 2456677888888889999999999999876432 222 456788999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-------hccCCc
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR----------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-------EKKKSD 256 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-------~~~~~~ 256 (355)
.+.|+-+.-.+.++. +.|.+ ..+++..|...+..++ +.+|...+.+ .....-
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~--------lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQND--------LNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhcchhhHHHH
Confidence 998876554444433 34442 2345666666777777 5555555555 111222
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCh---HHHHHHHHHHHHcCC--HHHHHHHHH
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RDF---RPYLCQGIIYTLLRK--KDEAEKQFE 316 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~---~~~~~l~~~~~~~g~--~~~A~~~~~ 316 (355)
..-.+..++.+....|+..++.+...-+++... +-+ +..-.+-.+|...|+ .++..+.+.
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 233467788899999999999999888876543 322 222345567777777 444444444
No 284
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.87 E-value=0.043 Score=39.79 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 255 SDLRDFKLLIAQIKVMES---KHSEALRVYEELVK-EEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
.......+++++++.... +..+.+.+++..++ -+|. ..+..+.++..+++.|+|++++.+.+..++..|+|.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344566788888888654 46678999999996 4443 456788999999999999999999999999999997765
Q ss_pred HHHHHH
Q 040440 330 EYFVDN 335 (355)
Q Consensus 330 ~~~~~~ 335 (355)
.+-..+
T Consensus 109 ~Lk~~i 114 (149)
T KOG3364|consen 109 ELKETI 114 (149)
T ss_pred HHHHHH
Confidence 544333
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.87 E-value=0.022 Score=44.52 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....|++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555443221 122344444555555555555555554443
No 286
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.86 E-value=0.11 Score=38.65 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
....-...++.+++..+++.+--+.|+....-..-|.++...|+|.+|+.++++..+..+..+...-.++.|+...|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333444578888888888888778888888888888888888888888888888887776667666677777777766
No 287
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.85 E-value=0.024 Score=52.66 Aligned_cols=146 Identities=19% Similarity=0.132 Sum_probs=72.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHH------HHc----CCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRL------IEL----EPNEF-EWQLLKAQVQSYAGESEAAIKGFEEILRKD--------- 213 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~------~~~----~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------- 213 (355)
..|.+|-+..++++|+++|++. +++ .|... ..--..|.-+.+.|+++.|+..|-++-...
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 3455555666777788777653 322 23221 122234566677788888877765432110
Q ss_pred ---C------------CC-HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 214 ---P------------LR-VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 214 ---p------------~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
| +. ...|-.++..|...|+ |+.|.+++.+.... ..-..+|.+.|+|++|
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~d--------fe~ae~lf~e~~~~-------~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGD--------FEIAEELFTEADLF-------KDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchh--------HHHHHHHHHhcchh-------HHHHHHHhccccHHHH
Confidence 0 00 0012223333444444 44444444432111 1123445555566555
Q ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 278 LRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 278 ~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
.+.-+++. .|. ....|...+.-+-+.|++.+|.+.|-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 55555542 222 23455666677778888888887763
No 288
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.84 E-value=0.027 Score=52.44 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=107.1
Q ss_pred hccC-CHHHHHHHHHHH------HH----cCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHH------Hc---------
Q 040440 126 REDV-SYEEKEKEIEQH------LA----ANPNDIE-ALQTLMEVRIKSQKLVEAVDVIDRLI------EL--------- 178 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~------l~----~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~------~~--------- 178 (355)
|++. ++++|+++|++. ++ ..|..+. .-..-|.-+.+.|+++.|+..|-++- +.
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Confidence 5555 777787777653 22 1333222 12234555556677777766654421 10
Q ss_pred ---------CCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 179 ---------EPN-EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 179 ---------~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.+ ....|-.++.-|...|+|+.|.++|.++-. ...-...|.+.|+ ++.|.++.
T Consensus 751 ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~k--------w~da~kla 814 (1636)
T KOG3616|consen 751 AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGK--------WEDAFKLA 814 (1636)
T ss_pred hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhcccc--------HHHHHHHH
Confidence 011 111355677888889999999988876532 2223556777888 88888888
Q ss_pred HhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 249 KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 249 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++..........+...+.-+-+.|+|.+|.+.|-.. ..|+ .-...|-+.|.+++.+...++.
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHHh
Confidence 876666666677888888888999999999888543 1232 1245778888888887776653
No 289
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.14 Score=49.68 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+.+.+|..+|.+..+.|...+|++-|-++ +++..|.....+..+.|.|++-+.++.-+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 44667778888888888888888777653 45666777777777788888877777666554
No 290
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.83 E-value=0.016 Score=39.43 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhccCc
Q 040440 168 AVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR--VEAYHGLVMAYDGSDK 232 (355)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~ 232 (355)
.+..+++.++.+|++..+.+.++..+...|++++|++.+-++++.+++. ..+...+..++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567788899999999999999999999999999999999999998754 4555555555555544
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.83 E-value=0.018 Score=43.40 Aligned_cols=85 Identities=15% Similarity=0.015 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+.+++..+++.+--..|+.++.-..-|..++..|+|.+|+.+++.+.+..|..+..--.++.|+...|+.+= ..+-++
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~e 102 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADE 102 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 3778889999988889999999999999999999999999999999999899998888899999998888652 233445
Q ss_pred HHhhCC
Q 040440 209 ILRKDP 214 (355)
Q Consensus 209 ~~~~~p 214 (355)
+++..+
T Consensus 103 vle~~~ 108 (160)
T PF09613_consen 103 VLESGA 108 (160)
T ss_pred HHhcCC
Confidence 555443
No 292
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.15 Score=38.89 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=65.4
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH--HHHHHHHHHHhccCc
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RV--EAYHGLVMAYDGSDK 232 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~--~~~~~l~~~~~~~~~ 232 (355)
+.+.+..++|+..|..+-+..-.. .-+.+..+.+..+.|+-.+|+..|.++-.-.+- -. .+...-+.++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445677788888887766543322 235666777888888888888888887664321 11 122233334444444
Q ss_pred hHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
|+......+. ....+-.....-.||..-++.|++.+|...|.++..
T Consensus 148 --------y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 --------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred --------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444444 222333333444455555555555555555555443
No 293
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.79 E-value=0.024 Score=39.70 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=51.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAGE-----------SEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+..++..|++-+|+++.+..+...+++.. .+..-|.++..+.. .-.+++.|.++..+.|.....++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 44566666677777776666666555442 33344444433321 23567778888888888877777
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.+|.-+.... +|++++...++
T Consensus 83 ~la~~l~s~~--------~Ykk~v~kak~ 103 (111)
T PF04781_consen 83 ELASQLGSVK--------YYKKAVKKAKR 103 (111)
T ss_pred HHHHHhhhHH--------HHHHHHHHHHH
Confidence 7765543332 26666665555
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.79 E-value=0.011 Score=53.36 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++...|+.++..++...|.. .....+++.+.++-|-..+|-.++.+++.+....+-.++.+|..+..+.+.++|++.|+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 38899999999999988874 34578899999999999999999999999988788889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHh
Q 040440 208 EILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~ 228 (355)
++++.+|+++..-..+-.+.+
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhcCCCChhhHHHHHHHHH
Confidence 999999999988776666555
No 295
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.27 Score=44.74 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------
Q 040440 130 SYEEKEKEIEQHLAA------------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------- 178 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------- 178 (355)
.|+++...|.-+... .|-+++.+..++.+...+|+.+.|....++++=.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 577787777777553 4566889999999999999999888888877532
Q ss_pred --CCCchHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 179 --EPNEFEWQ---LLKAQVQSYAGESEAAIKGFEEILRKDPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 179 --~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|.+...| +..-..+.+.|-+..|.++++-++.++|. ++.....+..+|.-..+.+.-.+...++. +...++.
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~-e~~n~l~ 411 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP-ENMNKLS 411 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH-HhhccHh
Confidence 22222222 22234456789999999999999999998 88888888877765554333333322222 1111111
Q ss_pred cCCchHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESK---HSEALRVYEELVKEEP 289 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~ 289 (355)
.. .+..+-..+|.+|..... -+.|...+.+++...|
T Consensus 412 ~~-PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QL-PNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hc-CCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 11 223445667777777665 6788889999988776
No 296
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.74 E-value=0.035 Score=49.30 Aligned_cols=81 Identities=9% Similarity=0.090 Sum_probs=70.5
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChhHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK-KDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
...+.+..+|........+.+.+.+--.+|.+++..+|++++.|..-+.-.+..+. .+.|...|.+++..+|+.+....
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 44566888999988888888889999999999999999999999999988877776 99999999999999999876654
Q ss_pred HH
Q 040440 331 YF 332 (355)
Q Consensus 331 ~~ 332 (355)
.+
T Consensus 179 ey 180 (568)
T KOG2396|consen 179 EY 180 (568)
T ss_pred HH
Confidence 43
No 297
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.74 E-value=0.1 Score=46.36 Aligned_cols=164 Identities=10% Similarity=-0.051 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHHhccccccccCcccccccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 040440 75 LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQT 154 (355)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 154 (355)
.+++.+--..++.+|.+......+ -...+. .|.++..-.....+..+...+|.-.|-+.+..++...|.+++....
T Consensus 253 HYTP~Fa~~iv~~~fkg~in~~~~--~~d~~~--q~~~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l 328 (831)
T PRK15180 253 HYTDMFGDAIVAAIFKGVINNTNH--HLDEGR--QEKQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL 328 (831)
T ss_pred cCChHHHHHHHHHHHhcccCCccc--cccccc--CcCCcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH
Confidence 455555556666666665432111 111111 1222222232333334566779999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
.+.+....|+|+.+...+..+-..-.....+...+-.....+|++++|....+-++...-+++++...-+...
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa------- 401 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSA------- 401 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccH-------
Confidence 9999999999999999887665543444445555666678899999999988888876666666543222222
Q ss_pred HHHHHHHHHHHHHHHh
Q 040440 235 NEVEKRIEKAMERCKK 250 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~ 250 (355)
.+++++++++..+++
T Consensus 402 -~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 402 -DALQLFDKSYHYWKR 416 (831)
T ss_pred -HHHhHHHHHHHHHHH
Confidence 233447777777776
No 298
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=96.74 E-value=0.4 Score=43.08 Aligned_cols=187 Identities=16% Similarity=0.057 Sum_probs=124.9
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+.+. ++.-...++.+++... ++-.+++.++.+|... ..++-..++++.++.+-++...-..++..|.+ ++...+..
T Consensus 76 f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~ 152 (711)
T COG1747 76 FGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAE 152 (711)
T ss_pred hccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHH
Confidence 4445 6667778888888865 5567789999999988 66788899999999988888888888886665 89999999
Q ss_pred HHHHHHhhC-C--CC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CCchHHH-HHHHHHHHHHccCHH
Q 040440 205 GFEEILRKD-P--LR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KSDLRDF-KLLIAQIKVMESKHS 275 (355)
Q Consensus 205 ~~~~~~~~~-p--~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~~~~~~-~~~la~~~~~~g~~~ 275 (355)
+|.+++... | .+ .++|..+... .|++ .+.-+.+..+... ......+ +..+-.-|....++.
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD-------~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDD-------KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHh---cccc-------HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 999998763 2 12 2334333221 2221 3333333333111 1111222 223334566778999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCC
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTL--------------------LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|++++...++.+..+.++.-++...+.. -.++.+++.-|++.+..+..+
T Consensus 223 eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 223 EAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 99999999999999888887777666655 345556666666665555444
No 299
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.74 E-value=0.0033 Score=32.96 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++..+|.++..+|++++|...+++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566677777777777777777777666653
No 300
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.68 E-value=0.62 Score=44.44 Aligned_cols=185 Identities=10% Similarity=0.070 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCC--chH----HHHHHHHHHHHcCCHH
Q 040440 132 EEKEKEIEQHLAANPN----DIEALQTLMEVRI-KSQKLVEAVDVIDRLIELEPN--EFE----WQLLKAQVQSYAGESE 200 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~--~~~----~~~~la~~~~~~g~~~ 200 (355)
.-|+++++-+++..+- ...++..+|.+++ ...+++.|..++++++.+... ..+ ..+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4578888888852221 4567888999888 789999999999999877533 222 3556788888888777
Q ss_pred HHHHHHHHHHhhCCC----CHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCH
Q 040440 201 AAIKGFEEILRKDPL----RVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKH 274 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~----~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 274 (355)
|...+++.++.... .....+.+..+ +...++ ...|...+++............-...+....+.+....+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d-~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD-YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999987544 12222233222 222244 33333333333333221111111122233445666677878
Q ss_pred HHHHHHHHHHHHhCC----------CChHHHHHHHH--HHHHcCCHHHHHHHHHHH
Q 040440 275 SEALRVYEELVKEEP----------RDFRPYLCQGI--IYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~----------~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 318 (355)
+++++..+++..... ....+|..+-. ++...|+++.+...+++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888754221 12344444433 445677776776665554
No 301
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.28 Score=40.61 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=90.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPN--------EFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYH 221 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 221 (355)
++.-..+.+++++|+..|.+.+...-. .......++.+|...|++..-.+......+. .|.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344444555666666666655543111 1123455666666666655433333222211 122223333
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE------EPRDFRPY 295 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~ 295 (355)
.+..-+-...+.++..+......+++..+.+..--...+-..++..+++.|+|.+|+......+.. .+.-..++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 333333333333444444455555555443333333445566788899999999999998877642 12335566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
..-..+|....+..++..-+..+..
T Consensus 169 llESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777888888888877777766544
No 302
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.61 E-value=0.0043 Score=49.18 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=55.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....+.++.+.|.+.|.+++...|+....|+.+|....+.|+++.|.+.|++.++++|++...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345667899999999999999999999999999999999999999999999999999987443
No 303
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=96.59 E-value=0.35 Score=40.45 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH-----------
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL----------- 284 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------- 284 (355)
+......++.+....+....+.....++|+...+.......++.++..+|..|.+.|++.+|..+|-..
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~l 127 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVML 127 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHH
Confidence 333344455554444332333445577888887335556678899999999999999999998887321
Q ss_pred -----HHhCCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q 040440 285 -----VKEEPRDFRPYLCQG-IIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 285 -----l~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+-.+.+...+...+ ..|...|+...|...+....+.
T Consensus 128 l~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 128 LEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 123455555555554 4566789999999988877765
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.59 E-value=0.16 Score=47.60 Aligned_cols=151 Identities=18% Similarity=0.071 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHhccCch
Q 040440 164 KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-----GESEAAIKGFEEILRK-----DPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+...|..+++.+... .+..+...+|.+|..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|......
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888754 4566777777776654 5899999999999771 122566788899999885421
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----C
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES---KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL----R 306 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----g 306 (355)
.. . .+++|+.++.+... ..++...+.+|.++.... ++..|.++|..+... .+..+.+.++.+|..- .
T Consensus 305 ~~-~--d~~~A~~~~~~aA~-~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EK-I--DYEKALKLYTKAAE-LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVER 378 (552)
T ss_pred cc-c--cHHHHHHHHHHHHh-cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCC
Confidence 11 0 36677777766222 234566777888887654 678999999998765 5778889999888643 4
Q ss_pred CHHHHHHHHHHHHHhC
Q 040440 307 KKDEAEKQFEKFRRLV 322 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~ 322 (355)
+.+.|..+++++.+..
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 7899999999998887
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.57 E-value=0.093 Score=42.36 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHccCHHHHHHHHHHHHHc----CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 159 RIKSQKLVEAVDVIDRLIEL----EPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+.....+++|++.|.-++-. ..+ ....+..+|++|...|+.+....++++|++.
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~------------------- 147 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF------------------- 147 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-------------------
Confidence 34456778888877766532 111 1234556666666666655544444444431
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
|.+|.+.-......-+...+.+.+|.++.+.|++++|.++|.+++.....
T Consensus 148 ---------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ---------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ---------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 33332221111122344567889999999999999999999999976543
No 306
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.55 E-value=0.42 Score=40.83 Aligned_cols=133 Identities=15% Similarity=0.053 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcC-------
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSYAG------- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g------- 197 (355)
+..+|...|+.+ .+..++.+.+.+|.+|.. ..|..+|..+|+++.+..-.. ......++.+|..-+
T Consensus 92 ~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 688899999844 345678889999999987 559999999999999875443 344777887776541
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
+...|+..|.++-... +..+...++.+|..... +...+++|+..+.+.....+ ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G----v~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG----VPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC----CCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence 3347889998888765 78888889988865311 11126666666666333333 66677777 655555
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.52 E-value=0.013 Score=48.60 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=31.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
+..++.++|..+|+.++...|++++++..+|...-..++.-+|-.+|-+++..+|.+.+++.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33344455555555555555555555555555444444455555555555555554444444433
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.50 E-value=0.15 Score=39.86 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
++.-++-++...........+..+|..|.+.|++++|++.|.++.+.... -.+.++.+..+....|++..+..+..+
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44444444443444455667889999999999999999999998775432 246778888999999999999999998
Q ss_pred HHHhC
Q 040440 318 FRRLV 322 (355)
Q Consensus 318 ~l~~~ 322 (355)
+....
T Consensus 99 a~~~~ 103 (177)
T PF10602_consen 99 AESLI 103 (177)
T ss_pred HHHHH
Confidence 87764
No 309
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.48 E-value=0.24 Score=46.08 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE--------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+.+| ++..|..++......-+++.|...|-+.-....-. ..--...+.+-..-|++++|.+.|-.+-+.+
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 3344 68899999999888888888888877653221100 0001233445555688888888875543321
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHH-------
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEEL------- 284 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------- 284 (355)
.. ..++...|+ +-...++++... .+.....++..+|..+..+..|++|.++|.+.
T Consensus 765 --LA-----ielr~klgD--------wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ 829 (1189)
T KOG2041|consen 765 --LA-----IELRKKLGD--------WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQI 829 (1189)
T ss_pred --hh-----HHHHHhhhh--------HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH
Confidence 10 122223333 333334433311 11122233444444444444444444444322
Q ss_pred ---------------HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 285 ---------------VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 285 ---------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...-|++....-.+|..+...|.-++|.+.|-+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 122355556666677777777777766665543
No 310
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.48 E-value=0.13 Score=36.45 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL----RDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+-.|+..+...|+ +++++..-++|+.+|.+ ...+.+. ..+.+..+..+...|+.++|+..|+.+-+
T Consensus 58 hA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3445555555555 44444444444444444 1112222 22234445556666777777777766544
No 311
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.43 E-value=0.13 Score=36.46 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVK-------EEPRDFRPY----LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.-.+..|+..+..+|+|++++...++++. ++.+....| +..+..+...|+.++|+..|+.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44566778888999999988877777764 444444444 56788899999999999999988654
No 312
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.42 E-value=0.013 Score=48.58 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=55.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 356799999999999999999999999999999999999999999999999999998844
No 313
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.41 E-value=0.026 Score=49.90 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=91.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHc
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~ 271 (355)
.+..|+.-.|-.-...++...|.++......+.+....|+ |+.++..+... ............+-+...+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------HHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 3456788788888888888888888888888888888887 77777766552 11222223344455666778
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|++++|....+.++...-+++++...-+.....+|-++++..++++.+.++|..
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 889999988888887776777776666667777888899999999988887654
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.40 E-value=0.89 Score=43.38 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCC----chHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHhccCch
Q 040440 165 LVEAVDVIDRLIELEPN----EFEWQLLKAQVQS-YAGESEAAIKGFEEILRKDPL--RVE----AYHGLVMAYDGSDKK 233 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~--~~~----~~~~l~~~~~~~~~~ 233 (355)
...|+.+++-+++..+- ...+++.+|.++. ...++++|..++++++.+... ..+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34578888877743221 2336888998877 789999999999999887633 222 244667788777752
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHH----HHHHHHHHHcCC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPY----LCQGIIYTLLRK 307 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~----~~l~~~~~~~g~ 307 (355)
. |....+++++.++..........+.+.....+...+++..|++.++....... .+..+. ...+.+....+.
T Consensus 117 ~--a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A--ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H--HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 2 77888888888776333333333333334444445899999999999987653 444332 334566667787
Q ss_pred HHHHHHHHHHHHH
Q 040440 308 KDEAEKQFEKFRR 320 (355)
Q Consensus 308 ~~~A~~~~~~~l~ 320 (355)
.+++++.++++..
T Consensus 195 ~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 195 PDDVLELLQRAIA 207 (608)
T ss_pred chhHHHHHHHHHH
Confidence 8888888887743
No 315
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.35 E-value=0.54 Score=39.88 Aligned_cols=131 Identities=17% Similarity=0.072 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCH-------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h---ccCCch---
Q 040440 193 QSYAGESEAAIKGFEEILRKD-PLRV-------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E---KKKSDL--- 257 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~---~~~~~~--- 257 (355)
...+|+++.|..++.++-... ..++ ..++..|......+..++.+...+++|.++++. . ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999988765 3333 335566666666662388889999999999866 2 222222
Q ss_pred -HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 258 -RDFKLLIAQIKVMESKHS---EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 258 -~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.+..+.++.+++.+.+.+++.-.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 234677888898877755 566666666677787788776666666668899999999998887543
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.35 E-value=0.0072 Score=31.56 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=14.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEP 180 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 180 (355)
+..+|.++...|++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555555555555555554443
No 317
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=0.64 Score=49.45 Aligned_cols=192 Identities=11% Similarity=0.016 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA-QVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~ 207 (355)
+++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|..++ .+.++.++++.-..+..
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 49999999999999999998877777777777888888888877776655554444444443 34456666655444421
Q ss_pred --------------HHHhhCCCCHHHH-HHHHHHHhccCch-------------HH------------------------
Q 040440 208 --------------EILRKDPLRVEAY-HGLVMAYDGSDKK-------------LN------------------------ 235 (355)
Q Consensus 208 --------------~~~~~~p~~~~~~-~~l~~~~~~~~~~-------------~~------------------------ 235 (355)
..+.....+..+. ..+.......++. ++
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 0111111111110 0000000000000 00
Q ss_pred -----------HH----HHH--HHHHHHHHHh----h----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 236 -----------EV----EKR--IEKAMERCKK----E----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 236 -----------~a----~~~--~~~Al~~~~~----~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
.- ... ..+-+-.+++ . .......+.|...|++..+.|+++.|...+-++.+..
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-- 1700 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-- 1700 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--
Confidence 00 000 1111111111 1 2234556789999999999999999999999887765
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
-+.++...|..+...|+-..|+.++++.++.+
T Consensus 1701 ~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999654
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.25 E-value=0.045 Score=40.58 Aligned_cols=72 Identities=15% Similarity=0.016 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 200 (355)
.+.+++..+++.+--..|+..+.-..-|.+++..|+|++|+.+++...+..+..+...-.++.|+..+||.+
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 477888889988888999999999999999999999999999999999888777878888899998888864
No 319
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.17 E-value=0.088 Score=52.32 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=118.3
Q ss_pred HHHHHHHHHHccCHHHHHH------HHHH-HHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC
Q 040440 152 LQTLMEVRIKSQKLVEAVD------VIDR-LIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------PLR 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~------~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~ 216 (355)
....+......|.+.+|.+ ++.. .-.+.|+....+..++.++...|++++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4445555666677776666 5552 233467777889999999999999999998877765442 344
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----- 289 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----- 289 (355)
...+..++......+. ...+...+..|.....- ....|........++.++...++++.|+++.+.++....
T Consensus 1015 ~~~y~nlal~~f~~~~-~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKN-LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHhhHHHHHHHhccC-ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 4556666666666554 55555556666555443 345677777778888898999999999999999987532
Q ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 290 ---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 290 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.....+..++..+..+|++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888887777766543
No 320
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.17 E-value=0.27 Score=47.83 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
.+..+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|. +++...++
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~-~edLv~yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK-YEDLVKYL 1156 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 34555555555443 45678999999999999999999998665 677888888888888888 44444333
Q ss_pred HHHHHHHHhhccCCchHHH------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDF------------------------KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~------------------------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
.-|.+..++ ..-+..+ ....|.-.+..|.|+.|.-+|. +..-|..
T Consensus 1157 ~MaRkk~~E---~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1157 LMARKKVRE---PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred HHHHHhhcC---ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 333332221 1111111 1122333344445555544443 3345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l 319 (355)
++..+..+|+|+.|.+.-+++-
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888899988888777653
No 321
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.17 E-value=0.16 Score=35.71 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAY---HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
++.-++..|++-+|+++.++++...+++...| ..-|.++..... .. .++ +....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-------------~t-----en~-d~k~~---- 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-------------KT-----ENP-DVKFR---- 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-------------hc-----cCc-hHHHH----
Confidence 45678899999999999999999988776443 333444422211 11 111 11221
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
-.-.++++|.++..+.|.....++.+|.-+-....|+++..-.++++.+
T Consensus 59 -------yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 59 -------YLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -------HHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 1235677888888888877777777777766666777777777777765
No 322
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.13 E-value=0.3 Score=35.57 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-c-c-CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-K-K-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.....++++.++.+..+ ..+.++.+.+++.. . . .....+..+.++..+++.++|+.++.+.+.+++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~-----~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRD-----TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccc-----hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34556677777766554 22367777777772 2 2 334566788889999999999999999999999999887
Q ss_pred HHHHHH
Q 040440 293 RPYLCQ 298 (355)
Q Consensus 293 ~~~~~l 298 (355)
.+....
T Consensus 106 Qa~~Lk 111 (149)
T KOG3364|consen 106 QALELK 111 (149)
T ss_pred HHHHHH
Confidence 765433
No 323
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.10 E-value=0.016 Score=48.12 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL-KAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
.|.+.-...++++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.++..|.++++.+++
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555678899999998888888999999999999999999999998876 556677889999999999999999999
Q ss_pred CHHHHHHHH
Q 040440 216 RVEAYHGLV 224 (355)
Q Consensus 216 ~~~~~~~l~ 224 (355)
++..|....
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 998876443
No 324
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.06 E-value=0.013 Score=46.63 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
|.+.+.+.|.++++..|+....|..+|....+.|+++.|...|++.++++|.+
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 55566666666666666666666666666666666666666666666665554
No 325
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.94 E-value=0.37 Score=43.63 Aligned_cols=131 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
-...++..+.+.|-.+.|+.+.+ +++..+.|+. +.|+.+.|.+..++ .++...|..+|......
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl---~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT--------DPDHRFELAL---QLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHH---HCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHH---hcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHc
Confidence 35556666667777777776542 4455555443 67777777665322 34677788888888888
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 040440 231 DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 310 (355)
|+ ++-|.+.+++.++ +..+..+|.-.|+.+.-.+..+.+..... +...-.++...|+.++
T Consensus 361 g~--------~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 361 GN--------IELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEE 420 (443)
T ss_dssp TB--------HHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHH
T ss_pred CC--------HHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHH
Confidence 88 7777766666322 23345566667776665555555543322 1222334455566666
Q ss_pred HHHHHHH
Q 040440 311 AEKQFEK 317 (355)
Q Consensus 311 A~~~~~~ 317 (355)
..+.+.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 326
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.91 E-value=1.2 Score=39.70 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH-----HHHHHHHHHHHHhh---ccCCchHHH
Q 040440 190 AQVQSYAGE-SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV-----EKRIEKAMERCKKE---KKKSDLRDF 260 (355)
Q Consensus 190 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a-----~~~~~~Al~~~~~~---~~~~~~~~~ 260 (355)
|.-+++.|. -++|++.++.+++..+.+.+.....-.... ..+..| ...+-+-....+.. .....+.+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK---q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK---QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 344566666 677888888888877776654322111110 001111 11111111122221 222233444
Q ss_pred HHHH--HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 261 KLLI--AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 261 ~~~l--a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...+ |..++.+|+|.++.-+-.-+.+..| .+.++..+|.+.....+|++|..++..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4444 4567789999999999999999999 999999999999999999999999875
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.82 E-value=0.026 Score=31.86 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.++.++|.+|...|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888888888888888887653
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.82 E-value=0.13 Score=42.97 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|++..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999999988763
No 329
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.76 E-value=0.23 Score=49.52 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=110.7
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 135 EKEIEQHL-AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 135 ~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.++.+.. ...|+....+..++..+.+.|++++|+.+-.++.-+ .|+....+..++...+..++...|...
T Consensus 958 lnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 958 LNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 33666433 467888999999999999999999999998887543 334455788888888888899999999
Q ss_pred HHHHHhh--------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHH
Q 040440 206 FEEILRK--------DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHS 275 (355)
Q Consensus 206 ~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 275 (355)
+.++... .|........+..++...++ ++.++.+.+.|...-++. ...-.....+..+++.+...+++.
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 8888776 24444455667777666666 777778888888755552 233445556777788888888888
Q ss_pred HHHHHHHHHHHh
Q 040440 276 EALRVYEELVKE 287 (355)
Q Consensus 276 ~A~~~~~~~l~~ 287 (355)
.|+...+.....
T Consensus 1117 ~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1117 NALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhHHHH
Confidence 877777766543
No 330
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.83 Score=39.89 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=86.9
Q ss_pred HHHHccCHHHHHHHHHHHHHc----CCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIEL----EPN-----EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-----PL-RVEAYHG 222 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~~ 222 (355)
.++...++.+|.++-+..+.. +.. ....|+.+..+|...|+...-...+...+... .. .....+.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 334568888888887776543 111 12247777788888888777766666655542 11 2233556
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKE-----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+-..|...+. |+.|-.+..+. ..+.....+.+.+|.+..-+++|..|.+++-+++...|.+
T Consensus 215 LLr~yL~n~l--------ydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKL--------YDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHH--------HHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6677777776 88887777662 2233556778889999999999999999999999998864
No 331
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.66 E-value=1.3 Score=39.49 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK 254 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~ 254 (355)
|..++..|+|.++.-+-.=..++.| .+.++..+|.+.....+ |++|.+++..+..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~--------Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR--------YQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh--------HHHHHHHHHhCCCc
Confidence 3456678888888888777788888 88888888888888877 88888888875443
No 332
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.96 Score=38.55 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc----CC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIEL----EP--NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAY 220 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~ 220 (355)
..++..|...++|.+|+......+.. +. .-.+.+..-...|....+..+|...+..+-... |.-....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35788999999999999988877643 22 223456666788889999999988887776542 2211122
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHH--HHHHHhCCCChHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVY--EELVKEEPRDFRPYLCQ 298 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~~l~~~~~~~~~~~~l 298 (355)
-....++....+++..+..+|-+|.+-|.....+..-...+-.+-.+-+..+..++--..+ +.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 2222233333355888888888888877765554444444444444445556666544443 45666666678888888
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhCCC
Q 040440 299 GIIYTL--LRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 299 ~~~~~~--~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..+.+ +.+|+.|+..|+.-+..+|-
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888764 45788888888887776653
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.61 E-value=1.4 Score=38.59 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.......+...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667789999999999999999999999987652 2567888899999999999999999999887
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.59 E-value=0.035 Score=31.29 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
++..+|.+|...|++++|+.++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555666666666666666666655543
No 335
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.57 E-value=1.6 Score=38.84 Aligned_cols=154 Identities=9% Similarity=0.022 Sum_probs=101.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
.+++-++.+|+++..|+.+...+-.+|.+++-.+.+++...-.|-...+|......-...++|.....+|-+++...- +
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-N 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-c
Confidence 567778899999999999999999999999999999999988888877877666555666889888889999887543 3
Q ss_pred HHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 040440 217 VEAYHGLVMAYDGSDK-KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV---------MESKHSEALRVYEELV 285 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~-~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l 285 (355)
.+.|......-.+.+. ...++....-+|.++.-. ..-.+....+|...+..+. .+.+.|.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 5555433332222221 111222223444444333 2233444455555554432 3445666777888887
Q ss_pred HhCCCC
Q 040440 286 KEEPRD 291 (355)
Q Consensus 286 ~~~~~~ 291 (355)
...-++
T Consensus 189 ~tP~~n 194 (660)
T COG5107 189 QTPMGN 194 (660)
T ss_pred cCcccc
Confidence 654443
No 336
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.57 Score=40.85 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CC--------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKD-PL--------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKL 262 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~-p~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~ 262 (355)
++.+.++.+|.++-+..+... -. ....|+.+..+|...|+ .......+..-+... .+. .......+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~-l~~~rs~l~~~lrtA-tLrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR-LADIRSFLHALLRTA-TLRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHh-hhcCcchhHHHHHH
Confidence 345688999988877665431 11 12346677777777766 222222121111111 122 3334455577
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH--hCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVK--EEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+-+.|...+.|+.|.....+..- ...++ ....+.+|.+..-+++|..|.++|-+++...|++
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 788899999999999988877641 11122 3456789999999999999999999999999974
No 337
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.50 E-value=0.093 Score=36.15 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHccCHHHHHHHHHHHHHhCCC----C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 269 VMESKHSEALRVYEELVKEEPR----D-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.|+|.+|++.+.+.++.... . ..+..+++.++...|++++|+..+++++++....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5679999998888888764332 1 3456788999999999999999999999876444
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.49 E-value=1.1 Score=41.96 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDR 174 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~ 174 (355)
++..+|..+..+..|++|.++|.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444443
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.41 E-value=0.13 Score=42.90 Aligned_cols=64 Identities=27% Similarity=0.392 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456677778888888888888888888888888888888888888888888888888877664
No 340
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.38 E-value=0.073 Score=44.46 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=70.3
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC-QGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
....+.++.+|...+..-.+.|.|.+--.+|.++++.+|.+.+.|.. .+.-+...++.+.+...|.+++..+|+++..+
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 45568888999988888889999999999999999999999999977 55667889999999999999999999987655
Q ss_pred H
Q 040440 330 E 330 (355)
Q Consensus 330 ~ 330 (355)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 4
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.38 E-value=0.2 Score=39.40 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 040440 242 EKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR----DFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 242 ~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
+.|+..|-.. ...-+++.+.+.+|..|. ..+.++++..+.+++++... +++++..|+.++.++|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 6777777763 334467888999998887 67899999999999987653 5889999999999999999885
No 342
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.34 E-value=0.39 Score=47.46 Aligned_cols=132 Identities=11% Similarity=-0.085 Sum_probs=95.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
.++.....|+.|+..|++.....|+.. ++.+..|........ ...-...+.+|+..|+.+...+..+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-EQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-hcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 566777889999999999999988654 556666666543322 1111256999999999988888888889999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYL-------CQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|..+|++++-+++|.-+++..|..+.+-. .+-.+... +-..|....--++...|..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999998765432 23333322 2245666666667777765
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=1 Score=34.57 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=88.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH-----HHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR--VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD-----FKLLIA 265 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~-----~~~~la 265 (355)
+...|..++|+..|..+-+-.-.. .-+....+.+....|+ ...|+..|.+...+...+. ....-+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------ta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------TAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------HHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 445788889999998887765332 2345677788888888 7888888887443333322 345556
Q ss_pred HHHHHccCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELV-KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.++...|.|++-....+.+- ..+|-...+...||....+.|++.+|..+|.+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77888999999888777653 23444566788899999999999999999999876
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=95.21 E-value=0.21 Score=39.64 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++.....++...+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34667888999999999999999998888888899999999999999999999999887655444444443
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.16 E-value=0.37 Score=40.03 Aligned_cols=85 Identities=15% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRK 307 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~ 307 (355)
....++.+++|++.|+......-...+...+|..|+..|++++|+++|+.+......+ ..+...+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4456788899999998866666666778899999999999999999999997654433 3456677888899999
Q ss_pred HHHHHHHHHHH
Q 040440 308 KDEAEKQFEKF 318 (355)
Q Consensus 308 ~~~A~~~~~~~ 318 (355)
.++.+.+.-+.
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88877765544
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=2.8 Score=39.09 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=65.9
Q ss_pred HHHHHHHHHh-------hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 241 IEKAMERCKK-------EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 241 ~~~Al~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
|..+++.|.. ...+..-......++.+|....+.|.|.++++++-+.+|.++-....+-.+....|.-++|+.
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHH
Confidence 5555555554 222223355678889999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhC
Q 040440 314 QFEKFRRLV 322 (355)
Q Consensus 314 ~~~~~l~~~ 322 (355)
+..+.....
T Consensus 450 ~~~~~~s~~ 458 (872)
T KOG4814|consen 450 CLQKIKSSE 458 (872)
T ss_pred HHHHHHhhh
Confidence 998877654
No 347
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.24 Score=40.94 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
..++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.+.|.+.-|++.++..++.-|+++.+-..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 34455578899999999999999999999999999999999999999999999999999999998876443
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=95.05 E-value=2.6 Score=38.21 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|-+...+..+..++...-++.-....+.+++... ++..+++.++.+|... ..++-...+++.++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344445555555556666666777778877764 4556888999999888 6677888999999998888888888888
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR-DFR-PYLCQGIIYT 303 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~-~~~~l~~~~~ 303 (355)
.|.. ++ .+.+...|.+|+..+-.........++|..+-.. --.+.+.-+....+.-+.... ... ++..+-.-|.
T Consensus 141 ~yEk-ik-~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IK-KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hc-hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 8877 44 5566666777766554333333333444333221 123444444444443332221 122 2223334566
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 304 LLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 304 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
...++.+|++.+.-.++.+..+...+..+...
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 77899999999999999988886666555444
No 349
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.04 E-value=0.089 Score=47.19 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
..+....|+..|.+++...|.....+.+.+.++++.+-.- ..-.|+.-+.. ...++.....++.|++++...++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~-----d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRG-----DSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccc-----cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 3445567777888888888877777777777766554300 01111111111 33455555666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 040440 274 HSEALRVYEELVKEEPRD 291 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~ 291 (355)
+.+|+++...+....|.+
T Consensus 461 ~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHhhhhHHHHhhcCchh
Confidence 777776666665555543
No 350
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.26 Score=40.68 Aligned_cols=68 Identities=24% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
...++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34455567888999999999999999999999999999999999999999999999999999998744
No 351
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.85 E-value=0.3 Score=33.63 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHccCHHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPN---------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.++.|+|.+|++.+.+....... ...+...++.++...|++++|+..+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677777777777776654211 12356667778888888888888888888764
No 352
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=2.9 Score=38.49 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
++.....|+..++....+++....|.+..+..
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 55555555666666666666665555544433
No 353
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.71 E-value=0.15 Score=27.82 Aligned_cols=32 Identities=16% Similarity=-0.039 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQ--FEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~--~~~~l~~~p~ 324 (355)
+.++.+|..+..+|++++|++. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456667777777777777777 3355555554
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.68 E-value=0.63 Score=42.18 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
-......|+++++....+.. ++-|.- ......++..+.+.|-.+.|+... .+++..+.|+ .+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-- 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-- 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT---
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC--
Confidence 34556789999988777522 112222 234556677778888888887653 3455554444 56677
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (355)
++.|.++.++ .++...|..||.....+|+++-|.++|+++- -+..+..+|.-.|+.+.-.+.
T Consensus 334 ------L~~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 334 ------LDIALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp ------HHHHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred ------HHHHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHH
Confidence 8888887654 3467799999999999999999999999863 245678888899998777777
Q ss_pred HHHHHHhCC
Q 040440 315 FEKFRRLVP 323 (355)
Q Consensus 315 ~~~~l~~~p 323 (355)
.+.+.....
T Consensus 396 ~~~a~~~~~ 404 (443)
T PF04053_consen 396 AKIAEERGD 404 (443)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHccC
Confidence 766665443
No 355
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=2.6 Score=36.08 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---CC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRK---DP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
...++..+.+.|+.++-....+..-.. .+ ........+........+..+.-.+...+.+++..+.+..--...+
T Consensus 51 Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~L 130 (411)
T KOG1463|consen 51 ILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSL 130 (411)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666666666666554444333222 11 1122233344444444443444455566666666554433333445
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh----CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE----EP--RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
-..++..|...++|.+|+.....++.. +. .-.+++..-..+|....+..+|...+..+..
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 667888999999999999888877642 22 1245566667888888888888888777654
No 356
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.41 Score=44.18 Aligned_cols=79 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+-|.-+++..+|..+++.|...+...|.+.. ....+..||..+.+.+.|.++++++-+.+|.++-....+..+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3455667889999999999999887665432 4667888999999999999999999999999887777666666
Q ss_pred hccCc
Q 040440 228 DGSDK 232 (355)
Q Consensus 228 ~~~~~ 232 (355)
...+.
T Consensus 439 ~~E~~ 443 (872)
T KOG4814|consen 439 LAEDK 443 (872)
T ss_pred HHhcc
Confidence 66665
No 357
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.49 E-value=1.1 Score=42.95 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
-|+-|+.+.+.- ..+++ -...+...|..++..|++++|...|-+.+.. +|... ..-+....+..+-..+++
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHHHHHHHHHH
Confidence 455555544332 11222 2356777888899999999999999988754 22211 111233444455555666
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
...+..-.+.+-...|..+|.+.++
T Consensus 422 ~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 422 ALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHcccccchhHHHHHHHHHHhcc
Confidence 6666554455555566777777766
No 358
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.31 E-value=3 Score=35.60 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=82.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
+.+..++..+..+-++....+++++|+...++..++.- ...-..+|.++++++++.... .+...+.....|.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~-- 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP-- 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc--
Confidence 33444555666666677777778888877777777642 233456777777777764321 1111222222221
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 312 (355)
..+|... .+......+...++.+-.++|+..+|++.++...+..|-. ..+.-++...+..+.-|.+..
T Consensus 262 ------~~da~~r----RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 262 ------QHEAQLR----RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred ------chhhhhh----cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0111122334556777788888888888888877766621 234556666666666666665
Q ss_pred HHHHHHHHh
Q 040440 313 KQFEKFRRL 321 (355)
Q Consensus 313 ~~~~~~l~~ 321 (355)
..+-+.-++
T Consensus 332 avLakYDdi 340 (556)
T KOG3807|consen 332 AVLAKYDDI 340 (556)
T ss_pred HHHHhhccc
Confidence 555555443
No 359
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.31 E-value=2 Score=39.99 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++....++|++|....++.-+. -.++|+-.|..+....+++||.+.|.++
T Consensus 781 qlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445556677776666553322 2345666677777777777777666554
No 360
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=4.5 Score=37.26 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=98.0
Q ss_pred ccCHHHHHHHHHHHHHc------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------
Q 040440 162 SQKLVEAVDVIDRLIEL------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK----------------- 212 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------- 212 (355)
.+.|++|...|.-+... .|.+.+.+..++.++..+|+.+-|.+..++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777766666544 5666778999999999999999888888777632
Q ss_pred ----CCCCHHHHH---HHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHHHHHHHHHHH-HccCHHHHHHHHH
Q 040440 213 ----DPLRVEAYH---GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDFKLLIAQIKV-MESKHSEALRVYE 282 (355)
Q Consensus 213 ----~p~~~~~~~---~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~ 282 (355)
+|.|...|. ....-+.+.|- +..|+++++- ...+|. ++.....+..+|. +..+|+=-++.++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC--------~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGC--------WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122333222 22223344454 7888888887 444554 5555555555554 5677777777777
Q ss_pred HHHHh-----CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 040440 283 ELVKE-----EPRDFRPYLCQGIIYTLLRK---KDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 283 ~~l~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~ 324 (355)
..-.. -| +...-..++..|..... .+.|...+.+|+...|.
T Consensus 403 ~~e~~n~l~~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 403 EPENMNKLSQLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhhccHhhcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 66332 23 33333456666665554 57788899999888873
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.04 E-value=0.1 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~ 315 (355)
.+.+|.++...|+.++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555444
No 362
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.00 E-value=2.1 Score=35.85 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+....+..|...|.+.+|+++.++++..+|-+...+..+..++..+|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444577889999999999999999999999999999999999999998888888877643
No 363
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.28 Score=44.22 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK---SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
.+..++..|.+++...|.....+.+.+.++.+ .|+.-.|+.-...+++++|....+++.|+.++..++++.+|++..
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 56788999999999999999999998888875 467778888888999999999999999999999999999999998
Q ss_pred HHHHhhCCCCH
Q 040440 207 EEILRKDPLRV 217 (355)
Q Consensus 207 ~~~~~~~p~~~ 217 (355)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 88888788544
No 364
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.86 E-value=0.91 Score=29.68 Aligned_cols=53 Identities=8% Similarity=-0.085 Sum_probs=31.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA---QVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~ 208 (355)
|.-++..++.++|+..++++++..++..+-+..+| .+|...|+|.+.+++--.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666677777777777766665555444433 556666666666665443
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.80 E-value=0.29 Score=26.69 Aligned_cols=20 Identities=25% Similarity=0.105 Sum_probs=9.8
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDV 171 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~ 171 (355)
+..+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
No 366
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.80 E-value=6.7 Score=37.79 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=111.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCHH--------------H
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS-YAGESE--------------A 201 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~--------------~ 201 (355)
.+++.++..+.....|..+.......|+.-.-...+++++...+.+...|...+...- .++-.+ -
T Consensus 300 ~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 300 KFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 3444445555555667777777778888888888888888777777777766654221 111111 1
Q ss_pred HHHHHHHHH---hhCCCCHHH--------------HHHHHHHHhc-cC-----chHHHHHHHHHHHHHHHHhhcc--CCc
Q 040440 202 AIKGFEEIL---RKDPLRVEA--------------YHGLVMAYDG-SD-----KKLNEVEKRIEKAMERCKKEKK--KSD 256 (355)
Q Consensus 202 A~~~~~~~~---~~~p~~~~~--------------~~~l~~~~~~-~~-----~~~~~a~~~~~~Al~~~~~~~~--~~~ 256 (355)
...++++++ +.+...... .+.....|.+ .+ ..++.....++.|...+..... ...
T Consensus 380 tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt 459 (881)
T KOG0128|consen 380 TGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT 459 (881)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 112222221 111110000 0011111111 11 1144556778888888877322 233
Q ss_pred hHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKV-MESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
...++...|.+++ .+++.+.++.+++..+.....+.. .|+....+-...|+...++.++++++..
T Consensus 460 ~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 460 RTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 3455666677765 468899999999998877666666 8888899999999999999999888765
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.76 E-value=0.096 Score=26.12 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccCHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~ 172 (355)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555444
No 368
>PF13041 PPR_2: PPR repeat family
Probab=93.65 E-value=0.61 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
..|..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34455555555555555555555555443
No 369
>PF13041 PPR_2: PPR repeat family
Probab=93.61 E-value=0.49 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAY 227 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 227 (355)
+...|..+...+.+.|++++|.++|+++.+.. +-+...+..+...+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34567788889999999999999999999875 33555565555544
No 370
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=3.7 Score=37.84 Aligned_cols=95 Identities=16% Similarity=0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 040440 134 KEKEIEQHLAANPNDIEALQT--LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE-IL 210 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~ 210 (355)
++..+...+..++.+...+.. +...+...++...+.-.+...+..+|++.....+++......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555666677777776433 366666778888888888889999999988888888888777777766666655 77
Q ss_pred hhCCCCHHHHHHHHHHHh
Q 040440 211 RKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~ 228 (355)
...|++......+..+|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred hcCcchHHHHhhHHHHHH
Confidence 777888777666644444
No 371
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=4.1 Score=34.10 Aligned_cols=194 Identities=14% Similarity=0.064 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---C--CCchHHHHHHHH-HH
Q 040440 128 DVSYEEKEKEIEQHLAANP--------NDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---E--PNEFEWQLLKAQ-VQ 193 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~la~-~~ 193 (355)
..++++|+..|.+.+...- +.......++..|...|++..-.+.....-+. . |....+...+.. .-
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 3499999999999997622 12346778999999999987755555443222 1 222222222221 11
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEA------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
.....++.-+..++..++........ -..+..++.+.|. +..++.....-+.-+++....+.-..++..-..+
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv 174 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALINPLLHELKKYDDKINLITVHLLESKV 174 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH
Confidence 23356677777777777654332222 2355667778887 5555555555555555666667777788888899
Q ss_pred HHHccCHHHHHHHHHHHHHh-----CCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 268 KVMESKHSEALRVYEELVKE-----EPRDFRPY--LCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|...++..++..-+..+-.. .|....+. ..-|...+...+|.-|-.+|-++++-.
T Consensus 175 yh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 175 YHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 99999998888877766543 23222222 223556667778999999998887743
No 372
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.38 E-value=9.5 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.049 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 129 VSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKS----Q---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
..|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++.. -.|.-+--|...|.+|.++|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhh
Confidence 47899999999999988875 45666677666532 2 5788888888754 345566678899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~ 219 (355)
|++-++.|.-+++..|+++..
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 568 YNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999887754
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.37 E-value=1 Score=35.56 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=50.5
Q ss_pred HHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHhccCc
Q 040440 159 RIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL----RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~ 232 (355)
++..-.-++|...|-++-... -++++..+.+|..|. ..+.++++.++-+++++... +++++..|+.++...++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 455545567777776654332 255667777777444 67888888888888887532 57888888888888776
No 374
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.34 E-value=5.1 Score=35.72 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE--WQ--LLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
...+...+..++|..|...++.+...-|.... .+ ...|..++..-++++|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555667888999999999888875233222 22 23445566778888999998887765
No 375
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=93.26 E-value=0.22 Score=42.45 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
..+...++.++++.|..-|.++........ .. + -.+... +...........+..++.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s-----------~~-~--------~~e~~~--~~~~~~~~r~~~~~n~~~~ 284 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS-----------RD-R--------EKEQEN--RIPPLRELRFSIRRNLAAV 284 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc-----------cc-c--------cccccc--ccccccccccccccchHHh
Confidence 346667888899999888888876432100 00 0 000000 0000111222334457888
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
-++.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++......+...
T Consensus 285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88999999999998888888888899999999999999999999999999999999986654444333
No 376
>PF12854 PPR_1: PPR repeat
Probab=93.16 E-value=0.21 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
|...|..+...|.+.|+.++|.++|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4566777777888888888888877753
No 377
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=93.15 E-value=2.5 Score=30.89 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLR---DFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKK 308 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~ 308 (355)
.......+++++..+.......++. .+|...+. . .+.+.++|+.+.... -.....|...|..+...|++
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----L--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----T--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----H--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 3444556777777776633333332 33333332 1 228888888877643 34567788889999999999
Q ss_pred HHHHHHHHHHH
Q 040440 309 DEAEKQFEKFR 319 (355)
Q Consensus 309 ~~A~~~~~~~l 319 (355)
++|.++|+.++
T Consensus 116 ~~A~~I~~~Gi 126 (126)
T PF08311_consen 116 KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999988764
No 378
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.09 E-value=0.92 Score=39.84 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
...+..||.+.++.+-|+....+.+.++|..+..+...+.++..+.+|.+|..-+-.+.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999987665543
No 379
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=93.00 E-value=5.1 Score=34.06 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EP--NEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.+.+++-....|+..++++..+...+..|+|..|-.++-..... ++ +...+.+..-..-.-..+|+.|++.+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444567888999999999999999999998876554443 22 233333333333556789999999988776
Q ss_pred hhCC-CC--H--HH-----H--HHHHHHHhc--cCchHHHHHH------HHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 211 RKDP-LR--V--EA-----Y--HGLVMAYDG--SDKKLNEVEK------RIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 211 ~~~p-~~--~--~~-----~--~~l~~~~~~--~~~~~~~a~~------~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
+.-. +. . .. | .+-..++.. .|+ +...+ .|-.||+. .-+.++..++..-.-
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgr--d~iid~fly~p~YLNaIQt--------~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGR--DTIIDMFLYQPPYLNAIQT--------SCPHLLRYLATAVVT 264 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChh--hHHHHHHccCHHHHHHHHh--------hCHHHHHHHHHHhhc
Confidence 6521 11 1 11 1 111111221 221 11110 01222221 112333334433332
Q ss_pred -ccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 271 -ESKHSEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 271 -~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+...+++.+-++++.... ..+.....-.|++-.=+++.|...++++-+.--+|+-.
T Consensus 265 nk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFL 324 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFL 324 (432)
T ss_pred chHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhH
Confidence 36677788888888765432 22233444556666779999999999988876666433
No 380
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.82 E-value=0.31 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++..+|.+-...++|++|..-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777653
No 381
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=92.81 E-value=4.7 Score=33.19 Aligned_cols=167 Identities=18% Similarity=0.191 Sum_probs=91.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHh
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQS-YAGESEAAIKGFEEILRKDPLR-VEAYHGLVMAYD 228 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 228 (355)
+..+|.+..+.|+|++.+.++++++..+++-. +-...++.+|- ..|....+...+.......... ......+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 56788888999999999999999998866432 23444444442 3455555666555554443222 122222222221
Q ss_pred ccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc-----c-----CHHHHHHHHHHHHH-----hC
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME-----S-----KHSEALRVYEELVK-----EE 288 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~-----g-----~~~~A~~~~~~~l~-----~~ 288 (355)
. .-.++......+.+.+++. ... .+....+ +-..|..|... | -.++|...|++++. +.
T Consensus 84 ~--kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 161 (236)
T PF00244_consen 84 K--KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELP 161 (236)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccC
Confidence 1 1133444556677777776 111 1222222 22345544322 1 23678888888875 35
Q ss_pred CCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 040440 289 PRDFR---PYLCQGIIY-TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 289 ~~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~~l~ 320 (355)
|.++. ...+.+..| ..+|+.++|.+..++++.
T Consensus 162 ~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 162 PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55542 334444444 558999999998888765
No 382
>PF12854 PPR_1: PPR repeat
Probab=92.68 E-value=0.31 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
|...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556677777777777777777777765
No 383
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.67 E-value=3.2 Score=30.84 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
...+.....+.+++.++..++.+...+..+..+|.+. +..+.++.++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445666666777766666555555666666665543 2333344433
No 384
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.31 E-value=0.29 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
++..+|.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 385
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=8.2 Score=34.10 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK------------SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
--+++++.-.+.++.+|+...+|+..-.++.. ..-+++-+.+...+++.+|+...+|+.+..++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 34567777788888899887777654444332 234667788888899999999999999999888776
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHH----
Q 040440 198 --ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVM---- 270 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~---- 270 (355)
++..-+.+.+++++.+|.+..+|...=.++......-. ...+-+++..+ +..+..+..+|.....+.-.
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~----~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN----LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc----cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 46788899999999999988887654444333222100 02233344444 33455555555555444431
Q ss_pred --ccC------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 271 --ESK------HSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 271 --~g~------~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
.|+ ...-++....++-.+|+|..+|+..-..
T Consensus 200 ~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 200 EADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred cccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 231 2334455556666788888888774333
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.51 E-value=0.51 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l 285 (355)
.+|..|+..|+.+.|.+.+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
No 387
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.51 E-value=1.2 Score=37.18 Aligned_cols=116 Identities=23% Similarity=0.179 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVR----IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|+.+-+...+++-..+ ...+-+..+...| +...+|.=|...=+++-.+ ........+..|...|.+.+|+.+
T Consensus 226 Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~l---y~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 226 DVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL---YMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred cHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH---HHHHHHHHHHHHHHcCChHHHHHH
Confidence 5556566666655555 4444444444433 1222222222221111111 112344566778888999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.++++..+|-+...+..+..++...|+. -.+.+.|+.--+.++.
T Consensus 302 ~qr~ltldpL~e~~nk~lm~~la~~gD~-is~~khyerya~vlea 345 (361)
T COG3947 302 HQRALTLDPLSEQDNKGLMASLATLGDE-ISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHH
Confidence 9999999999999999999999888883 3444445544444444
No 388
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=8.5 Score=32.92 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP---LRVE---AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~ 255 (355)
..+++..++..|++.||.+.|.+.+.+..+..- .-.+ ....+|..|.. .+-..+..++|-.++++.....
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D----~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD----HDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHhCCChh
Confidence 345888999999999999999998888776531 1112 23345555533 3344455777777777755444
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
....+....|.......++.+|-..|-..+...
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 444455556666677788999998888876543
No 389
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.29 E-value=0.64 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
|+.+.|..+|++++...|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777888888888777777777766543
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=90.99 E-value=0.54 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+.++.+|..+|+.+.|.+.+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367899999999999999999999953
No 391
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.76 E-value=1.4 Score=37.28 Aligned_cols=62 Identities=10% Similarity=-0.045 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 195 (355)
|+.+|.+++...|++...++.+|.++...|+.=.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555553322233444444444443
No 392
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=90.74 E-value=0.47 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
|..+...|.+.|++++|.+.|+++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555566666666666666666543
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=90.50 E-value=1 Score=23.23 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.+.+...|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 444555555555555555555544433
No 394
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.46 E-value=5.5 Score=29.22 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+...+|+-++-.++++...+....++.....+|.+|.+.|+..++.+.+.++-+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44678888888888888887666689999999999999999999999999987753
No 395
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.16 E-value=7.3 Score=34.54 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+..||...++.+-|+....+.|.++|....-+...+.++..+.+|.+|-..
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555555555555555555555443
No 396
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=89.97 E-value=8.4 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA-QVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
...+..+-......|||+.|-..|--++...+-+......+| .++.+.+.-....++++.+....+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 445666777788999999999999999887665655555565 556666655555566666666554
No 397
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.92 E-value=2.4 Score=37.74 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc---------CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK---------KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
..++.+++.-.|+ |..|++.++.... .+-...+++.+|-+|..+++|.+|++.|...+-.-..
T Consensus 125 ligLlRvh~LLGD--------Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGD--------YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccC--------HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888 9999998887322 2234456888999999999999999999988753211
Q ss_pred ChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCC
Q 040440 291 DFRPYLCQGII-YTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 291 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+.....- -.-.+..++....+--++.+.|.
T Consensus 197 ~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 197 TKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11000111111 11124456666666667777775
No 398
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.45 E-value=13 Score=31.97 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=36.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
....+..+-++....+++++|+...++..++.-- ..-..+|...++++++.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 3344777778888999999999999998887642 23456677777776653
No 399
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=89.37 E-value=0.72 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
|..+...|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445555555555555555555443
No 400
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=14 Score=31.92 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++.+-+..+..+.-.|++.++..++.+..-+.|+.
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 45666777888888899999999999999888874
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.89 E-value=4.3 Score=26.63 Aligned_cols=54 Identities=7% Similarity=-0.094 Sum_probs=40.7
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPY---LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++...+.++|+..++++++..++...-+ -.+..+|...|++.+++++--.-+++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999877665544 45566788889998888876554443
No 402
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.74 E-value=6.4 Score=39.56 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
..|+.-+..++++-+|-++..+.+.. | -..-..|.+...|++|+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~------~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-P------EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-H------HHHHHHHhhHhHHHHHHHHHHh
Confidence 34444455556655555555554331 1 1122334444456666555443
No 403
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.70 E-value=9.9 Score=31.99 Aligned_cols=84 Identities=8% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---Ch---HHHHHHHHHHHHcCCHHHHHH
Q 040440 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DF---RPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 240 ~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++++++-.+..+......+++.++|..|.+.++.+.+.+.+.+.+...-. .. -....+|.+|..+.-.++-++
T Consensus 97 Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE 176 (412)
T COG5187 97 ELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLE 176 (412)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 366666666555555566778888999999999999999888887764321 12 233456666666555566666
Q ss_pred HHHHHHHhCC
Q 040440 314 QFEKFRRLVP 323 (355)
Q Consensus 314 ~~~~~l~~~p 323 (355)
..+..++..-
T Consensus 177 ~~~~~iEkGg 186 (412)
T COG5187 177 VADDIIEKGG 186 (412)
T ss_pred HHHHHHHhCC
Confidence 6666665543
No 404
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.67 E-value=7.2 Score=37.29 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHH------HHHHHHHHH---HHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIE------ALQTLMEVR---IKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 194 (355)
|.+- ||+.-+++.+.. +.-|+..+ ..+..+.++ -+-||-++|+...-.+++... -.++.+...|++|-
T Consensus 211 yRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYK 289 (1226)
T KOG4279|consen 211 YRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYK 289 (1226)
T ss_pred hccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhh
Confidence 4444 888888777664 33443211 111122222 245889999999988888743 34455555565553
Q ss_pred ---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 195 ---------YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 195 ---------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
..+..+.|+++|+++.+..|..... .+++.++...|+
T Consensus 290 DmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~ 335 (1226)
T KOG4279|consen 290 DMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGE 335 (1226)
T ss_pred hhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhh
Confidence 3456778999999999998854322 334555555554
No 405
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=88.58 E-value=1.2 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
|..+...|.+.|++++|.++|+++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666666544
No 406
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=88.36 E-value=2.2 Score=33.91 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777778 7888999999999999999999999999999994
No 407
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.28 E-value=9 Score=35.67 Aligned_cols=71 Identities=21% Similarity=0.040 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
-+...+.+++++..++... .+ .+..+.|+++.|.++..++ ++..-|..||.+....|++..|.++|.++..
T Consensus 624 le~~g~~e~AL~~s~D~d~-rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 624 LESQGMKEQALELSTDPDQ-RF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhccchHhhhhcCCChhh-hh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3334455555555544322 22 2345667777777765543 4556788888888888999999888887754
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=88.17 E-value=2.3 Score=35.92 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 168 AVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
|+.+|.+|+.+.|.....+..+|.++...|+.-+|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765567778888877776
No 409
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.11 E-value=9.9 Score=33.61 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA----GESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~ 203 (355)
-+++-+.+...+++.+|+...+|+....++.+.+ ++..=+.+.+++++.+|.+-.+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4577788999999999999999999999998766 468899999999999998877665544433332 2356778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
++..+++..++.|..+|.....+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8899999989999999887776654
No 410
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=87.38 E-value=1.6 Score=22.86 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|..+...|.+.|++++|.+.|++..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4667777888888888888888877653
No 411
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.33 E-value=5 Score=29.92 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
..+.....+...+..|++.-|.++.+.++..+|++..+...++.++.+.|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34556666777777788888888888888888877777777777666554
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.24 E-value=5.6 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
...+++.+|-+|..+++|.+|++.|...+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666654
No 413
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.10 E-value=14 Score=29.75 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
-+.+.+..++++...+.-++..|.+......+-.+++-.|+|++|..-++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44566667777777777777777776666666677777777777777777776666654
No 414
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=86.57 E-value=2.2 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
.|..+...+.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566666666666666666544
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.86 E-value=23 Score=31.67 Aligned_cols=44 Identities=32% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHhc
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE--AYHGLVMAYDG 229 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~ 229 (355)
....+...+..++|..|.+.++.+...-|.... .+..++..|..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~ 179 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA 179 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 345566788999999999999999986344333 45555555544
No 416
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=85.62 E-value=22 Score=30.52 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHH
Q 040440 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 240 ~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++++++-.++........+++...|..|.+.|+.+.|++.+.+..+..- +-.-....+|..|..+.-..+-++
T Consensus 86 eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ie 165 (393)
T KOG0687|consen 86 ELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 35666666555545566678889999999999999999999988776432 112234456666655544444444
Q ss_pred HHHHHHHh
Q 040440 314 QFEKFRRL 321 (355)
Q Consensus 314 ~~~~~l~~ 321 (355)
-.+..++.
T Consensus 166 kak~liE~ 173 (393)
T KOG0687|consen 166 KAKSLIEE 173 (393)
T ss_pred HHHHHHHh
Confidence 44444443
No 417
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.53 E-value=19 Score=29.67 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN-DIEALQTLMEVRI-KSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 205 (355)
++|++.+..+++++..+++ +.+-...+..+|- ..|....+...+....+...... .....+..-|. ..=-++-...
T Consensus 15 eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk-~kie~EL~~~ 93 (236)
T PF00244_consen 15 ERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK-KKIEDELIDI 93 (236)
T ss_dssp THHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH-HHHHHHHHHH
Confidence 4999999999999998776 4555566666653 34556666666665554432221 11112211111 1111122222
Q ss_pred HHHHHhh-------CCCCHHH----HHHHHHHHhc-----cCc----hHHHHHHHHHHHHHHHHh--hccCCchHHHHHH
Q 040440 206 FEEILRK-------DPLRVEA----YHGLVMAYDG-----SDK----KLNEVEKRIEKAMERCKK--EKKKSDLRDFKLL 263 (355)
Q Consensus 206 ~~~~~~~-------~p~~~~~----~~~l~~~~~~-----~~~----~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~ 263 (355)
+..++.+ ...+.+. +...|..|.- .|+ ..+.+...|++|+++.+. ...+|....+..+
T Consensus 94 C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN 173 (236)
T PF00244_consen 94 CNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALN 173 (236)
T ss_dssp HHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHH
Confidence 3333322 1122222 1122333211 121 145678889999999888 2334444555666
Q ss_pred HHHHHH-HccCHHHHHHHHHHHHHh
Q 040440 264 IAQIKV-MESKHSEALRVYEELVKE 287 (355)
Q Consensus 264 la~~~~-~~g~~~~A~~~~~~~l~~ 287 (355)
.+.+|+ ..|+.++|++..++++..
T Consensus 174 ~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 174 YSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 666664 489999999999888753
No 418
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.46 E-value=25 Score=33.32 Aligned_cols=190 Identities=16% Similarity=0.021 Sum_probs=91.1
Q ss_pred ccccchhhhhhhhhhhccCCHHHHHHHHHHHHHc--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 111 TVESTNESTKDTTSAREDVSYEEKEKEIEQHLAA--------------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
.+.+.+..++.. +.+..+++-|.+.|.++-.. ...-+ --..++.++...|++.+|.+.|.+.=
T Consensus 583 Vv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 583 VTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred eecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcC
Confidence 344555555543 45556777777777765321 11111 12345566666666666666665421
Q ss_pred ------HcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 177 ------ELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 177 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
++..+ --.+.+++-+...|.-++-..+.++--+. +-+.+.+ -+..+...|+ ..+|+.++
T Consensus 660 ~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka---AAEmLiSaGe--------~~KAi~i~ 726 (1081)
T KOG1538|consen 660 HENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA---AAEMLISAGE--------HVKAIEIC 726 (1081)
T ss_pred chhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---HHHHhhcccc--------hhhhhhhh
Confidence 11110 01233344444444444433333332221 1122222 2444555555 66666654
Q ss_pred Hh-----------hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 249 KK-----------EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 249 ~~-----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
-. .+.+..+.+.+..++..+.....+.-|-++|.++-.. -.+..++...++|.+|...-++
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhh
Confidence 33 1112222333444444445555555555555554211 2345566778889999887776
Q ss_pred HHHhCCC
Q 040440 318 FRRLVPR 324 (355)
Q Consensus 318 ~l~~~p~ 324 (355)
.-+..|+
T Consensus 799 hPe~~~d 805 (1081)
T KOG1538|consen 799 HPEFKDD 805 (1081)
T ss_pred Ccccccc
Confidence 6555443
No 419
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=85.25 E-value=13 Score=27.51 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
..+...+.....+.+++.++..++.+......+..+|...+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 44556688999999999999988888888888888887664
No 420
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.31 E-value=73 Score=35.32 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.-.+.|...|.+....|.++.|...+-++.+.. -+.++...|...+..|+-..|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999888765 56788999999999999999999999999764
No 421
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=84.30 E-value=3.4 Score=21.51 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566666666666666655544
No 422
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.27 E-value=6.6 Score=34.83 Aligned_cols=109 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI-KGFEEILR 211 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~ 211 (355)
+|+-+++.++..+|.+......+..+|...|-...|...|..+--..-.....-+.+..-....|.+..+. ..++.+..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
....+..-.-.....-++.|. |.+..+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gs--------ysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGS--------YSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--------chhHHHHHH
No 423
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.54 E-value=14 Score=28.92 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhC
Q 040440 214 PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV-----MESKHSEALRVYEELVKEE 288 (355)
Q Consensus 214 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~~ 288 (355)
...++.-+.|+. .++...+.|++|..+++..-.....+...+.+|..++ ..++...|++.++.+-.
T Consensus 31 EK~Pe~C~lLgd-------YlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-- 101 (248)
T KOG4014|consen 31 EKRPESCQLLGD-------YLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-- 101 (248)
T ss_pred cCCchHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence 345666655554 4555666799999999986655566666666666554 23578999999998865
Q ss_pred CCChHHHHHHHHHHHHc-----CC--HHHHHHHHHHHHHhCCC
Q 040440 289 PRDFRPYLCQGIIYTLL-----RK--KDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~-----g~--~~~A~~~~~~~l~~~p~ 324 (355)
.+.+.+-..+|.++..- ++ .++|++++.++-.+.-.
T Consensus 102 ~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~ 144 (248)
T KOG4014|consen 102 ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG 144 (248)
T ss_pred cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc
Confidence 34566666777766532 33 67999999999877543
No 424
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.36 E-value=22 Score=33.11 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
+-..+..+|+..|+|++|+++.-++-
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~ag 86 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRAG 86 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 55667889999999999999876653
No 425
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=82.77 E-value=26 Score=29.01 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=88.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc-CC--CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIEL-EP--NEFEWQLLKAQVQS-YAGESEAAIKGFEEILRKD-PLRVEAYHGLVMA 226 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 226 (355)
+..++.+.-+.|+|++.+.+..++++. ++ -+.+-...+..+|- ..|....+...+...-... .....-...+..-
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Confidence 345677778889999999999988876 43 23344455555443 3466777777766533321 1111111122222
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh--hccC--CchHH-HHHHHHHHHHHc-----cC-----HHHHHHHHHHHHHh----
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK--EKKK--SDLRD-FKLLIAQIKVME-----SK-----HSEALRVYEELVKE---- 287 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~--~~~~--~~~~~-~~~~la~~~~~~-----g~-----~~~A~~~~~~~l~~---- 287 (355)
|.. +-.++......+.+.+++. .... +.... ++-..|+.|... |+ .++|.+.|+++++.
T Consensus 84 yr~--kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~ 161 (244)
T smart00101 84 YRG--KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAE 161 (244)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 221 1123344456666777666 1111 11111 122334444322 22 45888999988764
Q ss_pred -CCCChH---HHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 040440 288 -EPRDFR---PYLCQGII-YTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 288 -~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~~l~ 320 (355)
.|.++. ...+.+.. |..+++.++|...-++++.
T Consensus 162 L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 162 LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 354442 23333333 4457999998877776654
No 426
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.02 E-value=51 Score=31.87 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=29.0
Q ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 134 KEKEIEQHLAA--NPNDIEALQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 134 A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
.+...+...+. .|+...+-.....+|+..|+|++|+++.-++
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445544442 2334455567788999999999999998776
No 427
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=82.01 E-value=40 Score=30.60 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
....+|+.++..|||+-|...|+-+.+...++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 35679999999999999999999887654433
No 428
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.75 E-value=3.7 Score=26.77 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=10.1
Q ss_pred HccCHHHHHHHHHHHHH
Q 040440 161 KSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~ 177 (355)
..|+|++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34566666666666554
No 429
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=81.43 E-value=24 Score=27.66 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL----RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~ 321 (355)
.+....+.++|.++--++-++ +++++-.++...|..- .+-++|..+-.++.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 344456777888877777665 3455555666665432 2456666666666554
No 430
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=81.28 E-value=35 Score=29.54 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
++|+.+-+-.....|..++++-.++.+.++..+...=...=-..+-+...+.. .+.-+-.+++...+.++..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHHHH
Confidence 66787777778888999988887777765432211000000000001111111 1222234455666666665
Q ss_pred hCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C
Q 040440 212 KDP-LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--E 288 (355)
Q Consensus 212 ~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~ 288 (355)
... ......-.++.++...... ....+..-..+|.-+.....++.+-.+.+....+..-.+.++...+-+... -
T Consensus 285 ~~~pGPYqlqAAIaa~HA~a~~a---edtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 285 SRRPGPYQLQAAIAALHARARRA---EDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred cCCCChHHHHHHHHHHHHhhccc---CCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 432 2222222222222211100 000022222222222222233334444454555555566666666665543 1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
......+-..|..+.++|+.++|...|++++.+.++.
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 2344556677888888888888888888888887754
No 431
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=81.22 E-value=19 Score=26.30 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHH
Q 040440 237 VEKRIEKAMERCKKE---KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 237 a~~~~~~Al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A 311 (355)
....+++++..+... .+++....+|..++... ++..++|..+....- .....|...|..+...|++.+|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A 118 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKA 118 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344466666666553 23333334444444331 335556666655432 3455666777778888888888
Q ss_pred HHHHHH
Q 040440 312 EKQFEK 317 (355)
Q Consensus 312 ~~~~~~ 317 (355)
.++|+.
T Consensus 119 ~~iy~~ 124 (125)
T smart00777 119 DEVYQL 124 (125)
T ss_pred HHHHHc
Confidence 877763
No 432
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=81.16 E-value=19 Score=29.89 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
...+|..|...|+ ++.|...++.+...+.+..=..-...+...+..|+...|+.+..+.+.-+++
T Consensus 181 ~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455666666666 3333333333333332211122234456666777888888887777665543
No 433
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.49 E-value=46 Score=32.29 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
.+.-.|+..|...++|++|+..|-++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhc
Confidence 34444666666666666666666554
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.26 E-value=43 Score=29.86 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP-------- 289 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------- 289 (355)
.++..++..|...|+ ++.|.+.|.++.+++.. .......+.++..+-+..|+|..-..+..++.....
T Consensus 151 ra~~Dl~dhy~~cG~-l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQ-LDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhcc-HHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence 346677777888887 55555555555444433 233455666777777778888877777777665410
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
-...+...-|.+....++|..|..+|-.+
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12334556666677777888888877654
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.08 E-value=43 Score=29.82 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----HhhccCCch
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDP---LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC----KKEKKKSDL 257 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~----~~~~~~~~~ 257 (355)
++..+|..|...|+++.|++.|-++-..-- .....+.++..+-...|+ |.....+..+|.... ......+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~n-w~hv~sy~~~A~st~~~~~~~~q~v~~- 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGN-WGHVLSYISKAESTPDANENLAQEVPA- 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHhCchhhhhHHHhcCc-
Confidence 455667777777777777777777443321 123344555555555555 444444455554442 11111222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
.+...-|......++|..|.++|-.+.
T Consensus 230 -kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 -KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233344445555567777777775543
No 436
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=79.86 E-value=40 Score=29.25 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
-++|+.+-.-...+-|..++++-.++.+..+..+...=...=-..+-+..++...|.. ...+++
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r----------------~lI~eg 275 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDR----------------ALIDEG 275 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhH----------------HHHHHH
Confidence 4566666666667777777776666655443322211000000111112223333322 114444
Q ss_pred HHHHHh--hccCCchHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 245 MERCKK--EKKKSDLRDFKLLIAQIKVM-----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 245 l~~~~~--~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
+..+.+ ....+.-..+.-.++.++.. .-+|..-..+|+-.....| ++.+-.+.+....+..-.+.++...+-
T Consensus 276 ~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~ 354 (415)
T COG4941 276 LALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEA 354 (415)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHH
Confidence 444444 22334444444455554443 2467777777777777777 555555566655555555566665554
Q ss_pred HHH
Q 040440 318 FRR 320 (355)
Q Consensus 318 ~l~ 320 (355)
...
T Consensus 355 L~~ 357 (415)
T COG4941 355 LLA 357 (415)
T ss_pred hhc
Confidence 443
No 437
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.77 E-value=8.2 Score=36.93 Aligned_cols=128 Identities=15% Similarity=0.125 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH------HHHHHHHHH---HccCHHHHHHHHHHHHH
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF------KLLIAQIKV---MESKHSEALRVYEELVK 286 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~------~~~la~~~~---~~g~~~~A~~~~~~~l~ 286 (355)
.++...++...|....+ |+.-+++.+.++..|+...+ .+.++..+- +-|+-++|+...-.+++
T Consensus 200 ~~d~V~nlmlSyRDvQd--------Y~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve 271 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQD--------YDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVE 271 (1226)
T ss_pred CHHHHHHHHhhhccccc--------hHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHH
Confidence 45556666666766666 66666666665555543332 122222222 24788888888888877
Q ss_pred hCC-CChHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhccHHhhhhh
Q 040440 287 EEP-RDFRPYLCQGIIYTL---------LRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRESM 351 (355)
Q Consensus 287 ~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (355)
... -.++.++..|.+|.. .+..+.|+++|+++.+..|.....-.+-.....+...|....+...+
T Consensus 272 ~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~I 346 (1226)
T KOG4279|consen 272 KEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQI 346 (1226)
T ss_pred hcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHH
Confidence 543 345666666777654 35567889999999998887643333333333344555554444433
No 438
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=79.30 E-value=6 Score=20.84 Aligned_cols=26 Identities=19% Similarity=0.434 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
+++.|..+|++.+...| ++..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 45666667777666665 455555544
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.22 E-value=28 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=18.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC
Q 040440 193 QSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+..|+|+.|+++.+.+++.+-
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCC
Confidence 5678999999999999999863
No 440
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.91 E-value=51 Score=29.92 Aligned_cols=103 Identities=15% Similarity=-0.003 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHhccCch------HHHHHHHHHHHHHHHHhh-
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE------AYHGLVMAYDGSDKK------LNEVEKRIEKAMERCKKE- 251 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~~~~------~~~a~~~~~~Al~~~~~~- 251 (355)
....+|..++..|+|+-|...|+.+.+-..++.. +....+.+....+.. .+....+++.|...|.+.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 3667999999999999999999998875433321 122334444444432 236667888888888772
Q ss_pred ----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 252 ----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 252 ----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
.............+.++...|.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 122244445666777788888888877776666544
No 441
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.75 E-value=9.7 Score=28.42 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=34.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
...+.-.+..|++.-|.++.+.++..+|++..+...++.++.++|.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3345566778999999999999999999999888888888877764
No 442
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=77.05 E-value=62 Score=33.12 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=7.7
Q ss_pred HHHHcCCHHHHHHHHHH
Q 040440 192 VQSYAGESEAAIKGFEE 208 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~ 208 (355)
.|...|+.++|++.|+.
T Consensus 961 ~Ye~~GklekAl~a~~~ 977 (1265)
T KOG1920|consen 961 MYERCGKLEKALKAYKE 977 (1265)
T ss_pred HHHHhccHHHHHHHHHH
Confidence 34444444444444443
No 443
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=77.01 E-value=14 Score=24.16 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=9.5
Q ss_pred HHHccCHHHHHHHHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~ 176 (355)
+-..|++++|+.+|++++
T Consensus 16 ~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 16 AEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHhcCCHHHHHHHHHHHH
Confidence 345555555555555544
No 444
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.54 E-value=68 Score=30.33 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+++.|.++..+ .++..-|..||.+....|++..|.++|.++... ..|-.++...|+-+.-..+-..+
T Consensus 652 rl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~--------~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 652 RLDIAFDLAVE-----ANSEVKWRQLGDAALSAGELPLASECFLRARDL--------GSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred cHHHHHHHHHh-----hcchHHHHHHHHHHhhcccchhHHHHHHhhcch--------hhhhhhhhhcCChhHHHHHHHHH
Confidence 55555554433 366778999999999999999999999987532 22333444556655444443444
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCc
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSD 256 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~ 256 (355)
-+....|.. -.+|...|+ ++++++++.+.+..|.
T Consensus 719 ~~~g~~N~A-----F~~~~l~g~--------~~~C~~lLi~t~r~pe 752 (794)
T KOG0276|consen 719 KKQGKNNLA-----FLAYFLSGD--------YEECLELLISTQRLPE 752 (794)
T ss_pred HhhcccchH-----HHHHHHcCC--------HHHHHHHHHhcCcCcH
Confidence 333333322 245667777 8888888776544443
No 445
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=48 Score=28.11 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDP---LRVEA---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
+++.++|..|.+.++.+.+.++..+.++..- --.++ ...+|.+|..+ .-..+.++.+-.++++.......
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~----~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR----KVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH----HHHHHHHHHHHHHHHhCCCHHhh
Confidence 4677777777777777777777666665421 11222 22334444222 12222334444444443322222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
..+....|.......++.+|-..+-..+..
T Consensus 192 NRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 192 NRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 333444455555666777777777666543
No 446
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=75.62 E-value=4.1 Score=35.13 Aligned_cols=102 Identities=13% Similarity=0.069 Sum_probs=79.0
Q ss_pred hccCCHHHHHHHHHHHHHc-C--CC----------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 126 REDVSYEEKEKEIEQHLAA-N--PN----------------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~-~--p~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
+.+++++.|..-+.+.+.. + |. -...+..++.+-+..+.+..|+..-..+++.++....++
T Consensus 233 ~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~ 312 (372)
T KOG0546|consen 233 FKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAH 312 (372)
T ss_pred hhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhhCcHH
Confidence 4445888888888777642 1 11 112345677788888999999998888888888888899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+..+..+....++++|++.++.+....|++......+..+-
T Consensus 313 ~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~ 353 (372)
T KOG0546|consen 313 YRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR 353 (372)
T ss_pred HHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence 99999999999999999999999999999887665554443
No 447
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.61 E-value=1e+02 Score=31.72 Aligned_cols=168 Identities=10% Similarity=-0.038 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----------------------------HHHHHHHHHHHHcCC
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----------------------------EWQLLKAQVQSYAGE 198 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------------------~~~~~la~~~~~~g~ 198 (355)
.......+|.+|...|+..+|+.+|.++..-..+.. ..|....+++...+-
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 345677889999999999999999998865422111 112233345555566
Q ss_pred HHHHHHHHHHHHhhCCCC-HH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCH
Q 040440 199 SEAAIKGFEEILRKDPLR-VE---AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKH 274 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~-~~---~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 274 (355)
.+++++...++++.-|++ +. .+..+-......|. +.+|...+-+..........+..+..+++.+|++
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh--------~~qAy~ai~~npdserrrdcLRqlvivLfecg~l 1070 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH--------WFQAYKAILRNPDSERRRDCLRQLVIVLFECGEL 1070 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh--------HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccch
Confidence 666666666666654432 22 12233333344444 7777766665444444455667777778888776
Q ss_pred HHH------------HH-HHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCC
Q 040440 275 SEA------------LR-VYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEK-QFEKFRRLVP 323 (355)
Q Consensus 275 ~~A------------~~-~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~~p 323 (355)
+.- .. +++.+-+..|- ....|..|--.+...++|.+|-. .|+.+..+..
T Consensus 1071 ~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~s 1134 (1480)
T KOG4521|consen 1071 EALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLES 1134 (1480)
T ss_pred HHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcc
Confidence 532 22 22333333332 23445555556677888877755 5666666554
No 448
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=75.58 E-value=47 Score=28.86 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
+...|+...|.++-.+. + -.+...|+....++...++ |++-..+... +..| -.+.-...+....|
T Consensus 187 li~~~~~k~A~kl~k~F-k--v~dkrfw~lki~aLa~~~~--------w~eL~~fa~s-kKsP---IGyepFv~~~~~~~ 251 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEF-K--VPDKRFWWLKIKALAENKD--------WDELEKFAKS-KKSP---IGYEPFVEACLKYG 251 (319)
T ss_pred HHHCCCHHHHHHHHHHc-C--CcHHHHHHHHHHHHHhcCC--------HHHHHHHHhC-CCCC---CChHHHHHHHHHCC
Confidence 44566666665553332 2 1345566666777777776 5444443332 2222 22333455556677
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (355)
+..+|..+..++ ++... ...|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~----~~~~r-----v~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI----PDEER-----VEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC----ChHHH-----HHHHHHCCCHHHHHHH
Confidence 777777777762 11111 1334556666666544
No 449
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.42 E-value=14 Score=29.34 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+..++..++.++..| ++..+..++.++...|+.++|....+++....|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445556666666667 567788889999999999999999999999988
No 450
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=75.37 E-value=12 Score=23.86 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHccCHHHHHHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~ 286 (355)
-.-..|++++|+.+|.++++
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33456777777777776654
No 451
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=75.27 E-value=49 Score=27.88 Aligned_cols=183 Identities=8% Similarity=0.038 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc--CCHHH
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIK--------SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA--GESEA 201 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~ 201 (355)
.+|++.-...+..+|....+|...-.+... .--++.-++++..+++.+|.+-..|...-.++... .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 345666666677777766666554444332 22345667788888999999988888777666554 56777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCc--hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH---HHHHHHccC--
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDK--KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI---AQIKVMESK-- 273 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~--~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l---a~~~~~~g~-- 273 (355)
-....+++++.++.|..+|...-.+.....+ .+.. +.+.++.-.. ...+..+..+|... ....+..|+
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~----~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vi 204 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSD----LKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVI 204 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchh----HHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccc
Confidence 7888899999999888777644443311110 0111 2222222222 33345455554443 222233333
Q ss_pred ----HHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HcCCHHHHHHHHHHH
Q 040440 274 ----HSEALRVYEELVKEEPRDFRPYLCQGIIYT----LLRKKDEAEKQFEKF 318 (355)
Q Consensus 274 ----~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~ 318 (355)
+++-+++.-..+-.+|++..+|..+-.+.. ..-.+++-++.+.+.
T Consensus 205 sqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~~e~v~~L~k~ 257 (328)
T COG5536 205 SQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMIGEKVEDLGKY 257 (328)
T ss_pred hHHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHHHHHHHHHHhh
Confidence 556666777777778888877765543322 222455555555443
No 452
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=75.25 E-value=60 Score=28.90 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=36.5
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCc-----hHHHH--HHHHHHHHcCCHHHHHHHHHH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNE-----FEWQL--LKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~--~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+...+..++|..|...|+.+.+..+.. ...+. ..|..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4446778888889998888888764321 11223 334555677788888888875
No 453
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.10 E-value=88 Score=30.73 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHH---HHHcCCHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV---QSYAGESEAAIKGFE 207 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~---~~~~g~~~~A~~~~~ 207 (355)
-+.-+..++.-+..++.+...+..|..++...|++++-...-.++.+..|..+..|.....- ....++-.++...|+
T Consensus 95 ~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 95 GNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred chhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Confidence 34456677777778888899999999999999999998888888888888888776655422 223467788889999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCc------hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDK------KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~------~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+++.- -+.+..|...+......+. +++.....+++|+..+-- ..........+...-..|...-..++-+.+
T Consensus 175 kal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~ 253 (881)
T KOG0128|consen 175 KALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIAL 253 (881)
T ss_pred HHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 98873 3455555555554443332 144455556666665444 222233344455556666666666777777
Q ss_pred HHHHHHhC
Q 040440 281 YEELVKEE 288 (355)
Q Consensus 281 ~~~~l~~~ 288 (355)
+...+...
T Consensus 254 ~~~el~~~ 261 (881)
T KOG0128|consen 254 FVRELKQP 261 (881)
T ss_pred HHHHHhcc
Confidence 77777654
No 454
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.45 E-value=99 Score=31.00 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=80.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC----CCchHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHH----
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELE----PNEFEWQLLKAQVQSYAGES--EAAIKGFEEILRKDPLRVEAYH---- 221 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~--~~A~~~~~~~~~~~p~~~~~~~---- 221 (355)
+..|+..|...|++++|++.+.+..... +...+.+-.........+.- +-..++-.=.++.+|....-.+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6788999999999999999999988743 22222233333333333333 3344443333443333211000
Q ss_pred ---------HHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHc--------cCHHHHHHH--
Q 040440 222 ---------GLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVME--------SKHSEALRV-- 280 (355)
Q Consensus 222 ---------~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~-- 280 (355)
....-|..... .+-++.+++. .........++..++..|... ++-+++.+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~--------~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~ 658 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKE--------PKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTV 658 (877)
T ss_pred hhhhccCCHHHHHHHhhhhC--------cchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhH
Confidence 00000111111 2334444444 122333444455555555432 222334443
Q ss_pred HHHHHH-------hCCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 281 YEELVK-------EEPR-------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 281 ~~~~l~-------~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.++... .+|+ ....|...+.++.++|+-++|+..+-..+.
T Consensus 659 rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 659 REKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 222221 1121 134677788888899999999888876655
No 455
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=81 Score=31.05 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+.....+..+..-|+-|+...+.- ..+++ -.......|..++..|++++|...|-+.+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 334556677888888888877653 22222 2346778899999999999999999998875
No 456
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.24 E-value=39 Score=24.99 Aligned_cols=55 Identities=18% Similarity=0.127 Sum_probs=30.3
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+...+|+-++--+.+....+.+..++..+..+|.+|.+.|+..++-+++.++-+.
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4455566666556666555444455666777777777777777777776666553
No 457
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=71.16 E-value=9 Score=31.25 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=21.4
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
-.+..|+|+.|+++.+.+|+.+-..++
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd 118 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPD 118 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCc
Confidence 456789999999999999998544443
No 458
>PRK11619 lytic murein transglycosylase; Provisional
Probab=70.32 E-value=1.1e+02 Score=29.73 Aligned_cols=78 Identities=10% Similarity=-0.023 Sum_probs=52.2
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 243 KAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 243 ~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
++...+........+..+.-....+....++++.+...+..+-..........+.+|..+...|+.++|..+|+++..
T Consensus 297 ~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 297 EQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444444442222233344444455556788998888888776444445667888999998889999999999998743
No 459
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.21 E-value=51 Score=25.88 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=32.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
....++.+.|.+++|.+++++... +++.......|..+-.+.+.+.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h 161 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAH 161 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccccc
Confidence 345677889999999999999888 6766666666666555554443
No 460
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=70.19 E-value=1.4e+02 Score=31.49 Aligned_cols=86 Identities=14% Similarity=0.094 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhhcc-----CC--chHHHHHHHHHHHHHcc--------------------CHHHHHHHHHHHHHhC
Q 040440 236 EVEKRIEKAMERCKKEKK-----KS--DLRDFKLLIAQIKVMES--------------------KHSEALRVYEELVKEE 288 (355)
Q Consensus 236 ~a~~~~~~Al~~~~~~~~-----~~--~~~~~~~~la~~~~~~g--------------------~~~~A~~~~~~~l~~~ 288 (355)
.....+++++.+|.+... .| -..+....++.++..+. .-.++.+...+++...
T Consensus 356 ~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~ 435 (1185)
T PF08626_consen 356 LIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQ 435 (1185)
T ss_pred hhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhh
Confidence 334457777777777321 12 22344666677777777 6778888888887654
Q ss_pred CC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 289 PR------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 289 ~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.. ....+..++.+|...|-..++.-+++.++..
T Consensus 436 l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 436 LKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred hhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 32 2567889999999999988888787777654
No 461
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.88 E-value=40 Score=24.58 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=29.4
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 246 ERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
..+...........++...|.++...|++++|.++|+.++
T Consensus 87 ~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 87 KFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 3333345566777888888999999999999999988764
No 462
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.04 E-value=71 Score=30.25 Aligned_cols=76 Identities=14% Similarity=0.052 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
..+.+....+.-+.-...........+..+-..|+.++|-.+|++.+..+++ +.++..+.-+.+.|-...|...++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4555555555555444445566667777777778888888888888877776 566677777777777777777666
No 463
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.86 E-value=18 Score=22.48 Aligned_cols=23 Identities=22% Similarity=0.036 Sum_probs=11.6
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l 285 (355)
.....|...|++++|.+++++..
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444555556666655555544
No 464
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.42 E-value=73 Score=26.96 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHHHHHcCCC------CH----HH---HH-HHHHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN------DI----EA---LQ-TLMEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQ 193 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~------~~----~~---~~-~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~ 193 (355)
.||..|++.+++.++.-.. +. +. +. .=.+++.++|+|.+++...-+-.+.-.+- +.+.-.-...|
T Consensus 49 rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLy 128 (309)
T PF07163_consen 49 RDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLY 128 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHH
Confidence 4899999999998874311 11 11 11 12345667888888887766655432222 23444445667
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHhc-----cCchHHHHHHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRV--EAYHGLVMAYDG-----SDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~-----~~~~~~~a~~~~~~Al~~~ 248 (355)
.+.|++....+.-..-+. +|+|. .-|..++..|.. .|. +++|.++.
T Consensus 129 sKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~--------~~eAeelv 181 (309)
T PF07163_consen 129 SKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGH--------FSEAEELV 181 (309)
T ss_pred HHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhcccc--------HHHHHHHH
Confidence 788888887777766665 44432 236666666644 344 67777665
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.86 E-value=58 Score=25.60 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=24.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 195 (355)
...++++.|.+++|.+++++... +|+.......|..+-..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 34466777888888888877776 55555444444444333
No 466
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=67.60 E-value=34 Score=32.27 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDR 174 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 174 (355)
..-++|-.+|++.+..+|+ ..++..+.-+.+.|-..+|...+++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (578)
T PRK15490 56 NETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKK 99 (578)
T ss_pred hhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3778899999999999988 6778888889999999999998884
No 467
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=67.53 E-value=75 Score=32.35 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 040440 166 VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243 (355)
Q Consensus 166 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 243 (355)
+.-.+.+.++++...+.......+-.+|.+.+ ++++|+....+..+.++...+-.......+. .+...|+.
T Consensus 795 n~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLv-------Dvn~Ly~~ 867 (928)
T PF04762_consen 795 NKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLV-------DVNKLYDV 867 (928)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeec-------cHHHHHHH
Confidence 33344444444333333445555667777777 8888888888777653332222111111111 12223444
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 244 AMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 244 Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
|+..|+ +-..+..+...+.|..+=+-+++++-++.+. +..-.+-..+|+|++|+..+.++
T Consensus 868 ALG~YD----------l~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~-----~rry~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 868 ALGTYD----------LELALMVAQQSQKDPKEYLPFLQELQKLPPL-----YRRYKIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HhhhcC----------HHHHHHHHHHhccChHHHHHHHHHHHhCChh-----heeeeHhhhhCCHHHHHHHHHhh
Confidence 444421 1122223334456666767777766555431 23445666788889888887653
No 468
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.36 E-value=50 Score=29.73 Aligned_cols=26 Identities=19% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+..-|.+.+.+|+-++|.++++.+..
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45568888999999999999998864
No 469
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.81 E-value=20 Score=23.67 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=12.9
Q ss_pred HHHccCHHHHHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVK 286 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~ 286 (355)
+-..|+.++|+..|++++.
T Consensus 18 ~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 18 ADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhcCCHHHHHHHHHHHHH
Confidence 3445777777777777765
No 470
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.70 E-value=22 Score=31.51 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHh
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK------------KDEAEKQFEKFRRL 321 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~l~~ 321 (355)
..+|+++++++.. .+++..|..+|.++..+|+ |.+|...+.+|-..
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 4567777777754 5678899999999988876 56677777766554
No 471
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=1.6e+02 Score=30.38 Aligned_cols=111 Identities=14% Similarity=-0.041 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh------ccCch---HHHHHHHHHHHHHHHHhhc
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD------GSDKK---LNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~------~~~~~---~~~a~~~~~~Al~~~~~~~ 252 (355)
.....+++|.+|...|+..+|+.+|.++..-..... ++..+..-.. ..|+. ...+..+|.++++++++
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~-- 995 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEE-- 995 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHH--
Confidence 445678899999999999999999999987543332 4333332211 22222 12245667777666655
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHH
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD----FRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
-+-.+.+.+....+++.-|++ ...+..+-.-...+|.+-+|..
T Consensus 996 ------------------hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ 1042 (1480)
T KOG4521|consen 996 ------------------HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYK 1042 (1480)
T ss_pred ------------------hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHH
Confidence 344455555555555543322 2223333334445555555543
No 472
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.18 E-value=1.4e+02 Score=29.31 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=31.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
.++..|++|+...+......|. -...+..+..-+...|+|++|....-++.
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 3344667777666555444443 23455566666678888888887776654
No 473
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.80 E-value=52 Score=27.83 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIK 161 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 161 (355)
.-.+.++..++..|++..++..+|..+..
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 45778899999999999999999888764
No 474
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.71 E-value=44 Score=23.14 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
-+-.+..+|.+|...|+.+.|...|+.-..+.|+...+.+++
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHH
Confidence 355677888888888888888888888888888865554443
No 475
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=64.68 E-value=16 Score=23.80 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=8.6
Q ss_pred HccCHHHHHHHHHHHH
Q 040440 161 KSQKLVEAVDVIDRLI 176 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~ 176 (355)
..|++++|+.+|..++
T Consensus 18 ~~g~y~eA~~lY~~al 33 (75)
T cd02684 18 QRGDAAAALSLYCSAL 33 (75)
T ss_pred HhccHHHHHHHHHHHH
Confidence 4455555555555544
No 476
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=63.66 E-value=1e+02 Score=27.74 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=14.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+..|-.|...|+|.+|++.|-.+
T Consensus 276 Y~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666544
No 477
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.55 E-value=96 Score=26.27 Aligned_cols=49 Identities=20% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 235 NEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
.+-......|+++-.+. .....++.++..+|..++..+++.+|...|-.
T Consensus 103 per~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 103 PERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 33445567777777663 56677899999999999999999999988854
No 478
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=62.38 E-value=13 Score=24.21 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHHh
Q 040440 197 GESEAAIKGFEEILR 211 (355)
Q Consensus 197 g~~~~A~~~~~~~~~ 211 (355)
|+|++|..+|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555554
No 479
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=98 Score=26.21 Aligned_cols=151 Identities=9% Similarity=0.051 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCchHHHHHHHHHH------HHcCCHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKS--QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ------SYAGESEAA 202 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~------~~~g~~~~A 202 (355)
++.-...++.+++.+|.+...|...-.++-.. .++..-+.+.+++++.++.+-..|...-.+. ..-.++..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34556778899999999999888776666544 6788888999999999998877655443333 223344445
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH---HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHH----HHccCH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMA---YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIK----VMESKH 274 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~---~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~----~~~g~~ 274 (355)
.++-..++..++-|..+|...... ....|+... ..++++-+++..+ .--.|++..++..+-.+. ...-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~vis--qk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~~~~d~~~~ 247 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVIS--QKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSEFATDIVMI 247 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHHhhhhcCccccchhhHHHHHhccchHHHHHH
Confidence 666667778889899888766333 222333111 2246666666544 445566666554433222 222345
Q ss_pred HHHHHHHHH
Q 040440 275 SEALRVYEE 283 (355)
Q Consensus 275 ~~A~~~~~~ 283 (355)
++-++.+.+
T Consensus 248 ~e~v~~L~k 256 (328)
T COG5536 248 GEKVEDLGK 256 (328)
T ss_pred HHHHHHHHh
Confidence 555555533
No 480
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.41 E-value=23 Score=22.03 Aligned_cols=31 Identities=23% Similarity=0.124 Sum_probs=24.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
|..-.......+...|++++|.+++++..+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5556677788899999999999999987653
No 481
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=61.07 E-value=62 Score=23.62 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN----------------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
+.+..+..++.+.|+.+....++++.-..+.+ +...+..+..+|...|++..|+++.+...+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44556666777888888888888776544321 13467788889999999999999999999887
Q ss_pred C--CCHHHHHHHHH
Q 040440 214 P--LRVEAYHGLVM 225 (355)
Q Consensus 214 p--~~~~~~~~l~~ 225 (355)
+ -....|..+-.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 5 23455555443
No 482
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.06 E-value=1.7e+02 Score=28.52 Aligned_cols=55 Identities=9% Similarity=-0.159 Sum_probs=42.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
...+..+...|+...|...+..++.. .+..-...++.+....|.++.++....++
T Consensus 411 ~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 411 MARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 44567778889999999999888875 34566778888888999988888766554
No 483
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=60.90 E-value=44 Score=21.82 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 040440 234 LNEVEKRIEKAMERCKK 250 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~ 250 (355)
+++|+..|++|++.+.+
T Consensus 22 ~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 22 AEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444444
No 484
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=60.76 E-value=48 Score=23.34 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=25.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
|.+-...|+++.|.+...++-+..+...-.+..-+.+...+||
T Consensus 66 Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 66 GLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 5555667777777777777765544444444444555555553
No 485
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.25 E-value=1.1e+02 Score=26.38 Aligned_cols=118 Identities=12% Similarity=-0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-------WQLLKAQVQSYAGESEAAIKGFEEILRK--DPLRVEA 219 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 219 (355)
......+|.+|-+.++|..|...+.-.-........ .+..+|.+|...++..+|..+..++--. +..|...
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~L 182 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQL 182 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHH
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
...+-.||.+. .+.-.+..+.|..+++- .....+.......++.+..
T Consensus 183 qie~kvc~ARv---lD~krkFlEAAqrYyels~~ki~~e~~~~~aL~~a~~ 230 (399)
T KOG1497|consen 183 QIEYKVCYARV---LDYKRKFLEAAQRYYELSQRKIVDESERLEALKKALQ 230 (399)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHh
No 486
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=60.04 E-value=77 Score=24.38 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=40.7
Q ss_pred cCHHHHHHHHHHHHHcCCCchH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhccC
Q 040440 163 QKLVEAVDVIDRLIELEPNEFE--WQLLKAQVQSYAGESEAAIKGFEEILRKD--PLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~--~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 231 (355)
++-+-|...++..+........ +.......-...|.|.+|.+++.+.++.. .+-..+|..++.|.....
T Consensus 71 ~N~eLa~~tLEnLvt~snTKikEiA~leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vid 143 (220)
T PF10858_consen 71 NNSELAFNTLENLVTNSNTKIKEIAALEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVID 143 (220)
T ss_pred CcHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheec
Confidence 4556677777776544332221 34444455667788888888888888753 233445666666655443
No 487
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=59.80 E-value=1.1e+02 Score=25.99 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=74.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCC--chHH-HHHHHHH--HHHcCC----HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPN--EFEW-QLLKAQV--QSYAGE----SEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~-~~~la~~--~~~~g~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
...+...++|++=-..+++..+...+ ..+. |+..... ...... ...-.+.++.-++..|+...++..+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34566778888888888777654221 1111 1111111 111111 1235667777788899999998888888
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
+....- .+=-..-.......-+. ....-.+.|...+.++++++|....++..+..+-...|
T Consensus 87 ~~~~Aw-------------~~RG~~~A~~V~~~~W~------~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fg 147 (277)
T PF13226_consen 87 WVHRAW-------------DIRGSGYASTVTEAQWL------GAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFG 147 (277)
T ss_pred HHHHHH-------------HHHccchhcccCHHHHH------HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcC
Confidence 754321 11000000000011111 11223577888888888888888887777777766666
Q ss_pred CHH
Q 040440 307 KKD 309 (355)
Q Consensus 307 ~~~ 309 (355)
+.+
T Consensus 148 eP~ 150 (277)
T PF13226_consen 148 EPD 150 (277)
T ss_pred Cch
Confidence 543
No 488
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=59.36 E-value=1.6e+02 Score=27.75 Aligned_cols=80 Identities=10% Similarity=0.027 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------C
Q 040440 147 NDIEALQTLMEVRIK--SQKLVEAVDVIDRLIEL-----EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK------D 213 (355)
Q Consensus 147 ~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~ 213 (355)
..+.++-.||++--. ..+-..++++|++++.. +..+..-|..+|..+++.++|.+|+..+-++-.. .
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~ 354 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYS 354 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 356677777776542 23345678888888765 3345567888999999999999999999887654 1
Q ss_pred CCCHHHHHHHHHH
Q 040440 214 PLRVEAYHGLVMA 226 (355)
Q Consensus 214 p~~~~~~~~l~~~ 226 (355)
.++.+.|..+..+
T Consensus 355 reDeEiYKEfleI 367 (618)
T PF05053_consen 355 REDEEIYKEFLEI 367 (618)
T ss_dssp GGGHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 3455555444433
No 489
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=59.31 E-value=1.8e+02 Score=28.43 Aligned_cols=125 Identities=19% Similarity=0.109 Sum_probs=69.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVE----AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFK 261 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~ 261 (355)
..|..+...|+-++|..+.++++.-. ++. ..+.++..|...|+ .+|+..+-. ..+..++..-.
T Consensus 506 ~vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgn---------nkair~lLh~aVsD~nDDVrRa 574 (929)
T KOG2062|consen 506 AVGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGN---------NKAIRRLLHVAVSDVNDDVRRA 574 (929)
T ss_pred HHhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCc---------hhhHHHhhcccccccchHHHHH
Confidence 44566667778888888888877532 222 25677778888876 455554443 22222333222
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDF--RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..+|.-+.-..+++....+..-+-+.+.... .+-..+|.++.-.|. .+|+..++-... +|.+
T Consensus 575 AVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~-D~~~ 638 (929)
T KOG2062|consen 575 AVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS-DPVD 638 (929)
T ss_pred HHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc-ChHH
Confidence 2233333445677776666665544332222 234556667766775 467777776554 4543
No 490
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.27 E-value=67 Score=23.43 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccCCchHHHHHHHHHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVE-----AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~~la~~~~ 269 (355)
.-..-..+++++++...++.. -+..+=..|... .....+++.- .........++...|..+.
T Consensus 41 ~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~----------~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE 110 (125)
T smart00777 41 KESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN----------CDEPRELFQFLYSKGIGTKLALFYEEWAQLLE 110 (125)
T ss_pred chhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHH
Confidence 344456677777776433221 122222233332 3344555554 3444556677888899999
Q ss_pred HccCHHHHHHHHHH
Q 040440 270 MESKHSEALRVYEE 283 (355)
Q Consensus 270 ~~g~~~~A~~~~~~ 283 (355)
..|++.+|.++|+.
T Consensus 111 ~~g~~~~A~~iy~~ 124 (125)
T smart00777 111 AAGRYKKADEVYQL 124 (125)
T ss_pred HcCCHHHHHHHHHc
Confidence 99999999999874
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=58.81 E-value=1.2e+02 Score=28.44 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=52.8
Q ss_pred HHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHH
Q 040440 154 TLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLVM 225 (355)
Q Consensus 154 ~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~ 225 (355)
.+-..++..| +|..|+-.+-.+.+..|.. +-..++++|.+++.. +..+...|..+|.
T Consensus 262 ~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg 326 (618)
T PF05053_consen 262 DLLWLLYDMGHLARYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGG 326 (618)
T ss_dssp HHHHHHHHTTTTTT-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHH
T ss_pred HHHHHHHhcCchhhCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhh
Confidence 3444444444 5666777777766666532 234556667776654 2334556788898
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.+++.++ +.+|+..|.+|-+++..-+-..++.++|-.
T Consensus 327 ~~yR~~~-~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKE 363 (618)
T PF05053_consen 327 YYYRHKR-YREALRSWAEAADVIRKYNYSREDEEIYKE 363 (618)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHTTSB--GGGHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHcccCccHHHHHHH
Confidence 8988888 777777777777766664444555555433
No 492
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=58.45 E-value=25 Score=22.28 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=13.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 040440 190 AQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~ 211 (355)
|.-+-..|++++|+.+|.++++
T Consensus 12 Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 12 AVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334456777777777766665
No 493
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=57.61 E-value=38 Score=21.95 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=12.2
Q ss_pred HHccCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVK 286 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~ 286 (355)
-..|++++|+.+|.++++
T Consensus 19 d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 19 DEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 446777777777776654
No 494
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=57.44 E-value=1.3e+02 Score=26.01 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=44.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+......|..+.|+..++..+..... .....+.++.++...|.++-|..+|+...+.
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQ 279 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55567789999999999986553332 2445667899999999999999999988764
No 495
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=57.28 E-value=27 Score=18.19 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHH
Q 040440 164 KLVEAVDVIDRLI 176 (355)
Q Consensus 164 ~~~~A~~~~~~~~ 176 (355)
+.++|+.+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4455555555444
No 496
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=57.21 E-value=66 Score=22.66 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
....|..-...||+..|.+.+.++.+..+...-.+..-+..-..+||
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 34455566777888888888888866654444445544555555553
No 497
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=57.11 E-value=74 Score=23.23 Aligned_cols=67 Identities=10% Similarity=-0.063 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPR----------------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+...+...+...|+.+....++++....+.+ +...+..+..+|...|++..|+++.....+..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 34455566667788888888888877654321 24678888999999999999999999998887
Q ss_pred CCC
Q 040440 323 PRN 325 (355)
Q Consensus 323 p~~ 325 (355)
|-+
T Consensus 83 ~I~ 85 (126)
T PF12921_consen 83 PIP 85 (126)
T ss_pred CCC
Confidence 643
No 498
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=55.36 E-value=68 Score=23.31 Aligned_cols=61 Identities=15% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW---------------QLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+..+|+...+.+++-.++-.|++++....+-... ..++|..+...|+.+=.+++++-+-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
No 499
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=53.68 E-value=31 Score=22.57 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=12.6
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 040440 192 VQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~ 211 (355)
-+-..|+|++|+.+|.++++
T Consensus 15 e~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 34456677777777666665
No 500
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.55 E-value=1.8e+02 Score=26.51 Aligned_cols=130 Identities=14% Similarity=-0.004 Sum_probs=70.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc-----------CCCchHHHHHHHHHHHHcCCH----------HHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIEL-----------EPNEFEWQLLKAQVQSYAGES----------EAAIKGFEEIL 210 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~ 210 (355)
+...|.+.+....|++|+.++-.+-+. -.+.+-....+.+||+.+.+. ..|.+.|.++.
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~sy 245 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSY 245 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhh
Confidence 445667777888899988887665433 122222344566788877653 23444444333
Q ss_pred hh---------CCCCHH------HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH--------H
Q 040440 211 RK---------DPLRVE------AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ--------I 267 (355)
Q Consensus 211 ~~---------~p~~~~------~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~--------~ 267 (355)
.. .+..++ .+..-|.+.+..|+ -++|...++.|...+.+.....+...+...+|. +
T Consensus 246 Genl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~-~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaL 324 (568)
T KOG2561|consen 246 GENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQ-RDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLAL 324 (568)
T ss_pred hhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHH
Confidence 21 122222 23344666677777 566666777777766664444443333333321 1
Q ss_pred HHHccCHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYE 282 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~ 282 (355)
-.-.|+.+.|+.++.
T Consensus 325 Rsc~g~Vd~AvqfI~ 339 (568)
T KOG2561|consen 325 RSCNGDVDSAVQFII 339 (568)
T ss_pred HhccccHHHHHHHHH
Confidence 112366666666553
Done!